Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory; #9

Open
xiaocong3333 opened this issue Feb 7, 2021 · 0 comments

Comments

@xiaocong3333
Copy link

actinn_predict.py -trs ./train_set.h5 -trl ./train_label.txt.gz -ts ./test_set.h5 -lr 0.0001 -ne 50 -ms 128 -pc True -op False
2021-02-06 20:06:19.986295: W tensorflow/stream_executor/platform/default/dso_loader.cc:60] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory; LD_LIBRARY_PATH: /usr/lib/cuda/include:/usr/lib/cuda/lib64:
2021-02-06 20:06:19.986322: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine.
Traceback (most recent call last):
File "/home/congxiao/envisoft/actinn_predict.py", line 313, in
train_set = pd.read_hdf(args.train_set, key="dge")
File "/usr/local/lib/python3.8/site-packages/pandas/io/pytables.py", line 399, in read_hdf
store = HDFStore(path_or_buf, mode=mode, errors=errors, **kwargs)
File "/usr/local/lib/python3.8/site-packages/pandas/io/pytables.py", line 561, in init
self.open(mode=mode, **kwargs)
File "/usr/local/lib/python3.8/site-packages/pandas/io/pytables.py", line 710, in open
self._handle = tables.open_file(self._path, self._mode, **kwargs)
File "/home/congxiao/.local/lib/python3.8/site-packages/tables/file.py", line 315, in open_file
return File(filename, mode, title, root_uep, filters, **kwargs)
File "/home/congxiao/.local/lib/python3.8/site-packages/tables/file.py", line 778, in init
self._g_new(filename, mode, **params)
File "tables/hdf5extension.pyx", line 492, in tables.hdf5extension.File._g_new
tables.exceptions.HDF5ExtError: HDF5 error back trace

File "H5F.c", line 509, in H5Fopen
unable to open file
File "H5Fint.c", line 1400, in H5F__open
unable to open file
File "H5Fint.c", line 1700, in H5F_open
unable to read superblock
File "H5Fsuper.c", line 411, in H5F__super_read
file signature not found

End of HDF5 error back trace

Unable to open/create file './train_set.h5'

I checked I have nividia installed in my ubuntu, I tried to update it, but it looks it doesn't work.
I'm not sure where it goes wrong.
Thank you!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant