From 36b04c502ad261bf3a7c8d151ed8110ae704e21b Mon Sep 17 00:00:00 2001 From: Manuel Lera-Ramirez Date: Wed, 6 Nov 2024 17:25:25 +0000 Subject: [PATCH] fix bug in make_plasmid_summary which was messing up references --- README.md | 2 +- make_feature_dict.py | 10 +- make_plasmid_files.sh | 3 - make_plasmid_site_dict.py | 8 +- make_plasmid_summary.py | 17 +- poetry.lock | 34 +- pyproject.toml | 1 + results/plasmid_features.json | 59547 +++++++++++++++++++++++------- results/plasmid_summary.json | 62014 +++++++++++++++++++++++++------- run_formatting.sh | 9 + 10 files changed, 94341 insertions(+), 27304 deletions(-) delete mode 100644 make_plasmid_files.sh diff --git a/README.md b/README.md index 21b9a56..cada150 100644 --- a/README.md +++ b/README.md @@ -13,7 +13,7 @@ config: layout: elk --- flowchart LR -SnapGene ==> Plasmids[17k+ plasmids] +SnapGene ==> Plasmids[~14k plasmids] AddGene ==> Plasmids Plasmids ==> Sites[extracted att sites] Plasmids ==> SequenceFeatures[extracted sequence features] diff --git a/make_feature_dict.py b/make_feature_dict.py index 14a3bd3..55fe92c 100644 --- a/make_feature_dict.py +++ b/make_feature_dict.py @@ -51,6 +51,8 @@ import json from Bio import SeqIO from Bio.SeqFeature import SeqFeature +import warnings +from tqdm import tqdm def main(plasmid_summary_file, plasmid_site_dict_file, output_file): @@ -60,7 +62,7 @@ def main(plasmid_summary_file, plasmid_site_dict_file, output_file): with open(plasmid_site_dict_file) as f: plasmid_site_dict = json.load(f) - for plasmid in plasmid_summary: + for plasmid in tqdm(plasmid_summary, desc="Extracting plasmid features"): # If no att sites, skip and remove from plasmid summary if len(plasmid_site_dict[plasmid["file"]]) == 0: plasmid_summary.remove(plasmid) @@ -70,8 +72,10 @@ def main(plasmid_summary_file, plasmid_site_dict_file, output_file): with open(plasmid["file"], "br") as f: record = SeqIO.read(f, "snapgene") elif plasmid["source"] == "addgene": - with open(plasmid["file"], "r") as f: - record = SeqIO.read(f, "genbank") + with warnings.catch_warnings(): + warnings.simplefilter("ignore") + with open(plasmid["file"], "r") as f: + record = SeqIO.read(f, "genbank") features: list[SeqFeature] = record.features plasmid["att_sites"] = list(sorted(plasmid_site_dict[plasmid["file"]].keys())) plasmid["features"] = set() diff --git a/make_plasmid_files.sh b/make_plasmid_files.sh deleted file mode 100644 index 69841f2..0000000 --- a/make_plasmid_files.sh +++ /dev/null @@ -1,3 +0,0 @@ -python make_plasmid_site_dict.py -python make_plasmid_summary.py -python make_feature_dict.py diff --git a/make_plasmid_site_dict.py b/make_plasmid_site_dict.py index e18ae29..30bc6ed 100644 --- a/make_plasmid_site_dict.py +++ b/make_plasmid_site_dict.py @@ -19,6 +19,8 @@ import json import re import glob +import warnings +from tqdm import tqdm def main(input_folder, output_file): @@ -29,11 +31,13 @@ def main(input_folder, output_file): out_dict = dict() - for file in files: + for file in tqdm(files, desc="Processing plasmid files"): plasmid_dict = dict() file_format = "snapgene" if file.split(".")[-1] == "dna" else "genbank" - plasmid_record = SeqIO.read(file, file_format) + with warnings.catch_warnings(): + warnings.simplefilter("ignore") + plasmid_record = SeqIO.read(file, file_format) # Find att sites for feature in plasmid_record.features: diff --git a/make_plasmid_summary.py b/make_plasmid_summary.py index 0db3a6c..309d3ce 100644 --- a/make_plasmid_summary.py +++ b/make_plasmid_summary.py @@ -31,18 +31,23 @@ def main( input_folder, output_file, all_gateway_plasmids, addgene_kits, addgene_articles ): addgene_id2name = dict() + addgene_id2reference_id = dict() with open(all_gateway_plasmids) as f: for line in f: addgene_id, name = line.strip().split("\t")[:2] addgene_id2name[addgene_id] = name + reference_id = line.strip().split("\t")[2:] + addgene_id2reference_id[addgene_id] = ( + reference_id[0] if len(reference_id) > 0 else None + ) - addgene_id2references = dict() + reference_id2reference_links = dict() with open(addgene_articles) as f: for line in f: ls = line.strip().split("\t") addgene_id = ls[0] references = ls[1:] - addgene_id2references[addgene_id] = references + reference_id2reference_links[addgene_id] = references addgene_id2kit = dict() with open(addgene_kits) as f: @@ -75,8 +80,12 @@ def main( plasmid_dict["plasmid_name"] = addgene_id2name[addgene_id] plasmid_dict["sequence-type"] = basename.split(".")[1] plasmid_dict["addgene_id"] = addgene_id - if addgene_id in addgene_id2references: - plasmid_dict["references"] = addgene_id2references[addgene_id] + if addgene_id in addgene_id2reference_id: + reference_id = addgene_id2reference_id[addgene_id] + if reference_id is not None: + plasmid_dict["references"] = reference_id2reference_links[ + reference_id + ] else: plasmid_dict["references"] = [] if addgene_id in addgene_id2kit: diff --git a/poetry.lock b/poetry.lock index 5ffd5a9..739e385 100644 --- a/poetry.lock +++ b/poetry.lock @@ -114,6 +114,17 @@ files = [ {file = "certifi-2024.8.30.tar.gz", hash = "sha256:bec941d2aa8195e248a60b31ff9f0558284cf01a52591ceda73ea9afffd69fd9"}, ] +[[package]] +name = "colorama" +version = "0.4.6" +description = "Cross-platform colored terminal text." +optional = false +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" +files = [ + {file = "colorama-0.4.6-py2.py3-none-any.whl", hash = "sha256:4f1d9991f5acc0ca119f9d443620b77f9d6b33703e51011c16baf57afb285fc6"}, + {file = "colorama-0.4.6.tar.gz", hash = "sha256:08695f5cb7ed6e0531a20572697297273c47b8cae5a63ffc6d6ed5c201be6e44"}, +] + [[package]] name = "greenlet" version = "3.1.1" @@ -592,6 +603,27 @@ files = [ {file = "soupsieve-2.6.tar.gz", hash = "sha256:e2e68417777af359ec65daac1057404a3c8a5455bb8abc36f1a9866ab1a51abb"}, ] +[[package]] +name = "tqdm" +version = "4.67.0" +description = "Fast, Extensible Progress Meter" +optional = false +python-versions = ">=3.7" +files = [ + {file = "tqdm-4.67.0-py3-none-any.whl", hash = "sha256:0cd8af9d56911acab92182e88d763100d4788bdf421d251616040cc4d44863be"}, + {file = "tqdm-4.67.0.tar.gz", hash = "sha256:fe5a6f95e6fe0b9755e9469b77b9c3cf850048224ecaa8293d7d2d31f97d869a"}, +] + +[package.dependencies] +colorama = {version = "*", markers = "platform_system == \"Windows\""} + +[package.extras] +dev = ["pytest (>=6)", "pytest-cov", "pytest-timeout", "pytest-xdist"] +discord = ["requests"] +notebook = ["ipywidgets (>=6)"] +slack = ["slack-sdk"] +telegram = ["requests"] + [[package]] name = "typing-extensions" version = "4.12.2" @@ -628,4 +660,4 @@ files = [ [metadata] lock-version = "2.0" python-versions = "^3.12" -content-hash = "0caa06cb7e8a5ab13a4ff15a2f974559f80d6cc0c8bcdae24adeaaedcdda8a41" +content-hash = "84d958aad8ef7c5e6c2fef9a7f9a2a9184105b63b3f87c93321db1c176ab278a" diff --git a/pyproject.toml b/pyproject.toml index 8e2785b..f7705a6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -11,6 +11,7 @@ python = "^3.12" biopython = "^1.84" pydna = "^5.2.0" pandas = "^2.2.3" +tqdm = "^4.67.0" [tool.poetry.group.playwright.dependencies] diff --git a/results/plasmid_features.json b/results/plasmid_features.json index 7f52a5a..22fc553 100644 --- a/results/plasmid_features.json +++ b/results/plasmid_features.json @@ -2508,7 +2508,10 @@ "plasmid_name": "pDONR223_C1orf150_p.G2E", "sequence-type": "addgene-full", "addgene_id": "81309", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -2540,7 +2543,10 @@ "plasmid_name": "pDest-313 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161898", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -2595,7 +2601,10 @@ "plasmid_name": "pDONR223_MAP2K3_WT", "sequence-type": "addgene-full", "addgene_id": "82140", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -2624,7 +2633,6 @@ "plasmid_name": "Hs.HRAS Q61L", "sequence-type": "depositor-full", "addgene_id": "83186", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -2650,7 +2658,10 @@ "plasmid_name": "pDONR221_SLC9B2", "sequence-type": "addgene-full", "addgene_id": "132235", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -2681,7 +2692,10 @@ "plasmid_name": "pLenti CMV TRE3G Puro FLAG-DD-ER-mCherry-TRF1-FokI WT", "sequence-type": "addgene-full", "addgene_id": "207832", - "references": [], + "references": [ + "https://doi.org/10.1038/nature20099", + "https://www.ncbi.nlm.nih.gov/pubmed/27760120" + ], "kit": null, "att_sites": [ "attB1", @@ -2749,7 +2763,10 @@ "plasmid_name": "pJRA110", "sequence-type": "addgene-full", "addgene_id": "209343", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -2790,7 +2807,10 @@ "plasmid_name": "pDONR221-GATA4", "sequence-type": "addgene-full", "addgene_id": "101417", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -2819,7 +2839,10 @@ "plasmid_name": "pPB-cT3G-cERP2-FOXL2", "sequence-type": "addgene-full", "addgene_id": "192914", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -2865,7 +2888,10 @@ "plasmid_name": "pMXs-Pou4f3", "sequence-type": "addgene-full", "addgene_id": "158530", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.55249", + "https://www.ncbi.nlm.nih.gov/pubmed/32602462" + ], "kit": null, "att_sites": [ "attB1", @@ -2896,7 +2922,10 @@ "plasmid_name": "plenti-CAG-IKZF3-Q147H-FLAG-IRES-GFP", "sequence-type": "depositor-full", "addgene_id": "69050", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -2958,7 +2987,10 @@ "plasmid_name": "pCM5.65", "sequence-type": "depositor-full", "addgene_id": "19371", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -2989,7 +3021,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS2B", "sequence-type": "addgene-full", "addgene_id": "145344", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145344.addgene-full.gb" }, @@ -2998,7 +3033,10 @@ "plasmid_name": "C415-E01: attB4-stuffer-attB1r", "sequence-type": "addgene-full", "addgene_id": "162931", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -3031,7 +3069,10 @@ "plasmid_name": "pDONR221-RHBG_STOP", "sequence-type": "depositor-full", "addgene_id": "161049", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -3062,7 +3103,10 @@ "plasmid_name": "pDONR221-NIPAL3_STOP", "sequence-type": "addgene-full", "addgene_id": "161457", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -3093,7 +3137,10 @@ "plasmid_name": "pDONR221-kcnt1a", "sequence-type": "addgene-full", "addgene_id": "164961", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.329", + "https://www.ncbi.nlm.nih.gov/pubmed/33728688" + ], "kit": null, "att_sites": [ "attL1", @@ -3124,7 +3171,10 @@ "plasmid_name": "pAG304GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14352", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -3180,7 +3230,10 @@ "plasmid_name": "pDONR201-Ctdnep1", "sequence-type": "addgene-full", "addgene_id": "196520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attL1", @@ -3203,7 +3256,10 @@ "plasmid_name": "pGC180", "sequence-type": "depositor-full", "addgene_id": "19616", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -3237,7 +3293,10 @@ "plasmid_name": "pENTR223-BDLF3.5", "sequence-type": "addgene-full", "addgene_id": "195769", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -3263,7 +3322,10 @@ "plasmid_name": "p5Ecldn5bE1", "sequence-type": "addgene-full", "addgene_id": "90113", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -3294,7 +3356,10 @@ "plasmid_name": "pcDNA3.1 PA-mCit-NL", "sequence-type": "addgene-full", "addgene_id": "113444", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "att_sites": [ "attB1", @@ -3347,7 +3412,10 @@ "plasmid_name": "pINDUCER-21-HOXA9", "sequence-type": "addgene-full", "addgene_id": "97041", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "att_sites": [ "attB1", @@ -3404,7 +3472,10 @@ "plasmid_name": "pENTR-Site2", "sequence-type": "depositor-full", "addgene_id": "24513", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0009846", + "https://www.ncbi.nlm.nih.gov/pubmed/20352097" + ], "kit": null, "att_sites": [ "attL1", @@ -3452,7 +3523,10 @@ "plasmid_name": "pHAGE-PIK3CA-Q546E", "sequence-type": "addgene-full", "addgene_id": "116526", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116526.addgene-full.gb" }, @@ -3461,7 +3535,10 @@ "plasmid_name": "pENTR-TARDBP-A315T", "sequence-type": "addgene-full", "addgene_id": "141324", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "att_sites": [ "attL1", @@ -3492,7 +3569,10 @@ "plasmid_name": "pDONR223-NTRK2", "sequence-type": "addgene-full", "addgene_id": "23883", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -3524,7 +3604,10 @@ "plasmid_name": "pDONR223_CYLC2_p.V105F", "sequence-type": "addgene-full", "addgene_id": "81392", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -3556,7 +3639,10 @@ "plasmid_name": "pSGE_975_Nhe2_EcR-mut", "sequence-type": "depositor-full", "addgene_id": "71179", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -3589,7 +3675,10 @@ "plasmid_name": "pCFJ2211 - [1-2] ENTR - Fluor - mMaple3(intron, PATC, no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159866", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -3620,7 +3709,10 @@ "plasmid_name": "pENTR L1-5XQUAS-L4", "sequence-type": "depositor-full", "addgene_id": "32308", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attL1", @@ -3653,7 +3745,10 @@ "plasmid_name": "MSCV-N EBNA1", "sequence-type": "addgene-full", "addgene_id": "37954", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "att_sites": [ "attB1", @@ -3699,7 +3794,10 @@ "plasmid_name": "pDN0604 (pDEST, HygR)", "sequence-type": "addgene-full", "addgene_id": "210483", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "att_sites": [ "attR1", @@ -3751,7 +3849,10 @@ "plasmid_name": "pR26 iBFP Dest", "sequence-type": "depositor-full", "addgene_id": "74284", - "references": [], + "references": [ + "https://doi.org/10.1186/s12896-016-0234-4", + "https://www.ncbi.nlm.nih.gov/pubmed/26772810" + ], "kit": null, "att_sites": [ "attR1", @@ -3814,7 +3915,10 @@ "plasmid_name": "pHAGE-ALK", "sequence-type": "addgene-full", "addgene_id": "116712", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -3868,7 +3972,10 @@ "plasmid_name": "pLX307 P2A GFP PRDM14", "sequence-type": "addgene-full", "addgene_id": "193676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -3933,7 +4040,10 @@ "plasmid_name": "pYPQ292 (AaCas12b)-D570A-TV-MS2-TV", "sequence-type": "addgene-full", "addgene_id": "136381", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -3968,7 +4078,9 @@ "plasmid_name": "pMpGWB132", "sequence-type": "depositor-full", "addgene_id": "68586", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -4014,7 +4126,6 @@ "plasmid_name": "pcDNA-SUN1 EGFP", "sequence-type": "addgene-full", "addgene_id": "187675", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -4066,7 +4177,10 @@ "plasmid_name": "tetO-SNAI2", "sequence-type": "addgene-full", "addgene_id": "170702", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -4128,7 +4242,6 @@ "plasmid_name": "IDG_KCNK7_OE_1", "sequence-type": "addgene-full", "addgene_id": "161663", - "references": [], "kit": null, "file": "data/addgene_plasmids/161663.addgene-full.gb" }, @@ -4137,7 +4250,10 @@ "plasmid_name": "p5E-QUAS5x", "sequence-type": "addgene-full", "addgene_id": "155113", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "att_sites": [ "attL4", @@ -4168,7 +4284,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) EPB41L1", "sequence-type": "addgene-full", "addgene_id": "107508", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB1", @@ -4230,7 +4349,10 @@ "plasmid_name": "pCM3.23", "sequence-type": "depositor-full", "addgene_id": "21389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -4253,7 +4375,10 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ash-mCerulean", "sequence-type": "depositor-full", "addgene_id": "69579", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1311126110", + "https://www.ncbi.nlm.nih.gov/pubmed/24006363" + ], "kit": null, "att_sites": [ "attB1", @@ -4319,7 +4444,6 @@ "plasmid_name": "pCDNA3.2/V5-DEST-Noa1", "sequence-type": "addgene-full", "addgene_id": "191969", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -4369,7 +4493,10 @@ "plasmid_name": "pHAGE-PIK3CA-E110delE", "sequence-type": "addgene-full", "addgene_id": "116469", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -4423,7 +4550,10 @@ "plasmid_name": "pMOS009: pLX304-QuasAr2", "sequence-type": "depositor-full", "addgene_id": "62985", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3000", + "https://www.ncbi.nlm.nih.gov/pubmed/24952910" + ], "kit": null, "att_sites": [ "attB1", @@ -4484,7 +4614,10 @@ "plasmid_name": "pGWB410", "sequence-type": "depositor-full", "addgene_id": "74804", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -4532,7 +4665,10 @@ "plasmid_name": "pDONR223_AR_WT", "sequence-type": "addgene-full", "addgene_id": "82094", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -4564,7 +4700,10 @@ "plasmid_name": "MAP2-GCaMP3", "sequence-type": "addgene-full", "addgene_id": "43917", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0028719", + "https://www.ncbi.nlm.nih.gov/pubmed/22174877" + ], "kit": null, "att_sites": [ "attB1", @@ -4629,7 +4768,6 @@ "plasmid_name": "R777-E051 Hs.ECT2", "sequence-type": "depositor-full", "addgene_id": "70335", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -4657,7 +4795,10 @@ "plasmid_name": "pCMB-GAr", "sequence-type": "depositor-full", "addgene_id": "61173", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -4702,7 +4843,10 @@ "plasmid_name": "pDONR221_SLC22A9", "sequence-type": "addgene-full", "addgene_id": "132001", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -4733,7 +4877,10 @@ "plasmid_name": "pHAGE-ROR1", "sequence-type": "addgene-full", "addgene_id": "116789", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -4783,7 +4930,10 @@ "plasmid_name": "pCPP5616", "sequence-type": "addgene-full", "addgene_id": "128727", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -4814,7 +4964,10 @@ "plasmid_name": "pENTR4-GFP-C3 (w393-1)", "sequence-type": "depositor-full", "addgene_id": "17397", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -4843,7 +4996,10 @@ "plasmid_name": "pGWT35S-Citrine-PTS", "sequence-type": "addgene-full", "addgene_id": "182585", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "att_sites": [ "attB1", @@ -4887,7 +5043,10 @@ "plasmid_name": "Flag-HA-USP8", "sequence-type": "addgene-full", "addgene_id": "22608", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -4936,7 +5095,10 @@ "plasmid_name": "pDONR223_PPP6C_p.E180K", "sequence-type": "addgene-full", "addgene_id": "81334", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -4968,7 +5130,10 @@ "plasmid_name": "pHAGE-PIK3CG-G436R", "sequence-type": "addgene-full", "addgene_id": "116580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -5023,7 +5188,10 @@ "plasmid_name": "pDONR221_SLC6A7", "sequence-type": "addgene-full", "addgene_id": "132208", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -5054,7 +5222,10 @@ "plasmid_name": "pHAGE-RAF1-S257L", "sequence-type": "addgene-full", "addgene_id": "116660", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -5104,7 +5275,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp10", "sequence-type": "depositor-full", "addgene_id": "168842", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -5133,7 +5307,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3A WT", "sequence-type": "addgene-full", "addgene_id": "123089", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -5179,7 +5356,10 @@ "plasmid_name": "pENTR-R2-pA-L4", "sequence-type": "addgene-full", "addgene_id": "141062", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL4", @@ -5209,7 +5389,10 @@ "plasmid_name": "pKI-cjFOXP2-hum", "sequence-type": "addgene-full", "addgene_id": "129757", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-018-37990-w", + "https://www.ncbi.nlm.nih.gov/pubmed/30728412" + ], "kit": null, "att_sites": [ "attB1", @@ -5256,7 +5439,10 @@ "plasmid_name": "CMV-dCasRx-ccdB", "sequence-type": "addgene-full", "addgene_id": "221003", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.028", + "https://www.ncbi.nlm.nih.gov/pubmed/38917795" + ], "kit": null, "att_sites": [ "attR1", @@ -5294,7 +5480,10 @@ "plasmid_name": "pAG416GPD-ccdB", "sequence-type": "addgene-full", "addgene_id": "14148", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -5354,7 +5543,6 @@ "plasmid_name": "p667-UBC-PRKCQ-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170590", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -5419,7 +5607,10 @@ "plasmid_name": "pDONR223_EIF4EBP1_WT", "sequence-type": "addgene-full", "addgene_id": "82206", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -5448,7 +5639,10 @@ "plasmid_name": "Flag-HA-USP20", "sequence-type": "addgene-full", "addgene_id": "22573", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -5493,7 +5687,10 @@ "plasmid_name": "pENTR1A mKate2-hu_ncOGT D554N", "sequence-type": "addgene-full", "addgene_id": "154283", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "att_sites": [ "attB1", @@ -5521,7 +5718,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(V306R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128655", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -5571,7 +5771,6 @@ "plasmid_name": "R777-E221 Hs.RALGDS", "sequence-type": "depositor-full", "addgene_id": "70505", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -5599,7 +5798,10 @@ "plasmid_name": "pSBDEST.H", "sequence-type": "addgene-full", "addgene_id": "79464", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attR1", @@ -5651,7 +5853,10 @@ "plasmid_name": "pDONR221_SLC7A14", "sequence-type": "addgene-full", "addgene_id": "132173", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -5682,7 +5887,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD7-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113479", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -5727,7 +5935,10 @@ "plasmid_name": "pDONR221_SLCO3A1", "sequence-type": "addgene-full", "addgene_id": "132293", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -5758,7 +5969,10 @@ "plasmid_name": "pCW57.1-3xFLAG-NLS-GFP", "sequence-type": "addgene-full", "addgene_id": "198238", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddad021", + "https://www.ncbi.nlm.nih.gov/pubmed/36728804" + ], "kit": null, "att_sites": [ "attR2" @@ -5819,7 +6033,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP10", "sequence-type": "addgene-full", "addgene_id": "169384", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -5862,7 +6075,6 @@ "plasmid_name": "pDONR221-FURIN", "sequence-type": "addgene-full", "addgene_id": "158442", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -5892,7 +6104,10 @@ "plasmid_name": "pDONR-IAA14", "sequence-type": "depositor-full", "addgene_id": "83851", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -5923,7 +6138,10 @@ "plasmid_name": "UAS::PTPRFb-DN-GFP", "sequence-type": "depositor-full", "addgene_id": "37111", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.01.040", + "https://www.ncbi.nlm.nih.gov/pubmed/22326027" + ], "kit": null, "att_sites": [ "attB1", @@ -5967,7 +6185,10 @@ "plasmid_name": "pDEST mpeg1:tomato-CAAX", "sequence-type": "addgene-full", "addgene_id": "135215", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13967", + "https://www.ncbi.nlm.nih.gov/pubmed/25470057" + ], "kit": null, "att_sites": [ "attB1", @@ -6006,7 +6227,10 @@ "plasmid_name": "pDONR221 Tma16", "sequence-type": "depositor-full", "addgene_id": "63779", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -6037,7 +6261,6 @@ "plasmid_name": "pMx/ATP9B-HA", "sequence-type": "addgene-full", "addgene_id": "209231", - "references": [], "kit": null, "file": "data/addgene_plasmids/209231.addgene-full.gb" }, @@ -6046,7 +6269,6 @@ "plasmid_name": "pSMPUW_8.1_ M2_CAMKIIA-gateway-V5", "sequence-type": "addgene-full", "addgene_id": "128461", - "references": [], "kit": null, "file": "data/addgene_plasmids/128461.addgene-full.gb" }, @@ -6055,7 +6277,10 @@ "plasmid_name": "pDONR221 NLRP1", "sequence-type": "addgene-full", "addgene_id": "166823", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -6088,7 +6313,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP2", "sequence-type": "addgene-full", "addgene_id": "141256", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141256.addgene-full.gb" }, @@ -6097,7 +6325,10 @@ "plasmid_name": "HS-Ras-mKate2", "sequence-type": "addgene-full", "addgene_id": "105951", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25600237" + ], "kit": null, "att_sites": [ "attB1", @@ -6143,7 +6374,10 @@ "plasmid_name": "pLX304-BCL-XL-499R", "sequence-type": "addgene-full", "addgene_id": "203574", - "references": [], + "references": [ + "https://doi.org/10.1158/1078-0432.CCR-22-0669", + "https://www.ncbi.nlm.nih.gov/pubmed/35776130" + ], "kit": null, "att_sites": [ "attB1", @@ -6202,7 +6436,10 @@ "plasmid_name": "pYPQ291-D573A-SRDX", "sequence-type": "addgene-full", "addgene_id": "129683", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -6233,7 +6470,10 @@ "plasmid_name": "R989-X08-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) G12C", "sequence-type": "addgene-full", "addgene_id": "159540", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -6279,7 +6519,10 @@ "plasmid_name": "pENTR-Mm_MyoGEF(WT)", "sequence-type": "addgene-full", "addgene_id": "136327", - "references": [], + "references": [ + "https://doi.org/10.1038/nm.4364", + "https://www.ncbi.nlm.nih.gov/pubmed/28692064" + ], "kit": null, "att_sites": [ "attL1", @@ -6310,7 +6553,10 @@ "plasmid_name": "pYPQ158", "sequence-type": "depositor-full", "addgene_id": "69307", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL1", @@ -6345,7 +6591,6 @@ "plasmid_name": "pTwist-ENTR-rbm11-203", "sequence-type": "addgene-full", "addgene_id": "192749", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -6375,7 +6620,10 @@ "plasmid_name": "pHAGE-TGFBR2", "sequence-type": "addgene-full", "addgene_id": "116800", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -6426,7 +6674,10 @@ "plasmid_name": "2Flag-pDEST-N", "sequence-type": "addgene-full", "addgene_id": "118371", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attR1", @@ -6475,7 +6726,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP14_nostop", "sequence-type": "addgene-full", "addgene_id": "168698", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -6504,7 +6758,10 @@ "plasmid_name": "pDONR P2R-P3-ECFP", "sequence-type": "depositor-full", "addgene_id": "48353", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -6542,7 +6799,9 @@ "plasmid_name": "pMpGWB102", "sequence-type": "depositor-full", "addgene_id": "68556", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -6589,7 +6848,10 @@ "plasmid_name": "A1-LCD+7F-7Y", "sequence-type": "addgene-full", "addgene_id": "178660", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -6624,7 +6886,10 @@ "plasmid_name": "pNL(CMV)Luc2-Turbo RFP/CMV/WPREdU3", "sequence-type": "addgene-full", "addgene_id": "136959", - "references": [], + "references": [ + "https://doi.org/10.18632/oncotarget.26024", + "https://www.ncbi.nlm.nih.gov/pubmed/30220977" + ], "kit": null, "att_sites": [ "attB1", @@ -6672,7 +6937,6 @@ "plasmid_name": "R777-E292 Hs.RPS6KA2-nostop", "sequence-type": "addgene-full", "addgene_id": "70576", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -6700,7 +6964,10 @@ "plasmid_name": "HD201: pMVP (L3-L2) IRES-eGFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121747", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -6741,7 +7008,10 @@ "plasmid_name": "pDONR223_BMP4_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82937", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -6770,7 +7040,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RIOK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158188", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -6836,7 +7105,10 @@ "plasmid_name": "pGAMA-YAP", "sequence-type": "addgene-full", "addgene_id": "74942", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2016.02.036", + "https://www.ncbi.nlm.nih.gov/pubmed/26947063" + ], "kit": null, "att_sites": [ "attB1", @@ -6882,7 +7154,10 @@ "plasmid_name": "plenti-UBC- IKZF4-3xHA-pGK-PUR", "sequence-type": "addgene-full", "addgene_id": "107384", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -6942,7 +7217,10 @@ "plasmid_name": "TFORF3189", "sequence-type": "addgene-full", "addgene_id": "144665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -7002,7 +7280,10 @@ "plasmid_name": "pBABEpuro-ARAF_S214F", "sequence-type": "depositor-full", "addgene_id": "51078", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI72763", + "https://www.ncbi.nlm.nih.gov/pubmed/24569458" + ], "kit": null, "att_sites": [ "attB1", @@ -7033,7 +7314,10 @@ "plasmid_name": "pDONR221_MFSD10", "sequence-type": "addgene-full", "addgene_id": "131890", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -7064,7 +7348,10 @@ "plasmid_name": "pMuLE ENTR U6 stuffer sgRNA scaffold L1-L4", "sequence-type": "depositor-full", "addgene_id": "62128", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -7101,7 +7388,10 @@ "plasmid_name": "pDONR223_FAM196A_p.Q46R", "sequence-type": "addgene-full", "addgene_id": "81451", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -7133,7 +7423,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_W208L", "sequence-type": "addgene-full", "addgene_id": "221486", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -7193,7 +7486,9 @@ "plasmid_name": "nTALECD for_MSH1 exon21_1397NC", "sequence-type": "addgene-full", "addgene_id": "193381", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "att_sites": [ "attB1", @@ -7240,7 +7535,10 @@ "plasmid_name": "pDONR221-SLC12A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161074", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -7271,7 +7569,10 @@ "plasmid_name": "KK901: pMVP/SB/Zeo-DEST", "sequence-type": "addgene-full", "addgene_id": "121868", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -7311,7 +7612,10 @@ "plasmid_name": "pLX303-PCDH7-a", "sequence-type": "addgene-full", "addgene_id": "108538", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-1267-T", + "https://www.ncbi.nlm.nih.gov/pubmed/27821484" + ], "kit": null, "att_sites": [ "attB1", @@ -7369,7 +7673,10 @@ "plasmid_name": "p6326 pHAGE-P-CMVt-N-HA-GAW-HERC2-F2", "sequence-type": "addgene-full", "addgene_id": "100136", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -7421,7 +7728,10 @@ "plasmid_name": "pDONR223_RHOA_WT", "sequence-type": "addgene-full", "addgene_id": "81805", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -7451,7 +7761,10 @@ "plasmid_name": "pCSDest2-2XNLS-SpCas9-MT3-NLS-3XHA-NLS-TALentry", "sequence-type": "depositor-full", "addgene_id": "69233", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3624", + "https://www.ncbi.nlm.nih.gov/pubmed/26480473" + ], "kit": null, "att_sites": [ "attB1", @@ -7495,7 +7808,10 @@ "plasmid_name": "pMOS010: CheRiff-eGFP channelrhodopsin (plasma membrane)", "sequence-type": "addgene-full", "addgene_id": "163044", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -7560,7 +7876,10 @@ "plasmid_name": "TFORF3109", "sequence-type": "addgene-full", "addgene_id": "144585", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -7620,7 +7939,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP6_nostop", "sequence-type": "addgene-full", "addgene_id": "149309", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -7649,7 +7971,10 @@ "plasmid_name": "pHAGE-AKT3-M339I", "sequence-type": "addgene-full", "addgene_id": "116105", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -7699,7 +8024,10 @@ "plasmid_name": "pDONR223_SYCP1_p.E442K", "sequence-type": "addgene-full", "addgene_id": "81585", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -7731,7 +8059,10 @@ "plasmid_name": "pEBTetD-SNAP-CPAP", "sequence-type": "addgene-full", "addgene_id": "136816", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -7776,7 +8107,6 @@ "plasmid_name": "Hs.KRAS4b S17N", "sequence-type": "depositor-full", "addgene_id": "83156", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -7802,7 +8132,10 @@ "plasmid_name": "pLenti-161K enhancer-ETS-CORE-MUT-minP:fLuc-TK:rLuc", "sequence-type": "addgene-full", "addgene_id": "138367", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attB1", @@ -7864,7 +8197,10 @@ "plasmid_name": "pDEST40-mPTER", "sequence-type": "addgene-full", "addgene_id": "224864", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.03.21.586194", + "https://www.ncbi.nlm.nih.gov/pubmed/38562797" + ], "kit": null, "att_sites": [ "attB1", @@ -7915,7 +8251,10 @@ "plasmid_name": "pDONR223_FBXW7_p.V464E", "sequence-type": "addgene-full", "addgene_id": "82878", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -7944,7 +8283,10 @@ "plasmid_name": "pDONR221-ZNF727", "sequence-type": "depositor-full", "addgene_id": "101466", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -7975,7 +8317,10 @@ "plasmid_name": "pENTR223-PARK7V51G", "sequence-type": "addgene-full", "addgene_id": "115178", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attL1", @@ -8004,7 +8349,10 @@ "plasmid_name": "pHAGE-ERBB2-G776delinsVC", "sequence-type": "addgene-full", "addgene_id": "116331", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -8058,7 +8406,10 @@ "plasmid_name": "MiniCoopR U6:gRNA, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118840", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -8102,7 +8453,10 @@ "plasmid_name": "TFORF3329", "sequence-type": "addgene-full", "addgene_id": "144805", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -8162,7 +8516,10 @@ "plasmid_name": "pDONR223-ZNF268", "sequence-type": "addgene-full", "addgene_id": "88012", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -8191,7 +8548,10 @@ "plasmid_name": "pcDNA3.2/NS5", "sequence-type": "addgene-full", "addgene_id": "120825", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -8242,7 +8602,10 @@ "plasmid_name": "pDONR221_SLC12A5", "sequence-type": "addgene-full", "addgene_id": "131944", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -8273,7 +8636,10 @@ "plasmid_name": "pdRBFC-B2-YC", "sequence-type": "addgene-full", "addgene_id": "74722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.virol.2015.08.023", + "https://www.ncbi.nlm.nih.gov/pubmed/26351203" + ], "kit": null, "att_sites": [ "attB1", @@ -8313,7 +8679,10 @@ "plasmid_name": "DDX56", "sequence-type": "addgene-full", "addgene_id": "155530", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -8356,7 +8725,10 @@ "plasmid_name": "pME-CD44a", "sequence-type": "addgene-full", "addgene_id": "109575", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -8387,7 +8759,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp2", "sequence-type": "addgene-full", "addgene_id": "168863", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -8416,7 +8791,10 @@ "plasmid_name": "pDONR221-SLC35E2B_STOP", "sequence-type": "addgene-full", "addgene_id": "161240", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -8447,7 +8825,10 @@ "plasmid_name": "5'-BirA-FLAG Chtop-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212090", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -8488,7 +8869,10 @@ "plasmid_name": "pDONR221-SLC13A4_STOP", "sequence-type": "depositor-full", "addgene_id": "161099", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -8519,7 +8903,10 @@ "plasmid_name": "pLXI_TRC401 LacZ", "sequence-type": "addgene-full", "addgene_id": "111183", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.44161", + "https://www.ncbi.nlm.nih.gov/pubmed/30860482" + ], "kit": null, "att_sites": [ "attB1", @@ -8576,7 +8963,6 @@ "plasmid_name": "pCWXPG-UBI-Glis3M412", "sequence-type": "addgene-full", "addgene_id": "114301", - "references": [], "kit": null, "file": "data/addgene_plasmids/114301.addgene-full.gb" }, @@ -8585,7 +8971,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12V", "sequence-type": "addgene-full", "addgene_id": "81665", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -8618,7 +9007,10 @@ "plasmid_name": "pMuLE ENTR CMV LacZ L5-L2", "sequence-type": "depositor-full", "addgene_id": "62166", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -8651,7 +9043,6 @@ "plasmid_name": "R777-E147 Hs.PAK1", "sequence-type": "depositor-full", "addgene_id": "70431", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -8680,7 +9071,10 @@ "plasmid_name": "pAG413GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14382", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -8741,7 +9135,10 @@ "plasmid_name": "pEN_TT 3xFLAG Luciferase", "sequence-type": "addgene-full", "addgene_id": "98391", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "att_sites": [ "attL1", @@ -8771,7 +9168,10 @@ "plasmid_name": "p21-S208C/M694V-MEFV", "sequence-type": "addgene-full", "addgene_id": "134709", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "att_sites": [ "attB1", @@ -8828,7 +9228,6 @@ "plasmid_name": "pENT-L1-Kozak-PH-domain-L2", "sequence-type": "addgene-full", "addgene_id": "186354", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -8859,7 +9258,10 @@ "plasmid_name": "JDW 743 (pDONR221-EYFP-hKRAS4B-WT)", "sequence-type": "addgene-full", "addgene_id": "156402", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attL1", @@ -8896,7 +9298,10 @@ "plasmid_name": "pDEST_6xUAS:miRFP670-cetn4", "sequence-type": "addgene-full", "addgene_id": "192357", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.82094", + "https://www.ncbi.nlm.nih.gov/pubmed/36398880" + ], "kit": null, "att_sites": [ "attB1", @@ -8937,7 +9342,10 @@ "plasmid_name": "pAG425GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14418", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -8999,7 +9407,10 @@ "plasmid_name": "pDONR223_GPR137B_p.C212S", "sequence-type": "addgene-full", "addgene_id": "82757", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -9028,7 +9439,10 @@ "plasmid_name": "IY704: pMVP (L1-R5) EF1a promoter", "sequence-type": "addgene-full", "addgene_id": "121693", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -9061,7 +9475,10 @@ "plasmid_name": "MLKG1delKASHec", "sequence-type": "addgene-full", "addgene_id": "130846", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attL1", @@ -9095,7 +9512,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS3", "sequence-type": "depositor-full", "addgene_id": "20242", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "att_sites": [ "attB1", @@ -9128,7 +9548,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-Spike", "sequence-type": "addgene-full", "addgene_id": "168911", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -9157,7 +9580,10 @@ "plasmid_name": "TFORF3047", "sequence-type": "addgene-full", "addgene_id": "144523", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -9217,7 +9643,10 @@ "plasmid_name": "pLX304-DCK*-IRES-Td", "sequence-type": "addgene-full", "addgene_id": "176298", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "file": "data/addgene_plasmids/176298.addgene-full.gb" }, @@ -9226,7 +9655,9 @@ "plasmid_name": "p5E-dr_Ubi (JDW 804)", "sequence-type": "addgene-full", "addgene_id": "224542", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -9257,7 +9688,10 @@ "plasmid_name": "pInducer21-3xFlag-S208C-MEFV", "sequence-type": "addgene-full", "addgene_id": "167019", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-2449-4_12", + "https://www.ncbi.nlm.nih.gov/pubmed/35759198" + ], "kit": null, "att_sites": [ "attB1", @@ -9314,7 +9748,10 @@ "plasmid_name": "pENTR-BPC4 (NON-STOP)", "sequence-type": "addgene-full", "addgene_id": "118686", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attL1", @@ -9345,7 +9782,10 @@ "plasmid_name": "pAFMW-Nbr[R280A,K284A]", "sequence-type": "addgene-full", "addgene_id": "188598", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -9375,7 +9815,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP2_stop", "sequence-type": "addgene-full", "addgene_id": "168545", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -9404,7 +9847,10 @@ "plasmid_name": "p7270 MSCV-N-HA-IRES-PURO Empty", "sequence-type": "addgene-full", "addgene_id": "163302", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01197-14", + "https://www.ncbi.nlm.nih.gov/pubmed/24850740" + ], "kit": null, "att_sites": [ "attR1" @@ -9446,7 +9892,10 @@ "plasmid_name": "TFORF3501", "sequence-type": "addgene-full", "addgene_id": "144977", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -9506,7 +9955,9 @@ "plasmid_name": "pDONR221-HNRNPH1(2of2)", "sequence-type": "addgene-full", "addgene_id": "166180", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -9537,7 +9988,10 @@ "plasmid_name": "pHAGE-EGFR-E709Q", "sequence-type": "addgene-full", "addgene_id": "116243", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -9591,7 +10045,10 @@ "plasmid_name": "pME-CreLite", "sequence-type": "addgene-full", "addgene_id": "131782", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.232", + "https://www.ncbi.nlm.nih.gov/pubmed/32745301" + ], "kit": null, "att_sites": [ "attL1", @@ -9624,7 +10081,10 @@ "plasmid_name": "TFORF3182", "sequence-type": "addgene-full", "addgene_id": "144658", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -9684,7 +10144,10 @@ "plasmid_name": "pB-TAG-NICD", "sequence-type": "addgene-full", "addgene_id": "130934", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.07.090", + "https://www.ncbi.nlm.nih.gov/pubmed/31461642" + ], "kit": null, "att_sites": [ "attB1", @@ -9741,7 +10204,10 @@ "plasmid_name": "pDONR223_PYGL_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82991", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -9770,7 +10236,10 @@ "plasmid_name": "pAG426GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14228", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -9832,7 +10301,10 @@ "plasmid_name": "JK305: pMVP/Blast-DEST", "sequence-type": "addgene-full", "addgene_id": "121855", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -9875,7 +10347,10 @@ "plasmid_name": "pDONR221-In18runon-PTPN22", "sequence-type": "addgene-full", "addgene_id": "195377", - "references": [], + "references": [ + "https://doi.org/10.2337/db15-0322", + "https://www.ncbi.nlm.nih.gov/pubmed/26631741" + ], "kit": null, "att_sites": [ "attL1", @@ -9906,7 +10381,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a M", "sequence-type": "addgene-full", "addgene_id": "89382", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -9960,7 +10438,10 @@ "plasmid_name": "pHAGE-BRAF-D594N", "sequence-type": "addgene-full", "addgene_id": "116138", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116138.addgene-full.gb" }, @@ -9969,7 +10450,10 @@ "plasmid_name": "pLenti-pHluorin_M153R-CD63-mScarlet", "sequence-type": "addgene-full", "addgene_id": "172118", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-15747-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32350252" + ], "kit": null, "att_sites": [ "attB1", @@ -10036,7 +10520,10 @@ "plasmid_name": "pDEST17-UbE2E3", "sequence-type": "addgene-full", "addgene_id": "15789", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "att_sites": [ "attB1", @@ -10068,7 +10555,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.E726K", "sequence-type": "addgene-full", "addgene_id": "82845", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -10097,7 +10587,10 @@ "plasmid_name": "pME-mCherry-NS", "sequence-type": "addgene-full", "addgene_id": "108885", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "att_sites": [ "attL1", @@ -10133,7 +10626,10 @@ "plasmid_name": "pcDNA3.2/NS2A", "sequence-type": "addgene-full", "addgene_id": "120818", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -10183,7 +10679,10 @@ "plasmid_name": "pDONR221_SLC25A16", "sequence-type": "addgene-full", "addgene_id": "131979", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -10214,7 +10713,10 @@ "plasmid_name": "TFORF3362", "sequence-type": "addgene-full", "addgene_id": "144838", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -10274,7 +10776,10 @@ "plasmid_name": "pMLS546", "sequence-type": "addgene-full", "addgene_id": "188883", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "att_sites": [ "attB1", @@ -10307,7 +10812,10 @@ "plasmid_name": "MAC-ACE2", "sequence-type": "addgene-full", "addgene_id": "158381", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -10352,7 +10860,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp12", "sequence-type": "depositor-full", "addgene_id": "168892", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -10381,7 +10892,10 @@ "plasmid_name": "pDONR223_VHL_p.H115Y", "sequence-type": "addgene-full", "addgene_id": "81658", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -10413,7 +10927,10 @@ "plasmid_name": "pLV[TetOn]-Puro-TRE3G>mNeurog2", "sequence-type": "addgene-full", "addgene_id": "198754", - "references": [], + "references": [ + "https://doi.org/10.1038/s41380-021-01117-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33972691" + ], "kit": null, "att_sites": [ "attB1", @@ -10475,7 +10992,10 @@ "plasmid_name": "pDONR223_UNC93B1_WT", "sequence-type": "addgene-full", "addgene_id": "81977", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -10507,7 +11027,9 @@ "plasmid_name": "pMpGWB210", "sequence-type": "depositor-full", "addgene_id": "68601", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -10555,7 +11077,10 @@ "plasmid_name": "pENT-R4-bpFOG-L5", "sequence-type": "addgene-full", "addgene_id": "186369", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL5", @@ -10586,7 +11111,6 @@ "plasmid_name": "pAM-35s-CBL2-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102394", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -10619,7 +11143,10 @@ "plasmid_name": "pLenti CMV/TO Zeo dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134734", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "att_sites": [ "attB1", @@ -10668,7 +11195,10 @@ "plasmid_name": "MAC_N_VPS26C", "sequence-type": "addgene-full", "addgene_id": "209689", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -10713,7 +11243,10 @@ "plasmid_name": "pDE43-MCKq26", "sequence-type": "depositor-full", "addgene_id": "27336", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "att_sites": [ "attR3", @@ -10747,7 +11280,10 @@ "plasmid_name": "IGF2BP1", "sequence-type": "addgene-full", "addgene_id": "155676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -10790,7 +11326,10 @@ "plasmid_name": "SITS-ccdb-EGFP", "sequence-type": "addgene-full", "addgene_id": "118752", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB3", @@ -10843,7 +11382,10 @@ "plasmid_name": "actc1b-mKate2-rab39ba", "sequence-type": "addgene-full", "addgene_id": "109633", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -10885,7 +11427,10 @@ "plasmid_name": "TFORF3241", "sequence-type": "addgene-full", "addgene_id": "144717", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -10945,7 +11490,10 @@ "plasmid_name": "pHAGE-FLT1-R781Q", "sequence-type": "addgene-full", "addgene_id": "116397", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -10999,7 +11547,10 @@ "plasmid_name": "pBabe_puro_DEST_Flag_TNIK", "sequence-type": "addgene-full", "addgene_id": "45276", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-12-0592", + "https://www.ncbi.nlm.nih.gov/pubmed/23764425" + ], "kit": null, "att_sites": [ "attB1", @@ -11032,7 +11583,10 @@ "plasmid_name": "pDONR223_EYS_p.R26Q", "sequence-type": "addgene-full", "addgene_id": "81523", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -11064,7 +11618,10 @@ "plasmid_name": "pAAVS1-P-CAG-mCh", "sequence-type": "depositor-full", "addgene_id": "80492", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "att_sites": [ "attB1", @@ -11122,7 +11679,10 @@ "plasmid_name": "pSF279", "sequence-type": "addgene-full", "addgene_id": "167674", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attL1", @@ -11158,7 +11718,6 @@ "plasmid_name": "R777-E135 Hs.MRAS", "sequence-type": "depositor-full", "addgene_id": "70419", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -11186,7 +11745,10 @@ "plasmid_name": "pDONR221_SLC22A10", "sequence-type": "addgene-full", "addgene_id": "132046", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -11217,7 +11779,9 @@ "plasmid_name": "pDRFLIP35", "sequence-type": "depositor-full", "addgene_id": "65513", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65513.depositor-full.gb" }, @@ -11226,7 +11790,10 @@ "plasmid_name": "Tol2-krt4-RFP", "sequence-type": "addgene-full", "addgene_id": "97149", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "att_sites": [ "attB1", @@ -11269,7 +11836,6 @@ "plasmid_name": "pDONR221-usp25", "sequence-type": "addgene-full", "addgene_id": "192733", - "references": [], "kit": null, "file": "data/addgene_plasmids/192733.addgene-full.gb" }, @@ -11278,7 +11844,6 @@ "plasmid_name": "R777-E099 Hs.GRB2", "sequence-type": "depositor-full", "addgene_id": "70383", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -11306,7 +11871,10 @@ "plasmid_name": "pGAMA-empty", "sequence-type": "depositor-full", "addgene_id": "74755", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2016.02.036", + "https://www.ncbi.nlm.nih.gov/pubmed/26947063" + ], "kit": null, "att_sites": [ "attR1", @@ -11357,7 +11925,10 @@ "plasmid_name": "pDL16", "sequence-type": "addgene-full", "addgene_id": "175908", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -11388,7 +11959,6 @@ "plasmid_name": "pLenti6.3_HES7", "sequence-type": "addgene-full", "addgene_id": "124075", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -11449,7 +12019,10 @@ "plasmid_name": "pCFJ907", "sequence-type": "depositor-full", "addgene_id": "44473", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attR3", @@ -11486,7 +12059,10 @@ "plasmid_name": "pKM1137", "sequence-type": "depositor-full", "addgene_id": "8841", - "references": [], + "references": [ + "https://doi.org/10.1016/S0014-5793%2803%2900070-X", + "https://www.ncbi.nlm.nih.gov/pubmed/12606030" + ], "kit": null, "att_sites": [ "attR1", @@ -11527,7 +12103,10 @@ "plasmid_name": "pHAGE-KRAS", "sequence-type": "addgene-full", "addgene_id": "116755", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -11582,7 +12161,6 @@ "plasmid_name": "pDONR221-ACE2", "sequence-type": "addgene-full", "addgene_id": "158438", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -11611,7 +12189,10 @@ "plasmid_name": "pAG303GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14157", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -11670,7 +12251,10 @@ "plasmid_name": "p2R3z-AtU3b-tRNA-ccdB-gRNA", "sequence-type": "addgene-full", "addgene_id": "118390", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "att_sites": [ "attL3", @@ -11707,7 +12291,10 @@ "plasmid_name": "pRECLV103_PGBD5_B", "sequence-type": "addgene-full", "addgene_id": "168053", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.3866", + "https://www.ncbi.nlm.nih.gov/pubmed/28504702" + ], "kit": null, "att_sites": [ "attB2" @@ -11770,7 +12357,10 @@ "plasmid_name": "pDONR223-DDR1", "sequence-type": "addgene-full", "addgene_id": "23910", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -11802,7 +12392,6 @@ "plasmid_name": "IDG_SCN2B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161624", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -11861,7 +12450,10 @@ "plasmid_name": "pCM5.44", "sequence-type": "depositor-full", "addgene_id": "19389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -11892,7 +12484,10 @@ "plasmid_name": "pHAGE-SIRPB1-W183*", "sequence-type": "addgene-full", "addgene_id": "116681", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -11947,7 +12542,10 @@ "plasmid_name": "pDONR221_SLC35F3", "sequence-type": "addgene-full", "addgene_id": "132109", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -11978,7 +12576,10 @@ "plasmid_name": "pT2-cryR;cldn5bCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90154", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -12026,7 +12627,10 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ashL344P-mCerulean", "sequence-type": "depositor-full", "addgene_id": "69581", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1311126110", + "https://www.ncbi.nlm.nih.gov/pubmed/24006363" + ], "kit": null, "att_sites": [ "attB1", @@ -12092,7 +12696,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO R4-R3", "sequence-type": "depositor-full", "addgene_id": "62100", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -12127,7 +12734,6 @@ "plasmid_name": "R777-E173 Hs.PIK3R2", "sequence-type": "depositor-full", "addgene_id": "70457", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -12139,7 +12745,10 @@ "plasmid_name": "pDONR221-SLC7A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161410", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -12170,7 +12779,10 @@ "plasmid_name": "tetO-HEY2", "sequence-type": "addgene-full", "addgene_id": "170691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -12232,7 +12844,10 @@ "plasmid_name": "pAG425GAL-ccdB-HA", "sequence-type": "addgene-full", "addgene_id": "14249", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -12293,7 +12908,10 @@ "plasmid_name": "pDONR221-SLC22A31_STOP", "sequence-type": "depositor-full", "addgene_id": "161202", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -12324,7 +12942,10 @@ "plasmid_name": "pSEM234 - pEXP[Pmlc-1 | mCherry(2xNLS) | cbr-tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159795", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000302", + "https://www.ncbi.nlm.nih.gov/pubmed/32908967" + ], "kit": null, "att_sites": [ "attB1", @@ -12358,7 +12979,10 @@ "plasmid_name": "pHAGE-PIK3CB-R604Pfs*29", "sequence-type": "addgene-full", "addgene_id": "116561", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -12413,7 +13037,10 @@ "plasmid_name": "Crimson/P2A-NLS/HA-HumBeta (pSLIK2)", "sequence-type": "addgene-full", "addgene_id": "113857", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0200955", + "https://www.ncbi.nlm.nih.gov/pubmed/30110337" + ], "kit": null, "att_sites": [ "attB1", @@ -12483,7 +13110,10 @@ "plasmid_name": "pDONR223_SDHB_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83005", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -12512,7 +13142,10 @@ "plasmid_name": "141_pT3TS_iCre", "sequence-type": "addgene-full", "addgene_id": "171793", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "att_sites": [ "attB1", @@ -12558,7 +13191,10 @@ "plasmid_name": "pDONR221-TMEM165", "sequence-type": "addgene-full", "addgene_id": "132272", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -12589,7 +13225,10 @@ "plasmid_name": "Nup98-pDONR221", "sequence-type": "addgene-full", "addgene_id": "124241", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbamcr.2017.05.020", + "https://www.ncbi.nlm.nih.gov/pubmed/28554770" + ], "kit": null, "att_sites": [ "attL1", @@ -12620,7 +13259,10 @@ "plasmid_name": "MOSMO_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176975", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -12672,7 +13314,6 @@ "plasmid_name": "Hs.KRAS4b G12C", "sequence-type": "depositor-full", "addgene_id": "83130", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -12701,7 +13342,10 @@ "plasmid_name": "pB_35S/mEGFP", "sequence-type": "addgene-full", "addgene_id": "135320", - "references": [], + "references": [ + "https://doi.org/10.1111/ppl.13079", + "https://www.ncbi.nlm.nih.gov/pubmed/32096870" + ], "kit": null, "att_sites": [ "attB2" @@ -12736,7 +13380,10 @@ "plasmid_name": "pCR8/GW/TOPO-ETS1", "sequence-type": "addgene-full", "addgene_id": "98621", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -12765,7 +13412,6 @@ "plasmid_name": "g15s pDONR", "sequence-type": "addgene-full", "addgene_id": "117463", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -12796,7 +13442,10 @@ "plasmid_name": "pDONR223_DDIT3_WT", "sequence-type": "addgene-full", "addgene_id": "82107", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -12825,7 +13474,10 @@ "plasmid_name": "C453-E17: attB4-PGKp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162976", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -12854,7 +13506,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 SKICH (1-140D)", "sequence-type": "addgene-full", "addgene_id": "175768", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -12907,7 +13562,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp13", "sequence-type": "depositor-full", "addgene_id": "168910", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -12936,7 +13594,10 @@ "plasmid_name": "pENTR223-BFRF1", "sequence-type": "addgene-full", "addgene_id": "195801", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -12965,7 +13626,6 @@ "plasmid_name": "pcDNA3.1-ccdB-Renilla", "sequence-type": "addgene-full", "addgene_id": "87065", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -13018,7 +13678,10 @@ "plasmid_name": "Flag-HA-VCPIP1", "sequence-type": "addgene-full", "addgene_id": "22592", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -13063,7 +13726,10 @@ "plasmid_name": "pDONR221_SLC4A11", "sequence-type": "addgene-full", "addgene_id": "132192", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -13094,7 +13760,10 @@ "plasmid_name": "pENTR2-L3-SfoI-EGFP-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141018", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL3", @@ -13137,7 +13806,10 @@ "plasmid_name": "pcDNA5FRT/TO-RNF185-GFP", "sequence-type": "addgene-full", "addgene_id": "113498", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -13183,7 +13855,10 @@ "plasmid_name": "pLenti-Zyxin-B (aa309-564)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187694", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "att_sites": [ "attB1", @@ -13246,7 +13921,6 @@ "plasmid_name": "IDG_TMEM63B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161682", - "references": [], "kit": null, "file": "data/addgene_plasmids/161682.addgene-full.gb" }, @@ -13255,7 +13929,10 @@ "plasmid_name": "mTALEAD 16S rRNA-1131T10C", "sequence-type": "addgene-full", "addgene_id": "210836", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "att_sites": [ "attB1", @@ -13294,7 +13971,9 @@ "plasmid_name": "pMpGWB301", "sequence-type": "depositor-full", "addgene_id": "68629", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -13340,7 +14019,10 @@ "plasmid_name": "HSP70l-APEX2-GBP in pDEST-Tol2-pA2-acrys-mCherry", "sequence-type": "addgene-full", "addgene_id": "71282", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -13385,7 +14067,10 @@ "plasmid_name": "pHAGE-IGF1R-E1356K", "sequence-type": "addgene-full", "addgene_id": "116413", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -13439,7 +14124,10 @@ "plasmid_name": "pDONR221-SLC19A1_STOP", "sequence-type": "depositor-full", "addgene_id": "161432", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -13470,7 +14158,10 @@ "plasmid_name": "AAVS1-TRE-SHH", "sequence-type": "addgene-full", "addgene_id": "134350", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-019-0085-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30936566" + ], "kit": null, "att_sites": [ "attB1", @@ -13521,7 +14212,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16 E7 H73A", "sequence-type": "addgene-full", "addgene_id": "191547", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "att_sites": [ "attB1", @@ -13567,7 +14261,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab11A", "sequence-type": "addgene-full", "addgene_id": "166430", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -13611,7 +14304,10 @@ "plasmid_name": "pINDUCER20-Flag-NLS-hSPDEF delta1", "sequence-type": "addgene-full", "addgene_id": "100874", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2017.03.048", + "https://www.ncbi.nlm.nih.gov/pubmed/28390865" + ], "kit": null, "att_sites": [ "attB1", @@ -13665,7 +14361,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term RNPS1", "sequence-type": "addgene-full", "addgene_id": "187574", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -13709,7 +14408,9 @@ "plasmid_name": "pDestTol2-QUAS:mApple-he1.1:CFP", "sequence-type": "addgene-full", "addgene_id": "184812", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "att_sites": [ "attB1", @@ -13756,7 +14457,10 @@ "plasmid_name": "791 p3E-2A-pCS2MCSpA v2", "sequence-type": "addgene-full", "addgene_id": "195973", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL3", @@ -13790,7 +14494,10 @@ "plasmid_name": "pHAGE-OXA1L", "sequence-type": "addgene-full", "addgene_id": "116768", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -13840,7 +14547,10 @@ "plasmid_name": "pDONR221_SLC4A8", "sequence-type": "addgene-full", "addgene_id": "132300", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -13871,7 +14581,10 @@ "plasmid_name": "pSK234", "sequence-type": "addgene-full", "addgene_id": "131149", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/29056345" + ], "kit": null, "att_sites": [ "attR1", @@ -13922,7 +14635,10 @@ "plasmid_name": "pHAGE-PIK3CA-E726K", "sequence-type": "addgene-full", "addgene_id": "116488", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -13972,7 +14688,6 @@ "plasmid_name": "pENTR-CreERT2", "sequence-type": "addgene-full", "addgene_id": "139547", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -14006,7 +14721,10 @@ "plasmid_name": "pDEST40-2XFL-Src-KD", "sequence-type": "addgene-full", "addgene_id": "140313", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -14058,7 +14776,10 @@ "plasmid_name": "pT3-EF1\u03b1-Dest", "sequence-type": "addgene-full", "addgene_id": "133299", - "references": [], + "references": [ + "https://doi.org/10.1002/hep.22169", + "https://www.ncbi.nlm.nih.gov/pubmed/18214995" + ], "kit": null, "att_sites": [ "attR1", @@ -14104,7 +14825,6 @@ "plasmid_name": "p667-UBC-BRSK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135252", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -14169,7 +14889,6 @@ "plasmid_name": "IDG_KCNK4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161619", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -14228,7 +14947,10 @@ "plasmid_name": "pAUC40", "sequence-type": "depositor-full", "addgene_id": "71298", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-2958.2009.06906.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19843225" + ], "kit": null, "att_sites": [ "attR1", @@ -14254,7 +14976,10 @@ "plasmid_name": "pT3-N90-beta-catenin", "sequence-type": "addgene-full", "addgene_id": "31785", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0706578104", + "https://www.ncbi.nlm.nih.gov/pubmed/17785413" + ], "kit": null, "att_sites": [ "attB1", @@ -14300,7 +15025,10 @@ "plasmid_name": "pAG424GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14200", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -14362,7 +15090,10 @@ "plasmid_name": "pDONR221_SLC35D1", "sequence-type": "addgene-full", "addgene_id": "132134", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132134.addgene-full.gb" }, @@ -14371,7 +15102,10 @@ "plasmid_name": "pLX307-CRBN-3F-BirA", "sequence-type": "addgene-full", "addgene_id": "220146", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-024-01590-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38514884" + ], "kit": null, "att_sites": [ "attB1", @@ -14434,7 +15168,6 @@ "plasmid_name": "pEF 4r-GUS-3r", "sequence-type": "depositor-full", "addgene_id": "20097", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -14466,7 +15199,10 @@ "plasmid_name": "pT2-cryR;basPEgfp", "sequence-type": "addgene-full", "addgene_id": "90169", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -14516,7 +15252,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0483-luc2", "sequence-type": "addgene-full", "addgene_id": "214636", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -14561,7 +15300,9 @@ "plasmid_name": "pMpGWB402", "sequence-type": "depositor-full", "addgene_id": "68667", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -14610,7 +15351,10 @@ "plasmid_name": "pDONR223_SIP1_WT", "sequence-type": "addgene-full", "addgene_id": "82241", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -14639,7 +15383,10 @@ "plasmid_name": "pDest-624 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161879", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -14679,7 +15426,6 @@ "plasmid_name": "pAG416-GAL-hnRNPA1", "sequence-type": "addgene-full", "addgene_id": "181710", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -14733,7 +15479,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS-Ala271", "sequence-type": "addgene-full", "addgene_id": "158631", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attL1", @@ -14762,7 +15511,6 @@ "plasmid_name": "BRAF - A12G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216606", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -14792,7 +15540,10 @@ "plasmid_name": "E3_pENTR_L3-L2_NG_G1397-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171735", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attL2", @@ -14828,7 +15579,10 @@ "plasmid_name": "pJRA106", "sequence-type": "addgene-full", "addgene_id": "209339", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -14868,7 +15622,10 @@ "plasmid_name": "pENTR-R4R3-stop", "sequence-type": "addgene-full", "addgene_id": "113745", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -14907,7 +15664,10 @@ "plasmid_name": "pDONR223_OR2T33_p.F164V", "sequence-type": "addgene-full", "addgene_id": "81373", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -14939,7 +15699,10 @@ "plasmid_name": "MAC_N_ELF3", "sequence-type": "addgene-full", "addgene_id": "187740", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -14984,7 +15747,10 @@ "plasmid_name": "pMDJ80 - pENTR[4-1] - Promoter - Psmu-2 (no_start)", "sequence-type": "addgene-full", "addgene_id": "159887", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL4", @@ -15015,7 +15781,10 @@ "plasmid_name": "CFAP410_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176948", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -15067,7 +15836,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-LGALS1", "sequence-type": "addgene-full", "addgene_id": "175755", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -15118,7 +15890,10 @@ "plasmid_name": "pENTR223-BILF2", "sequence-type": "addgene-full", "addgene_id": "195788", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -15147,7 +15922,10 @@ "plasmid_name": "pJAK1.B", "sequence-type": "depositor-full", "addgene_id": "29462", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2009.07.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19647016" + ], "kit": null, "att_sites": [ "attR1", @@ -15174,7 +15952,10 @@ "plasmid_name": "p415GPD-3xHA-GW", "sequence-type": "depositor-full", "addgene_id": "63781", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63781.depositor-full.gb" }, @@ -15183,7 +15964,10 @@ "plasmid_name": "pHAGE-PTEN-N12T", "sequence-type": "addgene-full", "addgene_id": "116627", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -15237,7 +16021,10 @@ "plasmid_name": "pENTR2-L3-SfoI-EGFP-secNanoLuc-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141025", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL3", @@ -15282,7 +16069,10 @@ "plasmid_name": "pCS-flt4um159-HA", "sequence-type": "depositor-full", "addgene_id": "67704", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "att_sites": [ "attB1", @@ -15324,7 +16114,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP9", "sequence-type": "addgene-full", "addgene_id": "158360", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -15369,7 +16162,6 @@ "plasmid_name": "R777-E203 Hs.PRKAG3", "sequence-type": "depositor-full", "addgene_id": "70487", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -15397,7 +16189,10 @@ "plasmid_name": "pAG413GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14334", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -15458,7 +16253,10 @@ "plasmid_name": "pBRC_double_attB_GFP_donor", "sequence-type": "addgene-full", "addgene_id": "169692", - "references": [], + "references": [ + "https://doi.org/10.1093/genetics/iyab206", + "https://www.ncbi.nlm.nih.gov/pubmed/34791215" + ], "kit": null, "att_sites": [ "attR1" @@ -15496,7 +16294,10 @@ "plasmid_name": "pBABEpuro-ARAF_D429A", "sequence-type": "depositor-full", "addgene_id": "51080", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI72763", + "https://www.ncbi.nlm.nih.gov/pubmed/24569458" + ], "kit": null, "att_sites": [ "attB1", @@ -15527,7 +16328,10 @@ "plasmid_name": "pMF-FU_TetO_GW_PPARG2", "sequence-type": "addgene-full", "addgene_id": "193289", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abn7298", + "https://www.ncbi.nlm.nih.gov/pubmed/35714187" + ], "kit": null, "att_sites": [ "attB1", @@ -15585,7 +16389,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Fn", "sequence-type": "addgene-full", "addgene_id": "108864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "file": "data/addgene_plasmids/108864.addgene-full.gb" }, @@ -15594,7 +16401,10 @@ "plasmid_name": "pDONR223_POT1_p.L265H", "sequence-type": "addgene-full", "addgene_id": "81559", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -15626,7 +16436,10 @@ "plasmid_name": "pEN_TT BirA* w ccdB", "sequence-type": "addgene-full", "addgene_id": "192310", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -15659,7 +16472,10 @@ "plasmid_name": "pDONR221_SLC1A7", "sequence-type": "addgene-full", "addgene_id": "131998", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -15691,7 +16507,10 @@ "plasmid_name": "pCZGY2254", "sequence-type": "addgene-full", "addgene_id": "101247", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26376", + "https://www.ncbi.nlm.nih.gov/pubmed/28767038" + ], "kit": null, "att_sites": [ "attL1", @@ -15722,7 +16541,10 @@ "plasmid_name": "actc1b-mKate2-rab5ab", "sequence-type": "addgene-full", "addgene_id": "109649", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -15764,7 +16586,10 @@ "plasmid_name": "pENTR-ZmIAA14", "sequence-type": "addgene-full", "addgene_id": "188436", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -15795,7 +16620,10 @@ "plasmid_name": "TFORF3525", "sequence-type": "depositor-full", "addgene_id": "145001", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -15855,7 +16683,10 @@ "plasmid_name": "pinducer 20 DN-KASH", "sequence-type": "addgene-full", "addgene_id": "125554", - "references": [], + "references": [ + "https://doi.org/10.1007/s12195-019-00579-y", + "https://www.ncbi.nlm.nih.gov/pubmed/31719915" + ], "kit": null, "att_sites": [ "attB1", @@ -15911,7 +16742,10 @@ "plasmid_name": "pDONR221_SLC22A4", "sequence-type": "addgene-full", "addgene_id": "131903", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -15943,7 +16777,10 @@ "plasmid_name": "TFORF3366", "sequence-type": "addgene-full", "addgene_id": "144842", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -16004,7 +16841,10 @@ "plasmid_name": "pEBTetBl-CLIP-CP110", "sequence-type": "addgene-full", "addgene_id": "136851", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -16049,7 +16889,10 @@ "plasmid_name": "pDONR223_SLC46A1_p.W299S", "sequence-type": "addgene-full", "addgene_id": "81622", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -16081,7 +16924,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-mir-2a-1", "sequence-type": "depositor-full", "addgene_id": "46664", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -16131,7 +16977,10 @@ "plasmid_name": "pDONR221-SLC25A37_STOP", "sequence-type": "addgene-full", "addgene_id": "161207", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -16162,7 +17011,10 @@ "plasmid_name": "pDONR-U6gRNA-PGKpuro2ABFP", "sequence-type": "addgene-full", "addgene_id": "136405", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03731-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29654229" + ], "kit": null, "att_sites": [ "attL1", @@ -16205,7 +17057,9 @@ "plasmid_name": "p5E lexOP-c-fos min pro (JDW 1254)", "sequence-type": "addgene-full", "addgene_id": "224477", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -16240,7 +17094,6 @@ "plasmid_name": "pDEST-Spe4-Rfa-mCherry-stop", "sequence-type": "addgene-full", "addgene_id": "186388", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -16285,7 +17138,10 @@ "plasmid_name": "actc1b-mKate2-CDC42-DN", "sequence-type": "addgene-full", "addgene_id": "109532", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -16327,7 +17183,10 @@ "plasmid_name": "TFORF2940", "sequence-type": "addgene-full", "addgene_id": "144416", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -16387,7 +17246,10 @@ "plasmid_name": "pENTR223-BcLF1", "sequence-type": "addgene-full", "addgene_id": "198581", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -16416,7 +17278,10 @@ "plasmid_name": "pDONR221-SLC27A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161033", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -16447,7 +17312,10 @@ "plasmid_name": "pDONR223_AKT1_p.R370C", "sequence-type": "addgene-full", "addgene_id": "81416", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -16480,7 +17348,10 @@ "plasmid_name": "pEPYCeGM0010", "sequence-type": "addgene-full", "addgene_id": "196144", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attL1", @@ -16504,7 +17375,10 @@ "plasmid_name": "p3E-rab3da", "sequence-type": "addgene-full", "addgene_id": "109706", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -16535,7 +17409,10 @@ "plasmid_name": "pBA cMYC-AIP2", "sequence-type": "addgene-full", "addgene_id": "118667", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -16579,7 +17456,10 @@ "plasmid_name": "pGWB520", "sequence-type": "depositor-full", "addgene_id": "74862", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -16627,7 +17507,9 @@ "plasmid_name": "pDONR221-DDX39A", "sequence-type": "addgene-full", "addgene_id": "166161", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -16658,7 +17540,10 @@ "plasmid_name": "pHAGE-BRAF-E695K", "sequence-type": "addgene-full", "addgene_id": "116142", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -16713,7 +17598,10 @@ "plasmid_name": "pAWH-Rluc-let-7-Poly(A)", "sequence-type": "depositor-full", "addgene_id": "50556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.09.024", + "https://www.ncbi.nlm.nih.gov/pubmed/23123195" + ], "kit": null, "att_sites": [ "attB1", @@ -16743,7 +17631,10 @@ "plasmid_name": "pME VIVIT NS", "sequence-type": "addgene-full", "addgene_id": "188699", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111817", + "https://www.ncbi.nlm.nih.gov/pubmed/36516756" + ], "kit": null, "att_sites": [ "attL1", @@ -16774,7 +17665,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SOD1", "sequence-type": "addgene-full", "addgene_id": "222568", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -16819,7 +17712,6 @@ "plasmid_name": "pCWXPGR-pTF-BDNF", "sequence-type": "addgene-full", "addgene_id": "114292", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -16879,7 +17771,10 @@ "plasmid_name": "pYPQ282 (TsCas12a)", "sequence-type": "addgene-full", "addgene_id": "138114", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -16911,7 +17806,6 @@ "plasmid_name": "p5E-elavl3", "sequence-type": "depositor-full", "addgene_id": "72640", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -16946,7 +17840,10 @@ "plasmid_name": "pDONR221-kcnk7", "sequence-type": "addgene-full", "addgene_id": "208991", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -16978,7 +17875,10 @@ "plasmid_name": "pDONR223_C1orf150_WT", "sequence-type": "addgene-full", "addgene_id": "81842", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -17010,7 +17910,9 @@ "plasmid_name": "pLenti Dest BlastR R1-R2", "sequence-type": "addgene-full", "addgene_id": "84574", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "att_sites": [ "attR1", @@ -17071,7 +17973,10 @@ "plasmid_name": "pENTR4-FLAG (w210-2)", "sequence-type": "addgene-full", "addgene_id": "17423", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -17096,7 +18001,6 @@ "plasmid_name": "R777-E069 Hs.EXOC2", "sequence-type": "depositor-full", "addgene_id": "70353", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -17124,7 +18028,9 @@ "plasmid_name": "pDONR221-Lifeact- mScarlet-HA (JDW 1247)", "sequence-type": "addgene-full", "addgene_id": "224538", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224538.addgene-full.gb" }, @@ -17133,7 +18039,10 @@ "plasmid_name": "pDONR221-SLC5A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161348", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -17164,7 +18073,6 @@ "plasmid_name": "R777-E350 Hs.TIAM2-nostop", "sequence-type": "depositor-full", "addgene_id": "70634", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -17176,7 +18084,10 @@ "plasmid_name": "TFORF3083", "sequence-type": "addgene-full", "addgene_id": "144559", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -17236,7 +18147,10 @@ "plasmid_name": "PB-Tal1", "sequence-type": "depositor-full", "addgene_id": "60670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "att_sites": [ "attB1", @@ -17276,7 +18190,10 @@ "plasmid_name": "pAG306GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14187", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -17335,7 +18252,10 @@ "plasmid_name": "pDONR221-RHCG_STOP", "sequence-type": "depositor-full", "addgene_id": "161061", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -17366,7 +18286,10 @@ "plasmid_name": "pHAGE-EGFR-E709_T710delinsD", "sequence-type": "addgene-full", "addgene_id": "116239", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -17420,7 +18343,10 @@ "plasmid_name": "pDONR223_NOSIP_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82970", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -17449,7 +18375,10 @@ "plasmid_name": "IH201: pMVP (L5-L4) 3x HA epitope tag", "sequence-type": "addgene-full", "addgene_id": "121700", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -17482,7 +18411,10 @@ "plasmid_name": "pVTU-Dest", "sequence-type": "addgene-full", "addgene_id": "105088", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-59745-289-2_14", + "https://www.ncbi.nlm.nih.gov/pubmed/19083185" + ], "kit": null, "att_sites": [ "attR1", @@ -17518,7 +18450,10 @@ "plasmid_name": "actc1b-mKate2-rab11a", "sequence-type": "addgene-full", "addgene_id": "109594", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -17560,7 +18495,10 @@ "plasmid_name": "pDONR223 HCoV-229E NSP9_nostop", "sequence-type": "addgene-full", "addgene_id": "168736", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -17589,7 +18527,6 @@ "plasmid_name": "R777-E279 Hs.RHOB", "sequence-type": "depositor-full", "addgene_id": "70563", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -17618,7 +18555,10 @@ "plasmid_name": "hSyn-GW-dCas9-SET2-IRES2-mCherry", "sequence-type": "addgene-full", "addgene_id": "202089", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2021.08.008", + "https://www.ncbi.nlm.nih.gov/pubmed/34480866" + ], "kit": null, "att_sites": [ "attB1", @@ -17658,7 +18598,10 @@ "plasmid_name": "pACT2-Dhr1", "sequence-type": "addgene-full", "addgene_id": "100003", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attB1", @@ -17694,7 +18637,10 @@ "plasmid_name": "5'-3xFLAG Mta1-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212071", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -17734,7 +18680,10 @@ "plasmid_name": "pDONR223_BRAF_p.L597Q", "sequence-type": "addgene-full", "addgene_id": "81684", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -17767,7 +18716,10 @@ "plasmid_name": "pDONR223_KIF2B_p.E211K", "sequence-type": "addgene-full", "addgene_id": "81564", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -17799,7 +18751,10 @@ "plasmid_name": "pYPQ239", "sequence-type": "addgene-full", "addgene_id": "108859", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "att_sites": [ "attL1", @@ -17831,7 +18786,10 @@ "plasmid_name": "pDONR221-SLC22A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161141", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -17862,7 +18820,10 @@ "plasmid_name": "pDONR223_ABCB9_WT", "sequence-type": "addgene-full", "addgene_id": "82899", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -17892,7 +18853,10 @@ "plasmid_name": "R619-M88-303: CMV51p> MERS-CoV S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166013", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -17949,7 +18913,10 @@ "plasmid_name": "TFORF3274", "sequence-type": "addgene-full", "addgene_id": "144750", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -18009,7 +18976,10 @@ "plasmid_name": "p3E-rab1ab", "sequence-type": "addgene-full", "addgene_id": "109674", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -18040,7 +19010,6 @@ "plasmid_name": "pENTR_AtU6p_BsaI_gRNA", "sequence-type": "addgene-full", "addgene_id": "225987", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -18072,7 +19041,6 @@ "plasmid_name": "pENTRY4_ Dja6_1", "sequence-type": "addgene-full", "addgene_id": "126894", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -18107,7 +19075,10 @@ "plasmid_name": "pDONR223-ZNF786", "sequence-type": "addgene-full", "addgene_id": "88068", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -18136,7 +19107,6 @@ "plasmid_name": "pGP5G-ccdB", "sequence-type": "depositor-full", "addgene_id": "83879", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -18181,7 +19151,10 @@ "plasmid_name": "pDONR223_TPK1_p.E81Q", "sequence-type": "addgene-full", "addgene_id": "82802", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -18210,7 +19183,10 @@ "plasmid_name": "RPS18_pLX307", "sequence-type": "addgene-full", "addgene_id": "98370", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -18270,7 +19246,10 @@ "plasmid_name": "pDONR221 CARD8 PAM R394E", "sequence-type": "addgene-full", "addgene_id": "169980", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -18301,7 +19280,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp14", "sequence-type": "depositor-full", "addgene_id": "168824", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -18330,7 +19312,10 @@ "plasmid_name": "pMDC-pRPS2-HPB", "sequence-type": "depositor-full", "addgene_id": "32077", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2008.03736.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19000159" + ], "kit": null, "att_sites": [ "attR1", @@ -18377,7 +19362,10 @@ "plasmid_name": "ATX3-77Q-R388G", "sequence-type": "addgene-full", "addgene_id": "184251", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "att_sites": [ "attB2" @@ -18410,7 +19398,10 @@ "plasmid_name": "JJ802: pMAGIC (L1-R5) hU6::SaCas9 gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121812", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -18444,7 +19435,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_M", "sequence-type": "addgene-full", "addgene_id": "169400", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -18487,7 +19477,10 @@ "plasmid_name": "pDEST53-LRRK2-G2019S", "sequence-type": "addgene-full", "addgene_id": "25045", - "references": [], + "references": [ + "https://doi.org/10.1016/j.nbd.2006.04.001", + "https://www.ncbi.nlm.nih.gov/pubmed/16750377" + ], "kit": null, "att_sites": [ "attB1", @@ -18539,7 +19532,10 @@ "plasmid_name": "pYPQ230-RV", "sequence-type": "addgene-full", "addgene_id": "188544", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02929-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37122009" + ], "kit": null, "att_sites": [ "attL1", @@ -18571,7 +19567,10 @@ "plasmid_name": "pGCS1", "sequence-type": "addgene-full", "addgene_id": "85730", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -18618,7 +19617,6 @@ "plasmid_name": "pLenti-EF1a-Luciferase-IRES-Blast-WPRE", "sequence-type": "addgene-full", "addgene_id": "108542", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -18684,7 +19682,10 @@ "plasmid_name": "pDONR221-SLCO1B7_STOP", "sequence-type": "depositor-full", "addgene_id": "161378", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -18715,7 +19716,10 @@ "plasmid_name": "A1-LCD-4R-2K+5D", "sequence-type": "addgene-full", "addgene_id": "178681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -18750,7 +19754,9 @@ "plasmid_name": "pPB-cT3G-cERP2-KDM5B", "sequence-type": "addgene-full", "addgene_id": "222555", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -18797,7 +19803,6 @@ "plasmid_name": "p667-UBC-AKT1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189889", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -18863,7 +19868,9 @@ "plasmid_name": "pME-LexA-mODC-LexOP-35SCaMV (JDW 1348)", "sequence-type": "addgene-full", "addgene_id": "224505", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -18900,7 +19907,10 @@ "plasmid_name": "pDONR221-SLC7A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161375", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -18931,7 +19941,10 @@ "plasmid_name": "pDONR223_CD79B_WT", "sequence-type": "addgene-full", "addgene_id": "81750", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -18963,7 +19976,10 @@ "plasmid_name": "pGLTR-X-GFP", "sequence-type": "depositor-full", "addgene_id": "58245", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "file": "data/addgene_plasmids/58245.depositor-full.gb" }, @@ -18972,7 +19988,10 @@ "plasmid_name": "592 p3e-EST etv2 3\u2019UTR", "sequence-type": "depositor-full", "addgene_id": "49003", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "att_sites": [ "attL3", @@ -19003,7 +20022,10 @@ "plasmid_name": "pDONR223-ZNF99", "sequence-type": "addgene-full", "addgene_id": "88127", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -19032,7 +20054,10 @@ "plasmid_name": "TFORF3454", "sequence-type": "addgene-full", "addgene_id": "144930", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -19092,7 +20117,10 @@ "plasmid_name": "PRPF40A", "sequence-type": "addgene-full", "addgene_id": "155851", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -19135,7 +20163,10 @@ "plasmid_name": "pHAGE-BRAF-V600E", "sequence-type": "addgene-full", "addgene_id": "116204", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -19191,7 +20222,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CAMKK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158169", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -19257,7 +20287,10 @@ "plasmid_name": "pDEST-IRES-puro-polyA", "sequence-type": "depositor-full", "addgene_id": "43967", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "att_sites": [ "attB2", @@ -19322,7 +20355,10 @@ "plasmid_name": "pDONR221_RHAG", "sequence-type": "addgene-full", "addgene_id": "131871", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -19353,7 +20389,10 @@ "plasmid_name": "TFORF3208", "sequence-type": "addgene-full", "addgene_id": "144684", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -19413,7 +20452,10 @@ "plasmid_name": "pLX307_CdTag-HA_EmptyVector", "sequence-type": "addgene-full", "addgene_id": "221467", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attR1", @@ -19479,7 +20521,10 @@ "plasmid_name": "pDONR221-MFSD4B_STOP", "sequence-type": "addgene-full", "addgene_id": "161095", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -19510,7 +20555,10 @@ "plasmid_name": "TFORF3064", "sequence-type": "addgene-full", "addgene_id": "144540", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -19570,7 +20618,9 @@ "plasmid_name": "pDONR221-RPL30", "sequence-type": "addgene-full", "addgene_id": "166203", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -19601,7 +20651,10 @@ "plasmid_name": "pDONR221-SLC7A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161351", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161351.addgene-full.gb" }, @@ -19610,7 +20663,9 @@ "plasmid_name": "pME-lox-3xSTOP-lox (JDW 869)", "sequence-type": "addgene-full", "addgene_id": "224521", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -19650,7 +20705,10 @@ "plasmid_name": "pMMK ENTR 3", "sequence-type": "addgene-full", "addgene_id": "206262", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL4", @@ -19671,7 +20729,6 @@ "plasmid_name": "R777-E017 Hs.CCND1", "sequence-type": "depositor-full", "addgene_id": "70301", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -19700,7 +20757,10 @@ "plasmid_name": "pDONR223_ATPIF1_WT", "sequence-type": "addgene-full", "addgene_id": "81774", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -19712,7 +20772,10 @@ "plasmid_name": "KK802: pMVP (L5-L4) Zeo-P2A", "sequence-type": "addgene-full", "addgene_id": "121719", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -19746,7 +20809,10 @@ "plasmid_name": "pDONR223_FBXW7_p.A502V", "sequence-type": "addgene-full", "addgene_id": "81494", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -19778,7 +20844,10 @@ "plasmid_name": "pME-secAnxaV-NS", "sequence-type": "depositor-full", "addgene_id": "67718", - "references": [], + "references": [ + "https://doi.org/10.3389/fncel.2015.00321", + "https://www.ncbi.nlm.nih.gov/pubmed/26379496" + ], "kit": null, "att_sites": [ "attL1", @@ -19810,7 +20879,10 @@ "plasmid_name": "pDONR223_PWP1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82969", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -19839,7 +20911,10 @@ "plasmid_name": "pHAGE-CDKN2A-A68T", "sequence-type": "addgene-full", "addgene_id": "116220", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -19893,7 +20968,10 @@ "plasmid_name": "TFORF3438", "sequence-type": "addgene-full", "addgene_id": "144914", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -19953,7 +21031,10 @@ "plasmid_name": "pGWB444", "sequence-type": "depositor-full", "addgene_id": "74830", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -20006,7 +21087,10 @@ "plasmid_name": "pAG304GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14328", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -20064,7 +21148,9 @@ "plasmid_name": "pDONR221-HBE1", "sequence-type": "addgene-full", "addgene_id": "166178", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -20095,7 +21181,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-142", "sequence-type": "depositor-full", "addgene_id": "46678", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -20145,7 +21234,10 @@ "plasmid_name": "KZ201: pMVP (L3-L2) P2A-Hygro + polyA", "sequence-type": "addgene-full", "addgene_id": "121782", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -20181,7 +21273,10 @@ "plasmid_name": "KL001: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS-VPR", "sequence-type": "addgene-full", "addgene_id": "121836", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -20218,7 +21313,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SOX17", "sequence-type": "addgene-full", "addgene_id": "222925", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "att_sites": [ "attB1", @@ -20265,7 +21362,10 @@ "plasmid_name": "pHDT2:HDT2-GFP", "sequence-type": "addgene-full", "addgene_id": "108566", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "att_sites": [ "attB1", @@ -20308,7 +21408,9 @@ "plasmid_name": "pPB-cT3G-cERP2-DMRT1", "sequence-type": "addgene-full", "addgene_id": "222571", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -20354,7 +21456,10 @@ "plasmid_name": "pEBTetBl-CLIP-\u03b3-tubulin", "sequence-type": "addgene-full", "addgene_id": "136848", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -20399,7 +21504,10 @@ "plasmid_name": "pDONR223_DCAF8_p.G588C", "sequence-type": "addgene-full", "addgene_id": "82792", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -20428,7 +21536,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.I140T", "sequence-type": "addgene-full", "addgene_id": "82826", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -20458,7 +21569,10 @@ "plasmid_name": "pGWB405", "sequence-type": "depositor-full", "addgene_id": "74799", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -20511,7 +21625,10 @@ "plasmid_name": "pcDNA3_SP-DRD1-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194359", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -20568,7 +21685,10 @@ "plasmid_name": "pYPQ147", "sequence-type": "depositor-full", "addgene_id": "69299", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL2", @@ -20598,7 +21718,10 @@ "plasmid_name": "pLenti_EF1a_Flag_TP53_P278A", "sequence-type": "addgene-full", "addgene_id": "183113", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "att_sites": [ "attB1", @@ -20657,7 +21780,9 @@ "plasmid_name": "pMpGWB436", "sequence-type": "depositor-full", "addgene_id": "68701", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -20707,7 +21832,6 @@ "plasmid_name": "pDEST-Spe4-RfA-miRFP713-stop", "sequence-type": "addgene-full", "addgene_id": "186391", - "references": [], "kit": null, "file": "data/addgene_plasmids/186391.addgene-full.gb" }, @@ -20716,7 +21840,10 @@ "plasmid_name": "pQYD", "sequence-type": "depositor-full", "addgene_id": "48104", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.02296-13", + "https://www.ncbi.nlm.nih.gov/pubmed/23995928" + ], "kit": null, "att_sites": [ "attR1", @@ -20756,7 +21883,10 @@ "plasmid_name": "pAG423GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14366", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -20816,7 +21946,10 @@ "plasmid_name": "MTCH2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98354", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -20876,7 +22009,10 @@ "plasmid_name": "5'-3xFLAG Kdm1a+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212055", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -20916,7 +22052,10 @@ "plasmid_name": "pDONR221-SLC37A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161285", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -20947,7 +22086,10 @@ "plasmid_name": "TFORF3018", "sequence-type": "addgene-full", "addgene_id": "144494", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144494.addgene-full.gb" }, @@ -20956,7 +22098,10 @@ "plasmid_name": "pDONR223-ZNF670", "sequence-type": "addgene-full", "addgene_id": "88337", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -20985,7 +22130,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST CDC42EP1 WT", "sequence-type": "depositor-full", "addgene_id": "69819", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "att_sites": [ "attB1", @@ -21035,7 +22183,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf9c", "sequence-type": "addgene-full", "addgene_id": "158379", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -21080,7 +22231,6 @@ "plasmid_name": "pREP82xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79020", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -21125,7 +22275,10 @@ "plasmid_name": "actc1b-mKate2-rab5b", "sequence-type": "addgene-full", "addgene_id": "109650", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -21167,7 +22320,10 @@ "plasmid_name": "TFORF3298", "sequence-type": "addgene-full", "addgene_id": "144774", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -21227,7 +22383,10 @@ "plasmid_name": "pEN_TT BirA*", "sequence-type": "addgene-full", "addgene_id": "192309", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -21256,7 +22415,10 @@ "plasmid_name": "pDONR221_SLC25A32", "sequence-type": "addgene-full", "addgene_id": "131981", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -21287,7 +22449,6 @@ "plasmid_name": "R777-E344 Hs.TFDP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70628", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -21315,7 +22476,10 @@ "plasmid_name": "pDONR223_SV2C_p.M727I", "sequence-type": "addgene-full", "addgene_id": "81540", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -21347,7 +22511,10 @@ "plasmid_name": "pDONR221-SLC22A14_STOP", "sequence-type": "addgene-full", "addgene_id": "161165", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -21378,7 +22545,10 @@ "plasmid_name": "pCZGY2162", "sequence-type": "addgene-full", "addgene_id": "110136", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.08.002", + "https://www.ncbi.nlm.nih.gov/pubmed/25313960" + ], "kit": null, "att_sites": [ "attB1", @@ -21425,7 +22595,10 @@ "plasmid_name": "pDONR221-WT-short-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192100", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "att_sites": [ "attL1", @@ -21456,7 +22629,10 @@ "plasmid_name": "pDONR223_RAC1_WT", "sequence-type": "addgene-full", "addgene_id": "81749", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -21468,7 +22644,10 @@ "plasmid_name": "pFRT_TO_eGFP_ELAVL1", "sequence-type": "addgene-full", "addgene_id": "106105", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "att_sites": [ "attB1", @@ -21515,7 +22694,10 @@ "plasmid_name": "pFRT-TODestFLAGHAhFMRPiso1", "sequence-type": "addgene-full", "addgene_id": "48690", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11737", + "https://www.ncbi.nlm.nih.gov/pubmed/23235829" + ], "kit": null, "att_sites": [ "attB1", @@ -21560,7 +22742,9 @@ "plasmid_name": "nTALECD for_PKT3 exon12_1397NC", "sequence-type": "addgene-full", "addgene_id": "193379", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "att_sites": [ "attB1", @@ -21607,7 +22791,10 @@ "plasmid_name": "pDONR223_PSMG1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82954", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -21636,7 +22823,10 @@ "plasmid_name": "IO901: pMVP (L5-L4) BioID2", "sequence-type": "addgene-full", "addgene_id": "121724", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -21669,7 +22859,6 @@ "plasmid_name": "pLV-SspB-HaloTag-TRIO-DHPH1", "sequence-type": "addgene-full", "addgene_id": "176126", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -21731,7 +22920,10 @@ "plasmid_name": "pDONR221_CLN3", "sequence-type": "addgene-full", "addgene_id": "131868", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -21762,7 +22954,10 @@ "plasmid_name": "PRPF3", "sequence-type": "addgene-full", "addgene_id": "155848", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB2" @@ -21803,7 +22998,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CAMKV_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158170", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -21869,7 +23063,10 @@ "plasmid_name": "TFORF3453", "sequence-type": "addgene-full", "addgene_id": "144929", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -21929,7 +23126,10 @@ "plasmid_name": "pAC1810_pmax-FRB-RBM38", "sequence-type": "addgene-full", "addgene_id": "118643", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attB1", @@ -21962,7 +23162,10 @@ "plasmid_name": "TFORF3130", "sequence-type": "addgene-full", "addgene_id": "144606", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -22022,7 +23225,10 @@ "plasmid_name": "pGCS-C6(eGFP)", "sequence-type": "addgene-full", "addgene_id": "85729", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -22073,7 +23279,10 @@ "plasmid_name": "p3E-rab6bb", "sequence-type": "addgene-full", "addgene_id": "109722", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -22104,7 +23313,9 @@ "plasmid_name": "pDEST17-His10-ccdB", "sequence-type": "addgene-full", "addgene_id": "166145", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attR1", @@ -22144,7 +23355,10 @@ "plasmid_name": "pHAGE-EGFR-P699L", "sequence-type": "addgene-full", "addgene_id": "116286", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -22198,7 +23412,10 @@ "plasmid_name": "ATX3-13Q", "sequence-type": "addgene-full", "addgene_id": "184248", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "file": "data/addgene_plasmids/184248.addgene-full.gb" }, @@ -22207,7 +23424,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp3", "sequence-type": "depositor-full", "addgene_id": "168838", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -22236,7 +23456,10 @@ "plasmid_name": "pDONR223_IDH2_p.R172K", "sequence-type": "addgene-full", "addgene_id": "81432", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -22268,7 +23491,10 @@ "plasmid_name": "pDONR-IAA31_no stop", "sequence-type": "depositor-full", "addgene_id": "83865", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -22299,7 +23525,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-AKT1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189890", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -22366,7 +23591,10 @@ "plasmid_name": "p7129 pHAGE-P-CMVt-N-HA-GAW-HM13", "sequence-type": "addgene-full", "addgene_id": "100155", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -22418,7 +23646,10 @@ "plasmid_name": "pDONR223_SPATA8_WT", "sequence-type": "addgene-full", "addgene_id": "81866", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -22450,7 +23681,10 @@ "plasmid_name": "pENTR{FRT}", "sequence-type": "addgene-full", "addgene_id": "182163", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attL1", @@ -22482,7 +23716,10 @@ "plasmid_name": "pME-H2B-mCerulean3", "sequence-type": "depositor-full", "addgene_id": "75156", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -22517,7 +23754,10 @@ "plasmid_name": "pHAGE-BRAF-K483E", "sequence-type": "addgene-full", "addgene_id": "116166", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -22568,7 +23808,10 @@ "plasmid_name": "pDONR223-ZNF146", "sequence-type": "addgene-full", "addgene_id": "88245", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -22598,7 +23841,10 @@ "plasmid_name": "CSTF3", "sequence-type": "addgene-full", "addgene_id": "155487", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -22641,7 +23887,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep131", "sequence-type": "addgene-full", "addgene_id": "136875", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -22686,7 +23935,10 @@ "plasmid_name": "pDONR221_SLC29A1", "sequence-type": "addgene-full", "addgene_id": "131927", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -22717,7 +23969,6 @@ "plasmid_name": "plix403-V5-N-mEYFP", "sequence-type": "addgene-full", "addgene_id": "223955", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -22782,7 +24033,6 @@ "plasmid_name": "pLenti6.3/NS4A-2K-NS4B", "sequence-type": "addgene-full", "addgene_id": "120846", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -22841,7 +24091,10 @@ "plasmid_name": "pDONR221-SLC8B1_STOP", "sequence-type": "depositor-full", "addgene_id": "161364", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -22872,7 +24125,10 @@ "plasmid_name": "TFORF3390", "sequence-type": "addgene-full", "addgene_id": "144866", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -22932,7 +24188,10 @@ "plasmid_name": "pcDNA3_DRD2-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194364", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -22989,7 +24248,9 @@ "plasmid_name": "pLV-TET2Puro-gal4DBD-miniVPR-HA", "sequence-type": "addgene-full", "addgene_id": "207169", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "att_sites": [ "attB1", @@ -23044,7 +24305,10 @@ "plasmid_name": "pHAGE-ERBB2-T733I", "sequence-type": "addgene-full", "addgene_id": "116352", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -23098,7 +24362,6 @@ "plasmid_name": "R777-E247 Hs.RASGRP3", "sequence-type": "depositor-full", "addgene_id": "70531", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -23126,7 +24389,10 @@ "plasmid_name": "pAG305GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14282", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -23184,7 +24450,10 @@ "plasmid_name": "TFORF2956", "sequence-type": "addgene-full", "addgene_id": "144432", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144432.addgene-full.gb" }, @@ -23193,7 +24462,10 @@ "plasmid_name": "actc1b-mKate2-EHD2a", "sequence-type": "addgene-full", "addgene_id": "109516", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -23235,7 +24507,10 @@ "plasmid_name": "pDONR223_RASA1_p.L146S", "sequence-type": "addgene-full", "addgene_id": "81606", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23267,7 +24542,6 @@ "plasmid_name": "pDest-527", "sequence-type": "addgene-full", "addgene_id": "11518", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -23312,7 +24586,10 @@ "plasmid_name": "pDONR221-SLC39A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161223", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -23343,7 +24620,10 @@ "plasmid_name": "pDONR223_CBFB_WT", "sequence-type": "addgene-full", "addgene_id": "81929", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23375,7 +24655,10 @@ "plasmid_name": "5'-3xFLAG Msl1-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212068", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -23415,7 +24698,10 @@ "plasmid_name": "hSyn-GW-dCas9-SET2-R195G-C201A-IRES2-mCherry", "sequence-type": "addgene-full", "addgene_id": "202090", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2021.08.008", + "https://www.ncbi.nlm.nih.gov/pubmed/34480866" + ], "kit": null, "att_sites": [ "attB1", @@ -23454,7 +24740,10 @@ "plasmid_name": "TFORF3273", "sequence-type": "addgene-full", "addgene_id": "144749", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -23514,7 +24803,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF7B C-trunc", "sequence-type": "addgene-full", "addgene_id": "153957", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -23543,7 +24835,10 @@ "plasmid_name": "pSLIK BirA* 3xFLAG-CSE1L zeo", "sequence-type": "addgene-full", "addgene_id": "192334", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -23609,7 +24904,10 @@ "plasmid_name": "pENTR223-PARK7H126A", "sequence-type": "addgene-full", "addgene_id": "115180", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attL1", @@ -23638,7 +24936,10 @@ "plasmid_name": "pDONR223_EGFR_p.769_770insASV", "sequence-type": "addgene-full", "addgene_id": "82880", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -23668,7 +24969,10 @@ "plasmid_name": "pDONR221-ZNF516", "sequence-type": "depositor-full", "addgene_id": "101566", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -23700,7 +25004,10 @@ "plasmid_name": "pDONR223_SERPINB5_p.I159S", "sequence-type": "addgene-full", "addgene_id": "82734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23732,7 +25039,6 @@ "plasmid_name": "pUC-L3L2", "sequence-type": "addgene-full", "addgene_id": "114019", - "references": [], "kit": null, "att_sites": [ "attL2", @@ -23771,7 +25077,10 @@ "plasmid_name": "pDONR223_GPR141_p.Q224K", "sequence-type": "addgene-full", "addgene_id": "81357", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23803,7 +25112,10 @@ "plasmid_name": "pLentiPGK Hygro DEST H2B-mRuby2", "sequence-type": "addgene-full", "addgene_id": "90236", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "att_sites": [ "attB1", @@ -23864,7 +25176,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK40_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170613", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -23930,7 +25241,10 @@ "plasmid_name": "pcDNA5FRT/TO-DVC1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113481", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -23974,7 +25288,10 @@ "plasmid_name": "223 pCS EGFP DEST", "sequence-type": "depositor-full", "addgene_id": "13071", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -24023,7 +25340,10 @@ "plasmid_name": "pHAGE-PIK3R1-R348*", "sequence-type": "addgene-full", "addgene_id": "116603", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -24074,7 +25394,10 @@ "plasmid_name": "pcDNA3.1_nV5-AMOT (p130)", "sequence-type": "addgene-full", "addgene_id": "172997", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -24126,7 +25449,10 @@ "plasmid_name": "pMuLE ENTR CMV tdTomato L5-L2", "sequence-type": "depositor-full", "addgene_id": "62152", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -24163,7 +25489,10 @@ "plasmid_name": "pENTR223-BGLF1", "sequence-type": "addgene-full", "addgene_id": "195818", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -24194,7 +25523,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 632-639D", "sequence-type": "addgene-full", "addgene_id": "175771", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -24247,7 +25579,6 @@ "plasmid_name": "R777-E121 Hs.MAP2K1", "sequence-type": "depositor-full", "addgene_id": "70405", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -24275,7 +25606,10 @@ "plasmid_name": "pDONR221-SLC6A20_STOP", "sequence-type": "addgene-full", "addgene_id": "161409", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -24306,7 +25640,10 @@ "plasmid_name": "pcDNA3_ERBB2-V5", "sequence-type": "addgene-full", "addgene_id": "214612", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -24356,7 +25693,10 @@ "plasmid_name": "pCM5.35", "sequence-type": "depositor-full", "addgene_id": "19395", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19395.depositor-full.gb" }, @@ -24365,7 +25705,10 @@ "plasmid_name": "mpeg:lamp2-mCherry-stop; cmlc2:GFP", "sequence-type": "addgene-full", "addgene_id": "213740", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abp8321", + "https://www.ncbi.nlm.nih.gov/pubmed/36044568" + ], "kit": null, "att_sites": [ "attB1", @@ -24411,7 +25754,10 @@ "plasmid_name": "pHAGE-TGFB1-V367M", "sequence-type": "addgene-full", "addgene_id": "116698", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -24461,7 +25807,10 @@ "plasmid_name": "pDONR221_SLC35D3", "sequence-type": "addgene-full", "addgene_id": "132110", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -24492,7 +25841,10 @@ "plasmid_name": "pBullet-vac-c", "sequence-type": "depositor-full", "addgene_id": "53076", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -24529,7 +25881,10 @@ "plasmid_name": "pDONR223 LC3A G120", "sequence-type": "addgene-full", "addgene_id": "123071", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -24560,7 +25915,6 @@ "plasmid_name": "CTNNB1 - R673w in pENTR", "sequence-type": "addgene-full", "addgene_id": "216622", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -24590,7 +25944,10 @@ "plasmid_name": "pHAGE-PIK3CG-E347K", "sequence-type": "addgene-full", "addgene_id": "116578", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -24645,7 +26002,6 @@ "plasmid_name": "Hs.KRAS4b R73E", "sequence-type": "depositor-full", "addgene_id": "83162", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -24671,7 +26027,10 @@ "plasmid_name": "Phage-PGK-Flag-HA-FKBP-T(WT)", "sequence-type": "addgene-full", "addgene_id": "181734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xcrm.2020.100188", + "https://www.ncbi.nlm.nih.gov/pubmed/33521702" + ], "kit": null, "att_sites": [ "attB1", @@ -24722,7 +26081,10 @@ "plasmid_name": "pCFJ1820 - pDEST[2-3](5605)[Psmu-1 | smu-1 genomic | ccdB Cm]", "sequence-type": "addgene-full", "addgene_id": "159838", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -24757,7 +26119,10 @@ "plasmid_name": "tetO-GATA6", "sequence-type": "addgene-full", "addgene_id": "170688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -24820,7 +26185,10 @@ "plasmid_name": "p2R3z-BASI-ccdB-BSAI", "sequence-type": "addgene-full", "addgene_id": "118389", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "att_sites": [ "attL3", @@ -24856,7 +26224,10 @@ "plasmid_name": "pCMB-MTUBr", "sequence-type": "depositor-full", "addgene_id": "61197", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -24902,7 +26273,10 @@ "plasmid_name": "pLX304-FOS-V5", "sequence-type": "addgene-full", "addgene_id": "59140", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.06.004", + "https://www.ncbi.nlm.nih.gov/pubmed/24954536" + ], "kit": null, "att_sites": [ "attB1", @@ -24961,7 +26335,10 @@ "plasmid_name": "769 pME mCerulean-CAAX", "sequence-type": "addgene-full", "addgene_id": "195957", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL1", @@ -24996,7 +26373,9 @@ "plasmid_name": "pH4-DEST", "sequence-type": "addgene-full", "addgene_id": "90099", - "references": [], + "references": [ + "https://doi.org/10.7287/peerj.preprints.2907v1" + ], "kit": null, "att_sites": [ "attR1", @@ -25035,7 +26414,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-GFP (gRNA: Ascl1-3)", "sequence-type": "addgene-full", "addgene_id": "159658", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/159658.addgene-full.gb" }, @@ -25044,7 +26426,10 @@ "plasmid_name": "HJP-177-IVS-Syn21-gp41-1C-CreBC-WPREw", "sequence-type": "addgene-full", "addgene_id": "162474", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "att_sites": [ "attR1", @@ -25080,7 +26465,6 @@ "plasmid_name": "pHAGE-CMV-Flag-CDK13_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135276", - "references": [], "kit": null, "file": "data/addgene_plasmids/135276.addgene-full.gb" }, @@ -25089,7 +26473,10 @@ "plasmid_name": "pSC10", "sequence-type": "addgene-full", "addgene_id": "104784", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "att_sites": [ "attB2", @@ -25126,7 +26513,6 @@ "plasmid_name": "PB-TET-ZH-lox66FRT", "sequence-type": "addgene-full", "addgene_id": "139563", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -25186,7 +26572,10 @@ "plasmid_name": "pMx/ATP8A1(E191Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209252", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209252.addgene-full.gb" }, @@ -25195,7 +26584,10 @@ "plasmid_name": "pHAGE-MRPS31-R219C", "sequence-type": "addgene-full", "addgene_id": "116437", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -25250,7 +26642,10 @@ "plasmid_name": "MAC-IFITM1", "sequence-type": "addgene-full", "addgene_id": "172417", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -25295,7 +26690,10 @@ "plasmid_name": "pDONR223_REG1B_p.K157T", "sequence-type": "addgene-full", "addgene_id": "81283", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -25327,7 +26725,10 @@ "plasmid_name": "pTORKm43GWC", "sequence-type": "addgene-full", "addgene_id": "112898", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01516-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31575765" + ], "kit": null, "att_sites": [ "attR3", @@ -25375,7 +26776,6 @@ "plasmid_name": "pAG416GAL-2x-uA-ccdB-6stop", "sequence-type": "addgene-full", "addgene_id": "203517", - "references": [], "kit": null, "att_sites": [ "attR1" @@ -25427,7 +26827,10 @@ "plasmid_name": "MAC_N_CDK8", "sequence-type": "addgene-full", "addgene_id": "111685", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -25472,7 +26875,10 @@ "plasmid_name": "plenti6-SLC7A11/xCT-V5", "sequence-type": "addgene-full", "addgene_id": "170427", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M117.798405", + "https://www.ncbi.nlm.nih.gov/pubmed/28630042" + ], "kit": null, "att_sites": [ "attB1", @@ -25532,7 +26938,9 @@ "plasmid_name": "pMpGWB108", "sequence-type": "depositor-full", "addgene_id": "68562", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -25582,7 +26990,10 @@ "plasmid_name": "pDL106", "sequence-type": "addgene-full", "addgene_id": "175911", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -25606,7 +27017,10 @@ "plasmid_name": "Tol2-krt4-RFP-miR-223 sponge", "sequence-type": "addgene-full", "addgene_id": "97150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "file": "data/addgene_plasmids/97150.addgene-full.gb" }, @@ -25615,7 +27029,10 @@ "plasmid_name": "MEN2A-SHC", "sequence-type": "addgene-full", "addgene_id": "139618", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -25659,7 +27076,10 @@ "plasmid_name": "SLC19A1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176951", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -25711,7 +27131,10 @@ "plasmid_name": "MAC_C_ROR2", "sequence-type": "addgene-full", "addgene_id": "187759", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -25756,7 +27179,10 @@ "plasmid_name": "pDONR223_GLI1_WT", "sequence-type": "addgene-full", "addgene_id": "82123", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -25785,7 +27211,6 @@ "plasmid_name": "g4s pDONR", "sequence-type": "addgene-full", "addgene_id": "117447", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -25816,7 +27241,10 @@ "plasmid_name": "pLV-PLXNB2-decto", "sequence-type": "addgene-full", "addgene_id": "86238", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "att_sites": [ "attB1", @@ -25876,7 +27304,10 @@ "plasmid_name": "pEXPA10-NLS-3xmCitrine", "sequence-type": "addgene-full", "addgene_id": "192523", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.112676", + "https://www.ncbi.nlm.nih.gov/pubmed/37342910" + ], "kit": null, "att_sites": [ "attB1", @@ -25921,7 +27352,10 @@ "plasmid_name": "pDONR221-SFXN2", "sequence-type": "addgene-full", "addgene_id": "132256", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -25952,7 +27386,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-EBFP2", "sequence-type": "addgene-full", "addgene_id": "158553", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -26011,7 +27444,10 @@ "plasmid_name": "OLIG2_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53858", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "att_sites": [ "attB1", @@ -26050,7 +27486,10 @@ "plasmid_name": "pAG426GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14252", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -26109,7 +27548,10 @@ "plasmid_name": "pENTR223-BVLF1.5", "sequence-type": "addgene-full", "addgene_id": "195791", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -26138,7 +27580,10 @@ "plasmid_name": "C514-E10: attB5r-RU5u-HA-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162952", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -26168,7 +27613,10 @@ "plasmid_name": "pENTR-L5-ECFP-L2", "sequence-type": "depositor-full", "addgene_id": "32592", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL2", @@ -26203,7 +27651,9 @@ "plasmid_name": "pMpGWB307", "sequence-type": "depositor-full", "addgene_id": "68635", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -26253,7 +27703,10 @@ "plasmid_name": "mKate2-P2A-APEX2-TAPP1-PH", "sequence-type": "depositor-full", "addgene_id": "67662", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -26298,7 +27751,10 @@ "plasmid_name": "pENTR223-BXLF1", "sequence-type": "addgene-full", "addgene_id": "195825", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -26327,7 +27783,10 @@ "plasmid_name": "pDEST40-CES2C-\u0394C-S230A", "sequence-type": "addgene-full", "addgene_id": "200557", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2023.04.011", + "https://www.ncbi.nlm.nih.gov/pubmed/37141889" + ], "kit": null, "att_sites": [ "attB1", @@ -26379,7 +27838,9 @@ "plasmid_name": "pDRF'- AmTryoshka1;3-LS-F138I", "sequence-type": "addgene-full", "addgene_id": "100922", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "file": "data/addgene_plasmids/100922.addgene-full.gb" }, @@ -26388,7 +27849,10 @@ "plasmid_name": "pDONR223_MLST8_WT", "sequence-type": "addgene-full", "addgene_id": "82258", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -26417,7 +27881,10 @@ "plasmid_name": "pCFJ1655", "sequence-type": "depositor-full", "addgene_id": "51481", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attR3", @@ -26450,7 +27917,10 @@ "plasmid_name": "pRK5mycGW-Eps8L2_529-715", "sequence-type": "addgene-full", "addgene_id": "196543", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attB1", @@ -26503,7 +27973,10 @@ "plasmid_name": "pENTR_L1-BirA(R118G)-NES-YFP-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127357", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL1", @@ -26541,7 +28014,10 @@ "plasmid_name": "pDONR221-SFXN3_STOP", "sequence-type": "addgene-full", "addgene_id": "161434", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -26572,7 +28048,9 @@ "plasmid_name": "pFLIP38", "sequence-type": "depositor-full", "addgene_id": "65616", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -26610,7 +28088,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-7", "sequence-type": "depositor-full", "addgene_id": "46702", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -26660,7 +28141,10 @@ "plasmid_name": "pME-TurboID-NS", "sequence-type": "addgene-full", "addgene_id": "166566", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "att_sites": [ "attL1", @@ -26693,7 +28177,10 @@ "plasmid_name": "2PH-PLCd-APEX2-P2A-mKate2", "sequence-type": "depositor-full", "addgene_id": "71284", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -26738,7 +28225,10 @@ "plasmid_name": "Tol2-LyzC-Rac-DN(guide resistant)-2a-mcherry-U6ac-Rac guides", "sequence-type": "addgene-full", "addgene_id": "168243", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "file": "data/addgene_plasmids/168243.addgene-full.gb" }, @@ -26747,7 +28237,10 @@ "plasmid_name": "pDONR223-ZNF698", "sequence-type": "addgene-full", "addgene_id": "88666", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -26776,7 +28269,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS", "sequence-type": "addgene-full", "addgene_id": "158628", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attL1", @@ -26805,7 +28301,10 @@ "plasmid_name": "pHAGE-PIK3CA-V105_R108delVGNR", "sequence-type": "addgene-full", "addgene_id": "116545", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -26859,7 +28358,6 @@ "plasmid_name": "pAG416-GAL-TDP-43", "sequence-type": "addgene-full", "addgene_id": "181709", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -26912,7 +28410,6 @@ "plasmid_name": "pAG416GAL10-HPeV_3C", "sequence-type": "addgene-full", "addgene_id": "203465", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -26961,7 +28458,10 @@ "plasmid_name": "pCFJ1359 - Intron GG2 - smu-1", "sequence-type": "addgene-full", "addgene_id": "159805", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -26999,7 +28499,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS1", "sequence-type": "depositor-full", "addgene_id": "20238", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "att_sites": [ "attB1", @@ -27032,7 +28535,10 @@ "plasmid_name": "pBABEpuro-ERBB2 S310Y", "sequence-type": "addgene-full", "addgene_id": "40992", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1203201109", + "https://www.ncbi.nlm.nih.gov/pubmed/22908275" + ], "kit": null, "att_sites": [ "attB1", @@ -27064,7 +28570,10 @@ "plasmid_name": "pENTR D-TOPO-C3_28", "sequence-type": "depositor-full", "addgene_id": "60271", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -27095,7 +28604,10 @@ "plasmid_name": "pHAGE-PIK3CA", "sequence-type": "addgene-full", "addgene_id": "116771", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -27149,7 +28661,10 @@ "plasmid_name": "pAGW-dpse-GAL4-DBD", "sequence-type": "addgene-full", "addgene_id": "125153", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-019-1210-7", + "https://www.ncbi.nlm.nih.gov/pubmed/31092928" + ], "kit": null, "att_sites": [ "attR1", @@ -27182,7 +28697,10 @@ "plasmid_name": "pHAGE-PIK3CA-G1049R", "sequence-type": "addgene-full", "addgene_id": "116491", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -27237,7 +28755,10 @@ "plasmid_name": "pWZL Neo Myr Flag CDK7", "sequence-type": "addgene-full", "addgene_id": "20452", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -27278,7 +28799,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_K36E_R38A_E39A", "sequence-type": "depositor-full", "addgene_id": "65658", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65658.depositor-full.gb" }, @@ -27287,7 +28811,10 @@ "plasmid_name": "pDONR223_RAF1_WT", "sequence-type": "addgene-full", "addgene_id": "82317", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -27316,7 +28843,10 @@ "plasmid_name": "pYPQ239A (dFnCas12a)-TV", "sequence-type": "addgene-full", "addgene_id": "136379", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -27349,7 +28879,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab10", "sequence-type": "addgene-full", "addgene_id": "166429", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -27393,7 +28922,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL2 WT", "sequence-type": "addgene-full", "addgene_id": "123103", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -27437,7 +28969,10 @@ "plasmid_name": "pDONR221_SLC35E3", "sequence-type": "addgene-full", "addgene_id": "132062", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -27468,7 +29003,10 @@ "plasmid_name": "pZA9", "sequence-type": "addgene-full", "addgene_id": "158487", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -27497,7 +29035,10 @@ "plasmid_name": "GRB2-SHN", "sequence-type": "addgene-full", "addgene_id": "139625", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -27541,7 +29082,6 @@ "plasmid_name": "pDONR221-si:ch73-1a9.3", "sequence-type": "addgene-full", "addgene_id": "192717", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -27572,7 +29112,6 @@ "plasmid_name": "pCW57.1_TStrp_HA_Nt", "sequence-type": "addgene-full", "addgene_id": "194065", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -27631,7 +29170,10 @@ "plasmid_name": "p21-M694I-MEFV", "sequence-type": "addgene-full", "addgene_id": "134710", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "att_sites": [ "attB1", @@ -27688,7 +29230,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir16-1.1", "sequence-type": "depositor-full", "addgene_id": "46680", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -27738,7 +29283,10 @@ "plasmid_name": "pDONR221 CARD8 PAM L368G", "sequence-type": "addgene-full", "addgene_id": "169978", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -27769,7 +29317,10 @@ "plasmid_name": "YES1 Y537F", "sequence-type": "depositor-full", "addgene_id": "51299", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/23245941" + ], "kit": null, "att_sites": [ "attB1", @@ -27828,7 +29379,10 @@ "plasmid_name": "pDONR221-SLC12A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161122", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -27859,7 +29413,10 @@ "plasmid_name": "pDONR223_FBXW7_p.R505C", "sequence-type": "addgene-full", "addgene_id": "81507", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -27891,7 +29448,10 @@ "plasmid_name": "pCZGY546", "sequence-type": "addgene-full", "addgene_id": "90466", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attB1", @@ -27922,7 +29482,10 @@ "plasmid_name": "TFORF3257", "sequence-type": "addgene-full", "addgene_id": "144733", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -27982,7 +29545,10 @@ "plasmid_name": "actc1b-mKate2-rab27a", "sequence-type": "addgene-full", "addgene_id": "109617", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -28024,7 +29590,10 @@ "plasmid_name": "pcDNA3_attR1-ORF-attR2-NTEV-TCS-GV-2xHA_DEST", "sequence-type": "addgene-full", "addgene_id": "194385", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attR1", @@ -28086,7 +29655,10 @@ "plasmid_name": "TFORF3411", "sequence-type": "addgene-full", "addgene_id": "144887", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -28146,7 +29718,10 @@ "plasmid_name": "pQLinkHD_mTFP1-mVenus", "sequence-type": "addgene-full", "addgene_id": "118859", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "att_sites": [ "attB1", @@ -28187,7 +29762,10 @@ "plasmid_name": "pHAGE-ERBB2-D769N", "sequence-type": "addgene-full", "addgene_id": "116328", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -28241,7 +29819,10 @@ "plasmid_name": "pDONR223_TPK1_p.T205S", "sequence-type": "addgene-full", "addgene_id": "82861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -28270,7 +29851,6 @@ "plasmid_name": "pCLXEBR-pTF-kRasV12", "sequence-type": "addgene-full", "addgene_id": "114318", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -28324,7 +29904,10 @@ "plasmid_name": "pMuLE ENTR SV40-hCas9 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62134", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -28361,7 +29944,6 @@ "plasmid_name": "R777-E179 Hs.PIK3R5", "sequence-type": "depositor-full", "addgene_id": "70463", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -28389,7 +29971,10 @@ "plasmid_name": "pDONR221-SLC39A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161259", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -28420,7 +30005,10 @@ "plasmid_name": "5'-BirA-FLAG Kdm1a+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212089", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -28461,7 +30049,10 @@ "plasmid_name": "TFORF2972", "sequence-type": "addgene-full", "addgene_id": "144448", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144448.addgene-full.gb" }, @@ -28470,7 +30061,10 @@ "plasmid_name": "LB701: pMVP/PB/mCherry-DEST", "sequence-type": "addgene-full", "addgene_id": "121871", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -28514,7 +30108,10 @@ "plasmid_name": "pDONR223_EYS_p.Q172L", "sequence-type": "addgene-full", "addgene_id": "81448", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -28546,7 +30143,10 @@ "plasmid_name": "pDONR221_SLC1A3", "sequence-type": "addgene-full", "addgene_id": "131889", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -28577,7 +30177,10 @@ "plasmid_name": "pAC1806_pmax-FKBP-dCasRx", "sequence-type": "addgene-full", "addgene_id": "118639", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attB1", @@ -28612,7 +30215,10 @@ "plasmid_name": "p3E-Rab38c", "sequence-type": "addgene-full", "addgene_id": "109758", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -28643,7 +30249,10 @@ "plasmid_name": "pSM2", "sequence-type": "addgene-full", "addgene_id": "85753", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mimet.2016.12.017", + "https://www.ncbi.nlm.nih.gov/pubmed/28017692" + ], "kit": null, "att_sites": [ "attP1", @@ -28680,7 +30289,6 @@ "plasmid_name": "p667-UBC-HIPK3-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158191", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -28745,7 +30353,10 @@ "plasmid_name": "pAG306GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14163", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -28804,7 +30415,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP7_nostop", "sequence-type": "addgene-full", "addgene_id": "149310", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -28833,7 +30447,10 @@ "plasmid_name": "pOPTXLUC", "sequence-type": "depositor-full", "addgene_id": "68504", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-13-97", + "https://www.ncbi.nlm.nih.gov/pubmed/24206622" + ], "kit": null, "file": "data/addgene_plasmids/68504.depositor-full.gb" }, @@ -28842,7 +30459,10 @@ "plasmid_name": "pAAV2-SynTetOff-GFP", "sequence-type": "addgene-full", "addgene_id": "190231", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "att_sites": [ "attB1", @@ -28884,7 +30504,10 @@ "plasmid_name": "pCZGY2845", "sequence-type": "addgene-full", "addgene_id": "87763", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attB1", @@ -28925,7 +30548,10 @@ "plasmid_name": "pInducer20-iCreb5(T59/T61D)(HA)", "sequence-type": "addgene-full", "addgene_id": "195028", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "att_sites": [ "attB1", @@ -28977,7 +30603,10 @@ "plasmid_name": "pAG306GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14404", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -29035,7 +30664,10 @@ "plasmid_name": "pDONR223_EGFR_p.A289V", "sequence-type": "addgene-full", "addgene_id": "81733", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29068,7 +30700,10 @@ "plasmid_name": "pJOG130", "sequence-type": "addgene-full", "addgene_id": "105336", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -29108,7 +30743,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189871", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -29174,7 +30808,10 @@ "plasmid_name": "pDONR221-SLC2A13_STOP", "sequence-type": "addgene-full", "addgene_id": "161316", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -29205,7 +30842,10 @@ "plasmid_name": "A1-LCD Perfect Mix", "sequence-type": "addgene-full", "addgene_id": "169718", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "att_sites": [ "attB1", @@ -29240,7 +30880,10 @@ "plasmid_name": "pDONR223_SMR3A_WT", "sequence-type": "addgene-full", "addgene_id": "81887", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29272,7 +30915,10 @@ "plasmid_name": "p{3P3-mTurquoise::KD,attB}", "sequence-type": "addgene-full", "addgene_id": "182182", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -29313,7 +30959,10 @@ "plasmid_name": "A1-LCD+7K+12D", "sequence-type": "addgene-full", "addgene_id": "178679", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -29348,7 +30997,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp7", "sequence-type": "addgene-full", "addgene_id": "168935", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -29377,7 +31029,10 @@ "plasmid_name": "pHAGE-BRAF-N581K", "sequence-type": "addgene-full", "addgene_id": "116187", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -29432,7 +31087,10 @@ "plasmid_name": "CNOT2", "sequence-type": "addgene-full", "addgene_id": "155466", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -29475,7 +31133,10 @@ "plasmid_name": "TFORF3031", "sequence-type": "addgene-full", "addgene_id": "144507", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -29535,7 +31196,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP16_stop", "sequence-type": "addgene-full", "addgene_id": "168681", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -29564,7 +31228,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 E_stop", "sequence-type": "addgene-full", "addgene_id": "168561", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -29593,7 +31260,6 @@ "plasmid_name": "His SUMO TEV E78K SPOP 1-374", "sequence-type": "addgene-full", "addgene_id": "197018", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -29633,7 +31299,10 @@ "plasmid_name": "pHAGE-EGFR-L747_A750delinsP", "sequence-type": "addgene-full", "addgene_id": "116267", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -29687,7 +31356,10 @@ "plasmid_name": "TFORF3477", "sequence-type": "addgene-full", "addgene_id": "144953", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -29747,7 +31419,10 @@ "plasmid_name": "pDONR223-ZNF607", "sequence-type": "addgene-full", "addgene_id": "88144", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -29776,7 +31451,10 @@ "plasmid_name": "R620-M13-303: CMV51p> SARS-CoV-2 S(1-1213)-2P-T4f-His6 B.1.1.7", "sequence-type": "addgene-full", "addgene_id": "170197", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -29831,7 +31509,6 @@ "plasmid_name": "pDONR221-K202R-long-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192093", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -29862,7 +31539,10 @@ "plasmid_name": "MAC_C_VPS26C", "sequence-type": "addgene-full", "addgene_id": "209690", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -29907,7 +31587,10 @@ "plasmid_name": "pDEST-Spe3-RfA", "sequence-type": "addgene-full", "addgene_id": "186370", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -29951,7 +31634,10 @@ "plasmid_name": "TFORF3507", "sequence-type": "depositor-full", "addgene_id": "144983", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -30011,7 +31697,10 @@ "plasmid_name": "pEX-CMV-SP-STIM2(15-746)", "sequence-type": "depositor-full", "addgene_id": "18868", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "att_sites": [ "attB2" @@ -30047,7 +31736,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF3A", "sequence-type": "addgene-full", "addgene_id": "154416", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -30077,7 +31769,10 @@ "plasmid_name": "pDONR223_ATF2_p.A481V", "sequence-type": "addgene-full", "addgene_id": "82773", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -30106,7 +31801,10 @@ "plasmid_name": "pIF3", "sequence-type": "addgene-full", "addgene_id": "196068", - "references": [], + "references": [ + "https://doi.org/10.1128/msphere.00594-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36655998" + ], "kit": null, "att_sites": [ "attB1", @@ -30152,7 +31850,10 @@ "plasmid_name": "MLKS2delKASHexp", "sequence-type": "addgene-full", "addgene_id": "130862", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "att_sites": [ "attB1", @@ -30188,7 +31889,10 @@ "plasmid_name": "pHAGE-EGFR-V765G", "sequence-type": "addgene-full", "addgene_id": "116315", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -30242,7 +31946,10 @@ "plasmid_name": "pDONR221_SLC17A7", "sequence-type": "addgene-full", "addgene_id": "131960", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -30273,7 +31980,10 @@ "plasmid_name": "TFORF3319", "sequence-type": "addgene-full", "addgene_id": "144795", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -30333,7 +32043,10 @@ "plasmid_name": "pPB-EF1a-MegaGate-DD-Hygro", "sequence-type": "addgene-full", "addgene_id": "175267", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -30382,7 +32095,10 @@ "plasmid_name": "pEBTetD-\u03b2-tubulin_SNAP", "sequence-type": "addgene-full", "addgene_id": "136832", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -30427,7 +32143,10 @@ "plasmid_name": "pDONR223 SCAF4_CRISPR resistant", "sequence-type": "addgene-full", "addgene_id": "122465", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "att_sites": [ "attL1", @@ -30456,7 +32175,10 @@ "plasmid_name": "pDONR221-SLC25A42_STOP", "sequence-type": "addgene-full", "addgene_id": "161184", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -30488,7 +32210,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hADAM10(aa551-654)", "sequence-type": "addgene-full", "addgene_id": "189557", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -30555,7 +32276,10 @@ "plasmid_name": "pEBTet-SNAP-POC5", "sequence-type": "addgene-full", "addgene_id": "136786", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -30601,7 +32325,10 @@ "plasmid_name": "pDONR221-UNC93A_STOP", "sequence-type": "depositor-full", "addgene_id": "161448", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -30633,7 +32360,10 @@ "plasmid_name": "pLgw V5-EcoDam", "sequence-type": "depositor-full", "addgene_id": "59210", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "att_sites": [ "attB1", @@ -30686,7 +32416,10 @@ "plasmid_name": "pDONR221-SLC35E1_STOP", "sequence-type": "addgene-full", "addgene_id": "161264", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -30717,7 +32450,6 @@ "plasmid_name": "p667-UBC-MAP3K14-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189903", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -30783,7 +32515,9 @@ "plasmid_name": "pMpGWB325", "sequence-type": "depositor-full", "addgene_id": "68653", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -30831,7 +32565,10 @@ "plasmid_name": "pDONR223_SPOP_p.K101I", "sequence-type": "addgene-full", "addgene_id": "81641", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -30863,7 +32600,10 @@ "plasmid_name": "p3E-jph1a", "sequence-type": "addgene-full", "addgene_id": "109551", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -30894,7 +32634,10 @@ "plasmid_name": "DDX27-1", "sequence-type": "addgene-full", "addgene_id": "155514", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -30937,7 +32680,10 @@ "plasmid_name": "Ad-FOXO1 1-280", "sequence-type": "addgene-full", "addgene_id": "131534", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "att_sites": [ "attB1", @@ -30974,7 +32720,6 @@ "plasmid_name": "R777-E303 Hs.SAV1", "sequence-type": "depositor-full", "addgene_id": "70587", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -31002,7 +32747,10 @@ "plasmid_name": "pGMCSq17-10M-0X", "sequence-type": "depositor-full", "addgene_id": "27364", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "att_sites": [ "attB1", @@ -31037,7 +32785,10 @@ "plasmid_name": "pAG305GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14234", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -31092,7 +32843,10 @@ "plasmid_name": "pENTR-R4R3-2xmRuby-N", "sequence-type": "depositor-full", "addgene_id": "113753", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -31127,7 +32881,10 @@ "plasmid_name": "pDONR223_GALNT14_p.A187T", "sequence-type": "addgene-full", "addgene_id": "81475", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -31159,7 +32916,10 @@ "plasmid_name": "pDONR221-SLC11A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161050", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -31190,7 +32950,10 @@ "plasmid_name": "pDONR223_RALA_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82988", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -31219,7 +32982,10 @@ "plasmid_name": "actc1b-mKate2-Rab38b", "sequence-type": "addgene-full", "addgene_id": "109765", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -31261,7 +33027,10 @@ "plasmid_name": "TFORF3165", "sequence-type": "addgene-full", "addgene_id": "144641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -31321,7 +33090,6 @@ "plasmid_name": "60-p3E_INTRON-EmptyRNAi", "sequence-type": "addgene-full", "addgene_id": "163380", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -31357,7 +33125,10 @@ "plasmid_name": "pMOS023: Peredox NADH/NAD+ sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163060", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -31420,7 +33191,10 @@ "plasmid_name": "pMpGE010", "sequence-type": "depositor-full", "addgene_id": "71536", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0205117", + "https://www.ncbi.nlm.nih.gov/pubmed/30379827" + ], "kit": null, "att_sites": [ "attB1", @@ -31472,7 +33246,10 @@ "plasmid_name": "pHAGE-AXL-R506H", "sequence-type": "addgene-full", "addgene_id": "116121", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -31521,7 +33298,10 @@ "plasmid_name": "pDEST-mCherry-GJA1-20k-N1", "sequence-type": "addgene-full", "addgene_id": "49861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2013.10.009", + "https://www.ncbi.nlm.nih.gov/pubmed/24210816" + ], "kit": null, "att_sites": [ "attB1", @@ -31562,7 +33342,10 @@ "plasmid_name": "pDONR223_FBXW7_WT", "sequence-type": "addgene-full", "addgene_id": "81795", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -31574,7 +33357,10 @@ "plasmid_name": "pKRG3-mU6-PUb-hSpCas9", "sequence-type": "addgene-full", "addgene_id": "162162", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-80436-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33436886" + ], "kit": null, "att_sites": [ "attB2" @@ -31601,7 +33387,10 @@ "plasmid_name": "pAAV_18xTEAD_luc2", "sequence-type": "addgene-full", "addgene_id": "173003", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/173003.addgene-full.gb" }, @@ -31610,7 +33399,6 @@ "plasmid_name": "Human-Dysferlin-v1", "sequence-type": "depositor-full", "addgene_id": "60217", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -31642,7 +33430,9 @@ "plasmid_name": "pDONR221-PRPF39(1of2)", "sequence-type": "addgene-full", "addgene_id": "166199", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -31673,7 +33463,10 @@ "plasmid_name": "pDEST51-LRRK2-WT", "sequence-type": "addgene-full", "addgene_id": "25080", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M708718200", + "https://www.ncbi.nlm.nih.gov/pubmed/18397888" + ], "kit": null, "att_sites": [ "attB1", @@ -31723,7 +33516,10 @@ "plasmid_name": "pID2.02", "sequence-type": "depositor-full", "addgene_id": "26955", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2008.07.008", + "https://www.ncbi.nlm.nih.gov/pubmed/18692039" + ], "kit": null, "att_sites": [ "attR1", @@ -31766,7 +33562,10 @@ "plasmid_name": "LC402: pMVP (L3-L2) eGFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121763", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -31803,7 +33602,10 @@ "plasmid_name": "p3E_BAG3P209L-eGFP", "sequence-type": "addgene-full", "addgene_id": "98181", - "references": [], + "references": [ + "https://doi.org/10.1007/s00401-014-1344-5", + "https://www.ncbi.nlm.nih.gov/pubmed/25273835" + ], "kit": null, "att_sites": [ "attL3", @@ -31839,7 +33641,10 @@ "plasmid_name": "sox10:PDGFRA wild-type", "sequence-type": "depositor-full", "addgene_id": "98696", - "references": [], + "references": [ + "https://doi.org/10.1038/onc.2016.269", + "https://www.ncbi.nlm.nih.gov/pubmed/27477693" + ], "kit": null, "att_sites": [ "attB1", @@ -31880,7 +33685,10 @@ "plasmid_name": "pENTR223-BOLF1", "sequence-type": "addgene-full", "addgene_id": "198579", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -31909,7 +33717,10 @@ "plasmid_name": "pDONR223_ARAF_p.S214F_p.D429A", "sequence-type": "addgene-full", "addgene_id": "82913", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -31938,7 +33749,10 @@ "plasmid_name": "pCS2+ Integrin beta 1b-mKate", "sequence-type": "addgene-full", "addgene_id": "105975", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.22689", + "https://www.ncbi.nlm.nih.gov/pubmed/28372636" + ], "kit": null, "att_sites": [ "attB1", @@ -31980,7 +33794,10 @@ "plasmid_name": "R713-M48-303: CMV51p> Halotag-Kras4aHVR", "sequence-type": "addgene-full", "addgene_id": "159684", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "att_sites": [ "attB1", @@ -32038,7 +33855,10 @@ "plasmid_name": "pWZL Neo Myr Flag AXL", "sequence-type": "addgene-full", "addgene_id": "20428", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -32079,7 +33899,6 @@ "plasmid_name": "pAV hH1-ARRET", "sequence-type": "depositor-full", "addgene_id": "111374", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -32108,7 +33927,10 @@ "plasmid_name": "pHAGE-PIK3CA-E365K", "sequence-type": "addgene-full", "addgene_id": "116470", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116470.addgene-full.gb" }, @@ -32117,7 +33939,9 @@ "plasmid_name": "p5E-mnx1", "sequence-type": "depositor-full", "addgene_id": "82402", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL4", @@ -32148,7 +33972,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF3B", "sequence-type": "addgene-full", "addgene_id": "141272", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -32177,7 +34004,10 @@ "plasmid_name": "pDONR221_SLC25A42", "sequence-type": "addgene-full", "addgene_id": "132018", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -32209,7 +34039,10 @@ "plasmid_name": "pBoPyV2b-S24", "sequence-type": "depositor-full", "addgene_id": "62357", - "references": [], + "references": [ + "https://doi.org/10.1099/vir.0.000033", + "https://www.ncbi.nlm.nih.gov/pubmed/25568187" + ], "kit": null, "att_sites": [ "attL1", @@ -32234,7 +34067,10 @@ "plasmid_name": "pCZGY 1703 tomm-20N::miniSOG(426Cys) in pENTR[1-2]", "sequence-type": "depositor-full", "addgene_id": "66781", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1204096109", + "https://www.ncbi.nlm.nih.gov/pubmed/22532663" + ], "kit": null, "att_sites": [ "attL1", @@ -32265,7 +34101,10 @@ "plasmid_name": "pHAGE-SIRPB1", "sequence-type": "addgene-full", "addgene_id": "116790", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -32315,7 +34154,10 @@ "plasmid_name": "pHAGE-IKBKB__ANK1", "sequence-type": "addgene-full", "addgene_id": "116824", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -32366,7 +34208,6 @@ "plasmid_name": "R777-E316 Hs.SHOC2-nostop", "sequence-type": "depositor-full", "addgene_id": "70600", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -32394,7 +34235,10 @@ "plasmid_name": "R701-X56-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) G13D", "sequence-type": "addgene-full", "addgene_id": "159564", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -32441,7 +34285,10 @@ "plasmid_name": "pYPQ265E1", "sequence-type": "addgene-full", "addgene_id": "164718", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -32477,7 +34324,6 @@ "plasmid_name": "pKPY738", "sequence-type": "depositor-full", "addgene_id": "72674", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -32508,7 +34354,10 @@ "plasmid_name": "MAC_C_AIFM1", "sequence-type": "addgene-full", "addgene_id": "111659", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -32553,7 +34402,6 @@ "plasmid_name": "R777-E083 Hs.FGFR1", "sequence-type": "depositor-full", "addgene_id": "70367", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -32582,7 +34430,10 @@ "plasmid_name": "pDONR221_SLC38A10", "sequence-type": "addgene-full", "addgene_id": "132083", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132083.addgene-full.gb" }, @@ -32591,7 +34442,10 @@ "plasmid_name": "pSGE_662_S2-1-Tor_dCP", "sequence-type": "depositor-full", "addgene_id": "71165", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -32624,7 +34478,6 @@ "plasmid_name": "pLEX307-CTSL-puro", "sequence-type": "addgene-full", "addgene_id": "158466", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -32684,7 +34537,10 @@ "plasmid_name": "pENTR L3-eGFP-Myc-L2", "sequence-type": "depositor-full", "addgene_id": "32314", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attL2", @@ -32719,7 +34575,10 @@ "plasmid_name": "pCAG/ATP10A-HA", "sequence-type": "addgene-full", "addgene_id": "209215", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -32763,7 +34622,10 @@ "plasmid_name": "pGWB514", "sequence-type": "depositor-full", "addgene_id": "74856", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -32811,7 +34673,6 @@ "plasmid_name": "pENTR-L4R1-PGK", "sequence-type": "addgene-full", "addgene_id": "139524", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -32846,7 +34707,10 @@ "plasmid_name": "PB-TAG-ERN", "sequence-type": "depositor-full", "addgene_id": "80476", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "att_sites": [ "attR1", @@ -32911,7 +34775,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK11A_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214461", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -32977,7 +34840,10 @@ "plasmid_name": "pDONR221_SLC51B", "sequence-type": "addgene-full", "addgene_id": "132157", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -33008,7 +34874,6 @@ "plasmid_name": "EEF1A2 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216585", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -33037,7 +34902,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(TM)-IRES-neo", "sequence-type": "addgene-full", "addgene_id": "128671", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -33087,7 +34955,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-WT-neo", "sequence-type": "addgene-full", "addgene_id": "156177", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156177.addgene-full.gb" }, @@ -33096,7 +34967,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0525-luc2", "sequence-type": "addgene-full", "addgene_id": "214655", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214655.addgene-full.gb" }, @@ -33105,7 +34979,10 @@ "plasmid_name": "pDONR223_PIK3CD_WT", "sequence-type": "addgene-full", "addgene_id": "82222", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -33134,7 +35011,10 @@ "plasmid_name": "pDEST15-Eps8L2_494-546", "sequence-type": "addgene-full", "addgene_id": "196539", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attB1", @@ -33168,7 +35048,10 @@ "plasmid_name": "pENTR223-BNLF2b", "sequence-type": "addgene-full", "addgene_id": "195770", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -33197,7 +35080,10 @@ "plasmid_name": "pFRT-TODestGFP_RBPMS", "sequence-type": "depositor-full", "addgene_id": "65744", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.045005.114", + "https://www.ncbi.nlm.nih.gov/pubmed/24860013" + ], "kit": null, "att_sites": [ "attB1", @@ -33213,7 +35099,10 @@ "plasmid_name": "Flag-HA-PSMD14", "sequence-type": "addgene-full", "addgene_id": "22557", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -33258,7 +35147,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-lsy-6", "sequence-type": "depositor-full", "addgene_id": "46650", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -33308,7 +35200,10 @@ "plasmid_name": "pAG415GAL-ccdB-EYFP", "sequence-type": "addgene-full", "addgene_id": "14217", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -33372,7 +35267,10 @@ "plasmid_name": "pDest_U6_A2_CG2_erbb2_gRNA171", "sequence-type": "addgene-full", "addgene_id": "199385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "att_sites": [ "attR3", @@ -33416,7 +35314,6 @@ "plasmid_name": "R777-E045 Hs.E2F1", "sequence-type": "depositor-full", "addgene_id": "70329", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -33444,7 +35341,10 @@ "plasmid_name": "pDEST-EGFP-MACROD1", "sequence-type": "addgene-full", "addgene_id": "172584", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attB1", @@ -33486,7 +35386,10 @@ "plasmid_name": "pPV-TetO-SpCas9-GR-iC-ERiH (CRONUS-Hygro)", "sequence-type": "addgene-full", "addgene_id": "100597", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-017-18568-4", + "https://www.ncbi.nlm.nih.gov/pubmed/29321585" + ], "kit": null, "att_sites": [ "attB1", @@ -33531,7 +35434,10 @@ "plasmid_name": "pINDUCER20_mStrawberry_Atg4BC74A", "sequence-type": "addgene-full", "addgene_id": "161735", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2229-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32376951" + ], "kit": null, "att_sites": [ "attB1", @@ -33586,7 +35492,10 @@ "plasmid_name": "pDONR223_PPIAL4G_p.N35H", "sequence-type": "addgene-full", "addgene_id": "81310", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -33618,7 +35527,6 @@ "plasmid_name": "pDest-795", "sequence-type": "addgene-full", "addgene_id": "161881", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -33662,7 +35570,10 @@ "plasmid_name": "pAG426GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14300", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -33724,7 +35635,10 @@ "plasmid_name": "punc503GFP", "sequence-type": "depositor-full", "addgene_id": "64021", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22385", + "https://www.ncbi.nlm.nih.gov/pubmed/23444339" + ], "kit": null, "att_sites": [ "attB1", @@ -33766,7 +35680,10 @@ "plasmid_name": "C413-E40: attB4-EFSp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162928", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -33795,7 +35712,10 @@ "plasmid_name": "pGWB424", "sequence-type": "depositor-full", "addgene_id": "74818", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -33847,7 +35767,10 @@ "plasmid_name": "pDL4", "sequence-type": "addgene-full", "addgene_id": "175882", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -33878,7 +35801,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6AP III (C41A, C46A, C840A)", "sequence-type": "addgene-full", "addgene_id": "119318", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -33930,7 +35856,10 @@ "plasmid_name": "pENTR-L3-Csy4-Cas9n-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141046", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -33964,7 +35893,10 @@ "plasmid_name": "pDONR223-ZNF98", "sequence-type": "addgene-full", "addgene_id": "88567", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -33993,7 +35925,10 @@ "plasmid_name": "pHAGE-PTPN11-N308D", "sequence-type": "addgene-full", "addgene_id": "116644", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -34047,7 +35982,10 @@ "plasmid_name": "pMXs-Atoh1", "sequence-type": "addgene-full", "addgene_id": "158529", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.55249", + "https://www.ncbi.nlm.nih.gov/pubmed/32602462" + ], "kit": null, "att_sites": [ "attB1", @@ -34078,7 +36016,6 @@ "plasmid_name": "pCDNA3-hTICAM1-VenusFlag", "sequence-type": "addgene-full", "addgene_id": "197632", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -34133,7 +36070,6 @@ "plasmid_name": "pTwist-ENTR-NP_001373296.1", "sequence-type": "addgene-full", "addgene_id": "192750", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -34163,7 +36099,10 @@ "plasmid_name": "HA-GFP1-10-pDEST-N", "sequence-type": "addgene-full", "addgene_id": "118368", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attR1", @@ -34211,7 +36150,10 @@ "plasmid_name": "pCPP5912", "sequence-type": "addgene-full", "addgene_id": "128703", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000388", + "https://www.ncbi.nlm.nih.gov/pubmed/19381254" + ], "kit": null, "att_sites": [ "attL1", @@ -34242,7 +36184,10 @@ "plasmid_name": "pDONR221_SLC23A2", "sequence-type": "addgene-full", "addgene_id": "132025", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -34273,7 +36218,10 @@ "plasmid_name": "R989-X32-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) Q61R", "sequence-type": "addgene-full", "addgene_id": "159559", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -34314,7 +36262,10 @@ "plasmid_name": "MAC_C_COX41", "sequence-type": "addgene-full", "addgene_id": "111664", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -34359,7 +36310,10 @@ "plasmid_name": "pDONR-A-HYG", "sequence-type": "depositor-full", "addgene_id": "29635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.fgb.2007.11.001", + "https://www.ncbi.nlm.nih.gov/pubmed/18248826" + ], "kit": null, "file": "data/addgene_plasmids/29635.depositor-full.gb" }, @@ -34368,7 +36322,10 @@ "plasmid_name": "D. vulgaris Cas5c/pHMGWA", "sequence-type": "addgene-full", "addgene_id": "81182", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2016.07.027", + "https://www.ncbi.nlm.nih.gov/pubmed/27588603" + ], "kit": null, "att_sites": [ "attB1", @@ -34411,7 +36368,10 @@ "plasmid_name": "pHAGE-ERBB4", "sequence-type": "addgene-full", "addgene_id": "116736", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -34465,7 +36425,10 @@ "plasmid_name": "pAD-CMV-STAT5A-DN-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83252", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "att_sites": [ "attB1", @@ -34507,7 +36470,6 @@ "plasmid_name": "pDEST-EB-R4R3", "sequence-type": "addgene-full", "addgene_id": "139519", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -34539,7 +36501,10 @@ "plasmid_name": "pMx/ATP8B3-HA", "sequence-type": "addgene-full", "addgene_id": "209228", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209228.addgene-full.gb" }, @@ -34548,7 +36513,10 @@ "plasmid_name": "Six5 pGWB402", "sequence-type": "addgene-full", "addgene_id": "118013", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.3114", + "https://www.ncbi.nlm.nih.gov/pubmed/29481865" + ], "kit": null, "att_sites": [ "attB1", @@ -34592,7 +36560,10 @@ "plasmid_name": "pDEST-mCherry-ARHGEF2", "sequence-type": "addgene-full", "addgene_id": "207959", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2304288120", + "https://www.ncbi.nlm.nih.gov/pubmed/37844244" + ], "kit": null, "att_sites": [ "attB1", @@ -34638,7 +36609,10 @@ "plasmid_name": "PL-5LTR-GW-A", "sequence-type": "addgene-full", "addgene_id": "138480", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-14957-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32170079" + ], "kit": null, "att_sites": [ "attR1", @@ -34683,7 +36657,10 @@ "plasmid_name": "pDONR223_SPANXN4_p.P4Q", "sequence-type": "addgene-full", "addgene_id": "81262", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -34715,7 +36692,6 @@ "plasmid_name": "IDG_KCNAB2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161647", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -34774,7 +36750,6 @@ "plasmid_name": "R777-E235 Hs.RASAL2", "sequence-type": "depositor-full", "addgene_id": "70519", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -34802,7 +36777,10 @@ "plasmid_name": "hu-TLR4 399 SNP flag pLenti4/To/v5/DEST", "sequence-type": "addgene-full", "addgene_id": "42651", - "references": [], + "references": [ + "https://doi.org/10.1002/hep.22697", + "https://www.ncbi.nlm.nih.gov/pubmed/19085953" + ], "kit": null, "att_sites": [ "attB1", @@ -34859,7 +36837,10 @@ "plasmid_name": "SMARCA2-GFP", "sequence-type": "addgene-full", "addgene_id": "65390", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -34910,7 +36891,10 @@ "plasmid_name": "pDONR221 Nop16", "sequence-type": "depositor-full", "addgene_id": "63765", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -34941,7 +36925,6 @@ "plasmid_name": "pDest eGFP CUGBP1", "sequence-type": "depositor-full", "addgene_id": "61276", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -34993,7 +36976,6 @@ "plasmid_name": "His8:MBP-tev-Leu-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83386", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -35032,7 +37014,10 @@ "plasmid_name": "pDestTol2-actinb-Hs.KCNJ13-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164945", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB1", @@ -35079,7 +37064,10 @@ "plasmid_name": "pDONR221-SPNS2_STOP", "sequence-type": "addgene-full", "addgene_id": "161473", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -35110,7 +37098,10 @@ "plasmid_name": "pAAV_MLP-BC0253-luc2", "sequence-type": "addgene-full", "addgene_id": "214668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -35156,7 +37147,10 @@ "plasmid_name": "pT2-cryR;mafbbCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90137", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -35204,7 +37198,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-S32-KD", "sequence-type": "addgene-full", "addgene_id": "140299", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -35256,7 +37253,10 @@ "plasmid_name": "MAC_N_GATA4", "sequence-type": "addgene-full", "addgene_id": "167758", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -35301,7 +37301,10 @@ "plasmid_name": "pRATIO2151", "sequence-type": "addgene-full", "addgene_id": "141300", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -35350,7 +37353,10 @@ "plasmid_name": "pHAGE-PIK3CA-I112N", "sequence-type": "addgene-full", "addgene_id": "116502", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -35404,7 +37410,10 @@ "plasmid_name": "pDONR223-PAK4", "sequence-type": "addgene-full", "addgene_id": "23713", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -35436,7 +37445,10 @@ "plasmid_name": "pHAGE-PIK3R1-L380delL", "sequence-type": "addgene-full", "addgene_id": "116599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -35487,7 +37499,10 @@ "plasmid_name": "pDONR221_SLC9A9", "sequence-type": "addgene-full", "addgene_id": "132211", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -35518,7 +37533,10 @@ "plasmid_name": "Zed_vector_tol2_+15.2prox1a:EGFP_XCA:DsRed2", "sequence-type": "addgene-full", "addgene_id": "218206", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.202525", + "https://www.ncbi.nlm.nih.gov/pubmed/38722096" + ], "kit": null, "att_sites": [ "attB1", @@ -35570,7 +37588,10 @@ "plasmid_name": "p667-UBC-NRF3-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207816", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -35635,7 +37656,10 @@ "plasmid_name": "pDONR223_SNAI1_WT", "sequence-type": "addgene-full", "addgene_id": "82164", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -35664,7 +37688,10 @@ "plasmid_name": "pAAV2ss-U6-sgHTT1-7sk-sgCas9", "sequence-type": "addgene-full", "addgene_id": "190900", - "references": [], + "references": [ + "https://doi.org/10.1016/j.omtm.2023.03.013", + "https://www.ncbi.nlm.nih.gov/pubmed/37090478" + ], "kit": null, "att_sites": [ "attB1", @@ -35700,7 +37727,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV PrM", "sequence-type": "addgene-full", "addgene_id": "145360", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -35743,7 +37773,9 @@ "plasmid_name": "pMpGWB418", "sequence-type": "depositor-full", "addgene_id": "68683", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -35792,7 +37824,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TP53RK_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170589", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -35858,7 +37889,10 @@ "plasmid_name": "C234-E26: attB2r-Halotag-attB3", "sequence-type": "addgene-full", "addgene_id": "162915", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -35888,7 +37922,6 @@ "plasmid_name": "R777-E273 Hs.RCE1", "sequence-type": "depositor-full", "addgene_id": "70557", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -35900,7 +37933,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3A G120A", "sequence-type": "addgene-full", "addgene_id": "123090", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -35946,7 +37982,10 @@ "plasmid_name": "pHAGE-SIRPB1-R124Q", "sequence-type": "addgene-full", "addgene_id": "116679", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -36001,7 +38040,10 @@ "plasmid_name": "pShuttle.Cre", "sequence-type": "addgene-full", "addgene_id": "192930", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "att_sites": [ "attL1", @@ -36038,7 +38080,10 @@ "plasmid_name": "pMuLE ENTR CMV PuroR L3-L2", "sequence-type": "depositor-full", "addgene_id": "62163", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -36074,7 +38119,6 @@ "plasmid_name": "pAG416-GAL-RNQ1", "sequence-type": "addgene-full", "addgene_id": "181706", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -36127,7 +38171,6 @@ "plasmid_name": "R777-E150 Hs.PAK2-nostop", "sequence-type": "depositor-full", "addgene_id": "70434", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -36155,7 +38198,10 @@ "plasmid_name": "BirA-Myc_N_HNF1a", "sequence-type": "addgene-full", "addgene_id": "167710", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -36200,7 +38246,10 @@ "plasmid_name": "pAG416GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14387", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -36262,7 +38311,10 @@ "plasmid_name": "pLD-puro-Cc-PRDX5K85R-VA", "sequence-type": "addgene-full", "addgene_id": "98691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "att_sites": [ "attB1", @@ -36324,7 +38376,10 @@ "plasmid_name": "pWZL Neo Myr Flag LIMK1", "sequence-type": "addgene-full", "addgene_id": "20512", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -36365,7 +38420,6 @@ "plasmid_name": "BRAF - P453A in pENTR", "sequence-type": "addgene-full", "addgene_id": "216610", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -36395,7 +38449,10 @@ "plasmid_name": "pME-Ruby2-NS", "sequence-type": "addgene-full", "addgene_id": "166569", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "att_sites": [ "attL1", @@ -36428,7 +38485,10 @@ "plasmid_name": "pDONR223-ZNF436", "sequence-type": "addgene-full", "addgene_id": "88589", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -36457,7 +38517,10 @@ "plasmid_name": "pDONR221_SLC35D2", "sequence-type": "addgene-full", "addgene_id": "132122", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132122.addgene-full.gb" }, @@ -36466,7 +38529,9 @@ "plasmid_name": "pDONR223-TAF5-\u2206ex8_WobbleMut", "sequence-type": "addgene-full", "addgene_id": "209054", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attL1", @@ -36495,7 +38560,10 @@ "plasmid_name": "pLX311 hcRed1", "sequence-type": "addgene-full", "addgene_id": "117733", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -36554,7 +38622,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0382-luc2", "sequence-type": "addgene-full", "addgene_id": "214620", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -36598,7 +38669,10 @@ "plasmid_name": "pDONR223_DIABLO_WT", "sequence-type": "addgene-full", "addgene_id": "82257", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -36627,7 +38701,10 @@ "plasmid_name": "pENTR_L1-Turbo-NES-YFP-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127358", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL1", @@ -36664,7 +38741,10 @@ "plasmid_name": "pAG303GPD-ccdB-EGFP", "sequence-type": "addgene-full", "addgene_id": "14182", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -36722,7 +38802,10 @@ "plasmid_name": "3xflag-APEX2-LRRK2", "sequence-type": "addgene-full", "addgene_id": "164622", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "att_sites": [ "attB1", @@ -36768,7 +38851,6 @@ "plasmid_name": "Hs.KRAS4b K104Q", "sequence-type": "depositor-full", "addgene_id": "83153", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -36794,7 +38876,10 @@ "plasmid_name": "PB-CRX-T2A-NeuroD1", "sequence-type": "addgene-full", "addgene_id": "194607", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2022.103987", + "https://www.ncbi.nlm.nih.gov/pubmed/35330684" + ], "kit": null, "att_sites": [ "attB1", @@ -36848,7 +38933,10 @@ "plasmid_name": "pHAGE-PTEN-R130Q", "sequence-type": "addgene-full", "addgene_id": "116631", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -36897,7 +38985,10 @@ "plasmid_name": "pENTR-R4-H1-BbsI-L2", "sequence-type": "addgene-full", "addgene_id": "141033", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -36920,7 +39011,10 @@ "plasmid_name": "pENTR-R4R3-2xmRuby-N", "sequence-type": "addgene-full", "addgene_id": "113753", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -36955,7 +39049,10 @@ "plasmid_name": "pWZL Neo Myr Flag PLK1", "sequence-type": "addgene-full", "addgene_id": "20589", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -36996,7 +39093,10 @@ "plasmid_name": "pLV-PLXNB2", "sequence-type": "addgene-full", "addgene_id": "86237", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "att_sites": [ "attB1", @@ -37056,7 +39156,10 @@ "plasmid_name": "YAP1 (S6A) - V5 in pLX304", "sequence-type": "addgene-full", "addgene_id": "42562", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/23245941" + ], "kit": null, "att_sites": [ "attB1", @@ -37115,7 +39218,10 @@ "plasmid_name": "pDONR223-ERBB3", "sequence-type": "addgene-full", "addgene_id": "23874", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -37147,7 +39253,10 @@ "plasmid_name": "pDONR221_SLC25A26", "sequence-type": "addgene-full", "addgene_id": "132259", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -37178,7 +39287,10 @@ "plasmid_name": "Fragment1 with TLS2", "sequence-type": "addgene-full", "addgene_id": "196983", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-022-01585-8", + "https://www.ncbi.nlm.nih.gov/pubmed/36593415" + ], "kit": null, "att_sites": [ "attL1", @@ -37203,7 +39315,6 @@ "plasmid_name": "g4s pD47", "sequence-type": "addgene-full", "addgene_id": "117448", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -37255,7 +39366,10 @@ "plasmid_name": "pDONR223_ISX_p.R86C", "sequence-type": "addgene-full", "addgene_id": "81365", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -37287,7 +39401,10 @@ "plasmid_name": "pZA10", "sequence-type": "addgene-full", "addgene_id": "158488", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -37316,7 +39433,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab5c", "sequence-type": "addgene-full", "addgene_id": "166426", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -37360,7 +39476,6 @@ "plasmid_name": "pDONR221-HMGN1", "sequence-type": "addgene-full", "addgene_id": "192718", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -37391,7 +39506,10 @@ "plasmid_name": "C121-E02: ffLuc2", "sequence-type": "addgene-full", "addgene_id": "162889", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -37424,7 +39542,10 @@ "plasmid_name": "pLX317 GFP", "sequence-type": "addgene-full", "addgene_id": "193681", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -37488,7 +39609,10 @@ "plasmid_name": "pDL214", "sequence-type": "addgene-full", "addgene_id": "175923", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -37512,7 +39636,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aa3.8", "sequence-type": "addgene-full", "addgene_id": "136376", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL2", @@ -37542,7 +39669,6 @@ "plasmid_name": "IDG_LRRC55_OE_1", "sequence-type": "addgene-full", "addgene_id": "161694", - "references": [], "kit": null, "file": "data/addgene_plasmids/161694.addgene-full.gb" }, @@ -37551,7 +39677,6 @@ "plasmid_name": "pAG416GAL-EMCV_3C", "sequence-type": "addgene-full", "addgene_id": "201941", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -37602,7 +39727,10 @@ "plasmid_name": "pMx/ATP10D(E215Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209260", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "att_sites": [ "attB1", @@ -37637,7 +39765,10 @@ "plasmid_name": "pJB553", "sequence-type": "addgene-full", "addgene_id": "115963", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115963.addgene-full.gb" }, @@ -37646,7 +39777,6 @@ "plasmid_name": "pSLIK luciferase-V5 neo", "sequence-type": "addgene-full", "addgene_id": "220364", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -37715,7 +39845,6 @@ "plasmid_name": "pENTR-Venus", "sequence-type": "addgene-full", "addgene_id": "139551", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -37750,7 +39879,6 @@ "plasmid_name": "p667-UBC-CDK12-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135244", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -37815,7 +39943,10 @@ "plasmid_name": "pEZY3", "sequence-type": "depositor-full", "addgene_id": "18672", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "att_sites": [ "attR1", @@ -37871,7 +40002,10 @@ "plasmid_name": "pcDNA3.2 V5-DEST 3XFlag-SRSF3", "sequence-type": "addgene-full", "addgene_id": "46736", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -37922,7 +40056,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-UD", "sequence-type": "addgene-full", "addgene_id": "140305", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -37974,7 +40111,10 @@ "plasmid_name": "pCK007 pME KalTa4", "sequence-type": "addgene-full", "addgene_id": "195965", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195965.addgene-full.gb" }, @@ -37983,7 +40123,9 @@ "plasmid_name": "p4P1R_EC1.2en-EC1.1p", "sequence-type": "addgene-full", "addgene_id": "213912", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.5029" + ], "kit": null, "att_sites": [ "attL4", @@ -38014,7 +40156,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-4", "sequence-type": "depositor-full", "addgene_id": "46699", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -38064,7 +40209,10 @@ "plasmid_name": "p415PGK1-AtMAX1(pYL759)", "sequence-type": "addgene-full", "addgene_id": "178289", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -38108,7 +40256,10 @@ "plasmid_name": "tetO-FOSL1", "sequence-type": "addgene-full", "addgene_id": "170687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -38170,7 +40321,9 @@ "plasmid_name": "pMpGWB213", "sequence-type": "depositor-full", "addgene_id": "68604", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -38217,7 +40370,10 @@ "plasmid_name": "BTK-APEX2-P2A-mKate2", "sequence-type": "depositor-full", "addgene_id": "67653", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -38262,7 +40418,10 @@ "plasmid_name": "pHAGE-PIK3CG-E267K", "sequence-type": "addgene-full", "addgene_id": "116577", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -38317,7 +40476,10 @@ "plasmid_name": "pAG414GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14263", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -38377,7 +40539,10 @@ "plasmid_name": "pENTR223-CMV-Cre-U6-sgNotch2#1-U6-sgRb1-U6-sgTrp53-U6-sgRbl2", "sequence-type": "addgene-full", "addgene_id": "209069", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-21-1991", + "https://www.ncbi.nlm.nih.gov/pubmed/34810201" + ], "kit": null, "att_sites": [ "attB3", @@ -38419,7 +40584,10 @@ "plasmid_name": "pHAGE-TGFB1-S192*", "sequence-type": "addgene-full", "addgene_id": "116697", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -38469,7 +40637,10 @@ "plasmid_name": "pDONR221-SLC51A_STOP", "sequence-type": "addgene-full", "addgene_id": "161406", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -38500,7 +40671,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-BirA(R118G)-YFP-NLS", "sequence-type": "addgene-full", "addgene_id": "127365", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attB1", @@ -38549,7 +40723,10 @@ "plasmid_name": "pT2-cryR;yrkCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90142", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -38597,7 +40774,10 @@ "plasmid_name": "Active Wnt2-V5", "sequence-type": "addgene-full", "addgene_id": "43809", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -38645,7 +40825,10 @@ "plasmid_name": "pDEST-cDNA5-FRT/TO-3*Flag-APEX2 C-term", "sequence-type": "addgene-full", "addgene_id": "182926", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/182926.addgene-full.gb" }, @@ -38654,7 +40837,10 @@ "plasmid_name": "pENTR223-EBNALP", "sequence-type": "addgene-full", "addgene_id": "195817", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -38683,7 +40869,10 @@ "plasmid_name": "pLenti6.2-ccdB-Renilla", "sequence-type": "addgene-full", "addgene_id": "87073", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.047", + "https://www.ncbi.nlm.nih.gov/pubmed/22939624" + ], "kit": null, "att_sites": [ "attR1", @@ -38747,7 +40936,10 @@ "plasmid_name": "Flag-HA-USP46", "sequence-type": "addgene-full", "addgene_id": "22584", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -38792,7 +40984,10 @@ "plasmid_name": "C514-E26: attB5r-RU5u-myc-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162960", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -38822,7 +41017,6 @@ "plasmid_name": "pLIX403-ccdB-G418", "sequence-type": "addgene-full", "addgene_id": "158561", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -38882,7 +41076,10 @@ "plasmid_name": "pcDNA3.1_nV5-AMOTL1", "sequence-type": "addgene-full", "addgene_id": "172998", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -38933,7 +41130,10 @@ "plasmid_name": "pDONR221_SLC6A5", "sequence-type": "addgene-full", "addgene_id": "132184", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -38964,7 +41164,9 @@ "plasmid_name": "pLX317-CELF4", "sequence-type": "addgene-full", "addgene_id": "115445", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "att_sites": [ "attB1", @@ -39024,7 +41226,10 @@ "plasmid_name": "pDONR221-SLC22A25_STOP", "sequence-type": "depositor-full", "addgene_id": "161178", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -39055,7 +41260,10 @@ "plasmid_name": "pDONR221_SLC33A1", "sequence-type": "addgene-full", "addgene_id": "132264", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -39086,7 +41294,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir193b-3", "sequence-type": "depositor-full", "addgene_id": "46733", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -39136,7 +41347,10 @@ "plasmid_name": "pLentiPGK Puro DEST JNKKTR EE Clover", "sequence-type": "addgene-full", "addgene_id": "90239", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "att_sites": [ "attB1", @@ -39198,7 +41412,6 @@ "plasmid_name": "g16t pDONR", "sequence-type": "addgene-full", "addgene_id": "117475", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -39229,7 +41442,10 @@ "plasmid_name": "pDONR223_EIF2A_WT", "sequence-type": "addgene-full", "addgene_id": "82111", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -39258,7 +41474,10 @@ "plasmid_name": "p8133 MSCV GFP Neo C-HA", "sequence-type": "addgene-full", "addgene_id": "184522", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "att_sites": [ "attB1", @@ -39307,7 +41526,10 @@ "plasmid_name": "pDONR223_U2AF1_p.S34F", "sequence-type": "addgene-full", "addgene_id": "81358", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -39339,7 +41561,10 @@ "plasmid_name": "MAC_N_STAT4", "sequence-type": "addgene-full", "addgene_id": "167802", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -39384,7 +41609,10 @@ "plasmid_name": "CLDN8_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176963", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -39436,7 +41664,6 @@ "plasmid_name": "pDONR221-kcnj6", "sequence-type": "addgene-full", "addgene_id": "192725", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -39467,7 +41694,10 @@ "plasmid_name": "pLgw EcoDam-V5-RFC1", "sequence-type": "depositor-full", "addgene_id": "59209", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "att_sites": [ "attR1", @@ -39525,7 +41755,10 @@ "plasmid_name": "RET-SHC", "sequence-type": "addgene-full", "addgene_id": "139617", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -39569,7 +41802,10 @@ "plasmid_name": "pDONR221_SLC25A14", "sequence-type": "addgene-full", "addgene_id": "132050", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -39600,7 +41836,10 @@ "plasmid_name": "GFP-CYLD-C601A", "sequence-type": "addgene-full", "addgene_id": "60028", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0703268104", + "https://www.ncbi.nlm.nih.gov/pubmed/17495026" + ], "kit": null, "att_sites": [ "attB1", @@ -39652,7 +41891,10 @@ "plasmid_name": "pENTREGFP2", "sequence-type": "addgene-full", "addgene_id": "22450", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attL1", @@ -39689,7 +41931,10 @@ "plasmid_name": "pTORKm43GW", "sequence-type": "addgene-full", "addgene_id": "112897", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01516-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31575765" + ], "kit": null, "att_sites": [ "attR3", @@ -39734,7 +41979,10 @@ "plasmid_name": "pMpGE_En03-sgRNA_Target1 (Mpphot)", "sequence-type": "addgene-full", "addgene_id": "186726", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbrc.2018.06.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29885839" + ], "kit": null, "att_sites": [ "attL1", @@ -39766,7 +42014,10 @@ "plasmid_name": "MAC-ANPEP", "sequence-type": "addgene-full", "addgene_id": "172418", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -39811,7 +42062,6 @@ "plasmid_name": "pEN_TT DNM1L-V5", "sequence-type": "addgene-full", "addgene_id": "220359", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -39840,7 +42090,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS8", "sequence-type": "depositor-full", "addgene_id": "20247", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "att_sites": [ "attB1", @@ -39873,7 +42126,10 @@ "plasmid_name": "pDONR223-RET", "sequence-type": "addgene-full", "addgene_id": "23906", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -39905,7 +42161,10 @@ "plasmid_name": "pbZIP9:GFP-GUS", "sequence-type": "addgene-full", "addgene_id": "172483", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koaa060", + "https://www.ncbi.nlm.nih.gov/pubmed/33955487" + ], "kit": null, "att_sites": [ "attB1", @@ -39942,7 +42201,9 @@ "plasmid_name": "pDONR221-LAP3", "sequence-type": "addgene-full", "addgene_id": "217660", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-4644671/v1" + ], "kit": null, "att_sites": [ "attL1", @@ -39973,7 +42234,10 @@ "plasmid_name": "pDEST40-Arl13b89", "sequence-type": "addgene-full", "addgene_id": "40874", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E10-12-0994", + "https://www.ncbi.nlm.nih.gov/pubmed/21976698" + ], "kit": null, "att_sites": [ "attB1", @@ -40024,7 +42288,6 @@ "plasmid_name": "pHAGE-CMV-Flag-BRSK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135279", - "references": [], "kit": null, "file": "data/addgene_plasmids/135279.addgene-full.gb" }, @@ -40033,7 +42296,6 @@ "plasmid_name": "pGP8G-ccdB", "sequence-type": "depositor-full", "addgene_id": "83884", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -40079,7 +42341,6 @@ "plasmid_name": "pCM1.60", "sequence-type": "depositor-full", "addgene_id": "19594", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -40110,7 +42371,6 @@ "plasmid_name": "IDG_KCNK12_OE_1", "sequence-type": "addgene-full", "addgene_id": "161632", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -40169,7 +42429,10 @@ "plasmid_name": "765 pME nls mCerulean", "sequence-type": "addgene-full", "addgene_id": "195958", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195958.addgene-full.gb" }, @@ -40178,7 +42441,10 @@ "plasmid_name": "pLenti-CMV-Blast-PIP-FUCCI", "sequence-type": "addgene-full", "addgene_id": "138715", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "att_sites": [ "attB1", @@ -40249,7 +42515,10 @@ "plasmid_name": "pYPQ290-D977A", "sequence-type": "addgene-full", "addgene_id": "129674", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -40281,7 +42550,10 @@ "plasmid_name": "p221z-CAS9p-TagRFP-t35s", "sequence-type": "addgene-full", "addgene_id": "118386", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "att_sites": [ "attL1", @@ -40316,7 +42588,10 @@ "plasmid_name": "pHAGE-FGFR4", "sequence-type": "addgene-full", "addgene_id": "116743", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -40366,7 +42641,10 @@ "plasmid_name": "pHAGE-BRAF-K601N", "sequence-type": "addgene-full", "addgene_id": "116169", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -40421,7 +42699,10 @@ "plasmid_name": "pAG424GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14319", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -40433,7 +42714,10 @@ "plasmid_name": "pGWB407", "sequence-type": "depositor-full", "addgene_id": "74801", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -40481,7 +42765,6 @@ "plasmid_name": "pCW57.1", "sequence-type": "addgene-full", "addgene_id": "41393", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -40540,7 +42823,9 @@ "plasmid_name": "pPB-cT3G-cERP2-ZCWPW1", "sequence-type": "addgene-full", "addgene_id": "222543", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -40586,7 +42871,10 @@ "plasmid_name": "pDONR223_BCL6_WT", "sequence-type": "addgene-full", "addgene_id": "81869", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL2" @@ -40613,7 +42901,10 @@ "plasmid_name": "KA901: pMVP (L3-L2) HA tag + pA; EF1a::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121804", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -40654,7 +42945,10 @@ "plasmid_name": "ATX3-JD", "sequence-type": "addgene-full", "addgene_id": "184247", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "att_sites": [ "attB1", @@ -40688,7 +42982,6 @@ "plasmid_name": "R777-E046 Hs.E2F1-nostop", "sequence-type": "depositor-full", "addgene_id": "70330", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -40716,7 +43009,10 @@ "plasmid_name": "pMpGE_En03-gR085", "sequence-type": "addgene-full", "addgene_id": "188552", - "references": [], + "references": [ + "https://doi.org/10.5511/plantbiotechnology.22.0810a", + "https://www.ncbi.nlm.nih.gov/pubmed/37283617" + ], "kit": null, "att_sites": [ "attL1", @@ -40748,7 +43044,10 @@ "plasmid_name": "pCMU-TGN41r", "sequence-type": "depositor-full", "addgene_id": "61176", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -40794,7 +43093,10 @@ "plasmid_name": "pGCS-C3m(3xFLAG)", "sequence-type": "addgene-full", "addgene_id": "85726", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -40842,7 +43144,10 @@ "plasmid_name": "pHAGE-EGFR-P848L", "sequence-type": "addgene-full", "addgene_id": "116289", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -40896,7 +43201,10 @@ "plasmid_name": "pDONR221_SLC27A2", "sequence-type": "addgene-full", "addgene_id": "131867", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -40927,7 +43235,10 @@ "plasmid_name": "TFORF3216", "sequence-type": "addgene-full", "addgene_id": "144692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -40987,7 +43298,10 @@ "plasmid_name": "TFORF3450", "sequence-type": "addgene-full", "addgene_id": "144926", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -41047,7 +43361,10 @@ "plasmid_name": "PRPF19", "sequence-type": "addgene-full", "addgene_id": "155847", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -41090,7 +43407,10 @@ "plasmid_name": "pDONR221-MFSD4A_STOP", "sequence-type": "addgene-full", "addgene_id": "161083", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -41122,7 +43442,9 @@ "plasmid_name": "nTALECD for_CYO1 exon1_1397NC", "sequence-type": "addgene-full", "addgene_id": "193376", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "att_sites": [ "attB1", @@ -41169,7 +43491,10 @@ "plasmid_name": "pDONR223_NKX2-1_Long", "sequence-type": "addgene-full", "addgene_id": "221471", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attL1", @@ -41198,7 +43523,9 @@ "plasmid_name": "pMpGWB129", "sequence-type": "depositor-full", "addgene_id": "68583", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -41245,7 +43572,10 @@ "plasmid_name": "pDONR223_BCL6_WT", "sequence-type": "addgene-full", "addgene_id": "81746", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -41275,7 +43605,9 @@ "plasmid_name": "pME-3x-FLAG-Ubiquitin (JDW 1098)", "sequence-type": "addgene-full", "addgene_id": "224513", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224513.addgene-full.gb" }, @@ -41284,7 +43616,10 @@ "plasmid_name": "R620-M18-303: CMV51p> SARS-CoV-2 S-RBD(319-541)-His6 K417T/E484K/N501Y", "sequence-type": "addgene-full", "addgene_id": "170202", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -41338,7 +43673,10 @@ "plasmid_name": "pDONR221-SLC7A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161363", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -41370,7 +43708,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-lin-4", "sequence-type": "depositor-full", "addgene_id": "46649", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -41420,7 +43761,10 @@ "plasmid_name": "TFORF3096", "sequence-type": "addgene-full", "addgene_id": "144572", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -41480,7 +43824,10 @@ "plasmid_name": "pcDNA 3.2-FUS-1-526aa-V5", "sequence-type": "addgene-full", "addgene_id": "29609", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.1000614", + "https://www.ncbi.nlm.nih.gov/pubmed/21541367" + ], "kit": null, "att_sites": [ "attB1", @@ -41530,7 +43877,10 @@ "plasmid_name": "pAG413GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14357", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -41590,7 +43940,10 @@ "plasmid_name": "pDONR223_BAP1_p.N299S", "sequence-type": "addgene-full", "addgene_id": "81572", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -41623,7 +43976,10 @@ "plasmid_name": "TFORF3270", "sequence-type": "addgene-full", "addgene_id": "144746", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -41683,7 +44039,10 @@ "plasmid_name": "p3E-rab11a", "sequence-type": "addgene-full", "addgene_id": "109662", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -41714,7 +44073,6 @@ "plasmid_name": "pENTR223 Rab11A S25N-STOP", "sequence-type": "addgene-full", "addgene_id": "228032", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -41743,7 +44101,6 @@ "plasmid_name": "pME-TA", "sequence-type": "depositor-full", "addgene_id": "49337", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -41778,7 +44135,10 @@ "plasmid_name": "pAdCMV/V5-DEST-STAT3C-3xFlag", "sequence-type": "addgene-full", "addgene_id": "99264", - "references": [], + "references": [ + "https://doi.org/10.1152/ajpcell.00235.2017", + "https://www.ncbi.nlm.nih.gov/pubmed/29351406" + ], "kit": null, "att_sites": [ "attB1", @@ -41815,7 +44175,10 @@ "plasmid_name": "pDONR223-ZNF232", "sequence-type": "addgene-full", "addgene_id": "88305", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -41844,7 +44207,10 @@ "plasmid_name": "p3E-Rac1-DN", "sequence-type": "addgene-full", "addgene_id": "109582", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -41875,7 +44241,10 @@ "plasmid_name": "p8552 pLIX-PTPN14 \u0394PPXY3/4", "sequence-type": "addgene-full", "addgene_id": "221645", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "att_sites": [ "attB1", @@ -41930,7 +44299,10 @@ "plasmid_name": "5'-3xFLAG Mllt1+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212067", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -41971,7 +44343,10 @@ "plasmid_name": "pDONR223_EGFR_WT", "sequence-type": "addgene-full", "addgene_id": "81926", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -42004,7 +44379,10 @@ "plasmid_name": "RNF6_pLX307", "sequence-type": "addgene-full", "addgene_id": "98366", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -42064,7 +44442,6 @@ "plasmid_name": "pDest-566", "sequence-type": "addgene-full", "addgene_id": "11517", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -42112,7 +44489,10 @@ "plasmid_name": "pDONR223_TRIM55_p.R322H", "sequence-type": "addgene-full", "addgene_id": "81609", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -42144,7 +44524,6 @@ "plasmid_name": "R777-E335 Hs.STK11", "sequence-type": "depositor-full", "addgene_id": "70619", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -42172,7 +44551,6 @@ "plasmid_name": "Hs.HRAS G12D", "sequence-type": "depositor-full", "addgene_id": "83183", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -42199,7 +44577,10 @@ "plasmid_name": "actc1b-mKate2-Dnm2a", "sequence-type": "addgene-full", "addgene_id": "109519", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109519.addgene-full.gb" }, @@ -42208,7 +44589,10 @@ "plasmid_name": "pDONR221_MFSD11", "sequence-type": "addgene-full", "addgene_id": "131928", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -42239,7 +44623,6 @@ "plasmid_name": "pGENT_GW_aco_mScarlet3", "sequence-type": "addgene-full", "addgene_id": "225991", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -42286,7 +44669,10 @@ "plasmid_name": "TFORF3393", "sequence-type": "addgene-full", "addgene_id": "144869", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144869.addgene-full.gb" }, @@ -42295,7 +44681,10 @@ "plasmid_name": "pCM5.60", "sequence-type": "depositor-full", "addgene_id": "19374", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -42326,7 +44715,10 @@ "plasmid_name": "pMXs-ms-Klf2", "sequence-type": "depositor-full", "addgene_id": "50786", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "att_sites": [ "attB1", @@ -42354,7 +44746,10 @@ "plasmid_name": "pDONR223_MAPK7_p.T28I", "sequence-type": "addgene-full", "addgene_id": "82814", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -42383,7 +44778,10 @@ "plasmid_name": "p5E-6xgata2aECEbasp", "sequence-type": "addgene-full", "addgene_id": "132968", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "att_sites": [ "attL4", @@ -42414,7 +44812,10 @@ "plasmid_name": "pHAGE-BRAF-G469E", "sequence-type": "addgene-full", "addgene_id": "116154", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -42470,7 +44871,10 @@ "plasmid_name": "pDONR223_EYS_WT", "sequence-type": "addgene-full", "addgene_id": "81854", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -42502,7 +44906,6 @@ "plasmid_name": "pCWXPGR-pTF-Kir2.1", "sequence-type": "addgene-full", "addgene_id": "114284", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -42562,7 +44965,10 @@ "plasmid_name": "pDONR223_TP53_p.M246R", "sequence-type": "addgene-full", "addgene_id": "81400", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -42595,7 +45001,10 @@ "plasmid_name": "pEPYCdKN0011", "sequence-type": "addgene-full", "addgene_id": "196152", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attB1", @@ -42635,7 +45044,10 @@ "plasmid_name": "pAAV-rBrokenheart", "sequence-type": "addgene-full", "addgene_id": "203394", - "references": [], + "references": [ + "https://doi.org/10.1002/cpz1.883", + "https://www.ncbi.nlm.nih.gov/pubmed/37755132" + ], "kit": null, "att_sites": [ "attB1", @@ -42684,7 +45096,10 @@ "plasmid_name": "KL301: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS-p300core", "sequence-type": "addgene-full", "addgene_id": "121839", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -42719,7 +45134,10 @@ "plasmid_name": "pYPQ151", "sequence-type": "depositor-full", "addgene_id": "69302", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL1", @@ -42754,7 +45172,10 @@ "plasmid_name": "TFORF3504", "sequence-type": "addgene-full", "addgene_id": "144980", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -42814,7 +45235,9 @@ "plasmid_name": "pDONR221-GNMT", "sequence-type": "addgene-full", "addgene_id": "166177", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -42845,7 +45268,10 @@ "plasmid_name": "p3E-rab42a", "sequence-type": "addgene-full", "addgene_id": "109710", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -42876,7 +45302,10 @@ "plasmid_name": "TFORF3158", "sequence-type": "addgene-full", "addgene_id": "144634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -42936,7 +45365,10 @@ "plasmid_name": "pDEST 527-XERICO", "sequence-type": "addgene-full", "addgene_id": "118671", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -42978,7 +45410,10 @@ "plasmid_name": "pME-TagBFP2-NS", "sequence-type": "addgene-full", "addgene_id": "80502", - "references": [], + "references": [ + "https://doi.org/10.1080/21592799.2017.1301151", + "https://www.ncbi.nlm.nih.gov/pubmed/28396820" + ], "kit": null, "att_sites": [ "attL1", @@ -43010,7 +45445,10 @@ "plasmid_name": "pDONR-IAA16", "sequence-type": "depositor-full", "addgene_id": "83854", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -43041,7 +45479,10 @@ "plasmid_name": "KP101: pMVP (L5-L4) Puro-P2A", "sequence-type": "addgene-full", "addgene_id": "121716", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -43075,7 +45516,10 @@ "plasmid_name": "pDONR223_MTERFD1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82966", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -43104,7 +45548,10 @@ "plasmid_name": "pEN_TT 3xFLAG-KPNA2", "sequence-type": "addgene-full", "addgene_id": "192306", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192306.addgene-full.gb" }, @@ -43113,7 +45560,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf7b", "sequence-type": "addgene-full", "addgene_id": "158376", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -43158,7 +45608,10 @@ "plasmid_name": "pINDUCER22-MKK6E-Flag", "sequence-type": "addgene-full", "addgene_id": "99259", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0161975", + "https://www.ncbi.nlm.nih.gov/pubmed/27603666" + ], "kit": null, "att_sites": [ "attB1", @@ -43210,7 +45663,6 @@ "plasmid_name": "pLPC-C-SF-TAP-DEST-TLK1- Q479E", "sequence-type": "addgene-full", "addgene_id": "218830", - "references": [], "kit": null, "att_sites": [ "attB2" @@ -43245,7 +45697,10 @@ "plasmid_name": "GFP-UBR5", "sequence-type": "addgene-full", "addgene_id": "52050", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.039", + "https://www.ncbi.nlm.nih.gov/pubmed/22884692" + ], "kit": null, "att_sites": [ "attB1", @@ -43297,7 +45752,10 @@ "plasmid_name": "pDEST-CMV-C-EGFP", "sequence-type": "addgene-full", "addgene_id": "122844", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attR1", @@ -43353,7 +45811,10 @@ "plasmid_name": "pDONR221-SLC19A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161211", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -43384,7 +45845,10 @@ "plasmid_name": "pDONR221-kcnj11", "sequence-type": "addgene-full", "addgene_id": "173139", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173139.addgene-full.gb" }, @@ -43393,7 +45857,10 @@ "plasmid_name": "pDONR223_OR2M2_p.E232V", "sequence-type": "addgene-full", "addgene_id": "81634", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -43425,7 +45892,10 @@ "plasmid_name": "EDC3", "sequence-type": "addgene-full", "addgene_id": "155561", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB2" @@ -43466,7 +45936,10 @@ "plasmid_name": "actc1b-CD44b-mKate2", "sequence-type": "addgene-full", "addgene_id": "109524", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -43507,7 +45980,10 @@ "plasmid_name": "pHAGE-ERBB3-D297Y", "sequence-type": "addgene-full", "addgene_id": "116360", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -43557,7 +46033,10 @@ "plasmid_name": "TFORF3378", "sequence-type": "addgene-full", "addgene_id": "144854", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -43617,7 +46096,10 @@ "plasmid_name": "p221z-erVenusYFP", "sequence-type": "depositor-full", "addgene_id": "71265", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL1", @@ -43651,7 +46133,10 @@ "plasmid_name": "INTS6", "sequence-type": "addgene-full", "addgene_id": "155681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -43694,7 +46179,10 @@ "plasmid_name": "pDONR221_SLC6A8", "sequence-type": "addgene-full", "addgene_id": "131915", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -43725,7 +46213,6 @@ "plasmid_name": "pUbi_dCas9-BFP-KRAB-gRNA", "sequence-type": "addgene-full", "addgene_id": "221503", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -43770,7 +46257,10 @@ "plasmid_name": "pEBTetBl-CLIP-CCCAP", "sequence-type": "addgene-full", "addgene_id": "136847", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -43815,7 +46305,10 @@ "plasmid_name": "pBTM116-D9", "sequence-type": "addgene-full", "addgene_id": "111232", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-61779-455-1_4", + "https://www.ncbi.nlm.nih.gov/pubmed/22218854" + ], "kit": null, "att_sites": [ "attR1", @@ -43857,7 +46350,10 @@ "plasmid_name": "pDONR223_SMAD4_p.P215S", "sequence-type": "addgene-full", "addgene_id": "82829", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -43886,7 +46382,10 @@ "plasmid_name": "pRU322", "sequence-type": "addgene-full", "addgene_id": "167683", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -43935,7 +46434,6 @@ "plasmid_name": "p663-UBC-ER-TurboID-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214453", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -44001,7 +46499,6 @@ "plasmid_name": "pME tdTomato No stop (for 5' tagging)", "sequence-type": "addgene-full", "addgene_id": "135203", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -44033,7 +46530,6 @@ "plasmid_name": "IDG_CHRNA2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161648", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -44092,7 +46588,6 @@ "plasmid_name": "pLEX305_3xFLAG_STAT1", "sequence-type": "addgene-full", "addgene_id": "220323", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -44152,7 +46647,10 @@ "plasmid_name": "pDEST-CMV mCherry-GFP-LC3B WT", "sequence-type": "addgene-full", "addgene_id": "123230", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -44209,7 +46707,6 @@ "plasmid_name": "R777-E347 Hs.TIAM1", "sequence-type": "depositor-full", "addgene_id": "70631", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -44237,7 +46734,10 @@ "plasmid_name": "pWZL Neo Myr Flag AKAP8L", "sequence-type": "addgene-full", "addgene_id": "20481", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -44278,7 +46778,10 @@ "plasmid_name": "pMx/ATP8B2-HA", "sequence-type": "addgene-full", "addgene_id": "209227", - "references": [], + "references": [ + "https://doi.org/10.1080/10985549.2024.2391829", + "https://www.ncbi.nlm.nih.gov/pubmed/39219493" + ], "kit": null, "att_sites": [ "attB1", @@ -44313,7 +46816,10 @@ "plasmid_name": "TOE1", "sequence-type": "addgene-full", "addgene_id": "156091", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -44356,7 +46862,10 @@ "plasmid_name": "pHAGE-FAM58A", "sequence-type": "addgene-full", "addgene_id": "116739", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116739.addgene-full.gb" }, @@ -44365,7 +46874,6 @@ "plasmid_name": "pLEX307-APN-puro", "sequence-type": "addgene-full", "addgene_id": "158454", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -44425,7 +46933,10 @@ "plasmid_name": "R989-X29-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12V", "sequence-type": "addgene-full", "addgene_id": "159556", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -44466,7 +46977,10 @@ "plasmid_name": "pHAGE-ERGIC1__RANBP17", "sequence-type": "addgene-full", "addgene_id": "116816", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -44517,7 +47031,10 @@ "plasmid_name": "Flag-GFP11-pDEST-C", "sequence-type": "addgene-full", "addgene_id": "118367", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attR1", @@ -44567,7 +47084,10 @@ "plasmid_name": "pGWB525", "sequence-type": "depositor-full", "addgene_id": "74867", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -44613,7 +47133,10 @@ "plasmid_name": "p6346 MSCV-CMV-Flag-HA-Brd4-1-444", "sequence-type": "addgene-full", "addgene_id": "32886", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.01341-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21555454" + ], "kit": null, "att_sites": [ "attB1", @@ -44662,7 +47185,10 @@ "plasmid_name": "pHAGE-NOTCH2NL-S165F", "sequence-type": "addgene-full", "addgene_id": "116442", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -44717,7 +47243,10 @@ "plasmid_name": "pSGE_530_S2-1-CGCG_dCP", "sequence-type": "depositor-full", "addgene_id": "71154", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -44750,7 +47279,10 @@ "plasmid_name": "pAFW-Ago1", "sequence-type": "depositor-full", "addgene_id": "50553", - "references": [], + "references": [ + "https://doi.org/10.1038/nsmb.1630", + "https://www.ncbi.nlm.nih.gov/pubmed/19684602" + ], "kit": null, "att_sites": [ "attB1", @@ -44779,7 +47311,6 @@ "plasmid_name": "pDONR2T18ms", "sequence-type": "depositor-full", "addgene_id": "72645", - "references": [], "kit": null, "att_sites": [ "attP1", @@ -44819,7 +47350,6 @@ "plasmid_name": "R777-E072 Hs.EXOC3-nostop", "sequence-type": "depositor-full", "addgene_id": "70356", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -44831,7 +47361,10 @@ "plasmid_name": "ADD1", "sequence-type": "addgene-full", "addgene_id": "155397", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -44874,7 +47407,10 @@ "plasmid_name": "pHAGE-SIRPB1-D198N", "sequence-type": "addgene-full", "addgene_id": "116676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -44929,7 +47465,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RIOK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170586", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -44995,7 +47530,10 @@ "plasmid_name": "pLenti GW V5 Eco/Dam hum LaminA", "sequence-type": "addgene-full", "addgene_id": "182673", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.141028.112", + "https://www.ncbi.nlm.nih.gov/pubmed/23124521" + ], "kit": null, "att_sites": [ "attB1", @@ -45045,7 +47583,10 @@ "plasmid_name": "pDONR223_CD79B_p.H194N", "sequence-type": "addgene-full", "addgene_id": "81322", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -45077,7 +47618,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-240", "sequence-type": "depositor-full", "addgene_id": "46661", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -45127,7 +47671,10 @@ "plasmid_name": "pHAGE-PIK3R1-K379E", "sequence-type": "addgene-full", "addgene_id": "116596", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -45178,7 +47725,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-ZNF746", "sequence-type": "addgene-full", "addgene_id": "207819", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -45244,7 +47794,10 @@ "plasmid_name": "pCOBL-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209368", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -45289,7 +47842,10 @@ "plasmid_name": "pDONR221_SPNS3", "sequence-type": "addgene-full", "addgene_id": "132285", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -45320,7 +47876,10 @@ "plasmid_name": "p6622 MSCV-P C HA GLTSCR", "sequence-type": "addgene-full", "addgene_id": "34902", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1116776109", + "https://www.ncbi.nlm.nih.gov/pubmed/22232672" + ], "kit": null, "att_sites": [ "attB1", @@ -45365,7 +47924,6 @@ "plasmid_name": "R777-E198 Hs.PRKAB2-nostop", "sequence-type": "depositor-full", "addgene_id": "70482", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -45393,7 +47951,10 @@ "plasmid_name": "MAC_N_FEV", "sequence-type": "addgene-full", "addgene_id": "167757", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -45438,7 +47999,10 @@ "plasmid_name": "pGWB443", "sequence-type": "depositor-full", "addgene_id": "74829", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -45489,7 +48053,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-KD", "sequence-type": "addgene-full", "addgene_id": "140296", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -45541,7 +48108,10 @@ "plasmid_name": "pAG306GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14331", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -45600,7 +48170,10 @@ "plasmid_name": "VPS26C_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176982", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -45652,7 +48225,10 @@ "plasmid_name": "pGC236", "sequence-type": "depositor-full", "addgene_id": "19675", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -45692,7 +48268,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF6", "sequence-type": "addgene-full", "addgene_id": "169392", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -45734,7 +48309,10 @@ "plasmid_name": "Flag-HA-UCHL5", "sequence-type": "addgene-full", "addgene_id": "22565", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -45779,7 +48357,10 @@ "plasmid_name": "pT2-cryR;snx5CE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90138", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -45827,7 +48408,10 @@ "plasmid_name": "pDONR223_FH_WT", "sequence-type": "addgene-full", "addgene_id": "82210", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -45856,7 +48440,10 @@ "plasmid_name": "C453-E25: attB4-mPol2p>-attB5", "sequence-type": "addgene-full", "addgene_id": "162981", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -45882,7 +48469,10 @@ "plasmid_name": "pAAV_MLP-BC0252-luc2", "sequence-type": "addgene-full", "addgene_id": "214667", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -45929,7 +48519,10 @@ "plasmid_name": "Silene_conica _GlnRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202654", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "att_sites": [ "attB1", @@ -45968,7 +48561,6 @@ "plasmid_name": "R777-E034 Hs.DUSP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70318", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -45996,7 +48588,6 @@ "plasmid_name": "His8:MBP-tev-Asp-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83389", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -46035,7 +48626,10 @@ "plasmid_name": "pSBDEST.IP", "sequence-type": "addgene-full", "addgene_id": "79472", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attR1", @@ -46083,7 +48677,10 @@ "plasmid_name": "pINDUCER21-puro_TAOK2", "sequence-type": "addgene-full", "addgene_id": "172979", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -46139,7 +48736,10 @@ "plasmid_name": "TFORF3528", "sequence-type": "depositor-full", "addgene_id": "145004", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -46199,7 +48799,10 @@ "plasmid_name": "pDONR221_SLC39A7", "sequence-type": "addgene-full", "addgene_id": "132165", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -46230,7 +48833,6 @@ "plasmid_name": "IDG_CNGA4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161675", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -46289,7 +48891,10 @@ "plasmid_name": "666 pME-Lnx-1", "sequence-type": "depositor-full", "addgene_id": "49006", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "att_sites": [ "attL1", @@ -46320,7 +48925,10 @@ "plasmid_name": "pDEST47-CYFIP2.GFP", "sequence-type": "addgene-full", "addgene_id": "109140", - "references": [], + "references": [ + "https://doi.org/10.1038/tp.2014.16", + "https://www.ncbi.nlm.nih.gov/pubmed/24667445" + ], "kit": null, "att_sites": [ "attB1", @@ -46372,7 +48980,10 @@ "plasmid_name": "pcDNA5 rtTA BirA eIF4G", "sequence-type": "addgene-full", "addgene_id": "158789", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2020.01.006", + "https://www.ncbi.nlm.nih.gov/pubmed/31999954" + ], "kit": null, "att_sites": [ "attB1", @@ -46413,7 +49024,6 @@ "plasmid_name": "pLEX307-CTSS-puro", "sequence-type": "addgene-full", "addgene_id": "158469", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -46473,7 +49083,10 @@ "plasmid_name": "pCMB-TMEg", "sequence-type": "depositor-full", "addgene_id": "61209", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -46520,7 +49133,10 @@ "plasmid_name": "pYPQ269D", "sequence-type": "addgene-full", "addgene_id": "164717", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -46558,7 +49174,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term PML", "sequence-type": "addgene-full", "addgene_id": "187583", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -46602,7 +49221,10 @@ "plasmid_name": "TU#1448_unc-73b_cDNA", "sequence-type": "addgene-full", "addgene_id": "82362", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1607179113", + "https://www.ncbi.nlm.nih.gov/pubmed/27274054" + ], "kit": null, "att_sites": [ "attL1", @@ -46633,7 +49255,10 @@ "plasmid_name": "pLX_TRC311 ETV4-S", "sequence-type": "depositor-full", "addgene_id": "74983", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/28178529" + ], "kit": null, "att_sites": [ "attB1", @@ -46691,7 +49316,6 @@ "plasmid_name": "R777-E244 Hs.RASGRP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70528", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -46719,7 +49343,10 @@ "plasmid_name": "pENTR221-WNT3", "sequence-type": "addgene-full", "addgene_id": "79500", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -46750,7 +49377,10 @@ "plasmid_name": "pDONR221_SLC25A35", "sequence-type": "addgene-full", "addgene_id": "132017", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -46781,7 +49411,10 @@ "plasmid_name": "pCPP6450", "sequence-type": "addgene-full", "addgene_id": "128731", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2015.05.007", + "https://www.ncbi.nlm.nih.gov/pubmed/26067603" + ], "kit": null, "att_sites": [ "attL1", @@ -46811,7 +49444,10 @@ "plasmid_name": "pAG303-Gal-GR100", "sequence-type": "depositor-full", "addgene_id": "84908", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "att_sites": [ "attB1", @@ -46860,7 +49496,10 @@ "plasmid_name": "SR140", "sequence-type": "addgene-full", "addgene_id": "156037", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -46903,7 +49542,10 @@ "plasmid_name": "pDEST-Myc-FBW7K404/412/R", "sequence-type": "addgene-full", "addgene_id": "200716", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "att_sites": [ "attB1", @@ -46955,7 +49597,10 @@ "plasmid_name": "pENTR-L3-SpCas9-HF4-2A-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141049", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141049.addgene-full.gb" }, @@ -46964,7 +49609,10 @@ "plasmid_name": "TERT - WT", "sequence-type": "addgene-full", "addgene_id": "213827", - "references": [], + "references": [ + "https://doi.org/10.1182/blood.2021011075", + "https://www.ncbi.nlm.nih.gov/pubmed/34019641" + ], "kit": null, "att_sites": [ "attB1", @@ -47019,7 +49667,10 @@ "plasmid_name": "C413-E36: attB4-CMV51p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162927", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -47055,7 +49706,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP II (AA 1-87)", "sequence-type": "addgene-full", "addgene_id": "119317", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -47107,7 +49761,10 @@ "plasmid_name": "pKH143_EGFP-YIPF3 LIR mut", "sequence-type": "addgene-full", "addgene_id": "214975", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "att_sites": [ "attB1", @@ -47160,7 +49817,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS1", "sequence-type": "addgene-full", "addgene_id": "145352", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -47195,7 +49855,6 @@ "plasmid_name": "deltaUBA-short-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "195404", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -47245,7 +49904,10 @@ "plasmid_name": "pTORGm43GWF", "sequence-type": "addgene-full", "addgene_id": "112904", - "references": [], + "references": [ + "https://doi.org/10.1186/s12866-019-1642-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31775609" + ], "kit": null, "att_sites": [ "attR3", @@ -47291,7 +49953,10 @@ "plasmid_name": "pDONR223_PRKACG_WT", "sequence-type": "addgene-full", "addgene_id": "82156", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -47320,7 +49985,10 @@ "plasmid_name": "pLCS101", "sequence-type": "addgene-full", "addgene_id": "209355", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -47364,7 +50032,10 @@ "plasmid_name": "pDONR221_SLC9B1", "sequence-type": "addgene-full", "addgene_id": "132223", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -47395,7 +50066,6 @@ "plasmid_name": "R777-E282 Hs.RHOC-nostop", "sequence-type": "depositor-full", "addgene_id": "70566", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -47423,7 +50093,9 @@ "plasmid_name": "Pinducer20-dCas9-SunTag-2A-BFP", "sequence-type": "addgene-full", "addgene_id": "115779", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30097071" + ], "kit": null, "att_sites": [ "attB1", @@ -47482,7 +50154,10 @@ "plasmid_name": "pHAGE-PIK3CA-Q546R", "sequence-type": "addgene-full", "addgene_id": "116530", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -47537,7 +50212,10 @@ "plasmid_name": "pDONR223-FLT3", "sequence-type": "addgene-full", "addgene_id": "23895", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -47569,7 +50247,10 @@ "plasmid_name": "pCFJ2441 - [1-2] ENTR - Fluor - ce-Dendra2(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159870", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -47600,7 +50281,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP1 124A/125A", "sequence-type": "addgene-full", "addgene_id": "164523", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.10.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33080218" + ], "kit": null, "att_sites": [ "attL1", @@ -47624,7 +50308,10 @@ "plasmid_name": "pDONR223_IKZF5_p.E135K", "sequence-type": "addgene-full", "addgene_id": "81384", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -47656,7 +50343,10 @@ "plasmid_name": "pDEST15-Eps8L2_181-299", "sequence-type": "addgene-full", "addgene_id": "196536", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attB1", @@ -47690,7 +50380,10 @@ "plasmid_name": "pLX311 HRAS", "sequence-type": "addgene-full", "addgene_id": "117749", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -47749,7 +50442,10 @@ "plasmid_name": "Flag-HA-PSMD7", "sequence-type": "addgene-full", "addgene_id": "22558", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -47794,7 +50490,10 @@ "plasmid_name": "pDONR221-SLC39A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161441", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -47825,7 +50524,10 @@ "plasmid_name": "pENTR/D-Topo CDS A. thaliana IMPORTIN ALPHA 2", "sequence-type": "addgene-full", "addgene_id": "175816", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12691", + "https://www.ncbi.nlm.nih.gov/pubmed/25284001" + ], "kit": null, "att_sites": [ "attL1", @@ -47856,7 +50558,10 @@ "plasmid_name": "pXL-BacII-CAG-loxP-STOP-loxP-Venus", "sequence-type": "addgene-full", "addgene_id": "170520", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.4105", + "https://www.ncbi.nlm.nih.gov/pubmed/34458399" + ], "kit": null, "att_sites": [ "attB1", @@ -47910,7 +50615,10 @@ "plasmid_name": "pDONR221_SLC5A3", "sequence-type": "addgene-full", "addgene_id": "132158", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132158.addgene-full.gb" }, @@ -47919,7 +50627,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-V12-neo", "sequence-type": "addgene-full", "addgene_id": "156178", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -47979,7 +50690,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp6", "sequence-type": "addgene-full", "addgene_id": "168848", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -48008,7 +50722,6 @@ "plasmid_name": "Hs.KRAS4b Q61R", "sequence-type": "depositor-full", "addgene_id": "83135", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -48037,7 +50750,10 @@ "plasmid_name": "pENTR-D-kcnj13", "sequence-type": "addgene-full", "addgene_id": "173143", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -48068,7 +50784,10 @@ "plasmid_name": "BMP4_pLX307", "sequence-type": "addgene-full", "addgene_id": "98321", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -48128,7 +50847,10 @@ "plasmid_name": "pDONR221-TAF15 g1172a No Stop", "sequence-type": "addgene-full", "addgene_id": "84898", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1109434108", + "https://www.ncbi.nlm.nih.gov/pubmed/22065782" + ], "kit": null, "att_sites": [ "attL1", @@ -48159,7 +50881,10 @@ "plasmid_name": "pPB-EF1a-MegaGate-HA-Hygro", "sequence-type": "addgene-full", "addgene_id": "175268", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -48208,7 +50933,10 @@ "plasmid_name": "pEBTet-SNAP-HsSAS6", "sequence-type": "addgene-full", "addgene_id": "136789", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -48255,7 +50983,10 @@ "plasmid_name": "pDONR223_EGFR_p.S645C", "sequence-type": "addgene-full", "addgene_id": "82853", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -48285,7 +51016,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hADAM10(aa1-654)", "sequence-type": "addgene-full", "addgene_id": "189558", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -48352,7 +51082,10 @@ "plasmid_name": "Active Wnt8A-V5", "sequence-type": "depositor-full", "addgene_id": "43818", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -48401,7 +51134,10 @@ "plasmid_name": "pCSegfpcherry", "sequence-type": "depositor-full", "addgene_id": "22465", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attB1", @@ -48452,7 +51188,10 @@ "plasmid_name": "pHAGE-FGFR3-A634T", "sequence-type": "addgene-full", "addgene_id": "116381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -48502,7 +51241,10 @@ "plasmid_name": "actc1b-mKate2-rab34a", "sequence-type": "addgene-full", "addgene_id": "109625", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -48544,7 +51286,10 @@ "plasmid_name": "TFORF3225", "sequence-type": "addgene-full", "addgene_id": "144701", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -48604,7 +51349,10 @@ "plasmid_name": "pMuLE ENTR H1 R4-R3", "sequence-type": "depositor-full", "addgene_id": "62105", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -48637,7 +51385,9 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ashL344A-mKate2-splitmVenusN", "sequence-type": "depositor-full", "addgene_id": "69584", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "att_sites": [ "attB1", @@ -48703,7 +51453,10 @@ "plasmid_name": "tetO-NKX2.5", "sequence-type": "addgene-full", "addgene_id": "46029", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "att_sites": [ "attB1", @@ -48765,7 +51518,10 @@ "plasmid_name": "pDONR223_SYCP1_p.E773K", "sequence-type": "addgene-full", "addgene_id": "81535", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -48797,7 +51553,6 @@ "plasmid_name": "R777-E168 Hs.PIK3CD-nostop", "sequence-type": "depositor-full", "addgene_id": "70452", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -48825,7 +51580,10 @@ "plasmid_name": "pDONR221-SLC12A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161110", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -48856,7 +51614,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-M", "sequence-type": "addgene-full", "addgene_id": "154419", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154419.addgene-full.gb" }, @@ -48865,7 +51626,9 @@ "plasmid_name": "p5E-hs_ICAM_short (JDW 1046)", "sequence-type": "addgene-full", "addgene_id": "224480", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -48896,7 +51659,10 @@ "plasmid_name": "pFRT_TO_FlagHA_CELF1", "sequence-type": "addgene-full", "addgene_id": "106099", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "att_sites": [ "attB1", @@ -48941,7 +51707,10 @@ "plasmid_name": "pDONR223-ZNF830", "sequence-type": "addgene-full", "addgene_id": "88342", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -48970,7 +51739,10 @@ "plasmid_name": "pCFJ1001", "sequence-type": "depositor-full", "addgene_id": "44476", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attR3", @@ -49005,7 +51777,10 @@ "plasmid_name": "pENTR223-EBNA3C", "sequence-type": "addgene-full", "addgene_id": "198576", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -49035,7 +51810,10 @@ "plasmid_name": "TFORF3485", "sequence-type": "addgene-full", "addgene_id": "144961", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -49095,7 +51873,9 @@ "plasmid_name": "pDONR221-PNPT1", "sequence-type": "addgene-full", "addgene_id": "166196", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -49126,7 +51906,10 @@ "plasmid_name": "pHAGE-EGFR-G719D", "sequence-type": "addgene-full", "addgene_id": "116255", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -49180,7 +51963,10 @@ "plasmid_name": "pAG424GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14152", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -49240,7 +52026,10 @@ "plasmid_name": "pER8 cHA-XERICO", "sequence-type": "addgene-full", "addgene_id": "118690", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -49279,7 +52068,10 @@ "plasmid_name": "TFORF3059", "sequence-type": "addgene-full", "addgene_id": "144535", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -49339,7 +52131,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-Nucleocapsid2", "sequence-type": "addgene-full", "addgene_id": "168907", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -49368,7 +52163,10 @@ "plasmid_name": "pEN_TTmiRc2_3xflag_CHEK2", "sequence-type": "addgene-full", "addgene_id": "136526", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attL1", @@ -49397,7 +52195,10 @@ "plasmid_name": "pDONR221-SLC5A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161324", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -49428,7 +52229,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.H1047Y", "sequence-type": "addgene-full", "addgene_id": "81701", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -49440,7 +52244,10 @@ "plasmid_name": "pMMLV-EGFP-P2A-Puro", "sequence-type": "addgene-full", "addgene_id": "160226", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.07.009", + "https://www.ncbi.nlm.nih.gov/pubmed/34352222" + ], "kit": null, "att_sites": [ "attB1", @@ -49477,7 +52284,10 @@ "plasmid_name": "pDR FLIP43 GPS1", "sequence-type": "addgene-full", "addgene_id": "101084", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-017-0021-9", + "https://www.ncbi.nlm.nih.gov/pubmed/28970478" + ], "kit": null, "att_sites": [ "attB1", @@ -49525,7 +52335,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 M_nostop", "sequence-type": "addgene-full", "addgene_id": "149322", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -49548,7 +52361,9 @@ "plasmid_name": "pDRFLIP38", "sequence-type": "depositor-full", "addgene_id": "65516", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -49599,7 +52414,10 @@ "plasmid_name": "pSGE_895_Nhe2_EcR-to-gl", "sequence-type": "depositor-full", "addgene_id": "71184", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -49632,7 +52450,10 @@ "plasmid_name": "CMYA5/pDEST17", "sequence-type": "addgene-full", "addgene_id": "98115", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "att_sites": [ "attB1", @@ -49668,7 +52489,6 @@ "plasmid_name": "R777-E102 Hs.HRAS-nostop", "sequence-type": "depositor-full", "addgene_id": "70386", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -49697,7 +52517,10 @@ "plasmid_name": "pCR8_TtNAM-B1", "sequence-type": "addgene-full", "addgene_id": "124575", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "att_sites": [ "attL1", @@ -49726,7 +52549,10 @@ "plasmid_name": "pDONR223_ETFB_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82987", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -49755,7 +52581,10 @@ "plasmid_name": "IQ013: pMVP/Ad-DEST", "sequence-type": "addgene-full", "addgene_id": "121843", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -49787,7 +52616,10 @@ "plasmid_name": "TFORF2971", "sequence-type": "addgene-full", "addgene_id": "144447", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -49847,7 +52679,10 @@ "plasmid_name": "pCLXEBR-pTF-mBmi1", "sequence-type": "addgene-full", "addgene_id": "114317", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-125-7_25", + "https://www.ncbi.nlm.nih.gov/pubmed/23097121" + ], "kit": null, "att_sites": [ "attB1", @@ -49900,7 +52735,10 @@ "plasmid_name": "pEF5B-FRT-AP-Sstr3-GFP-DEST", "sequence-type": "depositor-full", "addgene_id": "49098", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.00654", + "https://www.ncbi.nlm.nih.gov/pubmed/23930224" + ], "kit": null, "att_sites": [ "attB1", @@ -49949,7 +52787,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12A", "sequence-type": "addgene-full", "addgene_id": "81673", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -49983,7 +52824,10 @@ "plasmid_name": "5'-3xFLAG GFP minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212086", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -50027,7 +52871,10 @@ "plasmid_name": "pDONR223_PIK3R4_p.R998Q", "sequence-type": "addgene-full", "addgene_id": "81593", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -50059,7 +52906,10 @@ "plasmid_name": "pEBTet-SNAP-Cep97", "sequence-type": "addgene-full", "addgene_id": "136800", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -50106,7 +52956,10 @@ "plasmid_name": "p5E-161K enhancer-NR2F2-MUT", "sequence-type": "addgene-full", "addgene_id": "138371", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attL4", @@ -50137,7 +52990,10 @@ "plasmid_name": "p3E-rab25b", "sequence-type": "addgene-full", "addgene_id": "109683", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -50168,7 +53024,10 @@ "plasmid_name": "pcDNA3.2/EV", "sequence-type": "addgene-full", "addgene_id": "120833", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -50218,7 +53077,10 @@ "plasmid_name": "pDONR221_MFSD13A", "sequence-type": "addgene-full", "addgene_id": "131952", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -50249,7 +53111,9 @@ "plasmid_name": "p3E-P2A-CFP no-pA", "sequence-type": "depositor-full", "addgene_id": "80827", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -50287,7 +53151,10 @@ "plasmid_name": "pHAGE-ERBB2-D769H", "sequence-type": "addgene-full", "addgene_id": "116327", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -50337,7 +53204,10 @@ "plasmid_name": "pQLinkHD_EBFP2-LSSmOrange", "sequence-type": "addgene-full", "addgene_id": "118856", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "att_sites": [ "attB1", @@ -50377,7 +53247,10 @@ "plasmid_name": "TFORF3337", "sequence-type": "addgene-full", "addgene_id": "144813", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -50437,7 +53310,10 @@ "plasmid_name": "JDW 770 (pTol2-kdrl:EGFP-hsKRAS4B-G12V-ac/Y)", "sequence-type": "addgene-full", "addgene_id": "156414", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -50481,7 +53357,10 @@ "plasmid_name": "pSLIK 3xFLAG-CSE1L neo", "sequence-type": "addgene-full", "addgene_id": "192341", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -50549,7 +53428,10 @@ "plasmid_name": "pLEX307-mFzd8", "sequence-type": "depositor-full", "addgene_id": "102870", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "att_sites": [ "attB1", @@ -50606,7 +53488,10 @@ "plasmid_name": "actc1b-mKate2-rab28", "sequence-type": "addgene-full", "addgene_id": "109618", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -50648,7 +53533,10 @@ "plasmid_name": "pDON207 NSP3 A890D", "sequence-type": "addgene-full", "addgene_id": "180069", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -50672,7 +53560,10 @@ "plasmid_name": "TFORF3412", "sequence-type": "addgene-full", "addgene_id": "144888", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -50732,7 +53623,10 @@ "plasmid_name": "pAG303GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14205", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -50744,7 +53638,6 @@ "plasmid_name": "pEF 1-SAG12-4", "sequence-type": "depositor-full", "addgene_id": "20092", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -50775,7 +53668,10 @@ "plasmid_name": "pDONR223_THEMIS_p.P216S", "sequence-type": "addgene-full", "addgene_id": "81508", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -50807,7 +53703,9 @@ "plasmid_name": "pMpGWB334", "sequence-type": "depositor-full", "addgene_id": "68662", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -50853,7 +53751,10 @@ "plasmid_name": "pDONR223_SERPINB5_p.A165T", "sequence-type": "addgene-full", "addgene_id": "82741", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -50885,7 +53786,10 @@ "plasmid_name": "pDONR221 CARD8 PAM E274R", "sequence-type": "addgene-full", "addgene_id": "169977", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -50916,7 +53820,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-N", "sequence-type": "addgene-full", "addgene_id": "154424", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -50947,7 +53854,10 @@ "plasmid_name": "pDONR223_FGFR3_p.R399H", "sequence-type": "addgene-full", "addgene_id": "82921", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82921.addgene-full.gb" }, @@ -50956,7 +53866,10 @@ "plasmid_name": "R620-M14-303: CMV51p> SARS-CoV-2 S(1-1213)-2P-T4f-His6 B.1.351", "sequence-type": "addgene-full", "addgene_id": "170198", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -51011,7 +53924,10 @@ "plasmid_name": "IX601: pMVP (L3-L2) FLAG epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121751", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -51045,7 +53961,10 @@ "plasmid_name": "pEN_TT 3xFLAG-CSE1L", "sequence-type": "addgene-full", "addgene_id": "192295", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -51074,7 +53993,10 @@ "plasmid_name": "pMpGWB102-Citrine-PTS1", "sequence-type": "depositor-full", "addgene_id": "44592", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "att_sites": [ "attB1", @@ -51119,7 +54041,10 @@ "plasmid_name": "pGL3-DSCP-Gateway", "sequence-type": "depositor-full", "addgene_id": "71507", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13994", + "https://www.ncbi.nlm.nih.gov/pubmed/25517091" + ], "kit": null, "att_sites": [ "attR1", @@ -51157,7 +54082,10 @@ "plasmid_name": "pHAGE-EGFR-L747_P753delinsS", "sequence-type": "addgene-full", "addgene_id": "116268", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -51211,7 +54139,6 @@ "plasmid_name": "His SUMO TEV E47K SPOP 1-374", "sequence-type": "addgene-full", "addgene_id": "197017", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -51251,7 +54178,10 @@ "plasmid_name": "pHAGE-BRAF-N581S", "sequence-type": "addgene-full", "addgene_id": "116188", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -51306,7 +54236,10 @@ "plasmid_name": "TFORF3032", "sequence-type": "addgene-full", "addgene_id": "144508", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -51366,7 +54299,10 @@ "plasmid_name": "pLEX307-SARS-CoV-3CL", "sequence-type": "addgene-full", "addgene_id": "160280", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -51426,7 +54362,10 @@ "plasmid_name": "pLSLT", "sequence-type": "depositor-full", "addgene_id": "51498", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attB1", @@ -51479,7 +54418,10 @@ "plasmid_name": "pTKan-p35S::Csy4-pC4H::cogRFP (C90, JBEI-15908)", "sequence-type": "addgene-full", "addgene_id": "110143", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.6b00295", + "https://www.ncbi.nlm.nih.gov/pubmed/28094975" + ], "kit": null, "att_sites": [ "attB1", @@ -51534,7 +54476,10 @@ "plasmid_name": "pENTR-Rabin8", "sequence-type": "depositor-full", "addgene_id": "24910", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.053", + "https://www.ncbi.nlm.nih.gov/pubmed/17574030" + ], "kit": null, "att_sites": [ "attL1", @@ -51565,7 +54510,10 @@ "plasmid_name": "pJOG267", "sequence-type": "addgene-full", "addgene_id": "105339", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -51595,7 +54543,10 @@ "plasmid_name": "pInducer20-iCreb5(T59/T61A)(HA)", "sequence-type": "addgene-full", "addgene_id": "195027", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "att_sites": [ "attB1", @@ -51647,7 +54598,10 @@ "plasmid_name": "A1-LCD+12E", "sequence-type": "addgene-full", "addgene_id": "178676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -51682,7 +54636,10 @@ "plasmid_name": "A1-LCD Aro+", "sequence-type": "addgene-full", "addgene_id": "169717", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "att_sites": [ "attB1", @@ -51717,7 +54674,10 @@ "plasmid_name": "pDONR221-SLC39A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161319", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -51748,7 +54708,10 @@ "plasmid_name": "pDONR223_ADORA2A_WT", "sequence-type": "addgene-full", "addgene_id": "81888", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -51780,7 +54743,9 @@ "plasmid_name": "pPB-cT3G-cERP2-HOXA10", "sequence-type": "addgene-full", "addgene_id": "222539", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -51826,7 +54791,10 @@ "plasmid_name": "pDONR221-RAP1", "sequence-type": "addgene-full", "addgene_id": "84525", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.185793.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25800674" + ], "kit": null, "att_sites": [ "attL1", @@ -51855,7 +54823,10 @@ "plasmid_name": "pDONR223_OTUD6A_WT", "sequence-type": "addgene-full", "addgene_id": "81813", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -51887,7 +54858,10 @@ "plasmid_name": "pHAGE-ARAF-P216L", "sequence-type": "addgene-full", "addgene_id": "116113", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -51941,7 +54915,10 @@ "plasmid_name": "TFORF3117", "sequence-type": "addgene-full", "addgene_id": "144593", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -52001,7 +54978,10 @@ "plasmid_name": "pMOS017: ratiometric pHluorin (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163052", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -52063,7 +55043,10 @@ "plasmid_name": "TFORF3197", "sequence-type": "addgene-full", "addgene_id": "144673", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -52123,7 +55106,10 @@ "plasmid_name": "p3E-Rab38b", "sequence-type": "addgene-full", "addgene_id": "109757", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -52154,7 +55140,10 @@ "plasmid_name": "pDONR221_SLC15A2", "sequence-type": "addgene-full", "addgene_id": "131886", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -52185,7 +55174,10 @@ "plasmid_name": "pJA269", "sequence-type": "depositor-full", "addgene_id": "21544", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "att_sites": [ "attL4", @@ -52218,7 +55210,10 @@ "plasmid_name": "pDONR223_ACVR1B_p.E412D", "sequence-type": "addgene-full", "addgene_id": "81447", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -52250,7 +55245,10 @@ "plasmid_name": "pLX-EF1a_NKX2-4", "sequence-type": "addgene-full", "addgene_id": "221490", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -52310,7 +55308,6 @@ "plasmid_name": "CMYA5tnC/pENTR3C", "sequence-type": "addgene-full", "addgene_id": "98128", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -52334,7 +55331,10 @@ "plasmid_name": "pHAGE-BRAF-D594H", "sequence-type": "addgene-full", "addgene_id": "116137", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -52389,7 +55389,10 @@ "plasmid_name": "pDEST-ORF-V2", "sequence-type": "depositor-full", "addgene_id": "73638", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaf0793", + "https://www.ncbi.nlm.nih.gov/pubmed/27405979" + ], "kit": null, "att_sites": [ "attR1", @@ -52425,7 +55428,10 @@ "plasmid_name": "actc1b-Lifeact-mKate2", "sequence-type": "addgene-full", "addgene_id": "109493", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109493.addgene-full.gb" }, @@ -52434,7 +55440,10 @@ "plasmid_name": "pMOS015E: Entry vector for: mito-roGFP2-Orp1 H2O2 oxidation sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163076", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -52470,7 +55479,10 @@ "plasmid_name": "pLenti-pHluorin_M153R-CD63", "sequence-type": "addgene-full", "addgene_id": "172117", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-15747-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32350252" + ], "kit": null, "att_sites": [ "attB1", @@ -52534,7 +55546,10 @@ "plasmid_name": "pDONR223_WBSCR17_WT", "sequence-type": "addgene-full", "addgene_id": "81837", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -52546,7 +55561,10 @@ "plasmid_name": "pDONR221-DIRC2_STOP", "sequence-type": "addgene-full", "addgene_id": "161046", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -52577,7 +55595,10 @@ "plasmid_name": "pENTR U6-hTERTsh", "sequence-type": "addgene-full", "addgene_id": "111385", - "references": [], + "references": [ + "https://doi.org/10.3390/genes7080046", + "https://www.ncbi.nlm.nih.gov/pubmed/27537914" + ], "kit": null, "att_sites": [ "attL1", @@ -52611,7 +55632,9 @@ "plasmid_name": "pMpGWB113", "sequence-type": "depositor-full", "addgene_id": "68567", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -52657,7 +55680,10 @@ "plasmid_name": "pDONR223_CHD2_p.P195L", "sequence-type": "addgene-full", "addgene_id": "81463", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -52689,7 +55715,10 @@ "plasmid_name": "TFORF3181", "sequence-type": "addgene-full", "addgene_id": "144657", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -52750,7 +55779,6 @@ "plasmid_name": "Hs.KRAS4b", "sequence-type": "depositor-full", "addgene_id": "83129", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -52779,7 +55807,10 @@ "plasmid_name": "pAFMW-Nbr[K276A]", "sequence-type": "addgene-full", "addgene_id": "188597", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -52809,7 +55840,10 @@ "plasmid_name": "pER8 cHA-FG1", "sequence-type": "addgene-full", "addgene_id": "118689", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -52848,7 +55882,10 @@ "plasmid_name": "pSAM2_mCherry_Gata6", "sequence-type": "addgene-full", "addgene_id": "72694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -52911,7 +55948,10 @@ "plasmid_name": "TFORF3502", "sequence-type": "addgene-full", "addgene_id": "144978", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144978.addgene-full.gb" }, @@ -52920,7 +55960,10 @@ "plasmid_name": "pCMB-ACTFr", "sequence-type": "depositor-full", "addgene_id": "61192", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -52966,7 +56009,10 @@ "plasmid_name": "pDONR223_ERBB2_p.D845A", "sequence-type": "addgene-full", "addgene_id": "82905", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -52995,7 +56041,10 @@ "plasmid_name": "LD101: pMVP (L3-L2) eCFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121775", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -53033,7 +56082,10 @@ "plasmid_name": "pLX304-DCK*-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176297", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "att_sites": [ "attB1", @@ -53099,7 +56151,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.T257I", "sequence-type": "addgene-full", "addgene_id": "81718", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -53132,7 +56187,10 @@ "plasmid_name": "pDONR221-SLC10A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161109", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -53163,7 +56221,10 @@ "plasmid_name": "pEntr-Nkx2-5flbio", "sequence-type": "depositor-full", "addgene_id": "32969", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1016959108", + "https://www.ncbi.nlm.nih.gov/pubmed/21415370" + ], "kit": null, "att_sites": [ "attL1", @@ -53189,7 +56250,10 @@ "plasmid_name": "pDONR223_STK11_p.G251V", "sequence-type": "addgene-full", "addgene_id": "82765", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -53218,7 +56282,10 @@ "plasmid_name": "tetO-GATA4", "sequence-type": "addgene-full", "addgene_id": "46030", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "att_sites": [ "attB1", @@ -53280,7 +56347,10 @@ "plasmid_name": "pENTR-BIF4", "sequence-type": "addgene-full", "addgene_id": "188443", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -53311,7 +56381,10 @@ "plasmid_name": "TFORF3242", "sequence-type": "addgene-full", "addgene_id": "144718", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -53371,7 +56444,10 @@ "plasmid_name": "pCM5.42", "sequence-type": "depositor-full", "addgene_id": "19390", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -53402,7 +56478,10 @@ "plasmid_name": "pHAGE-FLT1-T777I", "sequence-type": "addgene-full", "addgene_id": "116398", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -53452,7 +56531,10 @@ "plasmid_name": "pBullet-end-n", "sequence-type": "depositor-full", "addgene_id": "53073", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -53489,7 +56571,10 @@ "plasmid_name": "pENT-L3-a-element-L4", "sequence-type": "addgene-full", "addgene_id": "186366", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL3", @@ -53520,7 +56605,6 @@ "plasmid_name": "V5-W279A-long-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192085", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -53571,7 +56655,10 @@ "plasmid_name": "MAC_C_CCDC22", "sequence-type": "addgene-full", "addgene_id": "209686", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -53616,7 +56703,6 @@ "plasmid_name": "Hs.KRAS4a G12C", "sequence-type": "depositor-full", "addgene_id": "83167", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -53641,7 +56727,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP1", "sequence-type": "addgene-full", "addgene_id": "154400", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154400.addgene-full.gb" }, @@ -53650,7 +56739,6 @@ "plasmid_name": "p667-UBC-COQ8B-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189915", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -53715,7 +56803,10 @@ "plasmid_name": "pDONR223_NRAS_p.Q61K", "sequence-type": "addgene-full", "addgene_id": "81657", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -53747,7 +56838,10 @@ "plasmid_name": "GALE_pLX307", "sequence-type": "addgene-full", "addgene_id": "98338", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -53807,7 +56901,10 @@ "plasmid_name": "pENTR/pSUPER+ (575-1)", "sequence-type": "depositor-full", "addgene_id": "17338", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -53835,7 +56932,10 @@ "plasmid_name": "AdMKP-3 S197A", "sequence-type": "addgene-full", "addgene_id": "131522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mce.2012.03.025", + "https://www.ncbi.nlm.nih.gov/pubmed/22521266" + ], "kit": null, "att_sites": [ "attB1", @@ -53871,7 +56971,10 @@ "plasmid_name": "pME-nCas9n-P2A-mKate2-pA", "sequence-type": "addgene-full", "addgene_id": "109547", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -53910,7 +57013,10 @@ "plasmid_name": "TFORF2987", "sequence-type": "addgene-full", "addgene_id": "144463", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -53970,7 +57076,10 @@ "plasmid_name": "DDX11", "sequence-type": "addgene-full", "addgene_id": "155502", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -54014,7 +57123,10 @@ "plasmid_name": "pDONR221_SLC22A20P", "sequence-type": "addgene-full", "addgene_id": "131976", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -54046,7 +57158,10 @@ "plasmid_name": "pcDNA3.2/pr-Membrane", "sequence-type": "addgene-full", "addgene_id": "120817", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -54096,7 +57211,10 @@ "plasmid_name": "TFORF3307", "sequence-type": "addgene-full", "addgene_id": "144783", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -54156,7 +57274,10 @@ "plasmid_name": "pHAGE-EGFR-S492R", "sequence-type": "addgene-full", "addgene_id": "116303", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -54210,7 +57331,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hSFRP1", "sequence-type": "addgene-full", "addgene_id": "189541", - "references": [], "kit": null, "file": "data/addgene_plasmids/189541.addgene-full.gb" }, @@ -54219,7 +57339,9 @@ "plasmid_name": "pGem-nHyPer:sAPX", "sequence-type": "addgene-full", "addgene_id": "84735", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "att_sites": [ "attB1", @@ -54264,7 +57386,10 @@ "plasmid_name": "pEBTetD-SNAP-HsSAS6", "sequence-type": "addgene-full", "addgene_id": "136790", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -54309,7 +57434,10 @@ "plasmid_name": "pMuLE ENTR CMV iRFP L5-L2", "sequence-type": "depositor-full", "addgene_id": "62157", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -54344,7 +57472,10 @@ "plasmid_name": "pPB-EF1a-MegaGate-DD-Blast", "sequence-type": "addgene-full", "addgene_id": "175271", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -54394,7 +57525,10 @@ "plasmid_name": "pME-luc2", "sequence-type": "addgene-full", "addgene_id": "138355", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attL1", @@ -54427,7 +57561,10 @@ "plasmid_name": "pEBTet-SNAP-Cep164", "sequence-type": "addgene-full", "addgene_id": "136824", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -54474,7 +57611,6 @@ "plasmid_name": "p42Neo 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58558", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -54531,7 +57667,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP3_nostop", "sequence-type": "addgene-full", "addgene_id": "149306", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -54555,7 +57694,10 @@ "plasmid_name": "p6329 pHAGE-P-CMVt-N-HA-GAW-HERC2-F5", "sequence-type": "addgene-full", "addgene_id": "100139", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -54607,7 +57749,10 @@ "plasmid_name": "pLX302-NIPP1-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87775", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "att_sites": [ "attB1", @@ -54668,7 +57813,10 @@ "plasmid_name": "PP7_mCherry", "sequence-type": "addgene-full", "addgene_id": "61763", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.03939", + "https://www.ncbi.nlm.nih.gov/pubmed/25271374" + ], "kit": null, "att_sites": [ "attB1", @@ -54709,7 +57857,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_HD_160-223AA", "sequence-type": "addgene-full", "addgene_id": "221489", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -54769,7 +57920,6 @@ "plasmid_name": "CMYA5tnT/pDEST26-N-FLAG", "sequence-type": "addgene-full", "addgene_id": "98131", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -54816,7 +57966,10 @@ "plasmid_name": "KK001: pMVP/SB/Hygro-DEST", "sequence-type": "addgene-full", "addgene_id": "121867", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -54857,7 +58010,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-ICK_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158187", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -54924,7 +58076,10 @@ "plasmid_name": "pENTR D-TOPO-C3_32", "sequence-type": "depositor-full", "addgene_id": "60274", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -54955,7 +58110,10 @@ "plasmid_name": "pHAGE-EGFR-L747S", "sequence-type": "addgene-full", "addgene_id": "116271", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -55009,7 +58167,10 @@ "plasmid_name": "TFORF3469", "sequence-type": "addgene-full", "addgene_id": "144945", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -55069,7 +58230,10 @@ "plasmid_name": "IX702: pMVP (L3-L2) OLLAS-IRES-eGFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121748", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -55111,7 +58275,10 @@ "plasmid_name": "pDONR221-eGFP_myr", "sequence-type": "addgene-full", "addgene_id": "221412", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -55146,7 +58313,10 @@ "plasmid_name": "pLenti CMV/TO Neo DEST (685-3)", "sequence-type": "depositor-full", "addgene_id": "17292", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -55212,7 +58382,10 @@ "plasmid_name": "pDONR223_PCCB_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82938", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82938.addgene-full.gb" }, @@ -55221,7 +58394,10 @@ "plasmid_name": "pDONR221-SLC35D1_STOP", "sequence-type": "addgene-full", "addgene_id": "161300", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -55252,7 +58428,10 @@ "plasmid_name": "pDONR223_KPNA3_WT", "sequence-type": "addgene-full", "addgene_id": "81891", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -55284,7 +58463,10 @@ "plasmid_name": "pAG416GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14219", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -55346,7 +58528,10 @@ "plasmid_name": "TFORF3035", "sequence-type": "addgene-full", "addgene_id": "144511", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -55406,7 +58591,10 @@ "plasmid_name": "pG3H-PE3max-attR1R2", "sequence-type": "addgene-full", "addgene_id": "213049", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100741", + "https://www.ncbi.nlm.nih.gov/pubmed/37897041" + ], "kit": null, "att_sites": [ "attB2", @@ -55452,7 +58640,10 @@ "plasmid_name": "pHAGE-BRAF-P731S", "sequence-type": "addgene-full", "addgene_id": "116191", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -55507,7 +58698,10 @@ "plasmid_name": "pDONR223_NFE2L2_p.T80K", "sequence-type": "addgene-full", "addgene_id": "81511", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -55539,7 +58733,10 @@ "plasmid_name": "pDONR223 ATG3 WT", "sequence-type": "addgene-full", "addgene_id": "129292", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attL1", @@ -55568,7 +58765,10 @@ "plasmid_name": "pDONR223_RBM45_p.D434Y", "sequence-type": "addgene-full", "addgene_id": "82758", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -55597,7 +58797,10 @@ "plasmid_name": "Hsp70-mplum", "sequence-type": "depositor-full", "addgene_id": "45016", - "references": [], + "references": [ + "https://doi.org/10.1007/s00259-012-2277-7", + "https://www.ncbi.nlm.nih.gov/pubmed/23135322" + ], "kit": null, "att_sites": [ "attB2", @@ -55636,7 +58839,10 @@ "plasmid_name": "dg264_pENTR_ChronosCel", "sequence-type": "depositor-full", "addgene_id": "66102", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.177956", + "https://www.ncbi.nlm.nih.gov/pubmed/26022242" + ], "kit": null, "att_sites": [ "attL1", @@ -55670,7 +58876,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-4", "sequence-type": "depositor-full", "addgene_id": "46707", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -55720,7 +58929,10 @@ "plasmid_name": "TFORF3415", "sequence-type": "addgene-full", "addgene_id": "144891", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -55780,7 +58992,10 @@ "plasmid_name": "TFORF3249", "sequence-type": "addgene-full", "addgene_id": "144725", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -55840,7 +59055,10 @@ "plasmid_name": "pDON223 Spike L241-L242-A243-", "sequence-type": "addgene-full", "addgene_id": "180070", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -55869,7 +59087,10 @@ "plasmid_name": "actc1b-mKate2-rab14l", "sequence-type": "addgene-full", "addgene_id": "109601", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -55911,7 +59132,10 @@ "plasmid_name": "pME eos", "sequence-type": "depositor-full", "addgene_id": "73792", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.072439", + "https://www.ncbi.nlm.nih.gov/pubmed/22296847" + ], "kit": null, "att_sites": [ "attL1", @@ -55943,7 +59167,10 @@ "plasmid_name": "pDEST_5xUAS:EB3-mScarlet-I", "sequence-type": "addgene-full", "addgene_id": "192358", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.82094", + "https://www.ncbi.nlm.nih.gov/pubmed/36398880" + ], "kit": null, "att_sites": [ "attB1", @@ -55992,7 +59219,10 @@ "plasmid_name": "p21-S208C/S242R/M694V-MEFV", "sequence-type": "addgene-full", "addgene_id": "134706", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "att_sites": [ "attB1", @@ -56049,7 +59279,6 @@ "plasmid_name": "pCW57.1_V5_TurboID_FLAG_Ct", "sequence-type": "addgene-full", "addgene_id": "194073", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -56106,7 +59335,10 @@ "plasmid_name": "pKG-GW2-NgBR", "sequence-type": "addgene-full", "addgene_id": "203165", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "att_sites": [ "attB1", @@ -56137,7 +59369,10 @@ "plasmid_name": "pAB(EXPR-PYL-HDAC5-NEO)", "sequence-type": "addgene-full", "addgene_id": "114395", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "att_sites": [ "attB1", @@ -56191,7 +59426,10 @@ "plasmid_name": "pLenti6/V5-DEST-FASCIN", "sequence-type": "addgene-full", "addgene_id": "31207", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccr.2011.05.025", + "https://www.ncbi.nlm.nih.gov/pubmed/21741599" + ], "kit": null, "att_sites": [ "attB1", @@ -56248,7 +59486,10 @@ "plasmid_name": "pAG305GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14257", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -56305,7 +59546,10 @@ "plasmid_name": "pLenti-161K enhancer-NR2F2-MUT-minP:fLuc-TK:rLuc", "sequence-type": "addgene-full", "addgene_id": "138368", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attB1", @@ -56367,7 +59611,10 @@ "plasmid_name": "pEBTet-SNAP-Cep72", "sequence-type": "addgene-full", "addgene_id": "136819", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -56414,7 +59661,9 @@ "plasmid_name": "pMpGWB302", "sequence-type": "depositor-full", "addgene_id": "68630", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -56460,7 +59709,10 @@ "plasmid_name": "pSMAL", "sequence-type": "addgene-full", "addgene_id": "161785", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2013.11.021", + "https://www.ncbi.nlm.nih.gov/pubmed/24388174" + ], "kit": null, "att_sites": [ "attR1", @@ -56524,7 +59776,10 @@ "plasmid_name": "pCFJ2452 - [1-2] ENTR - Fluor - ce-mNeon(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159854", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159854.addgene-full.gb" }, @@ -56533,7 +59788,10 @@ "plasmid_name": "MAC_C_TYRO3", "sequence-type": "addgene-full", "addgene_id": "187793", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -56578,7 +59836,10 @@ "plasmid_name": "pDestTol2CG2--3.5ubb:plin2-tdtomato", "sequence-type": "addgene-full", "addgene_id": "172534", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64744", + "https://www.ncbi.nlm.nih.gov/pubmed/34114952" + ], "kit": null, "att_sites": [ "attB1", @@ -56621,7 +59882,10 @@ "plasmid_name": "pHAGE-PIK3CA-N1044K", "sequence-type": "addgene-full", "addgene_id": "116514", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -56671,7 +59935,6 @@ "plasmid_name": "pREP81xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79025", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -56717,7 +59980,6 @@ "plasmid_name": "His8:MBP-tev-Trp-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83390", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -56756,7 +60018,10 @@ "plasmid_name": "GFP-GCN5", "sequence-type": "addgene-full", "addgene_id": "65386", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -56808,7 +60073,10 @@ "plasmid_name": "pDONR221-ZNF275", "sequence-type": "depositor-full", "addgene_id": "101487", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -56839,7 +60107,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113476", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -56883,7 +60154,10 @@ "plasmid_name": "pDONR223_ETV1_WT", "sequence-type": "addgene-full", "addgene_id": "82209", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -56912,7 +60186,10 @@ "plasmid_name": "p5Edll4E2", "sequence-type": "addgene-full", "addgene_id": "90121", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -56943,7 +60220,10 @@ "plasmid_name": "PB-Sox17", "sequence-type": "depositor-full", "addgene_id": "60669", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "att_sites": [ "attB1", @@ -56983,7 +60263,10 @@ "plasmid_name": "pDONR221-SLC25A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161465", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -57014,7 +60297,10 @@ "plasmid_name": "pDONR223_NOTCH2_WT", "sequence-type": "addgene-full", "addgene_id": "82292", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -57044,7 +60330,10 @@ "plasmid_name": "C232-E06: attB2r-mCherry-attB3", "sequence-type": "addgene-full", "addgene_id": "162903", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -57075,7 +60364,10 @@ "plasmid_name": "pDEST-HisMBP-SED1", "sequence-type": "addgene-full", "addgene_id": "178191", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-25736-8", + "https://www.ncbi.nlm.nih.gov/pubmed/34521831" + ], "kit": null, "att_sites": [ "attB1", @@ -57121,7 +60413,10 @@ "plasmid_name": "pAG416GAL-ccdB", "sequence-type": "addgene-full", "addgene_id": "14147", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -57182,7 +60477,10 @@ "plasmid_name": "pDONR223 GABARAPL2 WT", "sequence-type": "addgene-full", "addgene_id": "123086", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -57211,7 +60509,10 @@ "plasmid_name": "pPB-cT3G-cERP2-RUNX2", "sequence-type": "addgene-full", "addgene_id": "192926", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -57257,7 +60558,10 @@ "plasmid_name": "pENTR/pTER shLUC (w177-1)", "sequence-type": "depositor-full", "addgene_id": "17472", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -57283,7 +60587,10 @@ "plasmid_name": "pCAB1-GW", "sequence-type": "addgene-full", "addgene_id": "209371", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -57323,7 +60630,10 @@ "plasmid_name": "pDONR221_SLC6A17", "sequence-type": "addgene-full", "addgene_id": "132207", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -57354,7 +60664,10 @@ "plasmid_name": "pQFD", "sequence-type": "depositor-full", "addgene_id": "48101", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.02296-13", + "https://www.ncbi.nlm.nih.gov/pubmed/23995928" + ], "kit": null, "file": "data/addgene_plasmids/48101.depositor-full.gb" }, @@ -57363,7 +60676,10 @@ "plasmid_name": "pAG416GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14363", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -57423,7 +60739,10 @@ "plasmid_name": "Flag-HA-USPL1", "sequence-type": "addgene-full", "addgene_id": "22607", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -57472,7 +60791,10 @@ "plasmid_name": "pDONR223_AKT3_p.E17K", "sequence-type": "addgene-full", "addgene_id": "82172", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -57501,7 +60823,10 @@ "plasmid_name": "pCPP5233", "sequence-type": "addgene-full", "addgene_id": "128715", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000388", + "https://www.ncbi.nlm.nih.gov/pubmed/19381254" + ], "kit": null, "att_sites": [ "attL1", @@ -57532,7 +60857,10 @@ "plasmid_name": "pDONR221-MFSD6L_STOP", "sequence-type": "depositor-full", "addgene_id": "161036", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -57563,7 +60891,10 @@ "plasmid_name": "pDONR221_SLC19A2", "sequence-type": "addgene-full", "addgene_id": "132033", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -57594,7 +60925,6 @@ "plasmid_name": "pDONR221-appb", "sequence-type": "addgene-full", "addgene_id": "192746", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -57625,7 +60955,10 @@ "plasmid_name": "pENTR-Mm_MyoGEF(T575A)", "sequence-type": "addgene-full", "addgene_id": "136328", - "references": [], + "references": [ + "https://doi.org/10.1038/nm.4364", + "https://www.ncbi.nlm.nih.gov/pubmed/28692064" + ], "kit": null, "att_sites": [ "attL1", @@ -57656,7 +60989,6 @@ "plasmid_name": "pHAGE-CMV-Flag-CDK12_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135281", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -57709,7 +61041,10 @@ "plasmid_name": "PLX_307 FDX1", "sequence-type": "addgene-full", "addgene_id": "184495", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abf0529", + "https://www.ncbi.nlm.nih.gov/pubmed/35298263" + ], "kit": null, "att_sites": [ "attB1", @@ -57769,7 +61104,9 @@ "plasmid_name": "pCW57.1-FOXM1b", "sequence-type": "addgene-full", "addgene_id": "68811", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26243836" + ], "kit": null, "att_sites": [ "attB1", @@ -57824,7 +61161,6 @@ "plasmid_name": "pCDNA3-hDHX58-VenusFlag", "sequence-type": "addgene-full", "addgene_id": "197624", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -57878,7 +61214,10 @@ "plasmid_name": "pK7WG2-mitoTAL1-orf125", "sequence-type": "addgene-full", "addgene_id": "158736", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-019-0459-z", + "https://www.ncbi.nlm.nih.gov/pubmed/31285556" + ], "kit": null, "att_sites": [ "attB1", @@ -57921,7 +61260,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP5", "sequence-type": "addgene-full", "addgene_id": "141259", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141259.addgene-full.gb" }, @@ -57930,7 +61272,10 @@ "plasmid_name": "pTol2CG2-acta1:QFGal4-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155121", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "att_sites": [ "attB1", @@ -57975,7 +61320,6 @@ "plasmid_name": "IDG_CACNG7_OE_1", "sequence-type": "addgene-full", "addgene_id": "161651", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -58034,7 +61378,10 @@ "plasmid_name": "pSLIKneo 3XFLAG-S37A-GATA6-3XAU1_RNAi resistant", "sequence-type": "depositor-full", "addgene_id": "72617", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "att_sites": [ "attB1", @@ -58102,7 +61449,10 @@ "plasmid_name": "TFORF3542", "sequence-type": "depositor-full", "addgene_id": "145018", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -58162,7 +61512,6 @@ "plasmid_name": "R777-E020 Hs.CCND2-nostop", "sequence-type": "depositor-full", "addgene_id": "70304", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -58190,7 +61539,10 @@ "plasmid_name": "pDONR223_B2M_p.M1L", "sequence-type": "addgene-full", "addgene_id": "81274", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -58222,7 +61574,10 @@ "plasmid_name": "MAC_C_PDK1", "sequence-type": "addgene-full", "addgene_id": "111672", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -58267,7 +61622,10 @@ "plasmid_name": "pGWT35S-KON154-MXMT", "sequence-type": "addgene-full", "addgene_id": "182725", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "att_sites": [ "attB1", @@ -58309,7 +61667,10 @@ "plasmid_name": "pHAGE-CCDC28A", "sequence-type": "addgene-full", "addgene_id": "116720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -58359,7 +61720,10 @@ "plasmid_name": "pGWB453", "sequence-type": "depositor-full", "addgene_id": "74835", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -58409,7 +61773,10 @@ "plasmid_name": "MAC_N_KLF8", "sequence-type": "addgene-full", "addgene_id": "167773", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -58454,7 +61821,10 @@ "plasmid_name": "pDEST40-MCU-V5-HIS", "sequence-type": "depositor-full", "addgene_id": "31731", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "att_sites": [ "attB1", @@ -58505,7 +61875,10 @@ "plasmid_name": "pCFJ2300 - [1-2] ENTR - Fluor - ce-Dendra2(1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159869", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -58538,7 +61911,10 @@ "plasmid_name": "pHAGE-PIK3CA-Q546P", "sequence-type": "addgene-full", "addgene_id": "116529", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -58593,7 +61969,6 @@ "plasmid_name": "pDD362", "sequence-type": "addgene-full", "addgene_id": "137023", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -58624,7 +61999,10 @@ "plasmid_name": "p5E_(-3kb)nrg1 type II", "sequence-type": "addgene-full", "addgene_id": "199393", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "att_sites": [ "attL4", @@ -58655,7 +62033,10 @@ "plasmid_name": "pAC84-pCR8-dCas9", "sequence-type": "depositor-full", "addgene_id": "48218", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attL1", @@ -58687,7 +62068,10 @@ "plasmid_name": "pDONR221_SLC39A11", "sequence-type": "addgene-full", "addgene_id": "132141", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -58718,7 +62102,6 @@ "plasmid_name": "MECP2 - R91W in pENTR", "sequence-type": "addgene-full", "addgene_id": "216593", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -58748,7 +62131,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(WT)--IRES-hyg", "sequence-type": "addgene-full", "addgene_id": "128667", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -58796,7 +62182,10 @@ "plasmid_name": "pDONR221-SFXN5_STOP", "sequence-type": "addgene-full", "addgene_id": "161458", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -58827,7 +62216,10 @@ "plasmid_name": "Flag-HA-COPS5", "sequence-type": "addgene-full", "addgene_id": "22541", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -58872,7 +62264,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0497-luc2", "sequence-type": "addgene-full", "addgene_id": "214643", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -58916,7 +62311,10 @@ "plasmid_name": "pDONR223_STAT1_WT", "sequence-type": "addgene-full", "addgene_id": "82234", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -58945,7 +62343,10 @@ "plasmid_name": "pDL66", "sequence-type": "addgene-full", "addgene_id": "175894", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -58969,7 +62370,10 @@ "plasmid_name": "pENTR-L3-SpCas9-HF2-2A-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141050", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -58999,7 +62403,6 @@ "plasmid_name": "R777-E250 Hs.RASGRP4-nostop", "sequence-type": "depositor-full", "addgene_id": "70534", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -59027,7 +62430,10 @@ "plasmid_name": "pAG414GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14287", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -59089,7 +62495,10 @@ "plasmid_name": "pDONR221-GATA6", "sequence-type": "addgene-full", "addgene_id": "101418", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -59121,7 +62530,10 @@ "plasmid_name": "pDONR223_RHOA_p.Y42C", "sequence-type": "addgene-full", "addgene_id": "81306", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -59154,7 +62566,10 @@ "plasmid_name": "pDest-312 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161897", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -59203,7 +62618,10 @@ "plasmid_name": "MAC_N_LHX3", "sequence-type": "addgene-full", "addgene_id": "187735", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -59248,7 +62666,10 @@ "plasmid_name": "pLenti-MTS-jAspSnFR3-mRuby3", "sequence-type": "addgene-full", "addgene_id": "203492", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "att_sites": [ "attB1", @@ -59312,7 +62733,10 @@ "plasmid_name": "pHAGE-PRKCE__CAMKMT", "sequence-type": "addgene-full", "addgene_id": "116832", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -59363,7 +62787,10 @@ "plasmid_name": "pCPP5539", "sequence-type": "addgene-full", "addgene_id": "128728", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -59394,7 +62821,10 @@ "plasmid_name": "pHAGE-RCAN2", "sequence-type": "addgene-full", "addgene_id": "116786", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -59444,7 +62874,10 @@ "plasmid_name": "R701-X23-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) Q61L", "sequence-type": "addgene-full", "addgene_id": "159572", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -59492,7 +62925,9 @@ "plasmid_name": "p5E-krt5", "sequence-type": "depositor-full", "addgene_id": "82585", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24643048" + ], "kit": null, "att_sites": [ "attL4", @@ -59525,7 +62960,10 @@ "plasmid_name": "tetO-ALN", "sequence-type": "addgene-full", "addgene_id": "43918", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0028719", + "https://www.ncbi.nlm.nih.gov/pubmed/22174877" + ], "kit": null, "att_sites": [ "attB1", @@ -59590,7 +63028,10 @@ "plasmid_name": "pDONR-IAA27_no stop", "sequence-type": "depositor-full", "addgene_id": "83860", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -59621,7 +63062,10 @@ "plasmid_name": "R989-X79-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) M188L", "sequence-type": "addgene-full", "addgene_id": "159692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2018.06.012", + "https://www.ncbi.nlm.nih.gov/pubmed/29936133" + ], "kit": null, "att_sites": [ "attB1", @@ -59662,7 +63106,10 @@ "plasmid_name": "bactin:mKate2-ras", "sequence-type": "addgene-full", "addgene_id": "105963", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "att_sites": [ "attB1", @@ -59708,7 +63155,10 @@ "plasmid_name": "pME-mVenus-CAAX", "sequence-type": "depositor-full", "addgene_id": "75153", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -59747,7 +63197,10 @@ "plasmid_name": "pHAGE-PIK3CA-E103_P104delEP", "sequence-type": "addgene-full", "addgene_id": "116466", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -59801,7 +63254,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) VOPP1", "sequence-type": "addgene-full", "addgene_id": "107507", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB1", @@ -59863,7 +63319,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP10", "sequence-type": "addgene-full", "addgene_id": "141264", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -59892,7 +63351,10 @@ "plasmid_name": "pACT2-Kre33", "sequence-type": "addgene-full", "addgene_id": "99990", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attB1", @@ -59928,7 +63390,10 @@ "plasmid_name": "pcDNA5 rtTA BirA eIF4G +MIC", "sequence-type": "addgene-full", "addgene_id": "158790", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2020.01.006", + "https://www.ncbi.nlm.nih.gov/pubmed/31999954" + ], "kit": null, "att_sites": [ "attB1", @@ -59969,7 +63434,10 @@ "plasmid_name": "pSLIK 3xFLAG-TWIST2 neo", "sequence-type": "addgene-full", "addgene_id": "197936", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.277559.122", + "https://www.ncbi.nlm.nih.gov/pubmed/36810156" + ], "kit": null, "att_sites": [ "attB1", @@ -60037,7 +63505,9 @@ "plasmid_name": "Tol2-cmlc2-Trpa1b-2A-EGFP", "sequence-type": "addgene-full", "addgene_id": "106405", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28928472" + ], "kit": null, "att_sites": [ "attB1", @@ -60082,7 +63552,10 @@ "plasmid_name": "p414GPD-3xFLAG-Nop4 L306P", "sequence-type": "addgene-full", "addgene_id": "169262", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2017777118", + "https://www.ncbi.nlm.nih.gov/pubmed/33941690" + ], "kit": null, "att_sites": [ "attB1", @@ -60133,7 +63606,10 @@ "plasmid_name": "pJH202_pE12_hyCal9-eGFP", "sequence-type": "addgene-full", "addgene_id": "160415", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -60168,7 +63644,10 @@ "plasmid_name": "pDONR221_SLC38A1", "sequence-type": "addgene-full", "addgene_id": "132095", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -60199,7 +63678,6 @@ "plasmid_name": "pLEX307-CTSS-blast", "sequence-type": "addgene-full", "addgene_id": "158470", - "references": [], "kit": null, "file": "data/addgene_plasmids/158470.addgene-full.gb" }, @@ -60208,7 +63686,10 @@ "plasmid_name": "PDEST-pSP172BSSPE-pFOGc::RfA-ECFP", "sequence-type": "addgene-full", "addgene_id": "186403", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -60247,7 +63728,10 @@ "plasmid_name": "TFORF2948", "sequence-type": "addgene-full", "addgene_id": "144424", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -60307,7 +63791,10 @@ "plasmid_name": "actc1b-2PH-PLCd-mKate2", "sequence-type": "addgene-full", "addgene_id": "109500", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -60348,7 +63835,10 @@ "plasmid_name": "PB-TAC-ERP2-(N-HA)KRAS_G12D", "sequence-type": "addgene-full", "addgene_id": "201254", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2021.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/33915078" + ], "kit": null, "att_sites": [ "attB1", @@ -60407,7 +63897,10 @@ "plasmid_name": "pBSWHhc", "sequence-type": "addgene-full", "addgene_id": "133901", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attR1", @@ -60447,7 +63940,10 @@ "plasmid_name": "pDONR221-SLC39A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161235", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -60478,7 +63974,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.R172C", "sequence-type": "addgene-full", "addgene_id": "81610", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -60510,7 +64009,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep76", "sequence-type": "addgene-full", "addgene_id": "136863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -60553,7 +64055,6 @@ "plasmid_name": "PSMD3_miniTurbo_Nterm", "sequence-type": "addgene-full", "addgene_id": "221527", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -60597,7 +64098,10 @@ "plasmid_name": "pAG305GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14305", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -60656,7 +64160,10 @@ "plasmid_name": "pBBR5pemIKpBAD", "sequence-type": "addgene-full", "addgene_id": "129273", - "references": [], + "references": [ + "https://doi.org/10.1128/MRA.00769-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31488530" + ], "kit": null, "att_sites": [ "attR1", @@ -60698,7 +64205,10 @@ "plasmid_name": "pCM5.34", "sequence-type": "depositor-full", "addgene_id": "21390", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -60729,7 +64239,10 @@ "plasmid_name": "TFORF3394", "sequence-type": "addgene-full", "addgene_id": "144870", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -60789,7 +64302,10 @@ "plasmid_name": "pENTR4-FKBP12DD N-term A (B3-1)", "sequence-type": "depositor-full", "addgene_id": "17414", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -60814,7 +64330,6 @@ "plasmid_name": "pGENT R2 GW R1 RUBY", "sequence-type": "addgene-full", "addgene_id": "225988", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -60855,7 +64370,10 @@ "plasmid_name": "pcDNA3_AVPR2-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194372", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -60912,7 +64430,10 @@ "plasmid_name": "pHAGE-ERBB2-P551L", "sequence-type": "addgene-full", "addgene_id": "116344", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -60966,7 +64487,10 @@ "plasmid_name": "pDONR221_SLC10A3", "sequence-type": "addgene-full", "addgene_id": "131931", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -60997,7 +64521,10 @@ "plasmid_name": "pSLIK 3xFLAG-KIF20A zeo", "sequence-type": "addgene-full", "addgene_id": "192322", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -61062,7 +64589,10 @@ "plasmid_name": "pHWBF09exp", "sequence-type": "addgene-full", "addgene_id": "130833", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attB1", @@ -61098,7 +64628,10 @@ "plasmid_name": "pDONR223_FCGR3B_WT", "sequence-type": "addgene-full", "addgene_id": "82896", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -61127,7 +64660,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-46", "sequence-type": "depositor-full", "addgene_id": "46655", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -61177,7 +64713,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP1", "sequence-type": "addgene-full", "addgene_id": "158352", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -61222,7 +64761,10 @@ "plasmid_name": "IO201: pMVP (R4-R3) mCherry", "sequence-type": "addgene-full", "addgene_id": "121732", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -61256,7 +64798,6 @@ "plasmid_name": "R777-E078 Hs.EXOC6-nostop", "sequence-type": "depositor-full", "addgene_id": "70362", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -61268,7 +64809,10 @@ "plasmid_name": "pDONR223_GRB7_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82942", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -61298,7 +64842,10 @@ "plasmid_name": "pSGE_713_Ubi-3-Trl_dCP", "sequence-type": "depositor-full", "addgene_id": "71160", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -61331,7 +64878,6 @@ "plasmid_name": "p663-UBC-V5-GSK3B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158166", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -61397,7 +64943,10 @@ "plasmid_name": "pENTR R4-mCherry-R3", "sequence-type": "depositor-full", "addgene_id": "32311", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attR3", @@ -61431,7 +64980,10 @@ "plasmid_name": "pENTR1A_mmFbxw7_R505C (closed)", "sequence-type": "addgene-full", "addgene_id": "160103", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attL1", @@ -61455,7 +65007,10 @@ "plasmid_name": "pGWB511", "sequence-type": "depositor-full", "addgene_id": "74853", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -61503,7 +65058,10 @@ "plasmid_name": "p7053 pHAGE-P-CMVt-N-HA-GAW-BICD2", "sequence-type": "addgene-full", "addgene_id": "100143", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -61555,7 +65113,10 @@ "plasmid_name": "pDONR223_SCEL_WT", "sequence-type": "addgene-full", "addgene_id": "81870", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -61587,7 +65148,10 @@ "plasmid_name": "p{ie1-eGFP::FRT-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182175", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -61634,7 +65198,10 @@ "plasmid_name": "plenti-CAG-IKZF2-V2-FLAG-IRES-GFP", "sequence-type": "depositor-full", "addgene_id": "69049", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -61696,7 +65263,10 @@ "plasmid_name": "pDR3.06", "sequence-type": "depositor-full", "addgene_id": "19368", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -61719,7 +65289,6 @@ "plasmid_name": "p667-UBC-HIPK1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189886", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -61785,7 +65354,10 @@ "plasmid_name": "pYPQ289 (ErCas12a)", "sequence-type": "addgene-full", "addgene_id": "138126", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -61817,7 +65389,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP10_stop", "sequence-type": "addgene-full", "addgene_id": "168676", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -61846,7 +65421,10 @@ "plasmid_name": "pLEX307-SARS-CoV-2-3CL", "sequence-type": "addgene-full", "addgene_id": "160278", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -61906,7 +65484,10 @@ "plasmid_name": "pHAGE-BRAF-K601Q", "sequence-type": "addgene-full", "addgene_id": "116170", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -61957,7 +65538,9 @@ "plasmid_name": "pDONR221-ADCK3(1of3)", "sequence-type": "addgene-full", "addgene_id": "166153", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -61988,7 +65571,10 @@ "plasmid_name": "pAC1821_pCR8-SMN2-DN-RG6-SA", "sequence-type": "addgene-full", "addgene_id": "118655", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118655.addgene-full.gb" }, @@ -61997,7 +65583,6 @@ "plasmid_name": "R777-E321 Hs.SPRED1", "sequence-type": "depositor-full", "addgene_id": "70605", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -62025,7 +65610,10 @@ "plasmid_name": "p3E-rab23-DN", "sequence-type": "addgene-full", "addgene_id": "109734", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -62056,7 +65644,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_K36E_R38E", "sequence-type": "depositor-full", "addgene_id": "65095", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -62101,7 +65692,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.V332L", "sequence-type": "addgene-full", "addgene_id": "81424", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -62133,7 +65727,10 @@ "plasmid_name": "pcDNA3.2 TDP-43 NLS1 YFP", "sequence-type": "addgene-full", "addgene_id": "84912", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09320", + "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + ], "kit": null, "att_sites": [ "attB1", @@ -62187,7 +65784,6 @@ "plasmid_name": "pDEST-Spe4-RfA-Halotag-stop", "sequence-type": "addgene-full", "addgene_id": "186387", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -62231,7 +65827,10 @@ "plasmid_name": "pLEX_305-N-dTAG-FRA1", "sequence-type": "addgene-full", "addgene_id": "188742", - "references": [], + "references": [ + "https://doi.org/10.1007/s00018-022-04638-y", + "https://www.ncbi.nlm.nih.gov/pubmed/36534167" + ], "kit": null, "att_sites": [ "attB1", @@ -62291,7 +65890,10 @@ "plasmid_name": "TFORF2943", "sequence-type": "addgene-full", "addgene_id": "144419", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -62352,7 +65954,10 @@ "plasmid_name": "HNF1B_pLX307", "sequence-type": "addgene-full", "addgene_id": "98342", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -62412,7 +66017,9 @@ "plasmid_name": "p5E-mmCdh5pro (JDW 1239)", "sequence-type": "addgene-full", "addgene_id": "224478", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -62443,7 +66050,10 @@ "plasmid_name": "pDONR221-SLC25A44_STOP", "sequence-type": "addgene-full", "addgene_id": "161208", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -62474,7 +66084,9 @@ "plasmid_name": "pMpGWB421", "sequence-type": "depositor-full", "addgene_id": "68686", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -62523,7 +66135,10 @@ "plasmid_name": "pDONR223_BRAF_p.W450L", "sequence-type": "addgene-full", "addgene_id": "82830", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -62553,7 +66168,10 @@ "plasmid_name": "p35S_GFP-EVDinter-GUS", "sequence-type": "addgene-full", "addgene_id": "167123", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.220723.117", + "https://www.ncbi.nlm.nih.gov/pubmed/28784835" + ], "kit": null, "att_sites": [ "attB1", @@ -62594,7 +66212,10 @@ "plasmid_name": "pDONR223_PPP2R1A_p.W140C", "sequence-type": "addgene-full", "addgene_id": "82784", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -62623,7 +66244,6 @@ "plasmid_name": "R777-E268 Hs.RASSF8-nostop", "sequence-type": "depositor-full", "addgene_id": "70552", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -62635,7 +66255,10 @@ "plasmid_name": "pJW4.28", "sequence-type": "depositor-full", "addgene_id": "62878", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -62679,7 +66302,10 @@ "plasmid_name": "pENTR-ZmIAA25", "sequence-type": "addgene-full", "addgene_id": "188439", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -62710,7 +66336,10 @@ "plasmid_name": "actc1b-mKate2-rab4a", "sequence-type": "addgene-full", "addgene_id": "109646", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -62752,7 +66381,10 @@ "plasmid_name": "pCZGY3163", "sequence-type": "addgene-full", "addgene_id": "101248", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26376", + "https://www.ncbi.nlm.nih.gov/pubmed/28767038" + ], "kit": null, "att_sites": [ "attL1", @@ -62782,7 +66414,10 @@ "plasmid_name": "TFORF3286", "sequence-type": "addgene-full", "addgene_id": "144762", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -62842,7 +66477,10 @@ "plasmid_name": "pDONR221 Grc3", "sequence-type": "depositor-full", "addgene_id": "63760", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -62873,7 +66511,10 @@ "plasmid_name": "pDONR221_SLC18A2", "sequence-type": "addgene-full", "addgene_id": "131997", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -62904,7 +66545,10 @@ "plasmid_name": "pDONR221-SLC25A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161173", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -62935,7 +66579,10 @@ "plasmid_name": "pDONR223_GATA3_WT", "sequence-type": "addgene-full", "addgene_id": "81902", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -62967,7 +66614,10 @@ "plasmid_name": "pDONR221-ZNF705G", "sequence-type": "depositor-full", "addgene_id": "101505", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -62998,7 +66648,10 @@ "plasmid_name": "pDONR221-SLC29A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161293", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -63029,7 +66682,6 @@ "plasmid_name": "pLPC-C-SF-TAP-DEST-TLK1-WT", "sequence-type": "addgene-full", "addgene_id": "218829", - "references": [], "kit": null, "att_sites": [ "attB2" @@ -63064,7 +66716,10 @@ "plasmid_name": "pDONR-IAA10_no stop", "sequence-type": "depositor-full", "addgene_id": "83848", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -63095,7 +66750,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NS12.9_nostop", "sequence-type": "addgene-full", "addgene_id": "168704", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -63124,7 +66782,10 @@ "plasmid_name": "TFORF3006", "sequence-type": "addgene-full", "addgene_id": "144482", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -63185,7 +66846,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 K243R", "sequence-type": "addgene-full", "addgene_id": "129301", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attB1", @@ -63229,7 +66893,10 @@ "plasmid_name": "pDONR223_TBL1XR1_p.T349M", "sequence-type": "addgene-full", "addgene_id": "81482", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -63261,7 +66928,10 @@ "plasmid_name": "plenti-UbcP-IKZF1-V2-3xHA-pGK-Pur", "sequence-type": "addgene-full", "addgene_id": "69051", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -63321,7 +66991,10 @@ "plasmid_name": "pXNubA22-Dest", "sequence-type": "addgene-full", "addgene_id": "105087", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-59745-289-2_14", + "https://www.ncbi.nlm.nih.gov/pubmed/19083185" + ], "kit": null, "att_sites": [ "attR1", @@ -63371,7 +67044,10 @@ "plasmid_name": "pDONR221-K202R-short-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "195399", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "att_sites": [ "attL1", @@ -63402,7 +67078,10 @@ "plasmid_name": "pHAGE-EGFR-D256Y", "sequence-type": "addgene-full", "addgene_id": "116236", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -63456,7 +67135,10 @@ "plasmid_name": "pHAGE-APPSw;T719N", "sequence-type": "addgene-full", "addgene_id": "177094", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "att_sites": [ "attB1", @@ -63511,7 +67193,10 @@ "plasmid_name": "TFORF3426", "sequence-type": "addgene-full", "addgene_id": "144902", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -63571,7 +67256,6 @@ "plasmid_name": "R777-E002 Hs.AKT1-nostop", "sequence-type": "depositor-full", "addgene_id": "70286", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -63600,7 +67284,9 @@ "plasmid_name": "pDONR221-SOD2(v2)", "sequence-type": "addgene-full", "addgene_id": "166215", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -63631,7 +67317,10 @@ "plasmid_name": "pMH-SFB-BRCA1", "sequence-type": "addgene-full", "addgene_id": "99394", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0811159106", + "https://www.ncbi.nlm.nih.gov/pubmed/19369211" + ], "kit": null, "att_sites": [ "attB1", @@ -63670,7 +67359,10 @@ "plasmid_name": "TFORF3080", "sequence-type": "addgene-full", "addgene_id": "144556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -63730,7 +67422,10 @@ "plasmid_name": "MultiMate-PE2 HEK3", "sequence-type": "addgene-full", "addgene_id": "206274", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attB1", @@ -63779,7 +67474,10 @@ "plasmid_name": "pDONR223_HIST1H1E_WT", "sequence-type": "addgene-full", "addgene_id": "81762", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -63791,7 +67489,10 @@ "plasmid_name": "pDONR221-SLC52A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161347", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -63822,7 +67523,9 @@ "plasmid_name": "p3E-IRES-(n2)StayGold(c4)-pA (JDW 1364)", "sequence-type": "addgene-full", "addgene_id": "224537", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -63861,7 +67564,10 @@ "plasmid_name": "pSW_1", "sequence-type": "depositor-full", "addgene_id": "71279", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attR1", @@ -63901,7 +67607,10 @@ "plasmid_name": "SIN-PGK-Cas9-WPRE", "sequence-type": "addgene-full", "addgene_id": "87886", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "att_sites": [ "attB1", @@ -63954,7 +67663,9 @@ "plasmid_name": "pPB-cT3G-cERP2-RAD51", "sequence-type": "addgene-full", "addgene_id": "222567", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -63999,7 +67710,6 @@ "plasmid_name": "R4-LexAp65-R3", "sequence-type": "depositor-full", "addgene_id": "41438", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -64031,7 +67741,10 @@ "plasmid_name": "pME-foxc1a", "sequence-type": "addgene-full", "addgene_id": "132971", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "att_sites": [ "attL1", @@ -64062,7 +67775,10 @@ "plasmid_name": "pBA cMYC-BPC4", "sequence-type": "addgene-full", "addgene_id": "118668", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -64106,7 +67822,10 @@ "plasmid_name": "p3E-rab40c", "sequence-type": "addgene-full", "addgene_id": "109709", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -64137,7 +67856,10 @@ "plasmid_name": "JI702: pMAGIC (L5-L4) hU6::SaCas9 gRNA scaffold; RIP", "sequence-type": "addgene-full", "addgene_id": "121820", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -64171,7 +67893,10 @@ "plasmid_name": "LA802: pMVP (L3-L2) AID + WPRE", "sequence-type": "addgene-full", "addgene_id": "121794", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -64206,7 +67931,10 @@ "plasmid_name": "pDONR223_GABRA6_p.P345S", "sequence-type": "addgene-full", "addgene_id": "81419", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -64238,7 +67966,10 @@ "plasmid_name": "pAG305GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14401", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -64297,7 +68028,10 @@ "plasmid_name": "pCW57.1 WT1 +378 ATG", "sequence-type": "addgene-full", "addgene_id": "217644", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "att_sites": [ "attB1", @@ -64359,7 +68093,6 @@ "plasmid_name": "IDG_CACNA2D2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161616", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -64418,7 +68151,10 @@ "plasmid_name": "pDONRG_P4-P1R:TBA2p", "sequence-type": "addgene-full", "addgene_id": "128429", - "references": [], + "references": [ + "https://doi.org/10.1007/s11103-019-00909-8", + "https://www.ncbi.nlm.nih.gov/pubmed/31422517" + ], "kit": null, "att_sites": [ "attL4", @@ -64450,7 +68186,10 @@ "plasmid_name": "pDONR223-FGFR1", "sequence-type": "addgene-full", "addgene_id": "23922", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -64483,7 +68222,10 @@ "plasmid_name": "pGWB401NL3F10H", "sequence-type": "addgene-full", "addgene_id": "141285", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0454-4", + "https://www.ncbi.nlm.nih.gov/pubmed/31316580" + ], "kit": null, "att_sites": [ "attR1", @@ -64533,7 +68275,6 @@ "plasmid_name": "pENTR-Flippase-myc", "sequence-type": "addgene-full", "addgene_id": "139548", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -64565,7 +68306,10 @@ "plasmid_name": "pMXs-hLIN28A", "sequence-type": "addgene-full", "addgene_id": "47902", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1310291110", + "https://www.ncbi.nlm.nih.gov/pubmed/23812749" + ], "kit": null, "file": "data/addgene_plasmids/47902.addgene-full.gb" }, @@ -64574,7 +68318,9 @@ "plasmid_name": "pLENTI6.3/AR-GC-E2325", "sequence-type": "addgene-full", "addgene_id": "85128", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27378372" + ], "kit": null, "att_sites": [ "attB1", @@ -64634,7 +68380,6 @@ "plasmid_name": "R777-E144 Hs.NFKB1-nostop", "sequence-type": "depositor-full", "addgene_id": "70428", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -64662,7 +68407,10 @@ "plasmid_name": "pGWB553", "sequence-type": "depositor-full", "addgene_id": "74883", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -64710,7 +68458,10 @@ "plasmid_name": "pHAGE N' EGFP NAP1 FL IRES Blast", "sequence-type": "addgene-full", "addgene_id": "179100", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.202303082", + "https://www.ncbi.nlm.nih.gov/pubmed/38059900" + ], "kit": null, "att_sites": [ "attB1", @@ -64763,7 +68514,10 @@ "plasmid_name": "pHAGE-NRAS", "sequence-type": "addgene-full", "addgene_id": "116767", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -64813,7 +68567,10 @@ "plasmid_name": "pDONR223-ZNF165", "sequence-type": "addgene-full", "addgene_id": "88444", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -64842,7 +68599,10 @@ "plasmid_name": "C121-E06: gLuc", "sequence-type": "addgene-full", "addgene_id": "162890", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -64875,7 +68635,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16 E7 E80A/D81A", "sequence-type": "addgene-full", "addgene_id": "191548", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "att_sites": [ "attB1", @@ -64921,7 +68684,10 @@ "plasmid_name": "pDEST-CMV GFP-LC3B G120A", "sequence-type": "addgene-full", "addgene_id": "123115", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -64975,7 +68741,10 @@ "plasmid_name": "pDONR221_SLC35E2B", "sequence-type": "addgene-full", "addgene_id": "132074", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -65006,7 +68775,10 @@ "plasmid_name": "pZA13", "sequence-type": "addgene-full", "addgene_id": "158491", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -65036,7 +68808,10 @@ "plasmid_name": "pCZGY553", "sequence-type": "addgene-full", "addgene_id": "110883", - "references": [], + "references": [ + "https://doi.org/10.1523/JNEUROSCI.5464-09.2010", + "https://www.ncbi.nlm.nih.gov/pubmed/20203177" + ], "kit": null, "att_sites": [ "attR1", @@ -65072,7 +68847,10 @@ "plasmid_name": "pAG413GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14166", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -65133,7 +68911,10 @@ "plasmid_name": "pAct-GW-HygroR", "sequence-type": "addgene-full", "addgene_id": "149610", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2021996118", + "https://www.ncbi.nlm.nih.gov/pubmed/33443210" + ], "kit": null, "att_sites": [ "attR1", @@ -65169,7 +68950,10 @@ "plasmid_name": "pHPyV6-607a", "sequence-type": "depositor-full", "addgene_id": "24727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2010.05.006", + "https://www.ncbi.nlm.nih.gov/pubmed/20542254" + ], "kit": null, "att_sites": [ "attL1", @@ -65195,7 +68979,10 @@ "plasmid_name": "pENTR-p38KTRClover", "sequence-type": "depositor-full", "addgene_id": "59142", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attL1", @@ -65221,7 +69008,10 @@ "plasmid_name": "pLentiCMVblast_SLC38A2_wt", "sequence-type": "addgene-full", "addgene_id": "156180", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0959", + "https://www.ncbi.nlm.nih.gov/pubmed/32341021" + ], "kit": null, "att_sites": [ "attB1", @@ -65281,7 +69071,10 @@ "plasmid_name": "pAC8_GWs-Lox (VE5589)", "sequence-type": "addgene-full", "addgene_id": "163769", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-021-04715-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35132103" + ], "kit": null, "att_sites": [ "attR1", @@ -65323,7 +69116,6 @@ "plasmid_name": "DDX3X in pENTR", "sequence-type": "addgene-full", "addgene_id": "216572", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -65352,7 +69144,10 @@ "plasmid_name": "pHAGE-PTEN-Q298*", "sequence-type": "addgene-full", "addgene_id": "116628", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -65407,7 +69202,10 @@ "plasmid_name": "pENTR223-BBLF4", "sequence-type": "addgene-full", "addgene_id": "195833", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -65436,7 +69234,10 @@ "plasmid_name": "pENTR223-BZLF1(Zta)", "sequence-type": "addgene-full", "addgene_id": "195787", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -65465,7 +69266,10 @@ "plasmid_name": "C512-E22: attB5r-mClover3-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162944", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -65493,7 +69297,10 @@ "plasmid_name": "MAC_N_SOX15", "sequence-type": "addgene-full", "addgene_id": "167792", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -65538,7 +69345,6 @@ "plasmid_name": "g5s pD47", "sequence-type": "addgene-full", "addgene_id": "117451", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -65590,7 +69396,10 @@ "plasmid_name": "pMuLE ENTR U6 stuffer sgRNA scaffold R4-R3", "sequence-type": "depositor-full", "addgene_id": "62131", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -65627,7 +69436,10 @@ "plasmid_name": "pGC450", "sequence-type": "depositor-full", "addgene_id": "19691", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attL3", @@ -65658,7 +69470,10 @@ "plasmid_name": "pENTR-2B-Nkx2-5 Y191C", "sequence-type": "addgene-full", "addgene_id": "98613", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -65682,7 +69497,10 @@ "plasmid_name": "HSF2BP_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176947", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -65734,7 +69552,10 @@ "plasmid_name": "pCFJ2113 - [4-1] - Promoter - Pmlc-1 (w ATG)", "sequence-type": "addgene-full", "addgene_id": "159888", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000302", + "https://www.ncbi.nlm.nih.gov/pubmed/32908967" + ], "kit": null, "att_sites": [ "attL4", @@ -65765,7 +69586,6 @@ "plasmid_name": "R777-E182 Hs.PIK3R6-nostop", "sequence-type": "depositor-full", "addgene_id": "70466", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -65793,7 +69613,10 @@ "plasmid_name": "pDONR221_SLC51A", "sequence-type": "addgene-full", "addgene_id": "132240", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -65824,7 +69647,10 @@ "plasmid_name": "pENTR-L3-oPRE-L2", "sequence-type": "depositor-full", "addgene_id": "32415", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL2", @@ -65855,7 +69681,10 @@ "plasmid_name": "pENTRDsRedEx2", "sequence-type": "depositor-full", "addgene_id": "22451", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attL1", @@ -65893,7 +69722,10 @@ "plasmid_name": "pVenusCfN", "sequence-type": "addgene-full", "addgene_id": "128566", - "references": [], + "references": [ + "https://doi.org/10.1177/1087057116659438", + "https://www.ncbi.nlm.nih.gov/pubmed/27455993" + ], "kit": null, "att_sites": [ "attR1", @@ -65948,7 +69780,10 @@ "plasmid_name": "pJRA103", "sequence-type": "addgene-full", "addgene_id": "209336", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -65989,7 +69824,6 @@ "plasmid_name": "BRAF - C251Y in pENTR", "sequence-type": "addgene-full", "addgene_id": "216609", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -66019,7 +69853,10 @@ "plasmid_name": "pMuLE_EXPR_CMV-eGFP_TOP-iRFP_PTCH1-mTurquoise2_CBF-tdTomato", "sequence-type": "addgene-full", "addgene_id": "113865", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "att_sites": [ "attB1", @@ -66094,7 +69931,10 @@ "plasmid_name": "pHAGE-PIK3CB-E1051K", "sequence-type": "addgene-full", "addgene_id": "116553", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -66149,7 +69989,10 @@ "plasmid_name": "pDONR/zeo-MACROD2", "sequence-type": "addgene-full", "addgene_id": "172573", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attL1", @@ -66179,7 +70022,10 @@ "plasmid_name": "pDONR223-CKB", "sequence-type": "addgene-full", "addgene_id": "23742", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -66211,7 +70057,10 @@ "plasmid_name": "pLD-puro-Cc-PRDX5WT-VA", "sequence-type": "addgene-full", "addgene_id": "98688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "att_sites": [ "attB1", @@ -66273,7 +70122,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir28-2", "sequence-type": "depositor-full", "addgene_id": "46685", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -66323,7 +70175,10 @@ "plasmid_name": "BirA-Myc_N_HME1", "sequence-type": "addgene-full", "addgene_id": "167709", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -66367,7 +70222,6 @@ "plasmid_name": "pAG416GAL10-SHV_3CL", "sequence-type": "addgene-full", "addgene_id": "203473", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -66416,7 +70270,10 @@ "plasmid_name": "pCFJ2475 - pEXP[Psmu-2 | mosase(PATCs) | gpd-2 tagRFP-T(myr, patcs) smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159813", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -66449,7 +70306,10 @@ "plasmid_name": "pDest17_hnRNPA1_allW", "sequence-type": "addgene-full", "addgene_id": "224252", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.04.06.535902", + "https://www.ncbi.nlm.nih.gov/pubmed/37066350" + ], "kit": null, "att_sites": [ "attB1", @@ -66484,7 +70344,10 @@ "plasmid_name": "pDONR221-SFXN2_STOP", "sequence-type": "addgene-full", "addgene_id": "161422", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -66515,7 +70378,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0488-luc2", "sequence-type": "addgene-full", "addgene_id": "214639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -66559,7 +70425,10 @@ "plasmid_name": "pT2-cryR;snx5P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90166", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90166.addgene-full.gb" }, @@ -66568,7 +70437,10 @@ "plasmid_name": "pDONR221-FOXH1", "sequence-type": "depositor-full", "addgene_id": "101431", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -66599,7 +70471,10 @@ "plasmid_name": "pJW4.02", "sequence-type": "addgene-full", "addgene_id": "131372", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -66643,7 +70518,10 @@ "plasmid_name": "pLX307-VHL(C162F)-3F-BirA", "sequence-type": "addgene-full", "addgene_id": "220149", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-024-01590-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38514884" + ], "kit": null, "att_sites": [ "attB1", @@ -66705,7 +70583,10 @@ "plasmid_name": "p3E-TurboID", "sequence-type": "addgene-full", "addgene_id": "166570", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "att_sites": [ "attL3", @@ -66737,7 +70618,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-dsRed_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135260", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -66807,7 +70687,10 @@ "plasmid_name": "pDEST-HemmarI2", "sequence-type": "addgene-full", "addgene_id": "112815", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301736", + "https://www.ncbi.nlm.nih.gov/pubmed/30504366" + ], "kit": null, "att_sites": [ "attR1", @@ -66845,7 +70728,10 @@ "plasmid_name": "pDEST40-2XFL-Src-K298M-Y419F-Y530F", "sequence-type": "addgene-full", "addgene_id": "140321", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -66897,7 +70783,10 @@ "plasmid_name": "pDONR221-PARP7", "sequence-type": "addgene-full", "addgene_id": "184474", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "att_sites": [ "attL1", @@ -66928,7 +70817,10 @@ "plasmid_name": "pCAG/ATP9A(E195Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209244", - "references": [], + "references": [ + "https://doi.org/10.1002/1873-3468.13629", + "https://www.ncbi.nlm.nih.gov/pubmed/31571211" + ], "kit": null, "file": "data/addgene_plasmids/209244.addgene-full.gb" }, @@ -66937,7 +70829,10 @@ "plasmid_name": "pDONR221-FOXD4L1", "sequence-type": "addgene-full", "addgene_id": "101510", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -66966,7 +70861,10 @@ "plasmid_name": "pDONR223-ZNF545", "sequence-type": "addgene-full", "addgene_id": "88479", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -66995,7 +70893,9 @@ "plasmid_name": "pMpGWB227", "sequence-type": "depositor-full", "addgene_id": "68618", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -67043,7 +70943,10 @@ "plasmid_name": "pYPQ262m3", "sequence-type": "addgene-full", "addgene_id": "149556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2020.100101", + "https://www.ncbi.nlm.nih.gov/pubmed/33898973" + ], "kit": null, "att_sites": [ "attL1", @@ -67075,7 +70978,10 @@ "plasmid_name": "pDONR221-SLC41A1_STOP", "sequence-type": "depositor-full", "addgene_id": "161403", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -67106,7 +71012,10 @@ "plasmid_name": "pDONRPEX18Tp-SceI-pheS", "sequence-type": "addgene-full", "addgene_id": "111608", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.03909-14", + "https://www.ncbi.nlm.nih.gov/pubmed/25795676" + ], "kit": null, "att_sites": [ "attP1", @@ -67145,7 +71054,10 @@ "plasmid_name": "pENTR-R4R3-2xmRuby-C", "sequence-type": "depositor-full", "addgene_id": "113756", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -67180,7 +71092,10 @@ "plasmid_name": "MAC_N_RAB9A", "sequence-type": "addgene-full", "addgene_id": "111693", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -67225,7 +71140,10 @@ "plasmid_name": "pDL9", "sequence-type": "addgene-full", "addgene_id": "175907", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -67256,7 +71174,10 @@ "plasmid_name": "pDONR221_SLC24A1", "sequence-type": "addgene-full", "addgene_id": "132049", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -67287,7 +71208,10 @@ "plasmid_name": "Tol2-UAS-Dendra2-miR-223 sponge", "sequence-type": "addgene-full", "addgene_id": "97146", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "att_sites": [ "attB1", @@ -67331,7 +71255,10 @@ "plasmid_name": "W118-1_hTGM5-V5", "sequence-type": "addgene-full", "addgene_id": "180414", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "att_sites": [ "attB1", @@ -67394,7 +71321,6 @@ "plasmid_name": "pOTTC155", "sequence-type": "depositor-full", "addgene_id": "50949", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -67459,7 +71385,10 @@ "plasmid_name": "pYPQ-NF-L1-dMb2Cas12a", "sequence-type": "addgene-full", "addgene_id": "177683", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.202100571", + "https://www.ncbi.nlm.nih.gov/pubmed/35377968" + ], "kit": null, "att_sites": [ "attL1", @@ -67492,7 +71421,6 @@ "plasmid_name": "pAG426GAL-FES", "sequence-type": "addgene-full", "addgene_id": "203501", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -67546,7 +71474,10 @@ "plasmid_name": "pDONR223_REG1A_p.P105T", "sequence-type": "addgene-full", "addgene_id": "81295", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -67578,7 +71509,10 @@ "plasmid_name": "pENTR2-R2-PBR-L4", "sequence-type": "addgene-full", "addgene_id": "141017", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL4", @@ -67602,7 +71536,10 @@ "plasmid_name": "pYPQ142-ZmUbi-tRNA", "sequence-type": "addgene-full", "addgene_id": "158578", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00953-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34168320" + ], "kit": null, "att_sites": [ "attL2", @@ -67635,7 +71572,10 @@ "plasmid_name": "pHAGE-PTCH1-T1404A", "sequence-type": "addgene-full", "addgene_id": "116615", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -67689,7 +71629,10 @@ "plasmid_name": "pINDUCER21-puro_Gateway-3xFLAG", "sequence-type": "addgene-full", "addgene_id": "172981", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attR1", @@ -67750,7 +71693,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 A114Q", "sequence-type": "addgene-full", "addgene_id": "175767", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -67803,7 +71749,10 @@ "plasmid_name": "C453-E23: attB4-TRE3Gp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162979", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -67832,7 +71781,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RPS6KL1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170605", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -67898,7 +71846,10 @@ "plasmid_name": "MAC_C_INSR", "sequence-type": "addgene-full", "addgene_id": "187772", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187772.addgene-full.gb" }, @@ -67907,7 +71858,10 @@ "plasmid_name": "pDONR223_DLL1_WT", "sequence-type": "addgene-full", "addgene_id": "82108", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -67936,7 +71890,9 @@ "plasmid_name": "pMpGWB328", "sequence-type": "depositor-full", "addgene_id": "68656", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -67983,7 +71939,10 @@ "plasmid_name": "pDONR223_PPP6C_p.R264C", "sequence-type": "addgene-full", "addgene_id": "81341", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -68015,7 +71974,6 @@ "plasmid_name": "R777-E298 Hs.RPS6KB1-nostop", "sequence-type": "depositor-full", "addgene_id": "70582", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -68043,7 +72001,10 @@ "plasmid_name": "pAG304GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14231", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -68099,7 +72060,9 @@ "plasmid_name": "p3E-GFP no-pA", "sequence-type": "depositor-full", "addgene_id": "80813", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -68134,7 +72097,10 @@ "plasmid_name": "TFORF3510", "sequence-type": "depositor-full", "addgene_id": "144986", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -68194,7 +72160,10 @@ "plasmid_name": "Crimson/P2A-Control (pSLIK3)", "sequence-type": "addgene-full", "addgene_id": "113858", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0200955", + "https://www.ncbi.nlm.nih.gov/pubmed/30110337" + ], "kit": null, "att_sites": [ "attB1", @@ -68262,7 +72231,6 @@ "plasmid_name": "pAG426-GAL-Alpha-synuclein-A53T", "sequence-type": "addgene-full", "addgene_id": "181722", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -68313,7 +72281,10 @@ "plasmid_name": "pAG414GPD-GaCYP722C(pYL777)", "sequence-type": "addgene-full", "addgene_id": "178290", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -68365,7 +72336,10 @@ "plasmid_name": "pDONR223_BCL2L1_WT", "sequence-type": "addgene-full", "addgene_id": "82193", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -68394,7 +72368,10 @@ "plasmid_name": "pDONR221_SLC38A6", "sequence-type": "addgene-full", "addgene_id": "132106", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -68425,7 +72402,10 @@ "plasmid_name": "pTripZ RB1 WT-3XFLAG", "sequence-type": "addgene-full", "addgene_id": "209070", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-18-0389", + "https://www.ncbi.nlm.nih.gov/pubmed/30373918" + ], "kit": null, "att_sites": [ "attB1", @@ -68478,7 +72458,10 @@ "plasmid_name": "pDONR221_SLC30A3", "sequence-type": "addgene-full", "addgene_id": "132101", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -68509,7 +72492,10 @@ "plasmid_name": "pENTR4-GFP-C1 (w392-1)", "sequence-type": "depositor-full", "addgene_id": "17396", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17396.depositor-full.gb" }, @@ -68518,7 +72504,10 @@ "plasmid_name": "pDestTol2pA ins:Apollo-NADP+ mVenus", "sequence-type": "addgene-full", "addgene_id": "210518", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adi8317", + "https://www.ncbi.nlm.nih.gov/pubmed/37792934" + ], "kit": null, "att_sites": [ "attB1", @@ -68561,7 +72550,10 @@ "plasmid_name": "pCMU-GAr", "sequence-type": "depositor-full", "addgene_id": "61172", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -68606,7 +72598,10 @@ "plasmid_name": "pDONR223_PRKAA1_WT", "sequence-type": "addgene-full", "addgene_id": "82274", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -68635,7 +72630,6 @@ "plasmid_name": "R777-E050 Hs.E2F3-nostop", "sequence-type": "depositor-full", "addgene_id": "70334", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -68663,7 +72657,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CLK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170579", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -68729,7 +72722,10 @@ "plasmid_name": "pSEM266 - pEXP(mosTI, hygroR)[Pmex-5 | ceGFP(PATC, NLS) | tbb-2 3'UTR]", "sequence-type": "addgene-full", "addgene_id": "159829", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "att_sites": [ "attB1", @@ -68764,7 +72760,10 @@ "plasmid_name": "pAG414GPD-VvCYP722C(pYL852)", "sequence-type": "addgene-full", "addgene_id": "178297", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -68816,7 +72815,10 @@ "plasmid_name": "tetO-PBX1", "sequence-type": "addgene-full", "addgene_id": "170699", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -68878,7 +72880,10 @@ "plasmid_name": "pDONR223_BMI1_WT", "sequence-type": "addgene-full", "addgene_id": "82194", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1" @@ -68905,7 +72910,10 @@ "plasmid_name": "pGWB411", "sequence-type": "depositor-full", "addgene_id": "74805", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -68955,7 +72963,10 @@ "plasmid_name": "pCM1.157", "sequence-type": "depositor-full", "addgene_id": "21388", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -68988,7 +72999,10 @@ "plasmid_name": "pHAGE-PIK3CD-G124D", "sequence-type": "addgene-full", "addgene_id": "116569", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -69042,7 +73056,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PRKACB_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170602", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -69108,7 +73121,10 @@ "plasmid_name": "pDONR223_CPXCR1_p.E73K", "sequence-type": "addgene-full", "addgene_id": "81346", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -69120,7 +73136,10 @@ "plasmid_name": "MAC_C_RET", "sequence-type": "addgene-full", "addgene_id": "187775", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -69165,7 +73184,10 @@ "plasmid_name": "pLentiPGK Puro DEST ERKKTRClover", "sequence-type": "addgene-full", "addgene_id": "90227", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "att_sites": [ "attB1", @@ -69227,7 +73249,9 @@ "plasmid_name": "pMpGWB133", "sequence-type": "depositor-full", "addgene_id": "68587", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -69277,7 +73301,10 @@ "plasmid_name": "pUN381 - pTRV2-CHLH", "sequence-type": "addgene-full", "addgene_id": "203886", - "references": [], + "references": [ + "https://doi.org/10.1007/s00299-024-03208-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38743349" + ], "kit": null, "att_sites": [ "attB1", @@ -69321,7 +73348,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-OPTN", "sequence-type": "addgene-full", "addgene_id": "175760", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -69372,7 +73402,10 @@ "plasmid_name": "pENTR223-BDLF2", "sequence-type": "addgene-full", "addgene_id": "195809", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -69401,7 +73434,10 @@ "plasmid_name": "pUC-DEST-R3R4(R)", "sequence-type": "addgene-full", "addgene_id": "141010", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR3", @@ -69440,7 +73476,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-LATS1", "sequence-type": "addgene-full", "addgene_id": "172986", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -69485,7 +73524,10 @@ "plasmid_name": "pHAGE-PTCH1-G1212D", "sequence-type": "addgene-full", "addgene_id": "116612", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -69539,7 +73581,10 @@ "plasmid_name": "pcDNA5FRT/TO-PNGase-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113490", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB2" @@ -69581,7 +73626,6 @@ "plasmid_name": "pAG426GAL-KUNV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203506", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -69635,7 +73679,10 @@ "plasmid_name": "pSGE_757_S2-1_GATA-to-HEY", "sequence-type": "depositor-full", "addgene_id": "71178", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -69668,7 +73715,10 @@ "plasmid_name": "pENTR R4-GAL4-R3", "sequence-type": "depositor-full", "addgene_id": "32309", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attR3", @@ -69700,7 +73750,10 @@ "plasmid_name": "pDONR223_HRAS_p.A59T", "sequence-type": "addgene-full", "addgene_id": "81292", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -69732,7 +73785,10 @@ "plasmid_name": "pHAGE-MAN2B1-E149V", "sequence-type": "addgene-full", "addgene_id": "116426", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -69783,7 +73839,10 @@ "plasmid_name": "pYPQ-NF-L2-dMb2Cas12a", "sequence-type": "addgene-full", "addgene_id": "177684", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.202100571", + "https://www.ncbi.nlm.nih.gov/pubmed/35377968" + ], "kit": null, "att_sites": [ "attL1", @@ -69816,7 +73875,10 @@ "plasmid_name": "pENTR-Site1", "sequence-type": "depositor-full", "addgene_id": "24512", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0009846", + "https://www.ncbi.nlm.nih.gov/pubmed/20352097" + ], "kit": null, "att_sites": [ "attL1", @@ -69863,7 +73925,10 @@ "plasmid_name": "W118-1_hTGM2-V5", "sequence-type": "addgene-full", "addgene_id": "180413", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "att_sites": [ "attB1", @@ -69926,7 +73991,10 @@ "plasmid_name": "MAC_N_RS6", "sequence-type": "addgene-full", "addgene_id": "111694", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -69971,7 +74039,10 @@ "plasmid_name": "pAG305GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14353", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -70028,7 +74099,10 @@ "plasmid_name": "pMXs-ms-Sox18", "sequence-type": "depositor-full", "addgene_id": "50782", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "att_sites": [ "attB1", @@ -70056,7 +74130,10 @@ "plasmid_name": "pcDNA3.1_nHA Spinophilin", "sequence-type": "addgene-full", "addgene_id": "87122", - "references": [], + "references": [ + "https://doi.org/10.1155/2017/4153076", + "https://www.ncbi.nlm.nih.gov/pubmed/28634551" + ], "kit": null, "file": "data/addgene_plasmids/87122.addgene-full.gb" }, @@ -70065,7 +74142,6 @@ "plasmid_name": "pREP3xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79015", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -70111,7 +74187,10 @@ "plasmid_name": "pCM5.66", "sequence-type": "depositor-full", "addgene_id": "19370", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -70142,7 +74221,10 @@ "plasmid_name": "pCAG/ATP8B4(E170Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209243", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -70187,7 +74269,6 @@ "plasmid_name": "pCLX-KRT7-GFP", "sequence-type": "addgene-full", "addgene_id": "216853", - "references": [], "kit": null, "file": "data/addgene_plasmids/216853.addgene-full.gb" }, @@ -70196,7 +74277,6 @@ "plasmid_name": "Hs.HRAS Q61K", "sequence-type": "depositor-full", "addgene_id": "83187", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -70222,7 +74302,6 @@ "plasmid_name": "p663-UBC-TurboID-V5-CDK13_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135267", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -70288,7 +74367,10 @@ "plasmid_name": "pCZGY405", "sequence-type": "addgene-full", "addgene_id": "172694", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26376", + "https://www.ncbi.nlm.nih.gov/pubmed/28767038" + ], "kit": null, "att_sites": [ "attB1", @@ -70319,7 +74401,10 @@ "plasmid_name": "pYPQ155", "sequence-type": "depositor-full", "addgene_id": "69306", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL1", @@ -70351,7 +74436,10 @@ "plasmid_name": "pJW4.13", "sequence-type": "addgene-full", "addgene_id": "131375", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -70395,7 +74483,10 @@ "plasmid_name": "pDONR221-SLC25A26_STOP", "sequence-type": "addgene-full", "addgene_id": "161425", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -70426,7 +74517,10 @@ "plasmid_name": "pDONR223_BCL2L11_WT", "sequence-type": "addgene-full", "addgene_id": "82249", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -70455,7 +74549,10 @@ "plasmid_name": "pT2-cryR;dusp5P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90161", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90161.addgene-full.gb" }, @@ -70464,7 +74561,6 @@ "plasmid_name": "pAG416-GAL-FUS-R521C", "sequence-type": "addgene-full", "addgene_id": "181718", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -70518,7 +74614,10 @@ "plasmid_name": "pMDJ22 - pEXP[Psmu-2 | Cre Recombinase (PATCs) | gpd-2 tagRFP-T smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159814", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -70551,7 +74650,6 @@ "plasmid_name": "pAG416GAL10-SV-A_3C", "sequence-type": "addgene-full", "addgene_id": "203474", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -70600,7 +74698,10 @@ "plasmid_name": "pHAGE-PIK3CB-E470K", "sequence-type": "addgene-full", "addgene_id": "116554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -70655,7 +74756,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS-Ala148,Ala271 hygro", "sequence-type": "addgene-full", "addgene_id": "158639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attB1", @@ -70721,7 +74825,10 @@ "plasmid_name": "pMuLE_EXPR_CMV-eGFP_TOP-NLuc1.1_12GLI-FLuc_CBF-GLuc", "sequence-type": "addgene-full", "addgene_id": "113862", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "att_sites": [ "attB1", @@ -70799,7 +74906,10 @@ "plasmid_name": "pDONR/zeo-TARG1", "sequence-type": "addgene-full", "addgene_id": "172574", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attL1", @@ -70829,7 +74939,10 @@ "plasmid_name": "pAM-PAT-ProCDKA;1 GW", "sequence-type": "addgene-full", "addgene_id": "79750", - "references": [], + "references": [ + "https://doi.org/10.1038/ng1694", + "https://www.ncbi.nlm.nih.gov/pubmed/16311592" + ], "kit": null, "file": "data/addgene_plasmids/79750.addgene-full.gb" }, @@ -70838,7 +74951,10 @@ "plasmid_name": "pDONR221_SLC9C1", "sequence-type": "addgene-full", "addgene_id": "132247", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -70869,7 +74985,10 @@ "plasmid_name": "pLCS110", "sequence-type": "addgene-full", "addgene_id": "209331", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -70910,7 +75029,10 @@ "plasmid_name": "MAC_N_ELF5", "sequence-type": "addgene-full", "addgene_id": "187748", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -70955,7 +75077,10 @@ "plasmid_name": "pDONR223_HSPA5_WT", "sequence-type": "addgene-full", "addgene_id": "82132", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -70984,7 +75109,10 @@ "plasmid_name": "pDONR221 Ssf1", "sequence-type": "depositor-full", "addgene_id": "63778", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -71015,7 +75143,10 @@ "plasmid_name": "pENTR-2B-Nkx2-5 delta HD-G8", "sequence-type": "addgene-full", "addgene_id": "98614", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -71039,7 +75170,6 @@ "plasmid_name": "g7s pDONR", "sequence-type": "addgene-full", "addgene_id": "117456", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -71070,7 +75200,10 @@ "plasmid_name": "TMEM50B_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176940", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -71122,7 +75255,10 @@ "plasmid_name": "UAS::PTPRFa.1-DN-GFP", "sequence-type": "depositor-full", "addgene_id": "37110", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.01.040", + "https://www.ncbi.nlm.nih.gov/pubmed/22326027" + ], "kit": null, "att_sites": [ "attB1", @@ -71164,7 +75300,10 @@ "plasmid_name": "pENTR223-BORF2", "sequence-type": "addgene-full", "addgene_id": "195834", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -71193,7 +75332,10 @@ "plasmid_name": "pENTR223-BHRF1", "sequence-type": "addgene-full", "addgene_id": "195780", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -71222,7 +75364,10 @@ "plasmid_name": "pDONR-IAA13_no stop", "sequence-type": "depositor-full", "addgene_id": "83850", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -71253,7 +75398,10 @@ "plasmid_name": "C512-E15: attB5r-mVenus-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162943", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -71285,7 +75433,10 @@ "plasmid_name": "pDONR_P2R-P3_3'arm_apobb.1", "sequence-type": "addgene-full", "addgene_id": "128681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11259-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31366908" + ], "kit": null, "att_sites": [ "attL3", @@ -71316,7 +75467,6 @@ "plasmid_name": "DDX3X - R145C in PENTR", "sequence-type": "addgene-full", "addgene_id": "216575", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -71345,7 +75495,10 @@ "plasmid_name": "pME-Gal80ts", "sequence-type": "addgene-full", "addgene_id": "51619", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.22734", + "https://www.ncbi.nlm.nih.gov/pubmed/21905164" + ], "kit": null, "att_sites": [ "attL1", @@ -71377,7 +75530,10 @@ "plasmid_name": "pcDNA5 CMV 3xFG eIF4G1 +MIC", "sequence-type": "addgene-full", "addgene_id": "158776", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2020.01.006", + "https://www.ncbi.nlm.nih.gov/pubmed/31999954" + ], "kit": null, "att_sites": [ "attB1", @@ -71420,7 +75576,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-GABARAPL1-GFP", "sequence-type": "addgene-full", "addgene_id": "123112", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123112.addgene-full.gb" }, @@ -71429,7 +75588,10 @@ "plasmid_name": "MEN2A-MAC", "sequence-type": "addgene-full", "addgene_id": "139634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -71474,7 +75636,6 @@ "plasmid_name": "R777-E220 Hs.RALBP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70504", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -71502,7 +75663,10 @@ "plasmid_name": "pDONR221_SLC35F6", "sequence-type": "addgene-full", "addgene_id": "132073", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -71533,7 +75697,10 @@ "plasmid_name": "pENTR-L1-CAMKII(1.3)-L4", "sequence-type": "depositor-full", "addgene_id": "32577", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL1", @@ -71565,7 +75732,10 @@ "plasmid_name": "pcDNA5-FRT/TO-N-mEGFP-PARP6", "sequence-type": "addgene-full", "addgene_id": "178005", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "file": "data/addgene_plasmids/178005.addgene-full.gb" }, @@ -71574,7 +75744,10 @@ "plasmid_name": "pmTol-InsUAS-6MTnlstdTomato2A-Dusp6DM-CC", "sequence-type": "depositor-full", "addgene_id": "67687", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137919", + "https://www.ncbi.nlm.nih.gov/pubmed/27578780" + ], "kit": null, "att_sites": [ "attB1", @@ -71628,7 +75801,10 @@ "plasmid_name": "C122-E17: mPlum", "sequence-type": "addgene-full", "addgene_id": "162897", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -71663,7 +75839,10 @@ "plasmid_name": "pLenti_CMV_Puro_SFB_GNB1L", "sequence-type": "addgene-full", "addgene_id": "224381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.07.004", + "https://www.ncbi.nlm.nih.gov/pubmed/37541219" + ], "kit": null, "att_sites": [ "attB1", @@ -71728,7 +75907,10 @@ "plasmid_name": "DSCAM_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53906", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "att_sites": [ "attB1", @@ -71767,7 +75949,10 @@ "plasmid_name": "pHAGE-MAPK1", "sequence-type": "addgene-full", "addgene_id": "116760", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -71819,7 +76004,10 @@ "plasmid_name": "pDONR223-KDR", "sequence-type": "addgene-full", "addgene_id": "23925", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -71851,7 +76039,10 @@ "plasmid_name": "pHAGE-PIK3CA-E542Q", "sequence-type": "addgene-full", "addgene_id": "116480", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -71905,7 +76096,10 @@ "plasmid_name": "pDONR221_SLC4A10", "sequence-type": "addgene-full", "addgene_id": "132308", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -71936,7 +76130,10 @@ "plasmid_name": "pDONR221-ZNF7", "sequence-type": "addgene-full", "addgene_id": "88817", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88817.addgene-full.gb" }, @@ -71945,7 +76142,10 @@ "plasmid_name": "pCW57.1 WT1 +1 ATG", "sequence-type": "addgene-full", "addgene_id": "217643", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "att_sites": [ "attB1", @@ -72007,7 +76207,10 @@ "plasmid_name": "pEGFP\u2010RNASEH2B", "sequence-type": "addgene-full", "addgene_id": "108697", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkq980", + "https://www.ncbi.nlm.nih.gov/pubmed/21245041" + ], "kit": null, "att_sites": [ "attB1", @@ -72049,7 +76252,10 @@ "plasmid_name": "IH601: pMAGIC (R4-R3) NLS-Sa Cas9-NLS", "sequence-type": "addgene-full", "addgene_id": "121827", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -72084,7 +76290,10 @@ "plasmid_name": "pENTR223-GFP", "sequence-type": "addgene-full", "addgene_id": "198589", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -72117,7 +76326,10 @@ "plasmid_name": "pDONR221-SLC35B1_STOP", "sequence-type": "depositor-full", "addgene_id": "161265", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -72148,7 +76360,10 @@ "plasmid_name": "KN501: pMVP (L3-L2) ecDHFR DD + WPRE", "sequence-type": "addgene-full", "addgene_id": "121793", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -72183,7 +76398,10 @@ "plasmid_name": "pAG426GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14419", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -72246,7 +76464,9 @@ "plasmid_name": "pDONR221-DNAJB6", "sequence-type": "addgene-full", "addgene_id": "166169", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -72278,7 +76498,10 @@ "plasmid_name": "CBR1_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177008", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -72334,7 +76557,10 @@ "plasmid_name": "pTone-gata2aECE-Kaede", "sequence-type": "addgene-full", "addgene_id": "132976", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132976.addgene-full.gb" }, @@ -72343,7 +76569,6 @@ "plasmid_name": "R777-E146 Hs.NRAS-nostop", "sequence-type": "depositor-full", "addgene_id": "70430", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -72371,7 +76596,10 @@ "plasmid_name": "pENTR-D-Topo-kcnk17", "sequence-type": "addgene-full", "addgene_id": "208999", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -72403,7 +76631,9 @@ "plasmid_name": "pPB-cT3G-cERP2-ZNF541", "sequence-type": "addgene-full", "addgene_id": "222560", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -72449,7 +76679,10 @@ "plasmid_name": "pPB-MPP8_Flag2-Blast", "sequence-type": "addgene-full", "addgene_id": "175038", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-23308-4", + "https://www.ncbi.nlm.nih.gov/pubmed/34031396" + ], "kit": null, "att_sites": [ "attB1", @@ -72500,7 +76733,10 @@ "plasmid_name": "pAG414GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14383", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -72562,7 +76798,10 @@ "plasmid_name": "pMuLE ENTR SV40 LacZ L5-L2", "sequence-type": "depositor-full", "addgene_id": "62167", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -72596,7 +76835,10 @@ "plasmid_name": "MultiMate-PE3 HEK3", "sequence-type": "addgene-full", "addgene_id": "206273", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206273.addgene-full.gb" }, @@ -72605,7 +76847,10 @@ "plasmid_name": "pDONR223_DNMT3A_WT", "sequence-type": "addgene-full", "addgene_id": "81765", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -72617,7 +76862,10 @@ "plasmid_name": "pDONR221-SLC8A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161340", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -72648,7 +76896,9 @@ "plasmid_name": "p3E-V5-mClover3-pA (JDW 1318)", "sequence-type": "addgene-full", "addgene_id": "224530", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -72686,7 +76936,9 @@ "plasmid_name": "pDONR221-SNRNP70", "sequence-type": "addgene-full", "addgene_id": "166212", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -72717,7 +76969,10 @@ "plasmid_name": "pMH-SFB-USP7", "sequence-type": "addgene-full", "addgene_id": "99393", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "file": "data/addgene_plasmids/99393.addgene-full.gb" }, @@ -72726,7 +76981,10 @@ "plasmid_name": "pDD363", "sequence-type": "addgene-full", "addgene_id": "91829", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "att_sites": [ "attB1", @@ -72765,7 +77023,10 @@ "plasmid_name": "TFORF3075", "sequence-type": "addgene-full", "addgene_id": "144551", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -72825,7 +77086,10 @@ "plasmid_name": "pHAGE-EGFR-A611T", "sequence-type": "addgene-full", "addgene_id": "116231", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -72879,7 +77143,10 @@ "plasmid_name": "pLVX-UBE3B\u0394IQ-HA-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107350", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "att_sites": [ "attB1", @@ -72929,7 +77196,10 @@ "plasmid_name": "TFORF3429", "sequence-type": "addgene-full", "addgene_id": "144905", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -72989,7 +77259,10 @@ "plasmid_name": "pDONR223_ACAA1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82978", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -73018,7 +77291,10 @@ "plasmid_name": "pDONR223_EYS_p.R587I", "sequence-type": "addgene-full", "addgene_id": "81485", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -73050,7 +77326,10 @@ "plasmid_name": "KP201: pMVP (L5-L4) eGFP-P2A", "sequence-type": "addgene-full", "addgene_id": "121708", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -73087,7 +77366,6 @@ "plasmid_name": "Hs.KRAS4b T35S", "sequence-type": "depositor-full", "addgene_id": "83157", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -73113,7 +77391,10 @@ "plasmid_name": "MAC-SARS-CoV-2 E", "sequence-type": "addgene-full", "addgene_id": "158368", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -73158,7 +77439,10 @@ "plasmid_name": "TFORF3009", "sequence-type": "addgene-full", "addgene_id": "144485", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -73218,7 +77502,10 @@ "plasmid_name": "pDONR221 Cas9-RFC4", "sequence-type": "addgene-full", "addgene_id": "183199", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "att_sites": [ "attL1", @@ -73252,7 +77539,10 @@ "plasmid_name": "pCSDest2-2XNLS-SpCas9-WT-NLS-3XHA-NLS-TALentry", "sequence-type": "depositor-full", "addgene_id": "69232", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3624", + "https://www.ncbi.nlm.nih.gov/pubmed/26480473" + ], "kit": null, "att_sites": [ "attB1", @@ -73296,7 +77586,10 @@ "plasmid_name": "pDONR221-SLC27A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161294", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -73327,7 +77620,10 @@ "plasmid_name": "pDONR223_WISP2_WT", "sequence-type": "addgene-full", "addgene_id": "81905", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -73359,7 +77655,6 @@ "plasmid_name": "pDest-544", "sequence-type": "depositor-full", "addgene_id": "11519", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -73406,7 +77701,10 @@ "plasmid_name": "pDONR223_YTHDC1_p.E483Q", "sequence-type": "addgene-full", "addgene_id": "81551", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -73439,7 +77737,6 @@ "plasmid_name": "pBABEpuro-ARAF_S214T", "sequence-type": "depositor-full", "addgene_id": "51079", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -73470,7 +77767,10 @@ "plasmid_name": "actc1b-mKate2-rab40c", "sequence-type": "addgene-full", "addgene_id": "109641", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -73512,7 +77812,10 @@ "plasmid_name": "pDONR221_SLC24A4", "sequence-type": "addgene-full", "addgene_id": "131990", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -73543,7 +77846,10 @@ "plasmid_name": "pMuLE ENTR U6 stuffer sgRNA scaffold L5-L4", "sequence-type": "depositor-full", "addgene_id": "62129", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL4", @@ -73580,7 +77886,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-SV40 NLS", "sequence-type": "addgene-full", "addgene_id": "192318", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -73617,7 +77926,10 @@ "plasmid_name": "pT3-EF1aH c-Met", "sequence-type": "addgene-full", "addgene_id": "86498", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0706578104", + "https://www.ncbi.nlm.nih.gov/pubmed/17785413" + ], "kit": null, "att_sites": [ "attB1", @@ -73658,7 +77970,10 @@ "plasmid_name": "pDONR223_BRAF_p.L485S", "sequence-type": "addgene-full", "addgene_id": "82837", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -73688,7 +78003,10 @@ "plasmid_name": "pEBTetBl-CLIP-KIAA0841", "sequence-type": "addgene-full", "addgene_id": "136859", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -73733,7 +78051,10 @@ "plasmid_name": "pDONR223_ZBTB24_p.G568C", "sequence-type": "addgene-full", "addgene_id": "82783", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -73762,7 +78083,10 @@ "plasmid_name": "pDONR221-FOXE3", "sequence-type": "depositor-full", "addgene_id": "101429", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -73793,7 +78117,10 @@ "plasmid_name": "APOBEC3G_pLX307", "sequence-type": "addgene-full", "addgene_id": "98345", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -73853,7 +78180,10 @@ "plasmid_name": "pDONR221-kcnj2a", "sequence-type": "addgene-full", "addgene_id": "173127", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -73884,7 +78214,9 @@ "plasmid_name": "pMpGWB103", "sequence-type": "depositor-full", "addgene_id": "68557", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -73930,7 +78262,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mEos4b-RfA", "sequence-type": "addgene-full", "addgene_id": "186380", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -73974,7 +78305,9 @@ "plasmid_name": "pME-GFP-P2A", "sequence-type": "addgene-full", "addgene_id": "80807", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attB1", @@ -74011,7 +78344,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-ALKBH5", "sequence-type": "depositor-full", "addgene_id": "38073", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -74057,7 +78393,10 @@ "plasmid_name": "pDONR P4-P1R-ECFP", "sequence-type": "depositor-full", "addgene_id": "48352", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -74096,7 +78435,10 @@ "plasmid_name": "pDONR223_GABRA6_p.R238K", "sequence-type": "addgene-full", "addgene_id": "81423", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -74128,7 +78470,6 @@ "plasmid_name": "pmCellFree_KA3_Cterm-mCherry", "sequence-type": "addgene-full", "addgene_id": "169408", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -74176,7 +78517,9 @@ "plasmid_name": "pDONR221-ATP6V0D1", "sequence-type": "addgene-full", "addgene_id": "166154", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -74207,7 +78550,10 @@ "plasmid_name": "pHAGE-EGFR-R776C", "sequence-type": "addgene-full", "addgene_id": "116297", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -74261,7 +78607,10 @@ "plasmid_name": "LA901: pMAGIC (L3-L2) 3x HA epitope tag + polyA; hU6::Sp/xCas9 TRE#1 gRNA", "sequence-type": "addgene-full", "addgene_id": "131756", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attB3", @@ -74298,7 +78647,10 @@ "plasmid_name": "pAC1818_pCR8-gRG6-SA", "sequence-type": "addgene-full", "addgene_id": "118652", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -74331,7 +78683,10 @@ "plasmid_name": "p3E-rab6a-CA", "sequence-type": "addgene-full", "addgene_id": "109733", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -74362,7 +78717,10 @@ "plasmid_name": "pCS2 LRP6-APEX2-Ires-eGFP-PAC", "sequence-type": "addgene-full", "addgene_id": "180142", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-78019-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33299006" + ], "kit": null, "att_sites": [ "attB1", @@ -74415,7 +78773,10 @@ "plasmid_name": "TFORF3141", "sequence-type": "addgene-full", "addgene_id": "144617", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -74475,7 +78836,10 @@ "plasmid_name": "pAG416GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14267", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -74535,7 +78899,10 @@ "plasmid_name": "pGMCKq26-10M-hyg", "sequence-type": "depositor-full", "addgene_id": "27337", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "att_sites": [ "attB1", @@ -74573,7 +78940,10 @@ "plasmid_name": "pHAGE-BRAF-L597Q", "sequence-type": "addgene-full", "addgene_id": "116177", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -74628,7 +78998,10 @@ "plasmid_name": "A1-LCD-20G+20S-12F+12Y", "sequence-type": "addgene-full", "addgene_id": "178689", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -74663,7 +79036,10 @@ "plasmid_name": "pTol2CG NBT:NRGIIIa_R551Q:polyA", "sequence-type": "addgene-full", "addgene_id": "193013", - "references": [], + "references": [ + "https://doi.org/10.1002/humu.24393", + "https://www.ncbi.nlm.nih.gov/pubmed/35485770" + ], "kit": null, "att_sites": [ "attB1", @@ -74705,7 +79081,10 @@ "plasmid_name": "p{ie1-eGFP::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182172", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attR1", @@ -74756,7 +79135,10 @@ "plasmid_name": "pDONR223_CNBD1_WT", "sequence-type": "addgene-full", "addgene_id": "81877", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -74788,7 +79170,9 @@ "plasmid_name": "pMpGWB209", "sequence-type": "depositor-full", "addgene_id": "68600", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attB2", @@ -74836,7 +79220,10 @@ "plasmid_name": "p7054 pHAGE-P-CMVt-N-HA-GAW-COPE", "sequence-type": "addgene-full", "addgene_id": "100144", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -74888,7 +79275,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TTBK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189881", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -74954,7 +79340,10 @@ "plasmid_name": "pYPQ285-RVR", "sequence-type": "addgene-full", "addgene_id": "138121", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -74986,7 +79375,10 @@ "plasmid_name": "pDONR-BLINK2", "sequence-type": "addgene-full", "addgene_id": "117075", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-018-0186-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30377377" + ], "kit": null, "att_sites": [ "attL1", @@ -75010,7 +79402,10 @@ "plasmid_name": "pDONR223_OR2M2_WT", "sequence-type": "addgene-full", "addgene_id": "81758", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -75042,7 +79437,10 @@ "plasmid_name": "CPH3566 (pDEST15_Spt6 1223-1451)", "sequence-type": "addgene-full", "addgene_id": "91814", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.28723", + "https://www.ncbi.nlm.nih.gov/pubmed/28826505" + ], "kit": null, "att_sites": [ "attB1", @@ -75077,7 +79475,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-lin-4", "sequence-type": "depositor-full", "addgene_id": "46737", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -75118,7 +79519,6 @@ "plasmid_name": "p663-UBC-2xV5-miniTurbo-NES-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158161", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -75185,7 +79585,10 @@ "plasmid_name": "TFORF3462", "sequence-type": "addgene-full", "addgene_id": "144938", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -75245,7 +79648,10 @@ "plasmid_name": "pLX304_zeo_mmFbxw7_R505C", "sequence-type": "addgene-full", "addgene_id": "160104", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -75304,7 +79710,10 @@ "plasmid_name": "pDONR221_SLC2A9", "sequence-type": "addgene-full", "addgene_id": "131879", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -75335,7 +79744,10 @@ "plasmid_name": "IO601: pMVP (R4-R3) eCFP open", "sequence-type": "addgene-full", "addgene_id": "121735", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -75370,7 +79782,10 @@ "plasmid_name": "pAG414GPD-dCas9-VPR", "sequence-type": "depositor-full", "addgene_id": "63801", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3312", + "https://www.ncbi.nlm.nih.gov/pubmed/25730490" + ], "kit": null, "att_sites": [ "attB1", @@ -75426,7 +79841,10 @@ "plasmid_name": "pDONR223_CBR1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82945", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -75455,7 +79873,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP4", "sequence-type": "addgene-full", "addgene_id": "158355", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -75500,7 +79921,10 @@ "plasmid_name": "5'-3xFLAG Zmynd8+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212079", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -75540,7 +79964,10 @@ "plasmid_name": "pDONR223_HRAS_WT", "sequence-type": "addgene-full", "addgene_id": "81938", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -75569,7 +79996,10 @@ "plasmid_name": "GFP-PK1Dexp", "sequence-type": "addgene-full", "addgene_id": "130834", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attB1", @@ -75605,7 +80035,10 @@ "plasmid_name": "pDONR221-SLC25A47_STOP", "sequence-type": "addgene-full", "addgene_id": "161149", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -75636,7 +80069,10 @@ "plasmid_name": "pAG303GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14229", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -75692,7 +80128,10 @@ "plasmid_name": "pDONR223_CCND1_WT", "sequence-type": "addgene-full", "addgene_id": "82891", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -75722,7 +80161,10 @@ "plasmid_name": "pLD-puro-Cc-CR-PARK7E163K-VA", "sequence-type": "addgene-full", "addgene_id": "115191", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attB1", @@ -75784,7 +80226,10 @@ "plasmid_name": "TFORF3282", "sequence-type": "addgene-full", "addgene_id": "144758", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -75844,7 +80289,10 @@ "plasmid_name": "pSLIK 3xFLAG-PFN2_variant2 zeo", "sequence-type": "addgene-full", "addgene_id": "192325", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -75909,7 +80357,10 @@ "plasmid_name": "TFORF3401", "sequence-type": "addgene-full", "addgene_id": "144877", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -75969,7 +80420,9 @@ "plasmid_name": "pLV-EgI-ZeoR", "sequence-type": "addgene-full", "addgene_id": "207178", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "att_sites": [ "attR1", @@ -76023,7 +80476,10 @@ "plasmid_name": "pcDNA3_SP-GCGR-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194375", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -76080,7 +80536,10 @@ "plasmid_name": "pDONR221_SLC17A5", "sequence-type": "addgene-full", "addgene_id": "131936", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -76111,7 +80570,10 @@ "plasmid_name": "pEBTetBl-CLIP-CPAP", "sequence-type": "addgene-full", "addgene_id": "136864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -76156,7 +80618,6 @@ "plasmid_name": "MAPK9_BirA_Cterm", "sequence-type": "addgene-full", "addgene_id": "221520", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -76200,7 +80661,10 @@ "plasmid_name": "p35S_EVDwt", "sequence-type": "addgene-full", "addgene_id": "167119", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.220723.117", + "https://www.ncbi.nlm.nih.gov/pubmed/28784835" + ], "kit": null, "att_sites": [ "attB1", @@ -76233,7 +80697,10 @@ "plasmid_name": "pDONR221-SLC24A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161132", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -76264,7 +80731,10 @@ "plasmid_name": "Epac-S-H171", "sequence-type": "addgene-full", "addgene_id": "170353", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0122513", + "https://www.ncbi.nlm.nih.gov/pubmed/25875503" + ], "kit": null, "att_sites": [ "attB1", @@ -76303,7 +80773,6 @@ "plasmid_name": "pGP6G-ccdB", "sequence-type": "depositor-full", "addgene_id": "83880", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -76349,7 +80818,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM F405G", "sequence-type": "addgene-full", "addgene_id": "169988", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attB1", @@ -76401,7 +80873,10 @@ "plasmid_name": "pDONR223_TUBB_p.R359P", "sequence-type": "addgene-full", "addgene_id": "81617", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -76433,7 +80908,10 @@ "plasmid_name": "TLK1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98378", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -76493,7 +80971,10 @@ "plasmid_name": "actc1b-lamp1-mKate2", "sequence-type": "addgene-full", "addgene_id": "109507", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -76533,7 +81014,10 @@ "plasmid_name": "TFORF2947", "sequence-type": "addgene-full", "addgene_id": "144423", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -76593,7 +81077,10 @@ "plasmid_name": "DHX58", "sequence-type": "addgene-full", "addgene_id": "155542", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -76636,7 +81123,9 @@ "plasmid_name": "dnCEBP: pLenti-TRE-A-C/EBP-PGK-rtTAA-2A-Puro", "sequence-type": "addgene-full", "addgene_id": "177201", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.05.17.492374" + ], "kit": null, "att_sites": [ "attB1", @@ -76690,7 +81179,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS4", "sequence-type": "depositor-full", "addgene_id": "20243", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20243.depositor-full.gb" }, @@ -76699,7 +81191,10 @@ "plasmid_name": "pJH199_pE12_hyCal2-mCherry", "sequence-type": "addgene-full", "addgene_id": "160412", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -76730,7 +81225,6 @@ "plasmid_name": "pLEX307-TMPRSS11D-G418", "sequence-type": "addgene-full", "addgene_id": "158477", - "references": [], "kit": null, "file": "data/addgene_plasmids/158477.addgene-full.gb" }, @@ -76739,7 +81233,10 @@ "plasmid_name": "pDONR221_SLC27A6", "sequence-type": "addgene-full", "addgene_id": "132092", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -76770,7 +81267,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-Swa1::HA-RfA", "sequence-type": "addgene-full", "addgene_id": "186404", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -76808,7 +81308,10 @@ "plasmid_name": "FLS2-YFPn", "sequence-type": "addgene-full", "addgene_id": "87165", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.111.192575", + "https://www.ncbi.nlm.nih.gov/pubmed/22535420" + ], "kit": null, "att_sites": [ "attB1", @@ -76842,7 +81345,10 @@ "plasmid_name": "pENTR-GFP-WT1 +KTS N terminal HA", "sequence-type": "addgene-full", "addgene_id": "217639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "att_sites": [ "attB2", @@ -76877,7 +81383,10 @@ "plasmid_name": "p414GPD-3xFLAG-RBM28 WT", "sequence-type": "addgene-full", "addgene_id": "169265", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2017777118", + "https://www.ncbi.nlm.nih.gov/pubmed/33941690" + ], "kit": null, "att_sites": [ "attB1", @@ -76928,7 +81437,6 @@ "plasmid_name": "Hs.KRAS4b G12D", "sequence-type": "depositor-full", "addgene_id": "83131", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -76958,7 +81466,6 @@ "plasmid_name": "pENTR-R2L3-IRESpacDeltaTKpA", "sequence-type": "addgene-full", "addgene_id": "139535", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -76996,7 +81503,10 @@ "plasmid_name": "pHAGE-PIK3CA-D350G", "sequence-type": "addgene-full", "addgene_id": "116461", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -77050,7 +81560,6 @@ "plasmid_name": "pDEST-Opa1", "sequence-type": "addgene-full", "addgene_id": "191961", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -77091,7 +81600,10 @@ "plasmid_name": "pHAGE-TEX264-GFP", "sequence-type": "addgene-full", "addgene_id": "201925", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "att_sites": [ "attB1", @@ -77146,7 +81658,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) MXRA7", "sequence-type": "addgene-full", "addgene_id": "107500", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB1", @@ -77208,7 +81723,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP9", "sequence-type": "addgene-full", "addgene_id": "141263", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -77237,7 +81755,10 @@ "plasmid_name": "pDONR221 NLRP1 A59P", "sequence-type": "addgene-full", "addgene_id": "166816", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -77270,7 +81791,10 @@ "plasmid_name": "pAS2-1-Mrt4", "sequence-type": "addgene-full", "addgene_id": "99997", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attB1", @@ -77317,7 +81841,10 @@ "plasmid_name": "R701-X72-527: His6-tev-Hs.CALM1(76-148)", "sequence-type": "addgene-full", "addgene_id": "159695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bpj.2019.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30846362" + ], "kit": null, "att_sites": [ "attB1", @@ -77360,7 +81887,10 @@ "plasmid_name": "pDONR221-SLC23A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161203", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -77391,7 +81921,10 @@ "plasmid_name": "hsp70:Arl13b-mKate2", "sequence-type": "addgene-full", "addgene_id": "105964", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "att_sites": [ "attB1", @@ -77432,7 +81965,6 @@ "plasmid_name": "R777-E172 Hs.PIK3R1-nostop", "sequence-type": "depositor-full", "addgene_id": "70456", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -77460,7 +81992,10 @@ "plasmid_name": "pMuLE ENTR H1 L1-R5", "sequence-type": "depositor-full", "addgene_id": "62101", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -77493,7 +82028,10 @@ "plasmid_name": "R702-X80-635: His6-tev-Hs.NF1opt (1-2818) isoform 2", "sequence-type": "addgene-full", "addgene_id": "159575", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA119.010934", + "https://www.ncbi.nlm.nih.gov/pubmed/31836666" + ], "kit": null, "att_sites": [ "attB1", @@ -77529,7 +82067,10 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ashL344A-mCerulean", "sequence-type": "depositor-full", "addgene_id": "69580", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1311126110", + "https://www.ncbi.nlm.nih.gov/pubmed/24006363" + ], "kit": null, "att_sites": [ "attB1", @@ -77595,7 +82136,10 @@ "plasmid_name": "pHAGE-QKI__PACRG", "sequence-type": "addgene-full", "addgene_id": "116835", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -77646,7 +82190,10 @@ "plasmid_name": "pHAGE-PTH2", "sequence-type": "addgene-full", "addgene_id": "116781", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -77696,7 +82243,10 @@ "plasmid_name": "pDONR221_SLC18A3", "sequence-type": "addgene-full", "addgene_id": "132009", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -77727,7 +82277,6 @@ "plasmid_name": "pDest-557", "sequence-type": "addgene-full", "addgene_id": "161890", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -77775,7 +82324,10 @@ "plasmid_name": "pDONR223_NANOG_WT", "sequence-type": "addgene-full", "addgene_id": "82148", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -77804,7 +82356,10 @@ "plasmid_name": "pDONR223_DNAJC12_p.R178C", "sequence-type": "addgene-full", "addgene_id": "81301", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -77836,7 +82391,6 @@ "plasmid_name": "pAG416GALL-SARS-CoV_3CL", "sequence-type": "addgene-full", "addgene_id": "203495", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -77883,7 +82437,10 @@ "plasmid_name": "pEntr-SRFflbio", "sequence-type": "depositor-full", "addgene_id": "32971", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1016959108", + "https://www.ncbi.nlm.nih.gov/pubmed/21415370" + ], "kit": null, "att_sites": [ "attL1", @@ -77909,7 +82466,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L1R5", "sequence-type": "addgene-full", "addgene_id": "113737", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -77943,7 +82503,10 @@ "plasmid_name": "pENTR4 Ta-sro1 WWE-PARP", "sequence-type": "addgene-full", "addgene_id": "192548", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koac261", + "https://www.ncbi.nlm.nih.gov/pubmed/35980152" + ], "kit": null, "att_sites": [ "attL1", @@ -77967,7 +82530,10 @@ "plasmid_name": "pPB-DEST-R1R2-pNeo", "sequence-type": "addgene-full", "addgene_id": "141057", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR1", @@ -78017,7 +82583,10 @@ "plasmid_name": "pHAGE-RAF1-L86R", "sequence-type": "addgene-full", "addgene_id": "116655", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -78071,7 +82640,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (R39H)", "sequence-type": "addgene-full", "addgene_id": "119309", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -78123,7 +82695,10 @@ "plasmid_name": "pCFJ906", "sequence-type": "depositor-full", "addgene_id": "44472", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attR3", @@ -78156,7 +82731,10 @@ "plasmid_name": "pKM1000", "sequence-type": "depositor-full", "addgene_id": "8840", - "references": [], + "references": [ + "https://doi.org/10.1016/S0014-5793%2803%2900070-X", + "https://www.ncbi.nlm.nih.gov/pubmed/12606030" + ], "kit": null, "att_sites": [ "attR1", @@ -78196,7 +82774,10 @@ "plasmid_name": "C511-E15: attB5r-ffluc2-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162939", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -78225,7 +82806,10 @@ "plasmid_name": "Flag-HA-EIF3S5", "sequence-type": "addgene-full", "addgene_id": "22546", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -78270,7 +82854,10 @@ "plasmid_name": "pDONR223_SOX2_WT", "sequence-type": "addgene-full", "addgene_id": "82233", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -78299,7 +82886,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0502-luc2", "sequence-type": "addgene-full", "addgene_id": "214644", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -78343,7 +82933,10 @@ "plasmid_name": "pDONR201-Eps8L2_181-299", "sequence-type": "addgene-full", "addgene_id": "196528", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196528.addgene-full.gb" }, @@ -78352,7 +82945,6 @@ "plasmid_name": "R777-E098 Hs.FOS-nostop", "sequence-type": "depositor-full", "addgene_id": "70382", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -78380,7 +82972,9 @@ "plasmid_name": "pDRFLIP34", "sequence-type": "depositor-full", "addgene_id": "65512", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -78429,7 +83023,10 @@ "plasmid_name": "pSGE_871_Nhe2_EcR-to-ato", "sequence-type": "depositor-full", "addgene_id": "71180", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -78462,7 +83059,10 @@ "plasmid_name": "pLenti-PGK-RAP1A-WT-puro", "sequence-type": "addgene-full", "addgene_id": "156166", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -78522,7 +83122,10 @@ "plasmid_name": "373 pTol2-fli1ep:CherryDest", "sequence-type": "depositor-full", "addgene_id": "73493", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -78574,7 +83177,10 @@ "plasmid_name": "pDONR221_SLC35C2", "sequence-type": "addgene-full", "addgene_id": "132146", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -78605,7 +83211,10 @@ "plasmid_name": "pLVX-EGFP-IRES-Neo", "sequence-type": "addgene-full", "addgene_id": "128660", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128660.addgene-full.gb" }, @@ -78614,7 +83223,6 @@ "plasmid_name": "MECP2 - R133C in pENTR", "sequence-type": "addgene-full", "addgene_id": "216594", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -78644,7 +83252,10 @@ "plasmid_name": "pLX302 OASL-V5 puro", "sequence-type": "addgene-full", "addgene_id": "158643", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attB1", @@ -78705,7 +83316,10 @@ "plasmid_name": "pTol2_(-3kb)nrg1_typeII:GFP-CAAX", "sequence-type": "addgene-full", "addgene_id": "199394", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "att_sites": [ "attB1", @@ -78744,7 +83358,6 @@ "plasmid_name": "pDD400", "sequence-type": "addgene-full", "addgene_id": "137024", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -78775,7 +83388,6 @@ "plasmid_name": "R777-E134 Hs.MLST8-nostop", "sequence-type": "depositor-full", "addgene_id": "70418", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -78803,7 +83415,10 @@ "plasmid_name": "pAAVS1-P-CAG-GFPluc2", "sequence-type": "depositor-full", "addgene_id": "80493", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "att_sites": [ "attB1", @@ -78862,7 +83477,10 @@ "plasmid_name": "MAC_N_KLF9", "sequence-type": "addgene-full", "addgene_id": "167774", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -78907,7 +83525,6 @@ "plasmid_name": "pDEST-GST-hSYK", "sequence-type": "addgene-full", "addgene_id": "211892", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -78955,7 +83572,10 @@ "plasmid_name": "p414GPD-3xFLAG-GW", "sequence-type": "depositor-full", "addgene_id": "63780", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attR1", @@ -79010,7 +83630,10 @@ "plasmid_name": "pHAGE-DAPK1", "sequence-type": "addgene-full", "addgene_id": "116727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -79059,7 +83682,10 @@ "plasmid_name": "pJAK2.B", "sequence-type": "depositor-full", "addgene_id": "29463", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2009.07.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19647016" + ], "kit": null, "att_sites": [ "attR1", @@ -79085,7 +83711,9 @@ "plasmid_name": "p3E-CMVmin:GFPmem pA", "sequence-type": "depositor-full", "addgene_id": "80823", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -79128,7 +83756,10 @@ "plasmid_name": "MAC_C_SCO1", "sequence-type": "addgene-full", "addgene_id": "111675", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -79173,7 +83804,6 @@ "plasmid_name": "IDG_CATSPER2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161656", - "references": [], "kit": null, "file": "data/addgene_plasmids/161656.addgene-full.gb" }, @@ -79182,7 +83812,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-MYEF2", "sequence-type": "addgene-full", "addgene_id": "38069", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -79228,7 +83861,10 @@ "plasmid_name": "pLV-hPLXNB2_PGK_Neo", "sequence-type": "addgene-full", "addgene_id": "176848", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -79288,7 +83924,10 @@ "plasmid_name": "pDONR223_RAB42_p.A61T", "sequence-type": "addgene-full", "addgene_id": "81273", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -79320,7 +83959,10 @@ "plasmid_name": "pMx/ATP11C-c-HA", "sequence-type": "addgene-full", "addgene_id": "209239", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258523", + "https://www.ncbi.nlm.nih.gov/pubmed/34528675" + ], "kit": null, "att_sites": [ "attB1", @@ -79356,7 +83998,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag4_nostop", "sequence-type": "addgene-full", "addgene_id": "153176", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -79387,7 +84032,10 @@ "plasmid_name": "ath5:GFP-DCX", "sequence-type": "addgene-full", "addgene_id": "105959", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105959.addgene-full.gb" }, @@ -79396,7 +84044,10 @@ "plasmid_name": "PLX_307 GFP", "sequence-type": "addgene-full", "addgene_id": "184492", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abf0529", + "https://www.ncbi.nlm.nih.gov/pubmed/35298263" + ], "kit": null, "att_sites": [ "attB1", @@ -79460,7 +84111,6 @@ "plasmid_name": "pEF 4r-YFP-3r", "sequence-type": "depositor-full", "addgene_id": "20096", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -79496,7 +84146,10 @@ "plasmid_name": "R989-X28-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12D", "sequence-type": "addgene-full", "addgene_id": "159548", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -79544,7 +84197,9 @@ "plasmid_name": "pMpGWB401", "sequence-type": "depositor-full", "addgene_id": "68666", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -79593,7 +84248,10 @@ "plasmid_name": "pCPP5306", "sequence-type": "addgene-full", "addgene_id": "128712", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -79624,7 +84282,10 @@ "plasmid_name": "pAG425GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14201", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -79687,7 +84348,10 @@ "plasmid_name": "pDONR221_SLC22A1", "sequence-type": "addgene-full", "addgene_id": "132034", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms23031203", + "https://www.ncbi.nlm.nih.gov/pubmed/35163125" + ], "kit": null, "att_sites": [ "attL1", @@ -79718,7 +84382,10 @@ "plasmid_name": "pENTR-actin-R62D", "sequence-type": "addgene-full", "addgene_id": "118379", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attL1", @@ -79749,7 +84416,10 @@ "plasmid_name": "SKIV2L", "sequence-type": "addgene-full", "addgene_id": "156014", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -79792,7 +84462,10 @@ "plasmid_name": "pHAGE-ATP2B4__OPTC", "sequence-type": "addgene-full", "addgene_id": "116808", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -79843,7 +84516,6 @@ "plasmid_name": "pDONR221-dyrk1aa", "sequence-type": "addgene-full", "addgene_id": "192741", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -79875,7 +84547,10 @@ "plasmid_name": "pCLX-CHOP-dGFP", "sequence-type": "depositor-full", "addgene_id": "71299", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.01.061", + "https://www.ncbi.nlm.nih.gov/pubmed/25732825" + ], "kit": null, "att_sites": [ "attB1", @@ -79927,7 +84602,10 @@ "plasmid_name": "pDONR223_CDK4_p.R24C", "sequence-type": "addgene-full", "addgene_id": "82175", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -79956,7 +84634,10 @@ "plasmid_name": "pCOBL-GW", "sequence-type": "addgene-full", "addgene_id": "209376", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209376.addgene-full.gb" }, @@ -79965,7 +84646,10 @@ "plasmid_name": "pDONR221_SLCO1B3", "sequence-type": "addgene-full", "addgene_id": "132200", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -79996,7 +84680,10 @@ "plasmid_name": "pHAGE-PIK3R1-E451delE", "sequence-type": "addgene-full", "addgene_id": "116588", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -80047,7 +84734,10 @@ "plasmid_name": "plIVMD156", "sequence-type": "addgene-full", "addgene_id": "160934", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2002650117", + "https://www.ncbi.nlm.nih.gov/pubmed/33037152" + ], "kit": null, "att_sites": [ "attR1", @@ -80100,7 +84790,10 @@ "plasmid_name": "pDONR223 GABARAP G116A", "sequence-type": "addgene-full", "addgene_id": "123081", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -80129,7 +84822,10 @@ "plasmid_name": "pPB-cT3G-cERP2-LHX9", "sequence-type": "addgene-full", "addgene_id": "192921", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -80175,7 +84871,10 @@ "plasmid_name": "pHAGE-RET-G751E", "sequence-type": "addgene-full", "addgene_id": "116668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -80224,7 +84923,10 @@ "plasmid_name": "pDONR223-NPR2", "sequence-type": "addgene-full", "addgene_id": "23479", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -80257,7 +84959,10 @@ "plasmid_name": "C232-E08: attB2r-mTFP1-attB3", "sequence-type": "addgene-full", "addgene_id": "162904", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -80286,7 +84991,10 @@ "plasmid_name": "pDESTmycYBX1", "sequence-type": "addgene-full", "addgene_id": "19878", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -80333,7 +85041,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PIP4K2C_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170598", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -80399,7 +85106,10 @@ "plasmid_name": "pMEdusp5P1gfp", "sequence-type": "addgene-full", "addgene_id": "90126", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL1", @@ -80436,7 +85146,10 @@ "plasmid_name": "pLenti CMV Neo DEST (705-1)", "sequence-type": "addgene-full", "addgene_id": "17392", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -80503,7 +85216,6 @@ "plasmid_name": "His8:MBP-tev-Leu-e\u0394K-Flv", "sequence-type": "addgene-full", "addgene_id": "83397", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -80542,7 +85254,10 @@ "plasmid_name": "GFP-BRDT", "sequence-type": "addgene-full", "addgene_id": "65381", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -80594,7 +85309,10 @@ "plasmid_name": "pME-PLIN2-tdTOMATO", "sequence-type": "addgene-full", "addgene_id": "172533", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64744", + "https://www.ncbi.nlm.nih.gov/pubmed/34114952" + ], "kit": null, "att_sites": [ "attL1", @@ -80626,7 +85344,10 @@ "plasmid_name": "pRATIO3212", "sequence-type": "addgene-full", "addgene_id": "141311", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141311.addgene-full.gb" }, @@ -80635,7 +85356,10 @@ "plasmid_name": "pRSET-Cm-CspB", "sequence-type": "addgene-full", "addgene_id": "215400", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2319499121", + "https://www.ncbi.nlm.nih.gov/pubmed/38814867" + ], "kit": null, "att_sites": [ "attB1", @@ -80667,7 +85391,10 @@ "plasmid_name": "pHAGE-PIK3CA-M1V", "sequence-type": "addgene-full", "addgene_id": "116513", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -80721,7 +85448,10 @@ "plasmid_name": "pCFJ2092 - [1-2] ENTR - Fluor - mNeon(PATC)", "sequence-type": "addgene-full", "addgene_id": "159853", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -80753,7 +85483,10 @@ "plasmid_name": "MAC_C_ERBB3", "sequence-type": "addgene-full", "addgene_id": "187794", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -80798,7 +85531,10 @@ "plasmid_name": "pDONR223_STK11_p.D176H", "sequence-type": "addgene-full", "addgene_id": "82870", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -80827,7 +85563,10 @@ "plasmid_name": "MiniCoopR mitfa:KIT L576P", "sequence-type": "addgene-full", "addgene_id": "118848", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -80866,7 +85605,10 @@ "plasmid_name": "pHAGE-ERBB2-L755_T759delLRENT", "sequence-type": "addgene-full", "addgene_id": "116339", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -80920,7 +85662,10 @@ "plasmid_name": "pDONR221-MFSD9_STOP", "sequence-type": "depositor-full", "addgene_id": "161060", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -80951,7 +85696,9 @@ "plasmid_name": "p3e UbB polyA", "sequence-type": "addgene-full", "addgene_id": "188702", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "att_sites": [ "attL3", @@ -80982,7 +85729,6 @@ "plasmid_name": "R777-E351 Hs.TP53", "sequence-type": "depositor-full", "addgene_id": "70635", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -81011,7 +85757,10 @@ "plasmid_name": "TFORF2983", "sequence-type": "addgene-full", "addgene_id": "144459", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -81071,7 +85820,10 @@ "plasmid_name": "DHX35", "sequence-type": "addgene-full", "addgene_id": "155538", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -81114,7 +85866,10 @@ "plasmid_name": "pAG305GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14186", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -81172,7 +85927,10 @@ "plasmid_name": "pDONR221-SLC38A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161248", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -81203,7 +85961,10 @@ "plasmid_name": "SIN-cPPT-H1-sgHtt1-7SK-sgCas9-PGK-mCherry-WPRE", "sequence-type": "addgene-full", "addgene_id": "87912", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "att_sites": [ "attB1", @@ -81260,7 +86021,6 @@ "plasmid_name": "pCLX-Ngn3-GFP", "sequence-type": "addgene-full", "addgene_id": "114309", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -81313,7 +86073,6 @@ "plasmid_name": "R777-E068 Hs.EXOC1-nostop", "sequence-type": "depositor-full", "addgene_id": "70352", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -81341,7 +86100,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND L368G", "sequence-type": "addgene-full", "addgene_id": "169969", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -81372,7 +86134,6 @@ "plasmid_name": "pCW57.1_V5_FLAG_Nt", "sequence-type": "addgene-full", "addgene_id": "194074", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -81430,7 +86191,10 @@ "plasmid_name": "pDONR223-ZNF511", "sequence-type": "addgene-full", "addgene_id": "88081", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -81459,7 +86223,10 @@ "plasmid_name": "pGWB521", "sequence-type": "depositor-full", "addgene_id": "74863", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -81507,7 +86274,10 @@ "plasmid_name": "TFORF3420", "sequence-type": "addgene-full", "addgene_id": "144896", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -81567,7 +86337,10 @@ "plasmid_name": "actc1b-mKate2-rab1ab", "sequence-type": "addgene-full", "addgene_id": "109606", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -81609,7 +86382,10 @@ "plasmid_name": "TFORF3246", "sequence-type": "addgene-full", "addgene_id": "144722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -81669,7 +86445,10 @@ "plasmid_name": "pDONR223 ATG3 allKR", "sequence-type": "addgene-full", "addgene_id": "129295", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attL1", @@ -81698,7 +86477,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_delta3291-3298", "sequence-type": "addgene-full", "addgene_id": "187125", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -81743,7 +86525,10 @@ "plasmid_name": "pDONR223_FBXW7_p.R689Q", "sequence-type": "addgene-full", "addgene_id": "81516", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -81775,7 +86560,10 @@ "plasmid_name": "476 p5E-mcs", "sequence-type": "depositor-full", "addgene_id": "26029", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -81811,7 +86599,10 @@ "plasmid_name": "pDONR221-SLC25A15_STOP", "sequence-type": "addgene-full", "addgene_id": "161133", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -81842,7 +86633,10 @@ "plasmid_name": "CPSF4", "sequence-type": "addgene-full", "addgene_id": "155477", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -81885,7 +86679,6 @@ "plasmid_name": "pPB-CAG-Venus-Akaluc", "sequence-type": "addgene-full", "addgene_id": "209768", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -81938,7 +86731,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP5_nostop", "sequence-type": "addgene-full", "addgene_id": "168690", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -81967,7 +86763,10 @@ "plasmid_name": "TFORF3040", "sequence-type": "addgene-full", "addgene_id": "144516", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144516.addgene-full.gb" }, @@ -81976,7 +86775,10 @@ "plasmid_name": "pEntry_HCoV-NL63-Envelope", "sequence-type": "addgene-full", "addgene_id": "168924", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -82006,7 +86808,10 @@ "plasmid_name": "pHAGE-BRAF-S637*", "sequence-type": "addgene-full", "addgene_id": "116196", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -82061,7 +86866,10 @@ "plasmid_name": "pDEST-periHisMBP", "sequence-type": "depositor-full", "addgene_id": "11086", - "references": [], + "references": [ + "https://doi.org/10.1110/ps.051718605", + "https://www.ncbi.nlm.nih.gov/pubmed/16322578" + ], "kit": null, "att_sites": [ "attR1", @@ -82111,7 +86919,10 @@ "plasmid_name": "pDONR223_C15orf23_WT", "sequence-type": "addgene-full", "addgene_id": "81896", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -82144,7 +86955,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-mir-34", "sequence-type": "depositor-full", "addgene_id": "46665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -82194,7 +87008,10 @@ "plasmid_name": "pDONR221-SLC39A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161307", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -82225,7 +87042,10 @@ "plasmid_name": "A1-LCD-2K", "sequence-type": "addgene-full", "addgene_id": "178668", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -82260,7 +87080,10 @@ "plasmid_name": "pDONR223_ERBB2_p.V842I", "sequence-type": "addgene-full", "addgene_id": "81722", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -82292,7 +87115,10 @@ "plasmid_name": "pDONR221-Basigin", "sequence-type": "addgene-full", "addgene_id": "221415", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -82323,7 +87149,10 @@ "plasmid_name": "pH7m34GW_RcCHAD-mCherry", "sequence-type": "addgene-full", "addgene_id": "127784", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.201900385", + "https://www.ncbi.nlm.nih.gov/pubmed/31133615" + ], "kit": null, "att_sites": [ "attB1", @@ -82367,7 +87196,10 @@ "plasmid_name": "pHAGE-EGFR-L858R", "sequence-type": "addgene-full", "addgene_id": "116276", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -82417,7 +87249,10 @@ "plasmid_name": "TFORF3466", "sequence-type": "addgene-full", "addgene_id": "144942", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -82477,7 +87312,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 NSP1_nostop", "sequence-type": "addgene-full", "addgene_id": "168570", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -82506,7 +87344,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK18_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158180", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -82572,7 +87409,10 @@ "plasmid_name": "pDONR223_BFP", "sequence-type": "depositor-full", "addgene_id": "25891", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "att_sites": [ "attL1", @@ -82605,7 +87445,10 @@ "plasmid_name": "TFORF3524", "sequence-type": "depositor-full", "addgene_id": "145000", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -82665,7 +87508,10 @@ "plasmid_name": "pDONR221_SLC15A3", "sequence-type": "addgene-full", "addgene_id": "131898", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -82696,7 +87542,10 @@ "plasmid_name": "SITS-EGFP-ccdb", "sequence-type": "addgene-full", "addgene_id": "118628", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -82750,7 +87599,10 @@ "plasmid_name": "pDONR223_AKT1_p.E17K", "sequence-type": "addgene-full", "addgene_id": "81459", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -82783,7 +87635,10 @@ "plasmid_name": "JN607: pMVP/SB-DEST", "sequence-type": "addgene-full", "addgene_id": "121860", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -82816,7 +87671,10 @@ "plasmid_name": "pGC155", "sequence-type": "depositor-full", "addgene_id": "19671", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR3", @@ -82853,7 +87711,10 @@ "plasmid_name": "pLX302-DUSP19-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87772", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "att_sites": [ "attB1", @@ -82913,7 +87774,6 @@ "plasmid_name": "R777-E202 Hs.PRKAG2-nostop", "sequence-type": "depositor-full", "addgene_id": "70486", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -82941,7 +87801,10 @@ "plasmid_name": "MS2_GFP", "sequence-type": "addgene-full", "addgene_id": "61764", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.03939", + "https://www.ncbi.nlm.nih.gov/pubmed/25271374" + ], "kit": null, "att_sites": [ "attB1", @@ -82985,7 +87848,10 @@ "plasmid_name": "pLew90\u03b2-GW/T7/PARP SAS/luciferase/Aldolase 3\u2032UTR", "sequence-type": "depositor-full", "addgene_id": "48157", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pntd.0000740", + "https://www.ncbi.nlm.nih.gov/pubmed/20644616" + ], "kit": null, "att_sites": [ "attB1", @@ -83022,7 +87888,10 @@ "plasmid_name": "pAG414GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14335", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -83084,7 +87953,6 @@ "plasmid_name": "pSCM167-Venus-VF-hSFRP1(aa53-169)", "sequence-type": "addgene-full", "addgene_id": "189546", - "references": [], "kit": null, "file": "data/addgene_plasmids/189546.addgene-full.gb" }, @@ -83093,7 +87961,10 @@ "plasmid_name": "pDONR221-SLC25A36_STOP", "sequence-type": "addgene-full", "addgene_id": "161195", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -83125,7 +87996,9 @@ "plasmid_name": "pUB-sSypHer (RbcS-SypHer)", "sequence-type": "addgene-full", "addgene_id": "84732", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "att_sites": [ "attB1", @@ -83162,7 +88035,10 @@ "plasmid_name": "pEBTetD-SNAP-FOP", "sequence-type": "addgene-full", "addgene_id": "136797", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -83208,7 +88084,10 @@ "plasmid_name": "pEBTet-SNAP-Cep128", "sequence-type": "addgene-full", "addgene_id": "136823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -83255,7 +88134,10 @@ "plasmid_name": "pENTR pA L3-L2", "sequence-type": "depositor-full", "addgene_id": "43966", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "att_sites": [ "attL2", @@ -83287,7 +88169,10 @@ "plasmid_name": "pDONR221_SLC25A46", "sequence-type": "addgene-full", "addgene_id": "131971", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -83318,7 +88203,10 @@ "plasmid_name": "TFORF3308", "sequence-type": "addgene-full", "addgene_id": "144784", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -83378,7 +88266,10 @@ "plasmid_name": "TFORF3354", "sequence-type": "addgene-full", "addgene_id": "144830", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -83438,7 +88329,10 @@ "plasmid_name": "pDONR223-MCU-D261A", "sequence-type": "depositor-full", "addgene_id": "31729", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "att_sites": [ "attL1", @@ -83467,7 +88361,10 @@ "plasmid_name": "pHAGE-EGFR-S768I", "sequence-type": "addgene-full", "addgene_id": "116304", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -83521,7 +88418,10 @@ "plasmid_name": "Ad-MKP-3 C293S", "sequence-type": "addgene-full", "addgene_id": "131525", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "att_sites": [ "attB1", @@ -83557,7 +88457,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF7a", "sequence-type": "addgene-full", "addgene_id": "168856", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -83586,7 +88489,10 @@ "plasmid_name": "459 pME-etv2", "sequence-type": "depositor-full", "addgene_id": "49002", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "att_sites": [ "attL1", @@ -83617,7 +88523,10 @@ "plasmid_name": "TFORF2988", "sequence-type": "addgene-full", "addgene_id": "144464", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -83677,7 +88586,10 @@ "plasmid_name": "p3E-CaaX(tK)", "sequence-type": "addgene-full", "addgene_id": "109540", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -83711,7 +88623,10 @@ "plasmid_name": "pDONR223_PTEN_p.G127R", "sequence-type": "addgene-full", "addgene_id": "81650", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -83743,7 +88658,6 @@ "plasmid_name": "p667-UBC-SCYL2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189912", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -83809,7 +88723,10 @@ "plasmid_name": "pGLTR-S-PURO", "sequence-type": "depositor-full", "addgene_id": "58244", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "att_sites": [ "attR1", @@ -83865,7 +88782,10 @@ "plasmid_name": "pDONR221-SLC35F3_STOP", "sequence-type": "addgene-full", "addgene_id": "161275", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -83896,7 +88816,10 @@ "plasmid_name": "pCellFree_G01", "sequence-type": "depositor-full", "addgene_id": "67135", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "att_sites": [ "attR1", @@ -83933,7 +88856,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP8", "sequence-type": "addgene-full", "addgene_id": "154407", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -83963,7 +88889,10 @@ "plasmid_name": "pENT-L1-Kozak-Ensconsin-3XGFP-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186361", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL1", @@ -83997,7 +88926,10 @@ "plasmid_name": "pGWT35S-mCherry-NLS", "sequence-type": "addgene-full", "addgene_id": "194049", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "att_sites": [ "attB1", @@ -84099,7 +89031,10 @@ "plasmid_name": "MAC_N_COMMD9", "sequence-type": "addgene-full", "addgene_id": "209681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -84144,7 +89079,10 @@ "plasmid_name": "pDONR221_mmIrf1 (closed)", "sequence-type": "addgene-full", "addgene_id": "160097", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attL1", @@ -84175,7 +89113,10 @@ "plasmid_name": "pGP4G-REL2N91-ccdB", "sequence-type": "addgene-full", "addgene_id": "188444", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attR1", @@ -84219,7 +89160,10 @@ "plasmid_name": "pSelAct-KO", "sequence-type": "addgene-full", "addgene_id": "174374", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-07-21-0171-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/34890250" + ], "kit": null, "att_sites": [ "attR1", @@ -84265,7 +89209,9 @@ "plasmid_name": "pKC-4.06", "sequence-type": "addgene-full", "addgene_id": "112084", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29528287" + ], "kit": null, "file": "data/addgene_plasmids/112084.addgene-full.gb" }, @@ -84274,7 +89220,10 @@ "plasmid_name": "pDONR223_TP53_p.P278T", "sequence-type": "addgene-full", "addgene_id": "82762", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -84304,7 +89253,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp10", "sequence-type": "addgene-full", "addgene_id": "168919", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -84333,7 +89285,10 @@ "plasmid_name": "pMXs-GLIS1 (FLJ33315SAAN)", "sequence-type": "depositor-full", "addgene_id": "33274", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10106", + "https://www.ncbi.nlm.nih.gov/pubmed/21654807" + ], "kit": null, "att_sites": [ "attB1", @@ -84361,7 +89316,10 @@ "plasmid_name": "pSLIK_hygro_BirA_CDKN1A", "sequence-type": "addgene-full", "addgene_id": "136538", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attB1", @@ -84428,7 +89386,10 @@ "plasmid_name": "KZ901: pMVP (L3-L2) P2A-eGFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121772", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -84467,7 +89428,10 @@ "plasmid_name": "pENTR-MPP1", "sequence-type": "addgene-full", "addgene_id": "221428", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -84497,7 +89461,10 @@ "plasmid_name": "pGP4GY-cccdB", "sequence-type": "depositor-full", "addgene_id": "83878", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1324147111", + "https://www.ncbi.nlm.nih.gov/pubmed/24979769" + ], "kit": null, "att_sites": [ "attR1", @@ -84543,7 +89510,10 @@ "plasmid_name": "pAFMW-Nbr[C399-625]-Gwpep(Dm)", "sequence-type": "addgene-full", "addgene_id": "188590", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -84573,7 +89543,10 @@ "plasmid_name": "pSAM2_mCherry_Mesp2", "sequence-type": "addgene-full", "addgene_id": "72693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -84636,7 +89609,9 @@ "plasmid_name": "pDONR221-MAVS(v1)", "sequence-type": "addgene-full", "addgene_id": "166188", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -84667,7 +89642,10 @@ "plasmid_name": "TFORF3174", "sequence-type": "addgene-full", "addgene_id": "144650", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -84728,7 +89706,10 @@ "plasmid_name": "pDONR223_CASP8_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82999", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -84757,7 +89738,10 @@ "plasmid_name": "pDONR223_CDK17_p.R177H", "sequence-type": "addgene-full", "addgene_id": "81464", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -84789,7 +89773,10 @@ "plasmid_name": "pDONR223_RBM11_WT", "sequence-type": "addgene-full", "addgene_id": "81784", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -84801,7 +89788,10 @@ "plasmid_name": "pAWH-largeT", "sequence-type": "addgene-full", "addgene_id": "133895", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attB1", @@ -84848,7 +89838,10 @@ "plasmid_name": "pLenti CMV Blast DEST (706-1)", "sequence-type": "addgene-full", "addgene_id": "17451", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -84913,7 +89906,10 @@ "plasmid_name": "pDONR223_SMAD2_WT", "sequence-type": "addgene-full", "addgene_id": "81830", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -84945,7 +89941,10 @@ "plasmid_name": "pHAGE-BRAF-A598_T599delinsA", "sequence-type": "addgene-full", "addgene_id": "116130", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116130.addgene-full.gb" }, @@ -84954,7 +89953,10 @@ "plasmid_name": "pMOS030E: Entry vector for: ratiometric pHluorin (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163071", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -84988,7 +89990,10 @@ "plasmid_name": "actc1b- mKate2-KDEL-pA", "sequence-type": "addgene-full", "addgene_id": "109494", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -85027,7 +90032,6 @@ "plasmid_name": "R777-E278 Hs.RHOA-nostop", "sequence-type": "depositor-full", "addgene_id": "70562", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -85039,7 +90043,10 @@ "plasmid_name": "pUBQ10:WNFLS2-1", "sequence-type": "addgene-full", "addgene_id": "202189", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "att_sites": [ "attB1", @@ -85085,7 +90092,10 @@ "plasmid_name": "pDONR221-SLC16A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161065", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -85116,7 +90126,6 @@ "plasmid_name": "R777-E345 Hs.TFDP2", "sequence-type": "depositor-full", "addgene_id": "70629", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -85144,7 +90153,10 @@ "plasmid_name": "pDONR223_PPP2R1A_p.S143F", "sequence-type": "addgene-full", "addgene_id": "81440", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -85177,7 +90189,10 @@ "plasmid_name": "actb2-lifeact-mKate2", "sequence-type": "addgene-full", "addgene_id": "109750", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -85219,7 +90234,10 @@ "plasmid_name": "TFORF3198", "sequence-type": "addgene-full", "addgene_id": "144674", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -85279,7 +90297,10 @@ "plasmid_name": "pMP71-hPDL-1", "sequence-type": "addgene-full", "addgene_id": "118631", - "references": [], + "references": [ + "https://doi.org/10.1158/2326-6066.CIR-18-0351", + "https://www.ncbi.nlm.nih.gov/pubmed/30659053" + ], "kit": null, "att_sites": [ "attB1", @@ -85315,7 +90336,10 @@ "plasmid_name": "pDONR221_MFSD14B", "sequence-type": "addgene-full", "addgene_id": "131881", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -85346,7 +90370,10 @@ "plasmid_name": "plenti-UBC-Myc-gate-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107395", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attR1", @@ -85410,7 +90437,9 @@ "plasmid_name": "pAG415GPD-EGFP", "sequence-type": "addgene-full", "addgene_id": "166137", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attB1", @@ -85466,7 +90495,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST NET1A S46A", "sequence-type": "depositor-full", "addgene_id": "69818", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "att_sites": [ "attB1", @@ -85516,7 +90548,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP16_nostop", "sequence-type": "addgene-full", "addgene_id": "149318", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -85545,7 +90580,6 @@ "plasmid_name": "pREP3xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79021", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -85590,7 +90624,10 @@ "plasmid_name": "pHAGE-ARAF-R188H", "sequence-type": "addgene-full", "addgene_id": "116114", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -85644,7 +90681,10 @@ "plasmid_name": "TFORF3118", "sequence-type": "addgene-full", "addgene_id": "144594", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -85704,7 +90744,10 @@ "plasmid_name": "pMOS014: Grx1-roGFP2 glutathione redox sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163055", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -85767,7 +90810,10 @@ "plasmid_name": "pDONR223_ROGDI_WT", "sequence-type": "addgene-full", "addgene_id": "81814", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -85799,7 +90845,10 @@ "plasmid_name": "pCFJ594 - pENTR[1-2](NeoR)", "sequence-type": "depositor-full", "addgene_id": "34878", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attL1", @@ -85835,7 +90884,10 @@ "plasmid_name": "pDONR221-SLC6A18_STOP", "sequence-type": "addgene-full", "addgene_id": "161385", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -85866,7 +90918,10 @@ "plasmid_name": "pAAV2-CMV-GFP-BGHpA", "sequence-type": "addgene-full", "addgene_id": "190239", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "att_sites": [ "attB1", @@ -85904,7 +90959,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189879", - "references": [], "kit": null, "file": "data/addgene_plasmids/189879.addgene-full.gb" }, @@ -85913,7 +90967,10 @@ "plasmid_name": "pMuLE ENTR eGFP L5-L2", "sequence-type": "depositor-full", "addgene_id": "62183", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -85949,7 +91006,10 @@ "plasmid_name": "A1-LCD-10R+10K", "sequence-type": "addgene-full", "addgene_id": "178671", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -85984,7 +91044,10 @@ "plasmid_name": "pAG424GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14367", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -86045,7 +91108,10 @@ "plasmid_name": "pMpGE_En03-sgRNA-Target1 (MpRTN1)", "sequence-type": "addgene-full", "addgene_id": "186291", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.15787", + "https://www.ncbi.nlm.nih.gov/pubmed/35476214" + ], "kit": null, "file": "data/addgene_plasmids/186291.addgene-full.gb" }, @@ -86054,7 +91120,10 @@ "plasmid_name": "pLEX307-HCoV-NL63-3CL-C144A", "sequence-type": "addgene-full", "addgene_id": "160287", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -86114,7 +91183,9 @@ "plasmid_name": "pMpGWB435", "sequence-type": "depositor-full", "addgene_id": "68700", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -86164,7 +91235,10 @@ "plasmid_name": "pTKan-p35S::Csy4-pC4H::cogGFP (C44, JBEI-16338)", "sequence-type": "addgene-full", "addgene_id": "110144", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.6b00295", + "https://www.ncbi.nlm.nih.gov/pubmed/28094975" + ], "kit": null, "att_sites": [ "attB1", @@ -86220,7 +91294,10 @@ "plasmid_name": "pYPQ146", "sequence-type": "depositor-full", "addgene_id": "69298", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL2", @@ -86252,7 +91329,10 @@ "plasmid_name": "pGWB404", "sequence-type": "depositor-full", "addgene_id": "74798", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -86303,7 +91383,10 @@ "plasmid_name": "pDONR223_TPK1_WT", "sequence-type": "addgene-full", "addgene_id": "82926", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -86332,7 +91415,10 @@ "plasmid_name": "pMSCV_IRES_GFP_CD16a", "sequence-type": "addgene-full", "addgene_id": "196189", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2023.102224", + "https://www.ncbi.nlm.nih.gov/pubmed/37071532" + ], "kit": null, "att_sites": [ "attB1", @@ -86380,7 +91466,10 @@ "plasmid_name": "KH101: pMVP (L3-L2) HA epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121756", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -86415,7 +91504,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND L370G", "sequence-type": "addgene-full", "addgene_id": "169970", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -86446,7 +91538,10 @@ "plasmid_name": "UBE2LB_pLX307", "sequence-type": "addgene-full", "addgene_id": "98380", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -86506,7 +91601,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF8", "sequence-type": "addgene-full", "addgene_id": "154423", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -86536,7 +91634,10 @@ "plasmid_name": "pME-mScarlet-NS", "sequence-type": "addgene-full", "addgene_id": "140874", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -86568,7 +91669,10 @@ "plasmid_name": "MLKS2del4ec", "sequence-type": "addgene-full", "addgene_id": "130857", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "att_sites": [ "attL1", @@ -86602,7 +91706,10 @@ "plasmid_name": "pDONR223_FCGR3B_p.L218P", "sequence-type": "addgene-full", "addgene_id": "82746", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -86631,7 +91738,10 @@ "plasmid_name": "JDW 771 (pTol2-kdrl:EYFP-hsKRAS4B-WT-ac/Y)", "sequence-type": "addgene-full", "addgene_id": "156413", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -86675,7 +91785,10 @@ "plasmid_name": "pTALdNC-AAVS1_T2", "sequence-type": "addgene-full", "addgene_id": "80496", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "att_sites": [ "attL1", @@ -86702,7 +91815,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-205", "sequence-type": "depositor-full", "addgene_id": "46679", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -86752,7 +91868,9 @@ "plasmid_name": "pLV-EF1a-CRISPRoffv2.1-IRES-BlastR", "sequence-type": "addgene-full", "addgene_id": "207180", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "att_sites": [ "attB1", @@ -86807,7 +91925,10 @@ "plasmid_name": "pMEtmem88aP1gfp", "sequence-type": "depositor-full", "addgene_id": "90132", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL1", @@ -86844,7 +91965,10 @@ "plasmid_name": "pGWB445", "sequence-type": "depositor-full", "addgene_id": "74831", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -86897,7 +92021,6 @@ "plasmid_name": "pLenti6.3/Capsid", "sequence-type": "addgene-full", "addgene_id": "120834", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -86956,7 +92079,10 @@ "plasmid_name": "pDONR221_SLC10A5", "sequence-type": "addgene-full", "addgene_id": "131955", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -86987,7 +92113,10 @@ "plasmid_name": "pAG305GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14329", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -87046,7 +92175,10 @@ "plasmid_name": "pHAGE-EPHA2-G391R", "sequence-type": "addgene-full", "addgene_id": "116320", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -87096,7 +92228,10 @@ "plasmid_name": "MiniCoopR mitfa:SPRED1", "sequence-type": "addgene-full", "addgene_id": "118851", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -87134,7 +92269,10 @@ "plasmid_name": "TFORF3338", "sequence-type": "addgene-full", "addgene_id": "144814", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -87194,7 +92332,10 @@ "plasmid_name": "p3E-mVenus", "sequence-type": "depositor-full", "addgene_id": "67719", - "references": [], + "references": [ + "https://doi.org/10.3389/fncel.2015.00321", + "https://www.ncbi.nlm.nih.gov/pubmed/26379496" + ], "kit": null, "att_sites": [ "attL3", @@ -87229,7 +92370,10 @@ "plasmid_name": "pHPdestVenus", "sequence-type": "depositor-full", "addgene_id": "24568", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.20637", + "https://www.ncbi.nlm.nih.gov/pubmed/20506180" + ], "kit": null, "att_sites": [ "attR1", @@ -87273,7 +92417,10 @@ "plasmid_name": "pDONR223_MAPK7_p.D46N", "sequence-type": "addgene-full", "addgene_id": "82869", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -87302,7 +92449,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hADAM10(aa1-213)-GST", "sequence-type": "addgene-full", "addgene_id": "189562", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -87353,7 +92499,10 @@ "plasmid_name": "pDONR223_CHSY3_p.R350H", "sequence-type": "addgene-full", "addgene_id": "81594", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -87385,7 +92534,10 @@ "plasmid_name": "pEBTetD-SNAP-Centrin3", "sequence-type": "addgene-full", "addgene_id": "136807", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -87429,7 +92581,6 @@ "plasmid_name": "pCLX-RIP-mCherry", "sequence-type": "addgene-full", "addgene_id": "114310", - "references": [], "kit": null, "file": "data/addgene_plasmids/114310.addgene-full.gb" }, @@ -87438,7 +92589,6 @@ "plasmid_name": "R777-E016 Hs.BRAF-nostop", "sequence-type": "depositor-full", "addgene_id": "70300", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -87467,7 +92617,10 @@ "plasmid_name": "pDONR223_NRAS_p.Q61L", "sequence-type": "addgene-full", "addgene_id": "81674", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -87499,7 +92652,10 @@ "plasmid_name": "5'-3xFLAG Chtop+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212081", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -87539,7 +92695,10 @@ "plasmid_name": "pDONR221-SLC35F5_STOP", "sequence-type": "addgene-full", "addgene_id": "161251", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -87570,7 +92729,10 @@ "plasmid_name": "GAL4BD-VP16/pDON207", "sequence-type": "addgene-full", "addgene_id": "201230", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16234", + "https://www.ncbi.nlm.nih.gov/pubmed/37323061" + ], "kit": null, "att_sites": [ "attL1", @@ -87597,7 +92759,10 @@ "plasmid_name": "p3E-EHD1a", "sequence-type": "addgene-full", "addgene_id": "109564", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -87628,7 +92793,10 @@ "plasmid_name": "TFORF2964", "sequence-type": "addgene-full", "addgene_id": "144440", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -87688,7 +92856,10 @@ "plasmid_name": "pDONR221-ZNF518B", "sequence-type": "depositor-full", "addgene_id": "101567", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -87719,7 +92890,10 @@ "plasmid_name": "pCW-eGFP-SHLD2", "sequence-type": "addgene-full", "addgene_id": "114119", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "att_sites": [ "attB1", @@ -87777,7 +92951,10 @@ "plasmid_name": "pYPQ230-D156R (ttLbCas12a)", "sequence-type": "addgene-full", "addgene_id": "195366", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "att_sites": [ "attL1", @@ -87809,7 +92986,10 @@ "plasmid_name": "pLX_317-C7orf26v1", "sequence-type": "addgene-full", "addgene_id": "178537", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.12.005", + "https://www.ncbi.nlm.nih.gov/pubmed/35085500" + ], "kit": null, "att_sites": [ "attB1", @@ -87869,7 +93049,10 @@ "plasmid_name": "pDONR221-FLVCR1_STOP", "sequence-type": "addgene-full", "addgene_id": "161058", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -87900,7 +93083,10 @@ "plasmid_name": "pDONR223_NPDC1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82980", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -87929,7 +93115,10 @@ "plasmid_name": "JC001: pMVP/Ad/RGD-DEST", "sequence-type": "addgene-full", "addgene_id": "121844", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -87961,7 +93150,10 @@ "plasmid_name": "pGWB21_TaNAM-A1", "sequence-type": "addgene-full", "addgene_id": "124572", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "att_sites": [ "attB1", @@ -88006,7 +93198,10 @@ "plasmid_name": "pPN461", "sequence-type": "addgene-full", "addgene_id": "137877", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "att_sites": [ "attB1", @@ -88061,7 +93256,10 @@ "plasmid_name": "TFORF3173", "sequence-type": "addgene-full", "addgene_id": "144649", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -88121,7 +93319,10 @@ "plasmid_name": "MSCV-N-Flag-HA-IRES-PURO", "sequence-type": "addgene-full", "addgene_id": "41033", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attR1", @@ -88173,7 +93374,10 @@ "plasmid_name": "pUBQ10:WNFLS2-2", "sequence-type": "addgene-full", "addgene_id": "202190", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "att_sites": [ "attB1", @@ -88219,7 +93423,10 @@ "plasmid_name": "pMOS031E: Entry vector for: superecliptic pHluorin (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163068", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -88253,7 +93460,10 @@ "plasmid_name": "p16 GPS1", "sequence-type": "addgene-full", "addgene_id": "101083", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-017-0021-9", + "https://www.ncbi.nlm.nih.gov/pubmed/28970478" + ], "kit": null, "att_sites": [ "attB1", @@ -88300,7 +93510,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF7B_nostop", "sequence-type": "addgene-full", "addgene_id": "149325", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -88329,7 +93542,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF3a", "sequence-type": "depositor-full", "addgene_id": "168877", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -88358,7 +93574,10 @@ "plasmid_name": "pHAGE-BRAF-A404Cfs*9", "sequence-type": "addgene-full", "addgene_id": "116129", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -88413,7 +93632,10 @@ "plasmid_name": "pDONR223_TRIM55_WT", "sequence-type": "addgene-full", "addgene_id": "81829", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -88445,7 +93667,10 @@ "plasmid_name": "pEN_TTmiRc2_BirA", "sequence-type": "addgene-full", "addgene_id": "136521", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136521.addgene-full.gb" }, @@ -88454,7 +93679,10 @@ "plasmid_name": "pDONR221-SLC51B_STOP", "sequence-type": "addgene-full", "addgene_id": "161323", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -88485,7 +93713,10 @@ "plasmid_name": "FoRC.PGa", "sequence-type": "addgene-full", "addgene_id": "84584", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22984", + "https://www.ncbi.nlm.nih.gov/pubmed/27696669" + ], "kit": null, "att_sites": [ "attP1", @@ -88528,7 +93759,10 @@ "plasmid_name": "pDONR223_MAP4K3_p.Q473H", "sequence-type": "addgene-full", "addgene_id": "81706", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -88560,7 +93794,10 @@ "plasmid_name": "pLX304-DCK*-GW-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176289", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "att_sites": [ "attR1", @@ -88632,7 +93869,10 @@ "plasmid_name": "TFORF3056", "sequence-type": "addgene-full", "addgene_id": "144532", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -88692,7 +93932,6 @@ "plasmid_name": "R777-E246 Hs.RASGRP2-nostop", "sequence-type": "depositor-full", "addgene_id": "70530", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -88720,7 +93959,10 @@ "plasmid_name": "pAG306GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14283", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -88779,7 +94021,9 @@ "plasmid_name": "pDONR221-NCOA5", "sequence-type": "addgene-full", "addgene_id": "166191", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -88810,7 +94054,10 @@ "plasmid_name": "TFORF3490", "sequence-type": "addgene-full", "addgene_id": "144966", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -88870,7 +94117,10 @@ "plasmid_name": "PABPN1L", "sequence-type": "addgene-full", "addgene_id": "155807", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -88913,7 +94163,10 @@ "plasmid_name": "pAFMW-Nbr[C399-625]-Gwpep(Mm)", "sequence-type": "addgene-full", "addgene_id": "188589", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -88943,7 +94196,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP13_stop", "sequence-type": "addgene-full", "addgene_id": "168554", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -88972,7 +94228,6 @@ "plasmid_name": "pENTR-ABCC1_S769N_STOP", "sequence-type": "addgene-full", "addgene_id": "221431", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -89003,7 +94258,10 @@ "plasmid_name": "pLENTI CMV GFP-TREX1 G306A BLAST", "sequence-type": "addgene-full", "addgene_id": "164241", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2020.12.037", + "https://www.ncbi.nlm.nih.gov/pubmed/33476576" + ], "kit": null, "att_sites": [ "attB1" @@ -89065,7 +94323,6 @@ "plasmid_name": "pAM-35s-Slah3-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102385", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -89099,7 +94356,10 @@ "plasmid_name": "MAC3_C_VPS35L", "sequence-type": "addgene-full", "addgene_id": "209698", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -89143,7 +94403,10 @@ "plasmid_name": "pGWT35S-VN154", "sequence-type": "addgene-full", "addgene_id": "194050", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "att_sites": [ "attB1", @@ -89188,7 +94451,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mCherry-RfA", "sequence-type": "addgene-full", "addgene_id": "186378", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -89232,7 +94494,9 @@ "plasmid_name": "pME V5 mScarlet-I (JDW 1323)", "sequence-type": "addgene-full", "addgene_id": "224487", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -89268,7 +94532,10 @@ "plasmid_name": "pDONR-IAA31", "sequence-type": "depositor-full", "addgene_id": "83864", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -89299,7 +94566,10 @@ "plasmid_name": "pThy1-Autobow", "sequence-type": "addgene-full", "addgene_id": "45187", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2450", + "https://www.ncbi.nlm.nih.gov/pubmed/23817127" + ], "kit": null, "att_sites": [ "attB1", @@ -89339,7 +94609,10 @@ "plasmid_name": "pDONR223_PTPN12_p.E5G", "sequence-type": "addgene-full", "addgene_id": "81532", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -89371,7 +94644,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-Envelope", "sequence-type": "depositor-full", "addgene_id": "168839", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -89400,7 +94676,10 @@ "plasmid_name": "pDONR221-SLC11A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161117", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -89431,7 +94710,10 @@ "plasmid_name": "pHAGE-FGFR3-S249C", "sequence-type": "addgene-full", "addgene_id": "116386", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -89481,7 +94763,10 @@ "plasmid_name": "TFORF3230", "sequence-type": "addgene-full", "addgene_id": "144706", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -89541,7 +94826,10 @@ "plasmid_name": "actc1b-mKate2-rab32b", "sequence-type": "addgene-full", "addgene_id": "109622", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -89583,7 +94871,10 @@ "plasmid_name": "TFORF3353", "sequence-type": "addgene-full", "addgene_id": "144829", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -89643,7 +94934,10 @@ "plasmid_name": "pStart-C2", "sequence-type": "addgene-full", "addgene_id": "20345", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "att_sites": [ "attL1", @@ -89670,7 +94964,10 @@ "plasmid_name": "pDONR221_SLC25A23", "sequence-type": "addgene-full", "addgene_id": "131968", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -89701,7 +94998,10 @@ "plasmid_name": "p3E-APEX2", "sequence-type": "addgene-full", "addgene_id": "108894", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "att_sites": [ "attL3", @@ -89733,7 +95033,10 @@ "plasmid_name": "pME-nCas9n-P2A-TagBFP2-pA", "sequence-type": "addgene-full", "addgene_id": "176026", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -89771,7 +95074,10 @@ "plasmid_name": "pDONR223_ERBB2_p.S310F", "sequence-type": "addgene-full", "addgene_id": "82854", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -89800,7 +95106,10 @@ "plasmid_name": "pDONR221-kcnj14", "sequence-type": "addgene-full", "addgene_id": "173144", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -89831,7 +95140,10 @@ "plasmid_name": "Lenti-EFS-hTSC1-T2A-Bsd", "sequence-type": "addgene-full", "addgene_id": "193199", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.111990", + "https://www.ncbi.nlm.nih.gov/pubmed/36640300" + ], "kit": null, "att_sites": [ "attB1", @@ -89889,7 +95201,10 @@ "plasmid_name": "pCG142", "sequence-type": "depositor-full", "addgene_id": "17246", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL4", @@ -89920,7 +95235,10 @@ "plasmid_name": "CSNK1A1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98326", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -89980,7 +95298,9 @@ "plasmid_name": "pRS423-FjTAL(JBEI-15466)", "sequence-type": "addgene-full", "addgene_id": "87936", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27871334" + ], "kit": null, "att_sites": [ "attB1", @@ -90031,7 +95351,10 @@ "plasmid_name": "pDONR223_STK19_p.E88K", "sequence-type": "addgene-full", "addgene_id": "81649", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90063,7 +95386,9 @@ "plasmid_name": "p5E-elavl3", "sequence-type": "addgene-full", "addgene_id": "82400", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL4", @@ -90098,7 +95423,10 @@ "plasmid_name": "p5E--3mnx1", "sequence-type": "depositor-full", "addgene_id": "74632", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -90132,7 +95460,10 @@ "plasmid_name": "pME-lamp1", "sequence-type": "addgene-full", "addgene_id": "109559", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -90163,7 +95494,10 @@ "plasmid_name": "pMLS640", "sequence-type": "addgene-full", "addgene_id": "188892", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "att_sites": [ "attB1", @@ -90196,7 +95530,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(TM-K206A)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128679", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -90246,7 +95583,10 @@ "plasmid_name": "pLenti GW-NL-myc", "sequence-type": "addgene-full", "addgene_id": "113455", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "att_sites": [ "attR1", @@ -90311,7 +95651,10 @@ "plasmid_name": "pENTR223-BFRF3", "sequence-type": "addgene-full", "addgene_id": "195778", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -90340,7 +95683,10 @@ "plasmid_name": "pDONR201-Eps8L2_494-546", "sequence-type": "addgene-full", "addgene_id": "196531", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attL1", @@ -90363,7 +95709,10 @@ "plasmid_name": "pDONR221-SFXN4_STOP", "sequence-type": "addgene-full", "addgene_id": "161446", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -90394,7 +95743,10 @@ "plasmid_name": "pME-MmCav1", "sequence-type": "addgene-full", "addgene_id": "170527", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64630", + "https://www.ncbi.nlm.nih.gov/pubmed/33904409" + ], "kit": null, "att_sites": [ "attL1", @@ -90425,7 +95777,9 @@ "plasmid_name": "pMpGWB109", "sequence-type": "depositor-full", "addgene_id": "68563", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -90472,7 +95826,10 @@ "plasmid_name": "pCFJ2369 - intron GG1 - 250bp", "sequence-type": "addgene-full", "addgene_id": "159877", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -90503,7 +95860,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.F182I", "sequence-type": "addgene-full", "addgene_id": "81383", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90535,7 +95895,10 @@ "plasmid_name": "pDONR223-EEF2K", "sequence-type": "addgene-full", "addgene_id": "23726", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -90567,7 +95930,10 @@ "plasmid_name": "pHAGE-PIK3CA-R818C", "sequence-type": "addgene-full", "addgene_id": "116537", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -90621,7 +95987,10 @@ "plasmid_name": "pDEST-DHFR F[1,2]-C (TRP1)", "sequence-type": "addgene-full", "addgene_id": "177795", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac045", + "https://www.ncbi.nlm.nih.gov/pubmed/35137167" + ], "kit": null, "att_sites": [ "attR1", @@ -90673,7 +96042,10 @@ "plasmid_name": "pDONR223-PDGFRA", "sequence-type": "addgene-full", "addgene_id": "23892", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -90705,7 +96077,10 @@ "plasmid_name": "pUBQ10-mNeonGreen-GW", "sequence-type": "addgene-full", "addgene_id": "209352", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -90745,7 +96120,10 @@ "plasmid_name": "pEN_TT 3XFLAG-S37A-GATA6-3XAU1_RNAi resistant", "sequence-type": "depositor-full", "addgene_id": "72924", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "att_sites": [ "attL1", @@ -90769,7 +96147,10 @@ "plasmid_name": "pEntr-Tbx5flbio", "sequence-type": "addgene-full", "addgene_id": "32968", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1016959108", + "https://www.ncbi.nlm.nih.gov/pubmed/21415370" + ], "kit": null, "att_sites": [ "attL1", @@ -90795,7 +96176,10 @@ "plasmid_name": "pDONR221_SLCO1C1", "sequence-type": "addgene-full", "addgene_id": "132224", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -90826,7 +96210,10 @@ "plasmid_name": "pTORGm43GWC", "sequence-type": "addgene-full", "addgene_id": "112903", - "references": [], + "references": [ + "https://doi.org/10.1186/s12866-019-1642-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31775609" + ], "kit": null, "att_sites": [ "attR3", @@ -90872,7 +96259,10 @@ "plasmid_name": "pDONR223_NRAS_WT", "sequence-type": "addgene-full", "addgene_id": "82151", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82151.addgene-full.gb" }, @@ -90881,7 +96271,10 @@ "plasmid_name": "pDest-686 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161889", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -90929,7 +96322,10 @@ "plasmid_name": "pDONR223_REG1A_p.E80K", "sequence-type": "addgene-full", "addgene_id": "81318", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90961,7 +96357,10 @@ "plasmid_name": "C413-E15: attB4-EF1p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162920", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -90996,7 +96395,10 @@ "plasmid_name": "pLgw NKX2-5-V5-EcoDam", "sequence-type": "addgene-full", "addgene_id": "98597", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attB1", @@ -91049,7 +96451,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 1-64)", "sequence-type": "addgene-full", "addgene_id": "119310", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -91101,7 +96506,10 @@ "plasmid_name": "pKH144_mCherry-YIPF4 WT", "sequence-type": "addgene-full", "addgene_id": "214972", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "att_sites": [ "attB1", @@ -91153,7 +96561,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS3", "sequence-type": "addgene-full", "addgene_id": "145355", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -91188,7 +96599,10 @@ "plasmid_name": "pPB-cT3G-cERP2-LHX1", "sequence-type": "addgene-full", "addgene_id": "192905", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192905.addgene-full.gb" }, @@ -91197,7 +96611,10 @@ "plasmid_name": "pEZYegfp", "sequence-type": "addgene-full", "addgene_id": "18671", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "att_sites": [ "attR1", @@ -91244,7 +96661,10 @@ "plasmid_name": "pCMU-MTUBr", "sequence-type": "depositor-full", "addgene_id": "61196", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -91290,7 +96710,10 @@ "plasmid_name": "pg-EGFP-HIF-2alpha", "sequence-type": "addgene-full", "addgene_id": "87207", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M113.500405", + "https://www.ncbi.nlm.nih.gov/pubmed/24394419" + ], "kit": null, "att_sites": [ "attB1", @@ -91332,7 +96755,6 @@ "plasmid_name": "Hs.KRAS4b R73K", "sequence-type": "depositor-full", "addgene_id": "83163", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -91358,7 +96780,10 @@ "plasmid_name": "pWZL Neo Myr Flag CDKN1B", "sequence-type": "addgene-full", "addgene_id": "20420", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -91399,7 +96824,10 @@ "plasmid_name": "pHAGE-TBC1D3B", "sequence-type": "addgene-full", "addgene_id": "116798", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -91449,7 +96877,10 @@ "plasmid_name": "pENTR221-SMAD3", "sequence-type": "addgene-full", "addgene_id": "79507", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -91481,7 +96912,10 @@ "plasmid_name": "pCW-GFP-CtIP", "sequence-type": "addgene-full", "addgene_id": "71109", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1", @@ -91540,7 +96974,10 @@ "plasmid_name": "pBullet-pm-n", "sequence-type": "depositor-full", "addgene_id": "53077", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -91577,7 +97014,10 @@ "plasmid_name": "pDONR221_SLC20A1", "sequence-type": "addgene-full", "addgene_id": "132010", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -91608,7 +97048,10 @@ "plasmid_name": "pCM5.36", "sequence-type": "depositor-full", "addgene_id": "19394", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -91639,7 +97082,10 @@ "plasmid_name": "pLX302_FOXA1-V5", "sequence-type": "addgene-full", "addgene_id": "70090", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.3419", + "https://www.ncbi.nlm.nih.gov/pubmed/26457646" + ], "kit": null, "att_sites": [ "attB1", @@ -91700,7 +97146,10 @@ "plasmid_name": "ph3b", "sequence-type": "depositor-full", "addgene_id": "32110", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1002161", + "https://www.ncbi.nlm.nih.gov/pubmed/21829355" + ], "kit": null, "att_sites": [ "attB2" @@ -91732,7 +97181,6 @@ "plasmid_name": "R777-E120 Hs.KSR2-nostop", "sequence-type": "depositor-full", "addgene_id": "70404", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -91760,7 +97208,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term SP100", "sequence-type": "addgene-full", "addgene_id": "187584", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -91804,7 +97255,10 @@ "plasmid_name": "pMuLE ENTR SV40 tdTomato L3-L2", "sequence-type": "depositor-full", "addgene_id": "62153", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -91842,7 +97296,10 @@ "plasmid_name": "221 pCS 3MT DEST", "sequence-type": "depositor-full", "addgene_id": "13070", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -91887,7 +97344,10 @@ "plasmid_name": "pHAGE-TGFBR2-V376M", "sequence-type": "addgene-full", "addgene_id": "116703", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -91938,7 +97398,10 @@ "plasmid_name": "pGAN230", "sequence-type": "addgene-full", "addgene_id": "131122", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/29056345" + ], "kit": null, "att_sites": [ "attR1", @@ -91992,7 +97455,6 @@ "plasmid_name": "p667-UBC-hcRed-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135239", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -92059,7 +97521,6 @@ "plasmid_name": "IDG_CLCC1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161672", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -92118,7 +97579,10 @@ "plasmid_name": "pDONR223_RHEB_WT", "sequence-type": "addgene-full", "addgene_id": "81257", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -92147,7 +97611,9 @@ "plasmid_name": "Shim_TrpRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202653", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "att_sites": [ "attB1", @@ -92186,7 +97652,10 @@ "plasmid_name": "GFP-TRIM33", "sequence-type": "addgene-full", "addgene_id": "65398", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -92239,7 +97708,10 @@ "plasmid_name": "pDONR221_SLC8A1", "sequence-type": "addgene-full", "addgene_id": "132162", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -92270,7 +97742,10 @@ "plasmid_name": "Flag-HA-LOC220594", "sequence-type": "addgene-full", "addgene_id": "22562", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -92315,7 +97790,10 @@ "plasmid_name": "pLenti PGK mKate2-OGT D554N (Puro)", "sequence-type": "addgene-full", "addgene_id": "154292", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "att_sites": [ "attB1", @@ -92377,7 +97855,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0530-luc2", "sequence-type": "addgene-full", "addgene_id": "214660", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -92423,7 +97904,10 @@ "plasmid_name": "pCW57.1 KBTBD4 WT", "sequence-type": "addgene-full", "addgene_id": "184624", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-022-00983-4", + "https://www.ncbi.nlm.nih.gov/pubmed/35379950" + ], "kit": null, "att_sites": [ "attB1", @@ -92478,7 +97962,10 @@ "plasmid_name": "pDONR223_SMAD5_WT", "sequence-type": "addgene-full", "addgene_id": "82217", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -92507,7 +97994,10 @@ "plasmid_name": "pB-Halo,IRES-eGFP", "sequence-type": "addgene-full", "addgene_id": "164519", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.10.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33080218" + ], "kit": null, "att_sites": [ "attR1", @@ -92574,7 +98064,10 @@ "plasmid_name": "pDONR221-MFSD12_STOP", "sequence-type": "depositor-full", "addgene_id": "161106", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -92606,7 +98099,10 @@ "plasmid_name": "MAC_N_ELK3", "sequence-type": "addgene-full", "addgene_id": "167750", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -92651,7 +98147,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_111del", "sequence-type": "depositor-full", "addgene_id": "65659", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -92696,7 +98195,10 @@ "plasmid_name": "GET1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176985", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -92748,7 +98250,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF8", "sequence-type": "addgene-full", "addgene_id": "169395", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -92791,7 +98292,10 @@ "plasmid_name": "pDONR221_UNC93A", "sequence-type": "addgene-full", "addgene_id": "132282", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -92823,7 +98327,10 @@ "plasmid_name": "pDONR221_SLC6A18", "sequence-type": "addgene-full", "addgene_id": "132219", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -92854,7 +98361,10 @@ "plasmid_name": "pHAGE-PIK3R1-G353R", "sequence-type": "addgene-full", "addgene_id": "116591", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -92905,7 +98415,10 @@ "plasmid_name": "pDONR223_GZMA_p.G210E", "sequence-type": "addgene-full", "addgene_id": "81325", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -92937,7 +98450,6 @@ "plasmid_name": "IDG_GPR89B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161700", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -92995,7 +98507,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MAPK15_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170581", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -93061,7 +98572,10 @@ "plasmid_name": "pmCellFree _KA2_ZIKV NS5", "sequence-type": "addgene-full", "addgene_id": "145368", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -93104,7 +98618,10 @@ "plasmid_name": "pLenti GW V5 Eco/Dam mse LaminA", "sequence-type": "addgene-full", "addgene_id": "182674", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.141028.112", + "https://www.ncbi.nlm.nih.gov/pubmed/23124521" + ], "kit": null, "att_sites": [ "attB1", @@ -93157,7 +98674,10 @@ "plasmid_name": "pJA252", "sequence-type": "depositor-full", "addgene_id": "21512", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "att_sites": [ "attL4", @@ -93188,7 +98708,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Lb", "sequence-type": "addgene-full", "addgene_id": "86197", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "att_sites": [ "attL2", @@ -93218,7 +98741,10 @@ "plasmid_name": "pENTR D-TOPO-C3_27", "sequence-type": "depositor-full", "addgene_id": "60270", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -93249,7 +98775,10 @@ "plasmid_name": "pHAGE-RET-V648I", "sequence-type": "addgene-full", "addgene_id": "116671", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -93303,7 +98832,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAP G116A", "sequence-type": "addgene-full", "addgene_id": "123098", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -93347,7 +98879,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS1B", "sequence-type": "depositor-full", "addgene_id": "20239", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "att_sites": [ "attB1", @@ -93380,7 +98915,10 @@ "plasmid_name": "MAC-tag-N", "sequence-type": "addgene-full", "addgene_id": "108078", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attR1", @@ -93430,7 +98968,10 @@ "plasmid_name": "mEos3-dnRac1", "sequence-type": "addgene-full", "addgene_id": "92040", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1409667112", + "https://www.ncbi.nlm.nih.gov/pubmed/25561548" + ], "kit": null, "att_sites": [ "attB1", @@ -93476,7 +99017,10 @@ "plasmid_name": "pHAGE-OXA1L-L57F", "sequence-type": "addgene-full", "addgene_id": "116445", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -93531,7 +99075,10 @@ "plasmid_name": "pDONR221 NLRP1 FIIND (F1079M-L1373) S1213A", "sequence-type": "addgene-full", "addgene_id": "166832", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -93562,7 +99109,10 @@ "plasmid_name": "pHAGE-CDC42BPB__SYNJ2BP", "sequence-type": "addgene-full", "addgene_id": "116811", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -93613,7 +99163,9 @@ "plasmid_name": "pFLIP42", "sequence-type": "depositor-full", "addgene_id": "65617", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -93651,7 +99203,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-wt", "sequence-type": "depositor-full", "addgene_id": "46703", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -93701,7 +99256,10 @@ "plasmid_name": "R989-X31-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) Q61L", "sequence-type": "addgene-full", "addgene_id": "159551", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -93748,7 +99306,10 @@ "plasmid_name": "mKate2-P2A-APEX2-2xFYVE_hrs", "sequence-type": "depositor-full", "addgene_id": "67663", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -93793,7 +99354,10 @@ "plasmid_name": "pENTR-L5-EGFP-L2", "sequence-type": "depositor-full", "addgene_id": "32593", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL2", @@ -93828,7 +99392,10 @@ "plasmid_name": "pAG303GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14253", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -93885,7 +99452,10 @@ "plasmid_name": "pUCIDT-attL1-Human ABeta-attR5", "sequence-type": "addgene-full", "addgene_id": "160436", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.3856", + "https://www.ncbi.nlm.nih.gov/pubmed/33659494" + ], "kit": null, "att_sites": [ "attL1", @@ -93919,7 +99489,10 @@ "plasmid_name": "pINDUCER dCas9-TET1CDMut", "sequence-type": "addgene-full", "addgene_id": "101920", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-017-0002-y", + "https://www.ncbi.nlm.nih.gov/pubmed/29203910" + ], "kit": null, "att_sites": [ "attB1", @@ -93979,7 +99552,6 @@ "plasmid_name": "pLEX307-DPP4-G418", "sequence-type": "addgene-full", "addgene_id": "158453", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -94039,7 +99611,10 @@ "plasmid_name": "pZmUBQ:AVRa1", "sequence-type": "addgene-full", "addgene_id": "132356", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0502-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31666804" + ], "kit": null, "att_sites": [ "attB1", @@ -94072,7 +99647,6 @@ "plasmid_name": "pLEX305_3xFLAG_RELA1", "sequence-type": "addgene-full", "addgene_id": "220324", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -94133,7 +99707,10 @@ "plasmid_name": "pWZL Neo Myr Flag FGFR1", "sequence-type": "addgene-full", "addgene_id": "20486", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -94175,7 +99752,10 @@ "plasmid_name": "pCAG/ATP11C-HA", "sequence-type": "addgene-full", "addgene_id": "209220", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -94221,7 +99801,6 @@ "plasmid_name": "p663-UBC-PM-miniTurbo-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214454", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -94284,7 +99863,10 @@ "plasmid_name": "pRU55", "sequence-type": "addgene-full", "addgene_id": "167684", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -94331,7 +99913,10 @@ "plasmid_name": "pME tdTomato-CAAX", "sequence-type": "addgene-full", "addgene_id": "135204", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13967", + "https://www.ncbi.nlm.nih.gov/pubmed/25470057" + ], "kit": null, "att_sites": [ "attL1", @@ -94363,7 +99948,10 @@ "plasmid_name": "pEBTetBl-CLIP-\u03b1-tubulin", "sequence-type": "addgene-full", "addgene_id": "136840", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -94408,7 +99996,9 @@ "plasmid_name": "pASZ-C-DM", "sequence-type": "addgene-full", "addgene_id": "111235", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25814554" + ], "kit": null, "att_sites": [ "attR1", @@ -94451,7 +100041,10 @@ "plasmid_name": "pHAGE-ESR1-E247K", "sequence-type": "addgene-full", "addgene_id": "116367", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116367.addgene-full.gb" }, @@ -94460,7 +100053,10 @@ "plasmid_name": "TFORF3377", "sequence-type": "addgene-full", "addgene_id": "144853", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -94520,7 +100116,10 @@ "plasmid_name": "pDONR221_SLC17A3", "sequence-type": "addgene-full", "addgene_id": "131912", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -94552,7 +100151,10 @@ "plasmid_name": "MAC_N_COMMD6", "sequence-type": "addgene-full", "addgene_id": "209679", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -94597,7 +100199,10 @@ "plasmid_name": "TFORF2931", "sequence-type": "addgene-full", "addgene_id": "144407", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -94657,7 +100262,10 @@ "plasmid_name": "actc1b-CD44a-mKate2", "sequence-type": "addgene-full", "addgene_id": "109523", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -94697,7 +100305,10 @@ "plasmid_name": "pDONR221-SLC25A14_STOP", "sequence-type": "addgene-full", "addgene_id": "161216", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161216.addgene-full.gb" }, @@ -94706,7 +100317,10 @@ "plasmid_name": "pDEST-CMV-polysite", "sequence-type": "addgene-full", "addgene_id": "122843", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attR1", @@ -94758,7 +100372,10 @@ "plasmid_name": "pDONR223_SNURF_p.M1I", "sequence-type": "addgene-full", "addgene_id": "81633", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -94790,7 +100407,10 @@ "plasmid_name": "pAG413GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14405", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -94852,7 +100472,10 @@ "plasmid_name": "pENTR-PKAKTRClover", "sequence-type": "depositor-full", "addgene_id": "59146", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attL1", @@ -94878,7 +100501,10 @@ "plasmid_name": "pAG305GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14162", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -94890,7 +100516,10 @@ "plasmid_name": "MAC-SARS-CoV-2 S", "sequence-type": "addgene-full", "addgene_id": "158371", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -94935,7 +100564,10 @@ "plasmid_name": "pMXs-Sox2-IP", "sequence-type": "addgene-full", "addgene_id": "15919", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.07.024", + "https://www.ncbi.nlm.nih.gov/pubmed/16904174" + ], "kit": null, "att_sites": [ "attB1", @@ -94969,7 +100601,10 @@ "plasmid_name": "pDONR221_SLC22A8", "sequence-type": "addgene-full", "addgene_id": "131989", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -95000,7 +100635,10 @@ "plasmid_name": "pEN_TT 3xFLAG-KPNB1", "sequence-type": "addgene-full", "addgene_id": "192301", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -95029,7 +100667,10 @@ "plasmid_name": "actc1b-mKate2-rab8b", "sequence-type": "addgene-full", "addgene_id": "109658", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -95071,7 +100712,10 @@ "plasmid_name": "pGP8GF-AtTIR1", "sequence-type": "addgene-full", "addgene_id": "188427", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attR2" @@ -95114,7 +100758,10 @@ "plasmid_name": "pDONR223_GPR156_p.R757L", "sequence-type": "addgene-full", "addgene_id": "81548", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -95146,7 +100793,10 @@ "plasmid_name": "TFORF3072", "sequence-type": "addgene-full", "addgene_id": "144548", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -95206,7 +100856,10 @@ "plasmid_name": "pDD382", "sequence-type": "addgene-full", "addgene_id": "91830", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "att_sites": [ "attB1", @@ -95245,7 +100898,10 @@ "plasmid_name": "pENTR-R4r-mCherry-R3r", "sequence-type": "depositor-full", "addgene_id": "32411", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32411.depositor-full.gb" }, @@ -95254,7 +100910,9 @@ "plasmid_name": "p3E-V5-mScarlet-I_SV40pA (JDW 968)", "sequence-type": "addgene-full", "addgene_id": "224529", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -95292,7 +100950,6 @@ "plasmid_name": "R777-E178 Hs.PIK3R4-nostop", "sequence-type": "depositor-full", "addgene_id": "70462", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -95320,7 +100977,10 @@ "plasmid_name": "pDONR221-SLC5A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161359", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -95351,7 +101011,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-irf2bpl C", "sequence-type": "addgene-full", "addgene_id": "89372", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -95405,7 +101068,10 @@ "plasmid_name": "MAC3-N-GFP", "sequence-type": "addgene-full", "addgene_id": "222602", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "file": "data/addgene_plasmids/222602.addgene-full.gb" }, @@ -95414,7 +101080,10 @@ "plasmid_name": "KU901: pMVP (L5-L4) eCFP", "sequence-type": "addgene-full", "addgene_id": "121711", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -95450,7 +101119,10 @@ "plasmid_name": "pDONR223_CETN3_WT", "sequence-type": "addgene-full", "addgene_id": "82961", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -95479,7 +101151,10 @@ "plasmid_name": "pLVX-HA-UBE3A-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107349", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "att_sites": [ "attB1", @@ -95529,7 +101204,10 @@ "plasmid_name": "pHAGE-EGFR-A289D", "sequence-type": "addgene-full", "addgene_id": "116228", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -95579,7 +101257,9 @@ "plasmid_name": "pDONR221-ECHS1", "sequence-type": "addgene-full", "addgene_id": "166170", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -95610,7 +101290,10 @@ "plasmid_name": "TFORF3157", "sequence-type": "addgene-full", "addgene_id": "144633", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -95670,7 +101353,10 @@ "plasmid_name": "p3E-rab5ab", "sequence-type": "addgene-full", "addgene_id": "109717", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -95701,7 +101387,10 @@ "plasmid_name": "pDEST 566-PHL2", "sequence-type": "addgene-full", "addgene_id": "118676", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -95746,7 +101435,10 @@ "plasmid_name": "pENTR221-IGFBP2-Clover", "sequence-type": "addgene-full", "addgene_id": "191007", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg1840", + "https://www.ncbi.nlm.nih.gov/pubmed/37436978" + ], "kit": null, "att_sites": [ "attL1", @@ -95780,7 +101472,10 @@ "plasmid_name": "pDONR223_IDH2_p.G137E", "sequence-type": "addgene-full", "addgene_id": "81407", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -95812,7 +101507,10 @@ "plasmid_name": "pENTR223-luciferase", "sequence-type": "addgene-full", "addgene_id": "198590", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -95843,7 +101541,10 @@ "plasmid_name": "p7133 pHAGE-P-CMVt-N-HA-GAW-PRKAR2B", "sequence-type": "addgene-full", "addgene_id": "100160", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -95895,7 +101596,10 @@ "plasmid_name": "pDONR221-rap1-K43-117-118R", "sequence-type": "addgene-full", "addgene_id": "84565", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.185793.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25800674" + ], "kit": null, "att_sites": [ "attL1", @@ -95924,7 +101628,10 @@ "plasmid_name": "pDONR223_PIK3IP1_WT", "sequence-type": "addgene-full", "addgene_id": "81853", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -95956,7 +101663,10 @@ "plasmid_name": "pEntry_HCoV-NL63-Membrane", "sequence-type": "depositor-full", "addgene_id": "168925", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -95985,7 +101695,10 @@ "plasmid_name": "pCLXEBR-pTF-hM3Dq", "sequence-type": "addgene-full", "addgene_id": "114283", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "att_sites": [ "attB1", @@ -96039,7 +101752,9 @@ "plasmid_name": "pPB-cT3G-cERP2-3xFLAG-SMAD1-active", "sequence-type": "addgene-full", "addgene_id": "222579", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -96086,7 +101801,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir16-1.2", "sequence-type": "depositor-full", "addgene_id": "46681", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -96136,7 +101854,10 @@ "plasmid_name": "pHAGE-BRAF-G469A", "sequence-type": "addgene-full", "addgene_id": "116153", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -96192,7 +101913,10 @@ "plasmid_name": "sox10:PDGFRA mutant", "sequence-type": "depositor-full", "addgene_id": "98697", - "references": [], + "references": [ + "https://doi.org/10.1038/onc.2016.269", + "https://www.ncbi.nlm.nih.gov/pubmed/27477693" + ], "kit": null, "att_sites": [ "attB1", @@ -96233,7 +101957,10 @@ "plasmid_name": "pDONR223_BRAF_p.H574N", "sequence-type": "addgene-full", "addgene_id": "82813", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -96263,7 +101990,10 @@ "plasmid_name": "pCAGImC_V5-CSNK1A1", "sequence-type": "depositor-full", "addgene_id": "92014", - "references": [], + "references": [ + "https://doi.org/10.1038/nature21025", + "https://www.ncbi.nlm.nih.gov/pubmed/28114302" + ], "kit": null, "att_sites": [ "attB1", @@ -96311,7 +102041,10 @@ "plasmid_name": "PB-TA-ERP2", "sequence-type": "addgene-full", "addgene_id": "80477", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "att_sites": [ "attR1", @@ -96371,7 +102104,10 @@ "plasmid_name": "pcDNA3.2/v5-DEST hGlut4", "sequence-type": "addgene-full", "addgene_id": "18087", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.09-146472", + "https://www.ncbi.nlm.nih.gov/pubmed/20354141" + ], "kit": null, "att_sites": [ "attB1", @@ -96422,7 +102158,10 @@ "plasmid_name": "pGWB-cLUC", "sequence-type": "addgene-full", "addgene_id": "174051", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1008933", + "https://www.ncbi.nlm.nih.gov/pubmed/32976518" + ], "kit": null, "att_sites": [ "attR1", @@ -96469,7 +102208,6 @@ "plasmid_name": "Human-Dysferlin-Original", "sequence-type": "depositor-full", "addgene_id": "60216", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -96501,7 +102239,10 @@ "plasmid_name": "PPIE_pLX307", "sequence-type": "addgene-full", "addgene_id": "98361", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98361.addgene-full.gb" }, @@ -96510,7 +102251,10 @@ "plasmid_name": "pLenti-PGK-Venus-Akaluc (neo)", "sequence-type": "addgene-full", "addgene_id": "124701", - "references": [], + "references": [ + "https://doi.org/10.1093/noajnl/vdaa134", + "https://www.ncbi.nlm.nih.gov/pubmed/33241215" + ], "kit": null, "att_sites": [ "attB1", @@ -96574,7 +102318,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.K57T", "sequence-type": "addgene-full", "addgene_id": "81695", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -96586,7 +102333,10 @@ "plasmid_name": "pDONR223_IDH1_WT", "sequence-type": "addgene-full", "addgene_id": "81921", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -96618,7 +102368,10 @@ "plasmid_name": "5'-3xFLAG Med24-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212060", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -96658,7 +102411,10 @@ "plasmid_name": "pMpGE011", "sequence-type": "depositor-full", "addgene_id": "71537", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0205117", + "https://www.ncbi.nlm.nih.gov/pubmed/30379827" + ], "kit": null, "att_sites": [ "attB1", @@ -96708,7 +102464,10 @@ "plasmid_name": "pAdCMV/V5-DEST-S727D-STAT3-3xFlag", "sequence-type": "addgene-full", "addgene_id": "99263", - "references": [], + "references": [ + "https://doi.org/10.1152/ajpcell.00235.2017", + "https://www.ncbi.nlm.nih.gov/pubmed/29351406" + ], "kit": null, "att_sites": [ "attB1", @@ -96745,7 +102504,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp1", "sequence-type": "addgene-full", "addgene_id": "168893", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -96774,7 +102536,10 @@ "plasmid_name": "p3E-Clta", "sequence-type": "addgene-full", "addgene_id": "109585", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -96805,7 +102570,10 @@ "plasmid_name": "p3E-rab11bb", "sequence-type": "addgene-full", "addgene_id": "109665", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -96836,7 +102604,10 @@ "plasmid_name": "TFORF3265", "sequence-type": "addgene-full", "addgene_id": "144741", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -96897,7 +102668,6 @@ "plasmid_name": "pHAGE mCherry-Rab11A", "sequence-type": "addgene-full", "addgene_id": "228035", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -96949,7 +102719,10 @@ "plasmid_name": "pLD-puro-Cc-CR-PARK7V51G-VA", "sequence-type": "addgene-full", "addgene_id": "115188", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attB1", @@ -97011,7 +102784,10 @@ "plasmid_name": "pDONR223_MAX_WT", "sequence-type": "addgene-full", "addgene_id": "82888", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -97041,7 +102817,10 @@ "plasmid_name": "pDONR221-SLC26A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161150", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -97072,7 +102851,10 @@ "plasmid_name": "sgTrack-Gateway", "sequence-type": "addgene-full", "addgene_id": "114011", - "references": [], + "references": [ + "https://doi.org/10.1038/s43018-020-0040-8", + "https://www.ncbi.nlm.nih.gov/pubmed/33345196" + ], "kit": null, "att_sites": [ "attR1", @@ -97140,7 +102922,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_UBA-mut", "sequence-type": "addgene-full", "addgene_id": "187146", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -97185,7 +102970,10 @@ "plasmid_name": "pENTR-R4R3-mRuby-N", "sequence-type": "depositor-full", "addgene_id": "113752", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -97220,7 +103008,10 @@ "plasmid_name": "pDONR223_WBSCR17_p.E289K", "sequence-type": "addgene-full", "addgene_id": "81575", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -97252,7 +103043,6 @@ "plasmid_name": "R777-E302 Hs.RPTOR-nostop", "sequence-type": "depositor-full", "addgene_id": "70586", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -97280,7 +103070,10 @@ "plasmid_name": "pEN41A-T10M", "sequence-type": "depositor-full", "addgene_id": "27365", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "att_sites": [ "attL4", @@ -97309,7 +103102,10 @@ "plasmid_name": "pEntry_HCoV-OC43-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168947", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -97338,7 +103134,10 @@ "plasmid_name": "pAG306GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14235", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -97394,7 +103193,10 @@ "plasmid_name": "TFORF3099", "sequence-type": "addgene-full", "addgene_id": "144575", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -97454,7 +103256,9 @@ "plasmid_name": "pMpGWB324", "sequence-type": "depositor-full", "addgene_id": "68652", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -97502,7 +103306,10 @@ "plasmid_name": "pDONR223_CDK4_WT", "sequence-type": "addgene-full", "addgene_id": "81741", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -97534,7 +103341,10 @@ "plasmid_name": "p5E-slc1a3b", "sequence-type": "addgene-full", "addgene_id": "170205", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-020-0703-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32895565" + ], "kit": null, "file": "data/addgene_plasmids/170205.addgene-full.gb" }, @@ -97543,7 +103353,10 @@ "plasmid_name": "pLgw Cbx1-V5-EcoDam", "sequence-type": "depositor-full", "addgene_id": "59211", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "att_sites": [ "attB1", @@ -97596,7 +103409,9 @@ "plasmid_name": "pME-3xNLS-(G2SG2)2-Cre (JDW 1149)", "sequence-type": "addgene-full", "addgene_id": "224514", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -97629,7 +103444,10 @@ "plasmid_name": "pDONR221-MPC1L_STOP", "sequence-type": "addgene-full", "addgene_id": "161084", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -97660,7 +103478,6 @@ "plasmid_name": "pGEX6P1-DEST", "sequence-type": "addgene-full", "addgene_id": "119749", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -97704,7 +103521,10 @@ "plasmid_name": "pDONR223_NKX2-1_DelCTerm_1-223AA", "sequence-type": "addgene-full", "addgene_id": "221476", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attL1", @@ -97733,7 +103553,10 @@ "plasmid_name": "pQLinkHD", "sequence-type": "depositor-full", "addgene_id": "13668", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkm067", + "https://www.ncbi.nlm.nih.gov/pubmed/17311810" + ], "kit": null, "att_sites": [ "attR1", @@ -97771,7 +103594,10 @@ "plasmid_name": "TFORF3219", "sequence-type": "addgene-full", "addgene_id": "144695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -97831,7 +103657,10 @@ "plasmid_name": "TFORF3445", "sequence-type": "addgene-full", "addgene_id": "144921", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -97891,7 +103720,10 @@ "plasmid_name": "plenti-UbcP-FLAG-CRBN-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107374", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -97950,7 +103782,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDKL4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158178", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -98016,7 +103847,10 @@ "plasmid_name": "CMYA5T2/pENTR3C", "sequence-type": "addgene-full", "addgene_id": "97409", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "att_sites": [ "attL1", @@ -98042,7 +103876,10 @@ "plasmid_name": "JN511: pMVP (L3-L2) pA; EF1a::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121803", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -98082,7 +103919,9 @@ "plasmid_name": "pPB-cT3G-cERP2-RBM46", "sequence-type": "addgene-full", "addgene_id": "222544", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -98128,7 +103967,6 @@ "plasmid_name": "p667-UBC-PXK-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189898", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -98194,7 +104032,10 @@ "plasmid_name": "pLX307/PTPN11", "sequence-type": "addgene-full", "addgene_id": "140941", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0209", + "https://www.ncbi.nlm.nih.gov/pubmed/31771968" + ], "kit": null, "att_sites": [ "attB1", @@ -98254,7 +104095,10 @@ "plasmid_name": "A1-LCD+23G-23S+7F-7Y", "sequence-type": "addgene-full", "addgene_id": "178690", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -98289,7 +104133,9 @@ "plasmid_name": "p5E-hPGK", "sequence-type": "depositor-full", "addgene_id": "82579", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL4", @@ -98317,7 +104163,9 @@ "plasmid_name": "p3E-GFPmem no-pA", "sequence-type": "depositor-full", "addgene_id": "80817", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80817.depositor-full.gb" }, @@ -98326,7 +104174,6 @@ "plasmid_name": "pLIX-REST", "sequence-type": "addgene-full", "addgene_id": "91896", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -98382,7 +104229,10 @@ "plasmid_name": "pENTR-NLS-actin-R62D", "sequence-type": "addgene-full", "addgene_id": "118381", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attL1", @@ -98414,7 +104264,10 @@ "plasmid_name": "pEntr_PE2", "sequence-type": "addgene-full", "addgene_id": "149548", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2021996118", + "https://www.ncbi.nlm.nih.gov/pubmed/33443210" + ], "kit": null, "att_sites": [ "attL1", @@ -98448,7 +104301,10 @@ "plasmid_name": "pHAGE-FLT1", "sequence-type": "addgene-full", "addgene_id": "116744", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -98502,7 +104358,10 @@ "plasmid_name": "pAG303GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14301", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -98561,7 +104420,10 @@ "plasmid_name": "pGWB425", "sequence-type": "depositor-full", "addgene_id": "74819", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -98609,7 +104471,10 @@ "plasmid_name": "pYPQ290-D570A", "sequence-type": "addgene-full", "addgene_id": "129673", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -98641,7 +104506,10 @@ "plasmid_name": "pDONR223_TBL1XR1_WT", "sequence-type": "addgene-full", "addgene_id": "82059", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -98673,7 +104541,6 @@ "plasmid_name": "IDG_GPR89A_OE_1", "sequence-type": "addgene-full", "addgene_id": "161635", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -98732,7 +104599,10 @@ "plasmid_name": "pDONR223-NTRK3", "sequence-type": "addgene-full", "addgene_id": "23901", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -98764,7 +104634,10 @@ "plasmid_name": "pTW328", "sequence-type": "addgene-full", "addgene_id": "115959", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "att_sites": [ "attP1", @@ -98801,7 +104674,10 @@ "plasmid_name": "SWEET11:SWEET11-2A-GFP-GUS", "sequence-type": "addgene-full", "addgene_id": "172484", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koaa060", + "https://www.ncbi.nlm.nih.gov/pubmed/33955487" + ], "kit": null, "att_sites": [ "attB1", @@ -98841,7 +104717,6 @@ "plasmid_name": "R777-E044 Hs.DUSP6-nostop", "sequence-type": "depositor-full", "addgene_id": "70328", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -98869,7 +104744,10 @@ "plasmid_name": "pLEX307-mFzd6", "sequence-type": "addgene-full", "addgene_id": "102868", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "att_sites": [ "attB1", @@ -98926,7 +104804,6 @@ "plasmid_name": "pCDNA3-hTLR4-VenusFlag", "sequence-type": "addgene-full", "addgene_id": "197640", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -98980,7 +104857,10 @@ "plasmid_name": "pDL201", "sequence-type": "addgene-full", "addgene_id": "175919", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175919.addgene-full.gb" }, @@ -98989,7 +104869,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-1", "sequence-type": "depositor-full", "addgene_id": "46651", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -99039,7 +104922,10 @@ "plasmid_name": "pDONR223_MAP3K14_WT", "sequence-type": "addgene-full", "addgene_id": "82322", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -99068,7 +104954,6 @@ "plasmid_name": "pDONR221-get1", "sequence-type": "addgene-full", "addgene_id": "192722", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -99099,7 +104984,10 @@ "plasmid_name": "pDONR221_SLC39A5", "sequence-type": "addgene-full", "addgene_id": "132057", - "references": [], + "references": [ + "https://doi.org/10.1007/s10534-022-00474-6", + "https://www.ncbi.nlm.nih.gov/pubmed/36454509" + ], "kit": null, "att_sites": [ "attL1", @@ -99130,7 +105018,10 @@ "plasmid_name": "pPB-cT3G-cERP2-GATA4", "sequence-type": "addgene-full", "addgene_id": "192896", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -99176,7 +105067,10 @@ "plasmid_name": "p8321 pDONR ATG-YAP1 S127A-Stop", "sequence-type": "addgene-full", "addgene_id": "184525", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "att_sites": [ "attL1", @@ -99205,7 +105099,10 @@ "plasmid_name": "pDONR223_ERRFI1_WT", "sequence-type": "addgene-full", "addgene_id": "82116", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -99234,7 +105131,10 @@ "plasmid_name": "SOD1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176964", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -99286,7 +105186,10 @@ "plasmid_name": "pGWB515", "sequence-type": "depositor-full", "addgene_id": "74857", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -99334,7 +105237,10 @@ "plasmid_name": "pDONR221_SLC25A19", "sequence-type": "addgene-full", "addgene_id": "132263", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -99365,7 +105271,10 @@ "plasmid_name": "GFP-BRD7", "sequence-type": "addgene-full", "addgene_id": "65379", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -99417,7 +105326,10 @@ "plasmid_name": "pcDNA5FRT/TO-AIRAPL-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113489", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -99461,7 +105373,10 @@ "plasmid_name": "pSGE_714_S2-1-gcm_dCP", "sequence-type": "depositor-full", "addgene_id": "71164", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -99494,7 +105409,10 @@ "plasmid_name": "pDONR221_SLC6A13", "sequence-type": "addgene-full", "addgene_id": "132183", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -99525,7 +105443,9 @@ "plasmid_name": "pLX317-RBFOX1", "sequence-type": "addgene-full", "addgene_id": "115442", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "att_sites": [ "attB1", @@ -99585,7 +105505,6 @@ "plasmid_name": "pLIX403-iRFP-ccdB-Puro", "sequence-type": "addgene-full", "addgene_id": "158566", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -99645,7 +105564,10 @@ "plasmid_name": "pENTR L3-4XmCherry-HA-L2", "sequence-type": "depositor-full", "addgene_id": "32315", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attL2", @@ -99678,7 +105600,10 @@ "plasmid_name": "pENTR-L1-PGK-TKBsd-L2", "sequence-type": "addgene-full", "addgene_id": "141009", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL1", @@ -99705,7 +105630,10 @@ "plasmid_name": "pENTR223-LF2", "sequence-type": "addgene-full", "addgene_id": "195810", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -99734,7 +105662,6 @@ "plasmid_name": "R777-E082 Hs.EXOC8-nostop", "sequence-type": "depositor-full", "addgene_id": "70366", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -99762,7 +105689,10 @@ "plasmid_name": "Flag-HA-USP43", "sequence-type": "addgene-full", "addgene_id": "22583", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -99807,7 +105737,6 @@ "plasmid_name": "pLenti6.2-ccdB-Firefly", "sequence-type": "addgene-full", "addgene_id": "87074", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -99872,7 +105801,10 @@ "plasmid_name": "C514-E67: attB5r-RU5u-Strep2x2-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162967", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -99902,7 +105834,10 @@ "plasmid_name": "pENTR_L1-miniTurbo-YFP-NLS-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127362", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127362.addgene-full.gb" }, @@ -99911,7 +105846,10 @@ "plasmid_name": "MSCVhyg-HA-FLAG_Ubc9_C93A", "sequence-type": "addgene-full", "addgene_id": "164937", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "att_sites": [ "attB1" @@ -99952,7 +105890,10 @@ "plasmid_name": "pT2-cryR;dusp5CE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90145", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -100000,7 +105941,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR", "sequence-type": "depositor-full", "addgene_id": "65091", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -100045,7 +105989,10 @@ "plasmid_name": "pTransposon.CAG.CasRX-P2A-Blast", "sequence-type": "addgene-full", "addgene_id": "212965", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-024-02190-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38409225" + ], "kit": null, "file": "data/addgene_plasmids/212965.addgene-full.gb" }, @@ -100054,7 +106001,10 @@ "plasmid_name": "BAP1", "sequence-type": "addgene-full", "addgene_id": "81024", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms8307", + "https://www.ncbi.nlm.nih.gov/pubmed/26095772" + ], "kit": null, "att_sites": [ "attB1", @@ -100103,7 +106053,10 @@ "plasmid_name": "pInducer20-Blast", "sequence-type": "addgene-full", "addgene_id": "109334", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.30473", + "https://www.ncbi.nlm.nih.gov/pubmed/29148972" + ], "kit": null, "file": "data/addgene_plasmids/109334.addgene-full.gb" }, @@ -100112,7 +106065,10 @@ "plasmid_name": "pDONR223 LC3C G126", "sequence-type": "addgene-full", "addgene_id": "123079", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -100141,7 +106097,10 @@ "plasmid_name": "pDONR221_SLC38A5", "sequence-type": "addgene-full", "addgene_id": "132118", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -100172,7 +106131,10 @@ "plasmid_name": "pBoPyV2a-S22", "sequence-type": "depositor-full", "addgene_id": "62356", - "references": [], + "references": [ + "https://doi.org/10.1099/vir.0.000033", + "https://www.ncbi.nlm.nih.gov/pubmed/25568187" + ], "kit": null, "att_sites": [ "attL1", @@ -100197,7 +106159,10 @@ "plasmid_name": "pHAGE-PIK3CD-G971R", "sequence-type": "addgene-full", "addgene_id": "116570", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116570.addgene-full.gb" }, @@ -100206,7 +106171,10 @@ "plasmid_name": "pDONR223-DYRK1B", "sequence-type": "addgene-full", "addgene_id": "23761", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -100238,7 +106206,10 @@ "plasmid_name": "pLV CMV-TERRA", "sequence-type": "depositor-full", "addgene_id": "111375", - "references": [], + "references": [ + "https://doi.org/10.3390/genes7080046", + "https://www.ncbi.nlm.nih.gov/pubmed/27537914" + ], "kit": null, "att_sites": [ "attB1", @@ -100295,7 +106266,10 @@ "plasmid_name": "pHAGE-PTCH1", "sequence-type": "addgene-full", "addgene_id": "116779", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -100349,7 +106323,6 @@ "plasmid_name": "R777-E272 Hs.RB1-nostop", "sequence-type": "depositor-full", "addgene_id": "70556", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -100377,7 +106350,9 @@ "plasmid_name": "pENTR4 CDS A. thaliana PHOT1", "sequence-type": "addgene-full", "addgene_id": "209187", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.09.25.558804" + ], "kit": null, "att_sites": [ "attL1", @@ -100402,7 +106377,9 @@ "plasmid_name": "pMpGWB417", "sequence-type": "depositor-full", "addgene_id": "68682", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68682.depositor-full.gb" }, @@ -100411,7 +106388,10 @@ "plasmid_name": "764 pME nls-mApple", "sequence-type": "addgene-full", "addgene_id": "195962", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL1", @@ -100445,7 +106425,6 @@ "plasmid_name": "p667-UBC-CDK12-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135243", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -100510,7 +106489,10 @@ "plasmid_name": "cARA12-mRFP", "sequence-type": "addgene-full", "addgene_id": "181961", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.360", + "https://www.ncbi.nlm.nih.gov/pubmed/34877448" + ], "kit": null, "att_sites": [ "attB1", @@ -100556,7 +106538,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-UD-S32", "sequence-type": "addgene-full", "addgene_id": "140302", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -100608,7 +106593,10 @@ "plasmid_name": "pSC31", "sequence-type": "addgene-full", "addgene_id": "104805", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -100652,7 +106640,6 @@ "plasmid_name": "pENTR-rtTA3G", "sequence-type": "addgene-full", "addgene_id": "139556", - "references": [], "kit": null, "file": "data/addgene_plasmids/139556.addgene-full.gb" }, @@ -100661,7 +106648,10 @@ "plasmid_name": "pHAGE-PIK3CA-H1047L", "sequence-type": "addgene-full", "addgene_id": "116499", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -100716,7 +106706,6 @@ "plasmid_name": "pSLIK DNM1L-V5 neo", "sequence-type": "addgene-full", "addgene_id": "220363", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -100784,7 +106773,10 @@ "plasmid_name": "pDONR221-SFXN1", "sequence-type": "addgene-full", "addgene_id": "132311", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -100815,7 +106807,10 @@ "plasmid_name": "MAC-TMPRSS4", "sequence-type": "addgene-full", "addgene_id": "172422", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -100861,7 +106856,6 @@ "plasmid_name": "IDG_KCNN1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161693", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -100919,7 +106913,6 @@ "plasmid_name": "pENTR3cDual-Wnk", "sequence-type": "addgene-full", "addgene_id": "203976", - "references": [], "kit": null, "file": "data/addgene_plasmids/203976.addgene-full.gb" }, @@ -100928,7 +106921,10 @@ "plasmid_name": "pLX317 TEAD2", "sequence-type": "addgene-full", "addgene_id": "193686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -100988,7 +106984,10 @@ "plasmid_name": "pDL202", "sequence-type": "addgene-full", "addgene_id": "175924", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -101012,7 +107011,6 @@ "plasmid_name": "pDest eGFP MBNL1 42 kDa", "sequence-type": "depositor-full", "addgene_id": "61277", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -101064,7 +107062,10 @@ "plasmid_name": "pMLS252", "sequence-type": "depositor-full", "addgene_id": "73720", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.184275", + "https://www.ncbi.nlm.nih.gov/pubmed/26837755" + ], "kit": null, "file": "data/addgene_plasmids/73720.depositor-full.gb" }, @@ -101073,7 +107074,10 @@ "plasmid_name": "pDONR221 Nog2", "sequence-type": "depositor-full", "addgene_id": "63764", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -101104,7 +107108,10 @@ "plasmid_name": "pSS02:cyt-Peredox-mCherry_DS", "sequence-type": "addgene-full", "addgene_id": "161747", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.20.00241", + "https://www.ncbi.nlm.nih.gov/pubmed/32796121" + ], "kit": null, "att_sites": [ "attB1", @@ -101149,7 +107156,6 @@ "plasmid_name": "R777-E234 Hs.RASAL1-nostop", "sequence-type": "depositor-full", "addgene_id": "70518", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -101177,7 +107183,10 @@ "plasmid_name": "pInducer 21-3xFlag-hMEFV-\u0394PLD", "sequence-type": "addgene-full", "addgene_id": "195479", - "references": [], + "references": [ + "https://doi.org/10.1038/s41419-023-05745-9", + "https://www.ncbi.nlm.nih.gov/pubmed/36966139" + ], "kit": null, "att_sites": [ "attB1", @@ -101234,7 +107243,10 @@ "plasmid_name": "pCSJ392", "sequence-type": "addgene-full", "addgene_id": "159722", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1908304116", + "https://www.ncbi.nlm.nih.gov/pubmed/31337681" + ], "kit": null, "att_sites": [ "attB1", @@ -101275,7 +107287,10 @@ "plasmid_name": "MAC_C_FGFR2", "sequence-type": "addgene-full", "addgene_id": "187751", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -101320,7 +107335,10 @@ "plasmid_name": "pDONR223_CYLC2_p.R71C", "sequence-type": "addgene-full", "addgene_id": "81362", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -101352,7 +107370,10 @@ "plasmid_name": "pENTR-R4R3-3xmRuby-N", "sequence-type": "addgene-full", "addgene_id": "113754", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -101387,7 +107408,10 @@ "plasmid_name": "pLCS107", "sequence-type": "addgene-full", "addgene_id": "209328", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -101427,7 +107451,10 @@ "plasmid_name": "MAC3-tag-C", "sequence-type": "addgene-full", "addgene_id": "185481", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attR1", @@ -101476,7 +107503,10 @@ "plasmid_name": "NCH1exp", "sequence-type": "addgene-full", "addgene_id": "131017", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "att_sites": [ "attB1", @@ -101512,7 +107542,10 @@ "plasmid_name": "pHAGE-PTEN-V166Sfs*14", "sequence-type": "addgene-full", "addgene_id": "116636", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -101567,7 +107600,10 @@ "plasmid_name": "pENTR-R4-H1-BsmBI-L2", "sequence-type": "addgene-full", "addgene_id": "141034", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -101591,7 +107627,10 @@ "plasmid_name": "GFP-BLOS1", "sequence-type": "addgene-full", "addgene_id": "164625", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "att_sites": [ "attB1", @@ -101643,7 +107682,10 @@ "plasmid_name": "pENTR223-BGLF3", "sequence-type": "addgene-full", "addgene_id": "195799", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -101672,7 +107714,10 @@ "plasmid_name": "pDONRCBX", "sequence-type": "depositor-full", "addgene_id": "29634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.fgb.2007.11.001", + "https://www.ncbi.nlm.nih.gov/pubmed/18248826" + ], "kit": null, "att_sites": [ "attP1", @@ -101700,7 +107745,10 @@ "plasmid_name": "pEnt L1L3 rtTA-3", "sequence-type": "depositor-full", "addgene_id": "27106", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "att_sites": [ "attL1", @@ -101732,7 +107780,10 @@ "plasmid_name": "pLX307 Luciferase", "sequence-type": "addgene-full", "addgene_id": "117734", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -101794,7 +107845,10 @@ "plasmid_name": "pCR8-Magneto2.0", "sequence-type": "depositor-full", "addgene_id": "74333", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4265", + "https://www.ncbi.nlm.nih.gov/pubmed/26950006" + ], "kit": null, "att_sites": [ "attL1", @@ -101825,7 +107879,10 @@ "plasmid_name": "pDONR223_DKK1_WT", "sequence-type": "addgene-full", "addgene_id": "82250", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -101854,7 +107911,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0395-luc2", "sequence-type": "addgene-full", "addgene_id": "214627", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -101898,7 +107958,10 @@ "plasmid_name": "pAC150-PBLHL-4xHS-EF1a-DEST", "sequence-type": "depositor-full", "addgene_id": "48234", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attR1", @@ -101955,7 +108018,10 @@ "plasmid_name": "pENTR-E2F1-PIP3A", "sequence-type": "depositor-full", "addgene_id": "37142", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2008.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19081076" + ], "kit": null, "att_sites": [ "attL1", @@ -101986,7 +108052,6 @@ "plasmid_name": "pHAGE-cDEST-APEX2", "sequence-type": "addgene-full", "addgene_id": "214993", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -102044,7 +108109,10 @@ "plasmid_name": "pDONR221_SLC30A10", "sequence-type": "addgene-full", "addgene_id": "132125", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132125.addgene-full.gb" }, @@ -102053,7 +108121,9 @@ "plasmid_name": "pDONR223-TAF5-FL_WobbleMut", "sequence-type": "addgene-full", "addgene_id": "209053", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attL1", @@ -102082,7 +108152,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NI_G1333-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171724", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attL1", @@ -102118,7 +108191,10 @@ "plasmid_name": "pGL2206", "sequence-type": "addgene-full", "addgene_id": "137047", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-9210-2_10", + "https://www.ncbi.nlm.nih.gov/pubmed/30980305" + ], "kit": null, "att_sites": [ "attL1", @@ -102150,7 +108226,6 @@ "plasmid_name": "CTNNB1 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216617", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -102180,7 +108255,9 @@ "plasmid_name": "piggyBac-rtTA (4th_Gen)-SNCA(A53T)-sfGFP-IRES-NGN2-puro (VK_1123)", "sequence-type": "addgene-full", "addgene_id": "209080", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.11.08.515615" + ], "kit": null, "att_sites": [ "attB1", @@ -102240,7 +108317,10 @@ "plasmid_name": "pYPQ202", "sequence-type": "addgene-full", "addgene_id": "86198", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "att_sites": [ "attR1", @@ -102287,7 +108367,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-3", "sequence-type": "depositor-full", "addgene_id": "46698", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -102337,7 +108420,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAP WT", "sequence-type": "addgene-full", "addgene_id": "123097", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -102381,7 +108467,10 @@ "plasmid_name": "pAd-PRL.Cre", "sequence-type": "addgene-full", "addgene_id": "192937", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "att_sites": [ "attB1", @@ -102416,7 +108505,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV NS4B", "sequence-type": "addgene-full", "addgene_id": "145367", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -102459,7 +108551,10 @@ "plasmid_name": "pAG426GPD-ccdB", "sequence-type": "addgene-full", "addgene_id": "14156", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -102520,7 +108615,10 @@ "plasmid_name": "C234-E08: attB2r-3xFLAG-attB3", "sequence-type": "addgene-full", "addgene_id": "162912", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -102550,7 +108648,10 @@ "plasmid_name": "pDONR221_SLC4A9", "sequence-type": "addgene-full", "addgene_id": "132216", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -102581,7 +108682,10 @@ "plasmid_name": "pMCS-GW", "sequence-type": "addgene-full", "addgene_id": "209360", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -102621,7 +108725,10 @@ "plasmid_name": "pAG304GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14135", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -102678,7 +108785,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NRF2", "sequence-type": "addgene-full", "addgene_id": "207811", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -102744,7 +108854,10 @@ "plasmid_name": "pHAGE-PIK3CA-K111delK", "sequence-type": "addgene-full", "addgene_id": "116505", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -102798,7 +108911,10 @@ "plasmid_name": "pCFJ2451 - [1-2] ENTR - Fluor - ce-tagBFP2(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159845", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -102829,7 +108945,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj13-T131A-EGFP", "sequence-type": "addgene-full", "addgene_id": "164942", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB1", @@ -102874,7 +108993,10 @@ "plasmid_name": "pDONR223_MOS_WT", "sequence-type": "addgene-full", "addgene_id": "82218", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -102903,7 +109025,10 @@ "plasmid_name": "pMEsheP1gfp", "sequence-type": "addgene-full", "addgene_id": "90130", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL1", @@ -102940,7 +109065,10 @@ "plasmid_name": "PB-TET", "sequence-type": "addgene-full", "addgene_id": "20909", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "att_sites": [ "attR1", @@ -102993,7 +109121,10 @@ "plasmid_name": "pDONR223_REG1A_p.S131I", "sequence-type": "addgene-full", "addgene_id": "81265", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -103005,7 +109136,6 @@ "plasmid_name": "IDG_KCND1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161640", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -103064,7 +109194,10 @@ "plasmid_name": "pDONR207-MUM2sp-RglB", "sequence-type": "addgene-full", "addgene_id": "170721", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcab077", + "https://www.ncbi.nlm.nih.gov/pubmed/34059917" + ], "kit": null, "att_sites": [ "attL1", @@ -103088,7 +109221,10 @@ "plasmid_name": "pLX313-TP53-WT", "sequence-type": "addgene-full", "addgene_id": "118014", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-018-0204-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30224644" + ], "kit": null, "att_sites": [ "attB1", @@ -103147,7 +109283,9 @@ "plasmid_name": "pRL055 pDESTattB_cryaa:Venus", "sequence-type": "addgene-full", "addgene_id": "213509", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.12.08.570868" + ], "kit": null, "att_sites": [ "attR3", @@ -103195,7 +109333,10 @@ "plasmid_name": "pHAGE-EGFR", "sequence-type": "addgene-full", "addgene_id": "116731", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -103249,7 +109390,10 @@ "plasmid_name": "pAD-CMV-STAT5A-CA-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83255", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "att_sites": [ "attB1", @@ -103292,7 +109436,10 @@ "plasmid_name": "MAC_C_COX14", "sequence-type": "addgene-full", "addgene_id": "111663", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -103337,7 +109484,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST LIN28B", "sequence-type": "depositor-full", "addgene_id": "43798", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.036491.112", + "https://www.ncbi.nlm.nih.gov/pubmed/23481595" + ], "kit": null, "att_sites": [ "attB1", @@ -103382,7 +109532,10 @@ "plasmid_name": "D. vulgaris Cascade/I-C (Cas5c-Cas8c-Cas7)/pHMGWA", "sequence-type": "addgene-full", "addgene_id": "81185", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2016.07.027", + "https://www.ncbi.nlm.nih.gov/pubmed/27588603" + ], "kit": null, "att_sites": [ "attB1", @@ -103425,7 +109578,10 @@ "plasmid_name": "pYPQ265F2", "sequence-type": "addgene-full", "addgene_id": "164722", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -103460,7 +109616,6 @@ "plasmid_name": "Hs.KRAS4b K104A", "sequence-type": "depositor-full", "addgene_id": "83152", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -103486,7 +109641,10 @@ "plasmid_name": "pHAGE-3FLAG-EEA1", "sequence-type": "addgene-full", "addgene_id": "176491", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "att_sites": [ "attB1", @@ -103538,7 +109696,10 @@ "plasmid_name": "pCPP5154", "sequence-type": "addgene-full", "addgene_id": "128704", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -103569,7 +109730,10 @@ "plasmid_name": "pDONR221_SLC20A2", "sequence-type": "addgene-full", "addgene_id": "132022", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -103600,7 +109764,10 @@ "plasmid_name": "pDONR221 DPP9S", "sequence-type": "addgene-full", "addgene_id": "166789", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -103632,7 +109799,6 @@ "plasmid_name": "R777-E151 Hs.PAK3", "sequence-type": "depositor-full", "addgene_id": "70435", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -103670,7 +109836,10 @@ "plasmid_name": "pAG415GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14386", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -103731,7 +109900,6 @@ "plasmid_name": "pTpPBR11_fcpNAT_GWB", "sequence-type": "addgene-full", "addgene_id": "154032", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -103768,7 +109936,10 @@ "plasmid_name": "pMuLE ENTR CMV PuroR R4-R3", "sequence-type": "depositor-full", "addgene_id": "62162", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -103804,7 +109975,10 @@ "plasmid_name": "MAC-tag-C", "sequence-type": "addgene-full", "addgene_id": "108077", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attR1", @@ -103854,7 +110028,10 @@ "plasmid_name": "pENTR-L3-Csy4-Cas9n-L2", "sequence-type": "addgene-full", "addgene_id": "141041", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -103884,7 +110061,10 @@ "plasmid_name": "pHAGE-PTPN11-G60R", "sequence-type": "addgene-full", "addgene_id": "116643", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -103938,7 +110118,10 @@ "plasmid_name": "DYRK1A_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53791", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "att_sites": [ "attB1", @@ -103978,7 +110161,10 @@ "plasmid_name": "pLgw EcoDam-V5-NKX2-5Y191C", "sequence-type": "addgene-full", "addgene_id": "98598", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attB1", @@ -104031,7 +110217,10 @@ "plasmid_name": "pFRT-TODestMYC_RBPMS2", "sequence-type": "depositor-full", "addgene_id": "65668", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -104075,7 +110264,10 @@ "plasmid_name": "pCZGY1584 Pcol-19::ebp-2::mGFP::unc-54 3'UTR", "sequence-type": "addgene-full", "addgene_id": "129774", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.15833", + "https://www.ncbi.nlm.nih.gov/pubmed/27661253" + ], "kit": null, "att_sites": [ "attB1", @@ -104110,7 +110302,10 @@ "plasmid_name": "pDL54", "sequence-type": "addgene-full", "addgene_id": "175885", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -104141,7 +110336,6 @@ "plasmid_name": "pCM1.107", "sequence-type": "depositor-full", "addgene_id": "19595", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -104172,7 +110366,9 @@ "plasmid_name": "pDONR207-Lifeact-Citrine", "sequence-type": "addgene-full", "addgene_id": "100590", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27703856" + ], "kit": null, "att_sites": [ "attL1", @@ -104201,7 +110397,10 @@ "plasmid_name": "pDest-667 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161886", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -104267,7 +110466,10 @@ "plasmid_name": "pDONR223_HIST1H3B_p.A48S", "sequence-type": "addgene-full", "addgene_id": "81317", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -104299,7 +110501,10 @@ "plasmid_name": "pDONR221-HES5", "sequence-type": "addgene-full", "addgene_id": "101409", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -104330,7 +110535,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS7", "sequence-type": "depositor-full", "addgene_id": "20246", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "att_sites": [ "attB1", @@ -104363,7 +110571,10 @@ "plasmid_name": "pDONR223-PFKL", "sequence-type": "addgene-full", "addgene_id": "23729", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -104396,7 +110607,10 @@ "plasmid_name": "pHAGE-PIK3CA-R88Q", "sequence-type": "addgene-full", "addgene_id": "116538", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -104451,7 +110665,10 @@ "plasmid_name": "pHAGE TRE dCas9-KRAB", "sequence-type": "addgene-full", "addgene_id": "50917", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.103341", + "https://www.ncbi.nlm.nih.gov/pubmed/24346702" + ], "kit": null, "att_sites": [ "attB1", @@ -104510,7 +110727,10 @@ "plasmid_name": "pCFJ2359 - intron GG2 - 250bp", "sequence-type": "addgene-full", "addgene_id": "159878", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -104541,7 +110761,10 @@ "plasmid_name": "MAC_N_IRF5", "sequence-type": "addgene-full", "addgene_id": "167762", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -104586,7 +110809,10 @@ "plasmid_name": "pDONR223_PRKCA_WT", "sequence-type": "addgene-full", "addgene_id": "82225", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attB1", @@ -104615,7 +110841,10 @@ "plasmid_name": "pGL4_EGR1p-BC1488-luc2", "sequence-type": "addgene-full", "addgene_id": "214652", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -104658,7 +110887,10 @@ "plasmid_name": "pENTR223-BCRF1(vIL10)", "sequence-type": "addgene-full", "addgene_id": "195777", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -104687,7 +110919,10 @@ "plasmid_name": "pME-MmCavin4", "sequence-type": "addgene-full", "addgene_id": "170528", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64630", + "https://www.ncbi.nlm.nih.gov/pubmed/33904409" + ], "kit": null, "att_sites": [ "attL1", @@ -104719,7 +110954,10 @@ "plasmid_name": "pDONR221-SLC27A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161449", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -104750,7 +110988,10 @@ "plasmid_name": "Flag-HA-OTUD7B", "sequence-type": "addgene-full", "addgene_id": "22550", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -104795,7 +111036,10 @@ "plasmid_name": "pDONR221-SLC4A5_STOP", "sequence-type": "depositor-full", "addgene_id": "161450", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -104826,7 +111070,10 @@ "plasmid_name": "pDONR221_SLC2A13", "sequence-type": "addgene-full", "addgene_id": "132150", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -104857,7 +111104,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(TM-KTM)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128676", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128676.addgene-full.gb" }, @@ -104866,7 +111116,6 @@ "plasmid_name": "DDX3X - Y466D in pENTR", "sequence-type": "addgene-full", "addgene_id": "216582", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -104895,7 +111144,10 @@ "plasmid_name": "Arabidopsis_thaliana _PheRS_DualTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202661", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "att_sites": [ "attB1", @@ -104934,7 +111186,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-WT-puro", "sequence-type": "addgene-full", "addgene_id": "156170", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -104994,7 +111249,6 @@ "plasmid_name": "p667-UBC-STK17A-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214466", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -105059,7 +111313,10 @@ "plasmid_name": "pCAG/ATP8B4-HA", "sequence-type": "addgene-full", "addgene_id": "209212", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -105105,7 +111362,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp7", "sequence-type": "depositor-full", "addgene_id": "168896", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -105134,7 +111394,10 @@ "plasmid_name": "pDONR223 LC3B no-stop", "sequence-type": "addgene-full", "addgene_id": "123205", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123205.addgene-full.gb" }, @@ -105143,7 +111406,10 @@ "plasmid_name": "pME-Cas9-T2A-GFP", "sequence-type": "addgene-full", "addgene_id": "63155", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.01.032", + "https://www.ncbi.nlm.nih.gov/pubmed/25752963" + ], "kit": null, "att_sites": [ "attL1", @@ -105183,7 +111449,6 @@ "plasmid_name": "pENTR-L4R1-hEF1a", "sequence-type": "addgene-full", "addgene_id": "139523", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -105217,7 +111482,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir193b-2", "sequence-type": "depositor-full", "addgene_id": "46732", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -105267,7 +111535,6 @@ "plasmid_name": "pLEX307-FURIN-blast", "sequence-type": "addgene-full", "addgene_id": "158461", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -105326,7 +111593,10 @@ "plasmid_name": "pDONR221_SLC36A1", "sequence-type": "addgene-full", "addgene_id": "132084", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -105357,7 +111627,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::RfA-CFP", "sequence-type": "addgene-full", "addgene_id": "186412", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -105405,7 +111678,10 @@ "plasmid_name": "R701-X55-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) G12V", "sequence-type": "addgene-full", "addgene_id": "159563", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -105452,7 +111728,10 @@ "plasmid_name": "pHAGE-STK33", "sequence-type": "addgene-full", "addgene_id": "116797", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -105502,7 +111781,10 @@ "plasmid_name": "pENTR221-sGFP", "sequence-type": "addgene-full", "addgene_id": "79508", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -105538,7 +111820,10 @@ "plasmid_name": "pHAGE-IDE__CAMK1D", "sequence-type": "addgene-full", "addgene_id": "116823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -105589,7 +111874,10 @@ "plasmid_name": "pAG413GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14262", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -105648,7 +111936,10 @@ "plasmid_name": "pDONR221-Ckb1", "sequence-type": "addgene-full", "addgene_id": "99981", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attL1", @@ -105679,7 +111970,10 @@ "plasmid_name": "pHAGE-PIK3CA-E542A", "sequence-type": "addgene-full", "addgene_id": "116477", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -105733,7 +112027,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF6", "sequence-type": "addgene-full", "addgene_id": "141275", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -105762,7 +112059,10 @@ "plasmid_name": "pMuLE ENTR MCS R4-R3", "sequence-type": "depositor-full", "addgene_id": "62086", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -105793,7 +112093,10 @@ "plasmid_name": "PB-TET-mcMyc", "sequence-type": "depositor-full", "addgene_id": "20888", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "att_sites": [ "attB1", @@ -105842,7 +112145,10 @@ "plasmid_name": "hsp70: mKate2-DN Kif5a", "sequence-type": "addgene-full", "addgene_id": "105972", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21206", + "https://www.ncbi.nlm.nih.gov/pubmed/26879757" + ], "kit": null, "att_sites": [ "attB1", @@ -105883,7 +112189,9 @@ "plasmid_name": "pMpGWB214", "sequence-type": "depositor-full", "addgene_id": "68605", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -105930,7 +112238,10 @@ "plasmid_name": "Proinsulin-NanoLuc in pLX304", "sequence-type": "addgene-full", "addgene_id": "62057", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/25565210" + ], "kit": null, "att_sites": [ "attB1", @@ -105990,7 +112301,10 @@ "plasmid_name": "pcDNA3.2/DEST/hTfR-HA", "sequence-type": "addgene-full", "addgene_id": "69610", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.111.257964", + "https://www.ncbi.nlm.nih.gov/pubmed/22328533" + ], "kit": null, "att_sites": [ "attB1", @@ -106041,7 +112355,10 @@ "plasmid_name": "PB-hEF1A-MG-U6-sgRNA", "sequence-type": "addgene-full", "addgene_id": "175505", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -106088,7 +112405,10 @@ "plasmid_name": "R703-M80-303: CMV51p> Halotag-Kras4bHVR", "sequence-type": "addgene-full", "addgene_id": "159683", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "att_sites": [ "attB1", @@ -106146,7 +112466,10 @@ "plasmid_name": "KY801: pMVP (L3-L2) P2A-eGFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121764", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -106184,7 +112507,10 @@ "plasmid_name": "pMXs-ms-Klf5", "sequence-type": "depositor-full", "addgene_id": "50787", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "att_sites": [ "attB1", @@ -106212,7 +112538,10 @@ "plasmid_name": "pDONR223_EGFR_p.T790M_p.L858R", "sequence-type": "addgene-full", "addgene_id": "82914", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82914.addgene-full.gb" }, @@ -106221,7 +112550,10 @@ "plasmid_name": "TFORF3493", "sequence-type": "addgene-full", "addgene_id": "144969", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144969.addgene-full.gb" }, @@ -106230,7 +112562,10 @@ "plasmid_name": "pCM5.58", "sequence-type": "depositor-full", "addgene_id": "19375", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -106261,7 +112596,10 @@ "plasmid_name": "pAFMW-Nbr[N1-383]", "sequence-type": "addgene-full", "addgene_id": "188586", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -106291,7 +112629,6 @@ "plasmid_name": "Hs.HRAS G12C", "sequence-type": "depositor-full", "addgene_id": "83182", - "references": [], "kit": null, "file": "data/addgene_plasmids/83182.depositor-full.gb" }, @@ -106300,7 +112637,10 @@ "plasmid_name": "pAAV_12xTEAD_luc2", "sequence-type": "addgene-full", "addgene_id": "173004", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -106347,7 +112687,10 @@ "plasmid_name": "pDONR223_WNK3_p.S617F", "sequence-type": "addgene-full", "addgene_id": "81709", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -106379,7 +112722,6 @@ "plasmid_name": "R777-E333 Hs.SPRY4", "sequence-type": "depositor-full", "addgene_id": "70618", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -106407,7 +112749,10 @@ "plasmid_name": "pCZGY2838", "sequence-type": "addgene-full", "addgene_id": "87759", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attB1", @@ -106448,7 +112793,10 @@ "plasmid_name": "pDONR223_REG3A_WT", "sequence-type": "addgene-full", "addgene_id": "81826", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -106480,7 +112828,10 @@ "plasmid_name": "pDONR223_GZMA_WT", "sequence-type": "addgene-full", "addgene_id": "81792", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -106492,7 +112843,10 @@ "plasmid_name": "pMOS011E: Entry vector for: superecliptic pHluorin (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163067", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -106527,7 +112881,10 @@ "plasmid_name": "pENTR-AtMIR390a-B/c", "sequence-type": "depositor-full", "addgene_id": "51778", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.113.234989", + "https://www.ncbi.nlm.nih.gov/pubmed/24647477" + ], "kit": null, "att_sites": [ "attL1", @@ -106563,7 +112920,10 @@ "plasmid_name": "pHAGE-BCL2-H20Q", "sequence-type": "addgene-full", "addgene_id": "116126", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -106613,7 +112973,10 @@ "plasmid_name": "pPN460", "sequence-type": "addgene-full", "addgene_id": "137878", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "file": "data/addgene_plasmids/137878.addgene-full.gb" }, @@ -106622,7 +112985,10 @@ "plasmid_name": "TFORF3170", "sequence-type": "addgene-full", "addgene_id": "144646", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -106682,7 +113048,10 @@ "plasmid_name": "actc1b-mKate2-Rab27b", "sequence-type": "addgene-full", "addgene_id": "109762", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -106724,7 +113093,10 @@ "plasmid_name": "pMuLE (R4-R3) PRB", "sequence-type": "addgene-full", "addgene_id": "206164", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "att_sites": [ "attR3", @@ -106755,7 +113127,10 @@ "plasmid_name": "dpYPQ230-D156R-CBE4", "sequence-type": "addgene-full", "addgene_id": "195369", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "att_sites": [ "attL1", @@ -106788,7 +113163,10 @@ "plasmid_name": "pCW-eGFP-SHLD1", "sequence-type": "addgene-full", "addgene_id": "114116", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "att_sites": [ "attB1", @@ -106846,7 +113224,10 @@ "plasmid_name": "pDONR223_GABRA6_p.G212R", "sequence-type": "addgene-full", "addgene_id": "81472", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -106878,7 +113259,10 @@ "plasmid_name": "pDONR221-SLC6A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161057", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -106909,7 +113293,10 @@ "plasmid_name": "pAG306GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14356", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -106965,7 +113352,10 @@ "plasmid_name": "TFORF2996", "sequence-type": "addgene-full", "addgene_id": "144472", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -107025,7 +113415,10 @@ "plasmid_name": "p3E-ATG18", "sequence-type": "addgene-full", "addgene_id": "109556", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -107056,7 +113449,10 @@ "plasmid_name": "BAF-WT-tet-puro", "sequence-type": "addgene-full", "addgene_id": "199648", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "att_sites": [ "attB1", @@ -107110,7 +113506,10 @@ "plasmid_name": "DDX27", "sequence-type": "addgene-full", "addgene_id": "155513", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -107153,7 +113552,10 @@ "plasmid_name": "Ad-FOXO1 1-360", "sequence-type": "addgene-full", "addgene_id": "131533", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "att_sites": [ "attB1", @@ -107190,7 +113592,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-let-7", "sequence-type": "depositor-full", "addgene_id": "46648", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -107240,7 +113645,10 @@ "plasmid_name": "pDONR221-SLC35F4_STOP", "sequence-type": "addgene-full", "addgene_id": "161263", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -107271,7 +113679,10 @@ "plasmid_name": "pDONR223_HAPLN1_p.K115N", "sequence-type": "addgene-full", "addgene_id": "81646", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -107303,7 +113714,6 @@ "plasmid_name": "p667-UBC-SRPK3-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189904", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -107368,7 +113778,10 @@ "plasmid_name": "pCLX-G4E1b-R1DESTR2-MIFE-PGK-mCherry", "sequence-type": "addgene-full", "addgene_id": "114322", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "att_sites": [ "attR1", @@ -107428,7 +113841,10 @@ "plasmid_name": "DYNLT3_pLX307", "sequence-type": "addgene-full", "addgene_id": "98329", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -107488,7 +113904,10 @@ "plasmid_name": "pEBTetBl-CLIP-POC5", "sequence-type": "addgene-full", "addgene_id": "136835", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -107533,7 +113952,9 @@ "plasmid_name": "pMpGWB128", "sequence-type": "depositor-full", "addgene_id": "68582", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -107581,7 +114002,6 @@ "plasmid_name": "pSCM167-Venus-VF-hSFRP1(aa181-314)", "sequence-type": "addgene-full", "addgene_id": "189550", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -107637,7 +114057,10 @@ "plasmid_name": "pDONR221-SLC25A35_STOP", "sequence-type": "addgene-full", "addgene_id": "161183", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -107668,7 +114091,10 @@ "plasmid_name": "TFORF3350", "sequence-type": "addgene-full", "addgene_id": "144826", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -107728,7 +114154,10 @@ "plasmid_name": "pHAGE-EGFR-V148M", "sequence-type": "addgene-full", "addgene_id": "116312", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -107782,7 +114211,10 @@ "plasmid_name": "pDONR221_SLC25A15", "sequence-type": "addgene-full", "addgene_id": "131967", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -107813,7 +114245,10 @@ "plasmid_name": "TFORF3316", "sequence-type": "addgene-full", "addgene_id": "144792", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -107873,7 +114308,10 @@ "plasmid_name": "pHAGE-FGFR3-V50I", "sequence-type": "addgene-full", "addgene_id": "116389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -107923,7 +114361,10 @@ "plasmid_name": "TFORF3233", "sequence-type": "addgene-full", "addgene_id": "144709", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -107983,7 +114424,10 @@ "plasmid_name": "pCMB-TGN41r", "sequence-type": "depositor-full", "addgene_id": "61177", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -108029,7 +114473,10 @@ "plasmid_name": "Munc18cwt-pDEST27", "sequence-type": "addgene-full", "addgene_id": "85626", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1600-0854.2006.00474.x", + "https://www.ncbi.nlm.nih.gov/pubmed/16899085" + ], "kit": null, "att_sites": [ "attB1", @@ -108077,7 +114524,10 @@ "plasmid_name": "pBabe_puro_DEST_Flag_PLD1", "sequence-type": "addgene-full", "addgene_id": "45268", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-12-0592", + "https://www.ncbi.nlm.nih.gov/pubmed/23764425" + ], "kit": null, "att_sites": [ "attB1", @@ -108110,7 +114560,10 @@ "plasmid_name": "pDONR223_DOK1_p.V393L", "sequence-type": "addgene-full", "addgene_id": "82774", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -108139,7 +114592,6 @@ "plasmid_name": "R777-E047 Hs.E2F2", "sequence-type": "depositor-full", "addgene_id": "70331", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -108167,7 +114619,9 @@ "plasmid_name": "pME-Luciferase-P2A-H2A-mCherry (JDW 926)", "sequence-type": "addgene-full", "addgene_id": "224488", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -108206,7 +114660,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP13", "sequence-type": "addgene-full", "addgene_id": "154411", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -108236,7 +114693,10 @@ "plasmid_name": "pFRT_TO_eGFP_TIAL1", "sequence-type": "addgene-full", "addgene_id": "106091", - 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"references": [], "kit": null, "att_sites": [ "attR1", @@ -108475,7 +114939,10 @@ "plasmid_name": "R620-M04-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(318-529)-3C-His8-SBP N501Y", "sequence-type": "addgene-full", "addgene_id": "170190", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -108531,7 +114998,10 @@ "plasmid_name": "pDONR223_RBM34_WT", "sequence-type": "addgene-full", "addgene_id": "82929", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -108560,7 +115030,10 @@ "plasmid_name": "IZ901: pMVP (L3-L2) OLLAS epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121759", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -108595,7 +115068,10 @@ "plasmid_name": "p221k-erTq2CFP", "sequence-type": "depositor-full", "addgene_id": "71264", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL1", @@ -108630,7 +115106,10 @@ "plasmid_name": "pHAGE-EGFR-H304Y", "sequence-type": "addgene-full", "addgene_id": "116260", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -108680,7 +115159,10 @@ "plasmid_name": "TFORF3478", "sequence-type": "addgene-full", "addgene_id": "144954", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -108740,7 +115222,10 @@ "plasmid_name": "pDONR223-ZNF69", "sequence-type": "addgene-full", "addgene_id": "88143", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -108769,7 +115254,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp4", "sequence-type": "depositor-full", "addgene_id": "168846", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -108798,7 +115286,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp4", "sequence-type": "addgene-full", "addgene_id": "168932", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -108827,7 +115318,10 @@ "plasmid_name": "pHAGE-BRAF-L597V", "sequence-type": "addgene-full", "addgene_id": "116180", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -108882,7 +115376,10 @@ "plasmid_name": "pLEX307-IBV-3CL", "sequence-type": "addgene-full", "addgene_id": "160288", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -108942,7 +115439,10 @@ "plasmid_name": "TFORF3024", "sequence-type": "addgene-full", "addgene_id": "144500", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -109002,7 +115502,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189876", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -109068,7 +115567,10 @@ "plasmid_name": "pDONR223_CTNNB1_WT", "sequence-type": "addgene-full", "addgene_id": "81734", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -109101,7 +115603,10 @@ "plasmid_name": "p{Mhc-F4-678-eGFP::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182185", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -109146,7 +115651,10 @@ "plasmid_name": "pDONR223_HERPUD2_WT", "sequence-type": "addgene-full", "addgene_id": "81880", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -109178,7 +115686,10 @@ "plasmid_name": "pDONR221-SLC35E4_STOP", "sequence-type": "addgene-full", "addgene_id": "161311", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -109210,7 +115721,10 @@ "plasmid_name": "pAAV2-SynTetOff-FLEX-[FGL-2A-palmRFP1]", "sequence-type": "addgene-full", "addgene_id": "190236", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "att_sites": [ "attB1", @@ -109259,7 +115773,10 @@ "plasmid_name": "pCZGY2840", "sequence-type": "addgene-full", "addgene_id": "87764", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attB1", @@ -109291,7 +115808,6 @@ "plasmid_name": "pLenti UBC LysoFlux (HaloTag7-mGFP-Galectin3)", "sequence-type": "addgene-full", "addgene_id": "215008", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -109357,7 +115873,10 @@ "plasmid_name": "pAAV-short Cre-on G/W", "sequence-type": "addgene-full", "addgene_id": "86949", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1918241117", + "https://www.ncbi.nlm.nih.gov/pubmed/32300008" + ], "kit": null, "att_sites": [ "attR1", @@ -109394,7 +115913,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP15_nostop", "sequence-type": "addgene-full", "addgene_id": "149317", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -109423,7 +115945,6 @@ "plasmid_name": "LP102: pMAGIC (R4-R3) NLS-Sp Cas9-NLS", "sequence-type": "addgene-full", "addgene_id": "132927", - "references": [], "kit": null, "att_sites": [ "attB4", @@ -109458,7 +115979,9 @@ "plasmid_name": "pAG415GPD-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166138", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attB1", @@ -109511,7 +116034,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-VRK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158196", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -109577,7 +116099,6 @@ "plasmid_name": "R777-E217 Hs.RALB", "sequence-type": "depositor-full", "addgene_id": "70501", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -109605,7 +116126,10 @@ "plasmid_name": "JAK2 (V617F)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64610", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attB1", @@ -109664,7 +116188,10 @@ "plasmid_name": "LC001: pMVP/PB/Hygro-DEST", "sequence-type": "addgene-full", "addgene_id": "121876", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -109707,7 +116234,10 @@ "plasmid_name": "pENTR4-HA-myc-nuc (w557-1)", "sequence-type": "depositor-full", "addgene_id": "20025", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -109735,7 +116265,10 @@ "plasmid_name": "pBVboostFGII WPRE 2A-CVB3", "sequence-type": "addgene-full", "addgene_id": "202076", - "references": [], + "references": [ + "https://doi.org/10.1128/spectrum.05352-22", + "https://www.ncbi.nlm.nih.gov/pubmed/37227147" + ], "kit": null, "att_sites": [ "attB1", @@ -109788,7 +116321,10 @@ "plasmid_name": "pWD509", "sequence-type": "depositor-full", "addgene_id": "73739", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.184275", + "https://www.ncbi.nlm.nih.gov/pubmed/26837755" + ], "kit": null, "att_sites": [ "attL1", @@ -109821,7 +116357,10 @@ "plasmid_name": "SIN-CMV-Cas9-V5-WPRE", "sequence-type": "addgene-full", "addgene_id": "87904", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "att_sites": [ "attB1", @@ -109874,7 +116413,10 @@ "plasmid_name": "pDONR223_GPR137B_p.S231F", "sequence-type": "addgene-full", "addgene_id": "82866", - 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"references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -110849,7 +117455,10 @@ "plasmid_name": "pDEST-hMeCP2-GFP-G273X", "sequence-type": "addgene-full", "addgene_id": "48080", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.038", + "https://www.ncbi.nlm.nih.gov/pubmed/23452848" + ], "kit": null, "att_sites": [ "attB1" @@ -110899,7 +117508,10 @@ "plasmid_name": "pLX304 YAP1", "sequence-type": "addgene-full", "addgene_id": "193689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -110958,7 +117570,6 @@ "plasmid_name": "R777-E199 Hs.PRKAG1", "sequence-type": "depositor-full", "addgene_id": "70483", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -110986,7 +117597,10 @@ "plasmid_name": "pGWB442", "sequence-type": "depositor-full", "addgene_id": "74828", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -111039,7 +117653,10 @@ "plasmid_name": "pAG305GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14330", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -111097,7 +117714,10 @@ "plasmid_name": "MSCV-CMV-DsRed-IRES-d4EGFP", "sequence-type": "addgene-full", "addgene_id": "41943", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1160489", + "https://www.ncbi.nlm.nih.gov/pubmed/18988847" + ], "kit": null, "file": "data/addgene_plasmids/41943.addgene-full.gb" }, @@ -111106,7 +117726,10 @@ "plasmid_name": "pDONR223-FGFR3", "sequence-type": "addgene-full", "addgene_id": "23933", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -111138,7 +117761,10 @@ "plasmid_name": "pHAGE-PIK3CA-G364R", "sequence-type": "addgene-full", "addgene_id": "116496", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -111192,7 +117818,6 @@ "plasmid_name": "pENTR-L1R5-floxHygpA", "sequence-type": "addgene-full", "addgene_id": "139559", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -111230,7 +117855,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-235", "sequence-type": "depositor-full", "addgene_id": "46660", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -111280,7 +117908,10 @@ "plasmid_name": "pDest-635", "sequence-type": "addgene-full", "addgene_id": "159582", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.107909", + "https://www.ncbi.nlm.nih.gov/pubmed/32697994" + ], "kit": null, "file": "data/addgene_plasmids/159582.addgene-full.gb" }, @@ -111289,7 +117920,10 @@ "plasmid_name": "pHAGE-POU4F2", "sequence-type": "addgene-full", "addgene_id": "116776", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -111340,7 +117974,10 @@ "plasmid_name": "pDONR223-ZNF680", "sequence-type": "addgene-full", "addgene_id": "88455", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -111369,7 +118006,9 @@ "plasmid_name": "pENTR4 genomic A. thaliana PLDGAMMA3", "sequence-type": "addgene-full", "addgene_id": "209188", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.09.25.558804" + ], "kit": null, "att_sites": [ "attL1", @@ -111393,7 +118032,10 @@ "plasmid_name": "pMDJ16 - pEXP[Peft-3 | mMaple3 (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159802", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -111430,7 +118072,6 @@ "plasmid_name": "pAG416GAL10-c-Src", "sequence-type": "addgene-full", "addgene_id": "203462", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -111479,7 +118120,6 @@ "plasmid_name": "R777-E073 Hs.EXOC4", "sequence-type": "depositor-full", "addgene_id": "70357", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -111508,7 +118148,10 @@ "plasmid_name": "pDONR1K18ms", "sequence-type": "depositor-full", "addgene_id": "72644", - "references": [], + "references": [ + "https://doi.org/10.1094/PHYTO-02-21-0057-R", + "https://www.ncbi.nlm.nih.gov/pubmed/34032522" + ], "kit": null, "att_sites": [ "attP1", @@ -111546,7 +118189,10 @@ "plasmid_name": "pGL2207", "sequence-type": "addgene-full", "addgene_id": "137048", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-9210-2_10", + "https://www.ncbi.nlm.nih.gov/pubmed/30980305" + ], "kit": null, "att_sites": [ "attL1", @@ -111579,7 +118225,10 @@ "plasmid_name": "pDONR223-CLK3", "sequence-type": "addgene-full", "addgene_id": "23753", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -111611,7 +118260,10 @@ "plasmid_name": "Tol2-LyzC-Rac-CA(guide resistant)-2a-mcherry-U6ac-Rac guides", "sequence-type": "addgene-full", "addgene_id": "168244", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "att_sites": [ "attB1", @@ -111655,7 +118307,6 @@ "plasmid_name": "CTNNB1 - W388S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216618", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -111685,7 +118336,10 @@ "plasmid_name": "pSGE_475_S2-1-GATA_dCP", "sequence-type": "depositor-full", "addgene_id": "71155", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -111718,7 +118372,10 @@ "plasmid_name": "pHAGE-PIK3CA-S629C", "sequence-type": "addgene-full", "addgene_id": "116542", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -111772,7 +118429,10 @@ "plasmid_name": "pGWB524", "sequence-type": "depositor-full", "addgene_id": "74866", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -111834,7 +118494,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0401-luc2", "sequence-type": "addgene-full", "addgene_id": "214628", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -111878,7 +118541,10 @@ "plasmid_name": "pLX302 LacZ-V5 puro", "sequence-type": "addgene-full", "addgene_id": "98579", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "att_sites": [ "attB1", @@ -111939,7 +118605,10 @@ "plasmid_name": "pENTR_L1-YFP-Turbo-L2", "sequence-type": "addgene-full", "addgene_id": "127350", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL1", @@ -111975,7 +118644,10 @@ "plasmid_name": "pDONR221-NIPAL1_STOP", "sequence-type": "addgene-full", "addgene_id": "161433", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -112006,7 +118678,10 @@ "plasmid_name": "pENTR223-BRRF1", "sequence-type": "addgene-full", "addgene_id": "195796", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -112035,7 +118710,10 @@ "plasmid_name": "C514-E13: attB5r-RU5u-His6-GST-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162955", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -112068,7 +118746,10 @@ "plasmid_name": "pENTR223-BFRF2", "sequence-type": "addgene-full", "addgene_id": "195822", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195822.addgene-full.gb" }, @@ -112077,7 +118758,10 @@ "plasmid_name": "pHAGE-PTH2-L22V", "sequence-type": "addgene-full", "addgene_id": "116639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -112127,7 +118811,6 @@ "plasmid_name": "R777-E346 Hs.TFDP2-nostop", "sequence-type": "depositor-full", "addgene_id": "70630", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -112155,7 +118838,10 @@ "plasmid_name": "pPIP1;4-NLS-3xmCitrine", "sequence-type": "addgene-full", "addgene_id": "192524", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.112676", + "https://www.ncbi.nlm.nih.gov/pubmed/37342910" + ], "kit": null, "att_sites": [ "attB1", @@ -112200,7 +118886,10 @@ "plasmid_name": "pAG304GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14183", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -112259,7 +118948,10 @@ "plasmid_name": "pLCS99", "sequence-type": "addgene-full", "addgene_id": "209327", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -112299,7 +118991,10 @@ "plasmid_name": "NCH2ec", "sequence-type": "addgene-full", "addgene_id": "131018", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "att_sites": [ "attL1", @@ -112334,7 +119029,10 @@ "plasmid_name": "pDONR221_SLC35B2", "sequence-type": "addgene-full", "addgene_id": "132251", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -112365,7 +119063,10 @@ "plasmid_name": "RWDD2B_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176956", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -112417,7 +119118,10 @@ "plasmid_name": "MAC_N_NFIB", "sequence-type": "addgene-full", "addgene_id": "167783", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -112462,7 +119166,10 @@ "plasmid_name": "pDONR223_GRB10_WT", "sequence-type": "addgene-full", "addgene_id": "82124", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -112491,7 +119198,10 @@ "plasmid_name": "pAd/CMV/V5-Clasp2\u03b1", "sequence-type": "addgene-full", "addgene_id": "89763", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.194662", + "https://www.ncbi.nlm.nih.gov/pubmed/28232523" + ], "kit": null, "att_sites": [ "attB1", @@ -112532,7 +119242,10 @@ "plasmid_name": "pLgw EcoDam-V5-SRF", "sequence-type": "addgene-full", "addgene_id": "98602", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attB1", @@ -112585,7 +119298,10 @@ "plasmid_name": "TERT", "sequence-type": "addgene-full", "addgene_id": "156078", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -112629,7 +119345,10 @@ "plasmid_name": "W118-1_Flag-hIRAK1", "sequence-type": "addgene-full", "addgene_id": "180405", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180405.addgene-full.gb" }, @@ -112638,7 +119357,10 @@ "plasmid_name": "pDONR221-SLC41A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161332", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -112669,7 +119391,10 @@ "plasmid_name": "pPB-cT3G-cERP2-MYC", "sequence-type": "addgene-full", "addgene_id": "192899", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -112716,7 +119441,10 @@ "plasmid_name": "pDONR221_SLC39A1", "sequence-type": "addgene-full", "addgene_id": "132058", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -112748,7 +119476,10 @@ "plasmid_name": "pDL111", "sequence-type": "addgene-full", "addgene_id": "175916", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -112772,7 +119503,10 @@ "plasmid_name": "pDESTmycPABPC4", "sequence-type": "depositor-full", "addgene_id": "19877", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -112820,7 +119554,10 @@ "plasmid_name": "MAC_N_AURKB", "sequence-type": "addgene-full", "addgene_id": "111682", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -112866,7 +119603,6 @@ "plasmid_name": "pENTR_Hu MAD2(WT)", "sequence-type": "addgene-full", "addgene_id": "136343", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -112897,7 +119633,10 @@ "plasmid_name": "pAB(EXPR-HDAC5-trun1)", "sequence-type": "addgene-full", "addgene_id": "114400", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "att_sites": [ "attB1", @@ -112948,7 +119687,10 @@ "plasmid_name": "pDONR223_HRAS_p.G12D", "sequence-type": "addgene-full", "addgene_id": "81284", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112980,7 +119722,6 @@ "plasmid_name": "pAG426GAL-SLEV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203510", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -113034,7 +119775,10 @@ "plasmid_name": "1b34", "sequence-type": "addgene-full", "addgene_id": "177692", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "att_sites": [ "attB1", @@ -113084,7 +119828,10 @@ "plasmid_name": "pHAGE-MAP2K4-G294E", "sequence-type": "addgene-full", "addgene_id": "116430", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -113135,7 +119882,10 @@ "plasmid_name": "pLEX307-mFzd5", "sequence-type": "addgene-full", "addgene_id": "102867", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "att_sites": [ "attB1", @@ -113192,7 +119942,6 @@ "plasmid_name": "R777-E283 Hs.ROCK1", "sequence-type": "depositor-full", "addgene_id": "70567", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -113220,7 +119969,9 @@ "plasmid_name": "p3E-FKBP-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82598", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -113254,7 +120005,10 @@ "plasmid_name": "pMx/ATP8B4(E170Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209255", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -113289,7 +120043,10 @@ "plasmid_name": "pTW325", "sequence-type": "addgene-full", "addgene_id": "115956", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "att_sites": [ "attP1", @@ -113326,7 +120083,6 @@ "plasmid_name": "pENTR-HLA-B15-His", "sequence-type": "addgene-full", "addgene_id": "104837", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -113358,7 +120114,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp7", "sequence-type": "depositor-full", "addgene_id": "168820", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -113387,7 +120146,10 @@ "plasmid_name": "pDEST-APIGH", "sequence-type": "addgene-full", "addgene_id": "112804", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2011.10.036", + "https://www.ncbi.nlm.nih.gov/pubmed/22243747" + ], "kit": null, "att_sites": [ "attR1", @@ -113410,7 +120172,10 @@ "plasmid_name": "HJP-178-IVS-Syn21-CreAB-NrdJ-1N-WPREw", "sequence-type": "addgene-full", "addgene_id": "162473", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "att_sites": [ "attR1", @@ -113446,7 +120211,10 @@ "plasmid_name": "pYPQ255", "sequence-type": "addgene-full", "addgene_id": "124310", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "att_sites": [ "attL1", @@ -113483,7 +120251,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-BRSK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135271", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -113549,7 +120316,10 @@ "plasmid_name": "pCK072 p5E 147bp exorh:EGFP", "sequence-type": "addgene-full", "addgene_id": "195950", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL4", @@ -113583,7 +120353,10 @@ "plasmid_name": "pDONR223_RHOA_p.T19N", "sequence-type": "addgene-full", "addgene_id": "82182", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -113613,7 +120386,6 @@ "plasmid_name": "pAG426-GAL-Prepro-3x-Adan", "sequence-type": "addgene-full", "addgene_id": "181733", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -113667,7 +120439,10 @@ "plasmid_name": "pGW-GFP-TurboID-GOI", "sequence-type": "addgene-full", "addgene_id": "209381", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "att_sites": [ "attR1", @@ -113719,7 +120494,10 @@ "plasmid_name": "pENTR223-CMV-Cre-U6-sgKdm6a#4-U6-sgRb1-U6-sgTrp53-U6-sgRbl2", "sequence-type": "addgene-full", "addgene_id": "209061", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-023-01210-z", + "https://www.ncbi.nlm.nih.gov/pubmed/37591951" + ], "kit": null, "att_sites": [ "attB3", @@ -113761,7 +120539,10 @@ "plasmid_name": "pDONR221_SLC39A13", "sequence-type": "addgene-full", "addgene_id": "132117", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -113792,7 +120573,10 @@ "plasmid_name": "pDONR223 LC3B2 G120A", "sequence-type": "addgene-full", "addgene_id": "123076", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -113822,7 +120606,10 @@ "plasmid_name": "pLX_TRC311 ETV4-L", "sequence-type": "depositor-full", "addgene_id": "74982", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/28178529" + ], "kit": null, "att_sites": [ "attB1", @@ -113880,7 +120667,6 @@ "plasmid_name": "R777-E245 Hs.RASGRP2", "sequence-type": "depositor-full", "addgene_id": "70529", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -113908,7 +120694,10 @@ "plasmid_name": "pTag4C_SP-HTR2A-V2R-NTEV-tcs-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "214615", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214615.addgene-full.gb" }, @@ -113917,7 +120706,10 @@ "plasmid_name": "pDONR223_CCND1_WT", "sequence-type": "addgene-full", "addgene_id": "82262", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -113947,7 +120739,10 @@ "plasmid_name": "pCMB-TMEr", "sequence-type": "depositor-full", "addgene_id": "61208", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -113992,7 +120787,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 CC3D", "sequence-type": "addgene-full", "addgene_id": "175776", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -114045,7 +120843,10 @@ "plasmid_name": "pDONR221-SLC25A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161181", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -114076,7 +120877,10 @@ "plasmid_name": "C515-E01: attB5r-stuffer-attB1r", "sequence-type": "addgene-full", "addgene_id": "162968", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -114105,7 +120909,10 @@ "plasmid_name": "pENTR mCherry L1-R5", "sequence-type": "depositor-full", "addgene_id": "43963", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "att_sites": [ "attL1", @@ -114139,7 +120946,10 @@ "plasmid_name": "pcDNA5FRT/TO-FAF1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113486", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -114183,7 +120993,10 @@ "plasmid_name": "GFP-BRD2", "sequence-type": "addgene-full", "addgene_id": "65376", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -114225,7 +121038,10 @@ "plasmid_name": "pENTR-L1-PGK-HygTK-L2", "sequence-type": "addgene-full", "addgene_id": "141006", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL1", @@ -114252,7 +121068,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-STK3", "sequence-type": "addgene-full", "addgene_id": "172990", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -114295,7 +121114,10 @@ "plasmid_name": "pHAGE-PIK3R1-R386*", "sequence-type": "addgene-full", "addgene_id": "116604", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -114346,7 +121168,10 @@ "plasmid_name": "pDONR223_GNA13_p.L374I", "sequence-type": "addgene-full", "addgene_id": "81350", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -114378,7 +121203,10 @@ "plasmid_name": "MAC_C_EPHB6", "sequence-type": "addgene-full", "addgene_id": "187763", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -114423,7 +121251,10 @@ "plasmid_name": "pDestTol2CG2-Neurog1-Magneto2.0-p2A-mCherry-pA", "sequence-type": "depositor-full", "addgene_id": "74302", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4265", + "https://www.ncbi.nlm.nih.gov/pubmed/26950006" + ], "kit": null, "att_sites": [ "attB1", @@ -114468,7 +121299,10 @@ "plasmid_name": "pLentiPGK Blast DEST ERKKTRmRuby2", "sequence-type": "addgene-full", "addgene_id": "90231", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "att_sites": [ "attB1", @@ -114527,7 +121361,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TESK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170614", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -114593,7 +121426,10 @@ "plasmid_name": "pENTR/pSM2(CMV) GFP (w513-1)", "sequence-type": "depositor-full", "addgene_id": "19170", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -114628,7 +121464,10 @@ "plasmid_name": "pDONR223_ZBTB24_WT", "sequence-type": "addgene-full", "addgene_id": "82887", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -114657,7 +121496,10 @@ "plasmid_name": "pDONR223_CCND1_p.E172K", "sequence-type": "addgene-full", "addgene_id": "82733", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -114689,7 +121531,6 @@ "plasmid_name": "R777-E103 Hs.ICMT", "sequence-type": "depositor-full", "addgene_id": "70387", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -114717,7 +121558,9 @@ "plasmid_name": "pDRFLIP39", "sequence-type": "depositor-full", "addgene_id": "65517", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -114769,7 +121612,10 @@ "plasmid_name": "pSLIK BirA* 3xFLAG-NUP37 zeo", "sequence-type": "addgene-full", "addgene_id": "192333", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -114835,7 +121681,10 @@ "plasmid_name": "pSGE_900_Nhe2_EcR-to-gl_RB", "sequence-type": "depositor-full", "addgene_id": "71185", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -114868,7 +121717,10 @@ "plasmid_name": "pLD-puro-Cc-CR-PARK7WT-VA", "sequence-type": "addgene-full", "addgene_id": "115187", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attB1", @@ -114930,7 +121782,6 @@ "plasmid_name": "pTRIPZ-NUDT18-C-FLAG-Puro", "sequence-type": "addgene-full", "addgene_id": "195181", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -114994,7 +121845,6 @@ "plasmid_name": "pINDUCER20-hMYOD1-3xHA (#730)", "sequence-type": "addgene-full", "addgene_id": "78328", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -115048,7 +121898,10 @@ "plasmid_name": "pFPL-Ch", "sequence-type": "addgene-full", "addgene_id": "61647", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-05-14-0144-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/25390188" + ], "kit": null, "att_sites": [ "attB1", @@ -115097,7 +121950,10 @@ "plasmid_name": "pDONR223_RASA1_p.E510K", "sequence-type": "addgene-full", "addgene_id": "81601", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -115129,7 +121985,10 @@ "plasmid_name": "pCSF107mT-GATEWAY-3'-Myc tag", "sequence-type": "addgene-full", "addgene_id": "67617", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2015.09.004", + "https://www.ncbi.nlm.nih.gov/pubmed/26391338" + ], "kit": null, "att_sites": [ "attR1", @@ -115176,7 +122035,10 @@ "plasmid_name": "pDONR221-SLC39A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161224", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -115208,7 +122070,10 @@ "plasmid_name": "pGAPi", "sequence-type": "addgene-full", "addgene_id": "127547", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.20.00865", + "https://www.ncbi.nlm.nih.gov/pubmed/32764132" + ], "kit": null, "att_sites": [ "attR1", @@ -115244,7 +122109,10 @@ "plasmid_name": "ph2b", "sequence-type": "depositor-full", "addgene_id": "32109", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1002161", + "https://www.ncbi.nlm.nih.gov/pubmed/21829355" + ], "kit": null, "att_sites": [ "attB1", @@ -115278,7 +122146,6 @@ "plasmid_name": "pT2-bactin:QF2,crybb:CFP", "sequence-type": "addgene-full", "addgene_id": "125697", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -115325,7 +122192,10 @@ "plasmid_name": "TFORF2959", "sequence-type": "addgene-full", "addgene_id": "144435", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -115385,7 +122255,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-C-mCherry", "sequence-type": "addgene-full", "addgene_id": "223952", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -115435,7 +122304,10 @@ "plasmid_name": "pDONR221_SLC12A3", "sequence-type": "addgene-full", "addgene_id": "131920", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -115466,7 +122338,6 @@ "plasmid_name": "pLenti6.3/NS3", "sequence-type": "addgene-full", "addgene_id": "120841", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -115525,7 +122396,10 @@ "plasmid_name": "TFORF3385", "sequence-type": "addgene-full", "addgene_id": "144861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -115586,7 +122460,10 @@ "plasmid_name": "PB-TAC-ERP2", "sequence-type": "addgene-full", "addgene_id": "80478", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "att_sites": [ "attR1", @@ -115647,7 +122524,10 @@ "plasmid_name": "pcDNA3_SP-DRD2-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194363", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -115704,7 +122584,10 @@ "plasmid_name": "pCFJ1002", "sequence-type": "depositor-full", "addgene_id": "44477", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attR3", @@ -115743,7 +122626,10 @@ "plasmid_name": "pEF.DEST51-mVenus", "sequence-type": "addgene-full", "addgene_id": "154899", - "references": [], + "references": [ + "https://doi.org/10.1038/s41388-020-01604-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33420373" + ], "kit": null, "att_sites": [ "attB1", @@ -115798,7 +122684,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep128", "sequence-type": "addgene-full", "addgene_id": "136872", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -115843,7 +122732,10 @@ "plasmid_name": "pHAGE-BRAF-G615R", "sequence-type": "addgene-full", "addgene_id": "116161", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -115898,7 +122790,6 @@ "plasmid_name": "pVP16-tev-PRT1", "sequence-type": "addgene-full", "addgene_id": "83405", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -115937,7 +122828,10 @@ "plasmid_name": "CPSF5", "sequence-type": "addgene-full", "addgene_id": "155480", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -115980,7 +122874,6 @@ "plasmid_name": "p667-UBC-PNCK-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189897", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -116045,7 +122938,10 @@ "plasmid_name": "pHAGE-RNF8-R42A", "sequence-type": "addgene-full", "addgene_id": "221702", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-023-01192-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37468549" + ], "kit": null, "att_sites": [ "attB1", @@ -116095,7 +122991,10 @@ "plasmid_name": "pEZYeGFP-SARS-CoV-2E", "sequence-type": "addgene-full", "addgene_id": "224580", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms241612793", + "https://www.ncbi.nlm.nih.gov/pubmed/37628973" + ], "kit": null, "att_sites": [ "attB1", @@ -116137,7 +123036,10 @@ "plasmid_name": "pENTR{FRT-RC}", "sequence-type": "addgene-full", "addgene_id": "182164", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -116169,7 +123071,10 @@ "plasmid_name": "pDONR223_GABRA6_WT", "sequence-type": "addgene-full", "addgene_id": "81861", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -116201,7 +123106,10 @@ "plasmid_name": "p7126 pHAGE-P-CMVt-N-HA-GAW-FTH1", "sequence-type": "addgene-full", "addgene_id": "100152", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -116253,7 +123161,6 @@ "plasmid_name": "R777-E169 Hs.PIK3CG", "sequence-type": "depositor-full", "addgene_id": "70453", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -116282,7 +123189,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF10wu_nostop", "sequence-type": "addgene-full", "addgene_id": "152986", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -116311,7 +123221,9 @@ "plasmid_name": "pRRLHygro-pEF1a-p53ashL344A-mKate2-splitmVenusC", "sequence-type": "depositor-full", "addgene_id": "69585", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "att_sites": [ "attB1", @@ -116372,7 +123284,10 @@ "plasmid_name": "pMuLE ENTR H1 L1-L4", "sequence-type": "depositor-full", "addgene_id": "62104", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -116405,7 +123320,10 @@ "plasmid_name": "pDONR223_IRF4_p.R96L", "sequence-type": "addgene-full", "addgene_id": "81435", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -116437,7 +123355,10 @@ "plasmid_name": "p3E-rab8a", "sequence-type": "addgene-full", "addgene_id": "109725", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -116468,7 +123389,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 NSP1_stop", "sequence-type": "addgene-full", "addgene_id": "168587", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -116497,7 +123421,10 @@ "plasmid_name": "TFORF3125", "sequence-type": "addgene-full", "addgene_id": "144601", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -116557,7 +123484,10 @@ "plasmid_name": "pENTRegfp3", "sequence-type": "depositor-full", "addgene_id": "22464", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attL1", @@ -116594,7 +123524,9 @@ "plasmid_name": "pAG426GAL-ccdB-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166142", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attR1", @@ -116652,7 +123584,10 @@ "plasmid_name": "Active Wnt8B-V5", "sequence-type": "depositor-full", "addgene_id": "43819", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -116700,7 +123635,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDKL3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158177", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -116766,7 +123700,10 @@ "plasmid_name": "pBi2FC-C-GRF4-P2A:mTagBFP2", "sequence-type": "addgene-full", "addgene_id": "216140", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attB1", @@ -116813,7 +123750,10 @@ "plasmid_name": "pMSCVneo-DEST", "sequence-type": "addgene-full", "addgene_id": "119746", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.3451", + "https://www.ncbi.nlm.nih.gov/pubmed/26595769" + ], "kit": null, "att_sites": [ "attR1", @@ -116860,7 +123800,10 @@ "plasmid_name": "pDONR223_AKR1B1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82953", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -116889,7 +123832,10 @@ "plasmid_name": "p5E-4xnrUAS (L4-R1)", "sequence-type": "depositor-full", "addgene_id": "61372", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2011.01.002", + "https://www.ncbi.nlm.nih.gov/pubmed/21223961" + ], "kit": null, "att_sites": [ "attL4", @@ -116920,7 +123866,10 @@ "plasmid_name": "KW701: pMVP (L5-L4) AID", "sequence-type": "addgene-full", "addgene_id": "121723", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -116953,7 +123902,10 @@ "plasmid_name": "pDONR223_NKX2-5", "sequence-type": "addgene-full", "addgene_id": "221479", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attL1", @@ -116982,7 +123934,10 @@ "plasmid_name": "pMMK ENTR 1 CMV mAG beta-catenin", "sequence-type": "addgene-full", "addgene_id": "206258", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL1", @@ -117013,7 +123968,6 @@ "plasmid_name": "Hs.KRAS4b Q61L", "sequence-type": "depositor-full", "addgene_id": "83134", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -117042,7 +123996,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp2", "sequence-type": "addgene-full", "addgene_id": "168948", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -117071,7 +124028,10 @@ "plasmid_name": "pLenti-EF1a-Ngn3ER-PuroR-mCherry", "sequence-type": "addgene-full", "addgene_id": "197385", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-023-01130-y", + "https://www.ncbi.nlm.nih.gov/pubmed/37106062" + ], "kit": null, "att_sites": [ "attB1", @@ -117122,7 +124082,10 @@ "plasmid_name": "pENTR-JNKKTRClover", "sequence-type": "depositor-full", "addgene_id": "59139", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attL1", @@ -117148,7 +124111,10 @@ "plasmid_name": "pDONR223_RB1_p.I782M", "sequence-type": "addgene-full", "addgene_id": "81547", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -117180,7 +124146,10 @@ "plasmid_name": "pDONR221-SLC26A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161162", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -117211,7 +124180,10 @@ "plasmid_name": "TFORF3297", "sequence-type": "addgene-full", "addgene_id": "144773", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -117271,7 +124243,10 @@ "plasmid_name": "pENTR-ZmIAA2", "sequence-type": "addgene-full", "addgene_id": "188428", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -117302,7 +124277,10 @@ "plasmid_name": "actc1b-mKate2-rab8a", "sequence-type": "addgene-full", "addgene_id": "109657", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -117344,7 +124322,10 @@ "plasmid_name": "pDONR221_SLC1A6", "sequence-type": "addgene-full", "addgene_id": "131986", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -117375,7 +124356,10 @@ "plasmid_name": "pDONR221-LETM2_STOP", "sequence-type": "depositor-full", "addgene_id": "161436", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -117406,7 +124390,10 @@ "plasmid_name": "TFORF3017", "sequence-type": "addgene-full", "addgene_id": "144493", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -117466,7 +124453,10 @@ "plasmid_name": "pDONR221-SLC27A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161282", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -117497,7 +124487,10 @@ "plasmid_name": "5'-3xFLAG Kansl3-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212052", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -117538,7 +124531,10 @@ "plasmid_name": "pDONR221-kcnj4", "sequence-type": "addgene-full", "addgene_id": "173131", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -117569,7 +124565,10 @@ "plasmid_name": "pBS L30 Flag-Apex-Rab7A", "sequence-type": "addgene-full", "addgene_id": "135652", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.aba7803", + "https://www.ncbi.nlm.nih.gov/pubmed/33523982" + ], "kit": null, "att_sites": [ "attB1", @@ -117614,7 +124613,10 @@ "plasmid_name": "pDONR221-SLC25A38_STOP", "sequence-type": "addgene-full", "addgene_id": "161219", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -117645,7 +124647,10 @@ "plasmid_name": "TFORF2932", "sequence-type": "addgene-full", "addgene_id": "144408", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -117705,7 +124710,10 @@ "plasmid_name": "pLenti_EF1a_Flag_TP53_R248W", "sequence-type": "addgene-full", "addgene_id": "183114", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "att_sites": [ "attB1", @@ -117764,7 +124772,10 @@ "plasmid_name": "MAC_N_COMMD3", "sequence-type": "addgene-full", "addgene_id": "209676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -117809,7 +124820,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-Swa1::RfA", "sequence-type": "addgene-full", "addgene_id": "186396", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -117846,7 +124860,10 @@ "plasmid_name": "pSLIK-IDH2-R172K-FLAG", "sequence-type": "addgene-full", "addgene_id": "66807", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + ], "kit": null, "att_sites": [ "attB1", @@ -117913,7 +124930,10 @@ "plasmid_name": "pGL3-Gateway-DSCP", "sequence-type": "depositor-full", "addgene_id": "71506", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1232542", + "https://www.ncbi.nlm.nih.gov/pubmed/23328393" + ], "kit": null, "att_sites": [ "attR1", @@ -117951,7 +124971,10 @@ "plasmid_name": "pHAGE-ESR1-E380Q", "sequence-type": "addgene-full", "addgene_id": "116368", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -118003,7 +125026,10 @@ "plasmid_name": "pDONR223_ZBTB24_p.Q669R", "sequence-type": "addgene-full", "addgene_id": "82795", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82795.addgene-full.gb" }, @@ -118012,7 +125038,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.S45F", "sequence-type": "addgene-full", "addgene_id": "82821", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -118042,7 +125071,10 @@ "plasmid_name": "pENTR D-TOPO-C3_26", "sequence-type": "depositor-full", "addgene_id": "60269", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -118073,7 +125105,9 @@ "plasmid_name": "pPB-cT3G-cERP2-PAX6a", "sequence-type": "addgene-full", "addgene_id": "222576", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -118119,7 +125153,6 @@ "plasmid_name": "pEF 1-2x35S-4", "sequence-type": "depositor-full", "addgene_id": "20093", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -118152,7 +125185,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.A79V", "sequence-type": "addgene-full", "addgene_id": "81408", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -118184,7 +125220,9 @@ "plasmid_name": "pMpGWB335", "sequence-type": "depositor-full", "addgene_id": "68663", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -118231,7 +125269,10 @@ "plasmid_name": "LA601: pMVP (L3-L2) P2A-Puro + WPRE", "sequence-type": "addgene-full", "addgene_id": "121785", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -118267,7 +125308,10 @@ "plasmid_name": "KQ403: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS-LSD1", "sequence-type": "addgene-full", "addgene_id": "121831", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -118302,7 +125346,10 @@ "plasmid_name": "pAG426GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14204", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -118364,7 +125411,10 @@ "plasmid_name": "pLenti6.3/TO/V5-DEST-IGFBP2-Clover", "sequence-type": "addgene-full", "addgene_id": "191008", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg1840", + "https://www.ncbi.nlm.nih.gov/pubmed/37436978" + ], "kit": null, "att_sites": [ "attB1", @@ -118426,7 +125476,10 @@ "plasmid_name": "p3E-rab5b", "sequence-type": "addgene-full", "addgene_id": "109718", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -118457,7 +125510,10 @@ "plasmid_name": "pEX-SP-CFP-STIM1(23-685)", "sequence-type": "depositor-full", "addgene_id": "18858", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2005.05.055", + "https://www.ncbi.nlm.nih.gov/pubmed/16005298" + ], "kit": null, "att_sites": [ "attB1", @@ -118500,7 +125556,10 @@ "plasmid_name": "pHAGE-DDX3X-S412F", "sequence-type": "addgene-full", "addgene_id": "116227", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -118555,7 +125614,10 @@ "plasmid_name": "pLVX-UBE3B-HA-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107346", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "att_sites": [ "attB1", @@ -118605,7 +125667,10 @@ "plasmid_name": "TFORF3437", "sequence-type": "addgene-full", "addgene_id": "144913", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -118665,7 +125730,9 @@ "plasmid_name": "p3E-P2A-GFP no-pA", "sequence-type": "depositor-full", "addgene_id": "80826", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -118703,7 +125770,6 @@ "plasmid_name": "p41Neo 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58545", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -118760,7 +125826,10 @@ "plasmid_name": "pDONR221-SLC43A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161356", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -118791,7 +125860,9 @@ "plasmid_name": "p3E-EF1a-pA (JDW 1222)", "sequence-type": "addgene-full", "addgene_id": "224526", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -118823,7 +125894,10 @@ "plasmid_name": "pMMDS 2 colors", "sequence-type": "addgene-full", "addgene_id": "206265", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attB1", @@ -118862,7 +125936,10 @@ "plasmid_name": "pEF5B-FRT-AP-Smo-YFP-DEST", "sequence-type": "depositor-full", "addgene_id": "49099", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.00654", + "https://www.ncbi.nlm.nih.gov/pubmed/23930224" + ], "kit": null, "file": "data/addgene_plasmids/49099.depositor-full.gb" }, @@ -118871,7 +125948,10 @@ "plasmid_name": "pDONR223_KIR3DL2_WT", "sequence-type": "addgene-full", "addgene_id": "81773", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -118903,7 +125983,10 @@ "plasmid_name": "TFORF3071", "sequence-type": "addgene-full", "addgene_id": "144547", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -118963,7 +126046,9 @@ "plasmid_name": "pDONR221-RPS10", "sequence-type": "addgene-full", "addgene_id": "166204", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -118994,7 +126079,10 @@ "plasmid_name": "pLV-mCherry-FKBP-TIAM1(DHPH)", "sequence-type": "addgene-full", "addgene_id": "176138", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.84364", + "https://www.ncbi.nlm.nih.gov/pubmed/37449837" + ], "kit": null, "file": "data/addgene_plasmids/176138.addgene-full.gb" }, @@ -119003,7 +126091,6 @@ "plasmid_name": "R777-E117 Hs.KSR1", "sequence-type": "depositor-full", "addgene_id": "70401", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -119031,7 +126118,10 @@ "plasmid_name": "pMuLE ENTR CMV iRFP L1-R5", "sequence-type": "depositor-full", "addgene_id": "62156", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -119064,7 +126154,10 @@ "plasmid_name": "TFORF3461", "sequence-type": "addgene-full", "addgene_id": "144937", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -119124,7 +126217,10 @@ "plasmid_name": "362 pCS Cherry DEST", "sequence-type": "depositor-full", "addgene_id": "13075", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -119173,7 +126269,10 @@ "plasmid_name": "pHAGE-BRAF-V600_K601delinsE", "sequence-type": "addgene-full", "addgene_id": "116203", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -119228,7 +126327,10 @@ "plasmid_name": "pDONR221_SLC16A9", "sequence-type": "addgene-full", "addgene_id": "131876", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -119259,7 +126361,10 @@ "plasmid_name": "TFORF3207", "sequence-type": "addgene-full", "addgene_id": "144683", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -119319,7 +126424,10 @@ "plasmid_name": "TFORF3087", "sequence-type": "addgene-full", "addgene_id": "144563", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -119379,7 +126487,10 @@ "plasmid_name": "ALDH18A1", "sequence-type": "addgene-full", "addgene_id": "155402", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -119422,7 +126533,10 @@ "plasmid_name": "pDEST17-UbE2H", "sequence-type": "addgene-full", "addgene_id": "15752", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "att_sites": [ "attB1", @@ -119454,7 +126568,10 @@ "plasmid_name": "pEntry_HCoV-OC43-Spike", "sequence-type": "addgene-full", "addgene_id": "168951", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -119483,7 +126600,9 @@ "plasmid_name": "pDONR221-VPS35", "sequence-type": "addgene-full", "addgene_id": "166220", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -119514,7 +126633,9 @@ "plasmid_name": "pME-mScarlet3-Giantin (JDW 1356)", "sequence-type": "addgene-full", "addgene_id": "224502", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -119549,7 +126670,10 @@ "plasmid_name": "pDONR221-SLC5A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161372", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -119580,7 +126704,10 @@ "plasmid_name": "pJG80", "sequence-type": "depositor-full", "addgene_id": "89282", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.13446", + "https://www.ncbi.nlm.nih.gov/pubmed/27943461" + ], "kit": null, "att_sites": [ "attL1", @@ -119614,7 +126741,10 @@ "plasmid_name": "pDONR223_HAPLN1_WT", "sequence-type": "addgene-full", "addgene_id": "81757", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -119646,7 +126776,10 @@ "plasmid_name": "pDONR221-SLC34A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161254", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161254.depositor-full.gb" }, @@ -119655,7 +126788,10 @@ "plasmid_name": "pDONR223_FAM200A_WT", "sequence-type": "addgene-full", "addgene_id": "81878", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -119687,7 +126823,10 @@ "plasmid_name": "A1-LCD-30G+30S+7F-7Y", "sequence-type": "addgene-full", "addgene_id": "178686", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -119722,7 +126861,6 @@ "plasmid_name": "Hs.KRAS4a", "sequence-type": "depositor-full", "addgene_id": "83166", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -119747,7 +126885,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SAP30", "sequence-type": "addgene-full", "addgene_id": "222552", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -119793,7 +126933,10 @@ "plasmid_name": "DCP2", "sequence-type": "addgene-full", "addgene_id": "155499", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -119836,7 +126979,10 @@ "plasmid_name": "pHAGE-BRAF-L597R", "sequence-type": "addgene-full", "addgene_id": "116178", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -119891,7 +127037,10 @@ "plasmid_name": "pHAGE-EGFR-R776G", "sequence-type": "addgene-full", "addgene_id": "116298", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -119945,7 +127094,10 @@ "plasmid_name": "pDEST-hisMBP-AsCpf1-EC", "sequence-type": "addgene-full", "addgene_id": "79007", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt.3596", + "https://www.ncbi.nlm.nih.gov/pubmed/27272385" + ], "kit": null, "att_sites": [ "attB1", @@ -119992,7 +127144,10 @@ "plasmid_name": "pBullet-tgn-c", "sequence-type": "depositor-full", "addgene_id": "53072", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -120029,7 +127184,10 @@ "plasmid_name": "pYPQ230-RRV", "sequence-type": "addgene-full", "addgene_id": "188543", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02929-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37122009" + ], "kit": null, "att_sites": [ "attL1", @@ -120061,7 +127219,10 @@ "plasmid_name": "pCM5.43", "sequence-type": "depositor-full", "addgene_id": "19391", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -120092,7 +127253,10 @@ "plasmid_name": "TFORF3142", "sequence-type": "addgene-full", "addgene_id": "144618", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -120151,7 +127315,10 @@ "plasmid_name": "pEntry_HCoV-OC43-Membrane", "sequence-type": "depositor-full", "addgene_id": "168946", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -120180,7 +127347,10 @@ "plasmid_name": "pNSA-FLUC", "sequence-type": "addgene-full", "addgene_id": "98143", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.14314", + "https://www.ncbi.nlm.nih.gov/pubmed/30883973" + ], "kit": null, "att_sites": [ "attR1", @@ -120226,7 +127396,10 @@ "plasmid_name": "JI601: pMAGIC (L1-R5) hU6::SaCas9 gRNA scaffold; RIP", "sequence-type": "addgene-full", "addgene_id": "121815", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -120260,7 +127433,10 @@ "plasmid_name": "actc1b-mKate2-EEA1", "sequence-type": "addgene-full", "addgene_id": "109508", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109508.addgene-full.gb" }, @@ -120269,7 +127445,10 @@ "plasmid_name": "W118-1_eGFP", "sequence-type": "addgene-full", "addgene_id": "180379", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "att_sites": [ "attB1", @@ -120335,7 +127514,10 @@ "plasmid_name": "TGFB1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98377", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98377.addgene-full.gb" }, @@ -120344,7 +127526,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM R394E", "sequence-type": "addgene-full", "addgene_id": "169987", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attB1", @@ -120396,7 +127581,10 @@ "plasmid_name": "pDONR223_IDH2_p.R172M", "sequence-type": "addgene-full", "addgene_id": "81618", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -120428,7 +127616,10 @@ "plasmid_name": "pDONR223_TPK1_p.T213S", "sequence-type": "addgene-full", "addgene_id": "82805", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -120457,7 +127648,9 @@ "plasmid_name": "pLV-EgI-HygroR", "sequence-type": "addgene-full", "addgene_id": "207177", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "att_sites": [ "attR1", @@ -120512,7 +127705,10 @@ "plasmid_name": "TFORF3402", "sequence-type": "addgene-full", "addgene_id": "144878", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -120572,7 +127768,10 @@ "plasmid_name": "pCMU-ACTLr", "sequence-type": "depositor-full", "addgene_id": "61193", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -120618,7 +127817,6 @@ "plasmid_name": "pENTRY4_ ERF922", "sequence-type": "addgene-full", "addgene_id": "126893", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -120653,7 +127851,10 @@ "plasmid_name": "pDONR221_SLC16A11", "sequence-type": "addgene-full", "addgene_id": "131939", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -120685,7 +127886,10 @@ "plasmid_name": "R619-M89-303: CMV51p> HCoV-HKU1 S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166014", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -120741,7 +127945,10 @@ "plasmid_name": "p3E-rab1aa", "sequence-type": "addgene-full", "addgene_id": "109673", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -120772,7 +127979,10 @@ "plasmid_name": "TFORF3281", "sequence-type": "addgene-full", "addgene_id": "144757", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -120832,7 +128042,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_UBM-mut", "sequence-type": "addgene-full", "addgene_id": "187150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -120877,7 +128090,10 @@ "plasmid_name": "pDONR223_GALNTL5_p.D221E", "sequence-type": "addgene-full", "addgene_id": "81563", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -120909,7 +128125,9 @@ "plasmid_name": "pMpGWB112", "sequence-type": "depositor-full", "addgene_id": "68566", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -120955,7 +128173,10 @@ "plasmid_name": "pDONR223_H2AFX_WT", "sequence-type": "addgene-full", "addgene_id": "81937", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -120987,7 +128208,10 @@ "plasmid_name": "5'-3xFLAG Tcf12-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212076", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -121027,7 +128251,10 @@ "plasmid_name": "pLIX403_UBAP2L_mCherry", "sequence-type": "addgene-full", "addgene_id": "105286", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.12.032", + "https://www.ncbi.nlm.nih.gov/pubmed/29373831" + ], "kit": null, "att_sites": [ "attB1", @@ -121086,7 +128313,10 @@ "plasmid_name": "pDONR223_PTEN_p.G127V", "sequence-type": "addgene-full", "addgene_id": "81683", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -121118,7 +128348,10 @@ "plasmid_name": "actc1b-mKate2-rab10", "sequence-type": "addgene-full", "addgene_id": "109593", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -121160,7 +128393,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp2", "sequence-type": "depositor-full", "addgene_id": "168908", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -121189,7 +128425,10 @@ "plasmid_name": "pDONR223_MVP_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82977", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -121218,7 +128457,9 @@ "plasmid_name": "pMpGWB303", "sequence-type": "depositor-full", "addgene_id": "68631", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -121264,7 +128505,10 @@ "plasmid_name": "mKate2-P2A-APEX2-2xML1N(7Q)", "sequence-type": "depositor-full", "addgene_id": "67666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -121309,7 +128553,10 @@ "plasmid_name": "KU701: pMVP (L5-L4) eGFP", "sequence-type": "addgene-full", "addgene_id": "121707", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -121345,7 +128592,10 @@ "plasmid_name": "pAG304GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14256", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -121401,7 +128651,9 @@ "plasmid_name": "pDONR221 msNLRP3(\u0394PYD, I125M-END)", "sequence-type": "addgene-full", "addgene_id": "218641", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218641.addgene-full.gb" }, @@ -121410,7 +128662,10 @@ "plasmid_name": "pMS050", "sequence-type": "addgene-full", "addgene_id": "91826", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "att_sites": [ "attL1", @@ -121441,7 +128696,10 @@ "plasmid_name": "pcDNA5FRT/TO-Strep/HA-UBE2QL1", "sequence-type": "addgene-full", "addgene_id": "124665", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "att_sites": [ "attB1", @@ -121485,7 +128743,10 @@ "plasmid_name": "pYPQ281 (MbCas12a)", "sequence-type": "addgene-full", "addgene_id": "138113", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -121517,7 +128778,10 @@ "plasmid_name": "pDONR221-kcnk13a", "sequence-type": "addgene-full", "addgene_id": "208996", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -121548,7 +128812,10 @@ "plasmid_name": "pCLX-M38s/TOP-dGFP", "sequence-type": "addgene-full", "addgene_id": "114295", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.01.061", + "https://www.ncbi.nlm.nih.gov/pubmed/25732825" + ], "kit": null, "att_sites": [ "attB1", @@ -121600,7 +128867,10 @@ "plasmid_name": "pDONR223_RGR_WT", "sequence-type": "addgene-full", "addgene_id": "81845", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -121632,7 +128902,10 @@ "plasmid_name": "pENTR4 no ccDB (686-1)", "sequence-type": "addgene-full", "addgene_id": "17424", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -121656,7 +128929,10 @@ "plasmid_name": "pHAGE-BRAF-G258V", "sequence-type": "addgene-full", "addgene_id": "116145", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -121711,7 +128987,10 @@ "plasmid_name": "TFORF3149", "sequence-type": "addgene-full", "addgene_id": "144625", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -121771,7 +129050,10 @@ "plasmid_name": "p3E-rab39ba", "sequence-type": "addgene-full", "addgene_id": "109701", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -121802,7 +129084,10 @@ "plasmid_name": "pME phluorin2-gpi", "sequence-type": "depositor-full", "addgene_id": "73793", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.016576", + "https://www.ncbi.nlm.nih.gov/pubmed/24973752" + ], "kit": null, "att_sites": [ "attL1", @@ -121836,7 +129121,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-3", "sequence-type": "depositor-full", "addgene_id": "46706", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -121886,7 +129174,9 @@ "plasmid_name": "pDONR221-DDX5(IDR)", "sequence-type": "addgene-full", "addgene_id": "166166", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -121917,7 +129207,10 @@ "plasmid_name": "pCXLE-hGLIS1", "sequence-type": "depositor-full", "addgene_id": "37625", - "references": [], + "references": [ + "https://doi.org/10.1002/stem.1293", + "https://www.ncbi.nlm.nih.gov/pubmed/23193063" + ], "kit": null, "att_sites": [ "attB1", @@ -121959,7 +129252,10 @@ "plasmid_name": "KN701: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS", "sequence-type": "addgene-full", "addgene_id": "121828", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -121994,7 +129290,10 @@ "plasmid_name": "pDONR221-CLN3_STOP", "sequence-type": "addgene-full", "addgene_id": "161034", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -122025,7 +129324,10 @@ "plasmid_name": "pEGFP\u2010RNASEH2C", "sequence-type": "addgene-full", "addgene_id": "108698", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkq980", + "https://www.ncbi.nlm.nih.gov/pubmed/21245041" + ], "kit": null, "att_sites": [ "attB1", @@ -122067,7 +129369,10 @@ "plasmid_name": "pDONR223_FAM196A_p.R399Q", "sequence-type": "addgene-full", "addgene_id": "81411", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -122099,7 +129404,6 @@ "plasmid_name": "p5E-2.3k-fabp2", "sequence-type": "addgene-full", "addgene_id": "84927", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -122134,7 +129438,10 @@ "plasmid_name": "pEPYCeGM0009", "sequence-type": "addgene-full", "addgene_id": "196143", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attL1", @@ -122158,7 +129465,10 @@ "plasmid_name": "dg265_pENTR_CoChRCel", "sequence-type": "depositor-full", "addgene_id": "66103", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.177956", + "https://www.ncbi.nlm.nih.gov/pubmed/26022242" + ], "kit": null, "att_sites": [ "attL1", @@ -122192,7 +129502,6 @@ "plasmid_name": "35S:YFPc-RabG3b-CA", "sequence-type": "addgene-full", "addgene_id": "102372", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -122227,7 +129536,10 @@ "plasmid_name": "TFORF2935", "sequence-type": "addgene-full", "addgene_id": "144411", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -122287,7 +129599,10 @@ "plasmid_name": "actc1b-mKate2-ARF1", "sequence-type": "addgene-full", "addgene_id": "109535", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -122329,7 +129644,10 @@ "plasmid_name": "pDONR223_HIST1H3B_p.L101W", "sequence-type": "addgene-full", "addgene_id": "81625", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -122361,7 +129679,10 @@ "plasmid_name": "pRosa26-EF1a-hCas9IRESneo", "sequence-type": "addgene-full", "addgene_id": "67987", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2016.09.079", + "https://www.ncbi.nlm.nih.gov/pubmed/27760321" + ], "kit": null, "att_sites": [ "attB1", @@ -122418,7 +129739,10 @@ "plasmid_name": "pDONR221-SLC22A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161200", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -122449,7 +129773,10 @@ "plasmid_name": "pAG415GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14218", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -122510,7 +129837,10 @@ "plasmid_name": "pDONR221-kcnj2b", "sequence-type": "addgene-full", "addgene_id": "173128", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -122541,7 +129871,10 @@ "plasmid_name": "pDONR223_BRAF_p.G469S", "sequence-type": "addgene-full", "addgene_id": "82838", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -122571,7 +129904,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Centrin3", "sequence-type": "addgene-full", "addgene_id": "136856", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -122614,7 +129950,10 @@ "plasmid_name": "pT3-EF1aH Yap S127A", "sequence-type": "addgene-full", "addgene_id": "86497", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2013.02.009", + "https://www.ncbi.nlm.nih.gov/pubmed/23419361" + ], "kit": null, "att_sites": [ "attB1", @@ -122656,7 +129995,10 @@ "plasmid_name": "pDONR221_FLVCR2", "sequence-type": "addgene-full", "addgene_id": "131904", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -122687,7 +130029,10 @@ "plasmid_name": "TFORF3369", "sequence-type": "addgene-full", "addgene_id": "144845", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -122747,7 +130092,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-Erbb2 NLS", "sequence-type": "addgene-full", "addgene_id": "192317", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -122783,7 +130131,10 @@ "plasmid_name": "pENTR-ZmIAA8", "sequence-type": "addgene-full", "addgene_id": "188431", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -122814,7 +130165,10 @@ "plasmid_name": "pYPQ239-RVR", "sequence-type": "addgene-full", "addgene_id": "108863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "file": "data/addgene_plasmids/108863.addgene-full.gb" }, @@ -122823,7 +130177,10 @@ "plasmid_name": "pLX303-ZIM3-KRAB-dCas9", "sequence-type": "addgene-full", "addgene_id": "154472", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-020-0966-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33020655" + ], "kit": null, "att_sites": [ "attB1", @@ -122886,7 +130243,10 @@ "plasmid_name": "Fragment 1 Null", "sequence-type": "addgene-full", "addgene_id": "198729", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-022-01585-8", + "https://www.ncbi.nlm.nih.gov/pubmed/36593415" + ], "kit": null, "att_sites": [ "attL1", @@ -122911,7 +130271,6 @@ "plasmid_name": "HA-hDAGLb-V5", "sequence-type": "addgene-full", "addgene_id": "87675", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -122961,7 +130320,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP16", "sequence-type": "addgene-full", "addgene_id": "158367", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -123006,7 +130368,10 @@ "plasmid_name": "pcDNA pDEST40 Cas9 GW STOP", "sequence-type": "addgene-full", "addgene_id": "183196", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "att_sites": [ "attR1", @@ -123065,7 +130430,6 @@ "plasmid_name": "p42Hyg 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58559", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -123121,7 +130485,10 @@ "plasmid_name": "pGWB452", "sequence-type": "depositor-full", "addgene_id": "74834", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -123172,7 +130539,10 @@ "plasmid_name": "MSCV-N JCV-cy ER", "sequence-type": "addgene-full", "addgene_id": "37866", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "att_sites": [ "attB1", @@ -123217,7 +130587,10 @@ "plasmid_name": "pHAGE-PTEN-D331Tfs*13", "sequence-type": "addgene-full", "addgene_id": "116620", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -123271,7 +130644,10 @@ "plasmid_name": "pENTR2-L3-SfoI-mCherry-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141022", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL3", @@ -123313,7 +130689,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKVC", "sequence-type": "addgene-full", "addgene_id": "145339", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -123356,7 +130735,10 @@ "plasmid_name": "pEnt L1L3 EF1a-tTA-2", "sequence-type": "depositor-full", "addgene_id": "26803", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "att_sites": [ "attL1", @@ -123389,7 +130771,10 @@ "plasmid_name": "2xmyc-JIP4", "sequence-type": "addgene-full", "addgene_id": "164633", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "att_sites": [ "attB1", @@ -123431,7 +130816,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-GABARAPL2Y49A/L50A", "sequence-type": "addgene-full", "addgene_id": "175752", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -123482,7 +130870,10 @@ "plasmid_name": "pEntry Tshld-GFP", "sequence-type": "depositor-full", "addgene_id": "53211", - "references": [], + "references": [ + "https://doi.org/10.1002/cbic.201400006", + "https://www.ncbi.nlm.nih.gov/pubmed/24615791" + ], "kit": null, "att_sites": [ "attL1", @@ -123514,7 +130905,6 @@ "plasmid_name": "R777-E021 Hs.CCND3", "sequence-type": "depositor-full", "addgene_id": "70305", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -123542,7 +130932,10 @@ "plasmid_name": "MAC_N_KLF5", "sequence-type": "addgene-full", "addgene_id": "187747", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -123587,7 +130980,10 @@ "plasmid_name": "pDONR223_DNASE2_p.Y182H", "sequence-type": "addgene-full", "addgene_id": "81374", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -123619,7 +131015,10 @@ "plasmid_name": "pCFJ2214 - Intron GG1 - 900 bp", "sequence-type": "addgene-full", "addgene_id": "159880", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -123650,7 +131049,10 @@ "plasmid_name": "pSLIKneo 3XFLAG-wtGATA6-3XAU1_RNAi resistant", "sequence-type": "depositor-full", "addgene_id": "72616", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "att_sites": [ "attB1", @@ -123718,7 +131120,10 @@ "plasmid_name": "TFORF3543", "sequence-type": "depositor-full", "addgene_id": "145019", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -123778,7 +131183,10 @@ "plasmid_name": "pdestMB14_hsp-16.2p-grh-1-gfp", "sequence-type": "addgene-full", "addgene_id": "177762", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-27732-4", + "https://www.ncbi.nlm.nih.gov/pubmed/35013237" + ], "kit": null, "att_sites": [ "attB1", @@ -123822,7 +131230,10 @@ "plasmid_name": "pDONR221_SLCO4C1", "sequence-type": "addgene-full", "addgene_id": "132248", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -123853,7 +131264,10 @@ "plasmid_name": "pDEST-FRT-TO-GFP-PALB2 KR", "sequence-type": "depositor-full", "addgene_id": "71107", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1", @@ -123899,7 +131313,10 @@ "plasmid_name": "pMH-Cas9-gate", "sequence-type": "addgene-full", "addgene_id": "113742", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -123953,7 +131370,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS-Ala148 hygro", "sequence-type": "addgene-full", "addgene_id": "158636", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attB1", @@ -124019,7 +131439,10 @@ "plasmid_name": "pDONR223-ZNF76", "sequence-type": "addgene-full", "addgene_id": "88678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -124048,7 +131471,6 @@ "plasmid_name": "MECP2 - P376S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216601", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -124078,7 +131500,10 @@ "plasmid_name": "E3_pENTR_L3-L2_NG_G1333-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171732", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attL2", @@ -124114,7 +131539,6 @@ "plasmid_name": "pAG416-GAL-FUS-P431L", "sequence-type": "addgene-full", "addgene_id": "181717", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -124168,7 +131592,6 @@ "plasmid_name": "pcDNA3.1-ccdB-V5", "sequence-type": "addgene-full", "addgene_id": "214985", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -124221,7 +131644,10 @@ "plasmid_name": "pENTR_L1-YFP-Turbo-NES-L2", "sequence-type": "addgene-full", "addgene_id": "127349", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL1", @@ -124258,7 +131684,10 @@ "plasmid_name": "pDONR223_ATG5_WT", "sequence-type": "addgene-full", "addgene_id": "82246", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -124287,7 +131716,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0404-luc2", "sequence-type": "addgene-full", "addgene_id": "214631", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -124331,7 +131763,10 @@ "plasmid_name": "pDONR221-RHAG_STOP", "sequence-type": "depositor-full", "addgene_id": "161037", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161037.depositor-full.gb" }, @@ -124340,7 +131775,10 @@ "plasmid_name": "pDONR221_SLC35F1", "sequence-type": "addgene-full", "addgene_id": "132133", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -124371,7 +131809,10 @@ "plasmid_name": "pDEST40-2XHA-Src-K298M", "sequence-type": "addgene-full", "addgene_id": "140314", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -124423,7 +131864,10 @@ "plasmid_name": "pMuLE ENTR CMV Renilla Luciferase L5-L2", "sequence-type": "depositor-full", "addgene_id": "62186", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -124457,7 +131901,6 @@ "plasmid_name": "p667-UBC-AAK1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135255", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -124522,7 +131965,10 @@ "plasmid_name": "pAG415GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14362", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -124581,7 +132027,10 @@ "plasmid_name": "pDONR221_SPNS2", "sequence-type": "addgene-full", "addgene_id": "132307", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -124612,7 +132061,10 @@ "plasmid_name": "pMYH9-D1424H-FLAG", "sequence-type": "addgene-full", "addgene_id": "183513", - "references": [], + "references": [ + "https://doi.org/10.1186/1755-8417-1-5", + "https://www.ncbi.nlm.nih.gov/pubmed/19046415" + ], "kit": null, "file": "data/addgene_plasmids/183513.addgene-full.gb" }, @@ -124621,7 +132073,10 @@ "plasmid_name": "pSC39", "sequence-type": "addgene-full", "addgene_id": "104813", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -124665,7 +132120,10 @@ "plasmid_name": "pENTR-LUC (w158-1)", "sequence-type": "depositor-full", "addgene_id": "17473", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -124691,7 +132149,10 @@ "plasmid_name": "pDONR221-Cka1", "sequence-type": "addgene-full", "addgene_id": "99979", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attL1", @@ -124722,7 +132183,10 @@ "plasmid_name": "pYPQ144-ZmUbi-tRNA", "sequence-type": "addgene-full", "addgene_id": "158402", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00953-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34168320" + ], "kit": null, "att_sites": [ "attL2", @@ -124754,7 +132218,9 @@ "plasmid_name": "pDestTol2-QUAS:NLS-GFP-he1.1:CFP", "sequence-type": "addgene-full", "addgene_id": "184815", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "att_sites": [ "attB1", @@ -124798,7 +132264,10 @@ "plasmid_name": "pAF020 p3E-2A-mCerulean", "sequence-type": "addgene-full", "addgene_id": "195974", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL3", @@ -124836,7 +132305,10 @@ "plasmid_name": "pDL191", "sequence-type": "addgene-full", "addgene_id": "175932", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -124860,7 +132332,10 @@ "plasmid_name": "pLenti X2 Hygro DEST (w17-1)", "sequence-type": "addgene-full", "addgene_id": "17295", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -124920,7 +132395,10 @@ "plasmid_name": "pINDUCER20-Flag-hSPDEF WT", "sequence-type": "addgene-full", "addgene_id": "100873", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2017.03.048", + "https://www.ncbi.nlm.nih.gov/pubmed/28390865" + ], "kit": null, "att_sites": [ "attB1", @@ -124973,7 +132451,10 @@ "plasmid_name": "pDONR223_PDPK1_WT", "sequence-type": "addgene-full", "addgene_id": "82309", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -125002,7 +132483,10 @@ "plasmid_name": "C122-E53: mClover3", "sequence-type": "addgene-full", "addgene_id": "162898", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -125030,7 +132514,10 @@ "plasmid_name": "pDEST-3xFLAG-Ubc7", "sequence-type": "addgene-full", "addgene_id": "212801", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.11.016", + "https://www.ncbi.nlm.nih.gov/pubmed/38103558" + ], "kit": null, "att_sites": [ "attB1", @@ -125073,7 +132560,10 @@ "plasmid_name": "PB-Pitx2", "sequence-type": "depositor-full", "addgene_id": "60668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "att_sites": [ "attB1", @@ -125113,7 +132603,10 @@ "plasmid_name": "MSCV-neo C-HAonly ZER1", "sequence-type": "addgene-full", "addgene_id": "191540", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "att_sites": [ "attB1", @@ -125158,7 +132651,10 @@ "plasmid_name": "mTALEAD nad7-1", "sequence-type": "addgene-full", "addgene_id": "210831", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "att_sites": [ "attB1", @@ -125197,7 +132693,6 @@ "plasmid_name": "pREP42xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79024", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -125241,7 +132736,10 @@ "plasmid_name": "pHAGE-IGF1R-F1057L", "sequence-type": "addgene-full", "addgene_id": "116414", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -125291,7 +132789,10 @@ "plasmid_name": "pLenti-Zyxin-A (aa139-564)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187693", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187693.addgene-full.gb" }, @@ -125300,7 +132801,6 @@ "plasmid_name": "IDG_CACNB3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161685", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -125359,7 +132859,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-STK4", "sequence-type": "addgene-full", "addgene_id": "172989", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172989.addgene-full.gb" }, @@ -125368,7 +132871,10 @@ "plasmid_name": "pDONR221_SLC6A16", "sequence-type": "addgene-full", "addgene_id": "132195", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -125399,7 +132905,10 @@ "plasmid_name": "C413-E19: attB4-mPol2p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162971", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -125433,7 +132942,10 @@ "plasmid_name": "pENTR223-BTRF1", "sequence-type": "addgene-full", "addgene_id": "195806", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -125462,7 +132974,10 @@ "plasmid_name": "Flag-HA-USP16", "sequence-type": "addgene-full", "addgene_id": "22595", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -125511,7 +133026,10 @@ "plasmid_name": "LRRC3_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176972", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -125563,7 +133081,6 @@ "plasmid_name": "g15s pD47", "sequence-type": "addgene-full", "addgene_id": "117464", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -125614,7 +133131,10 @@ "plasmid_name": "pCR8/GW/TOPO-ERF", "sequence-type": "addgene-full", "addgene_id": "98626", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -125643,7 +133163,10 @@ "plasmid_name": "pDONR223_GPS2_p.R102Q", "sequence-type": "addgene-full", "addgene_id": "81349", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -125675,7 +133198,10 @@ "plasmid_name": "pDONR223_BECN1_WT", "sequence-type": "addgene-full", "addgene_id": "82100", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL2" @@ -125702,7 +133228,10 @@ "plasmid_name": "1455_pDEST_miniTol2_R4-R2_MCS", "sequence-type": "addgene-full", "addgene_id": "171794", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "att_sites": [ "attR2", @@ -125748,7 +133277,10 @@ "plasmid_name": "pDONR221_SLC39A10", "sequence-type": "addgene-full", "addgene_id": "132275", - "references": [], + "references": [ + "https://doi.org/10.1007/s10534-022-00474-6", + "https://www.ncbi.nlm.nih.gov/pubmed/36454509" + ], "kit": null, "att_sites": [ "attL1", @@ -125779,7 +133311,10 @@ "plasmid_name": "pHAGE-PIK3CD-E1021K", "sequence-type": "addgene-full", "addgene_id": "116566", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -125833,7 +133368,10 @@ "plasmid_name": "pDONR223_SERPINB5_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83002", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -125862,7 +133400,10 @@ "plasmid_name": "pLenti-PGK-Hygro-amp-sgRNA-resistant PBRM1", "sequence-type": "addgene-full", "addgene_id": "107407", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1619726114", + "https://www.ncbi.nlm.nih.gov/pubmed/28082722" + ], "kit": null, "att_sites": [ "attB1", @@ -125921,7 +133462,10 @@ "plasmid_name": "tetO-MYOCD", "sequence-type": "addgene-full", "addgene_id": "170696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -125983,7 +133527,10 @@ "plasmid_name": "pAG414GPD-GmCYP722C(pYL887)", "sequence-type": "addgene-full", "addgene_id": "178298", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -126035,7 +133582,9 @@ "plasmid_name": "pLe6\u0394 -hLP-mcs/(EGFP-IresPuro-hInt)", "sequence-type": "depositor-full", "addgene_id": "64314", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24146984" + ], "kit": null, "att_sites": [ "attB1", @@ -126100,7 +133649,10 @@ "plasmid_name": "pDONR-IAA28_no stop", "sequence-type": "depositor-full", "addgene_id": "83861", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -126131,7 +133683,9 @@ "plasmid_name": "p5E-dusp6", "sequence-type": "depositor-full", "addgene_id": "82584", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24643048" + ], "kit": null, "att_sites": [ "attL4", @@ -126166,7 +133720,10 @@ "plasmid_name": "pT2-cryR;lmo2CE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90153", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -126214,7 +133771,10 @@ "plasmid_name": "pDONR221-SLC35B2_STOP", "sequence-type": "addgene-full", "addgene_id": "161417", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -126245,7 +133805,6 @@ "plasmid_name": "pHAGE-CMV-Flag-RIOK3-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170576", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -126298,7 +133857,10 @@ "plasmid_name": "pHAGE-SRSF2-P95R", "sequence-type": "addgene-full", "addgene_id": "116686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -126348,7 +133910,9 @@ "plasmid_name": "piggyBac-rtTA (4th_Gen)-SNCA(3K)-sfGFP-IRES-NGN2-puro (VK_1120)", "sequence-type": "addgene-full", "addgene_id": "209078", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.11.08.515615" + ], "kit": null, "att_sites": [ "attB1", @@ -126408,7 +133972,10 @@ "plasmid_name": "p35S::Cf-4-YFPc", "sequence-type": "addgene-full", "addgene_id": "86160", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "att_sites": [ "attB1", @@ -126441,7 +134008,6 @@ "plasmid_name": "p663-UBC-V5-CDK13_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135268", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -126506,7 +134072,6 @@ "plasmid_name": "IDG_PKD2L2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161623", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -126565,7 +134130,10 @@ "plasmid_name": "pYPQ151D10A-x3.7", "sequence-type": "addgene-full", "addgene_id": "124309", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "att_sites": [ "attL1", @@ -126599,7 +134167,6 @@ "plasmid_name": "R777-E251 Hs.RASSF1", "sequence-type": "depositor-full", "addgene_id": "70535", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -126627,7 +134194,10 @@ "plasmid_name": "pDONR223-ALK", "sequence-type": "addgene-full", "addgene_id": "23917", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -126658,7 +134228,10 @@ "plasmid_name": "pAG413GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14286", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -126719,7 +134292,10 @@ "plasmid_name": "pHAGE-IGF1R", "sequence-type": "addgene-full", "addgene_id": "116752", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -126769,7 +134345,10 @@ "plasmid_name": "pCK011 p5E exorh", "sequence-type": "addgene-full", "addgene_id": "195949", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL4", @@ -126800,7 +134379,10 @@ "plasmid_name": "pET-DEST42 -SSRP1", "sequence-type": "addgene-full", "addgene_id": "170439", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.05.099", + "https://www.ncbi.nlm.nih.gov/pubmed/31242411" + ], "kit": null, "att_sites": [ "attB1", @@ -126839,7 +134421,6 @@ "plasmid_name": "pLenti6.3_HES4", "sequence-type": "addgene-full", "addgene_id": "124072", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -126900,7 +134481,10 @@ "plasmid_name": "pDONR221_SLC25A37", "sequence-type": "addgene-full", "addgene_id": "132041", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -126931,7 +134515,10 @@ "plasmid_name": "pAC147-pCR8-dCas9VP64", "sequence-type": "depositor-full", "addgene_id": "48219", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attL1", @@ -126964,7 +134551,6 @@ "plasmid_name": "pDONR221-cxadr", "sequence-type": "addgene-full", "addgene_id": "192734", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -126995,7 +134581,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp9", "sequence-type": "depositor-full", "addgene_id": "168872", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -127024,7 +134613,10 @@ "plasmid_name": "pHAGE-MAP2K1-S222A", "sequence-type": "addgene-full", "addgene_id": "116429", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -127074,7 +134666,10 @@ "plasmid_name": "pDONR223-MCU-E264A", "sequence-type": "depositor-full", "addgene_id": "31730", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "att_sites": [ "attL1", @@ -127103,7 +134698,6 @@ "plasmid_name": "pAG426GAL-SARS-CoV-2_PLP", "sequence-type": "addgene-full", "addgene_id": "203509", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -127157,7 +134751,9 @@ "plasmid_name": "p5E-mfap4", "sequence-type": "depositor-full", "addgene_id": "70052", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "att_sites": [ "attL4", @@ -127190,7 +134786,10 @@ "plasmid_name": "pSF278", "sequence-type": "addgene-full", "addgene_id": "167673", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attL1", @@ -127226,7 +134825,10 @@ "plasmid_name": "pDONR221-SLC16A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161101", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -127257,7 +134859,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_R38Q", "sequence-type": "depositor-full", "addgene_id": "65094", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -127302,7 +134907,10 @@ "plasmid_name": "pDONR223_NFE2L2_p.G31A", "sequence-type": "addgene-full", "addgene_id": "81524", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -127334,7 +134942,10 @@ "plasmid_name": "TFORF3234", "sequence-type": "addgene-full", "addgene_id": "144710", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -127394,7 +135005,6 @@ "plasmid_name": "R777-E320 Hs.SOS2-nostop", "sequence-type": "depositor-full", "addgene_id": "70604", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -127422,7 +135032,10 @@ "plasmid_name": "actc1b-mKate2-rab39bb", "sequence-type": "addgene-full", "addgene_id": "109634", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -127464,7 +135077,10 @@ "plasmid_name": "pLX304_zeo_mmIrf1", "sequence-type": "addgene-full", "addgene_id": "160098", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -127523,7 +135139,10 @@ "plasmid_name": "pHAGE-FGFR3-V788M", "sequence-type": "addgene-full", "addgene_id": "116390", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -127573,7 +135192,10 @@ "plasmid_name": "pGWT35S-AtOEP7(1-50aa)-VC155", "sequence-type": "addgene-full", "addgene_id": "194046", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "att_sites": [ "attB1", @@ -127617,7 +135239,9 @@ "plasmid_name": "pME-FlEx switch", "sequence-type": "depositor-full", "addgene_id": "82406", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL1", @@ -127650,7 +135274,6 @@ "plasmid_name": "pAM-35s-CBL1-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102393", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -127683,7 +135306,9 @@ "plasmid_name": "pME_Golgi-BFP_P2A_H2A_tdiRFP (JDW 1079)", "sequence-type": "addgene-full", "addgene_id": "224491", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -127717,7 +135342,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP9", "sequence-type": "addgene-full", "addgene_id": "154408", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -127747,7 +135375,10 @@ "plasmid_name": "pDR3.01", "sequence-type": "depositor-full", "addgene_id": "19369", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -127770,7 +135401,10 @@ "plasmid_name": "plenti-CAG-IKZF1-V1-Q146H-FLAG-IRES-GFP", "sequence-type": "depositor-full", "addgene_id": "69048", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -127832,7 +135466,10 @@ "plasmid_name": "DIMT1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98330", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -127892,7 +135529,10 @@ "plasmid_name": "pGWB510", "sequence-type": "depositor-full", "addgene_id": "74852", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -127938,7 +135578,10 @@ "plasmid_name": "pYPQ265L2", "sequence-type": "addgene-full", "addgene_id": "174000", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "att_sites": [ "attL1", @@ -127971,7 +135614,10 @@ "plasmid_name": "MAC-FURIN", "sequence-type": "addgene-full", "addgene_id": "158386", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -128017,7 +135663,10 @@ "plasmid_name": "VRK1-dTag-puro", "sequence-type": "addgene-full", "addgene_id": "199651", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "att_sites": [ "attB1", @@ -128077,7 +135726,10 @@ "plasmid_name": "pSGE_652_S2-1-ap_dCP", "sequence-type": "depositor-full", "addgene_id": "71161", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -128110,7 +135762,10 @@ "plasmid_name": "pENTR R4-QF-R3", "sequence-type": "depositor-full", "addgene_id": "32310", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attR3", @@ -128141,7 +135796,10 @@ "plasmid_name": "pEBTet-SNAP-CCCAP", "sequence-type": "addgene-full", "addgene_id": "136798", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -128188,7 +135846,6 @@ "plasmid_name": "R777-E079 Hs.EXOC7", "sequence-type": "depositor-full", "addgene_id": "70363", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -128216,7 +135873,10 @@ "plasmid_name": "pSlick-Neo-RECK", "sequence-type": "addgene-full", "addgene_id": "121986", - "references": [], + "references": [ + "https://doi.org/10.18632/oncotarget.25236", + "https://www.ncbi.nlm.nih.gov/pubmed/29805750" + ], "kit": null, "att_sites": [ "attB1", @@ -128283,7 +135943,10 @@ "plasmid_name": "pDONR223_KEAP1_p.D389Y", "sequence-type": "addgene-full", "addgene_id": "82842", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -128312,7 +135975,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hSFRP1(aa181-314)-his", "sequence-type": "addgene-full", "addgene_id": "189549", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -128362,7 +136024,10 @@ "plasmid_name": "pME-nls", "sequence-type": "addgene-full", "addgene_id": "108882", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "att_sites": [ "attL1", @@ -128395,7 +136060,10 @@ "plasmid_name": "pUBQ10:AtFLS2", "sequence-type": "addgene-full", "addgene_id": "202186", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "file": "data/addgene_plasmids/202186.addgene-full.gb" }, @@ -128404,7 +136072,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a P", "sequence-type": "addgene-full", "addgene_id": "89385", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89385.addgene-full.gb" }, @@ -128413,7 +136084,10 @@ "plasmid_name": "pDONR223_ACAT2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82996", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1" @@ -128440,7 +136114,10 @@ "plasmid_name": "JL002: pMVP/eGFP-DEST", "sequence-type": "addgene-full", "addgene_id": "121852", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -128486,7 +136163,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-43-44 context", "sequence-type": "depositor-full", "addgene_id": "46654", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -128536,7 +136216,10 @@ "plasmid_name": "dpYPQ230-D156R-ABE4", "sequence-type": "addgene-full", "addgene_id": "195370", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "att_sites": [ "attL1", @@ -128568,7 +136251,6 @@ "plasmid_name": "pENTRY4_ WRKY28_2", "sequence-type": "addgene-full", "addgene_id": "126900", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -128603,7 +136285,10 @@ "plasmid_name": "pDONR 221-FG1 (NON-STOP)", "sequence-type": "addgene-full", "addgene_id": "118681", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attL1", @@ -128634,7 +136319,10 @@ "plasmid_name": "p8126 MSCV-P C-FlagHA 16E7 R77S", "sequence-type": "addgene-full", "addgene_id": "163305", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "att_sites": [ "attB1", @@ -128680,7 +136368,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 N_nostop", "sequence-type": "addgene-full", "addgene_id": "168542", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -128709,7 +136400,9 @@ "plasmid_name": "pDONR221-MARK4(v3)", "sequence-type": "addgene-full", "addgene_id": "166187", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -128740,7 +136433,10 @@ "plasmid_name": "TFORF3494", "sequence-type": "addgene-full", "addgene_id": "144970", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -128800,7 +136496,10 @@ "plasmid_name": "pENTR4-FKBP12DD N-term B (w385-4)", "sequence-type": "depositor-full", "addgene_id": "17415", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -128825,7 +136524,10 @@ "plasmid_name": "pCM5.49", "sequence-type": "depositor-full", "addgene_id": "21391", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -128856,7 +136558,10 @@ "plasmid_name": "pENTR-CASK", "sequence-type": "addgene-full", "addgene_id": "221427", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -128886,7 +136591,10 @@ "plasmid_name": "pAG304GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14304", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -128944,7 +136652,10 @@ "plasmid_name": "pDONR223_BRAF_p.G466V", "sequence-type": "addgene-full", "addgene_id": "81710", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -128977,7 +136688,9 @@ "plasmid_name": "p3E-WPRE-SV40-pA (JDW 922)", "sequence-type": "addgene-full", "addgene_id": "224545", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -129015,7 +136728,10 @@ "plasmid_name": "pSLIK_hygro_BirA", "sequence-type": "addgene-full", "addgene_id": "136537", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attB1", @@ -129081,7 +136797,10 @@ "plasmid_name": "pDONR221-SLC52A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161335", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -129112,7 +136831,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp7", "sequence-type": "addgene-full", "addgene_id": "168916", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -129141,7 +136863,10 @@ "plasmid_name": "TFORF3048", "sequence-type": "addgene-full", "addgene_id": "144524", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -129201,7 +136926,10 @@ "plasmid_name": "pDONR223_DARC_p.T211S", "sequence-type": "addgene-full", "addgene_id": "82750", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -129230,7 +136958,10 @@ "plasmid_name": "IG401: pMVP (L1-R5) RIP", "sequence-type": "addgene-full", "addgene_id": "121694", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -129261,7 +136992,10 @@ "plasmid_name": "pDONR223_KEAP1_p.E611D", "sequence-type": "addgene-full", "addgene_id": "81519", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -129291,7 +137025,10 @@ "plasmid_name": "MLKP1delTM", "sequence-type": "addgene-full", "addgene_id": "130841", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attB1", @@ -129327,7 +137064,10 @@ "plasmid_name": "TFORF3423", "sequence-type": "addgene-full", "addgene_id": "144899", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -129387,7 +137127,10 @@ "plasmid_name": "JDW 822 (pDONR221-V5-mScarlet-I-KRAS4A-WT)", "sequence-type": "addgene-full", "addgene_id": "156405", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attL1", @@ -129423,7 +137166,10 @@ "plasmid_name": "actc1b-mKate2-rab20", "sequence-type": "addgene-full", "addgene_id": "109609", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -129465,7 +137211,6 @@ "plasmid_name": "pDESTP10aw", "sequence-type": "depositor-full", "addgene_id": "41439", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -129495,7 +137240,6 @@ "plasmid_name": "pENT L1-Kozak-ERK-KTR-L2", "sequence-type": "addgene-full", "addgene_id": "186353", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -129526,7 +137270,10 @@ "plasmid_name": "pLX307/PTPN11 E76G", "sequence-type": "addgene-full", "addgene_id": "140862", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0209", + "https://www.ncbi.nlm.nih.gov/pubmed/31771968" + ], "kit": null, "att_sites": [ "attB1", @@ -129586,7 +137333,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND S297A", "sequence-type": "addgene-full", "addgene_id": "169966", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -129617,7 +137367,10 @@ "plasmid_name": "pDONR221-SLC39A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161247", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -129648,7 +137401,10 @@ "plasmid_name": "pLXI_TRC403 LacZ", "sequence-type": "addgene-full", "addgene_id": "111184", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.44161", + "https://www.ncbi.nlm.nih.gov/pubmed/30860482" + ], "kit": null, "att_sites": [ "attB1", @@ -129705,7 +137461,6 @@ "plasmid_name": "pDEST26-PPP2CB-C-HA", "sequence-type": "addgene-full", "addgene_id": "195179", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -129754,7 +137509,10 @@ "plasmid_name": "pDONR223_KRAS_p.A59G", "sequence-type": "addgene-full", "addgene_id": "81662", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -129787,7 +137545,10 @@ "plasmid_name": "pTC-CMV-Tet-YAP", "sequence-type": "addgene-full", "addgene_id": "85579", - "references": [], + "references": [ + "https://doi.org/10.1002/jgm.2940", + "https://www.ncbi.nlm.nih.gov/pubmed/28009940" + ], "kit": null, "att_sites": [ "attB1", @@ -129837,7 +137598,10 @@ "plasmid_name": "p3E-Dnm2a-DN", "sequence-type": "addgene-full", "addgene_id": "109572", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -129868,7 +137632,10 @@ "plasmid_name": "TFORF2980", "sequence-type": "addgene-full", "addgene_id": "144456", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -129928,7 +137695,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-Spike", "sequence-type": "addgene-full", "addgene_id": "168864", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -129958,7 +137728,10 @@ "plasmid_name": "pHAGE-ERBB2-K716E", "sequence-type": "addgene-full", "addgene_id": "116336", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -130012,7 +137785,10 @@ "plasmid_name": "MiniCoopR mitfa:NRAS", "sequence-type": "addgene-full", "addgene_id": "118847", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -130050,7 +137826,10 @@ "plasmid_name": "TFORF3326", "sequence-type": "addgene-full", "addgene_id": "144802", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -130110,7 +137889,6 @@ "plasmid_name": "R777-E003 Hs.AKT2", "sequence-type": "depositor-full", "addgene_id": "70287", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -130138,7 +137916,10 @@ "plasmid_name": "p3E-rab33ba", "sequence-type": "addgene-full", "addgene_id": "109692", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -130169,7 +137950,10 @@ "plasmid_name": "pcDNA3.2/NS3", "sequence-type": "addgene-full", "addgene_id": "120822", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -130219,7 +138003,10 @@ "plasmid_name": "pDONR221_SLC10A4", "sequence-type": "addgene-full", "addgene_id": "131943", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -130250,7 +138037,10 @@ "plasmid_name": "pDONR223_EYS_p.F336L", "sequence-type": "addgene-full", "addgene_id": "81582", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -130282,7 +138072,10 @@ "plasmid_name": "pEBTet-SNAP-Cep63", "sequence-type": "addgene-full", "addgene_id": "136811", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -130329,7 +138122,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 N_stop", "sequence-type": "addgene-full", "addgene_id": "168604", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -130358,7 +138154,10 @@ "plasmid_name": "pDONR-IAA12_no stop", "sequence-type": "depositor-full", "addgene_id": "83849", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -130389,7 +138188,10 @@ "plasmid_name": "pME-GcAMP5", "sequence-type": "addgene-full", "addgene_id": "126569", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201905065", + "https://www.ncbi.nlm.nih.gov/pubmed/34633413" + ], "kit": null, "att_sites": [ "attL1", @@ -130426,7 +138228,10 @@ "plasmid_name": "pMOS009: QuasAr2-mOrange2 voltage sensor (plasma membrane)", "sequence-type": "addgene-full", "addgene_id": "163043", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -130487,7 +138292,10 @@ "plasmid_name": "TFORF3106", "sequence-type": "addgene-full", "addgene_id": "144582", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -130547,7 +138355,10 @@ "plasmid_name": "AAV-short_BrokenHeart (no BC)", "sequence-type": "addgene-full", "addgene_id": "86950", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1918241117", + "https://www.ncbi.nlm.nih.gov/pubmed/32300008" + ], "kit": null, "att_sites": [ "attB1", @@ -130595,7 +138406,6 @@ "plasmid_name": "pHAGE pGK MitoFlux (pSu9-HaloTag7-mGFP-STOP)", "sequence-type": "addgene-full", "addgene_id": "215011", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -130661,7 +138471,10 @@ "plasmid_name": "pDEST17-UbE2S", "sequence-type": "addgene-full", "addgene_id": "15807", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "att_sites": [ "attB1", @@ -130693,7 +138506,10 @@ "plasmid_name": "pDONR223_HIST1H3B_WT", "sequence-type": "addgene-full", "addgene_id": "81802", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -130725,7 +138541,10 @@ "plasmid_name": "pDONR221-ZNF705B", "sequence-type": "depositor-full", "addgene_id": "101504", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -130756,7 +138575,10 @@ "plasmid_name": "pDONR221-SLC47A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161393", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -130787,7 +138609,10 @@ "plasmid_name": "pDONR223_AKT1_p.D44N", "sequence-type": "addgene-full", "addgene_id": "81456", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -130820,7 +138645,10 @@ "plasmid_name": "pLX-EF1a_GFP", "sequence-type": "addgene-full", "addgene_id": "221481", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -130884,7 +138712,10 @@ "plasmid_name": "pDONR221-SLC10A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161073", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -130915,7 +138746,10 @@ "plasmid_name": "plenti-px330-CRBN-T2-pGK-Pur", "sequence-type": "addgene-full", "addgene_id": "107383", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -130969,7 +138803,10 @@ "plasmid_name": "p3E-rab26-CA", "sequence-type": "addgene-full", "addgene_id": "109746", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -131000,7 +138837,10 @@ "plasmid_name": "TFORF3186", "sequence-type": "addgene-full", "addgene_id": "144662", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -131060,7 +138900,10 @@ "plasmid_name": "pDONR221 Mak11", "sequence-type": "depositor-full", "addgene_id": "63761", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -131092,7 +138935,10 @@ "plasmid_name": "pDONR221_SLC12A9", "sequence-type": "addgene-full", "addgene_id": "131897", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -131123,7 +138969,10 @@ "plasmid_name": "pHAGE-EGFR-M766_A767insAI", "sequence-type": "addgene-full", "addgene_id": "116279", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -131177,7 +139026,6 @@ "plasmid_name": "R777-E269 Hs.RASSF9", "sequence-type": "depositor-full", "addgene_id": "70553", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -131205,7 +139053,10 @@ "plasmid_name": "pDONR-53BP1 1-1972 28A", "sequence-type": "depositor-full", "addgene_id": "53447", - "references": [], + "references": [ + "https://doi.org/10.1038/nature12318", + "https://www.ncbi.nlm.nih.gov/pubmed/23760478" + ], "kit": null, "att_sites": [ "attL1", @@ -131236,7 +139087,10 @@ "plasmid_name": "HM001: pMVP (R4-R3) Cre", "sequence-type": "addgene-full", "addgene_id": "121740", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -131268,7 +139122,9 @@ "plasmid_name": "pMpGWB422", "sequence-type": "depositor-full", "addgene_id": "68687", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68687.depositor-full.gb" }, @@ -131277,7 +139133,10 @@ "plasmid_name": "pDONR223_FAIM_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82930", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -131306,7 +139165,10 @@ "plasmid_name": "R620-M03-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-541)-His6 N501Y", "sequence-type": "addgene-full", "addgene_id": "170189", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -131360,7 +139222,10 @@ "plasmid_name": "A1-LCD+7R", "sequence-type": "addgene-full", "addgene_id": "178667", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -131395,7 +139260,10 @@ "plasmid_name": "pDONR223_SAMHD1_WT", "sequence-type": "addgene-full", "addgene_id": "81899", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -131427,7 +139295,10 @@ "plasmid_name": "pDONR221-SLC38A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161308", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -131458,7 +139329,10 @@ "plasmid_name": "TFORF3043", "sequence-type": "addgene-full", "addgene_id": "144519", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -131518,7 +139392,10 @@ "plasmid_name": "pDONR221-SLC26A9_STOP", "sequence-type": "depositor-full", "addgene_id": "161306", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -131549,7 +139426,10 @@ "plasmid_name": "CPSF4-1", "sequence-type": "addgene-full", "addgene_id": "155478", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -131592,7 +139472,10 @@ "plasmid_name": "pHAGE-BRAF-T599_V600insP", "sequence-type": "addgene-full", "addgene_id": "116199", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -131647,7 +139530,10 @@ "plasmid_name": "pHAGE-ALDH5A1__MAP3K5", "sequence-type": "addgene-full", "addgene_id": "116807", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -131698,7 +139584,10 @@ "plasmid_name": "pENTR-KAT14-547-782", "sequence-type": "addgene-full", "addgene_id": "118376", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attL1", @@ -131729,7 +139618,10 @@ "plasmid_name": "pYPQ292-D570A-SRDX", "sequence-type": "addgene-full", "addgene_id": "129684", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -131761,7 +139653,10 @@ "plasmid_name": "pHAGE-3FLAG-RAB5A", "sequence-type": "addgene-full", "addgene_id": "176488", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "att_sites": [ "attB1", @@ -131812,7 +139707,10 @@ "plasmid_name": "R989-X27-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12C", "sequence-type": "addgene-full", "addgene_id": "159547", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -131859,7 +139757,10 @@ "plasmid_name": "EGFP-Hu_Plk5(W207F)", "sequence-type": "addgene-full", "addgene_id": "136320", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.00607-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21245385" + ], "kit": null, "att_sites": [ "attB1", @@ -131912,7 +139813,9 @@ "plasmid_name": "pLenti Lifeact-iRFP670 BlastR", "sequence-type": "addgene-full", "addgene_id": "84385", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "att_sites": [ "attB1", @@ -131976,7 +139879,10 @@ "plasmid_name": "pYPQ262m", "sequence-type": "addgene-full", "addgene_id": "161522", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-00827-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33398158" + ], "kit": null, "att_sites": [ "attL1", @@ -132010,7 +139916,10 @@ "plasmid_name": "HS-DN-Ect2", "sequence-type": "addgene-full", "addgene_id": "105956", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.08.062", + "https://www.ncbi.nlm.nih.gov/pubmed/26411683" + ], "kit": null, "att_sites": [ "attB1", @@ -132059,7 +139968,10 @@ "plasmid_name": "pLX304-BCL-XL-Y195F", "sequence-type": "addgene-full", "addgene_id": "203573", - "references": [], + "references": [ + "https://doi.org/10.1158/1078-0432.CCR-22-0669", + "https://www.ncbi.nlm.nih.gov/pubmed/35776130" + ], "kit": null, "att_sites": [ "attB1", @@ -132118,7 +140030,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir28-1", "sequence-type": "depositor-full", "addgene_id": "46684", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -132168,7 +140083,6 @@ "plasmid_name": "BirA(R118G)-HA destination vector", "sequence-type": "addgene-full", "addgene_id": "53581", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -132224,7 +140138,10 @@ "plasmid_name": "pDONR221 NLRP1 S1213A", "sequence-type": "addgene-full", "addgene_id": "166824", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -132257,7 +140174,10 @@ "plasmid_name": "pDONR221 DPP9L", "sequence-type": "addgene-full", "addgene_id": "166790", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -132288,7 +140208,10 @@ "plasmid_name": "pHAGE-PDGFRA-Y288C", "sequence-type": "addgene-full", "addgene_id": "116453", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -132338,7 +140261,9 @@ "plasmid_name": "pRL056 pDESTattB_exorh:EGFP", "sequence-type": "addgene-full", "addgene_id": "213510", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.12.08.570868" + ], "kit": null, "att_sites": [ "attR3", @@ -132387,7 +140312,10 @@ "plasmid_name": "pMx/ATP11B-HA", "sequence-type": "addgene-full", "addgene_id": "209236", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -132422,7 +140350,10 @@ "plasmid_name": "pENTR-L5-oPRE-L2", "sequence-type": "depositor-full", "addgene_id": "32414", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32414.depositor-full.gb" }, @@ -132431,7 +140362,10 @@ "plasmid_name": "pLVpuro-CMV-N-mCherry", "sequence-type": "addgene-full", "addgene_id": "123221", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attR1", @@ -132496,7 +140430,10 @@ "plasmid_name": "pME-eSIBR", "sequence-type": "depositor-full", "addgene_id": "71665", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkv1246", + "https://www.ncbi.nlm.nih.gov/pubmed/26582923" + ], "kit": null, "att_sites": [ "attL1", @@ -132528,7 +140465,6 @@ "plasmid_name": "p3E turquoise2", "sequence-type": "addgene-full", "addgene_id": "135212", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -132563,7 +140499,10 @@ "plasmid_name": "pDESTtol2pACrymCherry", "sequence-type": "addgene-full", "addgene_id": "64023", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22385", + "https://www.ncbi.nlm.nih.gov/pubmed/23444339" + ], "kit": null, "att_sites": [ "attR3", @@ -132607,7 +140546,6 @@ "plasmid_name": "R777-E183 Hs.PIN1", "sequence-type": "depositor-full", "addgene_id": "70467", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -132635,7 +140573,6 @@ "plasmid_name": "IDG_CHRNB1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161659", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -132694,7 +140631,10 @@ "plasmid_name": "pRU61", "sequence-type": "addgene-full", "addgene_id": "167692", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -132741,7 +140681,10 @@ "plasmid_name": "pMuLE ENTR U6 stuffer sgRNA scaffold L5-L2", "sequence-type": "depositor-full", "addgene_id": "62130", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -132778,7 +140721,10 @@ "plasmid_name": "pDONR221-SLC2A7_STOP", "sequence-type": "depositor-full", "addgene_id": "161232", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -132809,7 +140755,6 @@ "plasmid_name": "pDONR221-CTSS", "sequence-type": "addgene-full", "addgene_id": "158445", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -132838,7 +140783,10 @@ "plasmid_name": "pHAGE-CTCF", "sequence-type": "addgene-full", "addgene_id": "116728", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -132888,7 +140836,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP9", "sequence-type": "addgene-full", "addgene_id": "169383", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -132931,7 +140878,10 @@ "plasmid_name": "p7VP1", "sequence-type": "depositor-full", "addgene_id": "24726", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2010.05.006", + "https://www.ncbi.nlm.nih.gov/pubmed/20542254" + ], "kit": null, "att_sites": [ "attB1", @@ -132969,7 +140919,10 @@ "plasmid_name": "pAFMW-AthHEN1", "sequence-type": "addgene-full", "addgene_id": "104980", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4610", + "https://www.ncbi.nlm.nih.gov/pubmed/29481550" + ], "kit": null, "att_sites": [ "attB1", @@ -132999,7 +140952,10 @@ "plasmid_name": "pDONR221-LETMD1", "sequence-type": "addgene-full", "addgene_id": "132294", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -133030,7 +140986,10 @@ "plasmid_name": "pAG414GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14167", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -133092,7 +141051,10 @@ "plasmid_name": "pENTR-li-p33_RS-CLIP", "sequence-type": "addgene-full", "addgene_id": "104634", - "references": [], + "references": [ + "https://doi.org/10.1080/2162402X.2018.1558663", + "https://www.ncbi.nlm.nih.gov/pubmed/30723591" + ], "kit": null, "att_sites": [ "attL1", @@ -133123,7 +141085,10 @@ "plasmid_name": "pLVX-EGFP-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128652", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -133176,7 +141141,10 @@ "plasmid_name": "pDONR221_SLC8A2", "sequence-type": "addgene-full", "addgene_id": "132174", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -133207,7 +141175,10 @@ "plasmid_name": "pDONR221-kcnk20", "sequence-type": "addgene-full", "addgene_id": "209002", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -133238,7 +141209,10 @@ "plasmid_name": "pMEnrp1bP1gfp", "sequence-type": "addgene-full", "addgene_id": "90129", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL1", @@ -133275,7 +141249,10 @@ "plasmid_name": "pDONR223_CDKN1A_WT", "sequence-type": "addgene-full", "addgene_id": "82201", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -133305,7 +141282,10 @@ "plasmid_name": "Flag-HA-USP21", "sequence-type": "addgene-full", "addgene_id": "22574", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -133350,7 +141330,10 @@ "plasmid_name": "pENTR1A mKate2-hu_ncOGT K842M", "sequence-type": "addgene-full", "addgene_id": "154284", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "att_sites": [ "attB1", @@ -133378,7 +141361,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PIK3C2G_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170597", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -133444,7 +141426,10 @@ "plasmid_name": "pHAGE-RET-G533D", "sequence-type": "addgene-full", "addgene_id": "116667", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -133493,7 +141478,6 @@ "plasmid_name": "R777-E145 Hs.NRAS", "sequence-type": "depositor-full", "addgene_id": "70429", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -133521,7 +141505,10 @@ "plasmid_name": "pGWB552", "sequence-type": "depositor-full", "addgene_id": "74882", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -133570,7 +141557,10 @@ "plasmid_name": "pDONR223-TRPM7", "sequence-type": "addgene-full", "addgene_id": "23476", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -133602,7 +141592,10 @@ "plasmid_name": "pGW-GOI-TurboID-GFP", "sequence-type": "addgene-full", "addgene_id": "209379", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "att_sites": [ "attR1", @@ -133654,7 +141647,10 @@ "plasmid_name": "pHAGE-PIK3R1-E439delE", "sequence-type": "addgene-full", "addgene_id": "116587", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -133705,7 +141701,10 @@ "plasmid_name": "pGWT35S-mCherry", "sequence-type": "addgene-full", "addgene_id": "182582", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "att_sites": [ "attB1", @@ -133750,7 +141749,10 @@ "plasmid_name": "pDONR223_CPXCR1_p.A56S", "sequence-type": "addgene-full", "addgene_id": "81333", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -133782,7 +141784,10 @@ "plasmid_name": "pAG304GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14400", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -133840,7 +141845,10 @@ "plasmid_name": "PTPRA_deltaD2-GFP fusion", "sequence-type": "addgene-full", "addgene_id": "139641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -133887,7 +141895,10 @@ "plasmid_name": "pENTR221-FOS", "sequence-type": "addgene-full", "addgene_id": "79511", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -133918,7 +141929,10 @@ "plasmid_name": "pDONR221_SLC25A41", "sequence-type": "addgene-full", "addgene_id": "132006", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -133949,7 +141963,10 @@ "plasmid_name": "pCPP3416", "sequence-type": "addgene-full", "addgene_id": "128720", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -133980,7 +141997,10 @@ "plasmid_name": "pDONR223_AKT3_WT", "sequence-type": "addgene-full", "addgene_id": "82093", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -134012,7 +142032,10 @@ "plasmid_name": "pg-ODD-EGFP", "sequence-type": "addgene-full", "addgene_id": "87211", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M113.500405", + "https://www.ncbi.nlm.nih.gov/pubmed/24394419" + ], "kit": null, "att_sites": [ "attB1", @@ -134054,7 +142077,10 @@ "plasmid_name": "pGFP-Rab8A[T22N]", "sequence-type": "addgene-full", "addgene_id": "24899", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.053", + "https://www.ncbi.nlm.nih.gov/pubmed/17574030" + ], "kit": null, "att_sites": [ "attB1", @@ -134106,7 +142132,10 @@ "plasmid_name": "TFORF3511", "sequence-type": "depositor-full", "addgene_id": "144987", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144987.depositor-full.gb" }, @@ -134115,7 +142144,9 @@ "plasmid_name": "p3E-mKate2-myc no-pA", "sequence-type": "depositor-full", "addgene_id": "80812", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -134148,7 +142179,10 @@ "plasmid_name": "pACT2-Mrt4", "sequence-type": "addgene-full", "addgene_id": "99998", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attB1", @@ -134184,7 +142218,10 @@ "plasmid_name": "pDONR221 NLRP1 R726W", "sequence-type": "addgene-full", "addgene_id": "166819", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -134217,7 +142254,6 @@ "plasmid_name": "R777-E299 Hs.RPS6KB2", "sequence-type": "depositor-full", "addgene_id": "70583", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -134246,7 +142282,10 @@ "plasmid_name": "pAG303GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14230", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -134301,7 +142340,10 @@ "plasmid_name": "p5E-QUASM1", "sequence-type": "addgene-full", "addgene_id": "155114", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155114.addgene-full.gb" }, @@ -134310,7 +142352,9 @@ "plasmid_name": "pMpGWB329", "sequence-type": "depositor-full", "addgene_id": "68657", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -134357,7 +142401,10 @@ "plasmid_name": "tetO-TBX20", "sequence-type": "addgene-full", "addgene_id": "170705", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -134419,7 +142466,6 @@ "plasmid_name": "IDG_CLCN6_OE_1", "sequence-type": "addgene-full", "addgene_id": "161664", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -134478,7 +142524,10 @@ "plasmid_name": "pDEST-hMeCP2-GFP", "sequence-type": "addgene-full", "addgene_id": "48078", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.038", + "https://www.ncbi.nlm.nih.gov/pubmed/23452848" + ], "kit": null, "att_sites": [ "attB1", @@ -134531,7 +142580,10 @@ "plasmid_name": "pDN0617 (pDEST-mEGFP C-term, NatR)", "sequence-type": "addgene-full", "addgene_id": "210484", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210484.addgene-full.gb" }, @@ -134540,7 +142592,10 @@ "plasmid_name": "Luciferase", "sequence-type": "addgene-full", "addgene_id": "213979", - "references": [], + "references": [ + "https://doi.org/10.1182/blood.2021011075", + "https://www.ncbi.nlm.nih.gov/pubmed/34019641" + ], "kit": null, "att_sites": [ "attB1", @@ -134596,7 +142651,10 @@ "plasmid_name": "pJJiaDEST-APEX2-GAL8", "sequence-type": "addgene-full", "addgene_id": "149519", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.009", + "https://www.ncbi.nlm.nih.gov/pubmed/29625033" + ], "kit": null, "att_sites": [ "attB1", @@ -134651,7 +142709,10 @@ "plasmid_name": "pHAGE-B2M", "sequence-type": "addgene-full", "addgene_id": "116715", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -134701,7 +142762,10 @@ "plasmid_name": "pDONR223_TP53_p.I195F", "sequence-type": "addgene-full", "addgene_id": "81395", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -134734,7 +142798,10 @@ "plasmid_name": "pCFJ2309 - [1-2] ENTR - Fluor - mCardinal(1 intron, syntrons(3), NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159861", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -134767,7 +142834,10 @@ "plasmid_name": "pHAGE-PIK3CA-P449_L455delPHGLEDL", "sequence-type": "addgene-full", "addgene_id": "116521", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -134821,7 +142891,10 @@ "plasmid_name": "pENTR-TARDBP-G287A", "sequence-type": "addgene-full", "addgene_id": "141323", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "att_sites": [ "attL1", @@ -134852,7 +142925,10 @@ "plasmid_name": "pWZL Neo Myr Flag PIM1", "sequence-type": "addgene-full", "addgene_id": "20579", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -134893,7 +142969,10 @@ "plasmid_name": "pLenti-PGK-flag-RAP1B-N17-puro", "sequence-type": "addgene-full", "addgene_id": "156169", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -134955,7 +143034,10 @@ "plasmid_name": "pOO2-GW", "sequence-type": "depositor-full", "addgene_id": "135097", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09606", + "https://www.ncbi.nlm.nih.gov/pubmed/21107422" + ], "kit": null, "att_sites": [ "attR1", @@ -134989,7 +143071,10 @@ "plasmid_name": "pDONR221_SLC2A8", "sequence-type": "addgene-full", "addgene_id": "132149", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132149.addgene-full.gb" }, @@ -134998,7 +143083,10 @@ "plasmid_name": "p5E-pax3a-5.4k", "sequence-type": "addgene-full", "addgene_id": "164966", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attL4", @@ -135033,7 +143121,10 @@ "plasmid_name": "Flag-HA-JOSD3", "sequence-type": "addgene-full", "addgene_id": "22549", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -135078,7 +143169,10 @@ "plasmid_name": "p5EmafbbE1", "sequence-type": "addgene-full", "addgene_id": "90114", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -135109,7 +143203,10 @@ "plasmid_name": "pDONR201-Eps8L2_1-183", "sequence-type": "addgene-full", "addgene_id": "196527", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attL1", @@ -135132,7 +143229,10 @@ "plasmid_name": "pENTR-R4R3-3xmRuby-C", "sequence-type": "depositor-full", "addgene_id": "113757", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -135167,7 +143267,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS2A", "sequence-type": "addgene-full", "addgene_id": "145343", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -135210,7 +143313,10 @@ "plasmid_name": "C417-E10: attB4-polyhedrinp>3xFLAG-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162936", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -135245,7 +143351,10 @@ "plasmid_name": "pPB-cT3G-cERP2-EGR1", "sequence-type": "addgene-full", "addgene_id": "192913", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -135291,7 +143400,9 @@ "plasmid_name": "pMpGWB228", "sequence-type": "depositor-full", "addgene_id": "68619", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -135339,7 +143450,10 @@ "plasmid_name": "pPB-DEST-R5R4-pNeo", "sequence-type": "addgene-full", "addgene_id": "141058", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR4", @@ -135389,7 +143503,10 @@ "plasmid_name": "pDONR221_SLC7A10", "sequence-type": "addgene-full", "addgene_id": "132232", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -135420,7 +143537,10 @@ "plasmid_name": "pENTR4 Ta-sro1 SR3", "sequence-type": "addgene-full", "addgene_id": "192547", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koac261", + "https://www.ncbi.nlm.nih.gov/pubmed/35980152" + ], "kit": null, "att_sites": [ "attL1", @@ -135444,7 +143564,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L5L2", "sequence-type": "addgene-full", "addgene_id": "113738", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -135478,7 +143601,10 @@ "plasmid_name": "pYPQ154", "sequence-type": "depositor-full", "addgene_id": "69305", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL1", @@ -135510,7 +143636,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L1L4", "sequence-type": "addgene-full", "addgene_id": "113736", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -135544,7 +143673,10 @@ "plasmid_name": "pDEST17-TARG1", "sequence-type": "addgene-full", "addgene_id": "172594", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attB1", @@ -135578,7 +143710,10 @@ "plasmid_name": "pDONR223_NFKB1_WT", "sequence-type": "addgene-full", "addgene_id": "82149", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -135607,7 +143742,10 @@ "plasmid_name": "MAC_N_ISX", "sequence-type": "addgene-full", "addgene_id": "187733", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -135652,7 +143790,10 @@ "plasmid_name": "pDONR223_RAC1_p.P29S", "sequence-type": "addgene-full", "addgene_id": "81300", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -135685,7 +143826,10 @@ "plasmid_name": "pLenti-jAspSnFR3-mRuby3-NLS", "sequence-type": "addgene-full", "addgene_id": "203494", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "att_sites": [ "attB1", @@ -135749,7 +143893,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (G20V)", "sequence-type": "addgene-full", "addgene_id": "119308", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -135801,7 +143948,10 @@ "plasmid_name": "pDL10", "sequence-type": "addgene-full", "addgene_id": "175892", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -135832,7 +143982,6 @@ "plasmid_name": "R777-E265 Hs.RASSF7", "sequence-type": "depositor-full", "addgene_id": "70549", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -135860,7 +144009,10 @@ "plasmid_name": "C511-E02: attB5r-NanoLuc-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162938", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -135888,7 +144040,10 @@ "plasmid_name": "pUC-DEST-R1R2", "sequence-type": "addgene-full", "addgene_id": "141056", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR1", @@ -135927,7 +144082,10 @@ "plasmid_name": "pMH-MYC", "sequence-type": "addgene-full", "addgene_id": "101765", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "att_sites": [ "attR1", @@ -135986,7 +144144,10 @@ "plasmid_name": "pLenti-PGK-RAP1A-E63-puro", "sequence-type": "addgene-full", "addgene_id": "156167", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -136046,7 +144207,10 @@ "plasmid_name": "pDONR221_SLC35A2", "sequence-type": "addgene-full", "addgene_id": "132147", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -136077,7 +144241,6 @@ "plasmid_name": "MECP2 - P152R in pENTR", "sequence-type": "addgene-full", "addgene_id": "216595", - "references": [], "kit": null, "file": "data/addgene_plasmids/216595.addgene-full.gb" }, @@ -136086,7 +144249,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(K72A)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128661", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -136136,7 +144302,10 @@ "plasmid_name": "Flag-HA-JOSD1", "sequence-type": "addgene-full", "addgene_id": "22547", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -136181,7 +144350,10 @@ "plasmid_name": "pDONR223_RELB_WT", "sequence-type": "addgene-full", "addgene_id": "82232", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -136210,7 +144382,10 @@ "plasmid_name": "pGL4_EGR1p-BC0129-luc2", "sequence-type": "addgene-full", "addgene_id": "214645", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -136253,7 +144428,10 @@ "plasmid_name": "pDONR201-Eps8L2_297-370", "sequence-type": "addgene-full", "addgene_id": "196529", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attL1", @@ -136276,7 +144454,10 @@ "plasmid_name": "pDEST-HisMBP", "sequence-type": "addgene-full", "addgene_id": "11085", - "references": [], + "references": [ + "https://doi.org/10.1110/ps.051718605", + "https://www.ncbi.nlm.nih.gov/pubmed/16322578" + ], "kit": null, "att_sites": [ "attR1", @@ -136325,7 +144506,10 @@ "plasmid_name": "MAC_N_LHX1", "sequence-type": "addgene-full", "addgene_id": "167775", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -136370,7 +144554,10 @@ "plasmid_name": "pDONR-IAA15_no stop", "sequence-type": "depositor-full", "addgene_id": "83853", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -136401,7 +144588,10 @@ "plasmid_name": "pLX302 OAS2-V5 puro", "sequence-type": "addgene-full", "addgene_id": "158642", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attB1", @@ -136462,7 +144652,6 @@ "plasmid_name": "pMS051", "sequence-type": "addgene-full", "addgene_id": "137025", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -136493,7 +144682,10 @@ "plasmid_name": "p5E_ngn1_LSE_C", "sequence-type": "addgene-full", "addgene_id": "199395", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "att_sites": [ "attL4", @@ -136524,7 +144716,10 @@ "plasmid_name": "pJH200_pE12_hyCal7-eGFP", "sequence-type": "addgene-full", "addgene_id": "160413", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -136559,7 +144754,6 @@ "plasmid_name": "pLEX307-TMPRSS11D-blast", "sequence-type": "addgene-full", "addgene_id": "158476", - "references": [], "kit": null, "file": "data/addgene_plasmids/158476.addgene-full.gb" }, @@ -136568,7 +144762,10 @@ "plasmid_name": "pDONR221_SLC39A2", "sequence-type": "addgene-full", "addgene_id": "132093", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132093.addgene-full.gb" }, @@ -136577,7 +144774,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-Swa1::RfA-HA", "sequence-type": "addgene-full", "addgene_id": "186405", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -136615,7 +144815,10 @@ "plasmid_name": "pJJiaDEST-APEX2", "sequence-type": "addgene-full", "addgene_id": "149517", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.009", + "https://www.ncbi.nlm.nih.gov/pubmed/29625033" + ], "kit": null, "att_sites": [ "attR1", @@ -136675,7 +144878,6 @@ "plasmid_name": "R777-E223 Hs.RAPGEF1", "sequence-type": "depositor-full", "addgene_id": "70507", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -136703,7 +144905,6 @@ "plasmid_name": "pENTR-R2L3-IRES-BSD-pA", "sequence-type": "addgene-full", "addgene_id": "139534", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -136740,7 +144941,10 @@ "plasmid_name": "pcDNA_DENV2-NS2B3_V5", "sequence-type": "addgene-full", "addgene_id": "115906", - "references": [], + "references": [ + "https://doi.org/10.3389/fcimb.2022.926036", + "https://www.ncbi.nlm.nih.gov/pubmed/36310878" + ], "kit": null, "att_sites": [ "attB1", @@ -136790,7 +144994,10 @@ "plasmid_name": "p3E-Dusp6DM_S159/197A", "sequence-type": "depositor-full", "addgene_id": "67684", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137919", + "https://www.ncbi.nlm.nih.gov/pubmed/27578780" + ], "kit": null, "file": "data/addgene_plasmids/67684.depositor-full.gb" }, @@ -136799,7 +145006,10 @@ "plasmid_name": "R701-X71-527: His6-tev-Hs.CALM1(1-80)", "sequence-type": "addgene-full", "addgene_id": "159694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bpj.2019.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30846362" + ], "kit": null, "att_sites": [ "attB1", @@ -136842,7 +145052,10 @@ "plasmid_name": "hsp70:EB3-mKate2", "sequence-type": "addgene-full", "addgene_id": "105965", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "att_sites": [ "attB1", @@ -136888,7 +145101,10 @@ "plasmid_name": "pHAGE-PIK3CA-C971R", "sequence-type": "addgene-full", "addgene_id": "116460", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -136942,7 +145158,10 @@ "plasmid_name": "pHAGE-Mch-MAP1LC3B", "sequence-type": "addgene-full", "addgene_id": "201924", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "att_sites": [ "attB1", @@ -136996,7 +145215,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-Membrane", "sequence-type": "depositor-full", "addgene_id": "168840", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -137025,7 +145247,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) SDC3", "sequence-type": "addgene-full", "addgene_id": "107501", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB1", @@ -137087,7 +145312,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP8", "sequence-type": "addgene-full", "addgene_id": "141262", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -137116,7 +145344,10 @@ "plasmid_name": "pDONR223-PRKAA2", "sequence-type": "addgene-full", "addgene_id": "23671", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -137148,7 +145379,10 @@ "plasmid_name": "pDONR221 NLRP1 A66V", "sequence-type": "addgene-full", "addgene_id": "166817", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -137181,7 +145415,10 @@ "plasmid_name": "pHAGE-PTK2__NCR3", "sequence-type": "addgene-full", "addgene_id": "116834", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -137233,7 +145470,10 @@ "plasmid_name": "pHAGE-PTEN", "sequence-type": "addgene-full", "addgene_id": "116780", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -137287,7 +145527,10 @@ "plasmid_name": "pDONR221_SLC26A2", "sequence-type": "addgene-full", "addgene_id": "132008", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -137318,7 +145561,10 @@ "plasmid_name": "pVL-FLAG/His LCOR", "sequence-type": "addgene-full", "addgene_id": "114450", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "att_sites": [ "attB1", @@ -137363,7 +145609,10 @@ "plasmid_name": "pDest-636", "sequence-type": "addgene-full", "addgene_id": "159574", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attR1", @@ -137407,7 +145656,10 @@ "plasmid_name": "pDONR223-MAP2K7", "sequence-type": "addgene-full", "addgene_id": "23798", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -137439,7 +145691,10 @@ "plasmid_name": "pCMB-ERr", "sequence-type": "depositor-full", "addgene_id": "61171", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -137484,7 +145739,10 @@ "plasmid_name": "pLBD16-GW", "sequence-type": "addgene-full", "addgene_id": "209377", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -137524,7 +145782,10 @@ "plasmid_name": "pDONR221_SLC3A1", "sequence-type": "addgene-full", "addgene_id": "132201", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -137556,7 +145817,10 @@ "plasmid_name": "pHAGE-PIK3R1-F398Lfs*6", "sequence-type": "addgene-full", "addgene_id": "116589", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -137607,7 +145871,10 @@ "plasmid_name": "plIVMD163", "sequence-type": "addgene-full", "addgene_id": "160935", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2002650117", + "https://www.ncbi.nlm.nih.gov/pubmed/33037152" + ], "kit": null, "att_sites": [ "attB1", @@ -137658,7 +145925,10 @@ "plasmid_name": "Flag-HA-USP33", "sequence-type": "addgene-full", "addgene_id": "22601", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -137707,7 +145977,10 @@ "plasmid_name": "pDONR223_CDC42_p.Q61L", "sequence-type": "addgene-full", "addgene_id": "82174", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -137737,7 +146010,6 @@ "plasmid_name": "R777-E053 Hs.EGFR", "sequence-type": "depositor-full", "addgene_id": "70337", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -137766,7 +146038,10 @@ "plasmid_name": "C232-E25: attB2r-mVenus-attB3", "sequence-type": "addgene-full", "addgene_id": "162905", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -137778,7 +146053,10 @@ "plasmid_name": "pDONR223_AKT1_WT", "sequence-type": "addgene-full", "addgene_id": "82294", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -137808,7 +146086,10 @@ "plasmid_name": "pmCellFree_KA2", "sequence-type": "addgene-full", "addgene_id": "145370", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attR1" @@ -137854,7 +146135,10 @@ "plasmid_name": "pDESTmycIGF2BP3", "sequence-type": "addgene-full", "addgene_id": "19879", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -137901,7 +146185,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PIP5K1B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170599", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -137967,7 +146250,10 @@ "plasmid_name": "pAG413GAL-ccdB", "sequence-type": "addgene-full", "addgene_id": "14141", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -138028,7 +146314,10 @@ "plasmid_name": "PB-TRE3G-SOX17", "sequence-type": "addgene-full", "addgene_id": "104541", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2017.12.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29320761" + ], "kit": null, "att_sites": [ "attB1", @@ -138072,7 +146361,10 @@ "plasmid_name": "pDONR223 GABARAP WT", "sequence-type": "addgene-full", "addgene_id": "123080", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -138101,7 +146393,10 @@ "plasmid_name": "pPB-cT3G-cERP2-TOX2", "sequence-type": "addgene-full", "addgene_id": "192920", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -138147,7 +146442,10 @@ "plasmid_name": "pHAGE-RET-L730I", "sequence-type": "addgene-full", "addgene_id": "116669", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -138196,7 +146494,10 @@ "plasmid_name": "pGWB412", "sequence-type": "depositor-full", "addgene_id": "74806", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -138246,7 +146547,6 @@ "plasmid_name": "His8:MBP-tev-Arg-e\u0394K-Flv", "sequence-type": "addgene-full", "addgene_id": "83396", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -138285,7 +146585,10 @@ "plasmid_name": "pMElmo2P1gfp", "sequence-type": "addgene-full", "addgene_id": "90127", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL1", @@ -138322,7 +146625,10 @@ "plasmid_name": "pHAGE-mKeima-LGALS3", "sequence-type": "addgene-full", "addgene_id": "175780", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -138373,7 +146679,10 @@ "plasmid_name": "pDONR221-SV2C_STOP", "sequence-type": "addgene-full", "addgene_id": "161463", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -138404,7 +146713,10 @@ "plasmid_name": "pMAL", "sequence-type": "addgene-full", "addgene_id": "161783", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2013.11.021", + "https://www.ncbi.nlm.nih.gov/pubmed/24388174" + ], "kit": null, "att_sites": [ "attR1", @@ -138470,7 +146782,10 @@ "plasmid_name": "pCFJ2308 - [1-2] ENTR - Fluor - mNeon(1 intron, syntrons(3), NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159852", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -138504,7 +146819,9 @@ "plasmid_name": "pMpGWB130", "sequence-type": "depositor-full", "addgene_id": "68584", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -138552,7 +146869,10 @@ "plasmid_name": "MAC_N_ELF4", "sequence-type": "addgene-full", "addgene_id": "167748", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -138597,7 +146917,10 @@ "plasmid_name": "pHAGE-PIK3CA-M1043V", "sequence-type": "addgene-full", "addgene_id": "116512", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -138652,7 +146975,10 @@ "plasmid_name": "pCG150", "sequence-type": "addgene-full", "addgene_id": "17247", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attR3", @@ -138688,7 +147014,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK11_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198005", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -138754,7 +147079,10 @@ "plasmid_name": "pEnt L1L3-MCS", "sequence-type": "depositor-full", "addgene_id": "26798", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "att_sites": [ "attL1", @@ -138779,7 +147107,10 @@ "plasmid_name": "MAC_C_PTH2", "sequence-type": "addgene-full", "addgene_id": "111674", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -138824,7 +147155,6 @@ "plasmid_name": "R777-E095 Hs.FNTB", "sequence-type": "depositor-full", "addgene_id": "70379", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -138836,7 +147166,10 @@ "plasmid_name": "pHAGE-CDKN2A", "sequence-type": "addgene-full", "addgene_id": "116726", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -138890,7 +147223,10 @@ "plasmid_name": "pMx/ATP11C-b-HA", "sequence-type": "addgene-full", "addgene_id": "209238", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258523", + "https://www.ncbi.nlm.nih.gov/pubmed/34528675" + ], "kit": null, "att_sites": [ "attB1", @@ -138926,7 +147262,10 @@ "plasmid_name": "pE1n", "sequence-type": "depositor-full", "addgene_id": "17441", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -138951,7 +147290,10 @@ "plasmid_name": "S2_AscI_HA-gateway_Bsu36I", "sequence-type": "addgene-full", "addgene_id": "128468", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "att_sites": [ "attR1", @@ -138991,7 +147333,6 @@ "plasmid_name": "IDG_CLIC3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161657", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -139050,7 +147391,10 @@ "plasmid_name": "pGWB506", "sequence-type": "depositor-full", "addgene_id": "74848", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -139101,7 +147445,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-HNRNPU", "sequence-type": "addgene-full", "addgene_id": "38068", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -139147,7 +147494,10 @@ "plasmid_name": "pAG303GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14350", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -139203,7 +147553,10 @@ "plasmid_name": "pLV-CMVtight-PLXNB2 iOE", "sequence-type": "addgene-full", "addgene_id": "176849", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -139264,7 +147617,10 @@ "plasmid_name": "dpYPQ230-D156R-ABE8", "sequence-type": "addgene-full", "addgene_id": "195569", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "att_sites": [ "attL1", @@ -139296,7 +147652,10 @@ "plasmid_name": "pDONR223_SPATA8_p.E18K", "sequence-type": "addgene-full", "addgene_id": "81272", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -139328,7 +147687,10 @@ "plasmid_name": "pMXs-ms-Sox17", "sequence-type": "depositor-full", "addgene_id": "50781", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "att_sites": [ "attB1", @@ -139356,7 +147718,10 @@ "plasmid_name": "ath5:GFP-CAAX", "sequence-type": "addgene-full", "addgene_id": "105958", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105958.addgene-full.gb" }, @@ -139365,7 +147730,10 @@ "plasmid_name": "PLEX_313 SLC31A1", "sequence-type": "addgene-full", "addgene_id": "184493", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abf0529", + "https://www.ncbi.nlm.nih.gov/pubmed/35298263" + ], "kit": null, "att_sites": [ "attB1", @@ -139423,7 +147791,6 @@ "plasmid_name": "pREP4xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79016", - "references": [], "kit": null, "file": "data/addgene_plasmids/79016.depositor-full.gb" }, @@ -139432,7 +147799,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag5_nostop", "sequence-type": "addgene-full", "addgene_id": "153177", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -139463,7 +147833,10 @@ "plasmid_name": "pCM5.63", "sequence-type": "depositor-full", "addgene_id": "19373", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19373.depositor-full.gb" }, @@ -139472,7 +147845,10 @@ "plasmid_name": "pCPP5571", "sequence-type": "addgene-full", "addgene_id": "128713", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -139503,7 +147879,10 @@ "plasmid_name": "pDONR221_SLC22A17", "sequence-type": "addgene-full", "addgene_id": "132035", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -139534,7 +147913,10 @@ "plasmid_name": "pCFJ914", "sequence-type": "depositor-full", "addgene_id": "44489", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attB1", @@ -139575,7 +147957,10 @@ "plasmid_name": "pENTR-actin", "sequence-type": "addgene-full", "addgene_id": "118378", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attL1", @@ -139606,7 +147991,6 @@ "plasmid_name": "pDONR221-zgc:152904", "sequence-type": "addgene-full", "addgene_id": "192740", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -139637,7 +148021,10 @@ "plasmid_name": "JDW 858 (pTol2-Kdrl-V5-mScarlet-KRAS4A-WT--AC-Cerulean)", "sequence-type": "addgene-full", "addgene_id": "180468", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -139684,7 +148071,10 @@ "plasmid_name": "R989-X29-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12V", "sequence-type": "addgene-full", "addgene_id": "159549", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -139731,7 +148121,6 @@ "plasmid_name": "Hs.HRAS G12V", "sequence-type": "depositor-full", "addgene_id": "83184", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -139757,7 +148146,10 @@ "plasmid_name": "A1-LCD-3R+3K", "sequence-type": "addgene-full", "addgene_id": "178669", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -139792,7 +148184,10 @@ "plasmid_name": "pDONR223_WNK3_p.V488A", "sequence-type": "addgene-full", "addgene_id": "81723", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -139824,7 +148219,10 @@ "plasmid_name": "pDONR221-SLC4A9_STOP", "sequence-type": "depositor-full", "addgene_id": "161382", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161382.depositor-full.gb" }, @@ -139833,7 +148231,10 @@ "plasmid_name": "TFORF3041", "sequence-type": "addgene-full", "addgene_id": "144517", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -139893,7 +148294,10 @@ "plasmid_name": "PB-Mycn", "sequence-type": "addgene-full", "addgene_id": "60667", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "att_sites": [ "attB1", @@ -139934,7 +148338,10 @@ "plasmid_name": "pHAGE-BRAF-T241P", "sequence-type": "addgene-full", "addgene_id": "116197", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -139989,7 +148396,10 @@ "plasmid_name": "CMV5.1-SARS-CoV-2 Nsp3", "sequence-type": "addgene-full", "addgene_id": "204205", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2023.105346", + "https://www.ncbi.nlm.nih.gov/pubmed/37838170" + ], "kit": null, "att_sites": [ "attB1", @@ -140045,7 +148455,10 @@ "plasmid_name": "TFORF3467", "sequence-type": "addgene-full", "addgene_id": "144943", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -140105,7 +148518,10 @@ "plasmid_name": "pECIA14", "sequence-type": "depositor-full", "addgene_id": "47051", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.06.006", + "https://www.ncbi.nlm.nih.gov/pubmed/23827685" + ], "kit": null, "att_sites": [ "attR1", @@ -140152,7 +148568,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 NSP2_nostop", "sequence-type": "addgene-full", "addgene_id": "168571", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -140181,7 +148600,10 @@ "plasmid_name": "pAG414GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14264", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -140240,7 +148662,10 @@ "plasmid_name": "pDE43-MCKq20", "sequence-type": "depositor-full", "addgene_id": "27334", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "att_sites": [ "attR3", @@ -140274,7 +148699,10 @@ "plasmid_name": "pDONR221-SLC31A1_STOP", "sequence-type": "depositor-full", "addgene_id": "161418", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -140305,7 +148733,10 @@ "plasmid_name": "pDONR221-eGFP_mito", "sequence-type": "addgene-full", "addgene_id": "221414", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -140341,7 +148772,9 @@ "plasmid_name": "pMpGWB212", "sequence-type": "depositor-full", "addgene_id": "68603", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -140388,7 +148821,10 @@ "plasmid_name": "AKT-APEX2-P2A-mKate2", "sequence-type": "depositor-full", "addgene_id": "67654", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -140432,7 +148868,10 @@ "plasmid_name": "pDONR223_PIK3R3_p.R383C", "sequence-type": "addgene-full", "addgene_id": "81458", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -140464,7 +148903,10 @@ "plasmid_name": "JT504: pMVP/SB/eGFP-DEST", "sequence-type": "addgene-full", "addgene_id": "121861", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -140507,7 +148949,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDKL2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158181", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -140573,7 +149014,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir193b-wt", "sequence-type": "depositor-full", "addgene_id": "46734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -140623,7 +149067,10 @@ "plasmid_name": "pDONR221_SLC16A3", "sequence-type": "addgene-full", "addgene_id": "131899", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -140654,7 +149101,10 @@ "plasmid_name": "SITS-mCherry-ccdb", "sequence-type": "addgene-full", "addgene_id": "118629", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -140708,7 +149158,10 @@ "plasmid_name": "p3E-rab38a-CA", "sequence-type": "addgene-full", "addgene_id": "109748", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -140739,7 +149192,10 @@ "plasmid_name": "pLX302-JSP1-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87773", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "file": "data/addgene_plasmids/87773.addgene-full.gb" }, @@ -140748,7 +149204,10 @@ "plasmid_name": "MiniCoopR mitfa:KIT K642E", "sequence-type": "addgene-full", "addgene_id": "118849", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -140787,8 +149246,8 @@ "sequence-type": "depositor-full", "addgene_id": "19889", "references": [ - "https://doi.org/10.1038/nmeth.2889", - "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" ], "kit": null, "att_sites": [ @@ -140834,7 +149293,10 @@ "plasmid_name": "pDONR223_IDH2_p.S249G", "sequence-type": "addgene-full", "addgene_id": "82871", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -140863,7 +149325,6 @@ "plasmid_name": "R777-E315 Hs.SHOC2", "sequence-type": "depositor-full", "addgene_id": "70599", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -140891,7 +149352,10 @@ "plasmid_name": "pDONR221-SLC38A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161249", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -140923,7 +149387,6 @@ "plasmid_name": "pDEST26-MSRA-C-HA", "sequence-type": "addgene-full", "addgene_id": "195177", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -140970,7 +149433,6 @@ "plasmid_name": "pCWXPGR-pTF-Ngn3", "sequence-type": "addgene-full", "addgene_id": "114308", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -141030,7 +149492,10 @@ "plasmid_name": "TFORF2982", "sequence-type": "addgene-full", "addgene_id": "144458", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -141090,7 +149555,10 @@ "plasmid_name": "DHX37", "sequence-type": "addgene-full", "addgene_id": "155539", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -141133,7 +149601,10 @@ "plasmid_name": "DV-GFP-Rab38-WT-pDEST53", "sequence-type": "addgene-full", "addgene_id": "15669", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.072087599", + "https://www.ncbi.nlm.nih.gov/pubmed/11917121" + ], "kit": null, "att_sites": [ "attB1", @@ -141185,7 +149656,6 @@ "plasmid_name": "pCW57.1_V5_FLAG_Ct", "sequence-type": "addgene-full", "addgene_id": "194075", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -141242,7 +149712,9 @@ "plasmid_name": "pME-nlsGFP-P2A", "sequence-type": "depositor-full", "addgene_id": "80808", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL1", @@ -141280,7 +149752,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND E274R + S297A", "sequence-type": "addgene-full", "addgene_id": "169968", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -141311,7 +149786,10 @@ "plasmid_name": "pDONR223 ATG3 K243R", "sequence-type": "addgene-full", "addgene_id": "129294", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attL1", @@ -141340,7 +149818,10 @@ "plasmid_name": "pDONR223_EYS_p.H466N", "sequence-type": "addgene-full", "addgene_id": "81517", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -141372,7 +149853,6 @@ "plasmid_name": "pCM1.59", "sequence-type": "depositor-full", "addgene_id": "19593", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -141403,7 +149883,10 @@ "plasmid_name": "pGP8A-ccdB", "sequence-type": "depositor-full", "addgene_id": "83883", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1324147111", + "https://www.ncbi.nlm.nih.gov/pubmed/24979769" + ], "kit": null, "att_sites": [ "attR1", @@ -141448,7 +149931,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS1C", "sequence-type": "depositor-full", "addgene_id": "20240", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "att_sites": [ "attB1", @@ -141481,7 +149967,10 @@ "plasmid_name": "TFORF3421", "sequence-type": "addgene-full", "addgene_id": "144897", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -141542,7 +150031,10 @@ "plasmid_name": "actc1b-mKate2-rab1ba", "sequence-type": "addgene-full", "addgene_id": "109607", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -141584,7 +150076,10 @@ "plasmid_name": "TFORF3247", "sequence-type": "addgene-full", "addgene_id": "144723", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -141644,7 +150139,10 @@ "plasmid_name": "pLX304-GW-DCK*-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176291", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "att_sites": [ "attR1", @@ -141715,7 +150213,9 @@ "plasmid_name": "pPB-cT3G-cERP2-3xFLAG-SMAD9-active", "sequence-type": "addgene-full", "addgene_id": "222580", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222580.addgene-full.gb" }, @@ -141724,7 +150224,10 @@ "plasmid_name": "pSLIK_hygro_BirA_NRF2", "sequence-type": "addgene-full", "addgene_id": "136539", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attB1", @@ -141790,7 +150293,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp9", "sequence-type": "addgene-full", "addgene_id": "168918", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -141819,7 +150325,10 @@ "plasmid_name": "pAFMW-Gwpep(Mm)-Nbr[C399-625]", "sequence-type": "addgene-full", "addgene_id": "188591", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -141849,7 +150358,10 @@ "plasmid_name": "pSAM2_mCherry_Irx4", "sequence-type": "addgene-full", "addgene_id": "72692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -141911,7 +150423,9 @@ "plasmid_name": "pDONR221-MAVS(v2)", "sequence-type": "addgene-full", "addgene_id": "166189", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -141942,7 +150456,10 @@ "plasmid_name": "pMuLE ENTR SV40 PuroR L3-L2", "sequence-type": "depositor-full", "addgene_id": "62164", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -141979,7 +150496,6 @@ "plasmid_name": "R777-E149 Hs.PAK2", "sequence-type": "depositor-full", "addgene_id": "70433", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -142007,7 +150523,10 @@ "plasmid_name": "LC901: pMVP (L3-L2) mCherry + WPRE", "sequence-type": "addgene-full", "addgene_id": "121773", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -142044,7 +150563,10 @@ "plasmid_name": "pENTR-Sensor_P2A_SLC2A4", "sequence-type": "addgene-full", "addgene_id": "221429", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -142077,7 +150599,10 @@ "plasmid_name": "pAG306GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14380", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -142135,7 +150660,10 @@ "plasmid_name": "pDONR221-SLC15A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161040", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -142166,7 +150694,10 @@ "plasmid_name": "pDONR223_RBM34_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82998", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -142195,7 +150726,10 @@ "plasmid_name": "pEarleyGate 100RMOA mPing", "sequence-type": "addgene-full", "addgene_id": "196137", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000793", + "https://www.ncbi.nlm.nih.gov/pubmed/37273575" + ], "kit": null, "file": "data/addgene_plasmids/196137.addgene-full.gb" }, @@ -142204,7 +150738,10 @@ "plasmid_name": "pDONR223_GATA3_p.S118F", "sequence-type": "addgene-full", "addgene_id": "81465", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -142236,7 +150773,10 @@ "plasmid_name": "TFORF3175", "sequence-type": "addgene-full", "addgene_id": "144651", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -142296,7 +150836,10 @@ "plasmid_name": "pHAGE-BRAF-A598_T599insP", "sequence-type": "addgene-full", "addgene_id": "116131", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116131.addgene-full.gb" }, @@ -142305,7 +150848,10 @@ "plasmid_name": "pMOS018E: Entry vector for: ratiometric pHluorin (mitchondrial)", "sequence-type": "addgene-full", "addgene_id": "163070", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -142333,7 +150879,10 @@ "plasmid_name": "pDEST17-UbE2A", "sequence-type": "addgene-full", "addgene_id": "15780", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "file": "data/addgene_plasmids/15780.addgene-full.gb" }, @@ -142342,7 +150891,10 @@ "plasmid_name": "pUBQ10:LLFLS2-2", "sequence-type": "addgene-full", "addgene_id": "202188", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "att_sites": [ "attB1", @@ -142388,7 +150940,10 @@ "plasmid_name": "pDONR223_REG1A_WT", "sequence-type": "addgene-full", "addgene_id": "81785", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -142400,7 +150955,6 @@ "plasmid_name": "Hs.KRAS4b K147L", "sequence-type": "depositor-full", "addgene_id": "83154", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -142426,7 +150980,10 @@ "plasmid_name": "pFL-EGFP-3xFlag-HLTF", "sequence-type": "addgene-full", "addgene_id": "193055", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111749", + "https://www.ncbi.nlm.nih.gov/pubmed/36476850" + ], "kit": null, "att_sites": [ "attB1", @@ -142470,7 +151027,10 @@ "plasmid_name": "pAWH", "sequence-type": "addgene-full", "addgene_id": "133894", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attR1", @@ -142519,7 +151079,10 @@ "plasmid_name": "pDONR223_ZDHHC4_WT", "sequence-type": "addgene-full", "addgene_id": "81831", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -142551,7 +151114,10 @@ "plasmid_name": "pDONR221_SLC25A39", "sequence-type": "addgene-full", "addgene_id": "131970", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -142582,7 +151148,10 @@ "plasmid_name": "TFORF3309", "sequence-type": "addgene-full", "addgene_id": "144785", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -142642,7 +151211,10 @@ "plasmid_name": "TFORF3355", "sequence-type": "addgene-full", "addgene_id": "144831", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -142702,7 +151274,10 @@ "plasmid_name": "pHAGE-EGFR-S768T", "sequence-type": "addgene-full", "addgene_id": "116305", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -142756,7 +151331,10 @@ "plasmid_name": "pDONR221-SLC25A29_STOP", "sequence-type": "addgene-full", "addgene_id": "161194", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -142787,7 +151365,6 @@ "plasmid_name": "pSCM167-Flag-hSFRP1(aa53-169)", "sequence-type": "addgene-full", "addgene_id": "189547", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -142839,7 +151416,9 @@ "plasmid_name": "pUB-cSypHer", "sequence-type": "addgene-full", "addgene_id": "84733", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "att_sites": [ "attB1", @@ -142877,7 +151456,10 @@ "plasmid_name": "pEBTet-SNAP-FOP", "sequence-type": "addgene-full", "addgene_id": "136796", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -142925,7 +151507,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep70", "sequence-type": "addgene-full", "addgene_id": "136822", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -142970,7 +151555,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12D", "sequence-type": "addgene-full", "addgene_id": "81651", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -143004,7 +151592,6 @@ "plasmid_name": "p667-UBC-CLK4-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189913", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -143069,7 +151656,10 @@ "plasmid_name": "pDONR221-SLC35G5_STOP", "sequence-type": "addgene-full", "addgene_id": "161274", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -143100,7 +151690,10 @@ "plasmid_name": "Ad-MKP-3 153-381", "sequence-type": "addgene-full", "addgene_id": "131524", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "att_sites": [ "attB1", @@ -143136,7 +151729,10 @@ "plasmid_name": "pHAGE- TRE-DEST-CBioTAP", "sequence-type": "depositor-full", "addgene_id": "53569", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1400648111", + "https://www.ncbi.nlm.nih.gov/pubmed/24550272" + ], "kit": null, "att_sites": [ "attR1", @@ -143193,7 +151789,10 @@ "plasmid_name": "pME-myristo", "sequence-type": "addgene-full", "addgene_id": "109541", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -143225,7 +151824,10 @@ "plasmid_name": "pENT-L1-Kozak-Venus-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186360", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL1", @@ -143260,7 +151862,10 @@ "plasmid_name": "pGWT35S-Cerulean-SKL", "sequence-type": "addgene-full", "addgene_id": "194048", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "att_sites": [ "attB1", @@ -143306,7 +151911,10 @@ "plasmid_name": "MAC_N_COMMD8", "sequence-type": "addgene-full", "addgene_id": "209680", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -143351,7 +151959,6 @@ "plasmid_name": "V5-K202R-long-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192083", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -143402,7 +152009,10 @@ "plasmid_name": "pENTR4-myc-nuc (w556-1)", "sequence-type": "addgene-full", "addgene_id": "20026", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -143428,7 +152038,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP7", "sequence-type": "addgene-full", "addgene_id": "154406", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -143458,7 +152071,6 @@ "plasmid_name": "pUNos_C1", "sequence-type": "addgene-full", "addgene_id": "33297", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -143499,7 +152111,9 @@ "plasmid_name": "pKC-4.04", "sequence-type": "addgene-full", "addgene_id": "112085", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29528287" + ], "kit": null, "att_sites": [ "attB1", @@ -143551,7 +152165,10 @@ "plasmid_name": "pDONR223_STK11_p.G242W", "sequence-type": "addgene-full", "addgene_id": "82763", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -143580,7 +152197,10 @@ "plasmid_name": "pGP8GF-ccdB", "sequence-type": "addgene-full", "addgene_id": "188445", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attR2" @@ -143628,7 +152248,10 @@ "plasmid_name": "pLX304_zeo_eGFP_V5", "sequence-type": "addgene-full", "addgene_id": "160096", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -143691,7 +152314,10 @@ "plasmid_name": "pAG303GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14133", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -143748,7 +152374,10 @@ "plasmid_name": "pDONR P2R-P3-EYFP", "sequence-type": "depositor-full", "addgene_id": "48351", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -143786,7 +152415,10 @@ "plasmid_name": "pSelAct-Express", "sequence-type": "addgene-full", "addgene_id": "174375", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-07-21-0171-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/34890250" + ], "kit": null, "att_sites": [ "attR1", @@ -143834,7 +152466,10 @@ "plasmid_name": "pJAK1.A", "sequence-type": "depositor-full", "addgene_id": "29460", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2009.07.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19647016" + ], "kit": null, "att_sites": [ "attR1", @@ -143861,7 +152496,10 @@ "plasmid_name": "pHAGE-MAP2K1-K57N", "sequence-type": "addgene-full", "addgene_id": "116427", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -143916,7 +152554,6 @@ "plasmid_name": "pAG426GAL-LV_3CL", "sequence-type": "addgene-full", "addgene_id": "203507", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -143970,7 +152607,10 @@ "plasmid_name": "pDONR223_TRAT1_p.D40Y", "sequence-type": "addgene-full", "addgene_id": "81293", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -144002,7 +152642,6 @@ "plasmid_name": "p416 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58543", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -144054,7 +152693,10 @@ "plasmid_name": "pDL15", "sequence-type": "addgene-full", "addgene_id": "175901", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -144085,7 +152727,10 @@ "plasmid_name": "MAC_N_TBA1A", "sequence-type": "addgene-full", "addgene_id": "111695", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -144130,7 +152775,6 @@ "plasmid_name": "pENTR-Hu_TTK1(WT)", "sequence-type": "addgene-full", "addgene_id": "136354", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -144161,7 +152805,10 @@ "plasmid_name": "W118-1_hTGM2_C277S-Flag", "sequence-type": "addgene-full", "addgene_id": "180412", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "att_sites": [ "attB1", @@ -144224,7 +152871,10 @@ "plasmid_name": "pTol2pA2-mnx1:MLS-KillerRed", "sequence-type": "addgene-full", "addgene_id": "115515", - "references": [], + "references": [ + "https://doi.org/10.1016/j.redox.2018.08.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30193184" + ], "kit": null, "att_sites": [ "attB1", @@ -144262,7 +152912,10 @@ "plasmid_name": "pUAS-PE2-attB", "sequence-type": "addgene-full", "addgene_id": "149550", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2021996118", + "https://www.ncbi.nlm.nih.gov/pubmed/33443210" + ], "kit": null, "att_sites": [ "attB1", @@ -144315,7 +152968,10 @@ "plasmid_name": "pLentiCMV Puro DEST ERKKTRClover", "sequence-type": "addgene-full", "addgene_id": "59150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attB1", @@ -144379,7 +153035,10 @@ "plasmid_name": "pDONR221 Spinophilin", "sequence-type": "addgene-full", "addgene_id": "87123", - "references": [], + "references": [ + "https://doi.org/10.1155/2017/4153076", + "https://www.ncbi.nlm.nih.gov/pubmed/28634551" + ], "kit": null, "att_sites": [ "attL1", @@ -144410,7 +153069,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK13_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135266", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -144476,7 +153134,10 @@ "plasmid_name": "CanlonicSF", "sequence-type": "addgene-full", "addgene_id": "178342", - "references": [], + "references": [ + "https://doi.org/10.1021/acssensors.2c00731", + "https://www.ncbi.nlm.nih.gov/pubmed/36306435" + ], "kit": null, "att_sites": [ "attB1", @@ -144529,7 +153190,10 @@ "plasmid_name": "pDEST-HemmarR2", "sequence-type": "addgene-full", "addgene_id": "112813", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301736", + "https://www.ncbi.nlm.nih.gov/pubmed/30504366" + ], "kit": null, "att_sites": [ "attR1", @@ -144565,7 +153229,10 @@ "plasmid_name": "pCAG/ATP8B2(E171Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209242", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209242.addgene-full.gb" }, @@ -144574,7 +153241,10 @@ "plasmid_name": "pSC20", "sequence-type": "addgene-full", "addgene_id": "104794", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104794.addgene-full.gb" }, @@ -144583,7 +153253,10 @@ "plasmid_name": "pAG425GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14202", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -144645,7 +153318,10 @@ "plasmid_name": "pDONR223_RB1_WT", "sequence-type": "addgene-full", "addgene_id": "82275", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -144674,7 +153350,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDKL5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170578", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -144740,7 +153415,10 @@ "plasmid_name": "pDONR221-SLC25A17_STOP", "sequence-type": "depositor-full", "addgene_id": "161157", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -144771,7 +153449,10 @@ "plasmid_name": "pDONR221-OCA2_STOP", "sequence-type": "addgene-full", "addgene_id": "161419", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -144802,7 +153483,10 @@ "plasmid_name": "pDONR221_SLC34A1", "sequence-type": "addgene-full", "addgene_id": "132100", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -144833,7 +153517,10 @@ "plasmid_name": "CHMP2A_GFP_N_term", "sequence-type": "addgene-full", "addgene_id": "31805", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1201847", + "https://www.ncbi.nlm.nih.gov/pubmed/21310966" + ], "kit": null, "att_sites": [ "attB1", @@ -144874,7 +153561,10 @@ "plasmid_name": "pHAGE-STK19-D89N", "sequence-type": "addgene-full", "addgene_id": "116688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -144929,7 +153619,10 @@ "plasmid_name": "pDestTol2pA ins:R198P mVenus", "sequence-type": "addgene-full", "addgene_id": "210519", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adi8317", + "https://www.ncbi.nlm.nih.gov/pubmed/37792934" + ], "kit": null, "file": "data/addgene_plasmids/210519.addgene-full.gb" }, @@ -144938,7 +153631,6 @@ "plasmid_name": "pAG426-GAL-Alpha-synuclein-H50Q", "sequence-type": "addgene-full", "addgene_id": "181724", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -144992,7 +153684,10 @@ "plasmid_name": "tetO-NR2F1", "sequence-type": "addgene-full", "addgene_id": "170698", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -145054,7 +153749,10 @@ "plasmid_name": "pAG414GPD-CsCYP722C(pYL877)", "sequence-type": "addgene-full", "addgene_id": "178296", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -145106,7 +153804,10 @@ "plasmid_name": "pDONR223_BMPR1B_WT", "sequence-type": "addgene-full", "addgene_id": "82195", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -145135,7 +153836,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PRKACG_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170603", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -145201,7 +153901,10 @@ "plasmid_name": "pDONR223_GPR141_p.E267K", "sequence-type": "addgene-full", "addgene_id": "81347", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -145213,7 +153916,10 @@ "plasmid_name": "pCR8/GW/TOPO-ELK1Y158A", "sequence-type": "addgene-full", "addgene_id": "98628", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -145242,7 +153948,10 @@ "plasmid_name": "pUC-DTA-DEST-R3R4(R)", "sequence-type": "addgene-full", "addgene_id": "141011", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR3", @@ -145288,7 +153997,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-LATS2", "sequence-type": "addgene-full", "addgene_id": "172987", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -145333,7 +154045,10 @@ "plasmid_name": "pHAGE-PTCH1-R1308Kfs*64", "sequence-type": "addgene-full", "addgene_id": "116613", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -145387,7 +154102,10 @@ "plasmid_name": "pcDNA5FRT/TO-SVIP-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113491", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1" @@ -145429,7 +154147,6 @@ "plasmid_name": "pcDNA-DDX53-GFP", "sequence-type": "addgene-full", "addgene_id": "222239", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -145481,7 +154198,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-TAX1BP1", "sequence-type": "addgene-full", "addgene_id": "175761", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -145532,7 +154252,10 @@ "plasmid_name": "pENTR223-BBRF3", "sequence-type": "addgene-full", "addgene_id": "195808", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -145561,7 +154284,10 @@ "plasmid_name": "p5E-QUAS (L4-R1)", "sequence-type": "depositor-full", "addgene_id": "61374", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2013.06.012", + "https://www.ncbi.nlm.nih.gov/pubmed/23792917" + ], "kit": null, "file": "data/addgene_plasmids/61374.depositor-full.gb" }, @@ -145570,7 +154296,10 @@ "plasmid_name": "pDONR221-HOXB9", "sequence-type": "depositor-full", "addgene_id": "101398", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attB2", @@ -145603,7 +154332,10 @@ "plasmid_name": "pcDNA5-FRT/TO-N-mEGFP-PARP7", "sequence-type": "addgene-full", "addgene_id": "178004", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "att_sites": [ "attB1", @@ -145650,7 +154382,6 @@ "plasmid_name": "Hs.KRAS4b G12V", "sequence-type": "depositor-full", "addgene_id": "83132", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -145679,7 +154410,10 @@ "plasmid_name": "pDONR223_MET_WT", "sequence-type": "addgene-full", "addgene_id": "82307", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -145708,7 +154442,10 @@ "plasmid_name": "C122-E16: CyPet", "sequence-type": "addgene-full", "addgene_id": "162896", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -145742,7 +154479,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-GABARAPL2-GFP", "sequence-type": "addgene-full", "addgene_id": "123113", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -145794,7 +154534,10 @@ "plasmid_name": "pDONR221_SLC36A2", "sequence-type": "addgene-full", "addgene_id": "132072", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -145825,7 +154568,10 @@ "plasmid_name": "pHAGE-MEOX2", "sequence-type": "addgene-full", "addgene_id": "116761", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -145880,7 +154626,10 @@ "plasmid_name": "pDONR223-ZNF331", "sequence-type": "addgene-full", "addgene_id": "88442", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -145909,7 +154658,10 @@ "plasmid_name": "pCMU-TPr", "sequence-type": "depositor-full", "addgene_id": "61189", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -145955,7 +154707,10 @@ "plasmid_name": "pMuLE ENTR H1 L5-L4", "sequence-type": "depositor-full", "addgene_id": "62102", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL4", @@ -145988,7 +154743,9 @@ "plasmid_name": "pRRLHygro-pEF1a-p53ash-mKate2-splitmVenusC", "sequence-type": "depositor-full", "addgene_id": "69583", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "att_sites": [ "attB1", @@ -146049,7 +154806,10 @@ "plasmid_name": "pENTR-GFP-WT1 -KTS C terminal HA", "sequence-type": "addgene-full", "addgene_id": "217642", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "att_sites": [ "attB2", @@ -146084,7 +154844,6 @@ "plasmid_name": "R777-E171 Hs.PIK3R1", "sequence-type": "depositor-full", "addgene_id": "70455", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -146112,7 +154871,10 @@ "plasmid_name": "p3Eegfp", "sequence-type": "depositor-full", "addgene_id": "22462", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attL3", @@ -146148,7 +154910,10 @@ "plasmid_name": "pHAGE-PIK3CA-E542V", "sequence-type": "addgene-full", "addgene_id": "116481", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -146199,7 +154964,10 @@ "plasmid_name": "pDONR221_SLC13A3", "sequence-type": "addgene-full", "addgene_id": "132309", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -146230,7 +154998,10 @@ "plasmid_name": "pBullet-er-c", "sequence-type": "depositor-full", "addgene_id": "53068", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53068.depositor-full.gb" }, @@ -146239,7 +155010,10 @@ "plasmid_name": "pDONR221-UCP3_STOP", "sequence-type": "addgene-full", "addgene_id": "161424", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -146270,7 +155044,10 @@ "plasmid_name": "pDONR223_IKBKE_WT", "sequence-type": "addgene-full", "addgene_id": "82248", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -146299,7 +155076,10 @@ "plasmid_name": "pT2-cryR;dll4P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90160", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90160.addgene-full.gb" }, @@ -146308,7 +155088,10 @@ "plasmid_name": "pCZGY3195", "sequence-type": "addgene-full", "addgene_id": "172695", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26376", + "https://www.ncbi.nlm.nih.gov/pubmed/28767038" + ], "kit": null, "att_sites": [ "attB1", @@ -146341,7 +155124,10 @@ "plasmid_name": "pMXs-ms-Sox3", "sequence-type": "depositor-full", "addgene_id": "50779", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "att_sites": [ "attB1", @@ -146369,7 +155155,10 @@ "plasmid_name": "pJW4.12", "sequence-type": "addgene-full", "addgene_id": "131374", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -146413,7 +155202,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS-Gln93,Ala271 hygro", "sequence-type": "addgene-full", "addgene_id": "158638", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attB1", @@ -146479,7 +155271,10 @@ "plasmid_name": "pHAGE-PIK3CB-E554K", "sequence-type": "addgene-full", "addgene_id": "116555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -146534,7 +155329,10 @@ "plasmid_name": "pDONR223-PIP5K2A", "sequence-type": "addgene-full", "addgene_id": "23744", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -146566,7 +155364,10 @@ "plasmid_name": "Tol2-LyzC-Utrophin-GFP-U6ac-ctrl guides", "sequence-type": "addgene-full", "addgene_id": "168253", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "att_sites": [ "attB1", @@ -146609,7 +155410,10 @@ "plasmid_name": "pMuLE Lenti Dest eGFP", "sequence-type": "addgene-full", "addgene_id": "62175", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR1", @@ -146674,7 +155478,10 @@ "plasmid_name": "pBABEpuro-ERBB2 A775_G776insYVMA", "sequence-type": "addgene-full", "addgene_id": "40982", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1203201109", + "https://www.ncbi.nlm.nih.gov/pubmed/22908275" + ], "kit": null, "att_sites": [ "attB1", @@ -146706,7 +155513,6 @@ "plasmid_name": "pAG416-GAL-TDP-43-Q331K", "sequence-type": "addgene-full", "addgene_id": "181719", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -146759,7 +155565,10 @@ "plasmid_name": "pMDJ23 - pEXP[Psmu-2 | eFlp recombinase (PATCs) | gpd-2 tagRFP-T smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159815", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -146792,7 +155601,6 @@ "plasmid_name": "pAG416GAL10-WNV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203475", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -146841,7 +155649,10 @@ "plasmid_name": "MAC_N_IRF3", "sequence-type": "addgene-full", "addgene_id": "187749", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -146885,7 +155696,10 @@ "plasmid_name": "MAC_N_SOX2", "sequence-type": "addgene-full", "addgene_id": "167794", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -146930,7 +155744,10 @@ "plasmid_name": "pDONR223_IDH1_WT", "sequence-type": "addgene-full", "addgene_id": "82133", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -146959,7 +155776,10 @@ "plasmid_name": "pENTR-2B-Gata4", "sequence-type": "addgene-full", "addgene_id": "98615", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -146983,7 +155803,10 @@ "plasmid_name": "pGM48DEST", "sequence-type": "depositor-full", "addgene_id": "74757", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301705", + "https://www.ncbi.nlm.nih.gov/pubmed/30504365" + ], "kit": null, "att_sites": [ "attR1", @@ -147021,7 +155844,6 @@ "plasmid_name": "R777-E097 Hs.FOS", "sequence-type": "depositor-full", "addgene_id": "70381", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -147049,7 +155871,6 @@ "plasmid_name": "g7t pDONR", "sequence-type": "addgene-full", "addgene_id": "117457", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -147080,7 +155901,10 @@ "plasmid_name": "CRYZL1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176941", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -147132,7 +155956,10 @@ "plasmid_name": "371 pTol2-fli1ep:MTDest", "sequence-type": "depositor-full", "addgene_id": "73490", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -147180,7 +156007,10 @@ "plasmid_name": "pAM-PAT-ProUBQ10 GW", "sequence-type": "addgene-full", "addgene_id": "79751", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms12202", + "https://www.ncbi.nlm.nih.gov/pubmed/27447739" + ], "kit": null, "att_sites": [ "attR1", @@ -147212,7 +156042,10 @@ "plasmid_name": "pDONR221_SLC9A4", "sequence-type": "addgene-full", "addgene_id": "132246", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -147243,7 +156076,9 @@ "plasmid_name": "pDRFLIP32", "sequence-type": "depositor-full", "addgene_id": "65511", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -147295,7 +156130,10 @@ "plasmid_name": "pSGE_889_Nhe2_EcR-to-Ets96B_RB", "sequence-type": "depositor-full", "addgene_id": "71183", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -147328,7 +156166,10 @@ "plasmid_name": "pLCS109", "sequence-type": "addgene-full", "addgene_id": "209330", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -147368,7 +156209,6 @@ "plasmid_name": "DDX3X - G123E in pENTR", "sequence-type": "addgene-full", "addgene_id": "216574", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -147397,7 +156237,10 @@ "plasmid_name": "pENTR-HLA-A0201-His", "sequence-type": "addgene-full", "addgene_id": "108213", - "references": [], + "references": [ + "https://doi.org/10.4049/immunohorizons.1800029", + "https://www.ncbi.nlm.nih.gov/pubmed/31022685" + ], "kit": null, "att_sites": [ "attL1", @@ -147429,7 +156272,10 @@ "plasmid_name": "pENTR223-BALF4", "sequence-type": "addgene-full", "addgene_id": "195835", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -147458,7 +156304,10 @@ "plasmid_name": "pENTR223-BKRF4", "sequence-type": "addgene-full", "addgene_id": "195781", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -147487,7 +156336,10 @@ "plasmid_name": "C512-E11: attB5r-mTFP1-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162942", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -147516,7 +156368,10 @@ "plasmid_name": "pDONR221-SLC39A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161295", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -147547,7 +156402,10 @@ "plasmid_name": "pDONR223_BTC_WT", "sequence-type": "addgene-full", "addgene_id": "81904", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -147579,7 +156437,10 @@ "plasmid_name": "APOE_pLX307", "sequence-type": "depositor-full", "addgene_id": "98317", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -147639,7 +156500,10 @@ "plasmid_name": "MAC-SARS-CoV-2 M", "sequence-type": "addgene-full", "addgene_id": "158369", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -147684,7 +156548,10 @@ "plasmid_name": "pENTR puroR R4-R3", "sequence-type": "depositor-full", "addgene_id": "43965", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "att_sites": [ "attR3", @@ -147718,7 +156585,10 @@ "plasmid_name": "pDONR221 Cas9-HMGB1", "sequence-type": "addgene-full", "addgene_id": "183198", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "att_sites": [ "attL1", @@ -147752,7 +156622,10 @@ "plasmid_name": "TFORF3288", "sequence-type": "addgene-full", "addgene_id": "144764", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144764.addgene-full.gb" }, @@ -147761,126 +156634,138 @@ "plasmid_name": "375 pME-fli1a", "sequence-type": "depositor-full", "addgene_id": "49001", - "references": [], - "kit": null, - "att_sites": [ - "attL1", - "attL2" - ], - "features": [ - "Kan-R", - "KanR", - "L4440", - "M13 Forward", - "M13 Reverse", - "M13 fwd", - "M13 rev", - "M13/pUC Forward", - "T7", - "T7 promoter", - "attL1", - "attL2", - "ori", - "pBR322ori-F", - "pENTR-R", - "rrnB T1 terminator", - "rrnB T2 terminator" - ] - }, - { - "source": "addgene", - "plasmid_name": "actc1b-mKate2-rab40b", - "sequence-type": "addgene-full", - "addgene_id": "109640", - "references": [], - "kit": null, - "att_sites": [ - "attB1", - "attB2", - "attB3", - "attB4" - ], - "features": [ - "Amp-R", - "AmpR", - "AmpR promoter", - "CAP binding site", - "EBV-rev", - "F1ori-F", - "Kozak sequence", - "L4440", - "M13 fwd", - "M13 rev", - "M13/pUC Reverse", - "SK primer", - "SV40 poly(A) signal", - "SV40pA-R", - "T3", - "T3 promoter", - "attB1", - "attB2", - "attB3", - "attB4", - "lac operator", - "lac promoter", - "mKate2", - "ori", - "pBR322ori-F", - "pBluescriptSK" - ] - }, - { - "source": "addgene", - "plasmid_name": "pT3-EF1aH-PIK3CA H1047R", - "sequence-type": "addgene-full", - "addgene_id": "180031", - "references": [], - "kit": null, - "att_sites": [ - "attB1", - "attB2" + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], + "kit": null, + "att_sites": [ + "attL1", + "attL2" + ], + "features": [ + "Kan-R", + "KanR", + "L4440", + "M13 Forward", + "M13 Reverse", + "M13 fwd", + "M13 rev", + "M13/pUC Forward", + "T7", + "T7 promoter", + "attL1", + "attL2", + "ori", + "pBR322ori-F", + "pENTR-R", + "rrnB T1 terminator", + "rrnB T2 terminator" + ] + }, + { + "source": "addgene", + "plasmid_name": "actc1b-mKate2-rab40b", + "sequence-type": "addgene-full", + "addgene_id": "109640", + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], + "kit": null, + "att_sites": [ + "attB1", + "attB2", + "attB3", + "attB4" + ], + "features": [ + "Amp-R", + "AmpR", + "AmpR promoter", + "CAP binding site", + "EBV-rev", + "F1ori-F", + "Kozak sequence", + "L4440", + "M13 fwd", + "M13 rev", + "M13/pUC Reverse", + "SK primer", + "SV40 poly(A) signal", + "SV40pA-R", + "T3", + "T3 promoter", + "attB1", + "attB2", + "attB3", + "attB4", + "lac operator", + "lac promoter", + "mKate2", + "ori", + "pBR322ori-F", + "pBluescriptSK" + ] + }, + { + "source": "addgene", + "plasmid_name": "pT3-EF1aH-PIK3CA H1047R", + "sequence-type": "addgene-full", + "addgene_id": "180031", + "references": [ + "https://doi.org/10.1111/liv.13055", + "https://www.ncbi.nlm.nih.gov/pubmed/26716908" + ], + "kit": null, + "att_sites": [ + "attB1", + "attB2" + ], + "features": [ + "Amp-R", + "AmpR", + "AmpR promoter", + "BGH-rev", + "CAP binding site", + "EBV-rev", + "EF-1-alpha intron A", + "EF-1-alpha promoter", + "EF1a-F", + "HA", + "L4440", + "M13 Forward", + "M13 Reverse", + "M13 fwd", + "M13 rev", + "M13/pUC Forward", + "M13/pUC Reverse", + "T7", + "T7 promoter", + "V5 tag", + "attB1", + "attB2", + "bGH poly(A) signal", + "lac operator", + "lac promoter", + "loxP", + "ori", + "pBABE 3'", + "pBR322ori-F", + "pBRforEco", + "pGEX 3'", + "pRS-marker" + ] + }, + { + "source": "addgene", + "plasmid_name": "pDONR221_SLC25A17", + "sequence-type": "addgene-full", + "addgene_id": "131991", + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" ], - "features": [ - "Amp-R", - "AmpR", - "AmpR promoter", - "BGH-rev", - "CAP binding site", - "EBV-rev", - "EF-1-alpha intron A", - "EF-1-alpha promoter", - "EF1a-F", - "HA", - "L4440", - "M13 Forward", - "M13 Reverse", - "M13 fwd", - "M13 rev", - "M13/pUC Forward", - "M13/pUC Reverse", - "T7", - "T7 promoter", - "V5 tag", - "attB1", - "attB2", - "bGH poly(A) signal", - "lac operator", - "lac promoter", - "loxP", - "ori", - "pBABE 3'", - "pBR322ori-F", - "pBRforEco", - "pGEX 3'", - "pRS-marker" - ] - }, - { - "source": "addgene", - "plasmid_name": "pDONR221_SLC25A17", - "sequence-type": "addgene-full", - "addgene_id": "131991", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -147911,7 +156796,10 @@ "plasmid_name": "pSLIK 3xFLAG-BCAS2 zeo", "sequence-type": "addgene-full", "addgene_id": "192319", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -147976,7 +156864,10 @@ "plasmid_name": "FIP1L1", "sequence-type": "addgene-full", "addgene_id": "155605", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -148019,7 +156910,10 @@ "plasmid_name": "pDONR221-SLC18A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161175", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -148050,7 +156944,10 @@ "plasmid_name": "pDONR223_GALNT14_p.F285L", "sequence-type": "addgene-full", "addgene_id": "81550", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -148082,7 +156979,10 @@ "plasmid_name": "pDONR223_KEAP1_p.G417R", "sequence-type": "addgene-full", "addgene_id": "82836", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL2" @@ -148109,7 +157009,10 @@ "plasmid_name": "pCK083 desmaMCS:minpromEGFP,exorh:mCherry", "sequence-type": "addgene-full", "addgene_id": "200016", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attB1", @@ -148157,7 +157060,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep27", "sequence-type": "addgene-full", "addgene_id": "136858", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -148200,7 +157106,10 @@ "plasmid_name": "pCellFree_G02", "sequence-type": "depositor-full", "addgene_id": "67136", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "att_sites": [ "attR1", @@ -148237,7 +157146,10 @@ "plasmid_name": "pT3-EF1aH N90-beta-catenin", "sequence-type": "addgene-full", "addgene_id": "86499", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0706578104", + "https://www.ncbi.nlm.nih.gov/pubmed/17785413" + ], "kit": null, "att_sites": [ "attB1", @@ -148279,7 +157191,10 @@ "plasmid_name": "ph2m", "sequence-type": "depositor-full", "addgene_id": "22518", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "att_sites": [ "attB1", @@ -148313,7 +157228,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-miRFP713-RfA", "sequence-type": "addgene-full", "addgene_id": "186381", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -148358,7 +157272,10 @@ "plasmid_name": "JD690", "sequence-type": "addgene-full", "addgene_id": "160397", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0703-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33046875" + ], "kit": null, "att_sites": [ "attB1", @@ -148403,7 +157320,10 @@ "plasmid_name": "IGF1R_pLX307", "sequence-type": "addgene-full", "addgene_id": "98344", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -148463,7 +157383,10 @@ "plasmid_name": "pENTR-D-kcnj1b", "sequence-type": "addgene-full", "addgene_id": "173126", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -148494,7 +157417,10 @@ "plasmid_name": "pLX_TRC311 ETV5", "sequence-type": "depositor-full", "addgene_id": "74984", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/28178529" + ], "kit": null, "att_sites": [ "attB1", @@ -148552,7 +157478,9 @@ "plasmid_name": "pDONR221-DHTKD1", "sequence-type": "addgene-full", "addgene_id": "166168", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -148583,7 +157511,10 @@ "plasmid_name": "pDONR223-ZNF488", "sequence-type": "addgene-full", "addgene_id": "88188", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -148612,7 +157543,10 @@ "plasmid_name": "CHAF1B_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177009", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -148667,7 +157601,10 @@ "plasmid_name": "HRas (G12V, E37G)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64640", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attB1", @@ -148726,7 +157663,10 @@ "plasmid_name": "IP803: pMAGIC (R4-R3) NLS-Sa dCas9-NLS-Dnmt3a3L", "sequence-type": "addgene-full", "addgene_id": "121826", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -148760,7 +157700,10 @@ "plasmid_name": "pENTR223-BALF0/1", "sequence-type": "addgene-full", "addgene_id": "198588", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -148789,7 +157732,10 @@ "plasmid_name": "pDONR221-MICU1-sh1-rORF", "sequence-type": "depositor-full", "addgene_id": "31764", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09358", + "https://www.ncbi.nlm.nih.gov/pubmed/20693986" + ], "kit": null, "att_sites": [ "attL1", @@ -148820,7 +157766,10 @@ "plasmid_name": "KN401: pMVP (L3-L2) FKBP DD + WPRE", "sequence-type": "addgene-full", "addgene_id": "121792", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -148855,7 +157804,10 @@ "plasmid_name": "pDONR221-kcnk15", "sequence-type": "addgene-full", "addgene_id": "208998", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -148886,7 +157838,10 @@ "plasmid_name": "pPB-MPP8-112\u2013858_Flag2-Blast", "sequence-type": "addgene-full", "addgene_id": "175039", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-23308-4", + "https://www.ncbi.nlm.nih.gov/pubmed/34031396" + ], "kit": null, "att_sites": [ "attB1", @@ -148937,7 +157892,9 @@ "plasmid_name": "pPB-cT3G-cERP2-NFYB", "sequence-type": "addgene-full", "addgene_id": "222561", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -148983,7 +157940,10 @@ "plasmid_name": "pME-mTagBFP", "sequence-type": "depositor-full", "addgene_id": "75148", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -149018,7 +157978,10 @@ "plasmid_name": "pME-gata2a", "sequence-type": "addgene-full", "addgene_id": "132977", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "att_sites": [ "attL1", @@ -149050,7 +158013,9 @@ "plasmid_name": "pDONR221-SNRPA1", "sequence-type": "addgene-full", "addgene_id": "166213", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -149081,7 +158046,10 @@ "plasmid_name": "pMH-SFB-RNF169", "sequence-type": "addgene-full", "addgene_id": "99392", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M112.373530", + "https://www.ncbi.nlm.nih.gov/pubmed/22733822" + ], "kit": null, "file": "data/addgene_plasmids/99392.addgene-full.gb" }, @@ -149090,7 +158058,10 @@ "plasmid_name": "pDD401", "sequence-type": "addgene-full", "addgene_id": "91828", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "att_sites": [ "attL1", @@ -149123,7 +158094,10 @@ "plasmid_name": "TFORF3074", "sequence-type": "addgene-full", "addgene_id": "144550", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -149183,7 +158157,10 @@ "plasmid_name": "pDONR221-SLC49A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161334", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -149214,7 +158191,10 @@ "plasmid_name": "pMMK ENTR 4 CMV eGFP", "sequence-type": "addgene-full", "addgene_id": "206272", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL2", @@ -149249,7 +158229,10 @@ "plasmid_name": "pDONR223_AKT1_WT", "sequence-type": "addgene-full", "addgene_id": "81764", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -149261,7 +158244,10 @@ "plasmid_name": "pDONR221-SLC9A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161341", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -149292,7 +158278,9 @@ "plasmid_name": "p3E-V5-mTagBFP2 (JDW 871)", "sequence-type": "addgene-full", "addgene_id": "224531", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -149328,7 +158316,10 @@ "plasmid_name": "pDESTmycEIF2C1", "sequence-type": "depositor-full", "addgene_id": "19871", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1" @@ -149374,7 +158365,10 @@ "plasmid_name": "pDONR223_GTPBP8_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82979", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -149403,7 +158397,10 @@ "plasmid_name": "pDONR223_SMAD4_p.K519N", "sequence-type": "addgene-full", "addgene_id": "81484", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -149435,7 +158432,10 @@ "plasmid_name": "pMetYC-Dest", "sequence-type": "addgene-full", "addgene_id": "105081", - "references": [], + "references": [ + "https://doi.org/10.1002/0471142301.ns0527s41", + "https://www.ncbi.nlm.nih.gov/pubmed/18428659" + ], "kit": null, "att_sites": [ "attR1", @@ -149485,7 +158485,10 @@ "plasmid_name": "KU801: pMVP (L5-L4) mCherry", "sequence-type": "addgene-full", "addgene_id": "121709", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -149520,7 +158523,6 @@ "plasmid_name": "R777-E277 Hs.RHOA", "sequence-type": "depositor-full", "addgene_id": "70561", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -149549,7 +158551,10 @@ "plasmid_name": "pHAGE-EGFR-A289V", "sequence-type": "addgene-full", "addgene_id": "116230", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -149599,7 +158604,10 @@ "plasmid_name": "pLVX-BirA-UBE3B-Puro", "sequence-type": "addgene-full", "addgene_id": "107351", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "att_sites": [ "attB1", @@ -149649,7 +158657,10 @@ "plasmid_name": "TFORF3428", "sequence-type": "addgene-full", "addgene_id": "144904", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -149709,7 +158720,10 @@ "plasmid_name": "5'-3xFLAG Zmynd8-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212078", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -149749,7 +158763,10 @@ "plasmid_name": "pCFJ351 - MCS(cxTi10882, IV)", "sequence-type": "depositor-full", "addgene_id": "34867", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attB1", @@ -149782,7 +158799,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP3", "sequence-type": "addgene-full", "addgene_id": "158354", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -149827,7 +158847,10 @@ "plasmid_name": "pLD-puro-Cc-CR-PARK7H126A-VA", "sequence-type": "addgene-full", "addgene_id": "115190", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attB1", @@ -149889,7 +158912,10 @@ "plasmid_name": "TFORF3283", "sequence-type": "addgene-full", "addgene_id": "144759", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -149949,7 +158975,6 @@ "plasmid_name": "R777-E352 Hs.TP53-nostop", "sequence-type": "depositor-full", "addgene_id": "70636", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -149978,7 +159003,10 @@ "plasmid_name": "pAG305GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14185", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -150037,7 +159065,10 @@ "plasmid_name": "pSLIK 3xFLAG-NUP37 zeo", "sequence-type": "addgene-full", "addgene_id": "192324", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -150102,7 +159133,10 @@ "plasmid_name": "SUN2delSUN", "sequence-type": "addgene-full", "addgene_id": "130835", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attB1", @@ -150137,7 +159171,10 @@ "plasmid_name": "pDONR223_GPR137B_WT", "sequence-type": "addgene-full", "addgene_id": "82890", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -150166,7 +159203,10 @@ "plasmid_name": "pDONR221-SLC25A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161148", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -150197,7 +159237,10 @@ "plasmid_name": "pEBTetDBl-CLIP-CPAP", "sequence-type": "addgene-full", "addgene_id": "136865", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -150239,7 +159282,6 @@ "plasmid_name": "MAPK9_BirA_Nterm", "sequence-type": "addgene-full", "addgene_id": "221521", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -150283,7 +159325,10 @@ "plasmid_name": "pENTR1A-3xFlag-M694V-MEFV", "sequence-type": "addgene-full", "addgene_id": "167118", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-2449-4_12", + "https://www.ncbi.nlm.nih.gov/pubmed/35759198" + ], "kit": null, "att_sites": [ "attL1", @@ -150308,7 +159353,6 @@ "plasmid_name": "R777-E067 Hs.EXOC1", "sequence-type": "depositor-full", "addgene_id": "70351", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -150336,7 +159380,10 @@ "plasmid_name": "TFORF3400", "sequence-type": "addgene-full", "addgene_id": "144876", - 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"references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -150587,7 +159645,10 @@ "plasmid_name": "pDONR221_SLC7A2", "sequence-type": "addgene-full", "addgene_id": "131937", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -150618,7 +159679,10 @@ "plasmid_name": "pAFW-Ago2", "sequence-type": "depositor-full", "addgene_id": "50554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2010.05.015", + "https://www.ncbi.nlm.nih.gov/pubmed/20605501" + ], "kit": null, "att_sites": [ "attB1", @@ -150647,7 +159711,10 @@ "plasmid_name": "actc1b-GalT-mKate2", "sequence-type": "addgene-full", "addgene_id": "109506", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -150687,7 +159754,10 @@ "plasmid_name": "TFORF2946", "sequence-type": "addgene-full", "addgene_id": "144422", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -150747,7 +159817,10 @@ "plasmid_name": "pLenti PKAKTRn-Clover", "sequence-type": "addgene-full", "addgene_id": "177200", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2022.02.006", + "https://www.ncbi.nlm.nih.gov/pubmed/35316656" + ], "kit": null, "att_sites": [ "attB1", @@ -150809,7 +159882,10 @@ "plasmid_name": "pAG305GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14378", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -150867,7 +159943,10 @@ "plasmid_name": "pGWB518", "sequence-type": "depositor-full", "addgene_id": "74860", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -150915,7 +159994,10 @@ "plasmid_name": "543-p3E-2A-mcherrypA", "sequence-type": "addgene-full", "addgene_id": "26031", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.084152", + "https://www.ncbi.nlm.nih.gov/pubmed/23462469" + ], "kit": null, "att_sites": [ "attL3", @@ -150953,7 +160035,10 @@ "plasmid_name": "Epac-S-H170", "sequence-type": "addgene-full", "addgene_id": "170352", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0122513", + "https://www.ncbi.nlm.nih.gov/pubmed/25875503" + ], "kit": null, "att_sites": [ "attB1" @@ -150990,7 +160075,10 @@ "plasmid_name": "p5E_GGWDest-", "sequence-type": "depositor-full", "addgene_id": "49318", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -151028,7 +160116,10 @@ "plasmid_name": "pDONR221-SLC2A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161233", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -151059,7 +160150,10 @@ "plasmid_name": "pLEX305-N-dTAG-CARD8", "sequence-type": "addgene-full", "addgene_id": "169989", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attB1", @@ -151105,7 +160199,10 @@ "plasmid_name": "pDONR223_TMPO_p.D185H", "sequence-type": "addgene-full", "addgene_id": "81616", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -151137,7 +160234,9 @@ "plasmid_name": "pDONR221-ATP6V1B2", "sequence-type": "addgene-full", "addgene_id": "166155", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -151168,7 +160267,10 @@ "plasmid_name": "LB001: pMAGIC (L3-L2) 3x HA epitope tag + polyA; hU6::Sp/xCas9 TRE#2 gRNA", "sequence-type": "addgene-full", "addgene_id": "131757", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -151205,7 +160307,10 @@ "plasmid_name": "pHAGE-EGFR-R521K", "sequence-type": "addgene-full", "addgene_id": "116296", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -151259,7 +160364,10 @@ "plasmid_name": "pAC1819_pCR8-DR-SMN2-2-DR", "sequence-type": "addgene-full", "addgene_id": "118653", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -151293,7 +160401,10 @@ "plasmid_name": "pThy1-Brainbow3.0", "sequence-type": "depositor-full", "addgene_id": "45177", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2450", + "https://www.ncbi.nlm.nih.gov/pubmed/23817127" + ], "kit": null, "att_sites": [ "attB1", @@ -151329,7 +160440,10 @@ "plasmid_name": "pCS2 LRP6-eGFP", "sequence-type": "addgene-full", "addgene_id": "180143", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-78019-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33299006" + ], "kit": null, "att_sites": [ "attB1", @@ -151373,7 +160487,10 @@ "plasmid_name": "pDEST-actc1b-mKate2-ccdb", "sequence-type": "addgene-full", "addgene_id": "109732", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -151420,7 +160537,10 @@ "plasmid_name": "TFORF3140", "sequence-type": "addgene-full", "addgene_id": "144616", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -151480,7 +160600,10 @@ "plasmid_name": "pcDNA3.2 TDP-43 5F-L YFP", "sequence-type": "addgene-full", "addgene_id": "84914", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09320", + "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + ], "kit": null, "att_sites": [ "attB1", @@ -151534,7 +160657,10 @@ "plasmid_name": "pDONR223_CNBD1_p.F343C", "sequence-type": "addgene-full", "addgene_id": "81422", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -151566,7 +160692,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-mir-92a", "sequence-type": "depositor-full", "addgene_id": "46666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -151616,7 +160745,10 @@ "plasmid_name": "A1-LCD-20G+20S+7F-7Y", "sequence-type": "addgene-full", "addgene_id": "178688", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -151651,7 +160783,10 @@ "plasmid_name": "pTol2CG NBT:NRGIIIa:polyA", "sequence-type": "addgene-full", "addgene_id": "193012", - "references": [], + "references": [ + "https://doi.org/10.1002/humu.24393", + "https://www.ncbi.nlm.nih.gov/pubmed/35485770" + ], "kit": null, "att_sites": [ "attB1", @@ -151693,7 +160828,10 @@ "plasmid_name": "pDONR223_GPR141_WT", "sequence-type": "addgene-full", "addgene_id": "81876", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -151725,7 +160863,10 @@ "plasmid_name": "p{ie1-DsRed::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182173", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attR1", @@ -151772,7 +160913,10 @@ "plasmid_name": "p7055 pHAGE-P-CMVt-N-HA-GAW-COPZ1", "sequence-type": "addgene-full", "addgene_id": "100145", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -151824,7 +160968,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK31_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189880", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -151890,7 +161033,10 @@ "plasmid_name": "pYPQ285 (Lb5Cas12a)", "sequence-type": "addgene-full", "addgene_id": "138120", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -151922,7 +161068,10 @@ "plasmid_name": "pHAGE-BRAF-L584F", "sequence-type": "addgene-full", "addgene_id": "116176", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -151977,7 +161126,10 @@ "plasmid_name": "pDONR223_HcRed", "sequence-type": "depositor-full", "addgene_id": "25892", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "att_sites": [ "attL1", @@ -152007,7 +161159,10 @@ "plasmid_name": "TFORF3527", "sequence-type": "depositor-full", "addgene_id": "145003", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -152067,7 +161222,10 @@ "plasmid_name": "IO502: pMVP (R4-R3) eCFP", "sequence-type": "addgene-full", "addgene_id": "121734", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -152102,7 +161260,6 @@ "plasmid_name": "R777-E201 Hs.PRKAG2", "sequence-type": "depositor-full", "addgene_id": "70485", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -152130,7 +161287,10 @@ "plasmid_name": "pAG414GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14336", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -152191,7 +161351,6 @@ "plasmid_name": "pGEX6P1-DEST-HA", "sequence-type": "addgene-full", "addgene_id": "119751", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -152236,7 +161395,10 @@ "plasmid_name": "pGC244", "sequence-type": "depositor-full", "addgene_id": "19672", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR3", @@ -152273,7 +161435,10 @@ "plasmid_name": "pDONR223_MAX_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82944", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -152303,7 +161468,6 @@ "plasmid_name": "p663-UBC-V5-3xHA-miniTurbo-3XNLS-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158160", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -152370,7 +161534,10 @@ "plasmid_name": "TFORF3463", "sequence-type": "addgene-full", "addgene_id": "144939", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -152430,7 +161597,10 @@ "plasmid_name": "pENTR1A_mmFbxw7(res) (closed)", "sequence-type": "addgene-full", "addgene_id": "160105", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attL1", @@ -152454,7 +161624,9 @@ "plasmid_name": "p3E-H2A_mCherry_SV40pA (JDW 967)", "sequence-type": "addgene-full", "addgene_id": "224528", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -152491,7 +161663,10 @@ "plasmid_name": "pDONR221-SLC4A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161358", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -152522,7 +161697,10 @@ "plasmid_name": "pDONR221-ZNF470", "sequence-type": "depositor-full", "addgene_id": "101564", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -152553,7 +161731,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-irf2bpl D", "sequence-type": "addgene-full", "addgene_id": "89373", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -152607,7 +161788,10 @@ "plasmid_name": "TFORF3073", "sequence-type": "addgene-full", "addgene_id": "144549", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144549.addgene-full.gb" }, @@ -152616,7 +161800,10 @@ "plasmid_name": "BTG4", "sequence-type": "addgene-full", "addgene_id": "155428", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -152659,7 +161846,10 @@ "plasmid_name": "pDD364", "sequence-type": "addgene-full", "addgene_id": "91831", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "att_sites": [ "attB1", @@ -152698,7 +161888,10 @@ "plasmid_name": "pLVX-HA-UBE3B(C1036A)-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107348", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "file": "data/addgene_plasmids/107348.addgene-full.gb" }, @@ -152707,7 +161900,10 @@ "plasmid_name": "pHAGE-EGFR-A289T", "sequence-type": "addgene-full", "addgene_id": "116229", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -152757,7 +161953,10 @@ "plasmid_name": "KP301: pMVP (L5-L4) mCherry-P2A", "sequence-type": "addgene-full", "addgene_id": "121710", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -152793,7 +161992,10 @@ "plasmid_name": "pDONR223_ID2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82960", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -152822,7 +162024,10 @@ "plasmid_name": "pDONR223_EDNRB_p.L349I", "sequence-type": "addgene-full", "addgene_id": "81406", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -152854,7 +162059,10 @@ "plasmid_name": "pEPYCdKN0022", "sequence-type": "addgene-full", "addgene_id": "196154", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attB1", @@ -152894,7 +162102,6 @@ "plasmid_name": "R777-E249 Hs.RASGRP4", "sequence-type": "depositor-full", "addgene_id": "70533", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -152922,7 +162129,10 @@ "plasmid_name": "DsRed2_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177010", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -152975,7 +162185,9 @@ "plasmid_name": "pDONR221-EHD1", "sequence-type": "addgene-full", "addgene_id": "166171", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -153006,7 +162218,10 @@ "plasmid_name": "pAG304GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14280", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -153064,7 +162279,10 @@ "plasmid_name": "TFORF3156", "sequence-type": "addgene-full", "addgene_id": "144632", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -153124,7 +162342,10 @@ "plasmid_name": "p3E-rab5aa", "sequence-type": "addgene-full", "addgene_id": "109716", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -153155,7 +162376,10 @@ "plasmid_name": "pLenti6.3/TO/V5-DEST-IGFBP2", "sequence-type": "addgene-full", "addgene_id": "191006", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg1840", + "https://www.ncbi.nlm.nih.gov/pubmed/37436978" + ], "kit": null, "att_sites": [ "attB1", @@ -153214,7 +162438,10 @@ "plasmid_name": "pDEST 566-XERICO", "sequence-type": "addgene-full", "addgene_id": "118677", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -153259,7 +162486,10 @@ "plasmid_name": "pHAGE-BRAF-G466V", "sequence-type": "addgene-full", "addgene_id": "116152", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -153314,7 +162544,10 @@ "plasmid_name": "p7134 pHAGE-P-CMVt-N-HA-GAW-WDR92", "sequence-type": "addgene-full", "addgene_id": "100161", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -153366,7 +162599,10 @@ "plasmid_name": "pDONR221-rap1-K462-463-651R", "sequence-type": "addgene-full", "addgene_id": "84564", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.185793.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25800674" + ], "kit": null, "att_sites": [ "attL1", @@ -153395,7 +162631,10 @@ "plasmid_name": "pDONR223_BAP1_WT", "sequence-type": "addgene-full", "addgene_id": "81852", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -153428,7 +162667,10 @@ "plasmid_name": "pDONR221-kcnk1a", "sequence-type": "addgene-full", "addgene_id": "208981", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -153459,7 +162701,9 @@ "plasmid_name": "pPB-cT3G-cERP2-DPPA3", "sequence-type": "addgene-full", "addgene_id": "222578", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -153505,7 +162749,10 @@ "plasmid_name": "pME-H2B-mCerulean3-P2A-mKOFP2-CAAX", "sequence-type": "depositor-full", "addgene_id": "75154", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -153517,7 +162764,10 @@ "plasmid_name": "TFORF3376", "sequence-type": "addgene-full", "addgene_id": "144852", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -153577,7 +162827,10 @@ "plasmid_name": "pDONR221_SLC44A1", "sequence-type": "addgene-full", "addgene_id": "131913", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -153608,7 +162861,10 @@ "plasmid_name": "KIF1C", "sequence-type": "addgene-full", "addgene_id": "155687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -153652,7 +162908,10 @@ "plasmid_name": "pDONR-IAA5", "sequence-type": "depositor-full", "addgene_id": "83867", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -153683,7 +162942,10 @@ "plasmid_name": "pEBTetDBl-CLIP-\u03b1-tubulin", "sequence-type": "addgene-full", "addgene_id": "136841", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -153725,7 +162987,9 @@ "plasmid_name": "pASZ-CN-DM", "sequence-type": "addgene-full", "addgene_id": "111234", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25814554" + ], "kit": null, "att_sites": [ "attR1", @@ -153769,7 +163033,10 @@ "plasmid_name": "pDONR221-SLC25A22_STOP", "sequence-type": "addgene-full", "addgene_id": "161217", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -153800,7 +163067,10 @@ "plasmid_name": "pDEST-CMV-N-EGFP", "sequence-type": "addgene-full", "addgene_id": "122842", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attR1", @@ -153858,7 +163128,9 @@ "plasmid_name": "p5E-EF1a/b-globin", "sequence-type": "depositor-full", "addgene_id": "82582", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24643048" + ], "kit": null, "file": "data/addgene_plasmids/82582.depositor-full.gb" }, @@ -153867,7 +163139,10 @@ "plasmid_name": "pDONR223_SPOP_p.W131G", "sequence-type": "addgene-full", "addgene_id": "81632", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -153899,7 +163174,10 @@ "plasmid_name": "MAC_N_COMMD5", "sequence-type": "addgene-full", "addgene_id": "209678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -153944,7 +163222,10 @@ "plasmid_name": "actc1b-mKate2-Dnm2b-DN", "sequence-type": "addgene-full", "addgene_id": "109522", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -153986,7 +163267,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-Swa1::venus-RfA", "sequence-type": "addgene-full", "addgene_id": "186398", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -154027,7 +163311,10 @@ "plasmid_name": "MAC-SARS-CoV-2 N", "sequence-type": "addgene-full", "addgene_id": "158370", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -154073,7 +163360,10 @@ "plasmid_name": "pMXs-Oct3/4-IP", "sequence-type": "addgene-full", "addgene_id": "15918", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.07.024", + "https://www.ncbi.nlm.nih.gov/pubmed/16904174" + ], "kit": null, "att_sites": [ "attB1", @@ -154107,7 +163397,10 @@ "plasmid_name": "BCL6-GFP Y58A in Artichoke", "sequence-type": "addgene-full", "addgene_id": "169936", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2925-1", + "https://www.ncbi.nlm.nih.gov/pubmed/33208943" + ], "kit": null, "att_sites": [ "attB2" @@ -154175,7 +163468,10 @@ "plasmid_name": "pDONR223_GPR156_p.C763S", "sequence-type": "addgene-full", "addgene_id": "81549", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -154207,7 +163503,10 @@ "plasmid_name": "pDONR221_SLC22A23", "sequence-type": "addgene-full", "addgene_id": "131988", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131988.addgene-full.gb" }, @@ -154216,7 +163515,10 @@ "plasmid_name": "pEN_TT 3xFLAG-PFN2_variant2", "sequence-type": "addgene-full", "addgene_id": "192300", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -154245,7 +163547,10 @@ "plasmid_name": "pGP8GF-AtAFB2", "sequence-type": "addgene-full", "addgene_id": "188426", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attR2" @@ -154288,7 +163593,10 @@ "plasmid_name": "actc1b-mKate2-rab9a", "sequence-type": "addgene-full", "addgene_id": "109659", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -154330,7 +163638,10 @@ "plasmid_name": "pMSCV-MAP3K2", "sequence-type": "addgene-full", "addgene_id": "85652", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13320", + "https://www.ncbi.nlm.nih.gov/pubmed/24847881" + ], "kit": null, "att_sites": [ "attB1", @@ -154373,7 +163684,10 @@ "plasmid_name": "pDONR223_PRDM1_WT", "sequence-type": "addgene-full", "addgene_id": "81740", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -154405,7 +163719,10 @@ "plasmid_name": "pAG424GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14199", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -154417,7 +163734,10 @@ "plasmid_name": "pMMK ENTR 3 CMV mito mCherry", "sequence-type": "addgene-full", "addgene_id": "206256", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL4", @@ -154448,7 +163768,6 @@ "plasmid_name": "R619-X67-527: His6-SARS-CoV-2 N", "sequence-type": "addgene-full", "addgene_id": "170204", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -154491,7 +163810,9 @@ "plasmid_name": "pME nls EGFP-Cre (JDW 1329)", "sequence-type": "addgene-full", "addgene_id": "224515", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -154527,7 +163848,10 @@ "plasmid_name": "pDONR221-SLC9A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161365", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -154558,7 +163882,10 @@ "plasmid_name": "pFL-EGFP-3xFlag-DEST", "sequence-type": "addgene-full", "addgene_id": "134903", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111749", + "https://www.ncbi.nlm.nih.gov/pubmed/36476850" + ], "kit": null, "att_sites": [ "attR1", @@ -154607,7 +163934,10 @@ "plasmid_name": "TFORF3098", "sequence-type": "addgene-full", "addgene_id": "144574", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -154667,7 +163997,10 @@ "plasmid_name": "TFORF3218", "sequence-type": "addgene-full", "addgene_id": "144694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -154727,7 +164060,10 @@ "plasmid_name": "TFORF3444", "sequence-type": "addgene-full", "addgene_id": "144920", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -154787,7 +164123,10 @@ "plasmid_name": "plenti-UbcP-FLAG-YWAA-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107375", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -154846,7 +164185,6 @@ "plasmid_name": "pREP4xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79022", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -154889,7 +164227,10 @@ "plasmid_name": "pHAGE-CCND1-T286I", "sequence-type": "addgene-full", "addgene_id": "116214", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -154940,7 +164281,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK15_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158179", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -155006,7 +164346,10 @@ "plasmid_name": "pDONR221-SLC10A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161085", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -155037,7 +164380,9 @@ "plasmid_name": "pLV-REPORT(PGKCMV)-nucTomato-hygro", "sequence-type": "addgene-full", "addgene_id": "208573", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/208573.addgene-full.gb" }, @@ -155046,7 +164391,10 @@ "plasmid_name": "pDONR223_NKX2-1_HD_160-223AA", "sequence-type": "addgene-full", "addgene_id": "221477", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attL1", @@ -155075,7 +164423,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 S_nostop", "sequence-type": "addgene-full", "addgene_id": "152988", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -155104,7 +164455,10 @@ "plasmid_name": "pAG416GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14364", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -155163,7 +164517,10 @@ "plasmid_name": "KO602: pMVP (L3-L2) HA tag + pA; CMV::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121802", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -155201,7 +164558,10 @@ "plasmid_name": "pGCS-N3(3xFLAG)", "sequence-type": "addgene-full", "addgene_id": "85720", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -155248,7 +164608,10 @@ "plasmid_name": "CMYA5/pENTR3C", "sequence-type": "addgene-full", "addgene_id": "97408", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "att_sites": [ "attL1", @@ -155274,7 +164637,10 @@ "plasmid_name": "pYZ673", "sequence-type": "addgene-full", "addgene_id": "132953", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkaa329", + "https://www.ncbi.nlm.nih.gov/pubmed/32374858" + ], "kit": null, "file": "data/addgene_plasmids/132953.addgene-full.gb" }, @@ -155283,7 +164649,6 @@ "plasmid_name": "pLIX-hN1ICD", "sequence-type": "addgene-full", "addgene_id": "91897", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -155338,7 +164703,6 @@ "plasmid_name": "pLIX_403", "sequence-type": "addgene-full", "addgene_id": "41395", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -155398,7 +164762,9 @@ "plasmid_name": "pPB-cT3G-cERP2-RFX5", "sequence-type": "addgene-full", "addgene_id": "222545", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -155444,7 +164810,6 @@ "plasmid_name": "p667-UBC-SBK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189899", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -155509,7 +164874,10 @@ "plasmid_name": "A1-LCD+23G-23S-12F+12Y", "sequence-type": "addgene-full", "addgene_id": "178691", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -155544,7 +164912,10 @@ "plasmid_name": "pDONR223_EGFR_p.Q1020H", "sequence-type": "addgene-full", "addgene_id": "82812", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -155574,7 +164945,10 @@ "plasmid_name": "PPP6C_pLX307", "sequence-type": "addgene-full", "addgene_id": "98360", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -155634,7 +165008,10 @@ "plasmid_name": "pLEX305-N-dTAG-CARD8-ZUC", "sequence-type": "addgene-full", "addgene_id": "169990", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attB1", @@ -155694,7 +165071,10 @@ "plasmid_name": "pCSF107mT-GATEWAY-3'-FLAG", "sequence-type": "addgene-full", "addgene_id": "67619", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2015.09.004", + "https://www.ncbi.nlm.nih.gov/pubmed/26391338" + ], "kit": null, "att_sites": [ "attR1", @@ -155742,7 +165122,10 @@ "plasmid_name": "MyoUTipGAPi", "sequence-type": "addgene-full", "addgene_id": "127549", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.20.00865", + "https://www.ncbi.nlm.nih.gov/pubmed/32764132" + ], "kit": null, "att_sites": [ "attB1", @@ -155775,7 +165158,10 @@ "plasmid_name": "pcDNA3.2/v5-DEST hGlut2", "sequence-type": "addgene-full", "addgene_id": "18086", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.09-146472", + "https://www.ncbi.nlm.nih.gov/pubmed/20354141" + ], "kit": null, "att_sites": [ "attB1", @@ -155825,7 +165211,10 @@ "plasmid_name": "pGWB-nLUC", "sequence-type": "addgene-full", "addgene_id": "174050", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1008933", + "https://www.ncbi.nlm.nih.gov/pubmed/32976518" + ], "kit": null, "att_sites": [ "attR1", @@ -155873,7 +165262,10 @@ "plasmid_name": "pAdCMV/V5-DEST-S727A-STAT3-3xFlag", "sequence-type": "addgene-full", "addgene_id": "99262", - "references": [], + "references": [ + "https://doi.org/10.1152/ajpcell.00235.2017", + "https://www.ncbi.nlm.nih.gov/pubmed/29351406" + ], "kit": null, "file": "data/addgene_plasmids/99262.addgene-full.gb" }, @@ -155882,7 +165274,10 @@ "plasmid_name": "pGWB450", "sequence-type": "depositor-full", "addgene_id": "74832", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -155931,7 +165326,6 @@ "plasmid_name": "R777-E215 Hs.RALA", "sequence-type": "depositor-full", "addgene_id": "70499", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -155959,7 +165353,10 @@ "plasmid_name": "p3E-CDC42-DN", "sequence-type": "addgene-full", "addgene_id": "109584", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -155990,7 +165387,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.G34V", "sequence-type": "addgene-full", "addgene_id": "81694", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -156020,7 +165420,10 @@ "plasmid_name": "pFPL-Rh", "sequence-type": "addgene-full", "addgene_id": "61649", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-05-14-0144-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/25390188" + ], "kit": null, "att_sites": [ "attR1", @@ -156068,7 +165471,10 @@ "plasmid_name": "p8221 pLIX-PTPN14", "sequence-type": "addgene-full", "addgene_id": "221643", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "att_sites": [ "attB1", @@ -156123,7 +165529,10 @@ "plasmid_name": "5'-3xFLAG Med24+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212061", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -156163,7 +165572,10 @@ "plasmid_name": "pDONR223_MAP2K1_WT", "sequence-type": "addgene-full", "addgene_id": "81920", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -156195,7 +165607,10 @@ "plasmid_name": "pDONR221-SLC18A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161151", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -156227,7 +165642,10 @@ "plasmid_name": "pDONR223_ATF2_WT", "sequence-type": "addgene-full", "addgene_id": "82889", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -156256,7 +165674,10 @@ "plasmid_name": "pENTR-BsaI", "sequence-type": "addgene-full", "addgene_id": "54340", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "att_sites": [ "attL1", @@ -156292,7 +165713,6 @@ "plasmid_name": "R777-E019 Hs.CCND2", "sequence-type": "depositor-full", "addgene_id": "70303", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -156320,7 +165740,10 @@ "plasmid_name": "pDONR223_TRAF3_p.N312S", "sequence-type": "addgene-full", "addgene_id": "81574", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -156352,7 +165775,10 @@ "plasmid_name": "p3E-rab11ba", "sequence-type": "addgene-full", "addgene_id": "109664", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -156383,7 +165809,10 @@ "plasmid_name": "TFORF3264", "sequence-type": "addgene-full", "addgene_id": "144740", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -156444,7 +165873,6 @@ "plasmid_name": "pDONR223 Rab25-STOP", "sequence-type": "addgene-full", "addgene_id": "228034", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -156473,7 +165901,10 @@ "plasmid_name": "pLD-puro-Cc-CR-PARK7C53A-VA", "sequence-type": "addgene-full", "addgene_id": "115189", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attB1", @@ -156535,7 +165966,10 @@ "plasmid_name": "pDONR221_TMEM104", "sequence-type": "addgene-full", "addgene_id": "132262", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -156566,7 +166000,6 @@ "plasmid_name": "g16s pDONR", "sequence-type": "addgene-full", "addgene_id": "117473", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -156597,7 +166030,10 @@ "plasmid_name": "p8319 pDONR ATG-YAP1 WT-Stop", "sequence-type": "addgene-full", "addgene_id": "184524", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184524.addgene-full.gb" }, @@ -156606,7 +166042,10 @@ "plasmid_name": "MAC_N_TEAD2", "sequence-type": "addgene-full", "addgene_id": "167804", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -156651,7 +166090,10 @@ "plasmid_name": "pENTR223-BGLF4", "sequence-type": "addgene-full", "addgene_id": "195811", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -156680,7 +166122,10 @@ "plasmid_name": "Flag-HA-USP3", "sequence-type": "addgene-full", "addgene_id": "22582", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -156725,7 +166170,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L1R5", "sequence-type": "depositor-full", "addgene_id": "113737", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -156759,7 +166207,6 @@ "plasmid_name": "pLenti6.2-ccdB-Nanoluc", "sequence-type": "addgene-full", "addgene_id": "87075", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -156823,7 +166270,10 @@ "plasmid_name": "C514-E59: attB5r-RU5u-2xHA-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162966", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -156853,7 +166303,10 @@ "plasmid_name": "pAC150-RFP-EGFP-LGALS3", "sequence-type": "addgene-full", "addgene_id": "175778", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -156916,7 +166369,10 @@ "plasmid_name": "pWZL Neo Myr Flag TK1", "sequence-type": "addgene-full", "addgene_id": "20652", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -156957,7 +166413,10 @@ "plasmid_name": "GFP-BRD4", "sequence-type": "addgene-full", "addgene_id": "65378", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -157010,7 +166469,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD3-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113488", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -157054,7 +166516,10 @@ "plasmid_name": "pENTR221-Firefly", "sequence-type": "addgene-full", "addgene_id": "79495", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -157091,7 +166556,9 @@ "plasmid_name": "pLX317-MBNL1", "sequence-type": "addgene-full", "addgene_id": "115443", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "att_sites": [ "attB1", @@ -157151,7 +166618,10 @@ "plasmid_name": "pDONR221_SLC5A5", "sequence-type": "addgene-full", "addgene_id": "132182", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -157182,7 +166652,10 @@ "plasmid_name": "pENTR-L1-PGK-TKNeo-L2", "sequence-type": "addgene-full", "addgene_id": "141008", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL1", @@ -157211,7 +166684,6 @@ "plasmid_name": "pEF 1-2A11-4", "sequence-type": "depositor-full", "addgene_id": "20089", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -157242,7 +166714,9 @@ "plasmid_name": "pMpGWB414", "sequence-type": "depositor-full", "addgene_id": "68679", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68679.depositor-full.gb" }, @@ -157251,7 +166725,10 @@ "plasmid_name": "pInducer20-Blast-CDT1-HA", "sequence-type": "addgene-full", "addgene_id": "109335", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.30473", + "https://www.ncbi.nlm.nih.gov/pubmed/29148972" + ], "kit": null, "att_sites": [ "attB1", @@ -157307,7 +166784,10 @@ "plasmid_name": "pDONR223 LC3C WT", "sequence-type": "addgene-full", "addgene_id": "123078", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -157336,7 +166816,10 @@ "plasmid_name": "pDONR221_SLC37A2", "sequence-type": "addgene-full", "addgene_id": "132119", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -157367,7 +166850,10 @@ "plasmid_name": "pDONR221-TMEM241_STOP", "sequence-type": "depositor-full", "addgene_id": "161462", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -157398,7 +166884,10 @@ "plasmid_name": "pDONR221-SLC9A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161400", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -157429,7 +166918,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-BirA(R118G)-NES-YFP", "sequence-type": "addgene-full", "addgene_id": "127363", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attB1", @@ -157478,7 +166970,10 @@ "plasmid_name": "MSCVhyg-HA-FLAG_Ubc9_WT", "sequence-type": "addgene-full", "addgene_id": "164936", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "att_sites": [ "attB1" @@ -157519,7 +167014,10 @@ "plasmid_name": "pT2-cryR;dll4CE2-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90144", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -157567,7 +167065,10 @@ "plasmid_name": "pENTR D-TOPO-C3_31", "sequence-type": "depositor-full", "addgene_id": "60273", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60273.depositor-full.gb" }, @@ -157576,7 +167077,10 @@ "plasmid_name": "pHAGE-PIK3CD-K705E", "sequence-type": "addgene-full", "addgene_id": "116571", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -157630,7 +167134,10 @@ "plasmid_name": "pDONR223_CBR3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83015", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -157659,7 +167166,10 @@ "plasmid_name": "pJA258", "sequence-type": "depositor-full", "addgene_id": "21511", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "att_sites": [ "attL3", @@ -157692,7 +167202,10 @@ "plasmid_name": "pLenti6/UbC/mSlc7a1", "sequence-type": "addgene-full", "addgene_id": "17224", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.019", + "https://www.ncbi.nlm.nih.gov/pubmed/18035408" + ], "kit": null, "att_sites": [ "attB1", @@ -157747,7 +167260,10 @@ "plasmid_name": "pYPQ292", "sequence-type": "addgene-full", "addgene_id": "129672", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -157779,7 +167295,10 @@ "plasmid_name": "pENTR-NLS-actin", "sequence-type": "addgene-full", "addgene_id": "118380", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attL1", @@ -157811,7 +167330,10 @@ "plasmid_name": "pHAGE-FLT4", "sequence-type": "addgene-full", "addgene_id": "116745", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -157861,7 +167383,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-5", "sequence-type": "depositor-full", "addgene_id": "46700", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -157911,7 +167436,10 @@ "plasmid_name": "pDONR223-MERTK", "sequence-type": "addgene-full", "addgene_id": "23900", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -157943,7 +167471,10 @@ "plasmid_name": "pTW327", "sequence-type": "addgene-full", "addgene_id": "115958", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "att_sites": [ "attP1", @@ -157980,7 +167511,10 @@ "plasmid_name": "pDEST47-Arl13b12", "sequence-type": "addgene-full", "addgene_id": "40872", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E10-12-0994", + "https://www.ncbi.nlm.nih.gov/pubmed/21976698" + ], "kit": null, "att_sites": [ "attB1", @@ -158032,7 +167566,10 @@ "plasmid_name": "pCFJ1656", "sequence-type": "depositor-full", "addgene_id": "51483", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attR3", @@ -158066,7 +167603,10 @@ "plasmid_name": "pLX304-EZH1-D745N", "sequence-type": "addgene-full", "addgene_id": "203585", - "references": [], + "references": [ + "https://doi.org/10.1126/scitranslmed.aal5272", + "https://www.ncbi.nlm.nih.gov/pubmed/28701475" + ], "kit": null, "att_sites": [ "attB1", @@ -158125,7 +167665,6 @@ "plasmid_name": "IDG_KCNJ15_OE_1", "sequence-type": "addgene-full", "addgene_id": "161634", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -158184,7 +167723,10 @@ "plasmid_name": "Puro-iNgn3", "sequence-type": "depositor-full", "addgene_id": "75337", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2016.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/27133796" + ], "kit": null, "att_sites": [ "attB1", @@ -158235,7 +167777,9 @@ "plasmid_name": "pMpGWB309", "sequence-type": "depositor-full", "addgene_id": "68637", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -158282,7 +167826,10 @@ "plasmid_name": "ACA8-YFPn", "sequence-type": "addgene-full", "addgene_id": "87241", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.111.192575", + "https://www.ncbi.nlm.nih.gov/pubmed/22535420" + ], "kit": null, "att_sites": [ "attB1", @@ -158316,7 +167863,10 @@ "plasmid_name": "pDONR/Zeo-sfGFP-SKL", "sequence-type": "addgene-full", "addgene_id": "186720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbrc.2018.06.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29885839" + ], "kit": null, "att_sites": [ "attL1", @@ -158349,7 +167899,10 @@ "plasmid_name": "pLEX307-mFzd7", "sequence-type": "addgene-full", "addgene_id": "102869", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "att_sites": [ "attB1", @@ -158406,7 +167959,6 @@ "plasmid_name": "pDEST26-Nluc-hTLR4", "sequence-type": "addgene-full", "addgene_id": "197641", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -158454,7 +168006,10 @@ "plasmid_name": "pCM-HA-Gas1", "sequence-type": "depositor-full", "addgene_id": "38313", - "references": [], + "references": [ + "https://doi.org/10.1021/cb300235m", + "https://www.ncbi.nlm.nih.gov/pubmed/22724584" + ], "kit": null, "att_sites": [ "attB1", @@ -158502,7 +168057,10 @@ "plasmid_name": "pAG425GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14250", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -158561,7 +168119,6 @@ "plasmid_name": "pDONR221-psmg1", "sequence-type": "addgene-full", "addgene_id": "192723", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -158592,7 +168149,10 @@ "plasmid_name": "pEX-SP-YFP-STIM1(23-685)", "sequence-type": "addgene-full", "addgene_id": "18857", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2005.05.055", + "https://www.ncbi.nlm.nih.gov/pubmed/16005298" + ], "kit": null, "att_sites": [ "attB1", @@ -158635,7 +168195,10 @@ "plasmid_name": "pDONR221_SLC26A6", "sequence-type": "addgene-full", "addgene_id": "132056", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -158666,7 +168229,10 @@ "plasmid_name": "pPB-cT3G-cERP2-CEBPD", "sequence-type": "addgene-full", "addgene_id": "192897", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -158712,7 +168278,10 @@ "plasmid_name": "PTPRA-SHC", "sequence-type": "addgene-full", "addgene_id": "139611", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -158756,7 +168325,10 @@ "plasmid_name": "pDL141", "sequence-type": "addgene-full", "addgene_id": "175918", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -158780,7 +168352,10 @@ "plasmid_name": "pDONR223_BRD4_WT", "sequence-type": "addgene-full", "addgene_id": "82323", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -158809,7 +168384,10 @@ "plasmid_name": "pENTR-R4R3-mRuby-C", "sequence-type": "addgene-full", "addgene_id": "113755", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -158821,7 +168399,10 @@ "plasmid_name": "pLCS108", "sequence-type": "addgene-full", "addgene_id": "209329", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -158864,7 +168445,10 @@ "plasmid_name": "pDONR223-GK", "sequence-type": "addgene-full", "addgene_id": "23872", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -158896,7 +168480,10 @@ "plasmid_name": "NCH1ec", "sequence-type": "addgene-full", "addgene_id": "131016", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "att_sites": [ "attL1", @@ -158930,7 +168517,10 @@ "plasmid_name": "PCBP3_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176958", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -158982,7 +168572,9 @@ "plasmid_name": "pMpGWB106", "sequence-type": "depositor-full", "addgene_id": "68560", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -159033,7 +168625,10 @@ "plasmid_name": "pInducer 21-3xFlag-hMEFV-\u0394PYD", "sequence-type": "addgene-full", "addgene_id": "195478", - "references": [], + "references": [ + "https://doi.org/10.1038/s41419-023-05745-9", + "https://www.ncbi.nlm.nih.gov/pubmed/36966139" + ], "kit": null, "att_sites": [ "attB1", @@ -159090,7 +168685,10 @@ "plasmid_name": "pCSJ182", "sequence-type": "addgene-full", "addgene_id": "159723", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aal3655", + "https://www.ncbi.nlm.nih.gov/pubmed/28126757" + ], "kit": null, "att_sites": [ "attB1", @@ -159131,7 +168729,10 @@ "plasmid_name": "MAC_N_PAX7", "sequence-type": "addgene-full", "addgene_id": "187750", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -159177,7 +168778,10 @@ "plasmid_name": "pD765 HMGCR 3'UTR", "sequence-type": "addgene-full", "addgene_id": "105766", - "references": [], + "references": [ + "https://doi.org/10.1038/srep40813", + "https://www.ncbi.nlm.nih.gov/pubmed/28102325" + ], "kit": null, "att_sites": [ "attB1", @@ -159213,7 +168817,10 @@ "plasmid_name": "pDONR223_HRH4_p.S170L", "sequence-type": "addgene-full", "addgene_id": "81363", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -159245,7 +168852,10 @@ "plasmid_name": "GFP-JIP3", "sequence-type": "addgene-full", "addgene_id": "164624", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "att_sites": [ "attB1", @@ -159297,7 +168907,10 @@ "plasmid_name": "pENTR223-BFLF2", "sequence-type": "addgene-full", "addgene_id": "195798", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -159326,7 +168939,10 @@ "plasmid_name": "TTC3_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53851", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53851.addgene-full.gb" }, @@ -159335,7 +168951,10 @@ "plasmid_name": "pHAGE-PTEN-Y27D", "sequence-type": "addgene-full", "addgene_id": "116637", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -159385,7 +169004,10 @@ "plasmid_name": "pENTR-L5-CMV-R3", "sequence-type": "addgene-full", "addgene_id": "141035", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL5", @@ -159411,7 +169033,6 @@ "plasmid_name": "R777-E165 Hs.PIK3CB", "sequence-type": "depositor-full", "addgene_id": "70449", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -159423,7 +169044,10 @@ "plasmid_name": "pDONR221_SLC31A2", "sequence-type": "addgene-full", "addgene_id": "132124", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -159454,7 +169078,9 @@ "plasmid_name": "pcDNA5-miniTurbo-TAF5-\u2206ex8", "sequence-type": "addgene-full", "addgene_id": "209052", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attB1", @@ -159498,7 +169124,10 @@ "plasmid_name": "pLX311 Luciferase", "sequence-type": "addgene-full", "addgene_id": "117735", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -159558,7 +169187,10 @@ "plasmid_name": "pDONR223_SGK3_WT", "sequence-type": "addgene-full", "addgene_id": "82251", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -159587,7 +169219,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0391-luc2", "sequence-type": "addgene-full", "addgene_id": "214626", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -159631,7 +169266,6 @@ "plasmid_name": "pHAGE-APEX2-nDEST", "sequence-type": "addgene-full", "addgene_id": "214992", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -159687,7 +169321,10 @@ "plasmid_name": "BirA-Myc_N_MYOD1", "sequence-type": "addgene-full", "addgene_id": "167716", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167716.addgene-full.gb" }, @@ -159696,7 +169333,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NI_G1333-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171725", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attL1", @@ -159732,7 +169372,6 @@ "plasmid_name": "BRAF - R726C in pENTR", "sequence-type": "addgene-full", "addgene_id": "216616", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -159762,7 +169401,10 @@ "plasmid_name": "pCMB-ACTLg", "sequence-type": "depositor-full", "addgene_id": "61195", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -159810,7 +169452,6 @@ "plasmid_name": "Hs.KRAS4b M72C", "sequence-type": "depositor-full", "addgene_id": "83160", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -159836,7 +169477,10 @@ "plasmid_name": "pBp-FGFR2c-WT", "sequence-type": "addgene-full", "addgene_id": "45699", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-12-3950", + "https://www.ncbi.nlm.nih.gov/pubmed/23786770" + ], "kit": null, "att_sites": [ "attB1", @@ -159868,7 +169512,10 @@ "plasmid_name": "pAG423GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14149", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -159929,7 +169576,10 @@ "plasmid_name": "pMARO", "sequence-type": "addgene-full", "addgene_id": "178086", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2021.102608", + "https://www.ncbi.nlm.nih.gov/pubmed/34801582" + ], "kit": null, "att_sites": [ "attL1", @@ -159954,7 +169604,10 @@ "plasmid_name": "pHAGE-PRKD1", "sequence-type": "addgene-full", "addgene_id": "116778", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -160004,7 +169657,9 @@ "plasmid_name": "pENTR4 CDS A. thaliana MAMI", "sequence-type": "addgene-full", "addgene_id": "209186", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.09.25.558804" + ], "kit": null, "att_sites": [ "attL1", @@ -160029,7 +169684,10 @@ "plasmid_name": "pCM5.32", "sequence-type": "depositor-full", "addgene_id": "19397", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -160060,7 +169718,10 @@ "plasmid_name": "pDRM56 tet-AR(1-707)C617Y", "sequence-type": "addgene-full", "addgene_id": "183504", - "references": [], + "references": [ + "https://doi.org/10.1038/s41591-020-01168-7", + "https://www.ncbi.nlm.nih.gov/pubmed/33462444" + ], "kit": null, "att_sites": [ "attB1", @@ -160115,7 +169776,10 @@ "plasmid_name": "p6599 MSCV-IP N-HAonly FOSL1", "sequence-type": "addgene-full", "addgene_id": "34897", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1116776109", + "https://www.ncbi.nlm.nih.gov/pubmed/22232672" + ], "kit": null, "file": "data/addgene_plasmids/34897.addgene-full.gb" }, @@ -160124,7 +169788,6 @@ "plasmid_name": "pSLIK CXADR-V5 hygro", "sequence-type": "addgene-full", "addgene_id": "220362", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -160190,7 +169853,10 @@ "plasmid_name": "pHAGE-PIK3CA-G451V", "sequence-type": "addgene-full", "addgene_id": "116498", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -160244,7 +169910,6 @@ "plasmid_name": "pENTR-tTAF2", "sequence-type": "addgene-full", "addgene_id": "139557", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -160277,7 +169942,10 @@ "plasmid_name": "pBullet-end-c", "sequence-type": "depositor-full", "addgene_id": "53074", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -160314,7 +169982,10 @@ "plasmid_name": "pDONR221-NIPA1", "sequence-type": "addgene-full", "addgene_id": "132310", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -160345,7 +170016,6 @@ "plasmid_name": "p667-UBC-GFP-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135242", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -160415,7 +170085,10 @@ "plasmid_name": "gSCPL35-mRFP", "sequence-type": "addgene-full", "addgene_id": "181960", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.360", + "https://www.ncbi.nlm.nih.gov/pubmed/34877448" + ], "kit": null, "att_sites": [ "attB1", @@ -160458,7 +170131,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-UD-S32", "sequence-type": "addgene-full", "addgene_id": "140303", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -160510,7 +170186,6 @@ "plasmid_name": "IDG_KCNMB4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161692", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -160569,7 +170244,10 @@ "plasmid_name": "pMuLE ENTR SV40 mCherry L3-L2", "sequence-type": "depositor-full", "addgene_id": "62150", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -160606,7 +170284,6 @@ "plasmid_name": "pX458-Ef1a-dCas9-VPR-H2B-GFP (CRISPRa)", "sequence-type": "addgene-full", "addgene_id": "175571", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -160653,7 +170330,6 @@ "plasmid_name": "R777-E123 Hs.MAP2K2", "sequence-type": "depositor-full", "addgene_id": "70407", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -160681,7 +170357,10 @@ "plasmid_name": "MAC-TOP3B", "sequence-type": "addgene-full", "addgene_id": "172423", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -160727,7 +170406,10 @@ "plasmid_name": "pCFJ1137", "sequence-type": "depositor-full", "addgene_id": "84827", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.072", + "https://www.ncbi.nlm.nih.gov/pubmed/27374334" + ], "kit": null, "att_sites": [ "attB1", @@ -160762,7 +170444,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS2", "sequence-type": "depositor-full", "addgene_id": "59390", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.045005.114", + "https://www.ncbi.nlm.nih.gov/pubmed/24860013" + ], "kit": null, "att_sites": [ "attB1", @@ -160807,7 +170492,6 @@ "plasmid_name": "pAM-35s-CBL9-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102400", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -160840,7 +170524,6 @@ "plasmid_name": "pENTR3cDual-Fray", "sequence-type": "addgene-full", "addgene_id": "203977", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -160864,7 +170547,10 @@ "plasmid_name": "pLX304 GFP", "sequence-type": "addgene-full", "addgene_id": "193687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -160927,7 +170613,10 @@ "plasmid_name": "pDL215", "sequence-type": "addgene-full", "addgene_id": "175925", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -160951,7 +170640,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND R394E", "sequence-type": "addgene-full", "addgene_id": "169971", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -160982,7 +170674,10 @@ "plasmid_name": "pAG303GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14278", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -161040,7 +170735,10 @@ "plasmid_name": "UQCRB_pLX307", "sequence-type": "addgene-full", "addgene_id": "98381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -161099,7 +170797,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF7B", "sequence-type": "addgene-full", "addgene_id": "154422", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -161129,7 +170830,10 @@ "plasmid_name": "p3E-mScarlet", "sequence-type": "addgene-full", "addgene_id": "140875", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -161160,7 +170864,10 @@ "plasmid_name": "pEXP(FLAG/HA-NSP1-WT)", "sequence-type": "addgene-full", "addgene_id": "188781", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0297262", + "https://www.ncbi.nlm.nih.gov/pubmed/38277395" + ], "kit": null, "att_sites": [ "attB1", @@ -161205,7 +170912,6 @@ "plasmid_name": "Mouse-Dysferlin-Transcript-Variant2", "sequence-type": "depositor-full", "addgene_id": "60215", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -161237,7 +170943,10 @@ "plasmid_name": "JDW 295 (pDONR-Dll4-F2-ETS#2-WT-8X)", "sequence-type": "addgene-full", "addgene_id": "156412", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attL1", @@ -161268,7 +170977,10 @@ "plasmid_name": "pME-mVenus-NS", "sequence-type": "addgene-full", "addgene_id": "80497", - "references": [], + "references": [ + "https://doi.org/10.1080/21592799.2017.1301151", + "https://www.ncbi.nlm.nih.gov/pubmed/28396820" + ], "kit": null, "att_sites": [ "attL1", @@ -161304,7 +171016,9 @@ "plasmid_name": "pLV-SFFVp-CRISPRoffv2.1-IRES-BlastR", "sequence-type": "addgene-full", "addgene_id": "207181", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "att_sites": [ "attB1", @@ -161355,7 +171069,10 @@ "plasmid_name": "MLKS2exp", "sequence-type": "addgene-full", "addgene_id": "130856", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "att_sites": [ "attB1", @@ -161391,7 +171108,10 @@ "plasmid_name": "pDONR223_ZBTB24_p.G693S", "sequence-type": "addgene-full", "addgene_id": "82868", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -161420,7 +171140,10 @@ "plasmid_name": "pDONR223_RB1_p.R451H", "sequence-type": "addgene-full", "addgene_id": "81595", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -161432,7 +171155,10 @@ "plasmid_name": "hu\u03b2B1cry:mAppleCAAX", "sequence-type": "addgene-full", "addgene_id": "122451", - "references": [], + "references": [ + "https://doi.org/10.3791/59528", + "https://www.ncbi.nlm.nih.gov/pubmed/31107462" + ], "kit": null, "att_sites": [ "attB1", @@ -161482,7 +171208,10 @@ "plasmid_name": "pEBTet-SNAP-Centrin3", "sequence-type": "addgene-full", "addgene_id": "136806", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -161529,7 +171258,10 @@ "plasmid_name": "p3E-rab27a", "sequence-type": "addgene-full", "addgene_id": "109685", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109685.addgene-full.gb" }, @@ -161538,7 +171270,6 @@ "plasmid_name": "pLenti6.3/pr-Membrane", "sequence-type": "addgene-full", "addgene_id": "120835", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -161597,7 +171328,10 @@ "plasmid_name": "pDONR221_MTCH2", "sequence-type": "addgene-full", "addgene_id": "131954", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -161628,7 +171362,10 @@ "plasmid_name": "MiniCoopR mitfa:EGFP", "sequence-type": "addgene-full", "addgene_id": "118850", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -161670,7 +171407,10 @@ "plasmid_name": "pDONR223-ZNF626", "sequence-type": "addgene-full", "addgene_id": "88002", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -161699,7 +171439,10 @@ "plasmid_name": "TFORF3339", "sequence-type": "addgene-full", "addgene_id": "144815", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -161759,7 +171502,10 @@ "plasmid_name": "35S-GWY-GAL4BD/pAM", "sequence-type": "addgene-full", "addgene_id": "201231", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16234", + "https://www.ncbi.nlm.nih.gov/pubmed/37323061" + ], "kit": null, "att_sites": [ "attR1", @@ -161796,7 +171542,10 @@ "plasmid_name": "p3E-EHD1a-dEH", "sequence-type": "addgene-full", "addgene_id": "109565", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -161827,7 +171576,10 @@ "plasmid_name": "TFORF2965", "sequence-type": "addgene-full", "addgene_id": "144441", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -161887,7 +171639,6 @@ "plasmid_name": "p2K7-RIP-Tomato-EFs-Tk::Sh", "sequence-type": "addgene-full", "addgene_id": "114311", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -161945,7 +171696,10 @@ "plasmid_name": "pENTR-R4R3-3xmEGFP-C", "sequence-type": "depositor-full", "addgene_id": "113751", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -161980,7 +171734,10 @@ "plasmid_name": "pDONR223_VHL_p.S111N", "sequence-type": "addgene-full", "addgene_id": "81675", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -162012,7 +171769,10 @@ "plasmid_name": "5'-3xFLAG Chtop-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212080", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -162052,7 +171812,10 @@ "plasmid_name": "pDONR221-SLC36A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161250", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -162083,7 +171846,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir129-2-2", "sequence-type": "depositor-full", "addgene_id": "46728", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -162133,7 +171899,10 @@ "plasmid_name": "actc1b-actn2-mKate2", "sequence-type": "addgene-full", "addgene_id": "109751", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -162173,7 +171942,10 @@ "plasmid_name": "TFORF3199", "sequence-type": "addgene-full", "addgene_id": "144675", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -162233,7 +172005,10 @@ "plasmid_name": "pMP71-hCD155", "sequence-type": "addgene-full", "addgene_id": "118630", - "references": [], + "references": [ + "https://doi.org/10.1158/2326-6066.CIR-18-0351", + "https://www.ncbi.nlm.nih.gov/pubmed/30659053" + ], "kit": null, "att_sites": [ "attB1", @@ -162269,7 +172044,10 @@ "plasmid_name": "pDONR221_DIRC2", "sequence-type": "addgene-full", "addgene_id": "131880", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -162300,7 +172078,6 @@ "plasmid_name": "R777-E301 Hs.RPTOR", "sequence-type": "depositor-full", "addgene_id": "70585", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -162328,7 +172105,10 @@ "plasmid_name": "pEN12A-P1", "sequence-type": "depositor-full", "addgene_id": "27366", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "att_sites": [ "attL1", @@ -162355,7 +172135,9 @@ "plasmid_name": "pDONR221-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166136", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attL1", @@ -162387,7 +172169,10 @@ "plasmid_name": "pDONR221-SLC15A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161064", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -162418,7 +172203,9 @@ "plasmid_name": "pMpGWB323", "sequence-type": "depositor-full", "addgene_id": "68651", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -162466,7 +172253,10 @@ "plasmid_name": "pDONR223_OMA1_p.P177S", "sequence-type": "addgene-full", "addgene_id": "81441", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -162498,7 +172288,10 @@ "plasmid_name": "pME-nlsGal80(opt)", "sequence-type": "depositor-full", "addgene_id": "51618", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.22734", + "https://www.ncbi.nlm.nih.gov/pubmed/21905164" + ], "kit": null, "att_sites": [ "attL1", @@ -162530,7 +172323,10 @@ "plasmid_name": "pDONR223_DNASE2_WT", "sequence-type": "addgene-full", "addgene_id": "81815", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -162562,7 +172358,10 @@ "plasmid_name": "pDONR221-SLC5A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161384", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -162593,7 +172392,10 @@ "plasmid_name": "pAAV2-DEST(r)", "sequence-type": "addgene-full", "addgene_id": "190238", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "att_sites": [ "attR1", @@ -162627,7 +172429,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 ORF3A_nostop", "sequence-type": "addgene-full", "addgene_id": "149319", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -162651,7 +172456,10 @@ "plasmid_name": "pHAGE-ARAF-S217F", "sequence-type": "addgene-full", "addgene_id": "116115", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -162701,7 +172509,6 @@ "plasmid_name": "pPV477", "sequence-type": "depositor-full", "addgene_id": "42930", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -162734,7 +172541,10 @@ "plasmid_name": "pMOS030: ratiometric pHluorin (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163054", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -162796,7 +172606,10 @@ "plasmid_name": "TFORF3119", "sequence-type": "addgene-full", "addgene_id": "144595", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -162856,7 +172669,10 @@ "plasmid_name": "pLEX307-HCoV-NL63-3CL", "sequence-type": "addgene-full", "addgene_id": "160286", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -162916,7 +172732,10 @@ "plasmid_name": "pTKan-p35S::Csy4-pNOS::cogGFP (C132, JBEI-15898)", "sequence-type": "addgene-full", "addgene_id": "110145", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.6b00295", + "https://www.ncbi.nlm.nih.gov/pubmed/28094975" + ], "kit": null, "att_sites": [ "attB1", @@ -162973,7 +172792,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK17B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189878", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -163039,7 +172857,9 @@ "plasmid_name": "bactin:GFP-PCNA", "sequence-type": "depositor-full", "addgene_id": "105979", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30120238" + ], "kit": null, "att_sites": [ "attB1", @@ -163088,7 +172908,10 @@ "plasmid_name": "A1-LCD-6R+6K", "sequence-type": "addgene-full", "addgene_id": "178670", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -163123,7 +172946,10 @@ "plasmid_name": "Ash1", "sequence-type": "addgene-full", "addgene_id": "169711", - "references": [], + "references": [ + "https://doi.org/10.1021/jacs.6b10272", + "https://www.ncbi.nlm.nih.gov/pubmed/27807972" + ], "kit": null, "att_sites": [ "attB1", @@ -163158,7 +172984,10 @@ "plasmid_name": "pDONR223_MYC_WT", "sequence-type": "addgene-full", "addgene_id": "82927", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -163188,7 +173017,10 @@ "plasmid_name": "IX907: pMVP (L3-L2) 3x epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121757", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -163223,7 +173055,10 @@ "plasmid_name": "p6351 MSCV-CMV-CMV-Flag-HA-NSD3", "sequence-type": "addgene-full", "addgene_id": "31357", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.01341-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21555454" + ], "kit": null, "att_sites": [ "attB1", @@ -163272,7 +173107,9 @@ "plasmid_name": "p3E-nlsGFP pA", "sequence-type": "depositor-full", "addgene_id": "80814", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -163312,7 +173149,9 @@ "plasmid_name": "pME-H2B-V5-n2StayGoldC4 (JDW 1354)", "sequence-type": "addgene-full", "addgene_id": "224486", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -163346,7 +173185,10 @@ "plasmid_name": "pGWB554", "sequence-type": "depositor-full", "addgene_id": "74884", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -163396,7 +173238,10 @@ "plasmid_name": "pDONR223 HCoV-229E NSP15_stop", "sequence-type": "addgene-full", "addgene_id": "168761", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -163425,7 +173270,10 @@ "plasmid_name": "pENTR1A dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134724", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "att_sites": [ "attL1", @@ -163449,7 +173297,10 @@ "plasmid_name": "pGWT35S-VC155", "sequence-type": "addgene-full", "addgene_id": "194051", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "att_sites": [ "attB1", @@ -163493,7 +173344,10 @@ "plasmid_name": "pMuLE Lenti Dest Neo", "sequence-type": "depositor-full", "addgene_id": "62178", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR1", @@ -163555,7 +173409,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mClover3-RfA", "sequence-type": "addgene-full", "addgene_id": "186379", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -163601,7 +173454,10 @@ "plasmid_name": "pMpGWB337", "sequence-type": "depositor-full", "addgene_id": "68061", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcv102", + "https://www.ncbi.nlm.nih.gov/pubmed/26148498" + ], "kit": null, "att_sites": [ "attB1", @@ -163655,7 +173511,10 @@ "plasmid_name": "pGW-FL-V5", "sequence-type": "depositor-full", "addgene_id": "78858", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "att_sites": [ "attR1", @@ -163712,7 +173571,10 @@ "plasmid_name": "pHAGE-FGFR3-S351C", "sequence-type": "addgene-full", "addgene_id": "116387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -163766,7 +173628,10 @@ "plasmid_name": "TFORF3231", "sequence-type": "addgene-full", "addgene_id": "144707", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -163826,7 +173691,10 @@ "plasmid_name": "actc1b-mKate2-rab33a", "sequence-type": "addgene-full", "addgene_id": "109623", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -163868,7 +173736,10 @@ "plasmid_name": "pDONR223_PIK3CB_p.A1048V", "sequence-type": "addgene-full", "addgene_id": "81533", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -163902,7 +173773,10 @@ "plasmid_name": "pAG413GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14406", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -163963,7 +173837,9 @@ "plasmid_name": "Ttx-3-mCherry-SL2-Post-SPHERE-SF-iGluSnFR", "sequence-type": "addgene-full", "addgene_id": "187100", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.04.03.486903" + ], "kit": null, "att_sites": [ "attB1", @@ -163997,7 +173873,10 @@ "plasmid_name": "pDONR221-SLC10A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161116", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -164028,7 +173907,10 @@ "plasmid_name": "pME-EGFP-P2A-APEX2-NS", "sequence-type": "addgene-full", "addgene_id": "108895", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "att_sites": [ "attL1", @@ -164066,7 +173948,6 @@ "plasmid_name": "R777-E130 Hs.MDM2-nostop", "sequence-type": "addgene-full", "addgene_id": "70414", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -164094,7 +173975,10 @@ "plasmid_name": "pDONR221-HOXB3", "sequence-type": "depositor-full", "addgene_id": "101478", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -164125,7 +174009,10 @@ "plasmid_name": "pQLinkHD-SYNZIP3", "sequence-type": "depositor-full", "addgene_id": "80659", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "att_sites": [ "attB1", @@ -164161,7 +174048,10 @@ "plasmid_name": "pDONR223_EGFR_p.773_774insH", "sequence-type": "addgene-full", "addgene_id": "82855", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -164191,7 +174081,10 @@ "plasmid_name": "pAG305GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14161", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -164250,7 +174143,10 @@ "plasmid_name": "TFORF3352", "sequence-type": "addgene-full", "addgene_id": "144828", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -164310,7 +174206,10 @@ "plasmid_name": "pDONR221_SLC25A31", "sequence-type": "addgene-full", "addgene_id": "131969", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -164341,7 +174240,6 @@ "plasmid_name": "Hs.KRAS4b R68S", "sequence-type": "depositor-full", "addgene_id": "83148", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -164367,7 +174265,10 @@ "plasmid_name": "pCZGY1534 tomm-20N::miniSOG in pENTR[1-2]", "sequence-type": "depositor-full", "addgene_id": "66753", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1204096109", + "https://www.ncbi.nlm.nih.gov/pubmed/22532663" + ], "kit": null, "att_sites": [ "attL1", @@ -164399,7 +174300,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp2", "sequence-type": "depositor-full", "addgene_id": "168968", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -164428,7 +174332,10 @@ "plasmid_name": "pME-GalT", "sequence-type": "addgene-full", "addgene_id": "109558", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -164459,7 +174366,10 @@ "plasmid_name": "pDONR221-SLC13A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161087", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -164490,7 +174400,10 @@ "plasmid_name": "Lenti-EFS-EGFP-T2A-Bsd", "sequence-type": "addgene-full", "addgene_id": "193198", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.111990", + "https://www.ncbi.nlm.nih.gov/pubmed/36640300" + ], "kit": null, "att_sites": [ "attB1", @@ -164552,7 +174465,10 @@ "plasmid_name": "pENTR-D-kcnj15", "sequence-type": "addgene-full", "addgene_id": "173145", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -164583,7 +174499,10 @@ "plasmid_name": "COPE_pLX307", "sequence-type": "addgene-full", "addgene_id": "98327", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -164643,7 +174562,9 @@ "plasmid_name": "pDRf1-4CL5-AtSCT (JBEI-11557)", "sequence-type": "addgene-full", "addgene_id": "87937", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27871334" + ], "kit": null, "att_sites": [ "attB1", @@ -164687,7 +174608,10 @@ "plasmid_name": "pDONR223_HAPLN1_p.P233H", "sequence-type": "addgene-full", "addgene_id": "81648", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -164719,7 +174643,9 @@ "plasmid_name": "p5E-gfap", "sequence-type": "addgene-full", "addgene_id": "82401", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL4", @@ -164752,7 +174678,10 @@ "plasmid_name": "pPN458", "sequence-type": "addgene-full", "addgene_id": "137876", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "att_sites": [ "attB1", @@ -164807,7 +174736,10 @@ "plasmid_name": "pENTR-R4r-EYFP-R3r", "sequence-type": "depositor-full", "addgene_id": "32412", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attR3", @@ -164842,7 +174774,10 @@ "plasmid_name": "pCSCherryN5icd", "sequence-type": "depositor-full", "addgene_id": "22456", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attB1", @@ -164886,7 +174821,10 @@ "plasmid_name": "TFORF3172", "sequence-type": "addgene-full", "addgene_id": "144648", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -164946,7 +174884,10 @@ "plasmid_name": "dpYPQ230-D156R-CBE1", "sequence-type": "addgene-full", "addgene_id": "195367", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "att_sites": [ "attL1", @@ -164980,7 +174921,10 @@ "plasmid_name": "pMuLE ENTR U6 n.s shRNA L1-L4", "sequence-type": "depositor-full", "addgene_id": "62136", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -165014,7 +174958,10 @@ "plasmid_name": "pLX_HA-C7orf26v2", "sequence-type": "addgene-full", "addgene_id": "178536", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.12.005", + "https://www.ncbi.nlm.nih.gov/pubmed/35085500" + ], "kit": null, "att_sites": [ "attB1", @@ -165074,7 +175021,10 @@ "plasmid_name": "pDONR223_SPP1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82981", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -165103,7 +175053,10 @@ "plasmid_name": "pDONR221-MFSD2A_STOP", "sequence-type": "addgene-full", "addgene_id": "161059", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -165134,7 +175087,10 @@ "plasmid_name": "JC101: pMVP/Ad/PK-DEST", "sequence-type": "addgene-full", "addgene_id": "121845", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -165166,7 +175122,6 @@ "plasmid_name": "R777-E177 Hs.PIK3R4", "sequence-type": "depositor-full", "addgene_id": "70461", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -165194,7 +175149,10 @@ "plasmid_name": "pGWB12_TtNAM-B1", "sequence-type": "addgene-full", "addgene_id": "124573", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "att_sites": [ "attB1", @@ -165239,7 +175197,10 @@ "plasmid_name": "pDONR223_SYCP1_WT", "sequence-type": "addgene-full", "addgene_id": "81828", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -165271,7 +175232,10 @@ "plasmid_name": "pCZGY2141", "sequence-type": "addgene-full", "addgene_id": "87757", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attB1", @@ -165312,7 +175276,10 @@ "plasmid_name": "pUBQ10:LYK5_TM-3xHA", "sequence-type": "addgene-full", "addgene_id": "202191", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "file": "data/addgene_plasmids/202191.addgene-full.gb" }, @@ -165321,7 +175288,10 @@ "plasmid_name": "pMOS017E: Entry vector for: ratiometric pHluorin (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163069", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -165355,7 +175325,10 @@ "plasmid_name": "p16 nlsGPS1-NR", "sequence-type": "addgene-full", "addgene_id": "101082", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-017-0021-9", + "https://www.ncbi.nlm.nih.gov/pubmed/28970478" + ], "kit": null, "att_sites": [ "attB1", @@ -165403,7 +175376,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 ORF7A_nostop", "sequence-type": "addgene-full", "addgene_id": "149324", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -165427,7 +175403,10 @@ "plasmid_name": "pHAGE-BRAF-A320T", "sequence-type": "addgene-full", "addgene_id": "116128", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -165482,7 +175461,10 @@ "plasmid_name": "TFORF3057", "sequence-type": "addgene-full", "addgene_id": "144533", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -165542,7 +175524,10 @@ "plasmid_name": "pK7WGF2::hCas9", "sequence-type": "depositor-full", "addgene_id": "46965", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt.2655", + "https://www.ncbi.nlm.nih.gov/pubmed/23929340" + ], "kit": null, "file": "data/addgene_plasmids/46965.depositor-full.gb" }, @@ -165551,7 +175536,10 @@ "plasmid_name": "CIR1", "sequence-type": "addgene-full", "addgene_id": "155452", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -165594,7 +175582,10 @@ "plasmid_name": "pEZYHb", "sequence-type": "depositor-full", "addgene_id": "18669", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "att_sites": [ "attR1", @@ -165633,7 +175624,9 @@ "plasmid_name": "pGWB402SC", "sequence-type": "addgene-full", "addgene_id": "224552", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.14.603419" + ], "kit": null, "att_sites": [ "attR1", @@ -165675,7 +175668,10 @@ "plasmid_name": "pEN_TTmiRC2_p53DD", "sequence-type": "addgene-full", "addgene_id": "136520", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attL1", @@ -165703,7 +175699,10 @@ "plasmid_name": "pDONR221-SLC48A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161322", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -165734,7 +175733,10 @@ "plasmid_name": "FoRC.PRa", "sequence-type": "addgene-full", "addgene_id": "84585", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22984", + "https://www.ncbi.nlm.nih.gov/pubmed/27696669" + ], "kit": null, "att_sites": [ "attP1", @@ -165779,7 +175781,10 @@ "plasmid_name": "pDONR223_BRAF_p.G466A", "sequence-type": "addgene-full", "addgene_id": "81707", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -165812,7 +175817,10 @@ "plasmid_name": "pLX304-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176288", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "att_sites": [ "attR1", @@ -165883,7 +175891,6 @@ "plasmid_name": "pENTR-ABCC1_K684I_STOP", "sequence-type": "addgene-full", "addgene_id": "221430", - "references": [], "kit": null, "file": "data/addgene_plasmids/221430.addgene-full.gb" }, @@ -165892,7 +175899,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir16-1.3", "sequence-type": "depositor-full", "addgene_id": "46682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -165942,7 +175952,9 @@ "plasmid_name": "pDONR221-MRPS18b", "sequence-type": "addgene-full", "addgene_id": "166190", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -165973,7 +175985,10 @@ "plasmid_name": "TFORF3491", "sequence-type": "addgene-full", "addgene_id": "144967", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -166033,7 +176048,10 @@ "plasmid_name": "pHAGE-EGFR-G719A", "sequence-type": "addgene-full", "addgene_id": "116253", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -166087,7 +176105,10 @@ "plasmid_name": "pHAGE-TBK1-C-FLAG-HA", "sequence-type": "addgene-full", "addgene_id": "131792", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.08.085", + "https://www.ncbi.nlm.nih.gov/pubmed/31577952" + ], "kit": null, "att_sites": [ "attB1", @@ -166138,7 +176159,10 @@ "plasmid_name": "p8220 MSCV-Neo C-HA 18E7 R84S", "sequence-type": "addgene-full", "addgene_id": "163312", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "att_sites": [ "attB1", @@ -166183,7 +176207,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP14_stop", "sequence-type": "addgene-full", "addgene_id": "168555", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -166212,7 +176239,10 @@ "plasmid_name": "pAFMW-Nbr[C399-625 CM]", "sequence-type": "addgene-full", "addgene_id": "188588", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -166242,7 +176272,6 @@ "plasmid_name": "R777-E271 Hs.RB1", "sequence-type": "depositor-full", "addgene_id": "70555", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -166270,7 +176299,10 @@ "plasmid_name": "pDONR223-PFKFB3", "sequence-type": "addgene-full", "addgene_id": "23668", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -166302,7 +176334,10 @@ "plasmid_name": "pHAGE-PIK3CA-E542K", "sequence-type": "addgene-full", "addgene_id": "116479", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -166352,7 +176387,9 @@ "plasmid_name": "pMpGWB416", "sequence-type": "depositor-full", "addgene_id": "68681", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -166403,7 +176440,10 @@ "plasmid_name": "pDONR223_MYC_WT", "sequence-type": "addgene-full", "addgene_id": "82084", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -166436,7 +176476,10 @@ "plasmid_name": "TU#1412_tiam-1_cDNA", "sequence-type": "addgene-full", "addgene_id": "82364", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1607179113", + "https://www.ncbi.nlm.nih.gov/pubmed/27274054" + ], "kit": null, "file": "data/addgene_plasmids/82364.addgene-full.gb" }, @@ -166445,7 +176488,10 @@ "plasmid_name": "pVL-FLAG/His PALI1", "sequence-type": "addgene-full", "addgene_id": "114449", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "file": "data/addgene_plasmids/114449.addgene-full.gb" }, @@ -166454,7 +176500,10 @@ "plasmid_name": "pCK069 desmaMCS:minprom_mApple,exorh:EGFP", "sequence-type": "addgene-full", "addgene_id": "195982", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attB1", @@ -166499,7 +176548,10 @@ "plasmid_name": "pHAGE-TGFB1", "sequence-type": "addgene-full", "addgene_id": "116799", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -166549,7 +176601,10 @@ "plasmid_name": "pCW-Flag-CtIP", "sequence-type": "addgene-full", "addgene_id": "71108", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1", @@ -166604,7 +176659,10 @@ "plasmid_name": "pENTR221-NFAT5", "sequence-type": "addgene-full", "addgene_id": "79506", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -166638,7 +176696,10 @@ "plasmid_name": "pDONR221_SLC22A15", "sequence-type": "addgene-full", "addgene_id": "132011", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -166669,7 +176730,10 @@ "plasmid_name": "pHAGE-TGFBR2-R528S", "sequence-type": "addgene-full", "addgene_id": "116702", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -166720,7 +176784,10 @@ "plasmid_name": "pFUSE-B_P2rP4", "sequence-type": "addgene-full", "addgene_id": "97185", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-2745", + "https://www.ncbi.nlm.nih.gov/pubmed/28512244" + ], "kit": null, "att_sites": [ "attP2", @@ -166754,7 +176821,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term NPAT", "sequence-type": "addgene-full", "addgene_id": "187585", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -166798,7 +176868,10 @@ "plasmid_name": "pDONR221-ZNF66", "sequence-type": "depositor-full", "addgene_id": "101502", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -166829,7 +176902,6 @@ "plasmid_name": "p667-UBC-hcRed-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135238", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -166895,7 +176967,6 @@ "plasmid_name": "IDG_GABRG1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161673", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -166954,7 +177025,10 @@ "plasmid_name": "pDONR223_NFKBIA_WT", "sequence-type": "addgene-full", "addgene_id": "81256", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -166983,7 +177057,10 @@ "plasmid_name": "pDONR221 Nop4", "sequence-type": "depositor-full", "addgene_id": "63767", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -167014,7 +177091,10 @@ "plasmid_name": "pENTR223-BALF1", "sequence-type": "addgene-full", "addgene_id": "195779", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -167043,7 +177123,10 @@ "plasmid_name": "pDONR201-Eps8L2_367-496", "sequence-type": "addgene-full", "addgene_id": "196530", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attL1", @@ -167066,7 +177149,10 @@ "plasmid_name": "pDONR221-SV2B_STOP", "sequence-type": "addgene-full", "addgene_id": "161447", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -167097,7 +177183,10 @@ "plasmid_name": "pENTR4 CDS A. thaliana PARP2", "sequence-type": "addgene-full", "addgene_id": "175810", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2018.01581", + "https://www.ncbi.nlm.nih.gov/pubmed/30455710" + ], "kit": null, "att_sites": [ "attL1", @@ -167121,7 +177210,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(K206A)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128678", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -167171,7 +177263,10 @@ "plasmid_name": "pLenti myc-NL-GW", "sequence-type": "addgene-full", "addgene_id": "113454", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "att_sites": [ "attR1", @@ -167236,7 +177331,10 @@ "plasmid_name": "pHAGE-PIK3CA-R38H", "sequence-type": "addgene-full", "addgene_id": "116536", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -167290,7 +177388,10 @@ "plasmid_name": "pHAGE EF1\u03b1 dCas9-KRAB", "sequence-type": "addgene-full", "addgene_id": "50919", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.103341", + "https://www.ncbi.nlm.nih.gov/pubmed/24346702" + ], "kit": null, "att_sites": [ "attB1", @@ -167346,7 +177447,10 @@ "plasmid_name": "pDONR223-PDGFRB", "sequence-type": "addgene-full", "addgene_id": "23893", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -167379,7 +177483,10 @@ "plasmid_name": "pDONR223_C20orf72_p.P102S", "sequence-type": "addgene-full", "addgene_id": "81382", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -167411,7 +177518,10 @@ "plasmid_name": "pDONR221-W279A-short-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "195402", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "att_sites": [ "attL1", @@ -167442,7 +177552,10 @@ "plasmid_name": "pEnt L1L3 tTA-3", "sequence-type": "depositor-full", "addgene_id": "27105", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "att_sites": [ "attL1", @@ -167473,7 +177586,10 @@ "plasmid_name": "pTORGm43GW", "sequence-type": "addgene-full", "addgene_id": "112902", - "references": [], + "references": [ + "https://doi.org/10.1186/s12866-019-1642-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31775609" + ], "kit": null, "att_sites": [ "attR3", @@ -167516,7 +177632,10 @@ "plasmid_name": "pDest-676 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161888", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -167564,7 +177683,10 @@ "plasmid_name": "pDONR223_NRAS_WT", "sequence-type": "addgene-full", "addgene_id": "82150", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -167593,7 +177715,10 @@ "plasmid_name": "pDONR223_HRAS_p.Q61K", "sequence-type": "addgene-full", "addgene_id": "81319", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -167625,7 +177750,10 @@ "plasmid_name": "pENTR-E2F1", "sequence-type": "depositor-full", "addgene_id": "37141", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2008.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19081076" + ], "kit": null, "att_sites": [ "attL1", @@ -167656,7 +177784,10 @@ "plasmid_name": "pUBQ10-moxMaple-GW", "sequence-type": "addgene-full", "addgene_id": "209353", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -167696,7 +177827,10 @@ "plasmid_name": "pDONR221_SLC40A1", "sequence-type": "addgene-full", "addgene_id": "132225", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -167727,7 +177861,10 @@ "plasmid_name": "pPB-cT3G-cERP2-YBX1", "sequence-type": "addgene-full", "addgene_id": "192904", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192904.addgene-full.gb" }, @@ -167736,7 +177873,10 @@ "plasmid_name": "C413-E21: attB4-PGKp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162921", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -167771,7 +177911,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 1-376)", "sequence-type": "addgene-full", "addgene_id": "119311", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -167823,7 +177966,10 @@ "plasmid_name": "pKH145_mCherry-YIPF4 LIR mut", "sequence-type": "addgene-full", "addgene_id": "214973", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "att_sites": [ "attB1", @@ -167875,7 +178021,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS2B", "sequence-type": "addgene-full", "addgene_id": "145354", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -167910,7 +178059,10 @@ "plasmid_name": "pENTR1A-FKBP12DD C-term (w350-2)", "sequence-type": "depositor-full", "addgene_id": "17413", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -167935,7 +178087,10 @@ "plasmid_name": "mEos3-caRac1", "sequence-type": "addgene-full", "addgene_id": "92041", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1409667112", + "https://www.ncbi.nlm.nih.gov/pubmed/25561548" + ], "kit": null, "att_sites": [ "attB1", @@ -167980,7 +178135,10 @@ "plasmid_name": "pHAGE-NRAS-Q61K", "sequence-type": "addgene-full", "addgene_id": "116444", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -168035,7 +178193,10 @@ "plasmid_name": "pDONR223-PAK2", "sequence-type": "addgene-full", "addgene_id": "23655", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -168067,7 +178228,10 @@ "plasmid_name": "pAG303GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14302", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -168125,7 +178289,10 @@ "plasmid_name": "pSico-CAG-v-H-Ras-IRES-Luciferase/EGFP", "sequence-type": "depositor-full", "addgene_id": "58959", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2013.03.013", + "https://www.ncbi.nlm.nih.gov/pubmed/23523670" + ], "kit": null, "att_sites": [ "attB1", @@ -168172,7 +178339,6 @@ "plasmid_name": "pENTR CMVie-Lifeact-mCardinal L1-R5", "sequence-type": "addgene-full", "addgene_id": "84392", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -168209,7 +178375,10 @@ "plasmid_name": "pENTR/pSM2(CMV) (w57-1)", "sequence-type": "depositor-full", "addgene_id": "17389", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -168238,7 +178407,10 @@ "plasmid_name": "R989-X30-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) G13D", "sequence-type": "addgene-full", "addgene_id": "159550", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -168285,7 +178457,10 @@ "plasmid_name": "pGL193", "sequence-type": "addgene-full", "addgene_id": "180471", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13754", + "https://www.ncbi.nlm.nih.gov/pubmed/34837319" + ], "kit": null, "att_sites": [ "attL3", @@ -168319,7 +178494,10 @@ "plasmid_name": "pHAGE-CDC42BPB__RGS6", "sequence-type": "addgene-full", "addgene_id": "116810", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -168370,7 +178548,9 @@ "plasmid_name": "pMpGWB207", "sequence-type": "depositor-full", "addgene_id": "68598", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -168421,7 +178601,10 @@ "plasmid_name": "pUCIDT-attL1-Worm ABeta-attR5", "sequence-type": "addgene-full", "addgene_id": "160437", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.3856", + "https://www.ncbi.nlm.nih.gov/pubmed/33659494" + ], "kit": null, "att_sites": [ "attL1", @@ -168455,7 +178638,10 @@ "plasmid_name": "pINDUCER dCas9-TET1CD", "sequence-type": "addgene-full", "addgene_id": "101921", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-017-0002-y", + "https://www.ncbi.nlm.nih.gov/pubmed/29203910" + ], "kit": null, "att_sites": [ "attB1", @@ -168515,7 +178701,6 @@ "plasmid_name": "pLEX307-DPP4-blast", "sequence-type": "addgene-full", "addgene_id": "158452", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -168574,7 +178759,6 @@ "plasmid_name": "p663-UBC-PM-TurboID-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214455", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -168637,7 +178821,10 @@ "plasmid_name": "pRU205", "sequence-type": "addgene-full", "addgene_id": "167685", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -168687,7 +178874,6 @@ "plasmid_name": "pME tdTomato-NLS", "sequence-type": "addgene-full", "addgene_id": "135205", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -168720,7 +178906,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-34", "sequence-type": "depositor-full", "addgene_id": "46652", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -168771,7 +178960,10 @@ "plasmid_name": "pZmUBQ:AVRa1-V1", "sequence-type": "addgene-full", "addgene_id": "132357", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0502-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31666804" + ], "kit": null, "att_sites": [ "attB1", @@ -168804,7 +178996,10 @@ "plasmid_name": "pWZL Neo Myr Flag FGR", "sequence-type": "addgene-full", "addgene_id": "20487", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -168845,7 +179040,10 @@ "plasmid_name": "pCAG/ATP11C-b-HA", "sequence-type": "addgene-full", "addgene_id": "209221", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258523", + "https://www.ncbi.nlm.nih.gov/pubmed/34528675" + ], "kit": null, "att_sites": [ "attB1", @@ -168890,7 +179088,10 @@ "plasmid_name": "Flag-HA-UCHL1", "sequence-type": "addgene-full", "addgene_id": "22563", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -168935,7 +179136,10 @@ "plasmid_name": "PB-TA-ERN", "sequence-type": "depositor-full", "addgene_id": "80474", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "att_sites": [ "attR1", @@ -168993,7 +179197,10 @@ "plasmid_name": "pLenti PGK mKate2-OGT 5N5A (Puro)", "sequence-type": "addgene-full", "addgene_id": "154293", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "att_sites": [ "attB1", @@ -169055,7 +179262,10 @@ "plasmid_name": "pCW57.1 KBTBD4 P311PP", "sequence-type": "addgene-full", "addgene_id": "184625", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-022-00983-4", + "https://www.ncbi.nlm.nih.gov/pubmed/35379950" + ], "kit": null, "att_sites": [ "attB1", @@ -169110,7 +179320,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0533-luc2", "sequence-type": "addgene-full", "addgene_id": "214661", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -169155,7 +179368,10 @@ "plasmid_name": "pDONR223_SMAD4_WT", "sequence-type": "addgene-full", "addgene_id": "82216", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -169184,7 +179400,9 @@ "plasmid_name": "Shim_ThrRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202652", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "att_sites": [ "attB1", @@ -169223,7 +179441,10 @@ "plasmid_name": "TRIM33-GFP", "sequence-type": "addgene-full", "addgene_id": "65399", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -169276,7 +179497,10 @@ "plasmid_name": "pGWB512", "sequence-type": "depositor-full", "addgene_id": "74854", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -169324,7 +179548,10 @@ "plasmid_name": "pDONR221_SLC9A5", "sequence-type": "addgene-full", "addgene_id": "132163", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -169356,7 +179583,10 @@ "plasmid_name": "pSGE_575_Ubi-2-Trl_dCP", "sequence-type": "depositor-full", "addgene_id": "71167", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -169389,7 +179619,10 @@ "plasmid_name": "pDONR221_SLC27A4", "sequence-type": "addgene-full", "addgene_id": "132283", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -169420,7 +179653,10 @@ "plasmid_name": "pENTR L3-4XeGFP-Myc-L2", "sequence-type": "depositor-full", "addgene_id": "32316", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attL2", @@ -169453,7 +179689,10 @@ "plasmid_name": "WDR4_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176984", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -169504,7 +179743,6 @@ "plasmid_name": "R777-E081 Hs.EXOC8", "sequence-type": "depositor-full", "addgene_id": "70365", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -169532,7 +179770,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF7b", "sequence-type": "addgene-full", "addgene_id": "169394", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -169575,7 +179812,10 @@ "plasmid_name": "pAM-PAT-ProGL2 GW", "sequence-type": "depositor-full", "addgene_id": "80689", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.104.030486", + "https://www.ncbi.nlm.nih.gov/pubmed/15749764" + ], "kit": null, "att_sites": [ "attR1", @@ -169607,7 +179847,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_F65A", "sequence-type": "depositor-full", "addgene_id": "65092", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -169652,7 +179895,10 @@ "plasmid_name": "pDONR223_OR2T33_p.W49L", "sequence-type": "addgene-full", "addgene_id": "81324", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -169684,7 +179930,6 @@ "plasmid_name": "IDG_KCNH4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161701", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -169743,7 +179988,10 @@ "plasmid_name": "pDONR223-ADRBK1", "sequence-type": "addgene-full", "addgene_id": "23835", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -169773,7 +180021,10 @@ "plasmid_name": "pDONR221_SLC5A8", "sequence-type": "addgene-full", "addgene_id": "132218", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -169804,7 +180055,10 @@ "plasmid_name": "pHAGE-PIK3R1-F646S", "sequence-type": "addgene-full", "addgene_id": "116590", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -169855,7 +180109,10 @@ "plasmid_name": "478 p5Efli1ep", "sequence-type": "depositor-full", "addgene_id": "31160", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attL4", @@ -169886,7 +180143,10 @@ "plasmid_name": "pMuLE_ENTR_12GLI-FLuc_R4-R3", "sequence-type": "addgene-full", "addgene_id": "113712", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "att_sites": [ "attR3", @@ -169923,7 +180183,6 @@ "plasmid_name": "R777-E318 Hs.SOS1-nostop", "sequence-type": "depositor-full", "addgene_id": "70602", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -169951,7 +180210,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-As", "sequence-type": "addgene-full", "addgene_id": "86196", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "att_sites": [ "attL2", @@ -169981,7 +180243,9 @@ "plasmid_name": "pLX317-EGFP", "sequence-type": "addgene-full", "addgene_id": "115439", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "att_sites": [ "attB1", @@ -170045,7 +180309,10 @@ "plasmid_name": "pHAGE-RET-V121I", "sequence-type": "addgene-full", "addgene_id": "116670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -170094,7 +180361,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAP G116", "sequence-type": "addgene-full", "addgene_id": "123099", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -170138,7 +180408,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-LMTK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170580", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -170204,7 +180473,10 @@ "plasmid_name": "pLenti GW V5 Eco/Dam mse EMD", "sequence-type": "addgene-full", "addgene_id": "182675", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201439789", + "https://www.ncbi.nlm.nih.gov/pubmed/25784758" + ], "kit": null, "att_sites": [ "attB1", @@ -170261,7 +180533,10 @@ "plasmid_name": "pmCellFree_KA1", "sequence-type": "addgene-full", "addgene_id": "145369", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attR1", @@ -170309,7 +180584,10 @@ "plasmid_name": "pGL2208", "sequence-type": "addgene-full", "addgene_id": "137049", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-9210-2_10", + "https://www.ncbi.nlm.nih.gov/pubmed/30980305" + ], "kit": null, "att_sites": [ "attL1", @@ -170342,7 +180620,6 @@ "plasmid_name": "CTNNB1 - R376H in pENTR", "sequence-type": "addgene-full", "addgene_id": "216619", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -170372,7 +180649,10 @@ "plasmid_name": "pHAGE-PIK3CA-T1025A", "sequence-type": "addgene-full", "addgene_id": "116543", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -170426,7 +180706,10 @@ "plasmid_name": "TFORF3522", "sequence-type": "depositor-full", "addgene_id": "144998", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -170486,7 +180769,10 @@ "plasmid_name": "pMDJ17 - pEXP[Peft-3 | dendra2 (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159803", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -170523,7 +180809,6 @@ "plasmid_name": "pAG416GAL10-DUGV_OTU", "sequence-type": "addgene-full", "addgene_id": "203463", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -170572,7 +180857,10 @@ "plasmid_name": "pDONR221-SLC25A23_STOP", "sequence-type": "depositor-full", "addgene_id": "161134", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -170603,7 +180891,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0402-luc2", "sequence-type": "addgene-full", "addgene_id": "214629", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214629.addgene-full.gb" }, @@ -170612,7 +180903,10 @@ "plasmid_name": "pENTR_L1-YFP-miniTurbo-NES-L2", "sequence-type": "addgene-full", "addgene_id": "127351", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL1", @@ -170649,7 +180943,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS6", "sequence-type": "depositor-full", "addgene_id": "20245", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "att_sites": [ "attB1", @@ -170682,7 +180979,6 @@ "plasmid_name": "pET-53-RtcA", "sequence-type": "addgene-full", "addgene_id": "107876", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -170722,7 +181018,10 @@ "plasmid_name": "pHAGE-PTEN-Y336*", "sequence-type": "addgene-full", "addgene_id": "116638", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116638.addgene-full.gb" }, @@ -170731,7 +181030,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-Hygro", "sequence-type": "addgene-full", "addgene_id": "158555", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -170793,7 +181091,10 @@ "plasmid_name": "pENTR223-BILF1", "sequence-type": "addgene-full", "addgene_id": "195797", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -170822,7 +181123,10 @@ "plasmid_name": "C514-E12: attB5r-RU5u-His6-eGFP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162954", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -170856,7 +181160,6 @@ "plasmid_name": "pPV476", "sequence-type": "depositor-full", "addgene_id": "42929", - "references": [], "kit": null, "file": "data/addgene_plasmids/42929.depositor-full.gb" }, @@ -170865,7 +181168,10 @@ "plasmid_name": "pENTR223-BVRF2", "sequence-type": "addgene-full", "addgene_id": "195823", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -170894,7 +181200,10 @@ "plasmid_name": "RRP1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176957", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -170946,7 +181255,10 @@ "plasmid_name": "pInducer 21-3xFlag-hMEFV-F479L", "sequence-type": "addgene-full", "addgene_id": "195477", - "references": [], + "references": [ + "https://doi.org/10.1038/s41419-023-05745-9", + "https://www.ncbi.nlm.nih.gov/pubmed/36966139" + ], "kit": null, "att_sites": [ "attB1", @@ -171003,7 +181315,9 @@ "plasmid_name": "pMpGWB320", "sequence-type": "depositor-full", "addgene_id": "68648", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -171049,7 +181363,10 @@ "plasmid_name": "pILL5-NLS-3xmCitrine", "sequence-type": "addgene-full", "addgene_id": "192525", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.112676", + "https://www.ncbi.nlm.nih.gov/pubmed/37342910" + ], "kit": null, "att_sites": [ "attB1", @@ -171094,7 +181411,10 @@ "plasmid_name": "NCH2exp", "sequence-type": "addgene-full", "addgene_id": "131019", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "att_sites": [ "attB1", @@ -171131,7 +181451,10 @@ "plasmid_name": "pDONR221_SVOPL", "sequence-type": "addgene-full", "addgene_id": "132250", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -171163,7 +181486,6 @@ "plasmid_name": "pAMW-Wnk", "sequence-type": "addgene-full", "addgene_id": "203978", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -171192,7 +181514,10 @@ "plasmid_name": "pDONR223_PRKACA_WT", "sequence-type": "addgene-full", "addgene_id": "82311", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -171221,7 +181546,10 @@ "plasmid_name": "pLX304 PRDM14", "sequence-type": "addgene-full", "addgene_id": "193688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -171280,7 +181608,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL2 G116", "sequence-type": "addgene-full", "addgene_id": "123105", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -171324,7 +181655,10 @@ "plasmid_name": "GRB2-SHC", "sequence-type": "addgene-full", "addgene_id": "139623", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -171368,7 +181702,10 @@ "plasmid_name": "pZA3", "sequence-type": "addgene-full", "addgene_id": "158481", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -171397,7 +181734,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir193b-1", "sequence-type": "depositor-full", "addgene_id": "46731", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -171447,7 +181787,10 @@ "plasmid_name": "pDONR221_SLC35A1", "sequence-type": "addgene-full", "addgene_id": "132064", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -171478,7 +181821,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp6", "sequence-type": "depositor-full", "addgene_id": "168895", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -171507,7 +181853,10 @@ "plasmid_name": "pENTR-R4R3-3xmEGFP-N", "sequence-type": "depositor-full", "addgene_id": "113748", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -171542,7 +181891,10 @@ "plasmid_name": "MSCV-CMV-DsRed-IRES-d1EGFP", "sequence-type": "addgene-full", "addgene_id": "41942", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1160489", + "https://www.ncbi.nlm.nih.gov/pubmed/18988847" + ], "kit": null, "file": "data/addgene_plasmids/41942.addgene-full.gb" }, @@ -171551,7 +181903,10 @@ "plasmid_name": "mTALEAD ATP6-2-1", "sequence-type": "addgene-full", "addgene_id": "210829", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "att_sites": [ "attB1", @@ -171590,7 +181945,10 @@ "plasmid_name": "pAG426GPD-EGFP-ccdB", "sequence-type": "addgene-full", "addgene_id": "14324", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -171653,7 +182011,9 @@ "plasmid_name": "pEpic", "sequence-type": "depositor-full", "addgene_id": "84372", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attR3", @@ -171713,7 +182073,10 @@ "plasmid_name": "pDONR223-JAK1", "sequence-type": "addgene-full", "addgene_id": "23932", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -171725,7 +182088,6 @@ "plasmid_name": "pSMPUW_6.3_M1-gateway-HA", "sequence-type": "addgene-full", "addgene_id": "128439", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -171767,7 +182129,6 @@ "plasmid_name": "pENTR-TetR", "sequence-type": "addgene-full", "addgene_id": "139558", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -171800,7 +182161,10 @@ "plasmid_name": "pHAGE-PPP2R1A", "sequence-type": "addgene-full", "addgene_id": "116777", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -171855,7 +182219,10 @@ "plasmid_name": "pSLIK 3xHA-MKK6-EE neo", "sequence-type": "addgene-full", "addgene_id": "47546", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2012.11.009", + "https://www.ncbi.nlm.nih.gov/pubmed/23332156" + ], "kit": null, "att_sites": [ "attB1", @@ -171924,7 +182291,10 @@ "plasmid_name": "pMuLE ENTR MCS L5-L2", "sequence-type": "depositor-full", "addgene_id": "62085", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -171955,7 +182325,10 @@ "plasmid_name": "pAG413GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14261", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -172015,7 +182388,9 @@ "plasmid_name": "pMpGWB215", "sequence-type": "depositor-full", "addgene_id": "68606", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -172067,7 +182442,6 @@ "plasmid_name": "STXBP1 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216624", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -172096,7 +182470,10 @@ "plasmid_name": "pGW-TurboID-GOI", "sequence-type": "addgene-full", "addgene_id": "209380", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "att_sites": [ "attR1", @@ -172145,7 +182522,10 @@ "plasmid_name": "pDONR223_STAT1_p.Y701F", "sequence-type": "addgene-full", "addgene_id": "82183", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -172174,7 +182554,6 @@ "plasmid_name": "pAG426-GAL-APP-CTF", "sequence-type": "addgene-full", "addgene_id": "181732", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -172228,7 +182607,10 @@ "plasmid_name": "pNJB80", "sequence-type": "depositor-full", "addgene_id": "51518", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attL2", @@ -172262,7 +182644,10 @@ "plasmid_name": "pcDNA3.1_Zeo_3xSH2(GRB2)-CTEV-2xHA", "sequence-type": "addgene-full", "addgene_id": "214614", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214614.addgene-full.gb" }, @@ -172271,7 +182656,10 @@ "plasmid_name": "pDONR223_TNFRSF17_WT", "sequence-type": "addgene-full", "addgene_id": "82263", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -172300,7 +182688,10 @@ "plasmid_name": "pAG304GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14136", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -172356,7 +182747,10 @@ "plasmid_name": "pENTR223-CMV-Cre-U6-sgX-U6-sgRb1-U6-sgTrp53-U6-sgRbl2", "sequence-type": "addgene-full", "addgene_id": "209060", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-023-01210-z", + "https://www.ncbi.nlm.nih.gov/pubmed/37591951" + ], "kit": null, "att_sites": [ "attB3", @@ -172398,7 +182792,10 @@ "plasmid_name": "pDONR P2R-P3-IRES_ECFP", "sequence-type": "depositor-full", "addgene_id": "48354", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -172441,7 +182838,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-BTF3", "sequence-type": "depositor-full", "addgene_id": "38075", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -172487,7 +182887,10 @@ "plasmid_name": "pDONR221_SLC27A3", "sequence-type": "addgene-full", "addgene_id": "132116", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132116.addgene-full.gb" }, @@ -172496,7 +182899,10 @@ "plasmid_name": "pDONR223 LC3B2 G120", "sequence-type": "addgene-full", "addgene_id": "123077", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -172525,7 +182931,10 @@ "plasmid_name": "Hsp68-LacZ-Gateway", "sequence-type": "addgene-full", "addgene_id": "37843", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05295", + "https://www.ncbi.nlm.nih.gov/pubmed/17086198" + ], "kit": null, "att_sites": [ "attR1", @@ -172574,7 +182983,10 @@ "plasmid_name": "pcDNA5FRT/TO-SAKS1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113487", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -172618,7 +183030,10 @@ "plasmid_name": "GFP-BRD3", "sequence-type": "addgene-full", "addgene_id": "65377", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -172660,7 +183075,10 @@ "plasmid_name": "pENTR-L1-PGK-Neo-L2", "sequence-type": "addgene-full", "addgene_id": "141007", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL1", @@ -172690,7 +183108,10 @@ "plasmid_name": "pDONR223-ZNF350", "sequence-type": "addgene-full", "addgene_id": "88526", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -172719,7 +183140,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-TAOK1", "sequence-type": "addgene-full", "addgene_id": "172991", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -172764,7 +183188,10 @@ "plasmid_name": "pHAGE-PIK3R1-S460_D464delSREYD", "sequence-type": "addgene-full", "addgene_id": "116605", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -172815,7 +183242,10 @@ "plasmid_name": "pPHAGE_DLD-H450A-C-TAP", "sequence-type": "depositor-full", "addgene_id": "83478", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "att_sites": [ "attB1", @@ -172868,7 +183298,10 @@ "plasmid_name": "C413-E10: attB4-FerHp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162969", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -172905,7 +183338,10 @@ "plasmid_name": "pDONR223_PRR23B_p.H245Q", "sequence-type": "addgene-full", "addgene_id": "81351", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -172937,7 +183373,10 @@ "plasmid_name": "MAC_C_LTK", "sequence-type": "addgene-full", "addgene_id": "187762", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -172982,7 +183421,10 @@ "plasmid_name": "pDONR223_ETS1_WT", "sequence-type": "addgene-full", "addgene_id": "82118", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -173011,7 +183453,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TESK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170615", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -173077,7 +183518,6 @@ "plasmid_name": "R777-E194 Hs.PRKAA2-nostop", "sequence-type": "depositor-full", "addgene_id": "70478", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -173105,7 +183545,10 @@ "plasmid_name": "pDL112", "sequence-type": "addgene-full", "addgene_id": "175917", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -173129,7 +183572,6 @@ "plasmid_name": "pENTR_Hu_PTTG1(WT)", "sequence-type": "addgene-full", "addgene_id": "136342", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -173160,7 +183602,10 @@ "plasmid_name": "MAC_N_BET1", "sequence-type": "addgene-full", "addgene_id": "111683", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -173205,7 +183650,10 @@ "plasmid_name": "pAB-EXPR(PYL-cat_dom_HDAC5)", "sequence-type": "addgene-full", "addgene_id": "114401", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114401.addgene-full.gb" }, @@ -173214,7 +183662,10 @@ "plasmid_name": "W118-1_Flag-hSRPK3", "sequence-type": "addgene-full", "addgene_id": "180404", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180404.addgene-full.gb" }, @@ -173223,7 +183674,10 @@ "plasmid_name": "pPB-cT3G-cERP2-EMX2", "sequence-type": "addgene-full", "addgene_id": "192898", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -173269,7 +183723,10 @@ "plasmid_name": "pDONR221_SLC38A2", "sequence-type": "addgene-full", "addgene_id": "132059", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -173300,7 +183757,10 @@ "plasmid_name": "pHAGE-MAP3K4-P27_P28insP", "sequence-type": "addgene-full", "addgene_id": "116431", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -173356,7 +183816,10 @@ "plasmid_name": "1b58", "sequence-type": "addgene-full", "addgene_id": "177693", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "att_sites": [ "attB1", @@ -173406,7 +183869,10 @@ "plasmid_name": "pLEX307-mFzd4", "sequence-type": "addgene-full", "addgene_id": "102866", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "att_sites": [ "attB1", @@ -173463,7 +183929,10 @@ "plasmid_name": "MAC-CLEC4D", "sequence-type": "addgene-full", "addgene_id": "172411", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -173508,7 +183977,10 @@ "plasmid_name": "pDONR223_TRAT1_p.E76K", "sequence-type": "addgene-full", "addgene_id": "81285", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -173540,7 +184012,6 @@ "plasmid_name": "Hs.KRAS4b Y64A", "sequence-type": "depositor-full", "addgene_id": "83151", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -173566,7 +184037,10 @@ "plasmid_name": "pAG425GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14178", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -173628,7 +184102,6 @@ "plasmid_name": "pAG416GALL-ccdB-6stop", "sequence-type": "addgene-full", "addgene_id": "203511", - "references": [], "kit": null, "att_sites": [ "attR1" @@ -173680,7 +184153,10 @@ "plasmid_name": "pDEST-APLO", "sequence-type": "addgene-full", "addgene_id": "112805", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1707467114", + "https://www.ncbi.nlm.nih.gov/pubmed/28874572" + ], "kit": null, "att_sites": [ "attR1", @@ -173718,7 +184194,10 @@ "plasmid_name": "HJP-179-IVS-Syn21-NrdJ-1C-CreC-WPREw", "sequence-type": "addgene-full", "addgene_id": "162472", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "att_sites": [ "attR1", @@ -173754,7 +184233,10 @@ "plasmid_name": "pYPQ255-x3.7", "sequence-type": "addgene-full", "addgene_id": "124311", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "att_sites": [ "attL1", @@ -173790,7 +184272,6 @@ "plasmid_name": "p663-UBC-V5-BRSK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135270", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -173855,7 +184336,10 @@ "plasmid_name": "MSCV-LMP1-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "220350", - "references": [], + "references": [ + "https://doi.org/10.3389/fimmu.2023.1331730", + "https://www.ncbi.nlm.nih.gov/pubmed/38169736" + ], "kit": null, "att_sites": [ "attB1", @@ -173899,7 +184383,10 @@ "plasmid_name": "pMx/ATP8B2(E171Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209254", - "references": [], + "references": [ + "https://doi.org/10.1080/10985549.2024.2391829", + "https://www.ncbi.nlm.nih.gov/pubmed/39219493" + ], "kit": null, "att_sites": [ "attB1", @@ -173934,7 +184421,10 @@ "plasmid_name": "pTW326", "sequence-type": "addgene-full", "addgene_id": "115957", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "att_sites": [ "attP1", @@ -173971,7 +184461,10 @@ "plasmid_name": "CMV-loxp-DsRed-loxp-eGFP", "sequence-type": "addgene-full", "addgene_id": "141148", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-12412-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31649238" + ], "kit": null, "att_sites": [ "attB1", @@ -174030,7 +184523,10 @@ "plasmid_name": "TERT - R865C", "sequence-type": "addgene-full", "addgene_id": "213926", - "references": [], + "references": [ + "https://doi.org/10.1182/blood.2021011075", + "https://www.ncbi.nlm.nih.gov/pubmed/34019641" + ], "kit": null, "att_sites": [ "attB1", @@ -174085,7 +184581,10 @@ "plasmid_name": "pCK074 p5E exorh:EGFP", "sequence-type": "addgene-full", "addgene_id": "195951", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL4", @@ -174120,7 +184619,10 @@ "plasmid_name": "pMuLE ENTR CMV PuroR L5-L2", "sequence-type": "depositor-full", "addgene_id": "62161", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -174156,7 +184658,10 @@ "plasmid_name": "pcDNA-DEST53-mTrific", "sequence-type": "depositor-full", "addgene_id": "51031", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M512755200", + "https://www.ncbi.nlm.nih.gov/pubmed/16434393" + ], "kit": null, "att_sites": [ "attB1", @@ -174208,7 +184713,6 @@ "plasmid_name": "R777-E152 Hs.PAK3-nostop", "sequence-type": "depositor-full", "addgene_id": "70436", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -174236,7 +184740,10 @@ "plasmid_name": "pAG415GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14385", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -174298,7 +184805,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PAK5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189896", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -174364,7 +184870,10 @@ "plasmid_name": "pHAGE-RNF8-C403S", "sequence-type": "addgene-full", "addgene_id": "221703", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-023-01192-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37468549" + ], "kit": null, "att_sites": [ "attB1", @@ -174414,7 +184923,10 @@ "plasmid_name": "pEZYeGFP-SARS-CoV-2E stop", "sequence-type": "addgene-full", "addgene_id": "224581", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms241612793", + "https://www.ncbi.nlm.nih.gov/pubmed/37628973" + ], "kit": null, "att_sites": [ "attB1", @@ -174456,7 +184968,10 @@ "plasmid_name": "pDONR223_RNF212_WT", "sequence-type": "addgene-full", "addgene_id": "81860", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -174488,7 +185003,10 @@ "plasmid_name": "pENTR{KDRT}", "sequence-type": "addgene-full", "addgene_id": "182165", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attL1", @@ -174519,7 +185037,10 @@ "plasmid_name": "p7127 pHAGE-P-CMVt-N-HA-GAW-FTL", "sequence-type": "addgene-full", "addgene_id": "100153", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -174571,7 +185092,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 E_nostop", "sequence-type": "addgene-full", "addgene_id": "168666", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -174600,7 +185124,10 @@ "plasmid_name": "p2R3a-GUS-OcsT", "sequence-type": "depositor-full", "addgene_id": "71267", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL3", @@ -174637,7 +185164,10 @@ "plasmid_name": "pAC1812_pCR8-gCasRx-CUG (control gRNA)", "sequence-type": "addgene-full", "addgene_id": "118645", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -174670,7 +185200,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 N2_nostop", "sequence-type": "addgene-full", "addgene_id": "168586", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -174699,7 +185232,10 @@ "plasmid_name": "p3E-rab7b", "sequence-type": "addgene-full", "addgene_id": "109724", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -174730,7 +185266,10 @@ "plasmid_name": "TFORF3124", "sequence-type": "addgene-full", "addgene_id": "144600", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -174790,7 +185329,9 @@ "plasmid_name": "pAG426GAL-EGFP", "sequence-type": "addgene-full", "addgene_id": "166143", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attB1", @@ -174848,7 +185389,10 @@ "plasmid_name": "pHAGE-EGFR-N444S", "sequence-type": "addgene-full", "addgene_id": "116280", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -174902,7 +185446,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 N_nostop", "sequence-type": "addgene-full", "addgene_id": "152987", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -174932,7 +185479,10 @@ "plasmid_name": "pDONR223_COPS2_p.A317D", "sequence-type": "addgene-full", "addgene_id": "81434", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -174964,7 +185514,6 @@ "plasmid_name": "pMSCVhyg-DEST", "sequence-type": "addgene-full", "addgene_id": "119747", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -175009,7 +185558,10 @@ "plasmid_name": "pDONR223_ATG3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82952", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -175038,7 +185590,6 @@ "plasmid_name": "R777-E014 Hs.ARHGEF2-nostop", "sequence-type": "depositor-full", "addgene_id": "70298", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -175066,7 +185617,10 @@ "plasmid_name": "JE301: pMVP (L5-L4) Tir1-P2A-AID", "sequence-type": "addgene-full", "addgene_id": "121722", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -175102,7 +185656,9 @@ "plasmid_name": "pLV_hEF1a_rtTA3", "sequence-type": "addgene-full", "addgene_id": "61472", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25403753" + ], "kit": null, "att_sites": [ "attB1", @@ -175164,7 +185720,6 @@ "plasmid_name": "R777-E229 Hs.RASA2", "sequence-type": "addgene-full", "addgene_id": "70513", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -175193,7 +185748,10 @@ "plasmid_name": "pDONR223_NKX2-4", "sequence-type": "addgene-full", "addgene_id": "221478", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attL1", @@ -175222,7 +185780,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDKL1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158176", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -175288,7 +185845,10 @@ "plasmid_name": "pBi2FC-C-MGGAGM-P2A:mTagBFP2", "sequence-type": "addgene-full", "addgene_id": "216141", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attB1", @@ -175335,7 +185895,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp12", "sequence-type": "addgene-full", "addgene_id": "168949", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -175364,7 +185927,6 @@ "plasmid_name": "R777-E218 Hs.RALB-nostop", "sequence-type": "depositor-full", "addgene_id": "70502", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -175392,7 +185954,10 @@ "plasmid_name": "pD40-His/V5-c-Myc", "sequence-type": "depositor-full", "addgene_id": "45597", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb1110", + "https://www.ncbi.nlm.nih.gov/pubmed/15048125" + ], "kit": null, "att_sites": [ "attB1", @@ -175443,7 +186008,10 @@ "plasmid_name": "pMMK ENTR 4 CMV GST mTagBFP", "sequence-type": "addgene-full", "addgene_id": "206259", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL2", @@ -175474,7 +186042,10 @@ "plasmid_name": "pENTR4_ELAVL1", "sequence-type": "addgene-full", "addgene_id": "106103", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "att_sites": [ "attL1", @@ -175505,7 +186076,10 @@ "plasmid_name": "pSLIK BirA* zeo", "sequence-type": "addgene-full", "addgene_id": "192332", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -175570,7 +186144,10 @@ "plasmid_name": "pLD-puro-Cc-PARK7E163K-VA", "sequence-type": "addgene-full", "addgene_id": "115186", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attB1", @@ -175632,7 +186209,10 @@ "plasmid_name": "pDONR223_RARA_WT", "sequence-type": "addgene-full", "addgene_id": "82886", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -175661,7 +186241,10 @@ "plasmid_name": "pDONR223_MAX_p.R35L", "sequence-type": "addgene-full", "addgene_id": "82732", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -175694,7 +186277,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_UIM-mut", "sequence-type": "addgene-full", "addgene_id": "187148", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -175739,7 +186325,10 @@ "plasmid_name": "pDONR-IAA19", "sequence-type": "depositor-full", "addgene_id": "83856", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -175770,7 +186359,10 @@ "plasmid_name": "pYPQ284-RVRR", "sequence-type": "addgene-full", "addgene_id": "160327", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -175802,7 +186394,10 @@ "plasmid_name": "pTC-ApoE-Tet-YAP", "sequence-type": "addgene-full", "addgene_id": "85580", - "references": [], + "references": [ + "https://doi.org/10.1002/jgm.2940", + "https://www.ncbi.nlm.nih.gov/pubmed/28009940" + ], "kit": null, "att_sites": [ "attB1", @@ -175850,7 +186445,10 @@ "plasmid_name": "pYPQ148", "sequence-type": "depositor-full", "addgene_id": "69300", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL2", @@ -175882,7 +186480,10 @@ "plasmid_name": "TFORF2958", "sequence-type": "addgene-full", "addgene_id": "144434", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -175942,7 +186543,10 @@ "plasmid_name": "VHACg/pDONR221", "sequence-type": "addgene-full", "addgene_id": "172094", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.00722", + "https://www.ncbi.nlm.nih.gov/pubmed/31484679" + ], "kit": null, "att_sites": [ "attL1", @@ -175973,7 +186577,10 @@ "plasmid_name": "pDONR223_XPO1_p.E571A", "sequence-type": "addgene-full", "addgene_id": "81600", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -176005,7 +186612,10 @@ "plasmid_name": "pDONR221-SLC38A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161225", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -176036,7 +186646,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep164", "sequence-type": "addgene-full", "addgene_id": "136873", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136873.addgene-full.gb" }, @@ -176045,7 +186658,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-C-mEGFP", "sequence-type": "addgene-full", "addgene_id": "223953", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -176096,7 +186708,10 @@ "plasmid_name": "pDONR221_SLC13A2", "sequence-type": "addgene-full", "addgene_id": "131921", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -176127,7 +186742,6 @@ "plasmid_name": "pLenti6.3/NS4B", "sequence-type": "addgene-full", "addgene_id": "120840", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -176186,7 +186800,9 @@ "plasmid_name": "pMpGWB433", "sequence-type": "depositor-full", "addgene_id": "68698", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -176239,7 +186855,10 @@ "plasmid_name": "TFORF3384", "sequence-type": "addgene-full", "addgene_id": "144860", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -176299,7 +186918,10 @@ "plasmid_name": "pHAGE-ERBB2-T862A", "sequence-type": "addgene-full", "addgene_id": "116354", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -176349,7 +186971,10 @@ "plasmid_name": "pcDNA3_DRD2-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194362", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -176406,7 +187031,9 @@ "plasmid_name": "pPB-cT3G-cERP2-PAX6b", "sequence-type": "addgene-full", "addgene_id": "222577", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222577.addgene-full.gb" }, @@ -176415,7 +187042,10 @@ "plasmid_name": "pDONR 221-AIP2 (NON-STOP)", "sequence-type": "addgene-full", "addgene_id": "118678", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attL1", @@ -176446,7 +187076,10 @@ "plasmid_name": "p3E-rab5c", "sequence-type": "addgene-full", "addgene_id": "109719", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -176477,7 +187110,10 @@ "plasmid_name": "pDONR223_FBXO15_p.S366G", "sequence-type": "addgene-full", "addgene_id": "81409", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -176509,7 +187145,10 @@ "plasmid_name": "LA401: pMVP (L3-L2) P2A-Blast + WPRE", "sequence-type": "addgene-full", "addgene_id": "121784", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -176545,7 +187184,10 @@ "plasmid_name": "KN901: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS-KRAB", "sequence-type": "addgene-full", "addgene_id": "121830", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -176581,7 +187223,6 @@ "plasmid_name": "Hs.HRAS", "sequence-type": "depositor-full", "addgene_id": "83181", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -176607,7 +187248,10 @@ "plasmid_name": "pDONR223_KEAP1_p.G603W", "sequence-type": "addgene-full", "addgene_id": "81492", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -176637,7 +187281,10 @@ "plasmid_name": "pHAGE-DDX3X-E285K", "sequence-type": "addgene-full", "addgene_id": "116226", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -176692,7 +187339,10 @@ "plasmid_name": "pLVX-HA-UBE3B\u0394HECT-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107347", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "att_sites": [ "attB1", @@ -176742,7 +187392,10 @@ "plasmid_name": "TFORF3436", "sequence-type": "addgene-full", "addgene_id": "144912", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -176802,7 +187455,10 @@ "plasmid_name": "BTG3", "sequence-type": "addgene-full", "addgene_id": "155427", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -176845,7 +187501,10 @@ "plasmid_name": "pENTR-Site5", "sequence-type": "depositor-full", "addgene_id": "24514", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0009846", + "https://www.ncbi.nlm.nih.gov/pubmed/20352097" + ], "kit": null, "att_sites": [ "attL1", @@ -176892,7 +187551,10 @@ "plasmid_name": "TFORF3070", "sequence-type": "addgene-full", "addgene_id": "144546", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -176952,7 +187614,9 @@ "plasmid_name": "pDONR221-RPS2", "sequence-type": "addgene-full", "addgene_id": "166205", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -176983,7 +187647,10 @@ "plasmid_name": "pDONR221-SLC46A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161357", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -177014,7 +187681,9 @@ "plasmid_name": "p3E-WPRE-bGH-pA (JDW 1221)", "sequence-type": "addgene-full", "addgene_id": "224527", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -177049,7 +187718,10 @@ "plasmid_name": "pMXs-GLIS1", "sequence-type": "addgene-full", "addgene_id": "30166", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10106", + "https://www.ncbi.nlm.nih.gov/pubmed/21654807" + ], "kit": null, "att_sites": [ "attB1", @@ -177077,7 +187749,10 @@ "plasmid_name": "pAG306GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14355", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -177134,7 +187809,10 @@ "plasmid_name": "pMMDS DEST", "sequence-type": "addgene-full", "addgene_id": "206264", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attR1", @@ -177160,7 +187838,10 @@ "plasmid_name": "TFORF3296", "sequence-type": "addgene-full", "addgene_id": "144772", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144772.addgene-full.gb" }, @@ -177169,7 +187850,10 @@ "plasmid_name": "actc1b-mKate2-rab7b", "sequence-type": "addgene-full", "addgene_id": "109656", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -177211,7 +187895,10 @@ "plasmid_name": "pENTR-ZmIAA4", "sequence-type": "addgene-full", "addgene_id": "188429", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -177242,7 +187929,10 @@ "plasmid_name": "pDONR221_SLC22A13", "sequence-type": "addgene-full", "addgene_id": "131987", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -177273,7 +187963,10 @@ "plasmid_name": "FUBP1", "sequence-type": "addgene-full", "addgene_id": "155613", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -177316,7 +188009,9 @@ "plasmid_name": "pLenti/TO/EYFP-P2A-IDH1(HA)", "sequence-type": "addgene-full", "addgene_id": "122482", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29288440" + ], "kit": null, "att_sites": [ "attB1", @@ -177382,7 +188077,10 @@ "plasmid_name": "pDONR223_RB1_p.F755I", "sequence-type": "addgene-full", "addgene_id": "81546", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -177414,7 +188112,10 @@ "plasmid_name": "pDONR221-SLC18A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161163", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -177445,7 +188146,10 @@ "plasmid_name": "pDONR221-SLC39A13_STOP", "sequence-type": "addgene-full", "addgene_id": "161283", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -177476,7 +188180,10 @@ "plasmid_name": "5'-3xFLAG Kansl3+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212053", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -177517,7 +188224,10 @@ "plasmid_name": "pDONR223_ACTG1_WT", "sequence-type": "addgene-full", "addgene_id": "81912", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -177549,7 +188259,9 @@ "plasmid_name": "pMpGWB127", "sequence-type": "depositor-full", "addgene_id": "68581", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -177596,7 +188308,10 @@ "plasmid_name": "TFORF3016", "sequence-type": "addgene-full", "addgene_id": "144492", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -177656,7 +188371,10 @@ "plasmid_name": "pR26 GFP Dest", "sequence-type": "depositor-full", "addgene_id": "74283", - "references": [], + "references": [ + "https://doi.org/10.1186/s12896-016-0234-4", + "https://www.ncbi.nlm.nih.gov/pubmed/26772810" + ], "kit": null, "att_sites": [ "attR1", @@ -177724,7 +188442,10 @@ "plasmid_name": "pLenti_EF1a_Flag_TP53_R248W+P278A", "sequence-type": "addgene-full", "addgene_id": "183115", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "att_sites": [ "attB1", @@ -177783,7 +188504,10 @@ "plasmid_name": "TFORF2933", "sequence-type": "addgene-full", "addgene_id": "144409", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -177843,7 +188567,10 @@ "plasmid_name": "MAC_N_COMMD4", "sequence-type": "addgene-full", "addgene_id": "209677", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -177888,7 +188615,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-pFOGc::RfA", "sequence-type": "addgene-full", "addgene_id": "186397", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -177925,7 +188655,10 @@ "plasmid_name": "pLenti X2 Neo DEST (w18-1)", "sequence-type": "depositor-full", "addgene_id": "17390", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -177986,7 +188719,10 @@ "plasmid_name": "pDONR221-kcnj3b", "sequence-type": "addgene-full", "addgene_id": "173130", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -178017,7 +188753,10 @@ "plasmid_name": "pBS L30 Ruby3-Rab6A", "sequence-type": "addgene-full", "addgene_id": "135653", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.aba7803", + "https://www.ncbi.nlm.nih.gov/pubmed/33523982" + ], "kit": null, "att_sites": [ "attB1", @@ -178061,7 +188800,10 @@ "plasmid_name": "pDONR221-SLC25A30_STOP", "sequence-type": "addgene-full", "addgene_id": "161218", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -178092,7 +188834,10 @@ "plasmid_name": "MED9_pLX307", "sequence-type": "addgene-full", "addgene_id": "98352", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -178152,7 +188897,6 @@ "plasmid_name": "R777-E048 Hs.E2F2-nostop", "sequence-type": "depositor-full", "addgene_id": "70332", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -178180,7 +188924,10 @@ "plasmid_name": "pDONR221-ZNF736", "sequence-type": "depositor-full", "addgene_id": "101602", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -178211,7 +188958,10 @@ "plasmid_name": "pDONR223_KEAP1_p.R601W", "sequence-type": "addgene-full", "addgene_id": "82794", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL2" @@ -178238,7 +188988,10 @@ "plasmid_name": "pDONR223_BRAF_p.K601N", "sequence-type": "addgene-full", "addgene_id": "82820", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -178268,7 +189021,10 @@ "plasmid_name": "pAG306-GPD-VMA1 chr I", "sequence-type": "depositor-full", "addgene_id": "41896", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11654", + "https://www.ncbi.nlm.nih.gov/pubmed/23172144" + ], "kit": null, "att_sites": [ "attB1", @@ -178318,7 +189074,10 @@ "plasmid_name": "pHAGE-ESR1-L536Q", "sequence-type": "addgene-full", "addgene_id": "116369", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -178370,7 +189129,10 @@ "plasmid_name": "pGWB409", "sequence-type": "depositor-full", "addgene_id": "74803", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74803.depositor-full.gb" }, @@ -178379,7 +189141,10 @@ "plasmid_name": "pZmUBQ:GW", "sequence-type": "addgene-full", "addgene_id": "132358", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0502-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31666804" + ], "kit": null, "att_sites": [ "attR1", @@ -178417,7 +189182,10 @@ "plasmid_name": "pLX313-TP53-P278A", "sequence-type": "addgene-full", "addgene_id": "118015", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-018-0204-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30224644" + ], "kit": null, "att_sites": [ "attB1", @@ -178476,7 +189244,10 @@ "plasmid_name": "pDONR223_PDZD11_p.R133H", "sequence-type": "addgene-full", "addgene_id": "81264", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -178508,7 +189279,6 @@ "plasmid_name": "IDG_CLIC5_OE_1", "sequence-type": "addgene-full", "addgene_id": "161641", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -178567,7 +189337,10 @@ "plasmid_name": "pDESTmycTNRC6C", "sequence-type": "depositor-full", "addgene_id": "19874", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -178616,7 +189389,10 @@ "plasmid_name": "FL-mCherry", "sequence-type": "addgene-full", "addgene_id": "78862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "att_sites": [ "attB1", @@ -178672,7 +189448,10 @@ "plasmid_name": "pDONR207-MUM2sp-RglA", "sequence-type": "addgene-full", "addgene_id": "170720", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcab077", + "https://www.ncbi.nlm.nih.gov/pubmed/34059917" + ], "kit": null, "att_sites": [ "attL1", @@ -178696,7 +189475,10 @@ "plasmid_name": "MAC_C_CH60", "sequence-type": "addgene-full", "addgene_id": "111662", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -178741,7 +189523,10 @@ "plasmid_name": "D. vulgaris Cas7/pHMGWA", "sequence-type": "addgene-full", "addgene_id": "81184", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2016.07.027", + "https://www.ncbi.nlm.nih.gov/pubmed/27588603" + ], "kit": null, "att_sites": [ "attB1", @@ -178784,7 +189569,10 @@ "plasmid_name": "pYPQ265G2", "sequence-type": "addgene-full", "addgene_id": "164723", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -178818,7 +189606,10 @@ "plasmid_name": "pDONR-attL5-CRY2-mCh-attL2", "sequence-type": "addgene-full", "addgene_id": "160438", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.3856", + "https://www.ncbi.nlm.nih.gov/pubmed/33659494" + ], "kit": null, "att_sites": [ "attL2", @@ -178854,7 +189645,10 @@ "plasmid_name": "pDONR223-LRPPRC", "sequence-type": "addgene-full", "addgene_id": "23521", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -178886,7 +189680,6 @@ "plasmid_name": "R777-E280 Hs.RHOB-nostop", "sequence-type": "depositor-full", "addgene_id": "70564", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -178915,7 +189708,10 @@ "plasmid_name": "pHAGE-DDX3X", "sequence-type": "addgene-full", "addgene_id": "116730", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -178965,7 +189761,10 @@ "plasmid_name": "SF3B3", "sequence-type": "addgene-full", "addgene_id": "156003", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -179008,7 +189807,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp10", "sequence-type": "depositor-full", "addgene_id": "168823", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -179037,7 +189839,10 @@ "plasmid_name": "pCPP5530", "sequence-type": "addgene-full", "addgene_id": "128705", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -179068,7 +189873,10 @@ "plasmid_name": "pDONR221_SLC22A16", "sequence-type": "addgene-full", "addgene_id": "132023", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -179100,7 +189908,10 @@ "plasmid_name": "pHAGE-3FLAG-TFR1", "sequence-type": "addgene-full", "addgene_id": "176490", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "att_sites": [ "attB1", @@ -179151,7 +189962,6 @@ "plasmid_name": "pTpPBR11_accNAT_GWB", "sequence-type": "addgene-full", "addgene_id": "154033", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -179188,7 +189998,10 @@ "plasmid_name": "pDONR221-ZNF852_isoform1", "sequence-type": "depositor-full", "addgene_id": "101533", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -179219,7 +190032,6 @@ "plasmid_name": "pDEST26-hTICAM1-Nluc", "sequence-type": "addgene-full", "addgene_id": "197634", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -179271,7 +190083,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV NS4A", "sequence-type": "addgene-full", "addgene_id": "145366", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -179314,7 +190129,10 @@ "plasmid_name": "C234-E24: attB2r-Strep2-attB3", "sequence-type": "addgene-full", "addgene_id": "162913", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -179344,7 +190162,10 @@ "plasmid_name": "pDONR223_VEGFC_WT", "sequence-type": "addgene-full", "addgene_id": "82282", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -179373,7 +190194,9 @@ "plasmid_name": "piggyBac-rtTA (4th_Gen)-SNCA(A53T-DNAC)-sfGFP-IRES-NGN2-puro (VK_1124)", "sequence-type": "addgene-full", "addgene_id": "209081", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.11.08.515615" + ], "kit": null, "att_sites": [ "attB1", @@ -179433,7 +190256,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3C G126", "sequence-type": "addgene-full", "addgene_id": "123096", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -179477,7 +190303,10 @@ "plasmid_name": "pAd-PR.Cre", "sequence-type": "addgene-full", "addgene_id": "192936", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "att_sites": [ "attB1", @@ -179512,7 +190341,10 @@ "plasmid_name": "ADAMTS5_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53819", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "att_sites": [ "attB1", @@ -179551,7 +190383,10 @@ "plasmid_name": "pDONR221_SLC5A11", "sequence-type": "addgene-full", "addgene_id": "132217", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -179582,7 +190417,10 @@ "plasmid_name": "pMCS-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209361", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -179628,7 +190466,10 @@ "plasmid_name": "p667-UBC-NRF1-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207810", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -179693,7 +190534,10 @@ "plasmid_name": "pDEST27-GST-hMSN", "sequence-type": "addgene-full", "addgene_id": "211823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2023.105382", + "https://www.ncbi.nlm.nih.gov/pubmed/37866628" + ], "kit": null, "att_sites": [ "attB1", @@ -179741,7 +190585,10 @@ "plasmid_name": "pDONR223_SNAI2_WT", "sequence-type": "addgene-full", "addgene_id": "82162", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -179770,7 +190617,10 @@ "plasmid_name": "pLX_TRC311 ETV1", "sequence-type": "depositor-full", "addgene_id": "74981", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/28178529" + ], "kit": null, "att_sites": [ "attB1", @@ -179828,7 +190678,10 @@ "plasmid_name": "pAG426GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14299", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -179891,7 +190744,10 @@ "plasmid_name": "MAC_C_RON", "sequence-type": "addgene-full", "addgene_id": "187783", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -179936,7 +190792,10 @@ "plasmid_name": "pCFJ1972 - [1-2] ENTR - Flour - TagBFP2(NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159844", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -179968,7 +190827,10 @@ "plasmid_name": "pHAGE-PIK3CA-I910V", "sequence-type": "addgene-full", "addgene_id": "116504", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -180022,7 +190884,10 @@ "plasmid_name": "pENTR eGFPCRE L1-R5", "sequence-type": "depositor-full", "addgene_id": "43960", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "att_sites": [ "attL1", @@ -180057,7 +190922,10 @@ "plasmid_name": "599 p3E-mcs1", "sequence-type": "depositor-full", "addgene_id": "49004", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "att_sites": [ "attL3", @@ -180088,7 +190956,10 @@ "plasmid_name": "Zebrabow-GateDest", "sequence-type": "addgene-full", "addgene_id": "118221", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094631", + "https://www.ncbi.nlm.nih.gov/pubmed/23757414" + ], "kit": null, "att_sites": [ "attR1", @@ -180136,7 +191007,10 @@ "plasmid_name": "pcDNA5/BirA/FLAG-DDX54", "sequence-type": "addgene-full", "addgene_id": "97063", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.218438.116", + "https://www.ncbi.nlm.nih.gov/pubmed/28596291" + ], "kit": null, "att_sites": [ "attB1", @@ -180181,7 +191055,10 @@ "plasmid_name": "pDONR221-SLC13A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161475", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -180212,7 +191089,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj13-Q153H-EGFP", "sequence-type": "addgene-full", "addgene_id": "164943", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB1", @@ -180256,7 +191136,10 @@ "plasmid_name": "pDONR223_NFKBIB_WT", "sequence-type": "addgene-full", "addgene_id": "82219", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -180285,7 +191168,9 @@ "plasmid_name": "pDRF'- AmTryoshka1;3-LS-F138I-T78H", "sequence-type": "addgene-full", "addgene_id": "100963", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "att_sites": [ "attB1", @@ -180329,7 +191214,10 @@ "plasmid_name": "pGLTR-FP-GFP", "sequence-type": "depositor-full", "addgene_id": "58242", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "att_sites": [ "attR1", @@ -180387,7 +191275,10 @@ "plasmid_name": "pMEsnx5P1gfp", "sequence-type": "addgene-full", "addgene_id": "90131", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL1", @@ -180424,7 +191315,10 @@ "plasmid_name": "pCAG/ATP9A-HA", "sequence-type": "addgene-full", "addgene_id": "209213", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -180469,7 +191363,10 @@ "plasmid_name": "pDONR223 LC3A no-stop", "sequence-type": "addgene-full", "addgene_id": "123204", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123204.addgene-full.gb" }, @@ -180478,7 +191375,10 @@ "plasmid_name": "pME-Cas9", "sequence-type": "addgene-full", "addgene_id": "63154", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.01.032", + "https://www.ncbi.nlm.nih.gov/pubmed/25752963" + ], "kit": null, "att_sites": [ "attL1", @@ -180513,7 +191413,6 @@ "plasmid_name": "pENTR-L4R1-CAG", "sequence-type": "addgene-full", "addgene_id": "139522", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -180549,7 +191448,10 @@ "plasmid_name": "TFORF3530", "sequence-type": "depositor-full", "addgene_id": "145006", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -180609,7 +191511,6 @@ "plasmid_name": "p667-UBC-hcRed-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135237", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -180675,7 +191576,10 @@ "plasmid_name": "pDEST-mCherry-LacR-BRCA1 1366-1437", "sequence-type": "depositor-full", "addgene_id": "71118", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1", @@ -180722,7 +191626,10 @@ "plasmid_name": "pDONR223_NFE2L2_WT", "sequence-type": "addgene-full", "addgene_id": "81259", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -180751,7 +191658,6 @@ "plasmid_name": "R777-E196 Hs.PRKAB1-nostop", "sequence-type": "depositor-full", "addgene_id": "70480", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -180779,7 +191685,10 @@ "plasmid_name": "pAG413GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14333", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -180841,7 +191750,10 @@ "plasmid_name": "pGC319", "sequence-type": "depositor-full", "addgene_id": "19677", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR3", @@ -180882,7 +191794,6 @@ "plasmid_name": "pLEX307-FURIN-puro", "sequence-type": "addgene-full", "addgene_id": "158460", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -180943,7 +191854,10 @@ "plasmid_name": "pDONR221_SLC35F5", "sequence-type": "addgene-full", "addgene_id": "132085", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -180974,7 +191888,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::B1-NLSLacZ-B2", "sequence-type": "addgene-full", "addgene_id": "186413", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attB1", @@ -181022,7 +191939,10 @@ "plasmid_name": "pHAGE-STK31", "sequence-type": "addgene-full", "addgene_id": "116796", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -181072,7 +191992,10 @@ "plasmid_name": "pENTR221-mCherry", "sequence-type": "addgene-full", "addgene_id": "79509", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -181106,7 +192029,10 @@ "plasmid_name": "pHAGE-HTATSF1__BRS3", "sequence-type": "addgene-full", "addgene_id": "116822", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -181157,7 +192083,10 @@ "plasmid_name": "R701-X54-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) G12D", "sequence-type": "addgene-full", "addgene_id": "159562", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -181204,7 +192133,10 @@ "plasmid_name": "pRQ-Id1HA", "sequence-type": "depositor-full", "addgene_id": "18112", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0801505105", + "https://www.ncbi.nlm.nih.gov/pubmed/18378907" + ], "kit": null, "att_sites": [ "attB1", @@ -181250,7 +192182,10 @@ "plasmid_name": "pg-dsRedXP-HIF-2alpha", "sequence-type": "addgene-full", "addgene_id": "87209", - "references": [], + "references": [ + "https://doi.org/10.1098/rsob.160195", + "https://www.ncbi.nlm.nih.gov/pubmed/27655733" + ], "kit": null, "att_sites": [ "attB1", @@ -181293,7 +192228,10 @@ "plasmid_name": "p3E DN Kif5a", "sequence-type": "addgene-full", "addgene_id": "105973", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21206", + "https://www.ncbi.nlm.nih.gov/pubmed/26879757" + ], "kit": null, "att_sites": [ "attL3", @@ -181323,7 +192261,10 @@ "plasmid_name": "PB-hEF1a-MG", "sequence-type": "addgene-full", "addgene_id": "175504", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -181366,7 +192307,10 @@ "plasmid_name": "R713-M91-303: CMV51p> Halotag-Hs.NRAS", "sequence-type": "addgene-full", "addgene_id": "159682", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "att_sites": [ "attB1", @@ -181423,7 +192367,10 @@ "plasmid_name": "pDONR223-PRKAR2B", "sequence-type": "addgene-full", "addgene_id": "23667", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -181455,7 +192402,10 @@ "plasmid_name": "pENTR1A hu_ncOGT WT (open N-term)", "sequence-type": "addgene-full", "addgene_id": "155197", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "att_sites": [ "attL1", @@ -181479,7 +192429,10 @@ "plasmid_name": "pDONR221-Cka2", "sequence-type": "addgene-full", "addgene_id": "99980", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attL1", @@ -181510,7 +192463,10 @@ "plasmid_name": "pHAGE-PIK3CA-E469delinsDK", "sequence-type": "addgene-full", "addgene_id": "116476", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -181564,7 +192520,10 @@ "plasmid_name": "pAC150-FAM134C-GFP", "sequence-type": "addgene-full", "addgene_id": "201932", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "att_sites": [ "attB1", @@ -181622,7 +192581,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 M", "sequence-type": "addgene-full", "addgene_id": "141274", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -181646,7 +192608,10 @@ "plasmid_name": "pLgw NKX2-5Y191C-V5-EcoDam", "sequence-type": "addgene-full", "addgene_id": "98599", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attB1", @@ -181699,7 +192664,6 @@ "plasmid_name": "pDEST2T18ms", "sequence-type": "depositor-full", "addgene_id": "72647", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -181740,7 +192704,10 @@ "plasmid_name": "pDL2", "sequence-type": "addgene-full", "addgene_id": "175884", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -181771,7 +192738,6 @@ "plasmid_name": "R777-E070 Hs.EXOC2-nostop", "sequence-type": "depositor-full", "addgene_id": "70354", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -181799,7 +192765,10 @@ "plasmid_name": "pENTR-L3-Csy4-Cas9-L2", "sequence-type": "addgene-full", "addgene_id": "141040", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -181829,7 +192798,10 @@ "plasmid_name": "pSGE_710_S2-2-twi_dCP", "sequence-type": "depositor-full", "addgene_id": "71156", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -181862,7 +192834,10 @@ "plasmid_name": "pHAGE-PTPN11-E76Q", "sequence-type": "addgene-full", "addgene_id": "116642", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -181916,7 +192891,10 @@ "plasmid_name": "pGC320", "sequence-type": "depositor-full", "addgene_id": "19639", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -181957,7 +192935,10 @@ "plasmid_name": "pDONR223-ZNF30", "sequence-type": "addgene-full", "addgene_id": "88681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -181986,7 +192967,10 @@ "plasmid_name": "pGWB523", "sequence-type": "depositor-full", "addgene_id": "74865", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -182036,7 +193020,10 @@ "plasmid_name": "pSLIK_Hyg_mTurquoise2_Atg4BC74A", "sequence-type": "addgene-full", "addgene_id": "161733", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2229-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32376951" + ], "kit": null, "att_sites": [ "attB1", @@ -182105,7 +193092,9 @@ "plasmid_name": "pDONR207-mTalin", "sequence-type": "addgene-full", "addgene_id": "100591", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27703856" + ], "kit": null, "att_sites": [ "attL1", @@ -182129,7 +193118,10 @@ "plasmid_name": "pDest-669 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161887", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -182193,7 +193185,10 @@ "plasmid_name": "pDONR223_B2M_p.Y30H", "sequence-type": "addgene-full", "addgene_id": "81316", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -182225,7 +193220,10 @@ "plasmid_name": "pCFJ2370 - intron GG3 - 250bp", "sequence-type": "addgene-full", "addgene_id": "159879", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -182256,7 +193254,10 @@ "plasmid_name": "MAC_N_IRF8", "sequence-type": "addgene-full", "addgene_id": "167763", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -182301,7 +193302,10 @@ "plasmid_name": "pDONR223-PFKM", "sequence-type": "addgene-full", "addgene_id": "23728", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -182333,7 +193337,10 @@ "plasmid_name": "pHAGE-PIK3CA-R93P", "sequence-type": "addgene-full", "addgene_id": "116539", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -182387,7 +193394,10 @@ "plasmid_name": "pHAGE TRE dCas9-VP64", "sequence-type": "addgene-full", "addgene_id": "50916", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.103341", + "https://www.ncbi.nlm.nih.gov/pubmed/24346702" + ], "kit": null, "att_sites": [ "attB1", @@ -182446,7 +193456,10 @@ "plasmid_name": "pDONR221_SLC28A3", "sequence-type": "addgene-full", "addgene_id": "132151", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -182477,7 +193490,6 @@ "plasmid_name": "DDX3X - A501E in pENTR", "sequence-type": "addgene-full", "addgene_id": "216583", - "references": [], "kit": null, "file": "data/addgene_plasmids/216583.addgene-full.gb" }, @@ -182486,7 +193498,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(D256A)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128677", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -182536,7 +193551,6 @@ "plasmid_name": "R777-E349 Hs.TIAM2", "sequence-type": "depositor-full", "addgene_id": "70633", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -182565,7 +193579,10 @@ "plasmid_name": "pAG426GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14180", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -182627,7 +193644,10 @@ "plasmid_name": "Silene_conica _PheRS_PlastidTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202660", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "att_sites": [ "attB1", @@ -182666,7 +193686,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-V12-puro", "sequence-type": "addgene-full", "addgene_id": "156171", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -182726,7 +193749,10 @@ "plasmid_name": "pDONR223_PRKACB_WT", "sequence-type": "addgene-full", "addgene_id": "82224", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -182755,7 +193781,10 @@ "plasmid_name": "pGL4_EGR1p-BC1489-luc2", "sequence-type": "addgene-full", "addgene_id": "214653", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -182798,7 +193827,10 @@ "plasmid_name": "pENTR223-BLRF2", "sequence-type": "addgene-full", "addgene_id": "195776", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -182827,7 +193859,10 @@ "plasmid_name": "pDestTol2CG2-mnx1:ReaChR-citrine", "sequence-type": "addgene-full", "addgene_id": "169046", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2020.05.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32516597" + ], "kit": null, "att_sites": [ "attB1", @@ -182867,7 +193902,10 @@ "plasmid_name": "pDONR221-SLC35G6_STOP", "sequence-type": "addgene-full", "addgene_id": "161262", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -182898,7 +193936,10 @@ "plasmid_name": "pDONR223_SPOP_p.K134N", "sequence-type": "addgene-full", "addgene_id": "81647", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -182930,7 +193971,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-ERN2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189905", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -182996,7 +194036,10 @@ "plasmid_name": "CCNT1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98328", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -183056,7 +194099,10 @@ "plasmid_name": "TFORF2997", "sequence-type": "addgene-full", "addgene_id": "144473", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -183116,7 +194162,10 @@ "plasmid_name": "pLenti-sgRNA-Lib", "sequence-type": "addgene-full", "addgene_id": "53121", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13166", + "https://www.ncbi.nlm.nih.gov/pubmed/24717434" + ], "kit": null, "att_sites": [ "attR1", @@ -183166,7 +194215,10 @@ "plasmid_name": "BAF-S4A-tet-puro", "sequence-type": "addgene-full", "addgene_id": "199649", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "file": "data/addgene_plasmids/199649.addgene-full.gb" }, @@ -183175,7 +194227,10 @@ "plasmid_name": "DDX24", "sequence-type": "addgene-full", "addgene_id": "155512", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -183219,7 +194274,10 @@ "plasmid_name": "Ad-FOXO1 1-456", "sequence-type": "addgene-full", "addgene_id": "131532", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "att_sites": [ "attB1", @@ -183256,7 +194314,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp1", "sequence-type": "addgene-full", "addgene_id": "168841", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -183285,7 +194346,10 @@ "plasmid_name": "p3E-ML1N*2(7Q)", "sequence-type": "depositor-full", "addgene_id": "67679", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attL3", @@ -183316,7 +194380,10 @@ "plasmid_name": "TFORF3351", "sequence-type": "addgene-full", "addgene_id": "144827", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -183376,7 +194443,10 @@ "plasmid_name": "pHAGE-EGFR-V292M", "sequence-type": "addgene-full", "addgene_id": "116313", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -183426,7 +194496,10 @@ "plasmid_name": "pDONR221_SLC24A2", "sequence-type": "addgene-full", "addgene_id": "131966", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -183457,7 +194530,10 @@ "plasmid_name": "TFORF3317", "sequence-type": "addgene-full", "addgene_id": "144793", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -183517,7 +194593,10 @@ "plasmid_name": "pENTR-R4r-LucmiR-EGFP-R3r", "sequence-type": "depositor-full", "addgene_id": "32589", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attR3", @@ -183556,7 +194635,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Centrin2", "sequence-type": "addgene-full", "addgene_id": "136834", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -183599,7 +194681,10 @@ "plasmid_name": "pDONR221-SLC25A28_STOP", "sequence-type": "addgene-full", "addgene_id": "161182", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -183630,7 +194715,6 @@ "plasmid_name": "pSCM167-Flag-hSFRP1(aa181-314)", "sequence-type": "addgene-full", "addgene_id": "189551", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -183682,7 +194766,10 @@ "plasmid_name": "pDONR223_IDH2_p.R188W", "sequence-type": "addgene-full", "addgene_id": "82775", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -183711,7 +194798,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-wt", "sequence-type": "depositor-full", "addgene_id": "46719", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -183761,7 +194851,10 @@ "plasmid_name": "MLKS2delARMexp", "sequence-type": "addgene-full", "addgene_id": "130864", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "att_sites": [ "attB1", @@ -183797,7 +194890,10 @@ "plasmid_name": "pDONR221-MFSD6_STOP", "sequence-type": "addgene-full", "addgene_id": "161119", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -183828,7 +194924,10 @@ "plasmid_name": "pHAGE-FGFR3-V172I", "sequence-type": "addgene-full", "addgene_id": "116388", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -183882,7 +194981,10 @@ "plasmid_name": "TFORF3232", "sequence-type": "addgene-full", "addgene_id": "144708", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -183942,7 +195044,10 @@ "plasmid_name": "EXOSC10", "sequence-type": "addgene-full", "addgene_id": "155589", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -183985,7 +195090,6 @@ "plasmid_name": "pDONR221-W279A-long-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192095", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -184016,7 +195120,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-emiRFP703-RfA", "sequence-type": "addgene-full", "addgene_id": "186376", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -184060,7 +195163,9 @@ "plasmid_name": "iTol2Amp-\u03b3-crystallin:RFP", "sequence-type": "addgene-full", "addgene_id": "108455", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29382818" + ], "kit": null, "att_sites": [ "attL1", @@ -184103,7 +195208,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP12", "sequence-type": "addgene-full", "addgene_id": "154410", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -184133,7 +195241,9 @@ "plasmid_name": "pME-Sun1-2xsfGFP-6xMYC-pA (JDW 681)", "sequence-type": "addgene-full", "addgene_id": "224489", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -184169,7 +195279,10 @@ "plasmid_name": "pFRT_TO_FlagHA_TIAL1", "sequence-type": "addgene-full", "addgene_id": "106090", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "att_sites": [ "attB1", @@ -184214,7 +195327,10 @@ "plasmid_name": "TFORF3492", "sequence-type": "addgene-full", "addgene_id": "144968", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144968.addgene-full.gb" }, @@ -184223,7 +195339,10 @@ "plasmid_name": "pAFMW-Nbr[C399-625]", "sequence-type": "addgene-full", "addgene_id": "188587", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -184253,7 +195372,10 @@ "plasmid_name": "pJA255", "sequence-type": "depositor-full", "addgene_id": "21508", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "att_sites": [ "attL4", @@ -184285,7 +195407,10 @@ "plasmid_name": "LC501: pMVP (L3-L2) mCherry + polyA", "sequence-type": "addgene-full", "addgene_id": "121765", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -184321,7 +195446,10 @@ "plasmid_name": "pAAV_8xTEAD_luc2", "sequence-type": "addgene-full", "addgene_id": "173005", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/173005.addgene-full.gb" }, @@ -184330,7 +195458,6 @@ "plasmid_name": "pEF 1-E8-4", "sequence-type": "depositor-full", "addgene_id": "20090", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -184361,7 +195488,10 @@ "plasmid_name": "pDONR223_EGFR_p.G719D", "sequence-type": "addgene-full", "addgene_id": "81708", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -184394,7 +195524,9 @@ "plasmid_name": "pMpGWB332", "sequence-type": "depositor-full", "addgene_id": "68660", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -184440,7 +195572,10 @@ "plasmid_name": "pECIA2", "sequence-type": "depositor-full", "addgene_id": "47032", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.06.006", + "https://www.ncbi.nlm.nih.gov/pubmed/23827685" + ], "kit": null, "att_sites": [ "attR1", @@ -184487,7 +195622,10 @@ "plasmid_name": "pAG304GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14207", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -184546,7 +195684,10 @@ "plasmid_name": "pMOS019E: Entry vector for: ClopHensorN chloride sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163066", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -184585,7 +195726,10 @@ "plasmid_name": "pJAK2.D", "sequence-type": "depositor-full", "addgene_id": "29465", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2009.07.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19647016" + ], "kit": null, "att_sites": [ "attR1", @@ -184613,7 +195757,9 @@ "plasmid_name": "p3E-P2A-MCS no-pA", "sequence-type": "depositor-full", "addgene_id": "80825", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -184650,7 +195796,10 @@ "plasmid_name": "pHAGE-BMPR2-Q6*", "sequence-type": "addgene-full", "addgene_id": "116127", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -184704,7 +195853,10 @@ "plasmid_name": "pCZGY2850", "sequence-type": "addgene-full", "addgene_id": "87758", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attB1", @@ -184744,7 +195896,10 @@ "plasmid_name": "pDONR223_COPS2_WT", "sequence-type": "addgene-full", "addgene_id": "81793", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -184756,7 +195911,6 @@ "plasmid_name": "p41Nat 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58546", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -184812,7 +195966,10 @@ "plasmid_name": "Lenti-CMV-PRB", "sequence-type": "addgene-full", "addgene_id": "206165", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "att_sites": [ "attB1", @@ -184873,7 +196030,10 @@ "plasmid_name": "dpYPQ230-D156R-CBE2", "sequence-type": "addgene-full", "addgene_id": "195368", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "att_sites": [ "attL1", @@ -184906,7 +196066,10 @@ "plasmid_name": "pDONR223_SLC2A3_p.F88S", "sequence-type": "addgene-full", "addgene_id": "81473", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -184938,7 +196101,10 @@ "plasmid_name": "pDONR221-MFSD10_STOP", "sequence-type": "addgene-full", "addgene_id": "161056", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -184969,7 +196135,10 @@ "plasmid_name": "actc1b-mKate2-Rab31", "sequence-type": "addgene-full", "addgene_id": "109763", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109763.addgene-full.gb" }, @@ -184978,7 +196147,10 @@ "plasmid_name": "pENTR4-Cas9-V5", "sequence-type": "addgene-full", "addgene_id": "87905", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "att_sites": [ "attL1", @@ -185005,7 +196177,10 @@ "plasmid_name": "API5_pLX307", "sequence-type": "addgene-full", "addgene_id": "98315", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -185065,7 +196240,6 @@ "plasmid_name": "R777-E100 Hs.GRB2-nostop", "sequence-type": "depositor-full", "addgene_id": "70384", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -185093,7 +196267,10 @@ "plasmid_name": "pLenti-EmGFP-LATS2/1 KD", "sequence-type": "addgene-full", "addgene_id": "52085", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.01346-13", + "https://www.ncbi.nlm.nih.gov/pubmed/24550007" + ], "kit": null, "att_sites": [ "attB1", @@ -185155,7 +196332,9 @@ "plasmid_name": "pDRFLIP36", "sequence-type": "depositor-full", "addgene_id": "65514", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -185208,7 +196387,10 @@ "plasmid_name": "pBVboostFGII WPRE 3C-CVB3", "sequence-type": "addgene-full", "addgene_id": "202077", - "references": [], + "references": [ + "https://doi.org/10.1128/spectrum.05352-22", + "https://www.ncbi.nlm.nih.gov/pubmed/37227147" + ], "kit": null, "att_sites": [ "attB1", @@ -185261,7 +196443,10 @@ "plasmid_name": "pSGE_881_Nhe2_EcR-to-HLH4C", "sequence-type": "depositor-full", "addgene_id": "71186", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -185294,7 +196479,10 @@ "plasmid_name": "pMuLE ENTR SV40 mCherry L5-L2", "sequence-type": "depositor-full", "addgene_id": "62149", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -185331,7 +196519,10 @@ "plasmid_name": "pDONR223_AKT1_p.D323Y", "sequence-type": "addgene-full", "addgene_id": "82867", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -185361,7 +196552,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep27", "sequence-type": "addgene-full", "addgene_id": "136809", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -185406,7 +196600,10 @@ "plasmid_name": "pDONR\u2122221_RBPMS2", "sequence-type": "depositor-full", "addgene_id": "59389", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.045005.114", + "https://www.ncbi.nlm.nih.gov/pubmed/24860013" + ], "kit": null, "att_sites": [ "attL1", @@ -185436,7 +196633,10 @@ "plasmid_name": "pDONR221-SLC16A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161124", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -185467,7 +196667,10 @@ "plasmid_name": "pDONR223_FAM173B_p.R187P", "sequence-type": "addgene-full", "addgene_id": "82748", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -185496,7 +196699,10 @@ "plasmid_name": "pDONR223_KIF2B_p.R504Q", "sequence-type": "addgene-full", "addgene_id": "81501", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -185528,7 +196734,10 @@ "plasmid_name": "pEXPqcxip-hCCDC47-FLAG", "sequence-type": "addgene-full", "addgene_id": "159141", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2011.06.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21903422" + ], "kit": null, "att_sites": [ "attB1", @@ -185572,7 +196781,10 @@ "plasmid_name": "pDON223 Spike K417N", "sequence-type": "addgene-full", "addgene_id": "180060", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -185601,7 +196813,10 @@ "plasmid_name": "actc1b-mKate2-rab22a", "sequence-type": "addgene-full", "addgene_id": "109611", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -185643,7 +196858,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp10", "sequence-type": "depositor-full", "addgene_id": "168959", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -185672,7 +196890,10 @@ "plasmid_name": "TFORF3405", "sequence-type": "addgene-full", "addgene_id": "144881", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -185732,7 +196953,10 @@ "plasmid_name": "pAG423GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14150", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -185792,7 +197016,6 @@ "plasmid_name": "Hs.NRAS Q61R", "sequence-type": "depositor-full", "addgene_id": "83179", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -185817,7 +197040,10 @@ "plasmid_name": "W118-1_hZBTB7B", "sequence-type": "addgene-full", "addgene_id": "180380", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "att_sites": [ "attB1", @@ -185880,7 +197106,10 @@ "plasmid_name": "pCFJ908", "sequence-type": "depositor-full", "addgene_id": "44474", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attR3", @@ -185914,7 +197143,10 @@ "plasmid_name": "pPN10-gCTG", "sequence-type": "addgene-full", "addgene_id": "114385", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms13272", + "https://www.ncbi.nlm.nih.gov/pubmed/27827362" + ], "kit": null, "att_sites": [ "attB2" @@ -185962,7 +197194,10 @@ "plasmid_name": "pDONR221-ZNF534", "sequence-type": "depositor-full", "addgene_id": "101449", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -185993,7 +197228,10 @@ "plasmid_name": "pKG-GW2-MaUPPS-B", "sequence-type": "addgene-full", "addgene_id": "203175", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M117.806034", + "https://www.ncbi.nlm.nih.gov/pubmed/28842490" + ], "kit": null, "att_sites": [ "attB1", @@ -186024,7 +197262,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF8b_stop", "sequence-type": "addgene-full", "addgene_id": "168567", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -186053,7 +197294,10 @@ "plasmid_name": "pLEX305_FKBP12F36V-SHOC2", "sequence-type": "addgene-full", "addgene_id": "134522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.08.090", + "https://www.ncbi.nlm.nih.gov/pubmed/31577942" + ], "kit": null, "att_sites": [ "attB1", @@ -186113,7 +197357,10 @@ "plasmid_name": "pHAGE-EGFR-H47Y", "sequence-type": "addgene-full", "addgene_id": "116261", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -186163,7 +197410,10 @@ "plasmid_name": "TFORF3479", "sequence-type": "addgene-full", "addgene_id": "144955", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -186223,7 +197473,10 @@ "plasmid_name": "R620-M05-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-541)-His6 K417N/E484K/N501Y", "sequence-type": "addgene-full", "addgene_id": "170191", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -186277,7 +197530,10 @@ "plasmid_name": "pDONR223_AKR1B1_WT", "sequence-type": "addgene-full", "addgene_id": "82928", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -186306,7 +197562,10 @@ "plasmid_name": "JA001: pMVP (L3-L2) FLAG epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121758", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -186341,7 +197600,9 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ashL344P-mKate2-splitmVenusN", "sequence-type": "depositor-full", "addgene_id": "69586", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "att_sites": [ "attB1", @@ -186407,7 +197668,10 @@ "plasmid_name": "pMuLE ENTR 7SK L5-L4", "sequence-type": "depositor-full", "addgene_id": "62107", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL4", @@ -186438,7 +197702,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK8_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189877", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -186504,7 +197767,10 @@ "plasmid_name": "pDONR223_MEF2C_WT", "sequence-type": "addgene-full", "addgene_id": "81735", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -186536,7 +197802,10 @@ "plasmid_name": "pCG144", "sequence-type": "depositor-full", "addgene_id": "21376", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -186559,7 +197828,10 @@ "plasmid_name": "pDONR223_EDNRB_WT", "sequence-type": "addgene-full", "addgene_id": "81881", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -186591,7 +197863,10 @@ "plasmid_name": "p{Mhc-F4-678-GFP::KD-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182184", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -186635,7 +197910,10 @@ "plasmid_name": "pDONR221-SLC35G2_STOP", "sequence-type": "addgene-full", "addgene_id": "161310", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -186666,7 +197944,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp5", "sequence-type": "addgene-full", "addgene_id": "168933", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -186695,7 +197976,10 @@ "plasmid_name": "pHAGE-BRAF-L613F", "sequence-type": "addgene-full", "addgene_id": "116181", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -186750,7 +198034,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP1_nostop", "sequence-type": "addgene-full", "addgene_id": "168687", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -186779,7 +198066,10 @@ "plasmid_name": "pLEX307-IBV-3CL-C143A", "sequence-type": "addgene-full", "addgene_id": "160289", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -186839,7 +198129,10 @@ "plasmid_name": "pEX-CMV-SP-YFP-STM2(15-746AA)-EF hand 3 mut (K83A,D84N,G86D)", "sequence-type": "depositor-full", "addgene_id": "20174", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "att_sites": [ "attB1", @@ -186882,7 +198175,10 @@ "plasmid_name": "TFORF3025", "sequence-type": "addgene-full", "addgene_id": "144501", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -186943,7 +198239,6 @@ "plasmid_name": "pHAGE pGK LysoFlux (HaloTag7-mGFP-Galectin3)", "sequence-type": "addgene-full", "addgene_id": "215009", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -187009,7 +198304,10 @@ "plasmid_name": "mitoTALECD for_atp1_1397NC", "sequence-type": "addgene-full", "addgene_id": "186204", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2121177119", + "https://www.ncbi.nlm.nih.gov/pubmed/35561225" + ], "kit": null, "att_sites": [ "attB1", @@ -187055,7 +198353,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP14_nostop", "sequence-type": "addgene-full", "addgene_id": "149316", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -187084,7 +198385,6 @@ "plasmid_name": "LO601: pMVP (R4-R3) destabilized firefly luciferase (Luc2P)", "sequence-type": "addgene-full", "addgene_id": "132926", - "references": [], "kit": null, "att_sites": [ "attB4", @@ -187117,7 +198417,10 @@ "plasmid_name": "pCZGY2839", "sequence-type": "addgene-full", "addgene_id": "87765", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attB1", @@ -187149,7 +198452,10 @@ "plasmid_name": "LC301: pMVP/PB/Zeo-DEST", "sequence-type": "addgene-full", "addgene_id": "121877", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -187191,7 +198497,6 @@ "plasmid_name": "Hs.KRAS4b S181D", "sequence-type": "depositor-full", "addgene_id": "83137", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -187220,7 +198525,9 @@ "plasmid_name": "pAG416GAL-ccdB-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166139", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attR1", @@ -187277,7 +198584,9 @@ "plasmid_name": "pMpGWB125", "sequence-type": "depositor-full", "addgene_id": "68579", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -187326,7 +198635,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a O", "sequence-type": "addgene-full", "addgene_id": "89384", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -187380,7 +198692,9 @@ "plasmid_name": "pMpGWB304", "sequence-type": "depositor-full", "addgene_id": "68632", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -187427,7 +198741,10 @@ "plasmid_name": "mKate2-P2A-APEX2-ML1N*2", "sequence-type": "depositor-full", "addgene_id": "67665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -187472,7 +198789,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF10wu", "sequence-type": "addgene-full", "addgene_id": "149332", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -187501,7 +198821,10 @@ "plasmid_name": "pUBQ10:LLFLS2-1", "sequence-type": "addgene-full", "addgene_id": "202187", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "file": "data/addgene_plasmids/202187.addgene-full.gb" }, @@ -187510,7 +198833,10 @@ "plasmid_name": "pAG304GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14255", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -187522,7 +198848,6 @@ "plasmid_name": "pENTRY4_ OBfold", "sequence-type": "addgene-full", "addgene_id": "126901", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -187557,7 +198882,10 @@ "plasmid_name": "pDONR223_GTF2A2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82997", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -187586,7 +198914,10 @@ "plasmid_name": "JL202: pMVP/mCherry-DEST", "sequence-type": "addgene-full", "addgene_id": "121853", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -187631,7 +198962,10 @@ "plasmid_name": "dpYPQ230-D156R-ABE5", "sequence-type": "addgene-full", "addgene_id": "195371", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "att_sites": [ "attL1", @@ -187663,7 +198997,10 @@ "plasmid_name": "pENTR-TMEM144", "sequence-type": "addgene-full", "addgene_id": "221426", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -187693,7 +199030,10 @@ "plasmid_name": "pDONR 221-BPC4 (STOP)", "sequence-type": "addgene-full", "addgene_id": "118680", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attL1", @@ -187724,7 +199064,10 @@ "plasmid_name": "p7274 MSCV-P C-FlagHA 16 \u2206DLYC", "sequence-type": "addgene-full", "addgene_id": "163304", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1819534116", + "https://www.ncbi.nlm.nih.gov/pubmed/30894485" + ], "kit": null, "att_sites": [ "attB1", @@ -187770,7 +199113,9 @@ "plasmid_name": "pDONR221-MARK4(v2)", "sequence-type": "addgene-full", "addgene_id": "166186", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -187801,7 +199146,10 @@ "plasmid_name": "TFORF3495", "sequence-type": "addgene-full", "addgene_id": "144971", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -187861,7 +199209,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-2", "sequence-type": "depositor-full", "addgene_id": "46705", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -187911,7 +199262,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp8", "sequence-type": "addgene-full", "addgene_id": "168917", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -187940,7 +199294,10 @@ "plasmid_name": "pME-2PH-PLCd", "sequence-type": "depositor-full", "addgene_id": "71283", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attL1", @@ -187972,7 +199329,10 @@ "plasmid_name": "TFORF3049", "sequence-type": "addgene-full", "addgene_id": "144525", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -188032,7 +199392,10 @@ "plasmid_name": "CDC40", "sequence-type": "addgene-full", "addgene_id": "155444", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155444.addgene-full.gb" }, @@ -188041,7 +199404,10 @@ "plasmid_name": "pDONR223_MTM1_p.D298E", "sequence-type": "addgene-full", "addgene_id": "81711", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -188073,7 +199439,10 @@ "plasmid_name": "pCLX-UBI-mCherry", "sequence-type": "addgene-full", "addgene_id": "114275", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.01.061", + "https://www.ncbi.nlm.nih.gov/pubmed/25732825" + ], "kit": null, "att_sites": [ "attB1", @@ -188127,7 +199496,10 @@ "plasmid_name": "pCXLE-gw", "sequence-type": "depositor-full", "addgene_id": "37626", - "references": [], + "references": [ + "https://doi.org/10.1002/stem.1293", + "https://www.ncbi.nlm.nih.gov/pubmed/23193063" + ], "kit": null, "att_sites": [ "attR1", @@ -188174,7 +199546,9 @@ "plasmid_name": "p5E 5X C120 c-fos min pro (JDW 1241)", "sequence-type": "addgene-full", "addgene_id": "224544", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -188210,7 +199584,10 @@ "plasmid_name": "pSLIK_neo_3xflag_CHEK2", "sequence-type": "addgene-full", "addgene_id": "136536", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attB1", @@ -188278,7 +199655,10 @@ "plasmid_name": "HSPB1", "sequence-type": "addgene-full", "addgene_id": "155670", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -188321,7 +199701,10 @@ "plasmid_name": "TFORF3235", "sequence-type": "addgene-full", "addgene_id": "144711", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -188381,7 +199764,10 @@ "plasmid_name": "pENTR1A_Mavs (open)", "sequence-type": "addgene-full", "addgene_id": "160099", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attL1", @@ -188406,7 +199792,10 @@ "plasmid_name": "actc1b-mKate2-rab3aa", "sequence-type": "addgene-full", "addgene_id": "109635", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -188448,7 +199837,10 @@ "plasmid_name": "pHAGE-FGFR4-K157N", "sequence-type": "addgene-full", "addgene_id": "116391", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -188498,7 +199890,10 @@ "plasmid_name": "pDONR221-SLC16A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161100", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -188529,7 +199924,10 @@ "plasmid_name": "pDONR223_KEAP1_p.T142M", "sequence-type": "addgene-full", "addgene_id": "81525", - 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"references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -188687,7 +200096,10 @@ "plasmid_name": "pGWT35S-AtTIM21(1-50aa)-mCherry", "sequence-type": "addgene-full", "addgene_id": "194047", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "att_sites": [ "attB1", @@ -188732,7 +200144,6 @@ "plasmid_name": "pAM-35s-CIPK5-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102392", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -188766,7 +200177,10 @@ "plasmid_name": "EXOSC2", "sequence-type": "addgene-full", "addgene_id": "155590", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -188809,7 +200223,10 @@ "plasmid_name": "pLenti CMV Hygro dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134732", - 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"references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -189513,7 +200970,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 N2_stop", "sequence-type": "addgene-full", "addgene_id": "168605", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -189542,7 +201002,6 @@ "plasmid_name": "pLenti UBC MitoFlux (pSu9-HaloTag7-mGFP-STOP)", "sequence-type": "addgene-full", "addgene_id": "215010", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -189608,7 +201067,10 @@ "plasmid_name": "pDEST17-UbE2R2", "sequence-type": "addgene-full", "addgene_id": "15806", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "att_sites": [ "attB1", @@ -189640,7 +201102,10 @@ "plasmid_name": "plenti-px330-CRBN-T1-pGK-Pur", "sequence-type": "addgene-full", "addgene_id": "107382", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -189694,7 +201159,10 @@ "plasmid_name": "TFORF3187", "sequence-type": "addgene-full", "addgene_id": "144663", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -189754,7 +201222,10 @@ "plasmid_name": "pLX304 ERG R367K", "sequence-type": "addgene-full", "addgene_id": "118626", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.06.040", + "https://www.ncbi.nlm.nih.gov/pubmed/30078722" + ], "kit": null, "att_sites": [ "attB1", @@ -189813,7 +201284,6 @@ "plasmid_name": "R777-E114 Hs.JUN-nostop", "sequence-type": "depositor-full", "addgene_id": "70398", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -189842,7 +201312,10 @@ "plasmid_name": "pDONR221_SLC12A1", "sequence-type": "addgene-full", "addgene_id": "131896", - 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"references": [], + "references": [ + "https://doi.org/10.1111/tpj.13446", + "https://www.ncbi.nlm.nih.gov/pubmed/27943461" + ], "kit": null, "att_sites": [ "attL2", @@ -190018,7 +201503,9 @@ "plasmid_name": "p3E-Dam-myc no-pA", "sequence-type": "depositor-full", "addgene_id": "82600", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -190050,7 +201537,10 @@ "plasmid_name": "IKKalpha (S176E,S180E)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64608", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attB1", @@ -190109,7 +201599,6 @@ "plasmid_name": "Hs.KRAS4b G12D/C185S", "sequence-type": "depositor-full", "addgene_id": "83165", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -190136,7 +201625,10 @@ "plasmid_name": "JN402: pMVP (R4-R3) Firefly Luciferase", "sequence-type": "addgene-full", "addgene_id": "121741", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -190168,7 +201660,10 @@ "plasmid_name": "pDONR223_SHC1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82931", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -190197,7 +201692,10 @@ "plasmid_name": "R620-M01-303: CMV51p> SARS-CoV-2 S(1-1208)-2P-T4f-3C-His8-Strep2x2 B.1.1.7", "sequence-type": "addgene-full", "addgene_id": "170188", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -190253,7 +201751,10 @@ "plasmid_name": "pHAGE-EGFR-M178I", "sequence-type": "addgene-full", "addgene_id": "116278", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -190303,7 +201804,10 @@ "plasmid_name": "TFORF3042", "sequence-type": "addgene-full", "addgene_id": "144518", - 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"references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -191462,7 +203045,10 @@ "plasmid_name": "pEBTet-SNAP-KIAA0841", "sequence-type": "addgene-full", "addgene_id": "136810", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -191509,7 +203095,10 @@ "plasmid_name": "pLenti-CMVSP6-NR2F2-SV40-PURO", "sequence-type": "addgene-full", "addgene_id": "138361", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attB1", @@ -191574,7 +203163,10 @@ "plasmid_name": "MiniCoopR mitfa:BRAF", "sequence-type": "addgene-full", "addgene_id": "118846", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -191612,7 +203204,10 @@ "plasmid_name": "TFORF3327", "sequence-type": "addgene-full", "addgene_id": "144803", - 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"references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -192654,7 +204308,10 @@ "plasmid_name": "pGW-GOI-TurboID", "sequence-type": "addgene-full", "addgene_id": "209378", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "att_sites": [ "attR1", @@ -192703,7 +204360,10 @@ "plasmid_name": "pHAGE-PIK3R1-E160*", "sequence-type": "addgene-full", "addgene_id": "116586", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -192755,7 +204415,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aac", "sequence-type": "addgene-full", "addgene_id": "129685", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL2", @@ -192785,7 +204448,10 @@ "plasmid_name": "R989-X05-566: His6-MBP-tev-G-Hs.KRAS4b(1-188)", "sequence-type": "addgene-full", "addgene_id": "159546", - 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"references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -193009,7 +204682,10 @@ "plasmid_name": "pAG413GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14285", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -193071,7 +204747,10 @@ "plasmid_name": "pHAGE-AKAP13__RET", "sequence-type": "addgene-full", "addgene_id": "116806", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -193122,7 +204801,10 @@ "plasmid_name": "pENTR-KAT14-1-546", "sequence-type": "addgene-full", "addgene_id": "118377", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attL1", @@ -193153,7 +204835,10 @@ "plasmid_name": "pDR-GW AT1.03YEMK", "sequence-type": "addgene-full", "addgene_id": "28004", - 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"references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -193403,7 +205100,6 @@ "plasmid_name": "p3E p2a-turquoise2", "sequence-type": "addgene-full", "addgene_id": "135213", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -193439,7 +205135,10 @@ "plasmid_name": "pDestTol2pACryGFP", "sequence-type": "addgene-full", "addgene_id": "64022", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22385", + "https://www.ncbi.nlm.nih.gov/pubmed/23444339" + ], "kit": null, "att_sites": [ "attR3", @@ -193483,7 +205182,6 @@ "plasmid_name": "IDG_TMEM38B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161658", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -193542,7 +205240,10 @@ "plasmid_name": "pLenti-HRE-dUnaG", "sequence-type": "addgene-full", "addgene_id": "124372", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2023.06.017", + "https://www.ncbi.nlm.nih.gov/pubmed/37451265" + ], "kit": null, "att_sites": [ "attB1", @@ -193607,7 +205308,10 @@ "plasmid_name": "pRU206", "sequence-type": "addgene-full", "addgene_id": "167693", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -193657,7 +205361,9 @@ "plasmid_name": "pCK122 pDESTattB_exorh:mCherry", "sequence-type": "addgene-full", "addgene_id": "213511", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.12.08.570868" + ], "kit": null, "att_sites": [ "attR3", @@ -193706,7 +205412,10 @@ "plasmid_name": "pMx/ATP11C-HA", "sequence-type": "addgene-full", "addgene_id": "209237", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -193742,7 +205451,10 @@ "plasmid_name": "S1_AscI_V5-gateway_Bsu36I", "sequence-type": "addgene-full", "addgene_id": "128467", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "file": "data/addgene_plasmids/128467.addgene-full.gb" }, @@ -193751,7 +205463,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp8", "sequence-type": "depositor-full", "addgene_id": "168871", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -193780,7 +205495,10 @@ "plasmid_name": "pLIX403_Capture1_APOBEC_HA_P2A_mRuby", "sequence-type": "addgene-full", "addgene_id": "183901", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-021-01128-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33963355" + ], "kit": null, "att_sites": [ "attR1", @@ -193843,7 +205561,10 @@ "plasmid_name": "pHAGE-DDR2", "sequence-type": "addgene-full", "addgene_id": "116729", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -193898,7 +205619,6 @@ "plasmid_name": "pDONR221-CTSL", "sequence-type": "addgene-full", "addgene_id": "158444", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -193927,7 +205647,10 @@ "plasmid_name": "THOC1", "sequence-type": "addgene-full", "addgene_id": "156081", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -193970,7 +205693,10 @@ "plasmid_name": "pYPQ-Cas12j2", "sequence-type": "addgene-full", "addgene_id": "173924", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2022.100453", + "https://www.ncbi.nlm.nih.gov/pubmed/36127876" + ], "kit": null, "att_sites": [ "attL1", @@ -194002,7 +205728,10 @@ "plasmid_name": "pHAGE-PIK3CA-P366R", "sequence-type": "addgene-full", "addgene_id": "116520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -194056,7 +205785,10 @@ "plasmid_name": "pGWB455", "sequence-type": "depositor-full", "addgene_id": "74837", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -194108,7 +205840,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.T347N", "sequence-type": "addgene-full", "addgene_id": "81394", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -194140,7 +205875,10 @@ "plasmid_name": "pCFJ2241 - [1-2] ENTR - Fluor - ce-mCardinal (1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159860", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -194171,7 +205909,10 @@ "plasmid_name": "Flag-HA-JOSD2", "sequence-type": "addgene-full", "addgene_id": "22548", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -194216,7 +205957,10 @@ "plasmid_name": "pDONR221-SPNS3_STOP", "sequence-type": "addgene-full", "addgene_id": "161451", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -194247,7 +205991,10 @@ "plasmid_name": "p5Esnx5E1", "sequence-type": "addgene-full", "addgene_id": "90115", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -194278,7 +206025,6 @@ "plasmid_name": "R777-E022 Hs.CCND3-nostop", "sequence-type": "depositor-full", "addgene_id": "70306", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -194306,7 +206052,10 @@ "plasmid_name": "pDONR201-Eps8L2", "sequence-type": "addgene-full", "addgene_id": "196526", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attL1", @@ -194329,7 +206078,10 @@ "plasmid_name": "pLenti-PGK-flag-RAP1B-V12-puro", "sequence-type": "addgene-full", "addgene_id": "156168", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -194391,7 +206143,10 @@ "plasmid_name": "pDONR221_SLC30A7", "sequence-type": "addgene-full", "addgene_id": "132148", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132148.addgene-full.gb" }, @@ -194400,7 +206155,10 @@ "plasmid_name": "pPB-cT3G-cERP2-PPARG", "sequence-type": "addgene-full", "addgene_id": "192912", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192912.addgene-full.gb" }, @@ -194409,7 +206167,10 @@ "plasmid_name": "pDONR223-ZNF655", "sequence-type": "addgene-full", "addgene_id": "88578", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -194438,7 +206199,10 @@ "plasmid_name": "pPB-DEST-R5R4-pHygTK", "sequence-type": "addgene-full", "addgene_id": "141059", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR4", @@ -194486,7 +206250,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS1", "sequence-type": "addgene-full", "addgene_id": "145342", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -194529,7 +206296,10 @@ "plasmid_name": "C417-E12: attB4-polyhedrinp>Strep2x2-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162937", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -194564,7 +206334,10 @@ "plasmid_name": "pLX304 Luciferase-V5 blast", "sequence-type": "addgene-full", "addgene_id": "98580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "att_sites": [ "attB1", @@ -194625,7 +206398,10 @@ "plasmid_name": "pDONR223_MAPKAP1_WT", "sequence-type": "addgene-full", "addgene_id": "82146", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -194654,7 +206430,10 @@ "plasmid_name": "pDONR221_SLC7A8", "sequence-type": "addgene-full", "addgene_id": "132233", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132233.addgene-full.gb" }, @@ -194663,7 +206442,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-R4R3", "sequence-type": "addgene-full", "addgene_id": "113739", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -194697,7 +206479,10 @@ "plasmid_name": "pENTR4 Ta-SRO1 JN177", "sequence-type": "addgene-full", "addgene_id": "192546", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koac261", + "https://www.ncbi.nlm.nih.gov/pubmed/35980152" + ], "kit": null, "att_sites": [ "attL1", @@ -194721,7 +206506,10 @@ "plasmid_name": "pDONR221-HES3", "sequence-type": "addgene-full", "addgene_id": "101411", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -194750,7 +206538,10 @@ "plasmid_name": "pQMD", "sequence-type": "depositor-full", "addgene_id": "48103", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.02296-13", + "https://www.ncbi.nlm.nih.gov/pubmed/23995928" + ], "kit": null, "att_sites": [ "attR1", @@ -194787,7 +206578,10 @@ "plasmid_name": "pAG415GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14361", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -194847,7 +206641,10 @@ "plasmid_name": "pGWB545", "sequence-type": "depositor-full", "addgene_id": "74879", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -194898,7 +206695,10 @@ "plasmid_name": "pMuLE ENTR tdTomato L5-L2", "sequence-type": "depositor-full", "addgene_id": "62185", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -194933,7 +206733,10 @@ "plasmid_name": "pENTR/pTER shEGFP #1 (628-2)", "sequence-type": "depositor-full", "addgene_id": "17470", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -194959,7 +206762,10 @@ "plasmid_name": "PTPRA_deltaD1-GFP fusion", "sequence-type": "addgene-full", "addgene_id": "139640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -195006,7 +206812,10 @@ "plasmid_name": "pDONR221_SLC25A5", "sequence-type": "addgene-full", "addgene_id": "132007", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132007.addgene-full.gb" }, @@ -195015,7 +206824,10 @@ "plasmid_name": "pCPP5328", "sequence-type": "addgene-full", "addgene_id": "128721", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128721.addgene-full.gb" }, @@ -195024,7 +206836,6 @@ "plasmid_name": "R777-E064 Hs.ETS1-nostop", "sequence-type": "depositor-full", "addgene_id": "70348", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -195052,7 +206863,10 @@ "plasmid_name": "pDONR221-Pfa1", "sequence-type": "addgene-full", "addgene_id": "99999", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attL1", @@ -195083,7 +206897,10 @@ "plasmid_name": "pDONR221 NLRP1 M77T", "sequence-type": "addgene-full", "addgene_id": "166818", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -195116,7 +206933,10 @@ "plasmid_name": "tetO-SRF", "sequence-type": "addgene-full", "addgene_id": "170704", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170704.addgene-full.gb" }, @@ -195125,7 +206945,6 @@ "plasmid_name": "IDG_KCNAB3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161665", - "references": [], "kit": null, "file": "data/addgene_plasmids/161665.addgene-full.gb" }, @@ -195134,7 +206953,10 @@ "plasmid_name": "pFRT_TO_FlagHA_G3BP1", "sequence-type": "addgene-full", "addgene_id": "127106", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.12.024", + "https://www.ncbi.nlm.nih.gov/pubmed/31981475" + ], "kit": null, "att_sites": [ "attB1", @@ -195179,7 +207001,10 @@ "plasmid_name": "pME-QUAS5x:GFPNLS-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155115", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155115.addgene-full.gb" }, @@ -195188,7 +207013,10 @@ "plasmid_name": "pKB11 (pDEST-DHFR F[1,2] C-term, NatR)", "sequence-type": "addgene-full", "addgene_id": "210485", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210485.addgene-full.gb" }, @@ -195197,7 +207025,10 @@ "plasmid_name": "pJJiaDEST-APEX2-GAL3", "sequence-type": "addgene-full", "addgene_id": "149518", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.009", + "https://www.ncbi.nlm.nih.gov/pubmed/29625033" + ], "kit": null, "att_sites": [ "attB1", @@ -195252,7 +207083,10 @@ "plasmid_name": "pZA1", "sequence-type": "addgene-full", "addgene_id": "158479", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -195281,7 +207115,10 @@ "plasmid_name": "pHAGE-AXL", "sequence-type": "addgene-full", "addgene_id": "116714", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -195330,7 +207167,10 @@ "plasmid_name": "GLUT1-eGFP/pcDNA-DEST47", "sequence-type": "addgene-full", "addgene_id": "18729", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbamem.2007.11.015", + "https://www.ncbi.nlm.nih.gov/pubmed/18177733" + ], "kit": null, "att_sites": [ "attB1", @@ -195382,7 +207222,10 @@ "plasmid_name": "pDEST-hMeCP2-GFP-R270X", "sequence-type": "addgene-full", "addgene_id": "48079", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.038", + "https://www.ncbi.nlm.nih.gov/pubmed/23452848" + ], "kit": null, "att_sites": [ "attB1" @@ -195432,7 +207275,10 @@ "plasmid_name": "LIIc F 1-2", "sequence-type": "depositor-full", "addgene_id": "54366", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "att_sites": [ "attR1", @@ -195464,7 +207310,6 @@ "plasmid_name": "pAMW-WnkAAxV", "sequence-type": "addgene-full", "addgene_id": "203980", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -195493,7 +207338,10 @@ "plasmid_name": "pEF5B-FRT-GFP-\u03b1TAT1[D157N]", "sequence-type": "depositor-full", "addgene_id": "27100", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1013728107", + "https://www.ncbi.nlm.nih.gov/pubmed/21068373" + ], "kit": null, "file": "data/addgene_plasmids/27100.depositor-full.gb" }, @@ -195502,7 +207350,10 @@ "plasmid_name": "TUBG1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98376", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -195562,7 +207413,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM F370G", "sequence-type": "addgene-full", "addgene_id": "169986", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attB1", @@ -195614,7 +207468,10 @@ "plasmid_name": "pDONR223_WBSCR17_p.E507K", "sequence-type": "addgene-full", "addgene_id": "81619", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -195646,7 +207503,10 @@ "plasmid_name": "pDONR221-ZNF208", "sequence-type": "depositor-full", "addgene_id": "101549", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -195677,7 +207537,10 @@ "plasmid_name": "actc1b-mKate2-Bin1b", "sequence-type": "addgene-full", "addgene_id": "109509", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -195719,7 +207582,10 @@ "plasmid_name": "pENTR4-GST 6P-1 (w487-1)", "sequence-type": "depositor-full", "addgene_id": "17741", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -195746,7 +207612,9 @@ "plasmid_name": "pLV-EgI-BlastR", "sequence-type": "addgene-full", "addgene_id": "207176", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "att_sites": [ "attR1", @@ -195801,7 +207669,10 @@ "plasmid_name": "TFORF3403", "sequence-type": "addgene-full", "addgene_id": "144879", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -195861,7 +207732,10 @@ "plasmid_name": "pDONR221_SLC25A12", "sequence-type": "addgene-full", "addgene_id": "131938", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -195893,7 +207767,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF8b", "sequence-type": "depositor-full", "addgene_id": "168859", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -195922,7 +207799,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12R", "sequence-type": "addgene-full", "addgene_id": "82804", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -195952,7 +207832,10 @@ "plasmid_name": "pDONR223_RB1_p.V654L", "sequence-type": "addgene-full", "addgene_id": "81562", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -195964,7 +207847,10 @@ "plasmid_name": "pDONR221-SLC25A32_STOP", "sequence-type": "addgene-full", "addgene_id": "161147", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -195995,7 +207881,10 @@ "plasmid_name": "RCASBP-Y NHA", "sequence-type": "depositor-full", "addgene_id": "11479", - "references": [], + "references": [ + "https://doi.org/10.1093/dnares/8.5.221", + "https://www.ncbi.nlm.nih.gov/pubmed/11759842" + ], "kit": null, "att_sites": [ "attR1", @@ -196029,7 +207918,10 @@ "plasmid_name": "R619-M66-303: CMV51p> HCoV-OC43 S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166015", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -196085,7 +207977,10 @@ "plasmid_name": "RSRC1", "sequence-type": "addgene-full", "addgene_id": "155983", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -196128,7 +208023,10 @@ "plasmid_name": "p3E-rab18b", "sequence-type": "addgene-full", "addgene_id": "109672", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -196159,7 +208057,10 @@ "plasmid_name": "TFORF3280", "sequence-type": "addgene-full", "addgene_id": "144756", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -196219,7 +208120,10 @@ "plasmid_name": "p3E-ARF6-DN", "sequence-type": "addgene-full", "addgene_id": "109592", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -196250,7 +208154,10 @@ "plasmid_name": "pGWT35S-AtOEP7(1-50aa)-mVenus", "sequence-type": "addgene-full", "addgene_id": "194000", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "att_sites": [ "attB1", @@ -196296,7 +208203,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF8", "sequence-type": "addgene-full", "addgene_id": "168884", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -196325,7 +208235,10 @@ "plasmid_name": "5'-3xFLAG Tcf12+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212077", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -196365,7 +208278,10 @@ "plasmid_name": "pLIX403_deltaUBA_UBAP2L_mCherry", "sequence-type": "addgene-full", "addgene_id": "105287", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.12.032", + "https://www.ncbi.nlm.nih.gov/pubmed/29373831" + ], "kit": null, "att_sites": [ "attB1", @@ -196424,7 +208340,10 @@ "plasmid_name": "pDONR223_PTEN_p.R173H", "sequence-type": "addgene-full", "addgene_id": "81682", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -196456,7 +208375,6 @@ "plasmid_name": "pINDUCER20-FLAG-hMYOD1 (#800)", "sequence-type": "addgene-full", "addgene_id": "78330", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -196510,7 +208428,10 @@ "plasmid_name": "TFORF3460", "sequence-type": "addgene-full", "addgene_id": "144936", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -196570,7 +208491,10 @@ "plasmid_name": "pHAGE-BRAF-T599R", "sequence-type": "addgene-full", "addgene_id": "116202", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -196625,7 +208549,10 @@ "plasmid_name": "pDONR221_SLC6A15", "sequence-type": "addgene-full", "addgene_id": "131877", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -196656,7 +208583,10 @@ "plasmid_name": "TFORF3206", "sequence-type": "addgene-full", "addgene_id": "144682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -196716,7 +208646,10 @@ "plasmid_name": "pDONR221-SLC29A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161093", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -196747,7 +208680,10 @@ "plasmid_name": "p3E-mCherry-NS-MCS", "sequence-type": "depositor-full", "addgene_id": "75179", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -196784,7 +208720,9 @@ "plasmid_name": "pME-mCerulean3-TUBB1A (JDW 1367)", "sequence-type": "addgene-full", "addgene_id": "224503", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -196823,7 +208761,10 @@ "plasmid_name": "pDONR221-SLC6A17_STOP", "sequence-type": "addgene-full", "addgene_id": "161373", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -196854,7 +208795,10 @@ "plasmid_name": "pDONR223_JAK2_WT", "sequence-type": "addgene-full", "addgene_id": "81756", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -196886,7 +208830,10 @@ "plasmid_name": "TFORF3086", "sequence-type": "addgene-full", "addgene_id": "144562", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144562.addgene-full.gb" }, @@ -196895,7 +208842,10 @@ "plasmid_name": "pDONR221 Mak16", "sequence-type": "depositor-full", "addgene_id": "63762", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -196926,7 +208876,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp13", "sequence-type": "addgene-full", "addgene_id": "168950", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -196955,7 +208908,10 @@ "plasmid_name": "DCP1A", "sequence-type": "addgene-full", "addgene_id": "155498", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -196998,7 +208954,10 @@ "plasmid_name": "pHAGE-BRAF-L597S", "sequence-type": "addgene-full", "addgene_id": "116179", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -197053,7 +209012,9 @@ "plasmid_name": "pMpGWB419", "sequence-type": "depositor-full", "addgene_id": "68684", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -197102,7 +209063,10 @@ "plasmid_name": "pDONR223_FTH1_WT", "sequence-type": "addgene-full", "addgene_id": "81879", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -197134,7 +209098,6 @@ "plasmid_name": "pLV-EF1-FLP-PGK-Neo", "sequence-type": "addgene-full", "addgene_id": "108544", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -197199,7 +209162,10 @@ "plasmid_name": "A1-LCD-30G+30S-12F+12Y", "sequence-type": "addgene-full", "addgene_id": "178687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -197234,7 +209200,9 @@ "plasmid_name": "pPB-cT3G-cERP2-HDAC2", "sequence-type": "addgene-full", "addgene_id": "222553", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -197280,7 +209248,10 @@ "plasmid_name": "pNOC-RLUC", "sequence-type": "addgene-full", "addgene_id": "98142", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.14314", + "https://www.ncbi.nlm.nih.gov/pubmed/30883973" + ], "kit": null, "file": "data/addgene_plasmids/98142.addgene-full.gb" }, @@ -197289,7 +209260,6 @@ "plasmid_name": "pAd/WT1-IRES-nAmCyan", "sequence-type": "addgene-full", "addgene_id": "29756", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -197331,7 +209301,10 @@ "plasmid_name": "KZ801: pMAGIC (L1-R5) hU6::SaCas9 gRNA scaffold; EF1a promoter", "sequence-type": "addgene-full", "addgene_id": "121814", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -197367,7 +209340,10 @@ "plasmid_name": "pHAGE-EGFR-R776H", "sequence-type": "addgene-full", "addgene_id": "116299", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116299.addgene-full.gb" }, @@ -197376,7 +209352,10 @@ "plasmid_name": "LB101: pMAGIC (L3-L2) 3x HA epitope tag + polyA; hU6::SaCas9 TRE#2 gRNA", "sequence-type": "addgene-full", "addgene_id": "131758", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -197413,7 +209392,10 @@ "plasmid_name": "pYPQ230-D156R", "sequence-type": "addgene-full", "addgene_id": "188542", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02929-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37122009" + ], "kit": null, "att_sites": [ "attL1", @@ -197445,7 +209427,10 @@ "plasmid_name": "pDONR221-SLC29A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161305", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -197476,7 +209461,10 @@ "plasmid_name": "TFORF3143", "sequence-type": "addgene-full", "addgene_id": "144619", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -197536,7 +209524,10 @@ "plasmid_name": "pGMEH-0X750-luxAB-DAS+4", "sequence-type": "depositor-full", "addgene_id": "49519", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "att_sites": [ "attB1", @@ -197571,7 +209562,10 @@ "plasmid_name": "pDONR223_MAGEC2_p.D15N", "sequence-type": "addgene-full", "addgene_id": "81624", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -197603,7 +209597,10 @@ "plasmid_name": "pDONR221-SLC22A17_STOP", "sequence-type": "addgene-full", "addgene_id": "161201", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -197634,7 +209631,10 @@ "plasmid_name": "pDONR223_TUBB_WT", "sequence-type": "addgene-full", "addgene_id": "81990", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -197666,7 +209666,10 @@ "plasmid_name": "pCFJ1208", "sequence-type": "depositor-full", "addgene_id": "44490", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attB1", @@ -197703,7 +209706,10 @@ "plasmid_name": "pDONR221-kcnj3a", "sequence-type": "addgene-full", "addgene_id": "173129", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -197734,7 +209740,10 @@ "plasmid_name": "pHTNW", "sequence-type": "addgene-full", "addgene_id": "136403", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attR1", @@ -197782,7 +209791,6 @@ "plasmid_name": "35S:YFPc-RabG3b-WT", "sequence-type": "addgene-full", "addgene_id": "102373", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -197817,7 +209825,10 @@ "plasmid_name": "TFORF2934", "sequence-type": "addgene-full", "addgene_id": "144410", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -197877,7 +209888,6 @@ "plasmid_name": "R777-E323 Hs.SPRED2", "sequence-type": "depositor-full", "addgene_id": "70607", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -197905,7 +209915,10 @@ "plasmid_name": "pDONR221_MFSD3", "sequence-type": "addgene-full", "addgene_id": "131905", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131905.addgene-full.gb" }, @@ -197914,7 +209927,10 @@ "plasmid_name": "pHAGE-ESR1-S463P", "sequence-type": "addgene-full", "addgene_id": "116370", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -197966,7 +209982,9 @@ "plasmid_name": "pME-BrainbowTEC", "sequence-type": "depositor-full", "addgene_id": "82405", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL1", @@ -198009,7 +210027,10 @@ "plasmid_name": "TFORF3368", "sequence-type": "addgene-full", "addgene_id": "144844", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -198069,7 +210090,10 @@ "plasmid_name": "pDONR223_FBXW7_p.D211N", "sequence-type": "addgene-full", "addgene_id": "82839", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -198098,7 +210122,6 @@ "plasmid_name": "PSMA4_BirA_Cterm", "sequence-type": "addgene-full", "addgene_id": "221513", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -198142,7 +210165,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep27", "sequence-type": "addgene-full", "addgene_id": "136857", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -198187,7 +210213,10 @@ "plasmid_name": "pE4n", "sequence-type": "depositor-full", "addgene_id": "17458", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -198214,7 +210243,10 @@ "plasmid_name": "pYPQ239-RR", "sequence-type": "addgene-full", "addgene_id": "108862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "file": "data/addgene_plasmids/108862.addgene-full.gb" }, @@ -198223,7 +210255,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-ERBB2 NLS", "sequence-type": "addgene-full", "addgene_id": "192316", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -198259,7 +210294,10 @@ "plasmid_name": "pENTR-ZmIAA5", "sequence-type": "addgene-full", "addgene_id": "188430", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -198290,7 +210328,10 @@ "plasmid_name": "pGWB509", "sequence-type": "depositor-full", "addgene_id": "74851", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -198338,7 +210379,10 @@ "plasmid_name": "pAG303GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14349", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -198395,7 +210439,10 @@ "plasmid_name": "pSGE_709_S2-1-Pal_dCP", "sequence-type": "depositor-full", "addgene_id": "71162", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -198428,7 +210475,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP15", "sequence-type": "addgene-full", "addgene_id": "158366", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -198473,7 +210523,10 @@ "plasmid_name": "pENTR L3-mCherry-HA-L2", "sequence-type": "depositor-full", "addgene_id": "32313", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attL2", @@ -198508,7 +210561,10 @@ "plasmid_name": "pDONR221 Cas9-POLD3", "sequence-type": "addgene-full", "addgene_id": "183197", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "att_sites": [ "attL1", @@ -198542,7 +210598,6 @@ "plasmid_name": "pKPY737", "sequence-type": "depositor-full", "addgene_id": "72673", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -198576,7 +210631,6 @@ "plasmid_name": "R777-E076 Hs.EXOC5-nostop", "sequence-type": "depositor-full", "addgene_id": "70360", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -198604,7 +210658,10 @@ "plasmid_name": "gRNA NIA Null", "sequence-type": "addgene-full", "addgene_id": "198728", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-022-01585-8", + "https://www.ncbi.nlm.nih.gov/pubmed/36593415" + ], "kit": null, "att_sites": [ "attB1", @@ -198648,7 +210705,10 @@ "plasmid_name": "HA-hDAGLa-V5", "sequence-type": "addgene-full", "addgene_id": "87674", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mcn.2016.08.011", + "https://www.ncbi.nlm.nih.gov/pubmed/27595600" + ], "kit": null, "att_sites": [ "attB1", @@ -198699,7 +210759,10 @@ "plasmid_name": "pDONR223_BRP44_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82976", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -198728,7 +210791,6 @@ "plasmid_name": "pGEX6P1-DEST-His", "sequence-type": "addgene-full", "addgene_id": "119763", - "references": [], "kit": null, "file": "data/addgene_plasmids/119763.addgene-full.gb" }, @@ -198737,7 +210799,10 @@ "plasmid_name": "KG703: pMVP (L5-L4) 6x His epitope tag", "sequence-type": "addgene-full", "addgene_id": "121706", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -198770,7 +210835,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-59", "sequence-type": "depositor-full", "addgene_id": "46657", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -198820,7 +210888,9 @@ "plasmid_name": "pDONR221 msNLRP3(\u0394PYD, I125M-END) (STOP)", "sequence-type": "addgene-full", "addgene_id": "218640", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218640.addgene-full.gb" }, @@ -198829,7 +210899,10 @@ "plasmid_name": "pDD378", "sequence-type": "addgene-full", "addgene_id": "91827", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "att_sites": [ "attL1", @@ -198860,7 +210933,10 @@ "plasmid_name": "pENTR4-FKBP12DD N-term C (w385-10)", "sequence-type": "depositor-full", "addgene_id": "17416", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -198885,7 +210961,10 @@ "plasmid_name": "pHAGE-BRAF-F595L", "sequence-type": "addgene-full", "addgene_id": "116144", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -198940,7 +211019,10 @@ "plasmid_name": "pYPQ239-STU", "sequence-type": "addgene-full", "addgene_id": "138112", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -198971,7 +211053,10 @@ "plasmid_name": "pDONR221-kcnk13b", "sequence-type": "addgene-full", "addgene_id": "208997", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -199002,7 +211087,10 @@ "plasmid_name": "pAG306GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14307", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -199061,7 +211149,10 @@ "plasmid_name": "pCLX-MIFE-hM3Dq-PGK-mCherry", "sequence-type": "addgene-full", "addgene_id": "114294", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "att_sites": [ "attB1", @@ -199117,7 +211208,10 @@ "plasmid_name": "pCM5.54", "sequence-type": "depositor-full", "addgene_id": "21392", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -199148,7 +211242,10 @@ "plasmid_name": "pDONR223_GEN1_WT", "sequence-type": "addgene-full", "addgene_id": "81844", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -199180,7 +211277,10 @@ "plasmid_name": "pENTR4-V5 (w71-3)", "sequence-type": "addgene-full", "addgene_id": "17425", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -199205,7 +211305,10 @@ "plasmid_name": "pENTR223-BPLF1_3009-3149", "sequence-type": "addgene-full", "addgene_id": "198587", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -199234,7 +211337,10 @@ "plasmid_name": "KN801: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS-VPR", "sequence-type": "addgene-full", "addgene_id": "121829", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -199272,7 +211378,10 @@ "plasmid_name": "pDONR223_GATA3_p.R330K", "sequence-type": "addgene-full", "addgene_id": "81410", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -199304,7 +211413,10 @@ "plasmid_name": "pCMU-NUCr", "sequence-type": "depositor-full", "addgene_id": "61168", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -199350,7 +211462,10 @@ "plasmid_name": "pEPYCeGM0002", "sequence-type": "addgene-full", "addgene_id": "196142", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attL1", @@ -199374,7 +211489,10 @@ "plasmid_name": "TFORF3148", "sequence-type": "addgene-full", "addgene_id": "144624", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -199434,7 +211552,10 @@ "plasmid_name": "pLenti6.3/TO/V5-DEST-mTurquoise2", "sequence-type": "addgene-full", "addgene_id": "191010", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg1840", + "https://www.ncbi.nlm.nih.gov/pubmed/37436978" + ], "kit": null, "att_sites": [ "attB1", @@ -199498,7 +211619,10 @@ "plasmid_name": "p3E-DrCavin1b", "sequence-type": "addgene-full", "addgene_id": "194292", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "att_sites": [ "attB2", @@ -199529,7 +211653,10 @@ "plasmid_name": "B3GALT5_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177006", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -199585,7 +211712,9 @@ "plasmid_name": "pDONR221-DDX5(PrD)", "sequence-type": "addgene-full", "addgene_id": "166167", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -199616,7 +211745,6 @@ "plasmid_name": "pENTR-R2L3-cGR-ID", "sequence-type": "addgene-full", "addgene_id": "139541", - "references": [], "kit": null, "file": "data/addgene_plasmids/139541.addgene-full.gb" }, @@ -199625,7 +211753,10 @@ "plasmid_name": "pDONR221_XPR1", "sequence-type": "addgene-full", "addgene_id": "132306", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -199656,7 +211787,10 @@ "plasmid_name": "pMYH9-WT-V5", "sequence-type": "addgene-full", "addgene_id": "183512", - "references": [], + "references": [ + "https://doi.org/10.1186/1755-8417-1-5", + "https://www.ncbi.nlm.nih.gov/pubmed/19046415" + ], "kit": null, "att_sites": [ "attB1", @@ -199707,7 +211841,6 @@ "plasmid_name": "pSC38", "sequence-type": "addgene-full", "addgene_id": "104812", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -199750,7 +211883,10 @@ "plasmid_name": "pACT2-Utp15", "sequence-type": "addgene-full", "addgene_id": "99978", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attB1", @@ -199786,7 +211922,10 @@ "plasmid_name": "pcDNA5-FRT/TO-N-mEGFP-PARP11", "sequence-type": "addgene-full", "addgene_id": "177998", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "att_sites": [ "attB1", @@ -199833,7 +211972,10 @@ "plasmid_name": "pDEST40-2XFL-Src-K298M", "sequence-type": "addgene-full", "addgene_id": "140315", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -199885,7 +212027,6 @@ "plasmid_name": "p667-UBC-BRSK2-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135254", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -199951,7 +212092,9 @@ "plasmid_name": "pDestTol2-QUAS:NLS-mApple-he1.1:CFP", "sequence-type": "addgene-full", "addgene_id": "184814", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "att_sites": [ "attB1", @@ -199999,7 +212142,10 @@ "plasmid_name": "pAF018 p3E-2A-mCerulean-CAAX", "sequence-type": "addgene-full", "addgene_id": "195975", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.24668", + "https://www.ncbi.nlm.nih.gov/pubmed/30194800" + ], "kit": null, "att_sites": [ "attL3", @@ -200037,7 +212183,10 @@ "plasmid_name": "pwB2b", "sequence-type": "depositor-full", "addgene_id": "32094", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1002161", + "https://www.ncbi.nlm.nih.gov/pubmed/21829355" + ], "kit": null, "att_sites": [ "attB1", @@ -200071,7 +212220,10 @@ "plasmid_name": "pYPQ145-ZmUbi-tRNA", "sequence-type": "addgene-full", "addgene_id": "158403", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00953-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34168320" + ], "kit": null, "att_sites": [ "attL2", @@ -200104,7 +212256,10 @@ "plasmid_name": "MSCV-neo C-HAonly HPV16 E7 E80A/D81A", "sequence-type": "addgene-full", "addgene_id": "191541", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "att_sites": [ "attB1", @@ -200149,7 +212304,10 @@ "plasmid_name": "pHAGE-TRIM33__RET", "sequence-type": "addgene-full", "addgene_id": "116841", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -200200,7 +212358,6 @@ "plasmid_name": "R777-E296 Hs.RPS6KA6-nostop", "sequence-type": "depositor-full", "addgene_id": "70580", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -200228,7 +212385,10 @@ "plasmid_name": "PB-TAC-KRAB-dCas9", "sequence-type": "addgene-full", "addgene_id": "120355", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2018.12.008", + "https://www.ncbi.nlm.nih.gov/pubmed/30639212" + ], "kit": null, "att_sites": [ "attR1", @@ -200294,7 +212454,10 @@ "plasmid_name": "pAG305GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14233", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -200350,7 +212513,10 @@ "plasmid_name": "pLX304 SLC2A1", "sequence-type": "addgene-full", "addgene_id": "193691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -200409,7 +212575,10 @@ "plasmid_name": "pLenti CMV/TO Zeo DEST (644-1)", "sequence-type": "addgene-full", "addgene_id": "17294", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -200463,7 +212632,10 @@ "plasmid_name": "pDL187", "sequence-type": "addgene-full", "addgene_id": "175933", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -200487,7 +212659,9 @@ "plasmid_name": "pMpGWB326", "sequence-type": "depositor-full", "addgene_id": "68654", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -200534,7 +212708,10 @@ "plasmid_name": "C122-E54: mRuby3", "sequence-type": "addgene-full", "addgene_id": "162899", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -200562,7 +212739,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST EIF2C4", "sequence-type": "depositor-full", "addgene_id": "19890", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -200608,7 +212788,10 @@ "plasmid_name": "pLenti-Zyxin-Full Length (aa1-564)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187692", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "att_sites": [ "attB1", @@ -200671,7 +212854,6 @@ "plasmid_name": "IDG_CACNB2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161684", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -200730,7 +212912,10 @@ "plasmid_name": "mTALEAD ATP6-2-2", "sequence-type": "addgene-full", "addgene_id": "210830", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "att_sites": [ "attB1", @@ -200769,7 +212954,10 @@ "plasmid_name": "pHAGE-IGF1R-G639R", "sequence-type": "addgene-full", "addgene_id": "116415", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -200819,7 +213007,10 @@ "plasmid_name": "2xmyc-RAB35", "sequence-type": "addgene-full", "addgene_id": "164632", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164632.addgene-full.gb" }, @@ -200828,7 +213019,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-MAP1LC3B", "sequence-type": "addgene-full", "addgene_id": "175753", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -200880,7 +213074,10 @@ "plasmid_name": "pLenti6.3delta4 GPR3-V5", "sequence-type": "addgene-full", "addgene_id": "172601", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02433-2", + "https://www.ncbi.nlm.nih.gov/pubmed/34302056" + ], "kit": null, "att_sites": [ "attB1", @@ -200939,7 +213136,10 @@ "plasmid_name": "pHAGE-PTEN-G127R", "sequence-type": "addgene-full", "addgene_id": "116621", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -200989,7 +213189,10 @@ "plasmid_name": "pENTR2-L3-SfoI-iRFP713-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141023", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL3", @@ -201028,7 +213231,10 @@ "plasmid_name": "pDONR221_SLCO5A1", "sequence-type": "addgene-full", "addgene_id": "132249", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -201059,7 +213265,10 @@ "plasmid_name": "pMK-Cas9-gate", "sequence-type": "addgene-full", "addgene_id": "113743", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -201111,7 +213320,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp2", "sequence-type": "depositor-full", "addgene_id": "168889", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -201140,7 +213352,10 @@ "plasmid_name": "pENTR-R4R3-3xmRuby-N", "sequence-type": "depositor-full", "addgene_id": "113754", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -201175,7 +213390,10 @@ "plasmid_name": "pDONR221-SLC22A24_STOP", "sequence-type": "depositor-full", "addgene_id": "161166", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -201206,7 +213424,10 @@ "plasmid_name": "pCFJ2259 - Intron GG2 - 900 bp", "sequence-type": "addgene-full", "addgene_id": "159881", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -201237,7 +213458,10 @@ "plasmid_name": "BirA-Myc_N_ETS1", "sequence-type": "addgene-full", "addgene_id": "167700", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -201281,7 +213505,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO L1-R5", "sequence-type": "depositor-full", "addgene_id": "62099", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -201316,7 +213543,6 @@ "plasmid_name": "pAG416-GAL-FUS-G156E", "sequence-type": "addgene-full", "addgene_id": "181716", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -201370,7 +213596,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS-Ala271 hygro", "sequence-type": "addgene-full", "addgene_id": "158637", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attB1", @@ -201436,7 +213665,10 @@ "plasmid_name": "pLenti6-DEST PINK1-V5 WT", "sequence-type": "addgene-full", "addgene_id": "13320", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0500617102", + "https://www.ncbi.nlm.nih.gov/pubmed/15824318" + ], "kit": null, "att_sites": [ "attB1", @@ -201494,7 +213726,6 @@ "plasmid_name": "MECP2 - E282G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216600", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -201524,7 +213755,10 @@ "plasmid_name": "pDONR221-SLC9B2_STOP", "sequence-type": "depositor-full", "addgene_id": "161401", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -201555,7 +213789,10 @@ "plasmid_name": "pKR2.40", "sequence-type": "depositor-full", "addgene_id": "26952", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2008.07.008", + "https://www.ncbi.nlm.nih.gov/pubmed/18692039" + ], "kit": null, "att_sites": [ "attR1", @@ -201599,7 +213836,10 @@ "plasmid_name": "pGL2209", "sequence-type": "addgene-full", "addgene_id": "137050", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-9210-2_10", + "https://www.ncbi.nlm.nih.gov/pubmed/30980305" + ], "kit": null, "att_sites": [ "attL1", @@ -201634,7 +213874,10 @@ "plasmid_name": "E3_pENTR_L3-L2_NG_G1333-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171733", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attL2", @@ -201670,7 +213913,10 @@ "plasmid_name": "pT3-EF1a-Bmi1", "sequence-type": "addgene-full", "addgene_id": "31783", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-09-0333", + "https://www.ncbi.nlm.nih.gov/pubmed/19934271" + ], "kit": null, "att_sites": [ "attB1", @@ -201716,7 +213962,10 @@ "plasmid_name": "pDONR221_SLC35G3", "sequence-type": "addgene-full", "addgene_id": "132132", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132132.addgene-full.gb" }, @@ -201725,7 +213974,6 @@ "plasmid_name": "pcDNA3.1-ccdB-3xFLAG", "sequence-type": "addgene-full", "addgene_id": "214984", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -201778,7 +214026,10 @@ "plasmid_name": "pDONR223_CLOCK_WT", "sequence-type": "addgene-full", "addgene_id": "82247", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -201807,7 +214058,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0403-luc2", "sequence-type": "addgene-full", "addgene_id": "214630", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -201851,7 +214105,10 @@ "plasmid_name": "pDONR223-TYRO3", "sequence-type": "addgene-full", "addgene_id": "23916", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -201883,7 +214140,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-BRSK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135269", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -201949,7 +214205,6 @@ "plasmid_name": "IDG_CACNG3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161622", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -202008,7 +214263,10 @@ "plasmid_name": "pYPQ150-x3.7", "sequence-type": "addgene-full", "addgene_id": "124308", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "att_sites": [ "attL1", @@ -202041,7 +214299,10 @@ "plasmid_name": "pLenti-PGK-Venus-Fluc (puro)", "sequence-type": "addgene-full", "addgene_id": "140328", - "references": [], + "references": [ + "https://doi.org/10.1093/noajnl/vdaa134", + "https://www.ncbi.nlm.nih.gov/pubmed/33241215" + ], "kit": null, "att_sites": [ "attB1", @@ -202107,7 +214368,10 @@ "plasmid_name": "pDONR P4-P1R-EGFP", "sequence-type": "depositor-full", "addgene_id": "48348", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -202146,7 +214410,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir28-wt", "sequence-type": "depositor-full", "addgene_id": "46687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46687.depositor-full.gb" }, @@ -202155,7 +214422,10 @@ "plasmid_name": "pCK033 p5E desma MCS", "sequence-type": "addgene-full", "addgene_id": "195948", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL4", @@ -202187,7 +214457,10 @@ "plasmid_name": "pEntry_HCoV-NL63-Protein3", "sequence-type": "depositor-full", "addgene_id": "168923", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -202216,7 +214489,10 @@ "plasmid_name": "pDONR221_SLC25A3", "sequence-type": "addgene-full", "addgene_id": "132040", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -202247,7 +214523,10 @@ "plasmid_name": "pENTR-L5-EYFP-L2", "sequence-type": "depositor-full", "addgene_id": "32417", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL4", @@ -202282,7 +214561,6 @@ "plasmid_name": "pDONR221-btg3", "sequence-type": "addgene-full", "addgene_id": "192735", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -202314,7 +214592,10 @@ "plasmid_name": "pMuLE ENTR SV40-hCas9 L3-L2", "sequence-type": "depositor-full", "addgene_id": "62133", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -202351,7 +214632,6 @@ "plasmid_name": "R777-E180 Hs.PIK3R5-nostop", "sequence-type": "depositor-full", "addgene_id": "70464", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -202379,7 +214659,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-PRDX1", "sequence-type": "addgene-full", "addgene_id": "38086", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -202425,7 +214708,6 @@ "plasmid_name": "pAG426GAL-MERS-CoV_PLP", "sequence-type": "addgene-full", "addgene_id": "203508", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -202479,7 +214761,10 @@ "plasmid_name": "pDONR221_SLC25A27", "sequence-type": "depositor-full", "addgene_id": "132004", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -202510,7 +214795,10 @@ "plasmid_name": "pSF464", "sequence-type": "addgene-full", "addgene_id": "167672", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attL1", @@ -202546,7 +214834,10 @@ "plasmid_name": "pHAGE-MAP2K1-P124S", "sequence-type": "addgene-full", "addgene_id": "116428", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -202601,7 +214892,10 @@ "plasmid_name": "C413-E11: attB4-Grp78p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162970", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -202636,7 +214930,10 @@ "plasmid_name": "p6VP1", "sequence-type": "depositor-full", "addgene_id": "24725", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2010.05.006", + "https://www.ncbi.nlm.nih.gov/pubmed/20542254" + ], "kit": null, "att_sites": [ "attB1", @@ -202674,7 +214971,10 @@ "plasmid_name": "pUN378 - pTRV2-CrGLK", "sequence-type": "addgene-full", "addgene_id": "203888", - "references": [], + "references": [ + "https://doi.org/10.1007/s00299-024-03208-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38743349" + ], "kit": null, "file": "data/addgene_plasmids/203888.addgene-full.gb" }, @@ -202683,7 +214983,10 @@ "plasmid_name": "pENTR223-BMRF1(EA-D)", "sequence-type": "addgene-full", "addgene_id": "195807", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -202712,7 +215015,10 @@ "plasmid_name": "pAG303GPD-ccdB", "sequence-type": "addgene-full", "addgene_id": "14134", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -202768,7 +215074,10 @@ "plasmid_name": "Flag-HA-OTUD4", "sequence-type": "addgene-full", "addgene_id": "22594", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -202819,7 +215128,10 @@ "plasmid_name": "pDRf1-SweetTrac1", "sequence-type": "addgene-full", "addgene_id": "169083", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2119183119", + "https://www.ncbi.nlm.nih.gov/pubmed/35046045" + ], "kit": null, "att_sites": [ "attB1", @@ -202861,7 +215173,10 @@ "plasmid_name": "pcDNA3.1-ccdB-3xFLAG-V5", "sequence-type": "addgene-full", "addgene_id": "87063", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.047", + "https://www.ncbi.nlm.nih.gov/pubmed/22939624" + ], "kit": null, "att_sites": [ "attR1", @@ -202915,7 +215230,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-MOB1A", "sequence-type": "addgene-full", "addgene_id": "172988", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -202960,7 +215278,10 @@ "plasmid_name": "pAG306GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14164", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -203018,7 +215339,10 @@ "plasmid_name": "pDONR221_SLC5A6", "sequence-type": "addgene-full", "addgene_id": "132194", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -203049,7 +215373,10 @@ "plasmid_name": "1456_pDEST_miniTol2_R4-R2_Cryst-eGFP", "sequence-type": "addgene-full", "addgene_id": "171795", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "att_sites": [ "attR2", @@ -203098,7 +215425,10 @@ "plasmid_name": "pGKO2-Gateway", "sequence-type": "depositor-full", "addgene_id": "63618", - "references": [], + "references": [ + "https://doi.org/10.1016/j.fgb.2005.03.004", + "https://www.ncbi.nlm.nih.gov/pubmed/15893252" + ], "kit": null, "att_sites": [ "attP1", @@ -203146,7 +215476,10 @@ "plasmid_name": "pDONR221_UCP1", "sequence-type": "addgene-full", "addgene_id": "132274", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -203177,7 +215510,10 @@ "plasmid_name": "MIS18A_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176973", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -203229,7 +215565,6 @@ "plasmid_name": "g15s pD42", "sequence-type": "addgene-full", "addgene_id": "117465", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -203268,7 +215603,10 @@ "plasmid_name": "pCR8/GW/TOPO-ELF1", "sequence-type": "addgene-full", "addgene_id": "98627", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -203297,7 +215635,10 @@ "plasmid_name": "pLentiPGK Hygro DEST ERKKTRmCerulean3", "sequence-type": "addgene-full", "addgene_id": "90229", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "att_sites": [ "attB1", @@ -203359,7 +215700,10 @@ "plasmid_name": "pDONR223_OR2G6_p.N294Y", "sequence-type": "addgene-full", "addgene_id": "81348", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -203391,7 +215735,10 @@ "plasmid_name": "pDONR223_BMP2_WT", "sequence-type": "addgene-full", "addgene_id": "82101", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -203421,7 +215768,10 @@ "plasmid_name": "pAG414GPD-FvCYP722C2(pYL878)", "sequence-type": "addgene-full", "addgene_id": "178299", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -203473,7 +215823,10 @@ "plasmid_name": "tetO-NFYB", "sequence-type": "addgene-full", "addgene_id": "170697", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -203535,7 +215888,10 @@ "plasmid_name": "pGWB551", "sequence-type": "depositor-full", "addgene_id": "74881", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -203584,7 +215940,10 @@ "plasmid_name": "pAG304GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14399", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -203643,7 +216002,10 @@ "plasmid_name": "pHAGE-PIK3CD-E873K", "sequence-type": "addgene-full", "addgene_id": "116567", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -203697,7 +216059,10 @@ "plasmid_name": "pDONR223_ZNF597_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83003", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -203726,7 +216091,10 @@ "plasmid_name": "pHAGE-STK11-G56W", "sequence-type": "addgene-full", "addgene_id": "116687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -203780,7 +216148,10 @@ "plasmid_name": "pLenti CMV-IFP2.0 T2A HO1", "sequence-type": "depositor-full", "addgene_id": "59427", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms4626", + "https://www.ncbi.nlm.nih.gov/pubmed/24832154" + ], "kit": null, "file": "data/addgene_plasmids/59427.depositor-full.gb" }, @@ -203789,7 +216160,10 @@ "plasmid_name": "p35S::Cf-4-YFPn", "sequence-type": "addgene-full", "addgene_id": "86161", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "att_sites": [ "attB1", @@ -203823,7 +216197,10 @@ "plasmid_name": "pT2-cryR;snx5CE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90152", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -203871,7 +216248,10 @@ "plasmid_name": "pAG306GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14403", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -203930,7 +216310,10 @@ "plasmid_name": "pDONR221-SVOPL_STOP", "sequence-type": "addgene-full", "addgene_id": "161416", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -203962,7 +216345,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CAMKK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170577", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -204028,7 +216410,10 @@ "plasmid_name": "pT2-cryR;mafbbCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90155", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -204076,7 +216461,10 @@ "plasmid_name": "pDONR221-SLC7A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161411", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161411.addgene-full.gb" }, @@ -204085,7 +216473,10 @@ "plasmid_name": "pLX304-ERBB2", "sequence-type": "addgene-full", "addgene_id": "175846", - "references": [], + "references": [ + "https://doi.org/10.1038/leu.2016.173", + "https://www.ncbi.nlm.nih.gov/pubmed/27416908" + ], "kit": null, "att_sites": [ "attB1", @@ -204144,7 +216535,10 @@ "plasmid_name": "pDONR223 LC3A WT", "sequence-type": "addgene-full", "addgene_id": "123069", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -204175,7 +216569,10 @@ "plasmid_name": "pHAGE-SIRPB1-R240C", "sequence-type": "addgene-full", "addgene_id": "116680", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -204230,7 +216627,10 @@ "plasmid_name": "pDONR221_SLC35G5", "sequence-type": "addgene-full", "addgene_id": "132108", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -204261,7 +216661,10 @@ "plasmid_name": "p35S::AtSOBIR1-mCherry", "sequence-type": "addgene-full", "addgene_id": "86166", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "att_sites": [ "attB1", @@ -204295,7 +216698,10 @@ "plasmid_name": "p221a-GUS", "sequence-type": "depositor-full", "addgene_id": "71263", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL1", @@ -204332,7 +216738,10 @@ "plasmid_name": "pHAGE-PIK3CB-R604Gfs*4", "sequence-type": "addgene-full", "addgene_id": "116560", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -204387,7 +216796,10 @@ "plasmid_name": "Crimson/P2A-ICP8 (pSLIK1)", "sequence-type": "addgene-full", "addgene_id": "113856", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0200955", + "https://www.ncbi.nlm.nih.gov/pubmed/30110337" + ], "kit": null, "att_sites": [ "attB1", @@ -204454,7 +216866,10 @@ "plasmid_name": "pDONR223-ZNF467", "sequence-type": "addgene-full", "addgene_id": "88643", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -204483,7 +216898,10 @@ "plasmid_name": "pDONR223_ZBTB24_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83004", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -204512,7 +216930,10 @@ "plasmid_name": "tetO-HAND2", "sequence-type": "addgene-full", "addgene_id": "170690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -204574,7 +216995,10 @@ "plasmid_name": "pSEM230 - pEXP[Pmlc-1 | ceGFP(2xNLS) | cbr-tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159794", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000302", + "https://www.ncbi.nlm.nih.gov/pubmed/32908967" + ], "kit": null, "att_sites": [ "attB1", @@ -204609,7 +217033,10 @@ "plasmid_name": "Rae1-pDONR221", "sequence-type": "addgene-full", "addgene_id": "124240", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbamcr.2017.05.020", + "https://www.ncbi.nlm.nih.gov/pubmed/28554770" + ], "kit": null, "att_sites": [ "attL1", @@ -204641,7 +217068,10 @@ "plasmid_name": "RUNX1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176974", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -204693,7 +217123,10 @@ "plasmid_name": "pCR8/GW/TOPO-TBX20a", "sequence-type": "addgene-full", "addgene_id": "98620", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -204722,7 +217155,10 @@ "plasmid_name": "pDONR223_CSNK1A1_WT", "sequence-type": "addgene-full", "addgene_id": "82106", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -204751,7 +217187,10 @@ "plasmid_name": "pME-6MTnlstdTomato2A", "sequence-type": "depositor-full", "addgene_id": "67685", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137919", + "https://www.ncbi.nlm.nih.gov/pubmed/27578780" + ], "kit": null, "att_sites": [ "attL1", @@ -204787,7 +217226,10 @@ "plasmid_name": "p3E_afp_UTR", "sequence-type": "addgene-full", "addgene_id": "199341", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "att_sites": [ "attL3", @@ -204818,7 +217260,10 @@ "plasmid_name": "469_pME_iCre", "sequence-type": "addgene-full", "addgene_id": "171792", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "att_sites": [ "attL1", @@ -204851,7 +217296,10 @@ "plasmid_name": "pLX301", "sequence-type": "addgene-full", "addgene_id": "25895", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "att_sites": [ "attR1", @@ -204916,7 +217364,6 @@ "plasmid_name": "R777-E222 Hs.RALGDS-nostop", "sequence-type": "depositor-full", "addgene_id": "70506", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -204944,7 +217391,10 @@ "plasmid_name": "pDONR221_SPNS1", "sequence-type": "addgene-full", "addgene_id": "132273", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -204975,7 +217425,10 @@ "plasmid_name": "pBAV150", "sequence-type": "addgene-full", "addgene_id": "79764", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-2958.2006.05350.x", + "https://www.ncbi.nlm.nih.gov/pubmed/16942603" + ], "kit": null, "att_sites": [ "attR1", @@ -205021,7 +217474,10 @@ "plasmid_name": "pDONR221_SLC5A1", "sequence-type": "addgene-full", "addgene_id": "132193", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -205052,7 +217508,10 @@ "plasmid_name": "pENTR2-L3-SfoI-Venus-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141019", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL3", @@ -205095,7 +217554,10 @@ "plasmid_name": "GFP-ASH1L", "sequence-type": "addgene-full", "addgene_id": "65369", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -205147,7 +217609,10 @@ "plasmid_name": "C453-E18: attB4-polyhedrinp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162977", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -205175,7 +217640,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 V192S", "sequence-type": "addgene-full", "addgene_id": "175769", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -205228,7 +217696,10 @@ "plasmid_name": "pENTR223-BGLF2", "sequence-type": "addgene-full", "addgene_id": "195800", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -205257,7 +217728,10 @@ "plasmid_name": "pcDNA3.1-3xFLAG-V5-ccdB", "sequence-type": "addgene-full", "addgene_id": "87064", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.047", + "https://www.ncbi.nlm.nih.gov/pubmed/22939624" + ], "kit": null, "att_sites": [ "attR1", @@ -205310,7 +217784,10 @@ "plasmid_name": "Flag-HA-DUB3", "sequence-type": "addgene-full", "addgene_id": "22593", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -205358,7 +217835,10 @@ "plasmid_name": "UAS::PTPRDb-DN-GFP", "sequence-type": "depositor-full", "addgene_id": "37112", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.01.040", + "https://www.ncbi.nlm.nih.gov/pubmed/22326027" + ], "kit": null, "att_sites": [ "attB1", @@ -205401,7 +217881,10 @@ "plasmid_name": "pSF280", "sequence-type": "addgene-full", "addgene_id": "167675", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attL1", @@ -205437,7 +217920,10 @@ "plasmid_name": "pDONR-IAA14_no stop", "sequence-type": "depositor-full", "addgene_id": "83852", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -205468,7 +217954,10 @@ "plasmid_name": "pLenti-V5-KDM3A-mut", "sequence-type": "addgene-full", "addgene_id": "82332", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gku1298", + "https://www.ncbi.nlm.nih.gov/pubmed/25488809" + ], "kit": null, "att_sites": [ "attB1", @@ -205525,7 +218014,10 @@ "plasmid_name": "pDL73", "sequence-type": "addgene-full", "addgene_id": "175909", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -205549,7 +218041,10 @@ "plasmid_name": "pDONR221_SLC22A18", "sequence-type": "addgene-full", "addgene_id": "132047", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -205580,7 +218075,6 @@ "plasmid_name": "pDONR221-nrip1b", "sequence-type": "addgene-full", "addgene_id": "192732", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -205611,7 +218105,6 @@ "plasmid_name": "pDONR221-DPP4", "sequence-type": "addgene-full", "addgene_id": "158439", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -205643,7 +218136,10 @@ "plasmid_name": "pHAGE-KDR", "sequence-type": "addgene-full", "addgene_id": "116754", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -205693,7 +218189,6 @@ "plasmid_name": "R777-E264 Hs.RASSF6-nostop", "sequence-type": "depositor-full", "addgene_id": "70548", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -205721,7 +218216,6 @@ "plasmid_name": "IDG_SCN3B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161625", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -205780,7 +218274,10 @@ "plasmid_name": "pYPQ153", "sequence-type": "depositor-full", "addgene_id": "69304", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69304.depositor-full.gb" }, @@ -205789,7 +218286,6 @@ "plasmid_name": "Hs.HRAS G13D", "sequence-type": "depositor-full", "addgene_id": "83185", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -205814,7 +218310,10 @@ "plasmid_name": "pT2-cryR;yrkP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90168", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -205864,7 +218363,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0484-luc2", "sequence-type": "addgene-full", "addgene_id": "214637", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -205909,7 +218411,10 @@ "plasmid_name": "pDONR223_WNT5A_WT", "sequence-type": "addgene-full", "addgene_id": "82240", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -205938,7 +218443,10 @@ "plasmid_name": "pT3-EF1a-c-Met", "sequence-type": "addgene-full", "addgene_id": "31784", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0706578104", + "https://www.ncbi.nlm.nih.gov/pubmed/17785413" + ], "kit": null, "att_sites": [ "attB1", @@ -205983,7 +218491,10 @@ "plasmid_name": "pDONR221_SLC35A3", "sequence-type": "addgene-full", "addgene_id": "132135", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132135.addgene-full.gb" }, @@ -205992,7 +218503,10 @@ "plasmid_name": "pLX307-VHL-3F-BirA", "sequence-type": "addgene-full", "addgene_id": "220147", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-024-01590-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38514884" + ], "kit": null, "att_sites": [ "attB1", @@ -206054,7 +218568,6 @@ "plasmid_name": "pREP41xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79017", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -206101,7 +218614,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS-Ala148", "sequence-type": "addgene-full", "addgene_id": "158630", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attL1", @@ -206130,7 +218646,10 @@ "plasmid_name": "pLX304-Flag-APEX2-NES", "sequence-type": "addgene-full", "addgene_id": "92158", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.24463", + "https://www.ncbi.nlm.nih.gov/pubmed/28441135" + ], "kit": null, "att_sites": [ "attB1", @@ -206192,7 +218711,6 @@ "plasmid_name": "BRAF - R146W in pENTR", "sequence-type": "addgene-full", "addgene_id": "216607", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -206222,7 +218740,10 @@ "plasmid_name": "pCM5.64", "sequence-type": "depositor-full", "addgene_id": "19372", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -206253,7 +218774,10 @@ "plasmid_name": "E3_pENTR_L3-L2_NG_G1397-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171734", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attL2", @@ -206289,7 +218813,10 @@ "plasmid_name": "pDest-623 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161878", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -206329,7 +218856,10 @@ "plasmid_name": "pMXs-ms-Sox7", "sequence-type": "depositor-full", "addgene_id": "50780", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "file": "data/addgene_plasmids/50780.depositor-full.gb" }, @@ -206338,7 +218868,6 @@ "plasmid_name": "pAG416-GAL-FUS", "sequence-type": "addgene-full", "addgene_id": "181711", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -206392,7 +218921,10 @@ "plasmid_name": "pDONR223_C15orf23_p.P26L", "sequence-type": "addgene-full", "addgene_id": "81372", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -206425,7 +218957,10 @@ "plasmid_name": "pGWB507", "sequence-type": "depositor-full", "addgene_id": "74849", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -206471,7 +219006,10 @@ "plasmid_name": "SUMO3_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176949", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -206524,7 +219062,10 @@ "plasmid_name": "pAG304GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14351", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -206581,7 +219122,10 @@ "plasmid_name": "pCFJ1117 - [4-1] - Promoter - Psmu-1(no_atg)", "sequence-type": "addgene-full", "addgene_id": "159886", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL4", @@ -206612,7 +219156,10 @@ "plasmid_name": "pJRA105", "sequence-type": "addgene-full", "addgene_id": "209338", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -206653,7 +219200,10 @@ "plasmid_name": "pZeo-Cas9-gate", "sequence-type": "addgene-full", "addgene_id": "113744", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -206715,7 +219265,10 @@ "plasmid_name": "pHAGE-PTEN-L325R", "sequence-type": "addgene-full", "addgene_id": "116626", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -206769,7 +219322,6 @@ "plasmid_name": "R777-E094 Hs.FNTA-nostop", "sequence-type": "depositor-full", "addgene_id": "70378", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -206798,7 +219350,10 @@ "plasmid_name": "pENTR2-L3-SfoI-IRES-EGFP-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141024", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL3", @@ -206844,7 +219399,10 @@ "plasmid_name": "pEnt R3L2-MCS", "sequence-type": "depositor-full", "addgene_id": "26799", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "att_sites": [ "attL2", @@ -206868,7 +219426,10 @@ "plasmid_name": "pENTR223-BXRF1", "sequence-type": "addgene-full", "addgene_id": "195789", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -206897,7 +219458,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-MAP1LC3BK51A", "sequence-type": "addgene-full", "addgene_id": "175754", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -206949,7 +219513,10 @@ "plasmid_name": "mTALEAD 16S rRNA-1139T8C", "sequence-type": "addgene-full", "addgene_id": "210837", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "att_sites": [ "attB1", @@ -206988,7 +219555,10 @@ "plasmid_name": "pHAGE-IGF1R-D1239H", "sequence-type": "addgene-full", "addgene_id": "116412", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -207038,7 +219608,9 @@ "plasmid_name": "pMpGWB131", "sequence-type": "depositor-full", "addgene_id": "68585", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -207086,7 +219658,10 @@ "plasmid_name": "pLenti-Zyxin-C (aa139-371)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187695", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "att_sites": [ "attB1", @@ -207149,7 +219724,6 @@ "plasmid_name": "IDG_CACNA2D3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161683", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -207208,7 +219782,10 @@ "plasmid_name": "pLenti CMV/TO Puro DEST (670-1)", "sequence-type": "addgene-full", "addgene_id": "17293", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -207275,7 +219852,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term SRSF1", "sequence-type": "addgene-full", "addgene_id": "187575", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -207319,7 +219899,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16 E7 Mutant 2", "sequence-type": "addgene-full", "addgene_id": "191546", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "att_sites": [ "attB1", @@ -207365,7 +219948,10 @@ "plasmid_name": "pHAGE-XRN1__PRKCE", "sequence-type": "addgene-full", "addgene_id": "116846", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -207416,7 +220002,10 @@ "plasmid_name": "PB-TAC-Cas9", "sequence-type": "addgene-full", "addgene_id": "120352", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2018.12.008", + "https://www.ncbi.nlm.nih.gov/pubmed/30639212" + ], "kit": null, "att_sites": [ "attR1", @@ -207481,7 +220070,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab18", "sequence-type": "addgene-full", "addgene_id": "166431", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -207525,7 +220113,10 @@ "plasmid_name": "pGWB413", "sequence-type": "depositor-full", "addgene_id": "74807", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -207573,7 +220164,10 @@ "plasmid_name": "pHAGE-PDGFRA", "sequence-type": "addgene-full", "addgene_id": "116769", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116769.addgene-full.gb" }, @@ -207582,7 +220176,10 @@ "plasmid_name": "pYPQ146-ZmUbi-tRNA", "sequence-type": "addgene-full", "addgene_id": "158404", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00953-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34168320" + ], "kit": null, "att_sites": [ "attL2", @@ -207615,7 +220212,10 @@ "plasmid_name": "pMOS010: pLX304-CheRiff-GFP", "sequence-type": "depositor-full", "addgene_id": "62986", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3000", + "https://www.ncbi.nlm.nih.gov/pubmed/24952910" + ], "kit": null, "att_sites": [ "attB1", @@ -207680,7 +220280,9 @@ "plasmid_name": "pDestTol2-QUAS:GFP-CAAX", "sequence-type": "addgene-full", "addgene_id": "184813", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "att_sites": [ "attB1", @@ -207722,7 +220324,10 @@ "plasmid_name": "766 p3E-2A-nlsmCherrypA", "sequence-type": "addgene-full", "addgene_id": "195972", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL3", @@ -207761,7 +220366,10 @@ "plasmid_name": "pLenti_CMV_Puro_SFB_GNB1L_WD 7 deletion", "sequence-type": "addgene-full", "addgene_id": "224388", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.07.004", + "https://www.ncbi.nlm.nih.gov/pubmed/37541219" + ], "kit": null, "att_sites": [ "attB1", @@ -207826,7 +220434,10 @@ "plasmid_name": "pDEST40-2XHA-Src-KD", "sequence-type": "addgene-full", "addgene_id": "140312", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -207878,7 +220489,6 @@ "plasmid_name": "R777-E052 Hs.ECT2-nostop", "sequence-type": "depositor-full", "addgene_id": "70336", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -207906,7 +220516,6 @@ "plasmid_name": "p667-UBC-BRSK2-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135253", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -207971,7 +220580,6 @@ "plasmid_name": "IDG_KCNS3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161618", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -208030,7 +220638,10 @@ "plasmid_name": "pDONR221_SLC7A3", "sequence-type": "addgene-full", "addgene_id": "132301", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201404", + "https://www.ncbi.nlm.nih.gov/pubmed/36114003" + ], "kit": null, "att_sites": [ "attL1", @@ -208061,7 +220672,6 @@ "plasmid_name": "pENTR-CreStopDeleted", "sequence-type": "addgene-full", "addgene_id": "139546", - "references": [], "kit": null, "file": "data/addgene_plasmids/139546.addgene-full.gb" }, @@ -208070,7 +220680,10 @@ "plasmid_name": "pSK247", "sequence-type": "addgene-full", "addgene_id": "131148", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/29056345" + ], "kit": null, "att_sites": [ "attR1", @@ -208122,7 +220735,10 @@ "plasmid_name": "pCMU-ERr", "sequence-type": "depositor-full", "addgene_id": "61170", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -208167,7 +220783,10 @@ "plasmid_name": "p3E-rab3db", "sequence-type": "addgene-full", "addgene_id": "109707", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -208198,7 +220817,10 @@ "plasmid_name": "TFORF3147", "sequence-type": "addgene-full", "addgene_id": "144623", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -208258,7 +220880,10 @@ "plasmid_name": "pBA cHA-XERICO", "sequence-type": "addgene-full", "addgene_id": "118666", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -208302,7 +220927,10 @@ "plasmid_name": "RWDD2B_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177001", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -208357,7 +220985,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS2", "sequence-type": "depositor-full", "addgene_id": "20241", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "att_sites": [ "attB1", @@ -208390,7 +221021,9 @@ "plasmid_name": "pDONR221-DDX1", "sequence-type": "addgene-full", "addgene_id": "166160", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -208421,7 +221054,10 @@ "plasmid_name": "pENTR223-BNRF1", "sequence-type": "addgene-full", "addgene_id": "198580", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -208450,7 +221086,6 @@ "plasmid_name": "pCM1.52", "sequence-type": "depositor-full", "addgene_id": "19592", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -208481,7 +221116,10 @@ "plasmid_name": "pDONR221-SLCO2B1_STOP", "sequence-type": "addgene-full", "addgene_id": "161032", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -208512,7 +221150,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.P364L", "sequence-type": "addgene-full", "addgene_id": "81417", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -208544,7 +221185,10 @@ "plasmid_name": "pEPYCeGM0011", "sequence-type": "addgene-full", "addgene_id": "196145", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attL1", @@ -208568,7 +221212,10 @@ "plasmid_name": "pCLXEBR-pTF-cKit", "sequence-type": "addgene-full", "addgene_id": "114293", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "att_sites": [ "attB1", @@ -208622,7 +221269,9 @@ "plasmid_name": "pME-memGFP-P2A", "sequence-type": "depositor-full", "addgene_id": "80809", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL1", @@ -208659,7 +221308,9 @@ "plasmid_name": "pPB-cT3G-cERP2-UBB", "sequence-type": "addgene-full", "addgene_id": "222569", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -208705,7 +221356,10 @@ "plasmid_name": "pYPQ283 (MlCas12a)", "sequence-type": "addgene-full", "addgene_id": "138115", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -208737,7 +221391,10 @@ "plasmid_name": "pDONR221-kcnk6", "sequence-type": "addgene-full", "addgene_id": "208990", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -208768,7 +221425,10 @@ "plasmid_name": "pDONR223_PIK3CG_WT", "sequence-type": "addgene-full", "addgene_id": "81843", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -208801,7 +221461,9 @@ "plasmid_name": "pLenti Dest PuroR R1-R2", "sequence-type": "addgene-full", "addgene_id": "84575", - 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"references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -209632,7 +222345,10 @@ "plasmid_name": "actc1b-mKate2-rab5aa", "sequence-type": "addgene-full", "addgene_id": "109648", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -209674,7 +222390,10 @@ "plasmid_name": "pDONR223_NFE2L2_p.N160S", "sequence-type": "addgene-full", "addgene_id": "81558", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -209686,7 +222405,9 @@ "plasmid_name": "pMpGWB211", "sequence-type": "depositor-full", "addgene_id": "68602", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -209734,7 +222455,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep97", "sequence-type": "addgene-full", "addgene_id": "136850", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -209777,7 +222501,10 @@ "plasmid_name": "pDONR221_SLC52A2", "sequence-type": "addgene-full", "addgene_id": "131902", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -209808,7 +222535,10 @@ "plasmid_name": "TFORF3367", "sequence-type": "addgene-full", "addgene_id": "144843", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -209869,7 +222599,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp15", "sequence-type": "addgene-full", "addgene_id": "168825", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -209898,7 +222631,6 @@ "plasmid_name": "pDEST-Spe4-RfA-mClover3-stop", "sequence-type": "addgene-full", "addgene_id": "186389", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -209945,7 +222677,10 @@ "plasmid_name": "actc1b-mKate2-Pacsin2", "sequence-type": "addgene-full", "addgene_id": "109533", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -209988,7 +222723,10 @@ "plasmid_name": "pDONR221-SLC5A11_STOP", "sequence-type": "depositor-full", "addgene_id": "161383", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -210019,7 +222757,6 @@ "plasmid_name": "35S:YFPc-RabG3b-DN", "sequence-type": "addgene-full", "addgene_id": "102374", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -210054,7 +222791,10 @@ "plasmid_name": "TFORF2941", "sequence-type": "addgene-full", "addgene_id": "144417", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -210114,7 +222854,10 @@ "plasmid_name": "pCAG-Brainbow3.0", "sequence-type": "addgene-full", "addgene_id": "45176", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2450", + "https://www.ncbi.nlm.nih.gov/pubmed/23817127" + ], "kit": null, "att_sites": [ "attB1", @@ -210162,7 +222905,10 @@ "plasmid_name": "pDONR223_PEX3_p.G173E", "sequence-type": "addgene-full", "addgene_id": "81623", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -210194,7 +222940,10 @@ "plasmid_name": "pDONR221-SLC25A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161206", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -210225,7 +222974,10 @@ "plasmid_name": "pNLF1W", "sequence-type": "addgene-full", "addgene_id": "136404", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attR1", @@ -210270,7 +223022,9 @@ "plasmid_name": "p5E TRE-3GV (JDW 1163)", "sequence-type": "addgene-full", "addgene_id": "224476", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -210306,7 +223060,10 @@ "plasmid_name": "pDEST53-LRRK2-WT", "sequence-type": "addgene-full", "addgene_id": "25044", - "references": [], + "references": [ + "https://doi.org/10.1016/j.nbd.2006.04.001", + "https://www.ncbi.nlm.nih.gov/pubmed/16750377" + ], "kit": null, "att_sites": [ "attB1", @@ -210358,7 +223115,10 @@ "plasmid_name": "Luc-Nanog-3'UTR", "sequence-type": "addgene-full", "addgene_id": "63893", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb2366", + "https://www.ncbi.nlm.nih.gov/pubmed/22020437" + ], "kit": null, "att_sites": [ "attB1", @@ -210392,7 +223152,10 @@ "plasmid_name": "pGCS2", "sequence-type": "addgene-full", "addgene_id": "85731", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -210439,7 +223202,10 @@ "plasmid_name": "pDONR P4-P1R-EYFP", "sequence-type": "depositor-full", "addgene_id": "48350", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -210478,7 +223244,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-PGK1", "sequence-type": "depositor-full", "addgene_id": "38071", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -210524,7 +223293,9 @@ "plasmid_name": "pMpGWB101", "sequence-type": "depositor-full", "addgene_id": "68555", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -210570,7 +223341,10 @@ "plasmid_name": "KB501: pMAGIC (L1-R5) hU6::SaCas9 gRNA scaffold; CMV promoter", "sequence-type": "addgene-full", "addgene_id": "121813", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -210608,7 +223382,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_N", "sequence-type": "addgene-full", "addgene_id": "169401", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -210651,7 +223424,6 @@ "plasmid_name": "pLV-EF1-Cre-PGK-Puro", "sequence-type": "addgene-full", "addgene_id": "108543", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -210717,7 +223489,10 @@ "plasmid_name": "A1-LCD-2R-2K+3D", "sequence-type": "addgene-full", "addgene_id": "178680", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -210752,7 +223527,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SMC3", "sequence-type": "addgene-full", "addgene_id": "222554", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -210798,7 +223575,6 @@ "plasmid_name": "p667-UBC-TAOK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189888", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -210842,7 +223618,10 @@ "plasmid_name": "TFORF3089", "sequence-type": "addgene-full", "addgene_id": "144565", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -210902,7 +223681,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp8", "sequence-type": "addgene-full", "addgene_id": "168957", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -210931,7 +223713,10 @@ "plasmid_name": "pHAGE- TRE-DEST-NBioTAP", "sequence-type": "depositor-full", "addgene_id": "53568", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1400648111", + "https://www.ncbi.nlm.nih.gov/pubmed/24550272" + ], "kit": null, "att_sites": [ "attR1", @@ -210989,7 +223774,9 @@ "plasmid_name": "pME-LexA-mODC (no LexOp) (JDW 937)", "sequence-type": "addgene-full", "addgene_id": "224504", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -211022,7 +223809,10 @@ "plasmid_name": "pDONR221-SLC6A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161374", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -211053,7 +223843,10 @@ "plasmid_name": "pDONR223_KRAS_WT", "sequence-type": "addgene-full", "addgene_id": "81751", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -211086,7 +223879,10 @@ "plasmid_name": "pLX304_CdTag-HA_EmptyVector", "sequence-type": "addgene-full", "addgene_id": "221466", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221466.addgene-full.gb" }, @@ -211095,7 +223891,10 @@ "plasmid_name": "pDONR221-MFSD11_STOP", "sequence-type": "addgene-full", "addgene_id": "161094", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -211126,7 +223925,10 @@ "plasmid_name": "TFORF3455", "sequence-type": "addgene-full", "addgene_id": "144931", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -211186,7 +223988,10 @@ "plasmid_name": "PRPF4", "sequence-type": "addgene-full", "addgene_id": "155850", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -211229,7 +224034,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CAMK1G_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158168", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -211295,7 +224099,10 @@ "plasmid_name": "pHAGE-BRAF-V600G", "sequence-type": "addgene-full", "addgene_id": "116205", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -211350,7 +224157,10 @@ "plasmid_name": "pDONR221_MFSD6L", "sequence-type": "addgene-full", "addgene_id": "131870", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -211381,7 +224191,10 @@ "plasmid_name": "TFORF3209", "sequence-type": "addgene-full", "addgene_id": "144685", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -211441,7 +224254,10 @@ "plasmid_name": "5'-3xFLAG Mta1+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212070", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -211481,7 +224297,10 @@ "plasmid_name": "pDONR223_PTEN_p.G129V", "sequence-type": "addgene-full", "addgene_id": "81685", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -211513,7 +224332,6 @@ "plasmid_name": "Hs.KRAS4b K147Q", "sequence-type": "depositor-full", "addgene_id": "83155", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -211539,7 +224357,10 @@ "plasmid_name": "actc1b-mKate2-rab11al", "sequence-type": "addgene-full", "addgene_id": "109595", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -211581,7 +224402,10 @@ "plasmid_name": "pENTR-TC9", "sequence-type": "addgene-full", "addgene_id": "202088", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00319", + "https://www.ncbi.nlm.nih.gov/pubmed/38049144" + ], "kit": null, "att_sites": [ "attL1", @@ -211621,7 +224445,10 @@ "plasmid_name": "pDONR221-ZNF730", "sequence-type": "depositor-full", "addgene_id": "101465", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -211652,7 +224479,10 @@ "plasmid_name": "R619-M87-303: CMV51p> SARS-CoV S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166012", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -211707,7 +224537,10 @@ "plasmid_name": "TFORF3275", "sequence-type": "addgene-full", "addgene_id": "144751", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -211767,7 +224600,10 @@ "plasmid_name": "p3E-rab1ba", "sequence-type": "addgene-full", "addgene_id": "109675", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -211798,7 +224634,10 @@ "plasmid_name": "pDONR223_KIF2B_p.Q430H", "sequence-type": "addgene-full", "addgene_id": "81565", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -211810,7 +224649,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_C4341S", "sequence-type": "addgene-full", "addgene_id": "187156", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -211855,7 +224697,10 @@ "plasmid_name": "pDONR223_SERPINB5_WT", "sequence-type": "addgene-full", "addgene_id": "82898", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -211884,7 +224729,10 @@ "plasmid_name": "pDONR221-SLC1A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161140", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -211916,7 +224764,6 @@ "plasmid_name": "R777-E148 Hs.PAK1-nostop", "sequence-type": "depositor-full", "addgene_id": "70432", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -211945,7 +224792,10 @@ "plasmid_name": "pAG413GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14381", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -212007,7 +224857,10 @@ "plasmid_name": "pMuLE ENTR SV40 PuroR L5-L2", "sequence-type": "depositor-full", "addgene_id": "62165", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -212044,7 +224897,10 @@ "plasmid_name": "pDONR223_RB1_p.A772S", "sequence-type": "addgene-full", "addgene_id": "82803", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -212073,7 +224929,6 @@ "plasmid_name": "pENTR_AtU6p_BsaI_ccdb_gRNA", "sequence-type": "addgene-full", "addgene_id": "225986", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -212110,7 +224965,6 @@ "plasmid_name": "pENTRY4_ Dja6_2", "sequence-type": "addgene-full", "addgene_id": "126895", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -212145,7 +224999,10 @@ "plasmid_name": "RBM10_pLX307", "sequence-type": "addgene-full", "addgene_id": "98371", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98371.addgene-full.gb" }, @@ -212154,7 +225011,10 @@ "plasmid_name": "pDONR221 CARD8 PAM F405G", "sequence-type": "addgene-full", "addgene_id": "169981", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -212185,7 +225045,10 @@ "plasmid_name": "pYPQ292 (AaCas12b)-D570A-TV", "sequence-type": "addgene-full", "addgene_id": "136380", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -212218,7 +225081,10 @@ "plasmid_name": "pDN0603 (pDEST, NatR)", "sequence-type": "addgene-full", "addgene_id": "210482", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210482.addgene-full.gb" }, @@ -212227,7 +225093,10 @@ "plasmid_name": "pHAGE-ARAF", "sequence-type": "addgene-full", "addgene_id": "116713", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -212281,7 +225150,10 @@ "plasmid_name": "pCDNA5_C12orf49-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "155112", - "references": [], + "references": [ + "https://doi.org/10.1038/s42255-020-0211-z", + "https://www.ncbi.nlm.nih.gov/pubmed/32694731" + ], "kit": null, "att_sites": [ "attB1", @@ -212324,7 +225196,6 @@ "plasmid_name": "pcDNA-Pom121 mApple", "sequence-type": "addgene-full", "addgene_id": "187674", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -212376,7 +225247,10 @@ "plasmid_name": "tetO-SOX9", "sequence-type": "addgene-full", "addgene_id": "170703", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170703.addgene-full.gb" }, @@ -212385,7 +225259,6 @@ "plasmid_name": "IDG_SCNN1B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161662", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -212444,7 +225317,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) CRIP2", "sequence-type": "addgene-full", "addgene_id": "107509", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB1", @@ -212506,7 +225382,6 @@ "plasmid_name": "pcDNA-DEST47-Noa1-GFP", "sequence-type": "addgene-full", "addgene_id": "191968", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -212558,7 +225433,10 @@ "plasmid_name": "pHAGE-PIK3CA-E109_I112delinsD", "sequence-type": "addgene-full", "addgene_id": "116468", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -212612,7 +225490,10 @@ "plasmid_name": "SMG6", "sequence-type": "addgene-full", "addgene_id": "156020", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -212655,7 +225536,10 @@ "plasmid_name": "pDONR221_SLC22A24", "sequence-type": "addgene-full", "addgene_id": "132000", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -212686,7 +225570,10 @@ "plasmid_name": "pCPP5108", "sequence-type": "addgene-full", "addgene_id": "128726", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -212717,7 +225604,10 @@ "plasmid_name": "pDONR221_SLC9A3", "sequence-type": "addgene-full", "addgene_id": "132234", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132234.addgene-full.gb" }, @@ -212726,7 +225616,10 @@ "plasmid_name": "pJRA109", "sequence-type": "addgene-full", "addgene_id": "209342", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -212766,7 +225659,10 @@ "plasmid_name": "pDONR223_B2M_p.C100S", "sequence-type": "addgene-full", "addgene_id": "81308", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -212798,7 +225694,9 @@ "plasmid_name": "pMpGWB336", "sequence-type": "depositor-full", "addgene_id": "68664", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -212845,7 +225743,10 @@ "plasmid_name": "LR (hsp70I: cPLA2-mK2)", "sequence-type": "addgene-full", "addgene_id": "162564", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.04.016", + "https://www.ncbi.nlm.nih.gov/pubmed/27203112" + ], "kit": null, "att_sites": [ "attB1", @@ -212889,7 +225790,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS3", "sequence-type": "addgene-full", "addgene_id": "145345", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -212932,7 +225836,10 @@ "plasmid_name": "C413-E45: attB4-hr5-ie1p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162930", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -212961,7 +225868,10 @@ "plasmid_name": "pPB-cT3G-cERP2-NR5A1", "sequence-type": "addgene-full", "addgene_id": "192915", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -213007,7 +225917,10 @@ "plasmid_name": "pMXs-Gfi1", "sequence-type": "addgene-full", "addgene_id": "158531", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.55249", + "https://www.ncbi.nlm.nih.gov/pubmed/32602462" + ], "kit": null, "att_sites": [ "attB1", @@ -213038,7 +225951,10 @@ "plasmid_name": "pINDUCER-21-HOXA5", "sequence-type": "addgene-full", "addgene_id": "97040", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "att_sites": [ "attB1", @@ -213094,7 +226010,10 @@ "plasmid_name": "pDONR221-LETM1_STOP", "sequence-type": "addgene-full", "addgene_id": "161456", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -213125,7 +226044,10 @@ "plasmid_name": "pENTR223-BBLF1", "sequence-type": "addgene-full", "addgene_id": "195768", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -213154,7 +226076,10 @@ "plasmid_name": "p5Etmem88aE1", "sequence-type": "addgene-full", "addgene_id": "90112", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -213185,7 +226110,10 @@ "plasmid_name": "pDONR223_MAGEC2_p.G74V", "sequence-type": "addgene-full", "addgene_id": "81393", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -213217,7 +226145,10 @@ "plasmid_name": "pDD104 (Peft-3::Cre)", "sequence-type": "depositor-full", "addgene_id": "47551", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2641", + "https://www.ncbi.nlm.nih.gov/pubmed/23995389" + ], "kit": null, "att_sites": [ "attB1", @@ -213258,7 +226189,10 @@ "plasmid_name": "pCFJ2443 - [1-2] ENTR - Fluor - ce-mMaple3(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159867", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -213289,7 +226223,10 @@ "plasmid_name": "pHAGE-PIK3CA-Q546K", "sequence-type": "addgene-full", "addgene_id": "116527", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -213344,7 +226281,10 @@ "plasmid_name": "pENTR-TARDBP-G368A", "sequence-type": "addgene-full", "addgene_id": "141325", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "att_sites": [ "attL1", @@ -213375,7 +226315,10 @@ "plasmid_name": "pDONR221-MFSD13A_STOP", "sequence-type": "depositor-full", "addgene_id": "161118", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -213406,7 +226349,9 @@ "plasmid_name": "p3E-CMVmin:nlsGFP pA", "sequence-type": "depositor-full", "addgene_id": "80821", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -213449,7 +226394,6 @@ "plasmid_name": "pDONR221-CTSB", "sequence-type": "addgene-full", "addgene_id": "158443", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -213478,7 +226422,10 @@ "plasmid_name": "pENTR-HLA-A2_GFP", "sequence-type": "addgene-full", "addgene_id": "85161", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201343671", + "https://www.ncbi.nlm.nih.gov/pubmed/24293164" + ], "kit": null, "att_sites": [ "attL1", @@ -213513,7 +226460,6 @@ "plasmid_name": "pMx/ATP9A-HA", "sequence-type": "addgene-full", "addgene_id": "209230", - "references": [], "kit": null, "file": "data/addgene_plasmids/209230.addgene-full.gb" }, @@ -213522,7 +226468,10 @@ "plasmid_name": "372 pTol2-fli1ep:EGFPDest", "sequence-type": "depositor-full", "addgene_id": "73491", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -213574,7 +226523,9 @@ "plasmid_name": "pDEST mfap4:tdTomato", "sequence-type": "addgene-full", "addgene_id": "135214", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "att_sites": [ "attB1", @@ -213618,7 +226569,10 @@ "plasmid_name": "pRU295", "sequence-type": "addgene-full", "addgene_id": "167694", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -213666,7 +226620,6 @@ "plasmid_name": "R777-E096 Hs.FNTB-nostop", "sequence-type": "depositor-full", "addgene_id": "70380", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -213695,7 +226648,10 @@ "plasmid_name": "pGM34DEST", "sequence-type": "depositor-full", "addgene_id": "74756", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301705", + "https://www.ncbi.nlm.nih.gov/pubmed/30504365" + ], "kit": null, "att_sites": [ "attR1", @@ -213723,7 +226679,10 @@ "plasmid_name": "pLX304-BCL-XL-499/500R", "sequence-type": "addgene-full", "addgene_id": "203575", - "references": [], + "references": [ + "https://doi.org/10.1158/1078-0432.CCR-22-0669", + "https://www.ncbi.nlm.nih.gov/pubmed/35776130" + ], "kit": null, "att_sites": [ "attB1", @@ -213782,7 +226741,10 @@ "plasmid_name": "pDONR221 NLRP1 P1214R", "sequence-type": "addgene-full", "addgene_id": "166822", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -213815,7 +226777,10 @@ "plasmid_name": "pDR-GW AT1.03", "sequence-type": "addgene-full", "addgene_id": "28003", - "references": [], + "references": [ + "https://doi.org/10.1042/BJ20100946", + "https://www.ncbi.nlm.nih.gov/pubmed/20854260" + ], "kit": null, "att_sites": [ "attB1", @@ -213859,7 +226824,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP3", "sequence-type": "addgene-full", "addgene_id": "141257", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -213883,7 +226851,10 @@ "plasmid_name": "pAG425GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14154", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -213943,7 +226914,10 @@ "plasmid_name": "pHAGE-PDGFRB-T369M", "sequence-type": "addgene-full", "addgene_id": "116455", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -213994,7 +226968,6 @@ "plasmid_name": "pDONR221-RBM11", "sequence-type": "addgene-full", "addgene_id": "192748", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -214025,7 +226998,10 @@ "plasmid_name": "pMXs-ms-Sox1", "sequence-type": "depositor-full", "addgene_id": "50778", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "att_sites": [ "attB1", @@ -214047,7 +227023,10 @@ "plasmid_name": "pYPQ290-D570A-SRDX", "sequence-type": "addgene-full", "addgene_id": "129682", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -214079,7 +227058,10 @@ "plasmid_name": "R989-X09-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) G12D", "sequence-type": "addgene-full", "addgene_id": "159541", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -214125,7 +227107,10 @@ "plasmid_name": "pBullet-cg-n", "sequence-type": "depositor-full", "addgene_id": "53069", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -214162,7 +227147,9 @@ "plasmid_name": "pLenti Lifeact-EGFP BlastR", "sequence-type": "addgene-full", "addgene_id": "84383", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "att_sites": [ "attB1", @@ -214229,7 +227216,10 @@ "plasmid_name": "pYPQ262B-ABE8e", "sequence-type": "addgene-full", "addgene_id": "161524", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-00827-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33398158" + ], "kit": null, "att_sites": [ "attL1", @@ -214262,7 +227252,10 @@ "plasmid_name": "pLenti-BLRR", "sequence-type": "addgene-full", "addgene_id": "158958", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkaa669", + "https://www.ncbi.nlm.nih.gov/pubmed/32797168" + ], "kit": null, "att_sites": [ "attB1", @@ -214325,7 +227318,10 @@ "plasmid_name": "pHAGE-PIK3CG-R130Q", "sequence-type": "addgene-full", "addgene_id": "116581", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -214380,7 +227376,10 @@ "plasmid_name": "pDONR221_SLC7A6", "sequence-type": "addgene-full", "addgene_id": "132209", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -214411,7 +227410,10 @@ "plasmid_name": "pGWT35S-TIM21(1\u201350)-Citrine", "sequence-type": "addgene-full", "addgene_id": "182584", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "att_sites": [ "attB1", @@ -214457,7 +227459,6 @@ "plasmid_name": "R777-E170 Hs.PIK3CG-nostop", "sequence-type": "depositor-full", "addgene_id": "70454", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -214486,7 +227487,9 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ash-mKate2-splitmVenusN", "sequence-type": "depositor-full", "addgene_id": "69582", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "att_sites": [ "attB1", @@ -214552,7 +227555,10 @@ "plasmid_name": "pMuLE ENTR H1 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62103", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -214585,7 +227591,10 @@ "plasmid_name": "pDONR223_OR2G6_p.I177F", "sequence-type": "addgene-full", "addgene_id": "81335", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -214617,7 +227626,10 @@ "plasmid_name": "pKI-cjPLP1e2-P15L-_lox", "sequence-type": "addgene-full", "addgene_id": "129756", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-018-37990-w", + "https://www.ncbi.nlm.nih.gov/pubmed/30728412" + ], "kit": null, "att_sites": [ "attB3", @@ -214652,7 +227664,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CSNK1A1L_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170591", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -214718,7 +227729,10 @@ "plasmid_name": "pCMB-TLEr", "sequence-type": "depositor-full", "addgene_id": "61188", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -214764,7 +227778,10 @@ "plasmid_name": "pHAGE-RAF1-V537I", "sequence-type": "addgene-full", "addgene_id": "116661", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -214814,7 +227831,10 @@ "plasmid_name": "pPB-cT3G-cERP2-RUNX1", "sequence-type": "addgene-full", "addgene_id": "192928", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -214860,7 +227880,10 @@ "plasmid_name": "pDONR223 GABARAPL2 G116", "sequence-type": "addgene-full", "addgene_id": "123088", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -214889,7 +227912,10 @@ "plasmid_name": "pENTR-R2-WPRE-pA-L4", "sequence-type": "addgene-full", "addgene_id": "141063", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL4", @@ -214922,7 +227948,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(L301R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128654", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -214972,7 +228001,10 @@ "plasmid_name": "pDONR221_SLC6A4", "sequence-type": "addgene-full", "addgene_id": "132172", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -215003,7 +228035,10 @@ "plasmid_name": "ZNF9", "sequence-type": "addgene-full", "addgene_id": "156152", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -215046,7 +228081,10 @@ "plasmid_name": "pDONR223_ELK1_WT", "sequence-type": "addgene-full", "addgene_id": "82207", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -215075,7 +228113,10 @@ "plasmid_name": "pAAV_MLP-BC1405-luc2", "sequence-type": "addgene-full", "addgene_id": "214670", - 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"references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -215278,7 +228327,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP12", "sequence-type": "addgene-full", "addgene_id": "169385", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -215319,7 +228367,10 @@ "plasmid_name": "pME-QF", "sequence-type": "depositor-full", "addgene_id": "61375", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2013.06.012", + "https://www.ncbi.nlm.nih.gov/pubmed/23792917" + ], "kit": null, "att_sites": [ "attL1", @@ -215355,7 +228406,10 @@ "plasmid_name": "pDONR221-SFXN5", "sequence-type": "addgene-full", "addgene_id": "132292", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -215386,7 +228440,10 @@ "plasmid_name": "pENTR223-PARK7C53A", "sequence-type": "addgene-full", "addgene_id": "115179", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attL1", @@ -215415,7 +228472,10 @@ "plasmid_name": "pHAGE-ERBB2-G222C", "sequence-type": "addgene-full", "addgene_id": "116330", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -215469,7 +228529,10 @@ "plasmid_name": "MiniCoopR U6:gRNA p53, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118841", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -215513,7 +228576,10 @@ "plasmid_name": "TFORF3328", "sequence-type": "addgene-full", "addgene_id": "144804", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -215573,7 +228639,10 @@ "plasmid_name": "p3E-rab34b", "sequence-type": "addgene-full", "addgene_id": "109694", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -215604,7 +228673,10 @@ "plasmid_name": "pcDNA3.2/NS1", "sequence-type": "addgene-full", "addgene_id": "120824", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -215654,7 +228726,6 @@ "plasmid_name": "R777-E276 Hs.RHEB-nostop", "sequence-type": "depositor-full", "addgene_id": "70560", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -215682,7 +228753,10 @@ "plasmid_name": "pDONR221_SLC13A5", "sequence-type": "addgene-full", "addgene_id": "131945", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -215713,7 +228787,10 @@ "plasmid_name": "pDONR223_CTCF_p.R377C", "sequence-type": "addgene-full", "addgene_id": "81584", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -215745,7 +228822,10 @@ "plasmid_name": "pEBTet-SNAP-Cep57", "sequence-type": "addgene-full", "addgene_id": "136817", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -215793,7 +228873,10 @@ "plasmid_name": "pDONR223_CGREF1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82879", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -215822,7 +228905,10 @@ "plasmid_name": "5'-BirA-FLAG Chtop+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212091", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -215863,7 +228949,10 @@ "plasmid_name": "pLXI_TRC401 SMARCB1 var 2", "sequence-type": "addgene-full", "addgene_id": "111182", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.44161", + "https://www.ncbi.nlm.nih.gov/pubmed/30860482" + ], "kit": null, "att_sites": [ "attB1", @@ -215917,7 +229006,10 @@ "plasmid_name": "pWPI-TFDP2", "sequence-type": "addgene-full", "addgene_id": "114300", - "references": [], + "references": [ + "https://doi.org/10.4161/cc.25834", + "https://www.ncbi.nlm.nih.gov/pubmed/23907129" + ], "kit": null, "att_sites": [ "attB1", @@ -215975,7 +229067,10 @@ "plasmid_name": "pDONR223_NRAS_p.G12A", "sequence-type": "addgene-full", "addgene_id": "81664", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -216007,7 +229102,10 @@ "plasmid_name": "p3E-Dnm2b-DN", "sequence-type": "addgene-full", "addgene_id": "109574", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -216038,7 +229136,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp13", "sequence-type": "addgene-full", "addgene_id": "168862", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -216067,7 +229168,10 @@ "plasmid_name": "pENT-L1-Kozak-EGFP-GPI-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186355", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL1", @@ -216104,7 +229208,10 @@ "plasmid_name": "pME-mTagBFP-CAAX", "sequence-type": "depositor-full", "addgene_id": "75149", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -216139,7 +229246,10 @@ "plasmid_name": "pEN_TT 3xFLAG ID2", "sequence-type": "addgene-full", "addgene_id": "98390", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98390.addgene-full.gb" }, @@ -216148,7 +229258,10 @@ "plasmid_name": "pDONR221-MICU1-mEF", "sequence-type": "depositor-full", "addgene_id": "31765", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09358", + "https://www.ncbi.nlm.nih.gov/pubmed/20693986" + ], "kit": null, "att_sites": [ "attL1", @@ -216179,7 +229292,10 @@ "plasmid_name": "P1_Firre_1.49_pDONR221", "sequence-type": "addgene-full", "addgene_id": "195204", - "references": [], + "references": [ + "https://doi.org/10.1038/nsmb.2764", + "https://www.ncbi.nlm.nih.gov/pubmed/24463464" + ], "kit": null, "att_sites": [ "attL1", @@ -216210,7 +229326,10 @@ "plasmid_name": "pDONR223_TP53_p.P278H", "sequence-type": "addgene-full", "addgene_id": "82756", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -216240,7 +229359,10 @@ "plasmid_name": "IG301: pMVP (L1-R5) CMV promoter", "sequence-type": "addgene-full", "addgene_id": "121692", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -216275,7 +229397,10 @@ "plasmid_name": "SUN2delSUNec", "sequence-type": "addgene-full", "addgene_id": "130847", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attL1", @@ -216308,7 +229433,10 @@ "plasmid_name": "JDW 742 (pDONR221-EGFP-KRAS4B-G12V)", "sequence-type": "addgene-full", "addgene_id": "156403", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attL1", @@ -216345,7 +229473,10 @@ "plasmid_name": "pDEST_6xUAS:Lamp1-mGFP", "sequence-type": "addgene-full", "addgene_id": "192356", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.82094", + "https://www.ncbi.nlm.nih.gov/pubmed/36398880" + ], "kit": null, "att_sites": [ "attB1", @@ -216389,7 +229520,10 @@ "plasmid_name": "pEntry_MERS-CoV-NS3", "sequence-type": "depositor-full", "addgene_id": "168827", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -216418,7 +229552,10 @@ "plasmid_name": "A1-LCD-9F+6Y", "sequence-type": "addgene-full", "addgene_id": "178661", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -216453,7 +229590,10 @@ "plasmid_name": "pCBL101gw", "sequence-type": "addgene-full", "addgene_id": "199725", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad231", + "https://www.ncbi.nlm.nih.gov/pubmed/37070560" + ], "kit": null, "att_sites": [ "attR1", @@ -216499,7 +229639,10 @@ "plasmid_name": "pwP", "sequence-type": "depositor-full", "addgene_id": "22519", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "att_sites": [ "attB1", @@ -216537,7 +229680,10 @@ "plasmid_name": "pCellFree_G03", "sequence-type": "depositor-full", "addgene_id": "67137", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "att_sites": [ "attR1", @@ -216579,7 +229725,6 @@ "plasmid_name": "R777-E293 Hs.RPS6KA3", "sequence-type": "addgene-full", "addgene_id": "70577", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -216607,7 +229752,10 @@ "plasmid_name": "HB901: pMVP (L3-L2) polyA", "sequence-type": "addgene-full", "addgene_id": "121746", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -216639,7 +229787,10 @@ "plasmid_name": "pDONR223_CFLAR_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82936", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -216668,7 +229819,10 @@ "plasmid_name": "pDONR223_IDH2_p.T331M", "sequence-type": "addgene-full", "addgene_id": "81450", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -216700,7 +229854,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_DelNTerm_160-371AA", "sequence-type": "addgene-full", "addgene_id": "221487", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -216760,7 +229917,10 @@ "plasmid_name": "pGLTR-X-PURO", "sequence-type": "depositor-full", "addgene_id": "58246", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "att_sites": [ "attR1", @@ -216820,7 +229980,9 @@ "plasmid_name": "nTALECD for_MSH1 exon5_1397NC", "sequence-type": "addgene-full", "addgene_id": "193380", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "att_sites": [ "attB1", @@ -216867,7 +230029,10 @@ "plasmid_name": "pDONR221-SLC13A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161075", - 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"references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -217767,7 +230988,10 @@ "plasmid_name": "p3E-2a-tdTomato", "sequence-type": "depositor-full", "addgene_id": "67707", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "att_sites": [ "attL3", @@ -217800,7 +231024,10 @@ "plasmid_name": "TFORF3363", "sequence-type": "addgene-full", "addgene_id": "144839", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -217860,7 +231087,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.E453Q", "sequence-type": "addgene-full", "addgene_id": "82844", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -217889,7 +231119,6 @@ "plasmid_name": "R777-E200 Hs.PRKAG1-nostop", "sequence-type": "depositor-full", "addgene_id": "70484", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -217917,7 +231146,10 @@ "plasmid_name": "p3E-mCherry", "sequence-type": "addgene-full", "addgene_id": "108884", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "att_sites": [ "attL3", @@ -217952,7 +231184,10 @@ "plasmid_name": "pAG415GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14337", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -218014,7 +231249,10 @@ "plasmid_name": "GCH1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98336", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -218074,7 +231312,10 @@ "plasmid_name": "pDONR223_KRAS_p.D33E", "sequence-type": "addgene-full", "addgene_id": "81659", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -218107,7 +231348,10 @@ "plasmid_name": "pDestattB (pCM268)", "sequence-type": "addgene-full", "addgene_id": "68313", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.23989", + "https://www.ncbi.nlm.nih.gov/pubmed/23723152" + ], "kit": null, "att_sites": [ "attR3", @@ -218149,7 +231393,10 @@ "plasmid_name": "pMLS544", "sequence-type": "addgene-full", "addgene_id": "188882", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "att_sites": [ "attB1", @@ -218181,7 +231428,10 @@ "plasmid_name": "pDONR223_LacZ", "sequence-type": "depositor-full", "addgene_id": "25893", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "att_sites": [ "attB2", @@ -218213,7 +231463,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf10", "sequence-type": "addgene-full", "addgene_id": "158380", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -218258,7 +231511,10 @@ "plasmid_name": "pDEST myc MOV10 K530A", "sequence-type": "depositor-full", "addgene_id": "51719", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.03.017", + "https://www.ncbi.nlm.nih.gov/pubmed/24726324" + ], "kit": null, "att_sites": [ "attB1", @@ -218307,7 +231563,10 @@ "plasmid_name": "TFORF3526", "sequence-type": "depositor-full", "addgene_id": "145002", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -218367,7 +231626,10 @@ "plasmid_name": "pME-TCAP", "sequence-type": "addgene-full", "addgene_id": "109549", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -218398,7 +231660,10 @@ "plasmid_name": "pENT-L3-eBra-L4", "sequence-type": "addgene-full", "addgene_id": "186368", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL3", @@ -218429,7 +231694,10 @@ "plasmid_name": "pDest40 DHFR.dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134735", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "att_sites": [ "attB1", @@ -218481,7 +231749,10 @@ "plasmid_name": "pLV[TetOn]-Puro-TRE3G>mAscl1", "sequence-type": "addgene-full", "addgene_id": "198755", - "references": [], + "references": [ + "https://doi.org/10.1038/s41380-021-01117-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33972691" + ], "kit": null, "att_sites": [ "attB1", @@ -218544,7 +231815,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-YTHDF2", "sequence-type": "depositor-full", "addgene_id": "38089", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -218590,7 +231864,10 @@ "plasmid_name": "pDONR221-MFSD5_STOP", "sequence-type": "addgene-full", "addgene_id": "161107", - 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"references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -218982,7 +232283,10 @@ "plasmid_name": "pMLS415", "sequence-type": "addgene-full", "addgene_id": "114272", - "references": [], + "references": [ + "https://doi.org/10.17912/DDVH-BG64", + "https://www.ncbi.nlm.nih.gov/pubmed/32550388" + ], "kit": null, "att_sites": [ "attL1", @@ -219015,7 +232319,9 @@ "plasmid_name": "pME H2B mCerulean (JDW 1150)", "sequence-type": "addgene-full", "addgene_id": "224543", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -219052,7 +232358,10 @@ "plasmid_name": "p5E_GGWDest+", "sequence-type": "depositor-full", "addgene_id": "49319", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -219090,7 +232399,10 @@ "plasmid_name": "pDONR221-SLC45A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161333", - 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"references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -220677,7 +234096,10 @@ "plasmid_name": "pHAGE-BRAF-N486D", "sequence-type": "addgene-full", "addgene_id": "116186", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -220728,7 +234150,10 @@ "plasmid_name": "pINDUCER21-puro_TAOK3", "sequence-type": "addgene-full", "addgene_id": "209778", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -220784,7 +234209,10 @@ "plasmid_name": "CNOT3", "sequence-type": "addgene-full", "addgene_id": "155467", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -220827,7 +234255,10 @@ "plasmid_name": "TFORF3030", "sequence-type": "addgene-full", "addgene_id": "144506", - 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"references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -221202,7 +234652,10 @@ "plasmid_name": "A1-LCD+7R+12D", "sequence-type": "addgene-full", "addgene_id": "178678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -221238,7 +234691,10 @@ "plasmid_name": "R620-M12-303: CMV51p> SARS-CoV-2 S(1-1208)-2P-T4f-3C-His8-Strep2x2 B.1.351", "sequence-type": "addgene-full", "addgene_id": "170196", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -221294,7 +234750,10 @@ "plasmid_name": "pDONR-IAA4_no stop", "sequence-type": "depositor-full", "addgene_id": "83866", - 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"references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -221424,7 +234892,6 @@ "plasmid_name": "His SUMO TEV W131G SPOP 1-374", "sequence-type": "addgene-full", "addgene_id": "197019", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -221464,7 +234931,10 @@ "plasmid_name": "TFORF3476", "sequence-type": "addgene-full", "addgene_id": "144952", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -221524,7 +234994,10 @@ "plasmid_name": "pLX302 PCSK5-V5 puro", "sequence-type": "addgene-full", "addgene_id": "98389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "att_sites": [ "attB1", @@ -221585,7 +235058,10 @@ "plasmid_name": "pMpGWBs02", "sequence-type": "addgene-full", "addgene_id": "222478", - 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"references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -221809,7 +235297,10 @@ "plasmid_name": "actc1b-mKate2-rab26", "sequence-type": "addgene-full", "addgene_id": "109616", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -221851,7 +235342,10 @@ "plasmid_name": "pDON223 Spike S982A", "sequence-type": "addgene-full", "addgene_id": "180067", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -221880,7 +235374,6 @@ "plasmid_name": "R777-E248 Hs.RASGRP3-nostop", "sequence-type": "depositor-full", "addgene_id": "70532", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -221908,7 +235401,10 @@ "plasmid_name": "pGL4_CRE-CMVmin-luc2", "sequence-type": "addgene-full", "addgene_id": "194384", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -221953,7 +235449,10 @@ "plasmid_name": "TFORF3410", "sequence-type": "addgene-full", "addgene_id": "144886", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -222013,7 +235512,10 @@ "plasmid_name": "pAG305GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14281", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -222072,7 +235574,10 @@ "plasmid_name": "pDONR223-ZNF174", "sequence-type": "addgene-full", "addgene_id": "88091", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -222101,7 +235606,10 @@ "plasmid_name": "pDONR221-SLC14A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161123", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -222132,7 +235640,10 @@ "plasmid_name": "pDONR223_SAMHD1_p.I515T", "sequence-type": "addgene-full", "addgene_id": "81506", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -222164,7 +235675,10 @@ "plasmid_name": "pDONR223_RBM10_p.E4K", "sequence-type": "addgene-full", "addgene_id": "82860", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -222195,7 +235709,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp15", "sequence-type": "depositor-full", "addgene_id": "168875", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -222224,7 +235741,10 @@ "plasmid_name": "pQLinkHD_mTFP1", "sequence-type": "addgene-full", "addgene_id": "118858", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "att_sites": [ "attB1", @@ -222261,7 +235781,10 @@ "plasmid_name": "pHAGE-ERBB2-E321G", "sequence-type": "addgene-full", "addgene_id": "116329", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -222315,7 +235838,10 @@ "plasmid_name": "TFORF2973", "sequence-type": "addgene-full", "addgene_id": "144449", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -222375,7 +235901,10 @@ "plasmid_name": "pDONR221-ZNF507", "sequence-type": "depositor-full", "addgene_id": "101565", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -222406,7 +235935,6 @@ "plasmid_name": "pCWX-R4DESTR2-PGK-PURO", "sequence-type": "addgene-full", "addgene_id": "114319", - "references": [], "kit": null, "att_sites": [ "attR2", @@ -222464,7 +235992,10 @@ "plasmid_name": "ACO2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98312", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -222524,7 +236055,10 @@ "plasmid_name": "pDONR221-SLC27A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161258", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -222555,7 +236089,10 @@ "plasmid_name": "5'-BirA-FLAG Kdm1a-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212088", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -222596,7 +236133,10 @@ "plasmid_name": "GFP-muSOX", "sequence-type": "addgene-full", "addgene_id": "131701", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.37663", + "https://www.ncbi.nlm.nih.gov/pubmed/30281021" + ], "kit": null, "file": "data/addgene_plasmids/131701.addgene-full.gb" }, @@ -222605,7 +236145,10 @@ "plasmid_name": "pSLIK 3XFLAG-wtGATA6-3XAU1 neo", "sequence-type": "addgene-full", "addgene_id": "72618", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "att_sites": [ "attB1", @@ -222673,7 +236216,6 @@ "plasmid_name": "p41Hyg 3-F GW", "sequence-type": "addgene-full", "addgene_id": "58555", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -222729,7 +236271,10 @@ "plasmid_name": "TFORF3164", "sequence-type": "addgene-full", "addgene_id": "144640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -222789,7 +236334,6 @@ "plasmid_name": "R777-E018 Hs.CCND1-nostop", "sequence-type": "depositor-full", "addgene_id": "70302", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -222818,7 +236362,10 @@ "plasmid_name": "pDONR223_CHD2_p.P474R", "sequence-type": "addgene-full", "addgene_id": "81474", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -222850,7 +236397,10 @@ "plasmid_name": "pDONR223_DECR1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82989", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -222879,7 +236429,10 @@ "plasmid_name": "pDONR221-SLC12A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161051", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -222910,7 +236463,10 @@ "plasmid_name": "pDONR223_POT1_WT", "sequence-type": "addgene-full", "addgene_id": "81820", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -222942,7 +236498,10 @@ "plasmid_name": "pDONR223_C19orf48_WT", "sequence-type": "addgene-full", "addgene_id": "81794", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -222954,7 +236513,10 @@ "plasmid_name": "pMMK ENTR 2 CMV mKO2-hCdt1", "sequence-type": "addgene-full", "addgene_id": "206282", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL3", @@ -222981,7 +236543,10 @@ "plasmid_name": "pGWB451", "sequence-type": "depositor-full", "addgene_id": "74833", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -223032,7 +236597,6 @@ "plasmid_name": "R777-E214 Hs.RAF1-nostop", "sequence-type": "depositor-full", "addgene_id": "70498", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -223060,7 +236624,10 @@ "plasmid_name": "pMMLV-mRFP1-P2A-Puro", "sequence-type": "addgene-full", "addgene_id": "160228", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.07.009", + "https://www.ncbi.nlm.nih.gov/pubmed/34352222" + ], "kit": null, "att_sites": [ "attB1", @@ -223097,7 +236664,10 @@ "plasmid_name": "pDEST17-UbE2G2", "sequence-type": "addgene-full", "addgene_id": "15791", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "att_sites": [ "attB1", @@ -223129,7 +236699,10 @@ "plasmid_name": "pHAGE-AXL-Q83R", "sequence-type": "addgene-full", "addgene_id": "116120", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -223178,7 +236751,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp12", "sequence-type": "addgene-full", "addgene_id": "168909", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -223207,7 +236783,10 @@ "plasmid_name": "pKRG3-mU6-PUb-hSpCas9-pAc", "sequence-type": "addgene-full", "addgene_id": "162163", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-80436-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33436886" + ], "kit": null, "att_sites": [ "attB2" @@ -223239,7 +236818,10 @@ "plasmid_name": "pSLIK_hygro_3xflag_Luciferase", "sequence-type": "addgene-full", "addgene_id": "136528", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136528.addgene-full.gb" }, @@ -223248,7 +236830,10 @@ "plasmid_name": "pLenti6_YAP1-V5", "sequence-type": "addgene-full", "addgene_id": "173002", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -223305,7 +236890,10 @@ "plasmid_name": "KH001: pMVP (L3-L2) V5 epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121762", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -223340,7 +236928,10 @@ "plasmid_name": "p3E_BAG3wt-eGFP", "sequence-type": "addgene-full", "addgene_id": "98180", - "references": [], + "references": [ + "https://doi.org/10.1007/s00401-014-1344-5", + "https://www.ncbi.nlm.nih.gov/pubmed/25273835" + ], "kit": null, "att_sites": [ "attL3", @@ -223376,7 +236967,10 @@ "plasmid_name": "pENTR223-BALF2", "sequence-type": "addgene-full", "addgene_id": "198578", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -223405,7 +236999,10 @@ "plasmid_name": "pDONR223_EGFR_p.D837A", "sequence-type": "addgene-full", "addgene_id": "82912", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -223435,7 +237032,9 @@ "plasmid_name": "pDONR221-PRDX4", "sequence-type": "addgene-full", "addgene_id": "166198", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -223466,7 +237065,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF3B", "sequence-type": "addgene-full", "addgene_id": "154417", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -223496,7 +237098,6 @@ "plasmid_name": "6xHis-WT-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192092", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -223543,7 +237144,10 @@ "plasmid_name": "pDEST-Spe3-Venus-RfA", "sequence-type": "addgene-full", "addgene_id": "186371", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -223590,7 +237194,6 @@ "plasmid_name": "Cas9 gateway compatible", "sequence-type": "addgene-full", "addgene_id": "128321", - "references": [], "kit": null, "file": "data/addgene_plasmids/128321.addgene-full.gb" }, @@ -223599,7 +237202,10 @@ "plasmid_name": "pQCXIP X2 DEST (w270-1)", "sequence-type": "depositor-full", "addgene_id": "17474", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -223646,7 +237252,10 @@ "plasmid_name": "pDONR223_SMAD4_p.G386V", "sequence-type": "addgene-full", "addgene_id": "82772", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -223675,7 +237284,10 @@ "plasmid_name": "TroponinT-GCaMP5-Zeo", "sequence-type": "addgene-full", "addgene_id": "46027", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "att_sites": [ "attB1", @@ -223742,7 +237354,10 @@ "plasmid_name": "pIF4", "sequence-type": "addgene-full", "addgene_id": "196069", - "references": [], + "references": [ + "https://doi.org/10.1128/msphere.00594-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36655998" + ], "kit": null, "att_sites": [ "attB1", @@ -223788,7 +237403,10 @@ "plasmid_name": "MLKS2delTMexp", "sequence-type": "addgene-full", "addgene_id": "130863", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "att_sites": [ "attB1", @@ -223824,7 +237442,10 @@ "plasmid_name": "pAG423GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14365", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -223885,7 +237506,10 @@ "plasmid_name": "CAG FUCCI", "sequence-type": "addgene-full", "addgene_id": "175266", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199637", + "https://www.ncbi.nlm.nih.gov/pubmed/35266986" + ], "kit": null, "att_sites": [ "attB1", @@ -223937,7 +237561,10 @@ "plasmid_name": "pEBTetBl-CLIP-Centrin2", "sequence-type": "addgene-full", "addgene_id": "136833", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -223982,7 +237609,10 @@ "plasmid_name": "pDONR221-TAF15 No Stop", "sequence-type": "addgene-full", "addgene_id": "84896", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1109434108", + "https://www.ncbi.nlm.nih.gov/pubmed/22065782" + ], "kit": null, "att_sites": [ "attL1", @@ -224013,7 +237643,10 @@ "plasmid_name": "pDONR223 SCAF4", "sequence-type": "addgene-full", "addgene_id": "122464", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "att_sites": [ "attL1", @@ -224042,7 +237675,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hADAM10(aa455-550)", "sequence-type": "addgene-full", "addgene_id": "189556", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -224109,7 +237741,10 @@ "plasmid_name": "pDONR221-SLC25A51_STOP", "sequence-type": "addgene-full", "addgene_id": "161185", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -224140,7 +237775,10 @@ "plasmid_name": "pEBTetD-SNAP-POC5", "sequence-type": "addgene-full", "addgene_id": "136787", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136787.addgene-full.gb" }, @@ -224149,7 +237787,10 @@ "plasmid_name": "pDONR223-ZNF706", "sequence-type": "addgene-full", "addgene_id": "88037", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -224178,7 +237819,10 @@ "plasmid_name": "TFORF3344", "sequence-type": "addgene-full", "addgene_id": "144820", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -224238,7 +237882,10 @@ "plasmid_name": "pENTR-L4-UBI-L1R", "sequence-type": "depositor-full", "addgene_id": "45959", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-61779-095-9_8", + "https://www.ncbi.nlm.nih.gov/pubmed/21590398" + ], "kit": null, "att_sites": [ "attL4", @@ -224271,7 +237918,10 @@ "plasmid_name": "pHAGE-EGFR-V742A", "sequence-type": "addgene-full", "addgene_id": "116314", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -224325,7 +237975,6 @@ "plasmid_name": "pREP41xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79023", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -224371,7 +238020,10 @@ "plasmid_name": "pDONR221_SLC17A8", "sequence-type": "addgene-full", "addgene_id": "131961", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -224402,7 +238054,10 @@ "plasmid_name": "TFORF3318", "sequence-type": "addgene-full", "addgene_id": "144794", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -224462,7 +238117,10 @@ "plasmid_name": "pME-actn2", "sequence-type": "addgene-full", "addgene_id": "109550", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -224493,7 +238151,10 @@ "plasmid_name": "TFORF2998", "sequence-type": "addgene-full", "addgene_id": "144474", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -224553,7 +238214,6 @@ "plasmid_name": "p667-UBC-VRK3-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189902", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -224618,7 +238278,10 @@ "plasmid_name": "pDONR223_HAPLN1_p.S326N", "sequence-type": "addgene-full", "addgene_id": "81640", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -224650,7 +238313,10 @@ "plasmid_name": "pAG423GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14198", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -224712,7 +238378,10 @@ "plasmid_name": "pGL4_EGR1p-BC1490-luc2", "sequence-type": "addgene-full", "addgene_id": "214654", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -224756,7 +238425,10 @@ "plasmid_name": "pDONR223_PPARG_WT", "sequence-type": "addgene-full", "addgene_id": "82223", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -224785,7 +238457,10 @@ "plasmid_name": "pInducer20 EGFP-TEADi", "sequence-type": "addgene-full", "addgene_id": "140145", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-15301-0", + "https://www.ncbi.nlm.nih.gov/pubmed/32193376" + ], "kit": null, "att_sites": [ "attB1", @@ -224843,7 +238518,10 @@ "plasmid_name": "pDEST15-Eps8L2_367-496", "sequence-type": "addgene-full", "addgene_id": "196538", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attB1", @@ -224877,7 +238555,10 @@ "plasmid_name": "pENTR223-BLRF1", "sequence-type": "addgene-full", "addgene_id": "195771", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -224906,7 +238587,6 @@ "plasmid_name": "pENTR4 CDS A. thaliana PARP1", "sequence-type": "addgene-full", "addgene_id": "175818", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -224930,7 +238610,10 @@ "plasmid_name": "Flag-HA-PARP11", "sequence-type": "addgene-full", "addgene_id": "22556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -224975,7 +238658,10 @@ "plasmid_name": "pDONR221_SLC48A1", "sequence-type": "addgene-full", "addgene_id": "132156", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -225006,7 +238692,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(KTM)-IRES-Neo", "sequence-type": "addgene-full", "addgene_id": "128670", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -225056,7 +238745,6 @@ "plasmid_name": "DDX3X - S583G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216584", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -225085,7 +238773,10 @@ "plasmid_name": "pLenti-PGK-flag-RAP1B-N17-neo", "sequence-type": "addgene-full", "addgene_id": "156176", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156176.addgene-full.gb" }, @@ -225094,7 +238785,10 @@ "plasmid_name": "pAG426GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14251", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -225106,7 +238800,9 @@ "plasmid_name": "pMpGWB308", "sequence-type": "depositor-full", "addgene_id": "68636", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -225156,7 +238852,10 @@ "plasmid_name": "Puro-iDEST", "sequence-type": "depositor-full", "addgene_id": "75336", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2016.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/27133796" + ], "kit": null, "att_sites": [ "attR1", @@ -225209,7 +238908,10 @@ "plasmid_name": "pENTR-L3-IRES-EGFP-L2", "sequence-type": "depositor-full", "addgene_id": "32591", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL2", @@ -225247,7 +238949,10 @@ "plasmid_name": "pINDUCER20_mStrawberry", "sequence-type": "addgene-full", "addgene_id": "161734", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2229-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32376951" + ], "kit": null, "att_sites": [ "attB1", @@ -225302,7 +239007,10 @@ "plasmid_name": "pPV-TetO-SpCas9-GR-iC-ERiP (CRONUS-Puro)", "sequence-type": "addgene-full", "addgene_id": "100596", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-017-18568-4", + "https://www.ncbi.nlm.nih.gov/pubmed/29321585" + ], "kit": null, "att_sites": [ "attB1", @@ -225342,7 +239050,10 @@ "plasmid_name": "pDONR223_HRAS_p.Q61R", "sequence-type": "addgene-full", "addgene_id": "81311", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -225374,7 +239085,10 @@ "plasmid_name": "pDest-639 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161880", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -225416,7 +239130,10 @@ "plasmid_name": "pDONR223_RBPJ_WT", "sequence-type": "addgene-full", "addgene_id": "82158", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -225445,7 +239162,10 @@ "plasmid_name": "pDEST-EGFP-MACROD2", "sequence-type": "addgene-full", "addgene_id": "172585", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attB1", @@ -225487,7 +239207,10 @@ "plasmid_name": "pENTR-L3-Csy4-FokI-dCas9-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141047", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -225521,7 +239244,10 @@ "plasmid_name": "pHAGE-PTPN11-N58K", "sequence-type": "addgene-full", "addgene_id": "116645", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -225575,7 +239301,10 @@ "plasmid_name": "C413-E38: attB4-T7p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162929", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -225608,7 +239337,10 @@ "plasmid_name": "pDONR207-Citrine-PTS1", "sequence-type": "depositor-full", "addgene_id": "44588", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "att_sites": [ "attL1", @@ -225636,7 +239368,10 @@ "plasmid_name": "pDL5", "sequence-type": "addgene-full", "addgene_id": "175883", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -225667,7 +239402,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP III (AA 1-84)", "sequence-type": "addgene-full", "addgene_id": "119319", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -225719,7 +239457,10 @@ "plasmid_name": "pJA257", "sequence-type": "depositor-full", "addgene_id": "21510", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "att_sites": [ "attL3", @@ -225753,7 +239494,10 @@ "plasmid_name": "pAS2-1-Esf1", "sequence-type": "addgene-full", "addgene_id": "99987", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attB1", @@ -225800,7 +239544,10 @@ "plasmid_name": "pENTR D-TOPO-C3_29", "sequence-type": "depositor-full", "addgene_id": "60272", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -225831,7 +239578,10 @@ "plasmid_name": "pHAGE-PIK3CA-E365V", "sequence-type": "addgene-full", "addgene_id": "116471", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -225885,7 +239635,6 @@ "plasmid_name": "pAG416GAL-1x-HIV-2_PR", "sequence-type": "addgene-full", "addgene_id": "201935", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -225934,7 +239683,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 E", "sequence-type": "addgene-full", "addgene_id": "141273", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -225958,7 +239710,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) FAM149A", "sequence-type": "addgene-full", "addgene_id": "107510", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB1", @@ -226020,7 +239775,10 @@ "plasmid_name": "pAG414GAL-ccdB-DsRed", "sequence-type": "addgene-full", "addgene_id": "14359", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -226081,7 +239839,10 @@ "plasmid_name": "pCS2+Paxillin-mKate", "sequence-type": "addgene-full", "addgene_id": "105974", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.22689", + "https://www.ncbi.nlm.nih.gov/pubmed/28372636" + ], "kit": null, "att_sites": [ "attB1", @@ -226123,7 +239884,10 @@ "plasmid_name": "R713-M50-303: CMV51p> Halotag-HRasHVR", "sequence-type": "addgene-full", "addgene_id": "159685", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "att_sites": [ "attB1", @@ -226181,7 +239945,10 @@ "plasmid_name": "PB-CT3G-CERP2-MG", "sequence-type": "addgene-full", "addgene_id": "175503", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -226227,7 +239994,10 @@ "plasmid_name": "R701-X57-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) Q61L", "sequence-type": "addgene-full", "addgene_id": "159565", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -226274,7 +240044,10 @@ "plasmid_name": "pCR8 LCOR", "sequence-type": "addgene-full", "addgene_id": "114441", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "att_sites": [ "attL1", @@ -226303,7 +240076,10 @@ "plasmid_name": "pDONR221_SLC25A51", "sequence-type": "addgene-full", "addgene_id": "132019", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -226334,7 +240110,10 @@ "plasmid_name": "pHAGE-SMAD4", "sequence-type": "addgene-full", "addgene_id": "116791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -226388,7 +240167,6 @@ "plasmid_name": "pEF 1-PHD-4", "sequence-type": "depositor-full", "addgene_id": "20088", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -226419,7 +240197,10 @@ "plasmid_name": "pHAGE-KCNQ5__ALK", "sequence-type": "addgene-full", "addgene_id": "116825", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -226470,7 +240251,9 @@ "plasmid_name": "pMpGWB413", "sequence-type": "depositor-full", "addgene_id": "68678", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -226519,7 +240302,10 @@ "plasmid_name": "pDONR221_SLC38A8", "sequence-type": "addgene-full", "addgene_id": "132082", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -226550,7 +240336,6 @@ "plasmid_name": "pLEX307-CTSL-blast", "sequence-type": "addgene-full", "addgene_id": "158467", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -226609,7 +240394,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R4-bpFOG-B5::B1-NLSLacZ-B2", "sequence-type": "addgene-full", "addgene_id": "186414", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attB1", @@ -226659,7 +240447,10 @@ "plasmid_name": "pYPQ265E2", "sequence-type": "addgene-full", "addgene_id": "164719", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -226695,7 +240486,10 @@ "plasmid_name": "MAC_C_ARP2", "sequence-type": "addgene-full", "addgene_id": "111658", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -226740,7 +240534,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L1L4", "sequence-type": "depositor-full", "addgene_id": "113736", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -226774,7 +240571,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CSNK1G3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214460", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -226840,7 +240636,10 @@ "plasmid_name": "pCAG/ATP9B-HA", "sequence-type": "addgene-full", "addgene_id": "209214", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -226885,7 +240684,6 @@ "plasmid_name": "pLX_TRC311", "sequence-type": "addgene-full", "addgene_id": "113668", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -226948,7 +240746,10 @@ "plasmid_name": "HS-aPKC-CAAX-mKate2", "sequence-type": "depositor-full", "addgene_id": "105950", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25600237" + ], "kit": null, "att_sites": [ "attB1", @@ -226994,7 +240795,6 @@ "plasmid_name": "pENTR-L4R1-tetO2", "sequence-type": "addgene-full", "addgene_id": "139525", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -227027,7 +240827,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj13-M135R-EGFP", "sequence-type": "addgene-full", "addgene_id": "164944", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB2" @@ -227042,7 +240845,10 @@ "plasmid_name": "pDONR221-XPR1_STOP", "sequence-type": "addgene-full", "addgene_id": "161472", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -227073,7 +240879,9 @@ "plasmid_name": "pDRF'- AmTryoshka1;3-LS-L255I", "sequence-type": "addgene-full", "addgene_id": "100964", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "att_sites": [ "attB1", @@ -227117,7 +240925,10 @@ "plasmid_name": "pAAV_MLP-BC1403-luc2", "sequence-type": "addgene-full", "addgene_id": "214669", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -227163,7 +240974,10 @@ "plasmid_name": "pT2-cryR;cldn5bCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90136", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -227211,7 +241025,10 @@ "plasmid_name": "pDONR221-SLC35B3_STOP", "sequence-type": "depositor-full", "addgene_id": "161253", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -227242,7 +241059,10 @@ "plasmid_name": "GFP-SMARCA4", "sequence-type": "addgene-full", "addgene_id": "65391", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -227294,7 +241114,10 @@ "plasmid_name": "hu-TLR4 299 SNP flag pLenti 4/to/v5 pDEST", "sequence-type": "addgene-full", "addgene_id": "42650", - "references": [], + "references": [ + "https://doi.org/10.1002/hep.22697", + "https://www.ncbi.nlm.nih.gov/pubmed/19085953" + ], "kit": null, "att_sites": [ "attB1", @@ -227351,7 +241174,6 @@ "plasmid_name": "His8:MBP-tev-Lys-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83387", - "references": [], "kit": null, "file": "data/addgene_plasmids/83387.addgene-full.gb" }, @@ -227360,7 +241182,10 @@ "plasmid_name": "pRATIO1267", "sequence-type": "addgene-full", "addgene_id": "141301", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -227411,7 +241236,10 @@ "plasmid_name": "pHAGE-PIK3CA-I391M", "sequence-type": "addgene-full", "addgene_id": "116503", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -227461,7 +241289,10 @@ "plasmid_name": "pAM3110", "sequence-type": "depositor-full", "addgene_id": "40247", - "references": [], + "references": [ + "https://doi.org/10.1099/mic.0.28030-0", + "https://www.ncbi.nlm.nih.gov/pubmed/16079339" + ], "kit": null, "att_sites": [ "attP1", @@ -227494,7 +241325,10 @@ "plasmid_name": "pCFJ889", "sequence-type": "depositor-full", "addgene_id": "84826", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.072", + "https://www.ncbi.nlm.nih.gov/pubmed/27374334" + ], "kit": null, "att_sites": [ "attB1", @@ -227535,7 +241369,10 @@ "plasmid_name": "MAC_N_GCM1", "sequence-type": "addgene-full", "addgene_id": "167759", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -227580,7 +241417,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-S32-KD", "sequence-type": "addgene-full", "addgene_id": "140298", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -227632,7 +241472,10 @@ "plasmid_name": "MAC_C_FLT1", "sequence-type": "addgene-full", "addgene_id": "187784", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -227677,7 +241520,6 @@ "plasmid_name": "R777-E122 Hs.MAP2K1-nostop", "sequence-type": "depositor-full", "addgene_id": "70406", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -227705,7 +241547,10 @@ "plasmid_name": "pCFJ2245 - [1-2] ENTR - Fluor - ce-tagBFP2 (1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159843", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -227736,7 +241581,10 @@ "plasmid_name": "pMuLE ENTR CMV tdTomato R4-R3", "sequence-type": "depositor-full", "addgene_id": "62151", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -227773,7 +241621,10 @@ "plasmid_name": "pDONR223_SRC_WT", "sequence-type": "addgene-full", "addgene_id": "82165", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -227802,7 +241653,10 @@ "plasmid_name": "pFUW-VenusFlag-hCD44", "sequence-type": "addgene-full", "addgene_id": "211824", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2023.105382", + "https://www.ncbi.nlm.nih.gov/pubmed/37866628" + ], "kit": null, "att_sites": [ "attB1", @@ -227869,7 +241723,10 @@ "plasmid_name": "pAAVss-U6-sgHTT51-7sk-Cas9", "sequence-type": "addgene-full", "addgene_id": "190901", - "references": [], + "references": [ + "https://doi.org/10.1016/j.omtm.2023.03.013", + "https://www.ncbi.nlm.nih.gov/pubmed/37090478" + ], "kit": null, "att_sites": [ "attB1", @@ -227904,7 +241761,10 @@ "plasmid_name": "Flag-HA-OTUD5", "sequence-type": "addgene-full", "addgene_id": "22610", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -227953,7 +241813,10 @@ "plasmid_name": "pHAGE-PIK3R1-L372_R373delLR", "sequence-type": "addgene-full", "addgene_id": "116598", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -228004,7 +241867,10 @@ "plasmid_name": "pDONR221_SLC9A1", "sequence-type": "addgene-full", "addgene_id": "132210", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -228036,7 +241902,10 @@ "plasmid_name": "pBullet-vac-n", "sequence-type": "depositor-full", "addgene_id": "53075", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -228073,7 +241942,10 @@ "plasmid_name": "pENTR D-TOPO-C3_25", "sequence-type": "addgene-full", "addgene_id": "60268", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -228104,7 +241976,10 @@ "plasmid_name": "Zed_vector_tol2_-2.1prox1a_1:EGFP_XCA:DsRed2", "sequence-type": "addgene-full", "addgene_id": "218207", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.202525", + "https://www.ncbi.nlm.nih.gov/pubmed/38722096" + ], "kit": null, "att_sites": [ "attB1", @@ -228156,7 +242031,10 @@ "plasmid_name": "pCM5.33", "sequence-type": "depositor-full", "addgene_id": "19396", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -228187,7 +242065,10 @@ "plasmid_name": "pSCR-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209366", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -228232,7 +242113,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MAFG", "sequence-type": "addgene-full", "addgene_id": "207817", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -228298,7 +242182,10 @@ "plasmid_name": "piggyBac_rtTA (4th_Gen)_SNCA-Avi_IRES_NGN2-2A-PURO_Synapsin-BirA (pEHA1628)", "sequence-type": "addgene-full", "addgene_id": "209086", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/35688132" + ], "kit": null, "att_sites": [ "attB1", @@ -228360,7 +242247,10 @@ "plasmid_name": "pDONR223-TNNI3K", "sequence-type": "addgene-full", "addgene_id": "23469", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -228392,7 +242282,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3A G120", "sequence-type": "addgene-full", "addgene_id": "123091", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -228438,7 +242331,10 @@ "plasmid_name": "pHAGE-SIRPB1-G290E", "sequence-type": "addgene-full", "addgene_id": "116678", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -228493,7 +242389,10 @@ "plasmid_name": "pENTR.CMV", "sequence-type": "depositor-full", "addgene_id": "32688", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "att_sites": [ "attL1", @@ -228525,7 +242424,10 @@ "plasmid_name": "pDONR221-ZNF251", "sequence-type": "depositor-full", "addgene_id": "101451", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -228556,7 +242458,10 @@ "plasmid_name": "pShuttle.CC9", "sequence-type": "addgene-full", "addgene_id": "192931", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "att_sites": [ "attL1", @@ -228599,7 +242504,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV E", "sequence-type": "addgene-full", "addgene_id": "145361", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -228643,7 +242551,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TLK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170588", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -228709,7 +242616,6 @@ "plasmid_name": "Hs.KRAS4b Y40F", "sequence-type": "depositor-full", "addgene_id": "83161", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -228735,7 +242641,10 @@ "plasmid_name": "pDONR223_TBK1_WT", "sequence-type": "addgene-full", "addgene_id": "82285", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -228764,7 +242673,10 @@ "plasmid_name": "DR5rev::erRFP", "sequence-type": "addgene-full", "addgene_id": "61011", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.109.072553", + "https://www.ncbi.nlm.nih.gov/pubmed/20363771" + ], "kit": null, "att_sites": [ "attB1", @@ -228801,7 +242713,10 @@ "plasmid_name": "C234-E25: attB2r-SNAP-attB3", "sequence-type": "addgene-full", "addgene_id": "162914", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -228829,7 +242744,10 @@ "plasmid_name": "pCMB-ACTLr", "sequence-type": "depositor-full", "addgene_id": "61194", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -228875,7 +242793,10 @@ "plasmid_name": "R989-X31-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) Q61L", "sequence-type": "addgene-full", "addgene_id": "159558", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -228916,7 +242837,6 @@ "plasmid_name": "pTwist-ENTR-ENST00000429621.1", "sequence-type": "addgene-full", "addgene_id": "192751", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -228946,7 +242866,10 @@ "plasmid_name": "HA-GFP1-10-pDEST-C", "sequence-type": "addgene-full", "addgene_id": "118369", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attR1", @@ -228994,7 +242917,10 @@ "plasmid_name": "SF3B3-1", "sequence-type": "addgene-full", "addgene_id": "156004", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -229038,7 +242964,10 @@ "plasmid_name": "pHAGE-FGFR3__TACC3", "sequence-type": "addgene-full", "addgene_id": "116818", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -229089,7 +243018,6 @@ "plasmid_name": "R777-E164 Hs.PIK3CA-nostop", "sequence-type": "depositor-full", "addgene_id": "70448", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -229117,7 +243045,10 @@ "plasmid_name": "pDONR221_SLC22A3", "sequence-type": "addgene-full", "addgene_id": "132024", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms23031203", + "https://www.ncbi.nlm.nih.gov/pubmed/35163125" + ], "kit": null, "att_sites": [ "attL1", @@ -229148,7 +243079,10 @@ "plasmid_name": "pHAGE-ESR1", "sequence-type": "addgene-full", "addgene_id": "116737", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -229204,7 +243138,10 @@ "plasmid_name": "pAD-CMV-STAT5A-DNL-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83253", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "att_sites": [ "attB1", @@ -229246,7 +243183,10 @@ "plasmid_name": "MAC_C_EZRI", "sequence-type": "addgene-full", "addgene_id": "111665", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -229291,7 +243231,10 @@ "plasmid_name": "D. vulgaris Cas8c/pHMGWA", "sequence-type": "addgene-full", "addgene_id": "81183", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2016.07.027", + "https://www.ncbi.nlm.nih.gov/pubmed/27588603" + ], "kit": null, "file": "data/addgene_plasmids/81183.addgene-full.gb" }, @@ -229300,7 +243243,10 @@ "plasmid_name": "pDONR223_B2M_p.A6V", "sequence-type": "addgene-full", "addgene_id": "81263", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -229332,7 +243278,6 @@ "plasmid_name": "IDG_CACNA2D4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161646", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -229391,7 +243336,9 @@ "plasmid_name": "pMpGWB107", "sequence-type": "depositor-full", "addgene_id": "68561", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -229442,7 +243389,6 @@ "plasmid_name": "pDEST-PB-R4R3", "sequence-type": "addgene-full", "addgene_id": "139518", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -229484,7 +243430,10 @@ "plasmid_name": "pMx/ATP8B4-HA", "sequence-type": "addgene-full", "addgene_id": "209229", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209229.addgene-full.gb" }, @@ -229493,7 +243442,10 @@ "plasmid_name": "pcDNA3_DRD1-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194358", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -229550,7 +243502,9 @@ "plasmid_name": "p3E-nlsGFP no-pA", "sequence-type": "depositor-full", "addgene_id": "80815", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -229586,7 +243540,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep97", "sequence-type": "addgene-full", "addgene_id": "136849", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -229631,7 +243588,10 @@ "plasmid_name": "pDEST-APIC-Cas9", "sequence-type": "addgene-full", "addgene_id": "121657", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301736", + "https://www.ncbi.nlm.nih.gov/pubmed/30504366" + ], "kit": null, "att_sites": [ "attR1", @@ -229669,7 +243629,10 @@ "plasmid_name": "pDONR223_KEAP1_p.W497L", "sequence-type": "addgene-full", "addgene_id": "82793", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL2" @@ -229696,7 +243659,10 @@ "plasmid_name": "pDONR223_EGFR_p.H1129Y", "sequence-type": "addgene-full", "addgene_id": "82827", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -229726,7 +243692,10 @@ "plasmid_name": "pENTR-D-kcnj10a", "sequence-type": "addgene-full", "addgene_id": "173137", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -229757,7 +243726,10 @@ "plasmid_name": "MAP2K3_pLX307", "sequence-type": "addgene-full", "addgene_id": "98355", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -229817,7 +243789,10 @@ "plasmid_name": "pLenti_EF1a_Flag_TP53_WT", "sequence-type": "addgene-full", "addgene_id": "183112", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "att_sites": [ "attB1", @@ -229876,7 +243851,6 @@ "plasmid_name": "pDEST-Spe4-RfA-mEos4b-stop", "sequence-type": "addgene-full", "addgene_id": "186390", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -229921,7 +243895,10 @@ "plasmid_name": "pEXP1/Joseph2-Multitagged Plasmid", "sequence-type": "addgene-full", "addgene_id": "226724", - "references": [], + "references": [ + "https://doi.org/10.1080/07366205.2024.2343609", + "https://www.ncbi.nlm.nih.gov/pubmed/39185782" + ], "kit": null, "att_sites": [ "attB1", @@ -229960,7 +243937,10 @@ "plasmid_name": "TFORF3019", "sequence-type": "addgene-full", "addgene_id": "144495", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -230020,7 +244000,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf9b", "sequence-type": "addgene-full", "addgene_id": "158378", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -230065,7 +244048,10 @@ "plasmid_name": "pDONR223_HTR4_WT", "sequence-type": "addgene-full", "addgene_id": "81915", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -230097,7 +244083,10 @@ "plasmid_name": "5'-3xFLAG Kdm1a-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212054", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -230137,7 +244126,10 @@ "plasmid_name": "pDONR221-SLC38A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161284", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -230168,7 +244160,9 @@ "plasmid_name": "pMpGWB322", "sequence-type": "depositor-full", "addgene_id": "68650", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -230214,7 +244208,10 @@ "plasmid_name": "pDONR223_GEN1_p.L235R", "sequence-type": "addgene-full", "addgene_id": "81541", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -230246,7 +244243,10 @@ "plasmid_name": "pDONR221-SLC1A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161164", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -230278,7 +244278,6 @@ "plasmid_name": "R777-E300 Hs.RPS6KB2-nostop", "sequence-type": "depositor-full", "addgene_id": "70584", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -230307,7 +244306,10 @@ "plasmid_name": "pDO23A", "sequence-type": "depositor-full", "addgene_id": "27367", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "att_sites": [ "attP2", @@ -230339,7 +244341,10 @@ "plasmid_name": "pAG413GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14237", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -230398,7 +244403,10 @@ "plasmid_name": "actc1b-mKate2-rab5c", "sequence-type": "addgene-full", "addgene_id": "109651", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -230440,7 +244448,10 @@ "plasmid_name": "TFORF3299", "sequence-type": "addgene-full", "addgene_id": "144775", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -230499,7 +244510,10 @@ "plasmid_name": "pEN_TT NPIPB11-FLAG", "sequence-type": "addgene-full", "addgene_id": "192308", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -230531,7 +244545,10 @@ "plasmid_name": "pDONR221_SLC25A24", "sequence-type": "addgene-full", "addgene_id": "131980", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -230562,7 +244579,10 @@ "plasmid_name": "pDONR221-SLC6A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161350", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -230593,7 +244613,9 @@ "plasmid_name": "pME iCre-I (JDW 1203)", "sequence-type": "addgene-full", "addgene_id": "224520", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -230628,7 +244650,6 @@ "plasmid_name": "pJH123", "sequence-type": "depositor-full", "addgene_id": "68379", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -230670,7 +244691,10 @@ "plasmid_name": "pMMK ENTR 4", "sequence-type": "addgene-full", "addgene_id": "206263", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL2", @@ -230691,7 +244715,10 @@ "plasmid_name": "pENTR-R4R3-2xmEGFP-C", "sequence-type": "depositor-full", "addgene_id": "113750", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -230726,7 +244753,10 @@ "plasmid_name": "pDONR223_WNT2_WT", "sequence-type": "addgene-full", "addgene_id": "81775", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -230738,7 +244768,10 @@ "plasmid_name": "TFORF3065", "sequence-type": "addgene-full", "addgene_id": "144541", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -230798,7 +244831,9 @@ "plasmid_name": "pDONR221-RAB10", "sequence-type": "addgene-full", "addgene_id": "166202", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -230829,7 +244864,10 @@ "plasmid_name": "pHAGE-CDKN2A-H123Q", "sequence-type": "addgene-full", "addgene_id": "116221", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116221.addgene-full.gb" }, @@ -230838,7 +244876,10 @@ "plasmid_name": "TFORF3439", "sequence-type": "addgene-full", "addgene_id": "144915", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -230898,7 +244939,10 @@ "plasmid_name": "pDONR223-ZNF22", "sequence-type": "addgene-full", "addgene_id": "88102", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -230927,7 +244971,10 @@ "plasmid_name": "SP-dCas9-VPR", "sequence-type": "addgene-full", "addgene_id": "63798", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3312", + "https://www.ncbi.nlm.nih.gov/pubmed/25730490" + ], "kit": null, "att_sites": [ "attB1", @@ -230981,7 +245028,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP12_nostop", "sequence-type": "addgene-full", "addgene_id": "168527", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -231010,7 +245060,10 @@ "plasmid_name": "p5E--3mnx1", "sequence-type": "addgene-full", "addgene_id": "74632", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -231044,7 +245097,10 @@ "plasmid_name": "KO801: pMVP (L5-L4) Hygro-P2A", "sequence-type": "addgene-full", "addgene_id": "121718", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -231079,7 +245135,10 @@ "plasmid_name": "pIRIGF-IKZF3", "sequence-type": "addgene-full", "addgene_id": "69046", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -231114,7 +245173,10 @@ "plasmid_name": "pDONR223_FAM200A_p.S481N", "sequence-type": "addgene-full", "addgene_id": "81495", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -231146,7 +245208,10 @@ "plasmid_name": "pDONR223_RBM45_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82968", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -231175,7 +245240,10 @@ "plasmid_name": "KZ601: pMVP (L3-L2) P2A-Zeo + polyA", "sequence-type": "addgene-full", "addgene_id": "121783", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -231210,7 +245278,10 @@ "plasmid_name": "KL101: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS-KRAB", "sequence-type": "addgene-full", "addgene_id": "121837", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -231245,7 +245316,9 @@ "plasmid_name": "pPB-cT3G-cERP2-PRDM1", "sequence-type": "addgene-full", "addgene_id": "222924", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "att_sites": [ "attB1", @@ -231291,7 +245364,9 @@ "plasmid_name": "pDONR221-HNRNPA1L2", "sequence-type": "addgene-full", "addgene_id": "166179", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -231322,7 +245397,6 @@ "plasmid_name": "Mouse-Dysferlin-Transcript-Variant1", "sequence-type": "depositor-full", "addgene_id": "60214", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -231354,7 +245428,10 @@ "plasmid_name": "sox10:mCherry", "sequence-type": "depositor-full", "addgene_id": "98695", - "references": [], + "references": [ + "https://doi.org/10.1038/onc.2016.269", + "https://www.ncbi.nlm.nih.gov/pubmed/27477693" + ], "kit": null, "att_sites": [ "attB1", @@ -231398,7 +245475,10 @@ "plasmid_name": "RCH1:GA2ox2-GFP", "sequence-type": "addgene-full", "addgene_id": "108567", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "att_sites": [ "attB1", @@ -231441,7 +245521,10 @@ "plasmid_name": "pAG304GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14279", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -231500,7 +245583,9 @@ "plasmid_name": "pPB-cT3G-cERP2-RARG", "sequence-type": "addgene-full", "addgene_id": "222570", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -231546,7 +245631,10 @@ "plasmid_name": "pDONR221-kcnk5b", "sequence-type": "addgene-full", "addgene_id": "208989", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -231577,7 +245665,10 @@ "plasmid_name": "pDONR221_SLC16A14", "sequence-type": "addgene-full", "addgene_id": "131926", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -231608,7 +245699,6 @@ "plasmid_name": "plix403-V5-N-mECFP", "sequence-type": "addgene-full", "addgene_id": "223954", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -231673,7 +245763,6 @@ "plasmid_name": "pLenti6.3/NS5-YFP", "sequence-type": "addgene-full", "addgene_id": "120847", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -231737,7 +245826,10 @@ "plasmid_name": "TFORF3391", "sequence-type": "addgene-full", "addgene_id": "144867", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -231797,7 +245889,10 @@ "plasmid_name": "pDONR223-ZNF451", "sequence-type": "addgene-full", "addgene_id": "88070", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL2" @@ -231824,7 +245919,10 @@ "plasmid_name": "pcDNA3_SP-DRD2-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194365", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -231881,7 +245979,10 @@ "plasmid_name": "pUC-AdEvolve-DEST", "sequence-type": "addgene-full", "addgene_id": "131692", - "references": [], + "references": [ + "https://doi.org/10.1021/jacs.8b10937", + "https://www.ncbi.nlm.nih.gov/pubmed/30427676" + ], "kit": null, "att_sites": [ "attR1", @@ -231935,7 +246036,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep152", "sequence-type": "addgene-full", "addgene_id": "136874", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -231981,7 +246085,10 @@ "plasmid_name": "pLDPuro-MmnSR100N", "sequence-type": "addgene-full", "addgene_id": "35171", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2011.08.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21884984" + ], "kit": null, "att_sites": [ "attB1", @@ -232040,7 +246147,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir16-1 wt", "sequence-type": "depositor-full", "addgene_id": "46683", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -232090,7 +246200,10 @@ "plasmid_name": "pDONR223-ZNF3_isoform1", "sequence-type": "addgene-full", "addgene_id": "87978", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -232119,7 +246232,10 @@ "plasmid_name": "pDONR223_DNMT3A_p.A910V", "sequence-type": "addgene-full", "addgene_id": "81607", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -232152,7 +246268,10 @@ "plasmid_name": "RNF138_pLX307", "sequence-type": "addgene-full", "addgene_id": "98368", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -232212,7 +246331,10 @@ "plasmid_name": "pDONR221-SLC26A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161222", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -232243,7 +246365,10 @@ "plasmid_name": "pKM839", "sequence-type": "depositor-full", "addgene_id": "8838", - "references": [], + "references": [ + "https://doi.org/10.1016/S0014-5793%2803%2900070-X", + "https://www.ncbi.nlm.nih.gov/pubmed/12606030" + ], "kit": null, "att_sites": [ "attR1", @@ -232284,7 +246409,10 @@ "plasmid_name": "pEZY19", "sequence-type": "depositor-full", "addgene_id": "18668", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "att_sites": [ "attR1", @@ -232327,7 +246455,10 @@ "plasmid_name": "TFORF2957", "sequence-type": "addgene-full", "addgene_id": "144433", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -232386,7 +246517,10 @@ "plasmid_name": "actc1b-mKate2-EHD2b", "sequence-type": "addgene-full", "addgene_id": "109517", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -232428,7 +246562,10 @@ "plasmid_name": "CPL2g/pDONR221", "sequence-type": "addgene-full", "addgene_id": "172093", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.00722", + "https://www.ncbi.nlm.nih.gov/pubmed/31484679" + ], "kit": null, "att_sites": [ "attL1", @@ -232460,7 +246597,10 @@ "plasmid_name": "5'-3xFLAG Msl1+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212069", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -232500,7 +246640,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.E545K", "sequence-type": "addgene-full", "addgene_id": "82881", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -232529,7 +246672,6 @@ "plasmid_name": "R777-E176 Hs.PIK3R3-nostop", "sequence-type": "depositor-full", "addgene_id": "70460", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -232557,7 +246699,10 @@ "plasmid_name": "pDONR223_SERPINB5_p.D141A", "sequence-type": "addgene-full", "addgene_id": "82735", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -232589,7 +246734,6 @@ "plasmid_name": "pUC-L1L4", "sequence-type": "addgene-full", "addgene_id": "114018", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -232628,7 +246772,10 @@ "plasmid_name": "pMuLE ENTR U6 n.s shRNA R4-R3", "sequence-type": "depositor-full", "addgene_id": "62137", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -232662,7 +246809,10 @@ "plasmid_name": "TFORF3272", "sequence-type": "addgene-full", "addgene_id": "144748", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -232722,7 +246872,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF7B C-trunc_nostop", "sequence-type": "addgene-full", "addgene_id": "153956", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attB1", @@ -232751,7 +246904,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-mCBP80 zeo", "sequence-type": "addgene-full", "addgene_id": "192335", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -232823,7 +246979,10 @@ "plasmid_name": "pENTR223-PARK7E163K", "sequence-type": "addgene-full", "addgene_id": "115181", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attL1", @@ -232852,7 +247011,10 @@ "plasmid_name": "pENTR-R4r-EGFP-R3r", "sequence-type": "depositor-full", "addgene_id": "32413", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attR3", @@ -232887,7 +247049,10 @@ "plasmid_name": "pDONR223_PIK3R1_WT", "sequence-type": "addgene-full", "addgene_id": "81748", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -232919,7 +247084,10 @@ "plasmid_name": "pFRT_TO_FlagHA_ELAVL1", "sequence-type": "addgene-full", "addgene_id": "106104", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "att_sites": [ "attB1", @@ -232964,7 +247132,10 @@ "plasmid_name": "pEN-R2-mCsfGFP-L3", "sequence-type": "addgene-full", "addgene_id": "178602", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.00051", + "https://www.ncbi.nlm.nih.gov/pubmed/30872425" + ], "kit": null, "att_sites": [ "attL3", @@ -232998,7 +247169,6 @@ "plasmid_name": "WT-long-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "192101", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -233048,7 +247218,10 @@ "plasmid_name": "pDONR221_MFSD14A", "sequence-type": "addgene-full", "addgene_id": "131869", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131869.addgene-full.gb" }, @@ -233057,7 +247230,10 @@ "plasmid_name": "pCZGY1026 COX8aN::miniSOG in pENTR[1-2]", "sequence-type": "depositor-full", "addgene_id": "66752", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1204096109", + "https://www.ncbi.nlm.nih.gov/pubmed/22532663" + ], "kit": null, "att_sites": [ "attL1", @@ -233091,7 +247267,6 @@ "plasmid_name": "Hs.KRAS4b G12F", "sequence-type": "depositor-full", "addgene_id": "83149", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -233117,7 +247292,10 @@ "plasmid_name": "pAG304GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14160", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -233175,7 +247353,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK10_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158171", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -233241,7 +247418,10 @@ "plasmid_name": "pCONR221", "sequence-type": "addgene-full", "addgene_id": "216146", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attP1", @@ -233276,7 +247456,10 @@ "plasmid_name": "TFORF3452", "sequence-type": "addgene-full", "addgene_id": "144928", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -233337,7 +247520,9 @@ "plasmid_name": "nTALECD for_PKT3 exon1_1397NC", "sequence-type": "addgene-full", "addgene_id": "193378", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "att_sites": [ "attB1", @@ -233384,7 +247569,10 @@ "plasmid_name": "pQLinkHD-SYNZIP2", "sequence-type": "depositor-full", "addgene_id": "80658", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "att_sites": [ "attB1", @@ -233420,7 +247608,10 @@ "plasmid_name": "pDONR223_POLR2I_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82955", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -233449,7 +247640,10 @@ "plasmid_name": "IF701: pMVP (L5-L4) APEX2", "sequence-type": "addgene-full", "addgene_id": "121725", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -233481,7 +247675,10 @@ "plasmid_name": "pLV-SspB-HaloTag-TIAM1-DHPH", "sequence-type": "addgene-full", "addgene_id": "176127", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.84364", + "https://www.ncbi.nlm.nih.gov/pubmed/37449837" + ], "kit": null, "att_sites": [ "attB1", @@ -233543,7 +247740,10 @@ "plasmid_name": "ATX3-77Q", "sequence-type": "addgene-full", "addgene_id": "184249", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "att_sites": [ "attB2" @@ -233576,7 +247776,10 @@ "plasmid_name": "pAG414GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14407", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -233638,7 +247841,10 @@ "plasmid_name": "pDONR223_KRT26_p.S2C", "sequence-type": "addgene-full", "addgene_id": "81433", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -233670,7 +247876,10 @@ "plasmid_name": "pAC1809_pmax-RBM38-FRB", "sequence-type": "addgene-full", "addgene_id": "118642", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attB1", @@ -233702,7 +247911,10 @@ "plasmid_name": "TFORF3131", "sequence-type": "addgene-full", "addgene_id": "144607", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -233762,7 +247974,10 @@ "plasmid_name": "pGCS-C5(GST)", "sequence-type": "addgene-full", "addgene_id": "85728", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -233812,7 +248027,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 S_nostop", "sequence-type": "addgene-full", "addgene_id": "168581", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -233841,7 +248059,10 @@ "plasmid_name": "p3E-rab7a", "sequence-type": "addgene-full", "addgene_id": "109723", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -233872,7 +248093,9 @@ "plasmid_name": "pAG426GAL-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166144", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attB1", @@ -233927,7 +248150,10 @@ "plasmid_name": "PA-RL-BAD", "sequence-type": "depositor-full", "addgene_id": "78859", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "att_sites": [ "attB1", @@ -233979,7 +248205,10 @@ "plasmid_name": "pHAGE-EGFR-P699S", "sequence-type": "addgene-full", "addgene_id": "116287", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -234033,7 +248262,10 @@ "plasmid_name": "pHAGE-BRAF-K499N", "sequence-type": "addgene-full", "addgene_id": "116167", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -234088,7 +248320,10 @@ "plasmid_name": "pMuLE Lenti Dest Luc2", "sequence-type": "depositor-full", "addgene_id": "62179", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR1", @@ -234149,7 +248384,10 @@ "plasmid_name": "pGWB555", "sequence-type": "depositor-full", "addgene_id": "74885", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -234199,7 +248437,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-DCLK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189891", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -234265,7 +248502,6 @@ "plasmid_name": "pMK33-GW-TurboID-V5", "sequence-type": "addgene-full", "addgene_id": "196281", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -234302,7 +248538,10 @@ "plasmid_name": "pHAGE-RNF8-S157A", "sequence-type": "addgene-full", "addgene_id": "221704", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-023-01192-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37468549" + ], "kit": null, "att_sites": [ "attB1", @@ -234352,7 +248591,10 @@ "plasmid_name": "p7128 pHAGE-P-CMVt-N-HA-GAW-HLA-A", "sequence-type": "addgene-full", "addgene_id": "100154", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -234404,7 +248646,10 @@ "plasmid_name": "pDONR223_TPTE_WT", "sequence-type": "addgene-full", "addgene_id": "81867", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -234436,7 +248681,10 @@ "plasmid_name": "pCK002 pME mCerulean", "sequence-type": "addgene-full", "addgene_id": "195956", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL1", @@ -234472,7 +248720,9 @@ "plasmid_name": "pFcpB-DEST", "sequence-type": "addgene-full", "addgene_id": "90098", - "references": [], + "references": [ + "https://doi.org/10.7287/peerj.preprints.2907v1" + ], "kit": null, "att_sites": [ "attR1", @@ -234514,7 +248764,10 @@ "plasmid_name": "p221z-AtMIR390a", "sequence-type": "addgene-full", "addgene_id": "118388", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "att_sites": [ "attL1", @@ -234549,7 +248802,10 @@ "plasmid_name": "pRP(Exp)-CMV> :dTomato:IRES:Puro", "sequence-type": "addgene-full", "addgene_id": "110832", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.201701465RR", + "https://www.ncbi.nlm.nih.gov/pubmed/29570397" + ], "kit": null, "att_sites": [ "attB1", @@ -234597,7 +248853,10 @@ "plasmid_name": "pDONR223-TYK2", "sequence-type": "addgene-full", "addgene_id": "23908", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -234629,7 +248888,6 @@ "plasmid_name": "PB-TET-BH-lox66FRT", "sequence-type": "addgene-full", "addgene_id": "139562", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -234688,7 +248946,10 @@ "plasmid_name": "pMx/ATP8B1(E234Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209253", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209253.addgene-full.gb" }, @@ -234697,7 +248958,10 @@ "plasmid_name": "HJP-194-IVS-Syn21-CreA-gp41-1N-WPREUw", "sequence-type": "addgene-full", "addgene_id": "162475", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162475.addgene-full.gb" }, @@ -234706,7 +248970,6 @@ "plasmid_name": "pHAGE-CMV-Flag-PKMYT1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135277", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -234759,7 +249022,10 @@ "plasmid_name": "pDONR223_EIF1AX_p.G9R", "sequence-type": "addgene-full", "addgene_id": "81282", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -234791,7 +249057,10 @@ "plasmid_name": "pTORKm43GWF", "sequence-type": "addgene-full", "addgene_id": "112899", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01516-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31575765" + ], "kit": null, "att_sites": [ "attR3", @@ -234839,7 +249108,10 @@ "plasmid_name": "MAC-DPP4", "sequence-type": "addgene-full", "addgene_id": "172416", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -234884,7 +249156,6 @@ "plasmid_name": "EV-A71 2A protease; aliases: Enterovirus EV71 2A protease, 6xHis-SUMO-TEV tag, self cleaving", "sequence-type": "addgene-full", "addgene_id": "204810", - "references": [], "kit": null, "file": "data/addgene_plasmids/204810.addgene-full.gb" }, @@ -234893,7 +249164,10 @@ "plasmid_name": "p3E-2a-6MTnlstdTomato", "sequence-type": "depositor-full", "addgene_id": "67699", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "att_sites": [ "attL3", @@ -234928,7 +249202,10 @@ "plasmid_name": "W118-1_hSTK16-Flag", "sequence-type": "addgene-full", "addgene_id": "180403", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "att_sites": [ "attB1", @@ -234991,7 +249268,10 @@ "plasmid_name": "MEN2B-SHC", "sequence-type": "addgene-full", "addgene_id": "139619", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -235035,7 +249315,10 @@ "plasmid_name": "MAC_N_CDK7", "sequence-type": "addgene-full", "addgene_id": "111684", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -235080,7 +249363,10 @@ "plasmid_name": "pDL74", "sequence-type": "addgene-full", "addgene_id": "175910", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -235104,7 +249390,10 @@ "plasmid_name": "pDONR221 Nop2", "sequence-type": "depositor-full", "addgene_id": "63766", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -235135,7 +249424,10 @@ "plasmid_name": "MAC_C_EphA7", "sequence-type": "addgene-full", "addgene_id": "187765", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -235180,7 +249472,10 @@ "plasmid_name": "pDONR223_TP53_p.C176F", "sequence-type": "addgene-full", "addgene_id": "81356", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -235213,7 +249508,10 @@ "plasmid_name": "pLentiPGK DEST H2B-iRFP670", "sequence-type": "addgene-full", "addgene_id": "90237", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "att_sites": [ "attB1", @@ -235253,7 +249551,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK38L_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170612", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -235319,7 +249616,10 @@ "plasmid_name": "pENTR223-BFLF1", "sequence-type": "addgene-full", "addgene_id": "195819", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -235348,7 +249648,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 Q770A E774K", "sequence-type": "addgene-full", "addgene_id": "175770", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -235401,7 +249704,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD4-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113480", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -235445,7 +249751,10 @@ "plasmid_name": "GFP-ATAD2", "sequence-type": "addgene-full", "addgene_id": "65370", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -235498,7 +249807,10 @@ "plasmid_name": "pHAGE-PIK3R1-Q455_K459delQFQEK", "sequence-type": "addgene-full", "addgene_id": "116602", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -235549,7 +249861,10 @@ "plasmid_name": "pMET7-GAG-GW", "sequence-type": "addgene-full", "addgene_id": "194634", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms11416", + "https://www.ncbi.nlm.nih.gov/pubmed/27122307" + ], "kit": null, "att_sites": [ "attR1", @@ -235586,7 +249901,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-WWC3", "sequence-type": "addgene-full", "addgene_id": "172996", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -235631,7 +249949,10 @@ "plasmid_name": "pDONR223-PIK3R4", "sequence-type": "addgene-full", "addgene_id": "23488", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -235663,7 +249984,10 @@ "plasmid_name": "pHAGE-TGFBR2-G43C", "sequence-type": "addgene-full", "addgene_id": "116699", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -235714,7 +250038,10 @@ "plasmid_name": "pDONR221_SLC35A5", "sequence-type": "addgene-full", "addgene_id": "132111", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -235745,7 +250072,10 @@ "plasmid_name": "pDONR223 LC3A G120A", "sequence-type": "addgene-full", "addgene_id": "123070", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -235776,7 +250106,10 @@ "plasmid_name": "pDONR221-SLC6A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161408", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -235806,7 +250139,10 @@ "plasmid_name": "Active Wnt1-V5", "sequence-type": "addgene-full", "addgene_id": "43807", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -235854,7 +250190,10 @@ "plasmid_name": "pDONR223_CRY1_WT", "sequence-type": "addgene-full", "addgene_id": "82264", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -235883,7 +250222,10 @@ "plasmid_name": "pcDNA3_ERBB4-NTEV-tcs-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "214613", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -235940,7 +250282,10 @@ "plasmid_name": "pDONR223_STAT3_p.A662C_N664C", "sequence-type": "addgene-full", "addgene_id": "82184", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82184.addgene-full.gb" }, @@ -235949,7 +250294,9 @@ "plasmid_name": "pMpGWB415", "sequence-type": "depositor-full", "addgene_id": "68680", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68680.depositor-full.gb" }, @@ -235958,7 +250305,10 @@ "plasmid_name": "Phage-PGK-Flag-HA-FKBP-T(G177D)", "sequence-type": "addgene-full", "addgene_id": "181735", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xcrm.2020.100188", + "https://www.ncbi.nlm.nih.gov/pubmed/33521702" + ], "kit": null, "att_sites": [ "attB1", @@ -236009,7 +250359,10 @@ "plasmid_name": "tetO-HAND1", "sequence-type": "addgene-full", "addgene_id": "170689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -236072,7 +250425,6 @@ "plasmid_name": "CTNNB1 - G752A in pENTR", "sequence-type": "addgene-full", "addgene_id": "216623", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -236102,7 +250454,10 @@ "plasmid_name": "pHAGE-PIK3CG-G426E", "sequence-type": "addgene-full", "addgene_id": "116579", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -236157,7 +250512,6 @@ "plasmid_name": "R777-E270 Hs.RASSF9-nostop", "sequence-type": "depositor-full", "addgene_id": "70554", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -236185,7 +250539,10 @@ "plasmid_name": "pHAGE-PDGFRB", "sequence-type": "addgene-full", "addgene_id": "116770", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -236236,7 +250593,10 @@ "plasmid_name": "pDONR223-ZNF449", "sequence-type": "addgene-full", "addgene_id": "88453", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -236265,7 +250625,6 @@ "plasmid_name": "R777-E319 Hs.SOS2", "sequence-type": "depositor-full", "addgene_id": "70603", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -236293,7 +250652,10 @@ "plasmid_name": "pDONR223-EGFR", "sequence-type": "addgene-full", "addgene_id": "23935", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -236326,7 +250688,10 @@ "plasmid_name": "pHAGE-PIK3CA-G1007R", "sequence-type": "addgene-full", "addgene_id": "116490", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -236376,7 +250741,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_K100E", "sequence-type": "depositor-full", "addgene_id": "65093", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65093.depositor-full.gb" }, @@ -236385,7 +250753,6 @@ "plasmid_name": "R777-E080 Hs.EXOC7-nostop", "sequence-type": "depositor-full", "addgene_id": "70364", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -236413,7 +250780,10 @@ "plasmid_name": "pNL(CMV)Rep78-III/CMV/WPRE\u0394U3", "sequence-type": "addgene-full", "addgene_id": "190726", - "references": [], + "references": [ + "https://doi.org/10.1089/hgtb.2018.052", + "https://www.ncbi.nlm.nih.gov/pubmed/29860898" + ], "kit": null, "att_sites": [ "attB1", @@ -236458,7 +250828,10 @@ "plasmid_name": "Tol2-lyzC-mcherry-2a-CDK2-D145N", "sequence-type": "addgene-full", "addgene_id": "121132", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1905221116", + "https://www.ncbi.nlm.nih.gov/pubmed/31451657" + ], "kit": null, "att_sites": [ "attB1", @@ -236504,7 +250877,10 @@ "plasmid_name": "pSGE_648_S2-1-Trl_dCP", "sequence-type": "depositor-full", "addgene_id": "71166", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -236537,7 +250913,10 @@ "plasmid_name": "pDESThaw", "sequence-type": "depositor-full", "addgene_id": "32317", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attR1", @@ -236582,7 +250961,10 @@ "plasmid_name": "pGWB513", "sequence-type": "depositor-full", "addgene_id": "74855", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74855.depositor-full.gb" }, @@ -236591,7 +250973,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab8A", "sequence-type": "addgene-full", "addgene_id": "166428", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -236635,7 +251016,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL1 G116", "sequence-type": "addgene-full", "addgene_id": "123102", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -236679,7 +251063,10 @@ "plasmid_name": "pDONR221_SLC35C1", "sequence-type": "addgene-full", "addgene_id": "132063", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -236710,7 +251097,10 @@ "plasmid_name": "GDNF-SHC", "sequence-type": "addgene-full", "addgene_id": "139624", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -236754,7 +251144,10 @@ "plasmid_name": "pZA8", "sequence-type": "addgene-full", "addgene_id": "158486", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -236784,7 +251177,6 @@ "plasmid_name": "pDONR221-si:ch73-281n10.2", "sequence-type": "addgene-full", "addgene_id": "192716", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -236815,7 +251207,10 @@ "plasmid_name": "pEX-CMV-SP-YFP-STM2(15-746)", "sequence-type": "addgene-full", "addgene_id": "18862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "att_sites": [ "attB1", @@ -236858,7 +251253,10 @@ "plasmid_name": "ATX3 13Q- I77K Q78K W87K", "sequence-type": "addgene-full", "addgene_id": "185908", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "att_sites": [ "attB2" @@ -236891,7 +251289,6 @@ "plasmid_name": "p35S::ARA6/RabF1-YFPc", "sequence-type": "addgene-full", "addgene_id": "102408", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -236924,7 +251321,10 @@ "plasmid_name": "PB-TAC-ERN", "sequence-type": "depositor-full", "addgene_id": "80475", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "att_sites": [ "attR1", @@ -236988,7 +251388,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Bh", "sequence-type": "addgene-full", "addgene_id": "136378", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL2", @@ -237018,7 +251421,10 @@ "plasmid_name": "pLV-PLXNB2-dVTDL", "sequence-type": "addgene-full", "addgene_id": "86239", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "att_sites": [ "attB1", @@ -237078,7 +251484,10 @@ "plasmid_name": "pLipoP1-NLS-3xmCitrine", "sequence-type": "addgene-full", "addgene_id": "192522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.112676", + "https://www.ncbi.nlm.nih.gov/pubmed/37342910" + ], "kit": null, "att_sites": [ "attB1", @@ -237123,7 +251532,10 @@ "plasmid_name": "pDONR221_SV2A", "sequence-type": "addgene-full", "addgene_id": "132257", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -237154,7 +251566,10 @@ "plasmid_name": "FAM207A_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176950", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -237206,7 +251621,10 @@ "plasmid_name": "pFRT-TODestGFP_RBPMS2", "sequence-type": "depositor-full", "addgene_id": "65747", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.045005.114", + "https://www.ncbi.nlm.nih.gov/pubmed/24860013" + ], "kit": null, "att_sites": [ "attB1", @@ -237253,7 +251671,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-40", "sequence-type": "depositor-full", "addgene_id": "46653", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -237303,7 +251724,10 @@ "plasmid_name": "pDEST/LIfeAct-mCherry-N1", "sequence-type": "addgene-full", "addgene_id": "40908", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.111.257964", + "https://www.ncbi.nlm.nih.gov/pubmed/22328533" + ], "kit": null, "att_sites": [ "attB1", @@ -237345,7 +251769,10 @@ "plasmid_name": "MAC_N_NKX25", "sequence-type": "addgene-full", "addgene_id": "167785", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -237390,7 +251817,10 @@ "plasmid_name": "pDONR223_FURIN_WT", "sequence-type": "addgene-full", "addgene_id": "82122", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -237420,7 +251850,6 @@ "plasmid_name": "g13s pD42", "sequence-type": "addgene-full", "addgene_id": "117446", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -237459,7 +251888,10 @@ "plasmid_name": "pLgw EcoDam-V5-ELK1", "sequence-type": "addgene-full", "addgene_id": "98604", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attB1", @@ -237512,7 +251944,9 @@ "plasmid_name": "pJPF0117", "sequence-type": "addgene-full", "addgene_id": "130267", - "references": [], + "references": [ + "https://doi.org/10.1101/747030" + ], "kit": null, "att_sites": [ "attB1", @@ -237577,7 +252011,10 @@ "plasmid_name": "pENTR223-BKRF3", "sequence-type": "addgene-full", "addgene_id": "195790", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -237606,7 +252043,10 @@ "plasmid_name": "C514-E11: attB5r-RU5u-His6-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162953", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -237636,7 +252076,10 @@ "plasmid_name": "pENTR223-BRLF1(Rta)", "sequence-type": "addgene-full", "addgene_id": "195824", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -237666,7 +252109,10 @@ "plasmid_name": "pDEST40-CES2A-\u0394C-S227A", "sequence-type": "addgene-full", "addgene_id": "200556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2023.04.011", + "https://www.ncbi.nlm.nih.gov/pubmed/37141889" + ], "kit": null, "att_sites": [ "attB1", @@ -237718,7 +252164,6 @@ "plasmid_name": "pLIX403-EBFP2-ccdB-Puro", "sequence-type": "addgene-full", "addgene_id": "158552", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -237779,7 +252224,9 @@ "plasmid_name": "pMpGWB208", "sequence-type": "depositor-full", "addgene_id": "68599", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -237830,7 +252277,10 @@ "plasmid_name": "pME-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "166567", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "att_sites": [ "attL1", @@ -237863,7 +252313,10 @@ "plasmid_name": "pBH-UAS-secA5-YFP", "sequence-type": "depositor-full", "addgene_id": "32359", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.10-161018", + "https://www.ncbi.nlm.nih.gov/pubmed/20601526" + ], "kit": null, "file": "data/addgene_plasmids/32359.depositor-full.gb" }, @@ -237872,7 +252325,10 @@ "plasmid_name": "pDONR223_SMURF2_WT", "sequence-type": "addgene-full", "addgene_id": "82259", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82259.addgene-full.gb" }, @@ -237881,7 +252337,10 @@ "plasmid_name": "pRK5mycGW-Eps8L2", "sequence-type": "addgene-full", "addgene_id": "196542", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attB1", @@ -237934,7 +252393,10 @@ "plasmid_name": "pDONR_P2R-P3_R2-miniTurbo-mVenus-STOP-L3", "sequence-type": "addgene-full", "addgene_id": "127356", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127356.addgene-full.gb" }, @@ -237943,7 +252405,10 @@ "plasmid_name": "pDONR221-MFSD2B_STOP", "sequence-type": "addgene-full", "addgene_id": "161435", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -237974,7 +252439,10 @@ "plasmid_name": "pENTR/pSM2(CMV/TO) (w55-1)", "sequence-type": "depositor-full", "addgene_id": "17388", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -238004,7 +252472,6 @@ "plasmid_name": "pAG426-GAL-UBQLN2", "sequence-type": "addgene-full", "addgene_id": "181708", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -238059,7 +252526,10 @@ "plasmid_name": "pCFJ1358 - Intron GG1 - smu-1", "sequence-type": "addgene-full", "addgene_id": "159804", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -238097,7 +252567,10 @@ "plasmid_name": "pAG304GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14303", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -238156,7 +252629,10 @@ "plasmid_name": "Tol2-LyzC-Rac-WT(guide resistant)-2a-mcherry-U6ac-Rac guides", "sequence-type": "addgene-full", "addgene_id": "168242", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "att_sites": [ "attB1", @@ -238200,7 +252676,10 @@ "plasmid_name": "pHAGE-PIK3CA-T1025N", "sequence-type": "addgene-full", "addgene_id": "116544", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -238254,7 +252733,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS-Gln93", "sequence-type": "addgene-full", "addgene_id": "158629", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attL1", @@ -238283,7 +252765,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TBCK_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170587", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -238349,7 +252830,9 @@ "plasmid_name": "pMpGWB216", "sequence-type": "depositor-full", "addgene_id": "68607", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attB2", @@ -238398,7 +252881,10 @@ "plasmid_name": "pSRK2706", "sequence-type": "addgene-full", "addgene_id": "78571", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ab.2016.04.006", + "https://www.ncbi.nlm.nih.gov/pubmed/27105777" + ], "kit": null, "att_sites": [ "attB1", @@ -238437,7 +252923,10 @@ "plasmid_name": "pAG306GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14260", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -238493,7 +252982,10 @@ "plasmid_name": "ADARB1", "sequence-type": "addgene-full", "addgene_id": "155396", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -238536,7 +253028,10 @@ "plasmid_name": "pHAGE-SIRPB1-E170K", "sequence-type": "addgene-full", "addgene_id": "116677", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -238591,7 +253086,10 @@ "plasmid_name": "pMuLE ENTR MCS L1-R5", "sequence-type": "depositor-full", "addgene_id": "62084", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -238622,7 +253120,10 @@ "plasmid_name": "pHAGE-PIK3R1-K567E", "sequence-type": "addgene-full", "addgene_id": "116597", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -238673,7 +253174,10 @@ "plasmid_name": "p667-UBC-MAFG-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207818", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -238738,7 +253242,10 @@ "plasmid_name": "pLBD16-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209369", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -238783,7 +253290,10 @@ "plasmid_name": "Zed_vector_tol2_-2.1prox1a_2:EGFP_XCA:DsRed2", "sequence-type": "addgene-full", "addgene_id": "218208", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.202525", + "https://www.ncbi.nlm.nih.gov/pubmed/38722096" + ], "kit": null, "att_sites": [ "attB1", @@ -238835,7 +253345,10 @@ "plasmid_name": "pDONR223_ISX_p.T87A", "sequence-type": "addgene-full", "addgene_id": "81323", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -238867,7 +253380,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-KD", "sequence-type": "addgene-full", "addgene_id": "140297", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -238919,7 +253435,10 @@ "plasmid_name": "MAC_N_ETV7", "sequence-type": "addgene-full", "addgene_id": "167756", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -238964,7 +253483,10 @@ "plasmid_name": "ITGB2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176983", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -239016,7 +253538,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF7a", "sequence-type": "addgene-full", "addgene_id": "169393", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -239059,7 +253580,9 @@ "plasmid_name": "pEpic_Lite", "sequence-type": "depositor-full", "addgene_id": "84373", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attR3", @@ -239114,7 +253637,10 @@ "plasmid_name": "pDONR221_SLC4A5", "sequence-type": "addgene-full", "addgene_id": "132284", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -239145,7 +253671,10 @@ "plasmid_name": "Silene_conica _LysRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202655", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "att_sites": [ "attB1", @@ -239184,7 +253713,10 @@ "plasmid_name": "pInducer20 Cyclin E1", "sequence-type": "addgene-full", "addgene_id": "109348", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.30473", + "https://www.ncbi.nlm.nih.gov/pubmed/29148972" + ], "kit": null, "att_sites": [ "attB1", @@ -239233,7 +253765,10 @@ "plasmid_name": "pENTR-R4R3-mEGFP-C", "sequence-type": "depositor-full", "addgene_id": "113749", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -239271,7 +253806,6 @@ "plasmid_name": "His8:MBP-tev-His-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83388", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -239310,7 +253844,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir129-2-wt", "sequence-type": "depositor-full", "addgene_id": "46730", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -239360,7 +253897,10 @@ "plasmid_name": "pDONR221_SLC9C2", "sequence-type": "addgene-full", "addgene_id": "132164", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -239391,7 +253931,10 @@ "plasmid_name": "Flag-HA-UCHL3", "sequence-type": "addgene-full", "addgene_id": "22564", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -239436,7 +253979,10 @@ "plasmid_name": "pLenti PGK FKBP12(F36V)-OGT (Neo)", "sequence-type": "addgene-full", "addgene_id": "154294", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "att_sites": [ "attB1", @@ -239498,7 +254044,10 @@ "plasmid_name": "pT2-cryR;sheCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90139", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -239546,7 +254095,10 @@ "plasmid_name": "pDONR223_FYN_WT", "sequence-type": "addgene-full", "addgene_id": "82211", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -239575,7 +254127,10 @@ "plasmid_name": "C453-E24: attB4-UbCp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162980", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -239603,7 +254158,10 @@ "plasmid_name": "pAAV_MLP-BC0250-luc2", "sequence-type": "addgene-full", "addgene_id": "214666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -239650,7 +254208,6 @@ "plasmid_name": "pDEST-flox-R4R3", "sequence-type": "addgene-full", "addgene_id": "139517", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -239683,7 +254240,9 @@ "plasmid_name": "pMpGWB321", "sequence-type": "depositor-full", "addgene_id": "68649", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -239729,7 +254288,10 @@ "plasmid_name": "pMx/ATP8B1-HA", "sequence-type": "addgene-full", "addgene_id": "209226", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -239765,7 +254327,10 @@ "plasmid_name": "pRU320", "sequence-type": "addgene-full", "addgene_id": "167682", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -239814,7 +254379,6 @@ "plasmid_name": "p663-UBC-ER-miniTurbo-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214452", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -239880,7 +254444,10 @@ "plasmid_name": "pME tdTomato", "sequence-type": "addgene-full", "addgene_id": "135202", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13967", + "https://www.ncbi.nlm.nih.gov/pubmed/25470057" + ], "kit": null, "att_sites": [ "attL1", @@ -239912,7 +254479,6 @@ "plasmid_name": "IDG_HTR3C_OE_1", "sequence-type": "addgene-full", "addgene_id": "161649", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -239971,7 +254537,6 @@ "plasmid_name": "pPV475", "sequence-type": "depositor-full", "addgene_id": "42928", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -240002,7 +254567,10 @@ "plasmid_name": "pQLinkGD", "sequence-type": "depositor-full", "addgene_id": "13673", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkm067", + "https://www.ncbi.nlm.nih.gov/pubmed/17311810" + ], "kit": null, "att_sites": [ "attR1", @@ -240041,7 +254609,10 @@ "plasmid_name": "LZRS-Rfa", "sequence-type": "addgene-full", "addgene_id": "31601", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-04-0017", + "https://www.ncbi.nlm.nih.gov/pubmed/15342384" + ], "kit": null, "att_sites": [ "attR1", @@ -240085,7 +254656,10 @@ "plasmid_name": "TOB2", "sequence-type": "addgene-full", "addgene_id": "156090", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -240128,7 +254702,6 @@ "plasmid_name": "pLEX307-APN-blast", "sequence-type": "addgene-full", "addgene_id": "158455", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -240187,7 +254760,10 @@ "plasmid_name": "pHAGE-EZH2", "sequence-type": "addgene-full", "addgene_id": "116738", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -240241,7 +254817,10 @@ "plasmid_name": "pShuttle", "sequence-type": "addgene-full", "addgene_id": "192871", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "att_sites": [ "attL1", @@ -240272,7 +254851,10 @@ "plasmid_name": "pSN007", "sequence-type": "addgene-full", "addgene_id": "102440", - "references": [], + "references": [ + "https://doi.org/10.3791/57998", + "https://www.ncbi.nlm.nih.gov/pubmed/30346403" + ], "kit": null, "att_sites": [ "attL1", @@ -240301,7 +254883,10 @@ "plasmid_name": "Flag-GFP11-pDEST-N", "sequence-type": "addgene-full", "addgene_id": "118366", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attR1", @@ -240351,7 +254936,10 @@ "plasmid_name": "pHAGE EF1\u03b1 dCas9-VP64", "sequence-type": "depositor-full", "addgene_id": "50918", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.103341", + "https://www.ncbi.nlm.nih.gov/pubmed/24346702" + ], "kit": null, "att_sites": [ "attB1", @@ -240407,7 +254995,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS5", "sequence-type": "depositor-full", "addgene_id": "20244", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "att_sites": [ "attB1", @@ -240439,7 +255030,10 @@ "plasmid_name": "pLENTI_Hu_ECT2(WT)", "sequence-type": "addgene-full", "addgene_id": "136330", - "references": [], + "references": [ + "https://doi.org/10.1038/nm.4364", + "https://www.ncbi.nlm.nih.gov/pubmed/28692064" + ], "kit": null, "att_sites": [ "attB1", @@ -240501,7 +255095,6 @@ "plasmid_name": "pCM1.109", "sequence-type": "depositor-full", "addgene_id": "19597", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -240532,7 +255125,10 @@ "plasmid_name": "R989-X30-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) G13D", "sequence-type": "addgene-full", "addgene_id": "159557", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -240573,7 +255169,10 @@ "plasmid_name": "pDONR221-SLC25A31_STOP", "sequence-type": "depositor-full", "addgene_id": "161135", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -240604,7 +255203,10 @@ "plasmid_name": "TFORF3523", "sequence-type": "depositor-full", "addgene_id": "144999", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -240664,7 +255266,10 @@ "plasmid_name": "pDONR223-ZNF285", "sequence-type": "addgene-full", "addgene_id": "88760", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88760.addgene-full.gb" }, @@ -240673,7 +255278,10 @@ "plasmid_name": "c-myc-PT3EF1a", "sequence-type": "addgene-full", "addgene_id": "92046", - "references": [], + "references": [ + "https://doi.org/10.1002/hep.29183", + "https://www.ncbi.nlm.nih.gov/pubmed/28370287" + ], "kit": null, "att_sites": [ "attB1", @@ -240715,7 +255323,10 @@ "plasmid_name": "pHAGE-NRAS-K135N", "sequence-type": "addgene-full", "addgene_id": "116443", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -240765,7 +255376,6 @@ "plasmid_name": "R777-E153 Hs.PAK4", "sequence-type": "depositor-full", "addgene_id": "70437", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -240793,7 +255403,10 @@ "plasmid_name": "C413-E34: attB4-mCMVp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162926", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -240826,7 +255439,10 @@ "plasmid_name": "pAG414GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14384", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -240887,7 +255503,10 @@ "plasmid_name": "pMuLE ENTR SV40 iRFP L3-L2", "sequence-type": "depositor-full", "addgene_id": "62160", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -240923,7 +255542,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 481-852)", "sequence-type": "addgene-full", "addgene_id": "119316", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -240975,7 +255597,10 @@ "plasmid_name": "pKH142_EGFP-YIPF3 WT", "sequence-type": "addgene-full", "addgene_id": "214974", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "att_sites": [ "attB1", @@ -241028,7 +255653,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS2A", "sequence-type": "addgene-full", "addgene_id": "145353", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -241063,7 +255691,10 @@ "plasmid_name": "pPB-cT3G-cERP2-ZBTB16", "sequence-type": "addgene-full", "addgene_id": "192903", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192903.addgene-full.gb" }, @@ -241072,7 +255703,10 @@ "plasmid_name": "pENTR-L3-SpCas9-HF1-2A-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141048", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -241102,7 +255736,10 @@ "plasmid_name": "pCW57.1-ZNF746", "sequence-type": "addgene-full", "addgene_id": "207825", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -241156,7 +255793,10 @@ "plasmid_name": "pLCS100", "sequence-type": "addgene-full", "addgene_id": "209354", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -241201,7 +255841,10 @@ "plasmid_name": "pYPQ265E9", "sequence-type": "addgene-full", "addgene_id": "213472", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-024-49473-w", + "https://www.ncbi.nlm.nih.gov/pubmed/38877035" + ], "kit": null, "att_sites": [ "attL1", @@ -241236,7 +255879,10 @@ "plasmid_name": "pDONR221_SLC9A2", "sequence-type": "addgene-full", "addgene_id": "132222", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -241267,7 +255913,10 @@ "plasmid_name": "pCFJ782 - HygroR", "sequence-type": "addgene-full", "addgene_id": "190933", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "att_sites": [ "attL1", @@ -241299,7 +255948,6 @@ "plasmid_name": "V5-deltaUBA-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "195405", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -241350,7 +255998,10 @@ "plasmid_name": "pTORGm43GWR", "sequence-type": "addgene-full", "addgene_id": "112905", - "references": [], + "references": [ + "https://doi.org/10.1186/s12866-019-1642-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31775609" + ], "kit": null, "att_sites": [ "attR3", @@ -241395,7 +256046,10 @@ "plasmid_name": "pDONR223_RAC1_WT", "sequence-type": "addgene-full", "addgene_id": "82157", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -241425,7 +256079,10 @@ "plasmid_name": "pAG426GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14179", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -241488,7 +256145,10 @@ "plasmid_name": "DUX4_KBM pDonor221", "sequence-type": "addgene-full", "addgene_id": "187802", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attL1", @@ -241519,7 +256179,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP1 Delta RC", "sequence-type": "addgene-full", "addgene_id": "164522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.10.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33080218" + ], "kit": null, "att_sites": [ "attL1", @@ -241543,7 +256206,10 @@ "plasmid_name": "pDONR223_CYLC2_p.E133K", "sequence-type": "addgene-full", "addgene_id": "81385", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -241575,7 +256241,6 @@ "plasmid_name": "Hs.KRAS4b A146T", "sequence-type": "depositor-full", "addgene_id": "83150", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -241601,7 +256266,10 @@ "plasmid_name": "pHAGE-PIK3CA-R108C", "sequence-type": "addgene-full", "addgene_id": "116531", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -241655,7 +256323,10 @@ "plasmid_name": "pDONR221_SLC6A11", "sequence-type": "addgene-full", "addgene_id": "132159", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132159.addgene-full.gb" }, @@ -241664,7 +256335,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-N17-neo", "sequence-type": "addgene-full", "addgene_id": "156179", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -241724,7 +256398,10 @@ "plasmid_name": "LIIIalpha R A-B", "sequence-type": "depositor-full", "addgene_id": "54383", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54383.depositor-full.gb" }, @@ -241733,7 +256410,10 @@ "plasmid_name": "pLX307 HRAS", "sequence-type": "addgene-full", "addgene_id": "117748", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -241794,7 +256474,10 @@ "plasmid_name": "pDEST15-Eps8L2_297-370", "sequence-type": "addgene-full", "addgene_id": "196537", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attB1", @@ -241828,7 +256511,10 @@ "plasmid_name": "pLD-puro-2A-rtTA-TcVA", "sequence-type": "addgene-full", "addgene_id": "24592", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.M000002-MCP201", + "https://www.ncbi.nlm.nih.gov/pubmed/20305087" + ], "kit": null, "att_sites": [ "attR1", @@ -241897,7 +256583,10 @@ "plasmid_name": "Flag-HA-STAMBPL1", "sequence-type": "addgene-full", "addgene_id": "22559", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -241942,7 +256631,10 @@ "plasmid_name": "pDONR221-UCP1_STOP", "sequence-type": "addgene-full", "addgene_id": "161440", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -241973,7 +256665,10 @@ "plasmid_name": "pENTR/D-Topo CDS A. thaliana IMPORTIN ALPHA 9", "sequence-type": "addgene-full", "addgene_id": "175817", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12691", + "https://www.ncbi.nlm.nih.gov/pubmed/25284001" + ], "kit": null, "att_sites": [ "attL1", @@ -242004,7 +256699,6 @@ "plasmid_name": "R777-E195 Hs.PRKAB1", "sequence-type": "depositor-full", "addgene_id": "70479", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -242032,7 +256726,6 @@ "plasmid_name": "IDG_TMC7_OE_1", "sequence-type": "addgene-full", "addgene_id": "161674", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -242091,7 +256784,10 @@ "plasmid_name": "pPHAGE_DLD-S456A-C-TAP", "sequence-type": "depositor-full", "addgene_id": "83479", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "att_sites": [ "attB1", @@ -242144,7 +256840,10 @@ "plasmid_name": "pYPQ269C2", "sequence-type": "addgene-full", "addgene_id": "164716", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -242182,7 +256881,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term SRSF7", "sequence-type": "addgene-full", "addgene_id": "187582", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -242226,7 +256928,6 @@ "plasmid_name": "pLEX307-CTSL-G418", "sequence-type": "addgene-full", "addgene_id": "158468", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -242286,7 +256987,10 @@ "plasmid_name": "pENTR221-WNT3A", "sequence-type": "addgene-full", "addgene_id": "79501", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -242317,7 +257021,10 @@ "plasmid_name": "pDONR221_SLC25A28", "sequence-type": "addgene-full", "addgene_id": "132016", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -242348,7 +257055,10 @@ "plasmid_name": "pCPP5537", "sequence-type": "addgene-full", "addgene_id": "128730", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -242379,7 +257089,10 @@ "plasmid_name": "pAG305GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14137", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -242436,7 +257149,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-API5", "sequence-type": "depositor-full", "addgene_id": "38074", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -242482,7 +257198,10 @@ "plasmid_name": "pDEST-Flag-FBW7K404R", "sequence-type": "addgene-full", "addgene_id": "200717", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "att_sites": [ "attB1", @@ -242527,7 +257246,10 @@ "plasmid_name": "pNJB91", "sequence-type": "depositor-full", "addgene_id": "51519", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attL1", @@ -242561,7 +257283,10 @@ "plasmid_name": "pDONR223_CHUK_WT", "sequence-type": "addgene-full", "addgene_id": "82083", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -242593,7 +257318,10 @@ "plasmid_name": "pACT2-Esf1", "sequence-type": "addgene-full", "addgene_id": "99988", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attB1", @@ -242629,7 +257357,9 @@ "plasmid_name": "pMpGWB434", "sequence-type": "depositor-full", "addgene_id": "68699", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -242678,7 +257408,10 @@ "plasmid_name": "TFORF3484", "sequence-type": "addgene-full", "addgene_id": "144960", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -242738,7 +257471,9 @@ "plasmid_name": "pDONR221-PRDX1", "sequence-type": "addgene-full", "addgene_id": "166197", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -242769,7 +257504,10 @@ "plasmid_name": "pHAGE-EGFR-G719C", "sequence-type": "addgene-full", "addgene_id": "116254", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -242823,7 +257561,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP10_stop", "sequence-type": "addgene-full", "addgene_id": "168552", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -242852,7 +257593,10 @@ "plasmid_name": "pJW4.02", "sequence-type": "depositor-full", "addgene_id": "62867", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -242896,7 +257640,10 @@ "plasmid_name": "pENTR223-BALF5", "sequence-type": "addgene-full", "addgene_id": "198577", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -242925,7 +257672,10 @@ "plasmid_name": "pEN_TTmiRc2_3xflag_NRF2", "sequence-type": "addgene-full", "addgene_id": "136527", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attL1", @@ -242954,7 +257704,6 @@ "plasmid_name": "CDH5-AbR-GFP", "sequence-type": "addgene-full", "addgene_id": "122970", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -243016,7 +257765,10 @@ "plasmid_name": "pDONR221-SLC6A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161325", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -243047,7 +257799,10 @@ "plasmid_name": "pDONR223_BRAF_p.V600E", "sequence-type": "addgene-full", "addgene_id": "81700", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -243080,7 +257835,10 @@ "plasmid_name": "pYPQ150", "sequence-type": "depositor-full", "addgene_id": "69301", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL1", @@ -243115,7 +257873,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168906", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -243144,7 +257905,10 @@ "plasmid_name": "pDR FLIP43 GPS1-NR", "sequence-type": "addgene-full", "addgene_id": "101085", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-017-0021-9", + "https://www.ncbi.nlm.nih.gov/pubmed/28970478" + ], "kit": null, "att_sites": [ "attB1", @@ -243192,7 +257956,10 @@ "plasmid_name": "pMMLV-EBFP-P2A-Puro", "sequence-type": "addgene-full", "addgene_id": "160227", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.07.009", + "https://www.ncbi.nlm.nih.gov/pubmed/34352222" + ], "kit": null, "att_sites": [ "attB1", @@ -243229,7 +257996,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF6_nostop", "sequence-type": "addgene-full", "addgene_id": "149323", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -243258,7 +258028,10 @@ "plasmid_name": "pDONR-IAA19_no stop", "sequence-type": "depositor-full", "addgene_id": "83857", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attB1", @@ -243289,7 +258062,10 @@ "plasmid_name": "pCR8_TaNAM-A1", "sequence-type": "addgene-full", "addgene_id": "124574", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "att_sites": [ "attL1", @@ -243318,7 +258094,10 @@ "plasmid_name": "pDONR223_FAM173B_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82986", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -243347,7 +258126,10 @@ "plasmid_name": "KK701: pMAGIC (L3-L2) 3x HA eptitope tag + polyA; hU6::xCas9(3.7) gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121842", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -243384,7 +258166,10 @@ "plasmid_name": "pDONR221-kcnj12b", "sequence-type": "addgene-full", "addgene_id": "173142", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -243415,7 +258200,10 @@ "plasmid_name": "BMPR1A_pLX307", "sequence-type": "addgene-full", "addgene_id": "98320", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -243475,7 +258263,10 @@ "plasmid_name": "pLX317-VRK2", "sequence-type": "addgene-full", "addgene_id": "199641", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "att_sites": [ "attB1", @@ -243535,7 +258326,10 @@ "plasmid_name": "KHBD00188", "sequence-type": "addgene-full", "addgene_id": "34340", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1763", + "https://www.ncbi.nlm.nih.gov/pubmed/22037703" + ], "kit": null, "att_sites": [ "attL1", @@ -243566,7 +258360,6 @@ "plasmid_name": "R777-E219 Hs.RALBP1", "sequence-type": "depositor-full", "addgene_id": "70503", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -243594,7 +258387,10 @@ "plasmid_name": "pRecLV103-GFP-PGBD5", "sequence-type": "depositor-full", "addgene_id": "65409", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.10565", + "https://www.ncbi.nlm.nih.gov/pubmed/26406119" + ], "kit": null, "att_sites": [ "attB2" @@ -243656,7 +258452,10 @@ "plasmid_name": "pEBTet-SNAP-plk4", "sequence-type": "addgene-full", "addgene_id": "136788", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -243704,7 +258503,6 @@ "plasmid_name": "R777-E015 Hs.BRAF", "sequence-type": "depositor-full", "addgene_id": "70299", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -243733,7 +258531,6 @@ "plasmid_name": "pSCM167-Venus-VF-hADAM10(aa1-459)", "sequence-type": "addgene-full", "addgene_id": "189559", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -243789,7 +258586,10 @@ "plasmid_name": "pDONR223_EGFR_p.774_775insHV", "sequence-type": "addgene-full", "addgene_id": "82852", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -243819,7 +258619,10 @@ "plasmid_name": "tetO-Hand2", "sequence-type": "addgene-full", "addgene_id": "46028", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "att_sites": [ "attB1", @@ -243881,7 +258684,10 @@ "plasmid_name": "pDONR221-SLC13A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161111", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -243912,7 +258718,10 @@ "plasmid_name": "pHAGE-FGFR2-N549K", "sequence-type": "addgene-full", "addgene_id": "116380", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -243967,7 +258776,10 @@ "plasmid_name": "actc1b-mKate2-rab33ba", "sequence-type": "addgene-full", "addgene_id": "109624", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -244009,7 +258821,6 @@ "plasmid_name": "pAM-35s-ABI2-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102383", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -244043,7 +258854,10 @@ "plasmid_name": "p221z-erTagRFP", "sequence-type": "depositor-full", "addgene_id": "71266", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL1", @@ -244074,7 +258888,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp15", "sequence-type": "depositor-full", "addgene_id": "168844", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -244103,7 +258920,9 @@ "plasmid_name": "p5E-hs_Cldn5 (JDW 1120)", "sequence-type": "addgene-full", "addgene_id": "224481", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224481.addgene-full.gb" }, @@ -244112,7 +258931,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-E", "sequence-type": "addgene-full", "addgene_id": "154418", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -244142,7 +258964,10 @@ "plasmid_name": "pENTR4_CELF1", "sequence-type": "addgene-full", "addgene_id": "106098", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "att_sites": [ "attL1", @@ -244173,7 +258998,10 @@ "plasmid_name": "pEN_TT 3xFLAG-BCAS2", "sequence-type": "addgene-full", "addgene_id": "192294", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -244202,7 +259030,10 @@ "plasmid_name": "pGWB408", "sequence-type": "depositor-full", "addgene_id": "74802", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -244252,7 +259083,10 @@ "plasmid_name": "pAG306-GPD-VPH2 chr I", "sequence-type": "depositor-full", "addgene_id": "41897", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11654", + "https://www.ncbi.nlm.nih.gov/pubmed/23172144" + ], "kit": null, "att_sites": [ "attB1", @@ -244300,7 +259134,6 @@ "plasmid_name": "His SUMO TEV W22R SPOP 1-374", "sequence-type": "addgene-full", "addgene_id": "197016", - "references": [], "kit": null, "file": "data/addgene_plasmids/197016.addgene-full.gb" }, @@ -244309,7 +259142,10 @@ "plasmid_name": "pHAGE-EGFR-L747_S752delLREATS", "sequence-type": "addgene-full", "addgene_id": "116269", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -244363,7 +259199,10 @@ "plasmid_name": "pDONR223_TPK1_p.L185I", "sequence-type": "addgene-full", "addgene_id": "82920", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -244392,7 +259231,10 @@ "plasmid_name": "IA001: pMVP (L3-L2) 3x HA epitope tag+ polyA", "sequence-type": "addgene-full", "addgene_id": "121750", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121750.addgene-full.gb" }, @@ -244401,7 +259243,9 @@ "plasmid_name": "pME-Trpa1b-2A-mCherry", "sequence-type": "addgene-full", "addgene_id": "106291", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28928472" + ], "kit": null, "att_sites": [ "attL1", @@ -244436,7 +259280,10 @@ "plasmid_name": "pJOG387", "sequence-type": "addgene-full", "addgene_id": "105338", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -244466,7 +259313,6 @@ "plasmid_name": "R777-E049 Hs.E2F3", "sequence-type": "depositor-full", "addgene_id": "70333", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -244494,7 +259340,10 @@ "plasmid_name": "pENTR-Creb5(T59/T61D)(HA)", "sequence-type": "addgene-full", "addgene_id": "195026", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "att_sites": [ "attL1", @@ -244526,7 +259375,10 @@ "plasmid_name": "A1-LCD+7R+10D", "sequence-type": "addgene-full", "addgene_id": "178677", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -244561,7 +259413,10 @@ "plasmid_name": "pDONR221-SLC26A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161318", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -244592,7 +259447,10 @@ "plasmid_name": "A1-LCD Aro--", "sequence-type": "addgene-full", "addgene_id": "169716", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "att_sites": [ "attB1", @@ -244627,7 +259485,10 @@ "plasmid_name": "pDONR223_OMA1_WT", "sequence-type": "addgene-full", "addgene_id": "81889", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -244659,7 +259520,10 @@ "plasmid_name": "pHAGE-BRAF-P367S", "sequence-type": "addgene-full", "addgene_id": "116189", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -244714,7 +259578,10 @@ "plasmid_name": "pLenti X2 Blast DEST (w46-2)", "sequence-type": "depositor-full", "addgene_id": "17391", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -244773,7 +259640,10 @@ "plasmid_name": "TFORF3033", "sequence-type": "addgene-full", "addgene_id": "144509", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -244833,7 +259703,10 @@ "plasmid_name": "pCMB-TGN61r", "sequence-type": "depositor-full", "addgene_id": "61175", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -244879,7 +259752,10 @@ "plasmid_name": "pLEX307-SARS-CoV-3CL-C145A", "sequence-type": "addgene-full", "addgene_id": "160281", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -244939,7 +259815,10 @@ "plasmid_name": "pINDUCER21-puro_TAOK1", "sequence-type": "addgene-full", "addgene_id": "209777", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -244995,7 +259874,6 @@ "plasmid_name": "pDONR223 MitoFlux (pSu9-HaloTag7-mGFP-STOP)", "sequence-type": "addgene-full", "addgene_id": "215001", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -245030,7 +259908,10 @@ "plasmid_name": "pR26 CAG/BFP Dest", "sequence-type": "depositor-full", "addgene_id": "74282", - "references": [], + "references": [ + "https://doi.org/10.1186/s12896-016-0234-4", + "https://www.ncbi.nlm.nih.gov/pubmed/26772810" + ], "kit": null, "att_sites": [ "attR1", @@ -245099,7 +259980,10 @@ "plasmid_name": "pHAGE-ALK-R401Q", "sequence-type": "addgene-full", "addgene_id": "116112", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -245149,7 +260033,10 @@ "plasmid_name": "pMOS018: ratiometric pHluorin (mitchondrial)", "sequence-type": "addgene-full", "addgene_id": "163053", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -245212,7 +260099,9 @@ "plasmid_name": "pMpGWB126", "sequence-type": "depositor-full", "addgene_id": "68580", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -245259,7 +260148,10 @@ "plasmid_name": "pDEST17-ALDH1A3", "sequence-type": "addgene-full", "addgene_id": "189750", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "att_sites": [ "attB1", @@ -245293,7 +260185,10 @@ "plasmid_name": "pDONR223_XPO1_WT", "sequence-type": "addgene-full", "addgene_id": "81812", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -245325,7 +260220,10 @@ "plasmid_name": "pDONR221-SLC12A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161063", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -245356,7 +260254,10 @@ "plasmid_name": "pDONR223_SMAD4_p.R361P", "sequence-type": "addgene-full", "addgene_id": "81446", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -245388,7 +260289,10 @@ "plasmid_name": "pLX-EF1a_NKX2-5", "sequence-type": "addgene-full", "addgene_id": "221491", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -245448,7 +260352,6 @@ "plasmid_name": "CMYA5tnT/pENTR3C", "sequence-type": "addgene-full", "addgene_id": "98129", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -245472,7 +260375,10 @@ "plasmid_name": "pCW-eGFP-FHA-SHLD2-m1", "sequence-type": "addgene-full", "addgene_id": "114122", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "att_sites": [ "attB1", @@ -245530,7 +260436,10 @@ "plasmid_name": "TFORF3196", "sequence-type": "addgene-full", "addgene_id": "144672", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -245590,7 +260499,10 @@ "plasmid_name": "pAC1803_pmax-RBM38-dCasRx", "sequence-type": "addgene-full", "addgene_id": "118637", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attB1", @@ -245623,7 +260535,10 @@ "plasmid_name": "pDONR221_SLC16A2", "sequence-type": "addgene-full", "addgene_id": "131887", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -245654,7 +260569,10 @@ "plasmid_name": "LUC7L", "sequence-type": "addgene-full", "addgene_id": "155713", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -245697,7 +260615,6 @@ "plasmid_name": "Tgfb-Induced-Enhancer:Beta-globin-minimal-promoter-EGFP:pA pDestTol2pA2", "sequence-type": "addgene-full", "addgene_id": "220508", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -245739,7 +260656,10 @@ "plasmid_name": "plenti-UBC-gate-3xHA-pGK-PUR", "sequence-type": "addgene-full", "addgene_id": "107393", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attR1", @@ -245804,7 +260724,10 @@ "plasmid_name": "pCWX-UBI-hTert-PGK-BSD", "sequence-type": "addgene-full", "addgene_id": "114316", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-125-7_25", + "https://www.ncbi.nlm.nih.gov/pubmed/23097121" + ], "kit": null, "att_sites": [ "attB1", @@ -245861,7 +260784,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.L177M", "sequence-type": "addgene-full", "addgene_id": "81672", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -245893,7 +260819,10 @@ "plasmid_name": "5'-BirA-FLAG GFP minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212087", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -245937,7 +260866,10 @@ "plasmid_name": "pAG305GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14354", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -245993,7 +260925,10 @@ "plasmid_name": "TFORF2970", "sequence-type": "addgene-full", "addgene_id": "144446", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -246053,7 +260988,10 @@ "plasmid_name": "pENTR-Site6", "sequence-type": "depositor-full", "addgene_id": "24515", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0009846", + "https://www.ncbi.nlm.nih.gov/pubmed/20352097" + ], "kit": null, "att_sites": [ "attL1", @@ -246101,7 +261039,10 @@ "plasmid_name": "p3E-rab25a", "sequence-type": "addgene-full", "addgene_id": "109682", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -246132,7 +261073,10 @@ "plasmid_name": "pcDNA3.2/NS5-YFP-NLS-mut", "sequence-type": "addgene-full", "addgene_id": "120832", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -246187,7 +261131,10 @@ "plasmid_name": "pDONR221_MFSD6", "sequence-type": "addgene-full", "addgene_id": "131953", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -246218,7 +261165,10 @@ "plasmid_name": "pQLinkHD_ECFP", "sequence-type": "addgene-full", "addgene_id": "118857", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "att_sites": [ "attB1", @@ -246257,7 +261207,10 @@ "plasmid_name": "TFORF3336", "sequence-type": "addgene-full", "addgene_id": "144812", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -246317,7 +261270,6 @@ "plasmid_name": "pBABEpuro-CRAF", "sequence-type": "addgene-full", "addgene_id": "51124", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -246349,7 +261301,10 @@ "plasmid_name": "pDONR223_RBM10_p.R171W", "sequence-type": "addgene-full", "addgene_id": "81592", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -246383,7 +261338,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep97", "sequence-type": "addgene-full", "addgene_id": "136801", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -246428,7 +261386,6 @@ "plasmid_name": "Hs.NRAS Q61K", "sequence-type": "depositor-full", "addgene_id": "83180", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -246453,7 +261410,10 @@ "plasmid_name": "pDONR223_KIF2B_p.W60L", "sequence-type": "addgene-full", "addgene_id": "81509", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -246485,7 +261445,10 @@ "plasmid_name": "pDONR223_MAX_p.R60del", "sequence-type": "addgene-full", "addgene_id": "82740", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -246518,7 +261481,10 @@ "plasmid_name": "JDW 829 (pTol2-kdrl:V5-mTagBFP2-hsKRAS4A-G12D-ac/Y)", "sequence-type": "addgene-full", "addgene_id": "156415", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -246563,7 +261529,10 @@ "plasmid_name": "pENTR-L5-Kir2.1-mCherry-L2", "sequence-type": "depositor-full", "addgene_id": "32669", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL2", @@ -246594,7 +261563,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-SV40 NLS zeo", "sequence-type": "addgene-full", "addgene_id": "192340", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -246667,7 +261639,10 @@ "plasmid_name": "pDON223 Spike D1118H", "sequence-type": "addgene-full", "addgene_id": "180068", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -246696,7 +261671,10 @@ "plasmid_name": "actc1b-mKate2-rab2a", "sequence-type": "addgene-full", "addgene_id": "109619", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -246738,7 +261716,10 @@ "plasmid_name": "pAAVS1-P-CAG-DEST", "sequence-type": "addgene-full", "addgene_id": "80490", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "att_sites": [ "attR1", @@ -246797,7 +261778,10 @@ "plasmid_name": "TFORF3413", "sequence-type": "addgene-full", "addgene_id": "144889", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -246857,7 +261841,10 @@ "plasmid_name": "pDEST12.2 DYRK2 WT", "sequence-type": "addgene-full", "addgene_id": "20005", - "references": [], + "references": [ + "https://doi.org/10.1038/nature04631", + "https://www.ncbi.nlm.nih.gov/pubmed/16511445" + ], "kit": null, "att_sites": [ "attB1", @@ -246909,7 +261896,10 @@ "plasmid_name": "pDONR221 CARD8 PAM S297A", "sequence-type": "addgene-full", "addgene_id": "169976", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -246940,7 +261930,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF9B", "sequence-type": "addgene-full", "addgene_id": "154425", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -246970,7 +261963,10 @@ "plasmid_name": "pMXs-ms-Klf1", "sequence-type": "depositor-full", "addgene_id": "50785", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "file": "data/addgene_plasmids/50785.depositor-full.gb" }, @@ -246979,7 +261975,10 @@ "plasmid_name": "C121-E01: rLuc", "sequence-type": "addgene-full", "addgene_id": "162888", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -247012,7 +262011,10 @@ "plasmid_name": "pDONR223_STK3_WT", "sequence-type": "addgene-full", "addgene_id": "82319", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -247042,7 +262044,10 @@ "plasmid_name": "pDL216", "sequence-type": "addgene-full", "addgene_id": "175922", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -247066,7 +262071,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aac.3", "sequence-type": "addgene-full", "addgene_id": "136377", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL2", @@ -247097,7 +262105,10 @@ "plasmid_name": "pZA11", "sequence-type": "addgene-full", "addgene_id": "158489", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -247126,7 +262137,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab6b", "sequence-type": "addgene-full", "addgene_id": "166427", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -247170,7 +262180,6 @@ "plasmid_name": "p35S:TN3-YFPn", "sequence-type": "addgene-full", "addgene_id": "102407", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -247204,7 +262213,10 @@ "plasmid_name": "645 pCS2-etv2", "sequence-type": "depositor-full", "addgene_id": "49005", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "att_sites": [ "attB1", @@ -247243,7 +262255,6 @@ "plasmid_name": "pDONR221-B3GALT5", "sequence-type": "addgene-full", "addgene_id": "192719", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -247274,7 +262285,10 @@ "plasmid_name": "pENTR eGFPCreERT2 L1-R5", "sequence-type": "depositor-full", "addgene_id": "43961", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "att_sites": [ "attL1", @@ -247310,7 +262324,6 @@ "plasmid_name": "pAG416GAL-DENV_NS3-GS-NS2B", "sequence-type": "addgene-full", "addgene_id": "201940", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -247363,7 +262376,6 @@ "plasmid_name": "IDG_TMEM63C_OE_1", "sequence-type": "addgene-full", "addgene_id": "161695", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -247422,7 +262434,6 @@ "plasmid_name": "p667-UBC-CDK12-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135245", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -247488,7 +262499,10 @@ "plasmid_name": "pAG425GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14298", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -247550,7 +262564,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-UD", "sequence-type": "addgene-full", "addgene_id": "140304", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -247602,7 +262619,10 @@ "plasmid_name": "pDRM55 tet-AR(1-707)", "sequence-type": "addgene-full", "addgene_id": "183503", - "references": [], + "references": [ + "https://doi.org/10.1038/s41591-020-01168-7", + "https://www.ncbi.nlm.nih.gov/pubmed/33462444" + ], "kit": null, "att_sites": [ "attB1", @@ -247657,7 +262677,10 @@ "plasmid_name": "pSC29", "sequence-type": "addgene-full", "addgene_id": "104803", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "att_sites": [ "attB1", @@ -247701,7 +262724,10 @@ "plasmid_name": "pMx/ATP11A(E186Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209261", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -247736,7 +262762,6 @@ "plasmid_name": "pENTR-DsRedT4", "sequence-type": "addgene-full", "addgene_id": "139550", - "references": [], "kit": null, "file": "data/addgene_plasmids/139550.addgene-full.gb" }, @@ -247745,7 +262770,10 @@ "plasmid_name": "pDONR_P4-P1R:PER36modp", "sequence-type": "addgene-full", "addgene_id": "128431", - "references": [], + "references": [ + "https://doi.org/10.1007/s11103-019-00909-8", + "https://www.ncbi.nlm.nih.gov/pubmed/31422517" + ], "kit": null, "att_sites": [ "attL4", @@ -247776,7 +262804,9 @@ "plasmid_name": "pDONR221_zCas9", "sequence-type": "addgene-full", "addgene_id": "213913", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.5029" + ], "kit": null, "att_sites": [ "attL1", @@ -247812,7 +262842,10 @@ "plasmid_name": "pME minprom KalTa4", "sequence-type": "addgene-full", "addgene_id": "195964", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL1", @@ -247843,7 +262876,6 @@ "plasmid_name": "BRAF - S467A in pENTR", "sequence-type": "addgene-full", "addgene_id": "216611", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -247873,7 +262905,6 @@ "plasmid_name": "pAG426-GAL-Kar2-Beta-Amyloid", "sequence-type": "addgene-full", "addgene_id": "181707", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -247927,7 +262958,10 @@ "plasmid_name": "pLD-puro-Cc-PRDX5K83R-VA", "sequence-type": "addgene-full", "addgene_id": "98690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "att_sites": [ "attB1", @@ -247989,7 +263023,10 @@ "plasmid_name": "pLX307 hcRed1", "sequence-type": "addgene-full", "addgene_id": "117732", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -248050,7 +263087,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0383-luc2", "sequence-type": "addgene-full", "addgene_id": "214621", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -248094,7 +263134,10 @@ "plasmid_name": "pDONR223_HIF1AN_WT", "sequence-type": "addgene-full", "addgene_id": "82256", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -248123,7 +263166,10 @@ "plasmid_name": "pENTR_L1-miniTurbo-NES-YFP-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127359", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL1", @@ -248160,7 +263206,10 @@ "plasmid_name": "pMXs-mGLIS1", "sequence-type": "depositor-full", "addgene_id": "33273", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10106", + "https://www.ncbi.nlm.nih.gov/pubmed/21654807" + ], "kit": null, "att_sites": [ "attB1", @@ -248188,7 +263237,10 @@ "plasmid_name": "pME-mKate2-P2A-TurboID-NS", "sequence-type": "addgene-full", "addgene_id": "166568", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "att_sites": [ "attL1", @@ -248223,7 +263275,10 @@ "plasmid_name": "pDONR221_SLC35A4", "sequence-type": "addgene-full", "addgene_id": "132123", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132123.addgene-full.gb" }, @@ -248232,7 +263287,9 @@ "plasmid_name": "pcDNA5-3xFLAG-TAF5-FL_WobbleMut", "sequence-type": "addgene-full", "addgene_id": "209055", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attB1", @@ -248275,7 +263332,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp9", "sequence-type": "depositor-full", "addgene_id": "168822", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -248304,7 +263364,10 @@ "plasmid_name": "pHAGE-PTEN-R130G", "sequence-type": "addgene-full", "addgene_id": "116630", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -248353,7 +263416,10 @@ "plasmid_name": "pENTR-L1-U6-BsmBI-R5", "sequence-type": "addgene-full", "addgene_id": "141032", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL1", @@ -248379,7 +263445,10 @@ "plasmid_name": "LI C-D Dest", "sequence-type": "addgene-full", "addgene_id": "104518", - "references": [], + "references": [ + "https://doi.org/10.1111/mpp.12632", + "https://www.ncbi.nlm.nih.gov/pubmed/29077245" + ], "kit": null, "att_sites": [ "attR1", @@ -248417,7 +263486,6 @@ "plasmid_name": "R777-E281 Hs.RHOC", "sequence-type": "depositor-full", "addgene_id": "70565", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -248445,7 +263513,10 @@ "plasmid_name": "3xflag-APEX2-NES", "sequence-type": "addgene-full", "addgene_id": "164623", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "att_sites": [ "attB1", @@ -248492,7 +263563,10 @@ "plasmid_name": "pCellFree_G03 TFAP2B", "sequence-type": "addgene-full", "addgene_id": "67092", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "att_sites": [ "attB1", @@ -248529,7 +263603,10 @@ "plasmid_name": "pDESTmycMOV10", "sequence-type": "depositor-full", "addgene_id": "19875", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -248578,7 +263655,6 @@ "plasmid_name": "g4s pD42", "sequence-type": "addgene-full", "addgene_id": "117449", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -248617,7 +263693,10 @@ "plasmid_name": "pDEST/hCx43-EGFP-N1", "sequence-type": "addgene-full", "addgene_id": "40907", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.111.257964", + "https://www.ncbi.nlm.nih.gov/pubmed/22328533" + ], "kit": null, "att_sites": [ "attB1", @@ -248659,7 +263738,10 @@ "plasmid_name": "pDONR223_GPR141_p.T6N", "sequence-type": "addgene-full", "addgene_id": "81364", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -248691,7 +263773,10 @@ "plasmid_name": "pENTR-R4R3-mRuby-N", "sequence-type": "addgene-full", "addgene_id": "113752", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -248726,7 +263811,10 @@ "plasmid_name": "pENTR223-PLXNB2", "sequence-type": "addgene-full", "addgene_id": "86236", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "att_sites": [ "attL1", @@ -248755,7 +263843,10 @@ "plasmid_name": "TBX5-FLAG in pLX303", "sequence-type": "addgene-full", "addgene_id": "42563", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/23245941" + ], "kit": null, "att_sites": [ "attB1", @@ -248815,7 +263906,10 @@ "plasmid_name": "pDONR221-SLC9C2_STOP", "sequence-type": "depositor-full", "addgene_id": "161330", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -248846,7 +263940,10 @@ "plasmid_name": "pDONR223-ERBB4", "sequence-type": "addgene-full", "addgene_id": "23875", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -248878,7 +263975,10 @@ "plasmid_name": "pDONR221_UCP3", "sequence-type": "addgene-full", "addgene_id": "132258", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -248909,7 +264009,6 @@ "plasmid_name": "pDONR221-ets2", "sequence-type": "addgene-full", "addgene_id": "192724", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -248940,7 +264039,10 @@ "plasmid_name": "SYMPK", "sequence-type": "addgene-full", "addgene_id": "156071", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -248983,7 +264085,10 @@ "plasmid_name": "pDONR221_SLC25A22", "sequence-type": "addgene-full", "addgene_id": "132051", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -249014,7 +264119,10 @@ "plasmid_name": "pMpGE_En03-sgRNA_Target2 (Mpphot)", "sequence-type": "addgene-full", "addgene_id": "186727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbrc.2018.06.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29885839" + ], "kit": null, "att_sites": [ "attL1", @@ -249046,7 +264154,10 @@ "plasmid_name": "pHAGE-NOTCH2NL-G137L", "sequence-type": "addgene-full", "addgene_id": "116439", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -249101,7 +264212,10 @@ "plasmid_name": "MAC-IFITM3", "sequence-type": "addgene-full", "addgene_id": "172419", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -249146,7 +264260,6 @@ "plasmid_name": "pAG416GAL-1x-ccdB-6stop", "sequence-type": "addgene-full", "addgene_id": "203519", - "references": [], "kit": null, "att_sites": [ "attR1" @@ -249200,7 +264313,9 @@ "plasmid_name": "pDEST17-LAP3", "sequence-type": "addgene-full", "addgene_id": "217661", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-4644671/v1" + ], "kit": null, "att_sites": [ "attB1", @@ -249234,7 +264349,10 @@ "plasmid_name": "pHD57 [Tol2-UAS:sypb-egfp-cry2-polyA]", "sequence-type": "addgene-full", "addgene_id": "198381", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-35324-z", + "https://www.ncbi.nlm.nih.gov/pubmed/36535932" + ], "kit": null, "file": "data/addgene_plasmids/198381.addgene-full.gb" }, @@ -249243,7 +264361,10 @@ "plasmid_name": "pLX304-EZH1-Y727F", "sequence-type": "addgene-full", "addgene_id": "203582", - "references": [], + "references": [ + "https://doi.org/10.1126/scitranslmed.aal5272", + "https://www.ncbi.nlm.nih.gov/pubmed/28701475" + ], "kit": null, "att_sites": [ "attB1", @@ -249302,7 +264423,6 @@ "plasmid_name": "pHAGE-CMV-Flag-TLK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135278", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -249356,7 +264476,6 @@ "plasmid_name": "IDG_FXYD3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161633", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -249415,7 +264534,6 @@ "plasmid_name": "pEN_TT CXADR-V5", "sequence-type": "addgene-full", "addgene_id": "220358", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -249446,7 +264564,10 @@ "plasmid_name": "pGWB522", "sequence-type": "depositor-full", "addgene_id": "74864", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -249494,7 +264615,10 @@ "plasmid_name": "pDONR223-SYK", "sequence-type": "addgene-full", "addgene_id": "23907", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -249526,7 +264650,10 @@ "plasmid_name": "pGC245", "sequence-type": "depositor-full", "addgene_id": "19638", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -249567,7 +264694,10 @@ "plasmid_name": "p221z-dCAS9p-t35s", "sequence-type": "addgene-full", "addgene_id": "118387", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "att_sites": [ "attL1", @@ -249601,7 +264731,10 @@ "plasmid_name": "pHAGE-FGFR3", "sequence-type": "addgene-full", "addgene_id": "116742", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -249655,7 +264788,10 @@ "plasmid_name": "pSGE_574_S2-3-GATA_dCP", "sequence-type": "depositor-full", "addgene_id": "71157", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -249688,7 +264824,10 @@ "plasmid_name": "pDONRPEX18Km-SceI-pheS", "sequence-type": "addgene-full", "addgene_id": "111610", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.03909-14", + "https://www.ncbi.nlm.nih.gov/pubmed/25795676" + ], "kit": null, "file": "data/addgene_plasmids/111610.addgene-full.gb" }, @@ -249697,7 +264836,6 @@ "plasmid_name": "R777-E071 Hs.EXOC3", "sequence-type": "depositor-full", "addgene_id": "70355", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -249726,7 +264864,10 @@ "plasmid_name": "pSN001 pME minprom_mCerulean", "sequence-type": "addgene-full", "addgene_id": "195959", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL1", @@ -249762,7 +264903,10 @@ "plasmid_name": "pDEST1K18ms", "sequence-type": "depositor-full", "addgene_id": "72646", - "references": [], + "references": [ + "https://doi.org/10.1094/PHYTO-02-21-0057-R", + "https://www.ncbi.nlm.nih.gov/pubmed/34032522" + ], "kit": null, "att_sites": [ "attR1" @@ -249799,7 +264943,10 @@ "plasmid_name": "pLenti-PGK-Hygro-PIP-FUCCI", "sequence-type": "addgene-full", "addgene_id": "138714", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "att_sites": [ "attB1", @@ -249868,7 +265015,10 @@ "plasmid_name": "pYPQ290-E848A", "sequence-type": "addgene-full", "addgene_id": "129675", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -249900,7 +265050,10 @@ "plasmid_name": "pHAGE-PIK3CG-D192G", "sequence-type": "addgene-full", "addgene_id": "116576", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -249955,7 +265108,10 @@ "plasmid_name": "tetO-FHL2", "sequence-type": "addgene-full", "addgene_id": "170686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -250017,7 +265173,10 @@ "plasmid_name": "p413TEF1-ATR1(pYL573)", "sequence-type": "addgene-full", "addgene_id": "178288", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -250062,7 +265221,10 @@ "plasmid_name": "pDONR221-SLC5A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161407", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -250093,7 +265255,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-let-7", "sequence-type": "depositor-full", "addgene_id": "46662", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -250143,7 +265308,10 @@ "plasmid_name": "pLenti CMV GFP DEST (736-1)", "sequence-type": "addgene-full", "addgene_id": "19732", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -250209,7 +265377,10 @@ "plasmid_name": "pT2-cryR;dll4CE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90143", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -250257,7 +265428,10 @@ "plasmid_name": "pRQ-hRasV12", "sequence-type": "depositor-full", "addgene_id": "18113", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0801505105", + "https://www.ncbi.nlm.nih.gov/pubmed/18378907" + ], "kit": null, "att_sites": [ "attB1", @@ -250303,7 +265477,10 @@ "plasmid_name": "Active Wnt2B-V5", "sequence-type": "addgene-full", "addgene_id": "43808", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -250351,7 +265528,10 @@ "plasmid_name": "pENTR223-CMV-Cre-U6-sgNotch1#1-U6-sgRb1-U6-sgTrp53-U6-sgRbl2", "sequence-type": "addgene-full", "addgene_id": "209068", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-21-1991", + "https://www.ncbi.nlm.nih.gov/pubmed/34810201" + ], "kit": null, "file": "data/addgene_plasmids/209068.addgene-full.gb" }, @@ -250360,7 +265540,10 @@ "plasmid_name": "pHAGE-TGFB1-P10L", "sequence-type": "addgene-full", "addgene_id": "116696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -250410,7 +265593,6 @@ "plasmid_name": "pLIX403-ccdB-Blast", "sequence-type": "addgene-full", "addgene_id": "158560", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -250468,7 +265650,10 @@ "plasmid_name": "pENTR221-CCL5.Pro", "sequence-type": "addgene-full", "addgene_id": "79492", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL1", @@ -250499,7 +265684,10 @@ "plasmid_name": "pcDNA3.1_nV5-AMOTL2", "sequence-type": "addgene-full", "addgene_id": "172999", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -250550,7 +265738,9 @@ "plasmid_name": "pLX317-MBNL2", "sequence-type": "addgene-full", "addgene_id": "115444", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "att_sites": [ "attB1", @@ -250610,7 +265800,10 @@ "plasmid_name": "pDONR221_SLC7A4", "sequence-type": "addgene-full", "addgene_id": "132185", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -250641,7 +265834,10 @@ "plasmid_name": "pENTR223-LMP2A", "sequence-type": "addgene-full", "addgene_id": "195816", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -250670,7 +265866,10 @@ "plasmid_name": "pGC249", "sequence-type": "depositor-full", "addgene_id": "19676", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR3", @@ -250710,7 +265909,10 @@ "plasmid_name": "pLenti6.2-3xFLAG-V5-ccdB", "sequence-type": "addgene-full", "addgene_id": "87072", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.05.039", + "https://www.ncbi.nlm.nih.gov/pubmed/25036637" + ], "kit": null, "att_sites": [ "attR1", @@ -250774,7 +265976,10 @@ "plasmid_name": "Flag-HA-USP48", "sequence-type": "addgene-full", "addgene_id": "22585", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -250819,7 +266024,6 @@ "plasmid_name": "R777-E197 Hs.PRKAB2", "sequence-type": "depositor-full", "addgene_id": "70481", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -250847,7 +266051,10 @@ "plasmid_name": "C514-E42: attB5r-RU5u-Strep2-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162961", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -250877,7 +266084,10 @@ "plasmid_name": "pAG306GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14332", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -250935,7 +266145,10 @@ "plasmid_name": "pLentiPGK Puro DEST JNKKTR AA Clover", "sequence-type": "addgene-full", "addgene_id": "90238", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "att_sites": [ "attB1", @@ -250997,7 +266210,10 @@ "plasmid_name": "pDEST-FRT/T0-GFP-BRCA1 1364-1437", "sequence-type": "depositor-full", "addgene_id": "71119", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1" @@ -251041,7 +266257,10 @@ "plasmid_name": "pDONR223_DVL1_WT", "sequence-type": "addgene-full", "addgene_id": "82110", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -251070,7 +266289,10 @@ "plasmid_name": "p8291 MSCV-Neo C-HA 18E7 \u0394DLLC", "sequence-type": "addgene-full", "addgene_id": "184523", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "att_sites": [ "attB1", @@ -251114,7 +266336,10 @@ "plasmid_name": "pDONR223_PRR23B_p.A246T", "sequence-type": "addgene-full", "addgene_id": "81359", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -251146,7 +266371,10 @@ "plasmid_name": "MAC_N_TBR1", "sequence-type": "addgene-full", "addgene_id": "167803", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -251191,7 +266419,10 @@ "plasmid_name": "pSLIK-Hygro", "sequence-type": "addgene-full", "addgene_id": "25737", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0606179103", + "https://www.ncbi.nlm.nih.gov/pubmed/16945906" + ], "kit": null, "att_sites": [ "attR1", @@ -251259,7 +266490,10 @@ "plasmid_name": "pDONR221_SLC14A2", "sequence-type": "addgene-full", "addgene_id": "132265", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -251290,7 +266524,10 @@ "plasmid_name": "TFORF3531", "sequence-type": "depositor-full", "addgene_id": "145007", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -251350,7 +266587,10 @@ "plasmid_name": "pLenti CMV-SLC7A11-sh926R-FLAG-IRES-Hygro", "sequence-type": "addgene-full", "addgene_id": "118702", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.042", + "https://www.ncbi.nlm.nih.gov/pubmed/27368101" + ], "kit": null, "att_sites": [ "attB1", @@ -251406,7 +266646,10 @@ "plasmid_name": "TFORF3271", "sequence-type": "addgene-full", "addgene_id": "144747", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1" @@ -251464,7 +266707,10 @@ "plasmid_name": "p3E-rab11al", "sequence-type": "addgene-full", "addgene_id": "109663", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -251495,7 +266741,6 @@ "plasmid_name": "pENTR223 Rab11A Q70L-STOP", "sequence-type": "addgene-full", "addgene_id": "228033", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -251524,7 +266769,10 @@ "plasmid_name": "pDONR221-SLC24A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161156", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -251555,7 +266803,6 @@ "plasmid_name": "pUC-L1L2", "sequence-type": "addgene-full", "addgene_id": "114017", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -251594,7 +266841,10 @@ "plasmid_name": "pDONR223_RASA1_p.R194C", "sequence-type": "addgene-full", "addgene_id": "81573", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -251626,7 +266876,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_F3194S", "sequence-type": "addgene-full", "addgene_id": "187140", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -251671,7 +266924,10 @@ "plasmid_name": "pDONR223_PTEN_p.F90S", "sequence-type": "addgene-full", "addgene_id": "81693", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -251703,7 +266959,6 @@ "plasmid_name": "p41Hyg 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58547", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -251759,7 +267014,10 @@ "plasmid_name": "p8224 pLIX-PTPN14 \u0394PPXY1/2", "sequence-type": "addgene-full", "addgene_id": "221644", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "att_sites": [ "attB1", @@ -251814,7 +267072,10 @@ "plasmid_name": "5'-3xFLAG Mllt1-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212066", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -251855,7 +267116,10 @@ "plasmid_name": "p3E-CDC42", "sequence-type": "addgene-full", "addgene_id": "109583", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -251886,7 +267150,9 @@ "plasmid_name": "p3E-CMVmin:GFPmem no-pA", "sequence-type": "depositor-full", "addgene_id": "80824", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -251925,7 +267191,10 @@ "plasmid_name": "pAG303GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14206", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -251983,7 +267252,10 @@ "plasmid_name": "actc1b-Cav3-mKate2", "sequence-type": "addgene-full", "addgene_id": "109518", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109518.addgene-full.gb" }, @@ -251992,7 +267264,6 @@ "plasmid_name": "pEF 1-35S-4", "sequence-type": "depositor-full", "addgene_id": "20091", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -252025,7 +267296,10 @@ "plasmid_name": "RBM14_pLX307", "sequence-type": "addgene-full", "addgene_id": "98367", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -252085,7 +267359,10 @@ "plasmid_name": "pDONR223_CYLC2_p.D299Y", "sequence-type": "addgene-full", "addgene_id": "81608", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -252117,7 +267394,9 @@ "plasmid_name": "pMpGWB333", "sequence-type": "depositor-full", "addgene_id": "68661", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -252167,7 +267446,10 @@ "plasmid_name": "pDONR223-ZNF616", "sequence-type": "addgene-full", "addgene_id": "87977", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -252196,7 +267478,10 @@ "plasmid_name": "pDONR223_PTEN_p.H123Y", "sequence-type": "addgene-full", "addgene_id": "82815", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -252225,7 +267510,10 @@ "plasmid_name": "pJA256", "sequence-type": "depositor-full", "addgene_id": "21509", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "att_sites": [ "attL3", @@ -252259,7 +267547,6 @@ "plasmid_name": "pLenti6.3/EV", "sequence-type": "addgene-full", "addgene_id": "120848", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -252318,7 +267605,10 @@ "plasmid_name": "pDONR221_MFSD4B", "sequence-type": "addgene-full", "addgene_id": "131929", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -252349,7 +267639,6 @@ "plasmid_name": "pGW_RUBY_EggCas9", "sequence-type": "addgene-full", "addgene_id": "225990", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -252390,7 +267679,10 @@ "plasmid_name": "pPMW-attB", "sequence-type": "depositor-full", "addgene_id": "61814", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1007498", + "https://www.ncbi.nlm.nih.gov/pubmed/29995890" + ], "kit": null, "file": "data/addgene_plasmids/61814.depositor-full.gb" }, @@ -252399,7 +267691,10 @@ "plasmid_name": "TFORF3392", "sequence-type": "addgene-full", "addgene_id": "144868", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -252459,7 +267754,9 @@ "plasmid_name": "pPB-cT3G-cERP2-TERF1", "sequence-type": "addgene-full", "addgene_id": "222542", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -252505,7 +267802,10 @@ "plasmid_name": "pHAGE-BRAF-K601E", "sequence-type": "addgene-full", "addgene_id": "116168", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -252561,7 +267861,6 @@ "plasmid_name": "pLEX_307", "sequence-type": "addgene-full", "addgene_id": "41392", - "references": [], "kit": null, "file": "data/addgene_plasmids/41392.addgene-full.gb" }, @@ -252570,7 +267869,10 @@ "plasmid_name": "TFORF3132", "sequence-type": "addgene-full", "addgene_id": "144608", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -252630,7 +267932,10 @@ "plasmid_name": "pHAGE-EGFR-P772R", "sequence-type": "addgene-full", "addgene_id": "116288", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -252684,7 +267989,10 @@ "plasmid_name": "KA601: pMVP (L3-L2) pA; EF1a::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121805", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -252720,7 +268028,10 @@ "plasmid_name": "ATX3-D1", "sequence-type": "addgene-full", "addgene_id": "184246", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "att_sites": [ "attB2" @@ -252753,7 +268064,10 @@ "plasmid_name": "pDONR221-MFSD1_STOP", "sequence-type": "addgene-full", "addgene_id": "161082", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -252784,7 +268098,9 @@ "plasmid_name": "nTALECD for_CYO1 exon2_1397NC", "sequence-type": "addgene-full", "addgene_id": "193377", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "att_sites": [ "attB1", @@ -252831,7 +268147,10 @@ "plasmid_name": "pDONR223_mCherry", "sequence-type": "addgene-full", "addgene_id": "221470", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attL1", @@ -252863,7 +268182,10 @@ "plasmid_name": "pAG424GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14248", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -252922,7 +268244,10 @@ "plasmid_name": "pDONR221_SLCO2B1", "sequence-type": "addgene-full", "addgene_id": "131866", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -252953,7 +268278,10 @@ "plasmid_name": "TFORF3217", "sequence-type": "addgene-full", "addgene_id": "144693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -253013,7 +268341,10 @@ "plasmid_name": "pENTR-L3-LucmiR-EGFP-L2", "sequence-type": "depositor-full", "addgene_id": "32588", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL2", @@ -253052,7 +268383,10 @@ "plasmid_name": "p3E-ML1N*2", "sequence-type": "depositor-full", "addgene_id": "67678", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attL3", @@ -253083,7 +268417,10 @@ "plasmid_name": "TFORF3451", "sequence-type": "addgene-full", "addgene_id": "144927", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -253143,7 +268480,10 @@ "plasmid_name": "PRPF18", "sequence-type": "addgene-full", "addgene_id": "155846", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -253187,7 +268527,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp16", "sequence-type": "addgene-full", "addgene_id": "168941", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -253216,7 +268559,10 @@ "plasmid_name": "TFORF3097", "sequence-type": "addgene-full", "addgene_id": "144573", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -253276,7 +268622,10 @@ "plasmid_name": "pDONR223_IRF4_WT", "sequence-type": "addgene-full", "addgene_id": "81747", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -253288,7 +268637,9 @@ "plasmid_name": "pME-3xHA-BirA-T2A-mCherry-caax (JDW 889)", "sequence-type": "addgene-full", "addgene_id": "224512", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224512.addgene-full.gb" }, @@ -253297,7 +268648,10 @@ "plasmid_name": "R620-M19-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-529)-3C-His8-SBP K417T/E484K/N501Y", "sequence-type": "addgene-full", "addgene_id": "170203", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -253353,7 +268707,10 @@ "plasmid_name": "pDONR221-SLC6A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161362", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -253384,7 +268741,9 @@ "plasmid_name": "pMpGWB124", "sequence-type": "depositor-full", "addgene_id": "68578", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -253432,7 +268791,10 @@ "plasmid_name": "pEN_TT Linker", "sequence-type": "addgene-full", "addgene_id": "192307", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -253460,7 +268822,6 @@ "plasmid_name": "Hs.KRAS4b S181A", "sequence-type": "depositor-full", "addgene_id": "83136", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -253489,7 +268850,10 @@ "plasmid_name": "BCL6-GFP in Artichoke", "sequence-type": "addgene-full", "addgene_id": "169931", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2925-1", + "https://www.ncbi.nlm.nih.gov/pubmed/33208943" + ], "kit": null, "att_sites": [ "attB1", @@ -253559,7 +268923,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf8", "sequence-type": "addgene-full", "addgene_id": "158377", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -253604,7 +268971,6 @@ "plasmid_name": "pLPC-C-SF-TAP-DEST-TLK1- M566T", "sequence-type": "addgene-full", "addgene_id": "218831", - "references": [], "kit": null, "att_sites": [ "attB2" @@ -253639,7 +269005,10 @@ "plasmid_name": "actc1b-mKate2-RhoAa", "sequence-type": "addgene-full", "addgene_id": "109525", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -253681,7 +269050,10 @@ "plasmid_name": "PB-TET-mSox2", "sequence-type": "depositor-full", "addgene_id": "20908", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "att_sites": [ "attB1", @@ -253730,7 +269102,10 @@ "plasmid_name": "453 pCSMTN5ICD", "sequence-type": "depositor-full", "addgene_id": "22466", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attB1", @@ -253770,7 +269145,10 @@ "plasmid_name": "pEntry_MERS-CoV-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168833", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -253799,7 +269177,6 @@ "plasmid_name": "R777-E167 Hs.PIK3CD", "sequence-type": "depositor-full", "addgene_id": "70451", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -253827,7 +269204,10 @@ "plasmid_name": "pDEST-CMV-3xFLAG-gateway-EGFP", "sequence-type": "addgene-full", "addgene_id": "122845", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attR1", @@ -253884,7 +269264,10 @@ "plasmid_name": "pDONR221-SLC26A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161210", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -253915,7 +269298,10 @@ "plasmid_name": "pENTR-D-kcnj10b", "sequence-type": "addgene-full", "addgene_id": "173138", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -253946,7 +269332,10 @@ "plasmid_name": "pMuLE ENTR 7SK L1-R5", "sequence-type": "depositor-full", "addgene_id": "62106", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -253977,7 +269366,9 @@ "plasmid_name": "pRRLHygro-pEF1a-p53ashL344P-mKate2-splitmVenusC", "sequence-type": "depositor-full", "addgene_id": "69587", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "att_sites": [ "attB1", @@ -254038,7 +269429,10 @@ "plasmid_name": "pCM1.26", "sequence-type": "depositor-full", "addgene_id": "21377", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL4", @@ -254070,7 +269464,10 @@ "plasmid_name": "pDONR223_OR2M2_p.P182S", "sequence-type": "addgene-full", "addgene_id": "81635", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -254102,7 +269499,10 @@ "plasmid_name": "pEBTetDBl-CLIP-FOP", "sequence-type": "addgene-full", "addgene_id": "136846", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -254146,7 +269546,10 @@ "plasmid_name": "pACT4-DM", "sequence-type": "addgene-full", "addgene_id": "111233", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-61779-455-1_4", + "https://www.ncbi.nlm.nih.gov/pubmed/22218854" + ], "kit": null, "att_sites": [ "attR1", @@ -254186,7 +269589,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.F777S", "sequence-type": "addgene-full", "addgene_id": "82828", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -254216,7 +269622,10 @@ "plasmid_name": "pHAGE-ERBB3-G40S", "sequence-type": "addgene-full", "addgene_id": "116361", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -254270,7 +269679,10 @@ "plasmid_name": "pDONR221_SLC37A4", "sequence-type": "addgene-full", "addgene_id": "131914", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -254301,7 +269713,10 @@ "plasmid_name": "pDONR223_IKZF5_WT", "sequence-type": "addgene-full", "addgene_id": "81855", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -254333,7 +269748,10 @@ "plasmid_name": "pDONR221-ZNF665", "sequence-type": "depositor-full", "addgene_id": "101448", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -254364,7 +269782,6 @@ "plasmid_name": "pCLXEBR-pTF-Epo", "sequence-type": "addgene-full", "addgene_id": "114285", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -254417,7 +269834,10 @@ "plasmid_name": "pCFJ1000", "sequence-type": "depositor-full", "addgene_id": "44475", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attR3", @@ -254453,7 +269873,10 @@ "plasmid_name": "pDONR221-kcnk3b", "sequence-type": "addgene-full", "addgene_id": "208986", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -254484,7 +269907,10 @@ "plasmid_name": "pSRK2721", "sequence-type": "depositor-full", "addgene_id": "78572", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ab.2016.04.006", + "https://www.ncbi.nlm.nih.gov/pubmed/27105777" + ], "kit": null, "att_sites": [ "attR1", @@ -254535,7 +269961,10 @@ "plasmid_name": "p5E-6xgata2aECE", "sequence-type": "addgene-full", "addgene_id": "132969", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "att_sites": [ "attL4", @@ -254566,7 +269995,6 @@ "plasmid_name": "Hs.NRAS Q61L", "sequence-type": "depositor-full", "addgene_id": "83178", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -254591,7 +270019,6 @@ "plasmid_name": "pAM-PAT-35S-GW-Luc", "sequence-type": "addgene-full", "addgene_id": "80678", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -254631,7 +270058,10 @@ "plasmid_name": "pAG424GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14151", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -254692,7 +270122,10 @@ "plasmid_name": "TFORF3505", "sequence-type": "addgene-full", "addgene_id": "144981", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -254752,7 +270185,9 @@ "plasmid_name": "pDONR221-G6PD(1of2)", "sequence-type": "addgene-full", "addgene_id": "166176", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -254783,7 +270218,10 @@ "plasmid_name": "p3E-rab42b", "sequence-type": "addgene-full", "addgene_id": "109711", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -254814,7 +270252,10 @@ "plasmid_name": "TFORF3159", "sequence-type": "addgene-full", "addgene_id": "144635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -254874,7 +270315,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp9", "sequence-type": "depositor-full", "addgene_id": "168958", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -254903,7 +270347,10 @@ "plasmid_name": "pDEST 527-PHL2", "sequence-type": "addgene-full", "addgene_id": "118670", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -254945,7 +270392,10 @@ "plasmid_name": "pDONR223_STK11_p.D194Y", "sequence-type": "addgene-full", "addgene_id": "81401", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -254977,7 +270427,10 @@ "plasmid_name": "pEPYCdKN0012", "sequence-type": "addgene-full", "addgene_id": "196153", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attB1", @@ -255017,7 +270470,10 @@ "plasmid_name": "KL202: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS-LSD1", "sequence-type": "addgene-full", "addgene_id": "121838", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -255051,7 +270507,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS", "sequence-type": "depositor-full", "addgene_id": "59388", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.045005.114", + "https://www.ncbi.nlm.nih.gov/pubmed/24860013" + ], "kit": null, "att_sites": [ "attB1", @@ -255096,7 +270555,10 @@ "plasmid_name": "KP001: pMVP (L5-L4) Neo-P2A", "sequence-type": "addgene-full", "addgene_id": "121717", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -255132,7 +270594,10 @@ "plasmid_name": "pDONR223_TSTA3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82967", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -255161,7 +270626,10 @@ "plasmid_name": "pMuLE ENTR CMV mCherry L1-R5", "sequence-type": "depositor-full", "addgene_id": "62148", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -255197,7 +270665,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP13_nostop", "sequence-type": "addgene-full", "addgene_id": "168528", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -255226,7 +270697,9 @@ "plasmid_name": "pDRFLIP37", "sequence-type": "depositor-full", "addgene_id": "65515", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -255277,7 +270750,10 @@ "plasmid_name": "pSGE_892_Nhe2_EcR-to-HLH4C_RB", "sequence-type": "depositor-full", "addgene_id": "71187", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -255310,7 +270786,6 @@ "plasmid_name": "pDEST51-LRRK2-G2019S", "sequence-type": "addgene-full", "addgene_id": "29401", - "references": [], "kit": null, "file": "data/addgene_plasmids/29401.addgene-full.gb" }, @@ -255319,7 +270794,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway mmu SE-Irf2bpl E", "sequence-type": "addgene-full", "addgene_id": "89374", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -255373,7 +270851,6 @@ "plasmid_name": "R777-E101 Hs.HRAS", "sequence-type": "depositor-full", "addgene_id": "70385", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -255402,7 +270879,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CAMK1D_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158167", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -255468,7 +270944,10 @@ "plasmid_name": "pLX304_zeo_mmFbxw7a", "sequence-type": "addgene-full", "addgene_id": "160102", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -255527,7 +271006,10 @@ "plasmid_name": "HJ601: pMVP (R4-R3) mCherry open", "sequence-type": "addgene-full", "addgene_id": "121733", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -255561,7 +271043,10 @@ "plasmid_name": "pDONR223_GFP", "sequence-type": "addgene-full", "addgene_id": "221469", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attL1", @@ -255594,7 +271079,10 @@ "plasmid_name": "pDONR223_PIH1D1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82943", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -255623,7 +271111,10 @@ "plasmid_name": "pFRT_TO_FLAGHA_PRKRA_sgRNA_PAM_mutant", "sequence-type": "addgene-full", "addgene_id": "106112", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "att_sites": [ "attB1", @@ -255668,7 +271159,10 @@ "plasmid_name": "p3E-EGFP-NS-MCS", "sequence-type": "depositor-full", "addgene_id": "75180", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -255708,7 +271202,10 @@ "plasmid_name": "pLEX307-SARS-CoV-2-3CL-C145A", "sequence-type": "addgene-full", "addgene_id": "160279", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -255768,7 +271265,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP12_stop", "sequence-type": "addgene-full", "addgene_id": "168677", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -255797,7 +271297,10 @@ "plasmid_name": "pENTR D-TOPO-C3_36", "sequence-type": "depositor-full", "addgene_id": "60277", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -255828,7 +271331,10 @@ "plasmid_name": "pHAGE-BRAF-K601T", "sequence-type": "addgene-full", "addgene_id": "116171", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -255883,7 +271389,10 @@ "plasmid_name": "p7052 pHAGE-P-CMVt-N-HA-GAW-AURKB", "sequence-type": "addgene-full", "addgene_id": "100142", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -255935,7 +271444,10 @@ "plasmid_name": "p{ie1-eGFP::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182174", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -255982,7 +271494,10 @@ "plasmid_name": "pDONR223_PRR23B_WT", "sequence-type": "addgene-full", "addgene_id": "81871", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -256014,7 +271529,6 @@ "plasmid_name": "p667-UBC-TAOK1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189887", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -256079,7 +271593,10 @@ "plasmid_name": "pYPQ289-RVR", "sequence-type": "addgene-full", "addgene_id": "138127", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -256111,7 +271628,10 @@ "plasmid_name": "pLenti CMV/TO Hygro DEST (693-2)", "sequence-type": "depositor-full", "addgene_id": "17291", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -256174,7 +271694,10 @@ "plasmid_name": "pDONR223_ADORA2A_p.R220W", "sequence-type": "addgene-full", "addgene_id": "81425", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -256206,7 +271729,10 @@ "plasmid_name": "pcDNA3.2 TDP-43 NLS1, 5F-L YFP", "sequence-type": "addgene-full", "addgene_id": "84913", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09320", + "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + ], "kit": null, "att_sites": [ "attB1", @@ -256260,7 +271786,9 @@ "plasmid_name": "pDEST17-His10-DDX5(kf)-SNAP", "sequence-type": "addgene-full", "addgene_id": "166152", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attB1", @@ -256297,7 +271825,10 @@ "plasmid_name": "pSRK51", "sequence-type": "addgene-full", "addgene_id": "223722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crstbi.2023.100106", + "https://www.ncbi.nlm.nih.gov/pubmed/37822550" + ], "kit": null, "att_sites": [ "attB1", @@ -256339,7 +271870,10 @@ "plasmid_name": "pDONR221-SLC4A8_STOP", "sequence-type": "depositor-full", "addgene_id": "161466", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -256370,7 +271904,10 @@ "plasmid_name": "pHAGE-EGFR-R108G", "sequence-type": "addgene-full", "addgene_id": "116291", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -256424,7 +271961,10 @@ "plasmid_name": "pAC1820_pCR8-DR-RG6-SA-DR", "sequence-type": "addgene-full", "addgene_id": "118654", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -256458,7 +271998,10 @@ "plasmid_name": "TFORF3135", "sequence-type": "addgene-full", "addgene_id": "144611", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -256519,7 +272062,10 @@ "plasmid_name": "p3E-rab4a-DN", "sequence-type": "addgene-full", "addgene_id": "109735", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -256550,7 +272096,10 @@ "plasmid_name": "pCS2-LRP6-3XFlag", "sequence-type": "addgene-full", "addgene_id": "180144", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-78019-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33299006" + ], "kit": null, "att_sites": [ "attB1", @@ -256591,7 +272140,10 @@ "plasmid_name": "pBKWH-p53", "sequence-type": "addgene-full", "addgene_id": "133900", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attB1", @@ -256629,7 +272181,10 @@ "plasmid_name": "pDONR221-SLC28A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161234", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -256661,7 +272216,10 @@ "plasmid_name": "pDONR223_GATA3_p.S140F", "sequence-type": "addgene-full", "addgene_id": "81611", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -256693,7 +272251,10 @@ "plasmid_name": "dg263_pENTR_ChrimsonCel", "sequence-type": "depositor-full", "addgene_id": "66101", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.177956", + "https://www.ncbi.nlm.nih.gov/pubmed/26022242" + ], "kit": null, "att_sites": [ "attL1", @@ -256727,7 +272288,10 @@ "plasmid_name": "TFORF2949", "sequence-type": "addgene-full", "addgene_id": "144425", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -256787,7 +272351,10 @@ "plasmid_name": "pME nls-eos", "sequence-type": "depositor-full", "addgene_id": "73791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2010.04.023", + "https://www.ncbi.nlm.nih.gov/pubmed/20460180" + ], "kit": null, "att_sites": [ "attL1", @@ -256821,7 +272388,10 @@ "plasmid_name": "actc1b-BTK-mKate2", "sequence-type": "addgene-full", "addgene_id": "109501", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -256862,7 +272432,10 @@ "plasmid_name": "pMartini Gate A R1-R2", "sequence-type": "depositor-full", "addgene_id": "36425", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "file": "data/addgene_plasmids/36425.depositor-full.gb" }, @@ -256871,7 +272444,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-1", "sequence-type": "depositor-full", "addgene_id": "46704", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -256921,7 +272497,10 @@ "plasmid_name": "TFORF3395", "sequence-type": "addgene-full", "addgene_id": "144871", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -256981,7 +272560,10 @@ "plasmid_name": "RBM8A", "sequence-type": "addgene-full", "addgene_id": "155910", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -257024,7 +272606,6 @@ "plasmid_name": "pGWG_RUBYseed", "sequence-type": "addgene-full", "addgene_id": "225989", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -257065,7 +272646,10 @@ "plasmid_name": "pcDNA3_SP-AVPR2-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194373", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -257122,7 +272706,10 @@ "plasmid_name": "pHAGE-ERBB2-P885S", "sequence-type": "addgene-full", "addgene_id": "116345", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -257176,7 +272763,10 @@ "plasmid_name": "pDONR221_MPC2", "sequence-type": "addgene-full", "addgene_id": "131930", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -257207,7 +272797,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep76", "sequence-type": "addgene-full", "addgene_id": "136862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -257252,7 +272845,6 @@ "plasmid_name": "PSMD3_BirA_Nterm", "sequence-type": "addgene-full", "addgene_id": "221526", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -257296,7 +272888,10 @@ "plasmid_name": "pHWBF07exp", "sequence-type": "addgene-full", "addgene_id": "130832", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attB1", @@ -257332,7 +272927,10 @@ "plasmid_name": "pDONR223_MDM2_WT", "sequence-type": "addgene-full", "addgene_id": "82897", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -257361,7 +272959,10 @@ "plasmid_name": "pSLIK 3xFLAG-MTUS1 zeo", "sequence-type": "addgene-full", "addgene_id": "192323", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -257426,7 +273027,10 @@ "plasmid_name": "pDONR223 HCoV-229E NSP12_nostop", "sequence-type": "addgene-full", "addgene_id": "168738", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -257456,7 +273060,10 @@ "plasmid_name": "pAG303GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14254", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -257512,7 +273119,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP2", "sequence-type": "addgene-full", "addgene_id": "158353", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -257557,7 +273167,10 @@ "plasmid_name": "mKate2-P2A-APEX2-OSBP", "sequence-type": "depositor-full", "addgene_id": "67664", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -257602,7 +273215,10 @@ "plasmid_name": "pDONR221-TMEM104_STOP", "sequence-type": "depositor-full", "addgene_id": "161428", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -257633,7 +273249,10 @@ "plasmid_name": "RCASBP-Y CHA", "sequence-type": "depositor-full", "addgene_id": "11480", - "references": [], + "references": [ + "https://doi.org/10.1093/dnares/8.5.221", + "https://www.ncbi.nlm.nih.gov/pubmed/11759842" + ], "kit": null, "att_sites": [ "attR1", @@ -257667,7 +273286,10 @@ "plasmid_name": "pENTR-R4r-ECFP-R3r", "sequence-type": "depositor-full", "addgene_id": "32594", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attR3", @@ -257702,7 +273324,10 @@ "plasmid_name": "TFORF3427", "sequence-type": "addgene-full", "addgene_id": "144903", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -257762,7 +273387,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 14-22 KR", "sequence-type": "addgene-full", "addgene_id": "129300", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attB1", @@ -257806,7 +273434,10 @@ "plasmid_name": "pDONR223_TBL1XR1_p.R166Q", "sequence-type": "addgene-full", "addgene_id": "81483", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -257838,7 +273469,10 @@ "plasmid_name": "pXN21-Dest", "sequence-type": "addgene-full", "addgene_id": "105086", - "references": [], + "references": [ + "https://doi.org/10.1002/0471142301.ns0527s41", + "https://www.ncbi.nlm.nih.gov/pubmed/18428659" + ], "kit": null, "att_sites": [ "attR1", @@ -257888,7 +273522,6 @@ "plasmid_name": "pDONR221-deltaUBA-short-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "195398", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -257919,7 +273552,10 @@ "plasmid_name": "pDONR223_KRT26_WT", "sequence-type": "addgene-full", "addgene_id": "81763", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -257931,7 +273567,10 @@ "plasmid_name": "pDONR221-SLC4A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161346", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -257962,7 +273601,9 @@ "plasmid_name": "p3E-IRES-3xNLS-mScarlet-I3-pA (JDW 1360)", "sequence-type": "addgene-full", "addgene_id": "224536", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -258003,7 +273644,9 @@ "plasmid_name": "pMpGWB110", "sequence-type": "depositor-full", "addgene_id": "68564", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -258050,7 +273693,9 @@ "plasmid_name": "pDONR221-SOD2(v1)", "sequence-type": "addgene-full", "addgene_id": "166214", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -258081,7 +273726,10 @@ "plasmid_name": "pMH-SFB-BRCA2", "sequence-type": "addgene-full", "addgene_id": "99395", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0811159106", + "https://www.ncbi.nlm.nih.gov/pubmed/19369211" + ], "kit": null, "att_sites": [ "attB1", @@ -258120,7 +273768,10 @@ "plasmid_name": "TFORF3081", "sequence-type": "addgene-full", "addgene_id": "144557", - 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"references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -258393,7 +274055,10 @@ "plasmid_name": "IA201: pMAGIC (R4-R3) NLS-Sa dCas9-NLS", "sequence-type": "addgene-full", "addgene_id": "121821", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -258427,7 +274092,10 @@ "plasmid_name": "IY001: pMVP (L3-L2) BioID2 + polyA", "sequence-type": "addgene-full", "addgene_id": "121795", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -258461,7 +274129,10 @@ "plasmid_name": "pDONR223_CNBD1_p.L396P", "sequence-type": "addgene-full", "addgene_id": "81418", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -258493,7 +274164,10 @@ "plasmid_name": "pBA cMYC-PHL2", "sequence-type": "addgene-full", "addgene_id": "118669", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -258537,7 +274211,10 @@ "plasmid_name": "p3E-rab40b", "sequence-type": "addgene-full", "addgene_id": "109708", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -258568,7 +274245,10 @@ "plasmid_name": "HSPA8_pLX307", "sequence-type": "addgene-full", "addgene_id": "98343", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -258628,7 +274308,10 @@ "plasmid_name": "pEntry_HCoV-OC43-NS12.9", "sequence-type": "depositor-full", "addgene_id": "168944", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -258657,7 +274340,9 @@ "plasmid_name": "p5E-hs_ICAM_full (JDW 1047)", "sequence-type": "addgene-full", "addgene_id": "224479", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -258688,7 +274373,10 @@ "plasmid_name": "pDONR223_SPANXN4_WT", "sequence-type": "addgene-full", "addgene_id": "81998", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -258720,7 +274408,10 @@ "plasmid_name": "pBullet-cg-c", "sequence-type": "depositor-full", "addgene_id": "53070", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -258757,7 +274448,6 @@ "plasmid_name": "pDEST-Spe4-RfA-emiRFP703-stop", "sequence-type": "addgene-full", "addgene_id": "186386", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -258800,7 +274490,10 @@ "plasmid_name": "pCM5.40", "sequence-type": "depositor-full", "addgene_id": "19393", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -258831,7 +274524,10 @@ "plasmid_name": "TFORF2942", "sequence-type": "addgene-full", "addgene_id": "144418", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -258892,7 +274588,10 @@ "plasmid_name": "Wnt10B Non-STOP", "sequence-type": "depositor-full", "addgene_id": "34748", - "references": [], + "references": [ + "https://doi.org/10.1016/j.diff.2012.06.004", + "https://www.ncbi.nlm.nih.gov/pubmed/22784633" + ], "kit": null, "att_sites": [ "attL1", @@ -258923,7 +274622,10 @@ "plasmid_name": "pDONR221-ZNF347", "sequence-type": "depositor-full", "addgene_id": "101454", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -258954,7 +274656,10 @@ "plasmid_name": "pDONR223_KEAP1_p.L268P", "sequence-type": "addgene-full", "addgene_id": "82831", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -258983,7 +274688,6 @@ "plasmid_name": "Hs.KRAS4b Q61K", "sequence-type": "depositor-full", "addgene_id": "83164", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -259009,7 +274713,10 @@ "plasmid_name": "p35S_GFP-GUS", "sequence-type": "addgene-full", "addgene_id": "167122", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.220723.117", + "https://www.ncbi.nlm.nih.gov/pubmed/28784835" + ], "kit": null, "att_sites": [ "attB1", @@ -259050,7 +274757,10 @@ "plasmid_name": "pDONR223_SMAD4_p.V492F", "sequence-type": "addgene-full", "addgene_id": "82785", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -259079,7 +274789,10 @@ "plasmid_name": "369 pTol-lmo2:egfpDest", "sequence-type": "depositor-full", "addgene_id": "73488", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -259131,7 +274844,9 @@ "plasmid_name": "p3E-FRT-KanR-FRT pA", "sequence-type": "depositor-full", "addgene_id": "82601", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -259169,7 +274884,10 @@ "plasmid_name": "pDONR223_EYS_p.N269H", "sequence-type": "addgene-full", "addgene_id": "81557", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -259201,7 +274919,10 @@ "plasmid_name": "pDONR221-SLC2A5_STOP", "sequence-type": "depositor-full", "addgene_id": "161256", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -259232,7 +274953,10 @@ "plasmid_name": "actc1b-mKate2-rab4b", "sequence-type": "addgene-full", "addgene_id": "109647", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -259274,7 +274998,10 @@ "plasmid_name": "pENTR-ZmIAA21", "sequence-type": "addgene-full", "addgene_id": "188438", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -259305,7 +275032,10 @@ "plasmid_name": "TFORF3287", "sequence-type": "addgene-full", "addgene_id": "144763", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -259365,7 +275095,6 @@ "plasmid_name": "R777-E115 Hs.KRAS", "sequence-type": "depositor-full", "addgene_id": "70399", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -259394,7 +275123,10 @@ "plasmid_name": "pENTR-BS-AtMIR390a-B/c", "sequence-type": "addgene-full", "addgene_id": "199559", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkad747", + "https://www.ncbi.nlm.nih.gov/pubmed/37713607" + ], "kit": null, "att_sites": [ "attL1", @@ -259430,7 +275162,10 @@ "plasmid_name": "pDONR221_SLC26A11", "sequence-type": "addgene-full", "addgene_id": "131996", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -259461,7 +275196,10 @@ "plasmid_name": "R619-M96-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(318-529)-3C-His8-SBP", "sequence-type": "addgene-full", "addgene_id": "166020", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -259517,7 +275255,10 @@ "plasmid_name": "TFORF3007", "sequence-type": "addgene-full", "addgene_id": "144483", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -259577,7 +275318,6 @@ "plasmid_name": "R777-E119 Hs.KSR2", "sequence-type": "depositor-full", "addgene_id": "70403", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -259605,7 +275345,10 @@ "plasmid_name": "pDONR223_PIK3R3_WT", "sequence-type": "addgene-full", "addgene_id": "81903", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -259637,7 +275380,10 @@ "plasmid_name": "pDONR221-SLC2A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161292", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -259668,7 +275414,10 @@ "plasmid_name": "pMuLE ENTR SV40 tdTomato L5-L2", "sequence-type": "depositor-full", "addgene_id": "62154", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -259706,7 +275455,10 @@ "plasmid_name": "pDEST47-MCU-GFP", "sequence-type": "depositor-full", "addgene_id": "31732", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "att_sites": [ "attB1", @@ -259758,7 +275510,10 @@ "plasmid_name": "pENTR223-BcRF1(vTBP)", "sequence-type": "addgene-full", "addgene_id": "195832", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -259787,7 +275542,10 @@ "plasmid_name": "pENTR223-BDLF3", "sequence-type": "addgene-full", "addgene_id": "195786", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -259816,7 +275574,10 @@ "plasmid_name": "C512-E23: attB5r-mRuby3-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162945", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -259844,7 +275605,10 @@ "plasmid_name": "pLentiCMVblast_SLC38A2_N82A", "sequence-type": "addgene-full", "addgene_id": "156181", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0959", + "https://www.ncbi.nlm.nih.gov/pubmed/32341021" + ], "kit": null, "att_sites": [ "attB1", @@ -259904,7 +275668,6 @@ "plasmid_name": "DDX3X - I107V in pENTR", "sequence-type": "addgene-full", "addgene_id": "216573", - "references": [], "kit": null, "file": "data/addgene_plasmids/216573.addgene-full.gb" }, @@ -259913,7 +275676,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp7", "sequence-type": "depositor-full", "addgene_id": "168870", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -259942,7 +275708,10 @@ "plasmid_name": "pDEST-GST-FBW7 alpha", "sequence-type": "addgene-full", "addgene_id": "197456", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "att_sites": [ "attB1", @@ -259987,7 +275756,10 @@ "plasmid_name": "pHAGE-PTEN-R130*", "sequence-type": "addgene-full", "addgene_id": "116629", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -260036,7 +275808,10 @@ "plasmid_name": "pDONR221_SLC5A2", "sequence-type": "addgene-full", "addgene_id": "132241", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -260067,7 +275842,10 @@ "plasmid_name": "pVenusCfC", "sequence-type": "addgene-full", "addgene_id": "128567", - "references": [], + "references": [ + "https://doi.org/10.1177/1087057116659438", + "https://www.ncbi.nlm.nih.gov/pubmed/27455993" + ], "kit": null, "att_sites": [ "attR1", @@ -260119,7 +275897,10 @@ "plasmid_name": "pJRA104", "sequence-type": "addgene-full", "addgene_id": "209337", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -260160,7 +275941,10 @@ "plasmid_name": "pDONR221-ZNF681", "sequence-type": "depositor-full", "addgene_id": "101560", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -260191,7 +275975,10 @@ "plasmid_name": "pME-fli1b", "sequence-type": "depositor-full", "addgene_id": "49019", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "att_sites": [ "attL1" @@ -260220,7 +276007,10 @@ "plasmid_name": "MAC_N_SOX17", "sequence-type": "addgene-full", "addgene_id": "167793", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -260266,7 +276056,10 @@ "plasmid_name": "pDONR223_IRGM_WT", "sequence-type": "addgene-full", "addgene_id": "82134", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -260295,7 +276088,6 @@ "plasmid_name": "g5s pDONR", "sequence-type": "addgene-full", "addgene_id": "117450", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -260326,7 +276118,10 @@ "plasmid_name": "pENTR-2B-Nkx2-5", "sequence-type": "addgene-full", "addgene_id": "98612", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -260350,7 +276145,10 @@ "plasmid_name": "pSEM223 - [4-1] - Promoter - Pmlc-2(no_start)", "sequence-type": "addgene-full", "addgene_id": "159889", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000302", + "https://www.ncbi.nlm.nih.gov/pubmed/32908967" + ], "kit": null, "att_sites": [ "attL4", @@ -260381,7 +276179,10 @@ "plasmid_name": "NDUFV3_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176946", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -260433,7 +276234,10 @@ "plasmid_name": "pLD-puro-Cc-PRDX5E80K-VA", "sequence-type": "addgene-full", "addgene_id": "98689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "att_sites": [ "attB1", @@ -260495,7 +276299,6 @@ "plasmid_name": "pDest-633", "sequence-type": "addgene-full", "addgene_id": "161877", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -260539,7 +276342,10 @@ "plasmid_name": "BirA-Myc_N_HEN1", "sequence-type": "addgene-full", "addgene_id": "167708", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -260583,7 +276389,6 @@ "plasmid_name": "pAG416GAL10-PV_3C", "sequence-type": "addgene-full", "addgene_id": "203472", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -260632,7 +276437,6 @@ "plasmid_name": "BRAF - I208V in pENTR", "sequence-type": "addgene-full", "addgene_id": "216608", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -260662,7 +276466,10 @@ "plasmid_name": "pMuLE_ENTR_PTCH1-mTurquoise2_R4-R3", "sequence-type": "addgene-full", "addgene_id": "113864", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "att_sites": [ "attB4", @@ -260697,7 +276504,10 @@ "plasmid_name": "pDONR/zeo-MACROD1", "sequence-type": "addgene-full", "addgene_id": "172572", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attL1", @@ -260728,7 +276538,10 @@ "plasmid_name": "Tol2-LyzC-Utrophin-GFP-U6ac-Rac2 guides", "sequence-type": "addgene-full", "addgene_id": "168254", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "att_sites": [ "attB1", @@ -260771,7 +276584,6 @@ "plasmid_name": "R777-E253 Hs.RASSF10", "sequence-type": "depositor-full", "addgene_id": "70537", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -260799,7 +276611,10 @@ "plasmid_name": "pJW4.15", "sequence-type": "addgene-full", "addgene_id": "131373", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -260843,7 +276658,10 @@ "plasmid_name": "pLX307-VHL(Y98H)-3F-BirA", "sequence-type": "addgene-full", "addgene_id": "220148", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-024-01590-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38514884" + ], "kit": null, "att_sites": [ "attB1", @@ -260905,7 +276723,10 @@ "plasmid_name": "pAG306GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14284", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -260963,7 +276784,10 @@ "plasmid_name": "pDest17_hnRNPA1_YtoW", "sequence-type": "addgene-full", "addgene_id": "224253", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.04.06.535902", + "https://www.ncbi.nlm.nih.gov/pubmed/37066350" + ], "kit": null, "att_sites": [ "attB1", @@ -260998,7 +276822,10 @@ "plasmid_name": "pDONR221-SV2A_STOP", "sequence-type": "addgene-full", "addgene_id": "161423", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -261029,7 +276856,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0487-luc2", "sequence-type": "addgene-full", "addgene_id": "214638", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -261073,7 +276903,10 @@ "plasmid_name": "pT2-cryR;tmem88aP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90167", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90167.addgene-full.gb" }, @@ -261082,7 +276915,10 @@ "plasmid_name": "pDONR223-FLT4", "sequence-type": "addgene-full", "addgene_id": "23923", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -261114,7 +276950,10 @@ "plasmid_name": "pHAGE-PIK3CA-E545Q", "sequence-type": "addgene-full", "addgene_id": "116486", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -261169,7 +277008,6 @@ "plasmid_name": "pENTR-Emerald", "sequence-type": "addgene-full", "addgene_id": "139549", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -261204,7 +277042,10 @@ "plasmid_name": "GSK3A_pLX307", "sequence-type": "depositor-full", "addgene_id": "98341", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98341.depositor-full.gb" }, @@ -261213,7 +277054,9 @@ "plasmid_name": "p5E-Ui4-eSIBR", "sequence-type": "depositor-full", "addgene_id": "82586", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL4", @@ -261242,7 +277085,10 @@ "plasmid_name": "pCW57.1 Ex8 mut WT1", "sequence-type": "addgene-full", "addgene_id": "217645", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "att_sites": [ "attB1", @@ -261304,7 +277150,6 @@ "plasmid_name": "IDG_GABRA5_OE_1", "sequence-type": "addgene-full", "addgene_id": "161617", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -261363,7 +277208,10 @@ "plasmid_name": "pLenti_CMV_Puro_SFB_GNB1L_WD 6 deletion", "sequence-type": "addgene-full", "addgene_id": "224387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.07.004", + "https://www.ncbi.nlm.nih.gov/pubmed/37541219" + ], "kit": null, "att_sites": [ "attB1", @@ -261428,7 +277276,10 @@ "plasmid_name": "pDONR-IAA3_no stop", "sequence-type": "depositor-full", "addgene_id": "83863", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -261459,7 +277310,10 @@ "plasmid_name": "pHAGE-NOTCH2NL", "sequence-type": "addgene-full", "addgene_id": "116766", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -261509,7 +277363,10 @@ "plasmid_name": "pDEST-CMV GFP-LC3B WT", "sequence-type": "addgene-full", "addgene_id": "123114", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -261563,7 +277420,10 @@ "plasmid_name": "pDONR221_SLC35B4", "sequence-type": "addgene-full", "addgene_id": "132075", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -261594,7 +277454,10 @@ "plasmid_name": "pZA12", "sequence-type": "addgene-full", "addgene_id": "158490", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -261623,7 +277486,10 @@ "plasmid_name": "PTPRA-MAC", "sequence-type": "addgene-full", "addgene_id": "139632", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -261668,7 +277534,10 @@ "plasmid_name": "C121-E12: NanoLuc", "sequence-type": "addgene-full", "addgene_id": "162891", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -261700,7 +277569,10 @@ "plasmid_name": "pDONR223_ERBB2_WT", "sequence-type": "addgene-full", "addgene_id": "82300", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -261729,7 +277601,6 @@ "plasmid_name": "R777-E295 Hs.RPS6KA6", "sequence-type": "depositor-full", "addgene_id": "70579", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -261757,7 +277628,6 @@ "plasmid_name": "p5'Entry-lck-7.4kb", "sequence-type": "depositor-full", "addgene_id": "58891", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -261788,7 +277658,10 @@ "plasmid_name": "mTALEAD 16S rRNA-1139T10C", "sequence-type": "addgene-full", "addgene_id": "210838", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "att_sites": [ "attB1", @@ -261827,7 +277700,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1", "sequence-type": "addgene-full", "addgene_id": "175766", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175766.addgene-full.gb" }, @@ -261836,7 +277712,10 @@ "plasmid_name": "C453-E21: attB4-FerHp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162978", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -261864,7 +277743,10 @@ "plasmid_name": "LIIc R 1-2", "sequence-type": "depositor-full", "addgene_id": "54367", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "att_sites": [ "attR1", @@ -261896,7 +277778,10 @@ "plasmid_name": "pENTR2-L3-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141016", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL3", @@ -261928,7 +277813,10 @@ "plasmid_name": "pHAGE-PTCH1-S1203Rfs*52", "sequence-type": "addgene-full", "addgene_id": "116614", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -261982,7 +277870,6 @@ "plasmid_name": "pREP82xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79026", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -262026,7 +277913,10 @@ "plasmid_name": "pINDUCER21-puro_TAOK2-D151A", "sequence-type": "addgene-full", "addgene_id": "172980", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -262082,7 +277972,10 @@ "plasmid_name": "pcDNA5FRT/TO-Ataxin3-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113496", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -262126,7 +278019,10 @@ "plasmid_name": "pENTR-OsMIR390-B/c", "sequence-type": "depositor-full", "addgene_id": "61468", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12835", + "https://www.ncbi.nlm.nih.gov/pubmed/25809382" + ], "kit": null, "att_sites": [ "attL1", @@ -262162,7 +278058,10 @@ "plasmid_name": "pDONR223-TBK1", "sequence-type": "addgene-full", "addgene_id": "23851", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -262194,7 +278093,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RNASEL_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170604", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -262260,7 +278158,10 @@ "plasmid_name": "MAC_C_LMTK3", "sequence-type": "addgene-full", "addgene_id": "187773", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -262304,7 +278205,10 @@ "plasmid_name": "pDONR223_DPY30_WT", "sequence-type": "addgene-full", "addgene_id": "82109", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -262333,7 +278237,10 @@ "plasmid_name": "pDONR223_CPXCR1_p.S102P", "sequence-type": "addgene-full", "addgene_id": "81340", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -262365,7 +278272,10 @@ "plasmid_name": "R725-X20-566: His6-MBP-tev-Avi-Hs.LGALS3", "sequence-type": "addgene-full", "addgene_id": "159700", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.005669", + "https://www.ncbi.nlm.nih.gov/pubmed/30559287" + ], "kit": null, "att_sites": [ "attB1", @@ -262412,7 +278322,6 @@ "plasmid_name": "pAG426-GAL-Alpha-synuclein-E46K", "sequence-type": "addgene-full", "addgene_id": "181723", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -262466,7 +278375,10 @@ "plasmid_name": "pAG414GPD-CaCYP722C(pYL803)", "sequence-type": "addgene-full", "addgene_id": "178291", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -262518,7 +278430,10 @@ "plasmid_name": "pcDNA-DEST53 PINK1 N-GFP", "sequence-type": "addgene-full", "addgene_id": "13315", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0500617102", + "https://www.ncbi.nlm.nih.gov/pubmed/15824318" + ], "kit": null, "att_sites": [ "attB1", @@ -262571,7 +278486,6 @@ "plasmid_name": "R777-E065 Hs.ETS2", "sequence-type": "depositor-full", "addgene_id": "70349", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -262599,7 +278513,10 @@ "plasmid_name": "ICP8-P2A/Crimson (pSLIK4)", "sequence-type": "addgene-full", "addgene_id": "113859", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0200955", + "https://www.ncbi.nlm.nih.gov/pubmed/30110337" + ], "kit": null, "att_sites": [ "attB1", @@ -262665,7 +278582,10 @@ "plasmid_name": "pDONR221_SLC37A3", "sequence-type": "addgene-full", "addgene_id": "132107", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132107.addgene-full.gb" }, @@ -262674,7 +278594,10 @@ "plasmid_name": "pENTR/pTER shEGFP #2 (728-2)", "sequence-type": "depositor-full", "addgene_id": "17471", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -262700,7 +278623,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST PUM2", "sequence-type": "depositor-full", "addgene_id": "40292", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2010.03.009", + "https://www.ncbi.nlm.nih.gov/pubmed/20371350" + ], "kit": null, "file": "data/addgene_plasmids/40292.depositor-full.gb" }, @@ -262709,7 +278635,10 @@ "plasmid_name": "pDONR223_SMAD3_WT", "sequence-type": "addgene-full", "addgene_id": "82272", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -262738,7 +278667,10 @@ "plasmid_name": "pMuLE ENTR mCherry L5-L2", "sequence-type": "depositor-full", "addgene_id": "62184", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -262772,7 +278704,10 @@ "plasmid_name": "pQHD", "sequence-type": "depositor-full", "addgene_id": "48102", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.02296-13", + "https://www.ncbi.nlm.nih.gov/pubmed/23995928" + ], "kit": null, "att_sites": [ "attR1", @@ -262809,7 +278744,10 @@ "plasmid_name": "pAG414GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14360", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -262868,7 +278806,10 @@ "plasmid_name": "pGWB544", "sequence-type": "depositor-full", "addgene_id": "74878", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -262919,7 +278860,10 @@ "plasmid_name": "pBP-split-intein-Gal4[1-20]-N-int", "sequence-type": "addgene-full", "addgene_id": "199201", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2304730120", + "https://www.ncbi.nlm.nih.gov/pubmed/37276389" + ], "kit": null, "file": "data/addgene_plasmids/199201.addgene-full.gb" }, @@ -262928,7 +278872,10 @@ "plasmid_name": "pCAG/ATP9B(E272Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209245", - "references": [], + "references": [ + "https://doi.org/10.1002/1873-3468.13629", + "https://www.ncbi.nlm.nih.gov/pubmed/31571211" + ], "kit": null, "att_sites": [ "attB1", @@ -262973,7 +278920,10 @@ "plasmid_name": "pSC19", "sequence-type": "addgene-full", "addgene_id": "104793", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -263017,7 +278967,10 @@ "plasmid_name": "pDONR221-MFSD14A_STOP", "sequence-type": "depositor-full", "addgene_id": "161035", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -263048,7 +279001,6 @@ "plasmid_name": "p663-UBC-TurboID-V5-dsRed_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135261", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -263118,7 +279070,10 @@ "plasmid_name": "pDEST40-2XHA-Src-K298M-Y419F-Y530F", "sequence-type": "addgene-full", "addgene_id": "140320", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140320.addgene-full.gb" }, @@ -263127,7 +279082,10 @@ "plasmid_name": "pSLIK-IDH2-FLAG", "sequence-type": "depositor-full", "addgene_id": "66806", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + ], "kit": null, "att_sites": [ "attB1", @@ -263193,7 +279151,10 @@ "plasmid_name": "pDONRPEX18Gm-SceI-pheS", "sequence-type": "addgene-full", "addgene_id": "111609", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.03909-14", + "https://www.ncbi.nlm.nih.gov/pubmed/25795676" + ], "kit": null, "att_sites": [ "attP1", @@ -263233,7 +279194,10 @@ "plasmid_name": "PB-TAB-mOvol1", "sequence-type": "addgene-full", "addgene_id": "120360", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2018.12.008", + "https://www.ncbi.nlm.nih.gov/pubmed/30639212" + ], "kit": null, "att_sites": [ "attB1", @@ -263282,7 +279246,10 @@ "plasmid_name": "pDONR221_SLC22A5", "sequence-type": "addgene-full", "addgene_id": "132048", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -263313,7 +279280,6 @@ "plasmid_name": "R777-E023 Hs.CDK4", "sequence-type": "depositor-full", "addgene_id": "70307", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -263325,7 +279291,10 @@ "plasmid_name": "MAC_N_RAB5A", "sequence-type": "addgene-full", "addgene_id": "111692", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -263370,7 +279339,6 @@ "plasmid_name": "pLenti_TetOn_Hu_HEC1(WT)", "sequence-type": "addgene-full", "addgene_id": "136353", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -263429,7 +279397,10 @@ "plasmid_name": "pDL11", "sequence-type": "addgene-full", "addgene_id": "175906", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -263460,7 +279431,10 @@ "plasmid_name": "pDONR223_RHOA_p.R5Q", "sequence-type": "addgene-full", "addgene_id": "81294", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -263492,7 +279466,10 @@ "plasmid_name": "pGWB454", "sequence-type": "depositor-full", "addgene_id": "74836", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -263544,7 +279521,10 @@ "plasmid_name": "pYPQ-NF1-L2-dSpRY", "sequence-type": "addgene-full", "addgene_id": "177682", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.202100571", + "https://www.ncbi.nlm.nih.gov/pubmed/35377968" + ], "kit": null, "file": "data/addgene_plasmids/177682.addgene-full.gb" }, @@ -263553,7 +279533,10 @@ "plasmid_name": "pHAGE-JAG1-E228K", "sequence-type": "addgene-full", "addgene_id": "116420", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -263603,7 +279586,10 @@ "plasmid_name": "pLEX307-mFzd9", "sequence-type": "addgene-full", "addgene_id": "102877", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "att_sites": [ "attB1", @@ -263660,7 +279646,10 @@ "plasmid_name": "pENTR-BIF1", "sequence-type": "addgene-full", "addgene_id": "188442", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -263691,7 +279680,10 @@ "plasmid_name": "pGMCK-T38S38-750-luxAB-DAS+4", "sequence-type": "depositor-full", "addgene_id": "49518", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "att_sites": [ "attB1", @@ -263726,7 +279718,10 @@ "plasmid_name": "pHAGE-FLT1-V395I", "sequence-type": "addgene-full", "addgene_id": "116399", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -263780,7 +279775,10 @@ "plasmid_name": "pDONR221-MTCH1_STOP", "sequence-type": "addgene-full", "addgene_id": "161108", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -263811,7 +279809,10 @@ "plasmid_name": "pDONR223_PIK3R3_p.F380L", "sequence-type": "addgene-full", "addgene_id": "82764", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -263840,7 +279841,10 @@ "plasmid_name": "tetO-MEF2C", "sequence-type": "addgene-full", "addgene_id": "46031", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "att_sites": [ "attB1", @@ -263902,7 +279906,9 @@ "plasmid_name": "pMpGWB420", "sequence-type": "depositor-full", "addgene_id": "68685", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68685.depositor-full.gb" }, @@ -263911,7 +279917,10 @@ "plasmid_name": "pHDT2:GUS", "sequence-type": "addgene-full", "addgene_id": "108444", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "att_sites": [ "attB1", @@ -263951,7 +279960,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP2", "sequence-type": "addgene-full", "addgene_id": "154401", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -263981,7 +279993,10 @@ "plasmid_name": "pENT-L3-Titf-L4", "sequence-type": "addgene-full", "addgene_id": "186367", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL3", @@ -264012,7 +280027,6 @@ "plasmid_name": "R777-E267 Hs.RASSF8", "sequence-type": "depositor-full", "addgene_id": "70551", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -264040,7 +280054,10 @@ "plasmid_name": "pCW57.1-p37-WT-FLAG", "sequence-type": "addgene-full", "addgene_id": "225501", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adl6082", + "https://www.ncbi.nlm.nih.gov/pubmed/38701207" + ], "kit": null, "att_sites": [ "attR2" @@ -264093,7 +280110,10 @@ "plasmid_name": "V5-K202R-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192084", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "att_sites": [ "attB1", @@ -264144,7 +280164,10 @@ "plasmid_name": "MAC_N_CCDC93", "sequence-type": "addgene-full", "addgene_id": "209687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -264189,7 +280212,10 @@ "plasmid_name": "AdMKP-3 S159AS197A", "sequence-type": "addgene-full", "addgene_id": "131523", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mce.2012.03.025", + "https://www.ncbi.nlm.nih.gov/pubmed/22521266" + ], "kit": null, "att_sites": [ "attB1", @@ -264225,7 +280251,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp8", "sequence-type": "addgene-full", "addgene_id": "168850", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -264254,7 +280283,10 @@ "plasmid_name": "pME-mKate2-KDEL-pA", "sequence-type": "addgene-full", "addgene_id": "109546", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -264286,7 +280318,10 @@ "plasmid_name": "TFORF2986", "sequence-type": "addgene-full", "addgene_id": "144462", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -264347,7 +280382,10 @@ "plasmid_name": "DDX11-1", "sequence-type": "addgene-full", "addgene_id": "155503", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -264391,7 +280429,10 @@ "plasmid_name": "pDONR221 Nip7", "sequence-type": "depositor-full", "addgene_id": "63763", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -264422,7 +280463,6 @@ "plasmid_name": "p667-UBC-CDK11B-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189914", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -264488,7 +280528,10 @@ "plasmid_name": "pDONR223_KRAS_p.E62K", "sequence-type": "addgene-full", "addgene_id": "81656", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -264521,7 +280564,10 @@ "plasmid_name": "GNAS_pLX307", "sequence-type": "addgene-full", "addgene_id": "98339", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -264581,7 +280627,10 @@ "plasmid_name": "pDONR221-SLC37A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161273", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -264612,7 +280661,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hSFRP1-his", "sequence-type": "addgene-full", "addgene_id": "189540", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -264662,7 +280710,10 @@ "plasmid_name": "pDONR221-SLC25A20_STOP", "sequence-type": "addgene-full", "addgene_id": "161193", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -264693,7 +280744,9 @@ "plasmid_name": "pUB-spHRed", "sequence-type": "addgene-full", "addgene_id": "84734", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "att_sites": [ "attB1", @@ -264731,7 +280784,10 @@ "plasmid_name": "pYY1704", "sequence-type": "addgene-full", "addgene_id": "198421", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-022-01302-y", + "https://www.ncbi.nlm.nih.gov/pubmed/36550363" + ], "kit": null, "att_sites": [ "attB1", @@ -264780,7 +280836,10 @@ "plasmid_name": "pEBTet-SNAP-\u03b1-tubulin", "sequence-type": "addgene-full", "addgene_id": "136791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -264827,7 +280886,10 @@ "plasmid_name": "pPB-EF1a-MegaGate-HA-Blast", "sequence-type": "addgene-full", "addgene_id": "175270", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -264877,7 +280939,10 @@ "plasmid_name": "pME-minP:luc2", "sequence-type": "addgene-full", "addgene_id": "138354", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attL1", @@ -264911,7 +280976,10 @@ "plasmid_name": "pEBTet-SNAP-Cep152", "sequence-type": "addgene-full", "addgene_id": "136825", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -264959,7 +281027,10 @@ "plasmid_name": "pFRT/TO/GFP-SCAF8 (CRISPR_resistant)", "sequence-type": "addgene-full", "addgene_id": "122472", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "att_sites": [ "attB1", @@ -265006,7 +281077,10 @@ "plasmid_name": "pDONR221_SLC22A7", "sequence-type": "addgene-full", "addgene_id": "131977", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -265037,7 +281111,10 @@ "plasmid_name": "pcDNA3.2/Capsid", "sequence-type": "addgene-full", "addgene_id": "120816", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -265087,7 +281164,10 @@ "plasmid_name": "TFORF3306", "sequence-type": "addgene-full", "addgene_id": "144782", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -265147,7 +281227,10 @@ "plasmid_name": "TFORF3360", "sequence-type": "addgene-full", "addgene_id": "144836", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -265207,7 +281290,10 @@ "plasmid_name": "pHAGE-EGFR-S380Pfs*16", "sequence-type": "addgene-full", "addgene_id": "116302", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -265260,7 +281346,10 @@ "plasmid_name": "pDONR223_IRF4_WT", "sequence-type": "addgene-full", "addgene_id": "81782", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81782.addgene-full.gb" }, @@ -265269,7 +281358,10 @@ "plasmid_name": "pDONR223_CDKN1B_WT", "sequence-type": "addgene-full", "addgene_id": "81836", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -265301,7 +281393,6 @@ "plasmid_name": "R777-E001 Hs.AKT1", "sequence-type": "depositor-full", "addgene_id": "70285", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -265313,7 +281404,10 @@ "plasmid_name": "actc1b-mKate2-DysF", "sequence-type": "addgene-full", "addgene_id": "109492", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -265356,7 +281450,10 @@ "plasmid_name": "pMOS023E: Entry vector for: Peredox NADH/NAD+ sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163077", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -265391,7 +281488,10 @@ "plasmid_name": "pMDJ231 - Phsp Cas9", "sequence-type": "addgene-full", "addgene_id": "191382", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "att_sites": [ "attB1", @@ -265426,7 +281526,10 @@ "plasmid_name": "pDONR223_ZNF454_p.R376I", "sequence-type": "addgene-full", "addgene_id": "81462", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -265458,7 +281561,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF8a", "sequence-type": "depositor-full", "addgene_id": "168858", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -265487,7 +281593,10 @@ "plasmid_name": "pDONR223_ARAF_p.S214C_p.D429A", "sequence-type": "addgene-full", "addgene_id": "82904", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -265516,7 +281625,10 @@ "plasmid_name": "LA001: pMVP (L3-L2) P2A-mCherry + WPRE", "sequence-type": "addgene-full", "addgene_id": "121774", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -265554,7 +281666,10 @@ "plasmid_name": "pAFMW-Nbr[R272A,K276A]", "sequence-type": "addgene-full", "addgene_id": "188596", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -265584,7 +281699,10 @@ "plasmid_name": "pSAM2_mCherry_SRF", "sequence-type": "addgene-full", "addgene_id": "72695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -265646,7 +281764,10 @@ "plasmid_name": "TFORF3503", "sequence-type": "addgene-full", "addgene_id": "144979", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -265706,7 +281827,10 @@ "plasmid_name": "pCR8-Magneto2.0-p2A-mCherry", "sequence-type": "depositor-full", "addgene_id": "74334", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4265", + "https://www.ncbi.nlm.nih.gov/pubmed/26950006" + ], "kit": null, "att_sites": [ "attL1", @@ -265741,7 +281865,10 @@ "plasmid_name": "pLX304-IRES-Td", "sequence-type": "addgene-full", "addgene_id": "176296", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "att_sites": [ "attR1", @@ -265809,7 +281936,10 @@ "plasmid_name": "TFORF3414", "sequence-type": "addgene-full", "addgene_id": "144890", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -265869,7 +281999,10 @@ "plasmid_name": "pAAVS1-Nst-CAG-DEST", "sequence-type": "addgene-full", "addgene_id": "80489", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "att_sites": [ "attR1", @@ -265928,7 +282061,10 @@ "plasmid_name": "TFORF3248", "sequence-type": "addgene-full", "addgene_id": "144724", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -265988,7 +282124,10 @@ "plasmid_name": "actc1b-mKate2-rab14", "sequence-type": "addgene-full", "addgene_id": "109600", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -266030,7 +282169,10 @@ "plasmid_name": "pDON223 N S235F", "sequence-type": "addgene-full", "addgene_id": "180071", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -266059,7 +282201,10 @@ "plasmid_name": "pDONR223_SMAD4_p.R361H", "sequence-type": "addgene-full", "addgene_id": "81510", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -266091,7 +282236,10 @@ "plasmid_name": "pDONR223 ATG3 C264A", "sequence-type": "addgene-full", "addgene_id": "129293", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attL1", @@ -266120,7 +282268,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_YH/GG", "sequence-type": "addgene-full", "addgene_id": "187123", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -266165,7 +282316,10 @@ "plasmid_name": "pCMB-NUCr", "sequence-type": "depositor-full", "addgene_id": "61169", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -266211,7 +282365,10 @@ "plasmid_name": "pDONR223_RBM45_p.M126I", "sequence-type": "addgene-full", "addgene_id": "82759", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -266240,7 +282397,10 @@ "plasmid_name": "SUN2delCCec", "sequence-type": "addgene-full", "addgene_id": "130848", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attL1", @@ -266273,7 +282433,10 @@ "plasmid_name": "pDONR223_PPP2R1A_WT", "sequence-type": "addgene-full", "addgene_id": "81944", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -266302,7 +282465,10 @@ "plasmid_name": "pAG305GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14306", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -266360,7 +282526,10 @@ "plasmid_name": "pAB(EXPR-PYL-HDAC3-NEO)", "sequence-type": "addgene-full", "addgene_id": "114394", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "att_sites": [ "attB1", @@ -266414,7 +282583,10 @@ "plasmid_name": "pDONR221-TAF15 Stop", "sequence-type": "depositor-full", "addgene_id": "84895", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1109434108", + "https://www.ncbi.nlm.nih.gov/pubmed/22065782" + ], "kit": null, "att_sites": [ "attL1", @@ -266445,7 +282617,6 @@ "plasmid_name": "pCW57.1_V5_TurboID_FLAG_Nt", "sequence-type": "addgene-full", "addgene_id": "194072", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -266503,7 +282674,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-50", "sequence-type": "depositor-full", "addgene_id": "46656", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46656.depositor-full.gb" }, @@ -266512,7 +282686,10 @@ "plasmid_name": "pLenti-basP:fLuc-TK:rLuc", "sequence-type": "addgene-full", "addgene_id": "138369", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attB1", @@ -266574,7 +282751,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep57", "sequence-type": "addgene-full", "addgene_id": "136818", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -266620,7 +282800,10 @@ "plasmid_name": "pDONR223_MDM2_p.E421Q", "sequence-type": "addgene-full", "addgene_id": "82876", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -266649,7 +282832,6 @@ "plasmid_name": "R777-E077 Hs.EXOC6", "sequence-type": "depositor-full", "addgene_id": "70361", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -266677,7 +282859,10 @@ "plasmid_name": "pAAV2-DEST(f)", "sequence-type": "addgene-full", "addgene_id": "190226", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "att_sites": [ "attR1", @@ -266711,7 +282896,10 @@ "plasmid_name": "pDEST17-ALDH1A1", "sequence-type": "addgene-full", "addgene_id": "189749", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "att_sites": [ "attB1", @@ -266745,7 +282933,10 @@ "plasmid_name": "p6328 pHAGE-P-CMVt-N-HA-GAW-HERC2-F4", "sequence-type": "addgene-full", "addgene_id": "100138", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -266797,7 +282988,10 @@ "plasmid_name": "pLX302-PTP-SL-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87774", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "att_sites": [ "attB1", @@ -266858,7 +283052,10 @@ "plasmid_name": "pSGE_647_S2-1-eyg_dCP", "sequence-type": "depositor-full", "addgene_id": "71163", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -266891,7 +283088,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP4_nostop", "sequence-type": "addgene-full", "addgene_id": "149307", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -266920,7 +283120,10 @@ "plasmid_name": "pENTR R4-eGFP-R3", "sequence-type": "depositor-full", "addgene_id": "32312", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attR3", @@ -266955,7 +283158,10 @@ "plasmid_name": "pGWB508", "sequence-type": "depositor-full", "addgene_id": "74850", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -267003,7 +283209,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PHKG2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158186", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -267069,7 +283274,10 @@ "plasmid_name": "pAG426GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14348", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -267131,7 +283339,10 @@ "plasmid_name": "pE5n", "sequence-type": "depositor-full", "addgene_id": "17459", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -267159,7 +283370,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_DelCTerm_1-223AA", "sequence-type": "addgene-full", "addgene_id": "221488", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -267219,7 +283433,6 @@ "plasmid_name": "CMYA5tnC/pDEST26-N-FLAG", "sequence-type": "addgene-full", "addgene_id": "98130", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -267266,7 +283479,10 @@ "plasmid_name": "JP705: pMVP/SB/Neo-DEST", "sequence-type": "addgene-full", "addgene_id": "121866", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -267308,7 +283524,10 @@ "plasmid_name": "KG901: pMVP (L3-L2) HA epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121749", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -267342,7 +283561,10 @@ "plasmid_name": "pDONR221-eGFP", "sequence-type": "addgene-full", "addgene_id": "221413", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -267377,7 +283599,10 @@ "plasmid_name": "pDONR223_DNTTIP2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82939", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -267406,7 +283631,10 @@ "plasmid_name": "pHAGE-EGFR-L747_T751delLREAT", "sequence-type": "addgene-full", "addgene_id": "116270", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -267460,7 +283688,9 @@ "plasmid_name": "pME-tdTomato no stop", "sequence-type": "depositor-full", "addgene_id": "82404", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL1", @@ -267493,7 +283723,10 @@ "plasmid_name": "TFORF3468", "sequence-type": "addgene-full", "addgene_id": "144944", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -267553,7 +283786,10 @@ "plasmid_name": "TFORF3034", "sequence-type": "addgene-full", "addgene_id": "144510", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -267614,7 +283850,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP12_nostop", "sequence-type": "addgene-full", "addgene_id": "168696", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -267643,7 +283882,6 @@ "plasmid_name": "R777-E322 Hs.SPRED1-nostop", "sequence-type": "depositor-full", "addgene_id": "70606", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -267671,7 +283909,10 @@ "plasmid_name": "pHAGE-BRAF-P403Lfs*8", "sequence-type": "addgene-full", "addgene_id": "116190", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -267726,7 +283967,10 @@ "plasmid_name": "pDONR221-SLC35A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161301", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -267757,7 +284001,10 @@ "plasmid_name": "pDONR223_THEMIS_WT", "sequence-type": "addgene-full", "addgene_id": "81890", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -267789,7 +284036,10 @@ "plasmid_name": "pCFJ1209", "sequence-type": "depositor-full", "addgene_id": "44491", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attB1", @@ -267831,7 +284081,10 @@ "plasmid_name": "pDONR223_MTM1_p.R253Q", "sequence-type": "addgene-full", "addgene_id": "81724", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -267863,7 +284116,10 @@ "plasmid_name": "pENTR_Hu_Plk5(WT)", "sequence-type": "addgene-full", "addgene_id": "136329", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.00607-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21245385" + ], "kit": null, "att_sites": [ "attL1", @@ -267894,7 +284150,10 @@ "plasmid_name": "pCPP5099", "sequence-type": "addgene-full", "addgene_id": "128714", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -267925,7 +284184,10 @@ "plasmid_name": "pDONR221_SLC26A4", "sequence-type": "addgene-full", "addgene_id": "132032", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -267956,7 +284218,6 @@ "plasmid_name": "pDONR221-mis18a", "sequence-type": "addgene-full", "addgene_id": "192747", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -267987,7 +284248,10 @@ "plasmid_name": "SFRS2IP", "sequence-type": "addgene-full", "addgene_id": "156012", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -268030,7 +284294,9 @@ "plasmid_name": "pCW57.1-FOXM1c", "sequence-type": "addgene-full", "addgene_id": "68810", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26243836" + ], "kit": null, "att_sites": [ "attB1", @@ -268086,7 +284352,10 @@ "plasmid_name": "pK7WG2-mitoTAL2-orf125", "sequence-type": "addgene-full", "addgene_id": "158737", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-019-0459-z", + "https://www.ncbi.nlm.nih.gov/pubmed/31285556" + ], "kit": null, "att_sites": [ "attB1", @@ -268129,7 +284398,6 @@ "plasmid_name": "pDEST26-Nluc-hDHX58", "sequence-type": "addgene-full", "addgene_id": "197625", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -268177,7 +284445,10 @@ "plasmid_name": "pCAGIG_V5-PPP6C", "sequence-type": "depositor-full", "addgene_id": "92013", - "references": [], + "references": [ + "https://doi.org/10.1038/nature21025", + "https://www.ncbi.nlm.nih.gov/pubmed/28114302" + ], "kit": null, "att_sites": [ "attB1", @@ -268226,7 +284497,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP4", "sequence-type": "addgene-full", "addgene_id": "141258", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141258.addgene-full.gb" }, @@ -268235,7 +284509,6 @@ "plasmid_name": "pHAGE-CMV-Flag-AAK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135280", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -268288,7 +284561,10 @@ "plasmid_name": "pMuLE ENTR SFFV L5-L2", "sequence-type": "depositor-full", "addgene_id": "62098", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -268319,7 +284595,10 @@ "plasmid_name": "PLEX_313 GFP", "sequence-type": "addgene-full", "addgene_id": "184494", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abf0529", + "https://www.ncbi.nlm.nih.gov/pubmed/35298263" + ], "kit": null, "att_sites": [ "attB1", @@ -268381,7 +284660,6 @@ "plasmid_name": "IDG_CACNG1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161650", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -268440,7 +284718,10 @@ "plasmid_name": "pENTR-R4R3-mRuby-C", "sequence-type": "depositor-full", "addgene_id": "113755", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -268475,7 +284756,10 @@ "plasmid_name": "pDONR223_H2AFX_p.K134N", "sequence-type": "addgene-full", "addgene_id": "81275", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -268507,7 +284791,10 @@ "plasmid_name": "pTol2CG2-hsp70I:QFGal4-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155120", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "att_sites": [ "attB1", @@ -268552,7 +284839,10 @@ "plasmid_name": "pHAGE-CCND1", "sequence-type": "addgene-full", "addgene_id": "116721", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -268603,7 +284893,10 @@ "plasmid_name": "TOB1", "sequence-type": "addgene-full", "addgene_id": "156089", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -268646,7 +284939,10 @@ "plasmid_name": "CYFIP1.mCherry", "sequence-type": "addgene-full", "addgene_id": "122051", - "references": [], + "references": [ + "https://doi.org/10.1038/tp.2014.16", + "https://www.ncbi.nlm.nih.gov/pubmed/24667445" + ], "kit": null, "att_sites": [ "attB1", @@ -268687,7 +284983,10 @@ "plasmid_name": "MAC_C_PLRKT", "sequence-type": "addgene-full", "addgene_id": "111673", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -268732,7 +285031,10 @@ "plasmid_name": "pDestTol2pA2-blasticidin--3.5ubb:plin2-tdtomato", "sequence-type": "addgene-full", "addgene_id": "172535", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64744", + "https://www.ncbi.nlm.nih.gov/pubmed/34114952" + ], "kit": null, "file": "data/addgene_plasmids/172535.addgene-full.gb" }, @@ -268741,7 +285043,6 @@ "plasmid_name": "pENTR223 ACE2, open", "sequence-type": "addgene-full", "addgene_id": "149719", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -268770,7 +285071,10 @@ "plasmid_name": "pHAGE-PIK3CA-N1068Kfs*5", "sequence-type": "addgene-full", "addgene_id": "116515", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -268824,7 +285128,10 @@ "plasmid_name": "pMALB", "sequence-type": "addgene-full", "addgene_id": "161784", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2013.11.021", + "https://www.ncbi.nlm.nih.gov/pubmed/24388174" + ], "kit": null, "att_sites": [ "attR1", @@ -268887,7 +285194,10 @@ "plasmid_name": "pCFJ2240 - [1-2] ENTR - Fluor - ce-tagRFP-T (1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159855", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -268918,7 +285228,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST QKI", "sequence-type": "depositor-full", "addgene_id": "19891", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -268964,7 +285277,10 @@ "plasmid_name": "MAC_C_STYK1", "sequence-type": "addgene-full", "addgene_id": "187792", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -269009,7 +285325,10 @@ "plasmid_name": "pMuLE ENTR U6 n.s shRNA L1-R5", "sequence-type": "addgene-full", "addgene_id": "62135", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -269043,7 +285362,10 @@ "plasmid_name": "pDONR223_ESR1_WT", "sequence-type": "addgene-full", "addgene_id": "82208", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -269074,7 +285396,9 @@ "plasmid_name": "pMpGWB327", "sequence-type": "depositor-full", "addgene_id": "68655", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -269121,7 +285445,10 @@ "plasmid_name": "p5Edll4E1", "sequence-type": "addgene-full", "addgene_id": "90120", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -269152,7 +285479,10 @@ "plasmid_name": "pQCXIH CMV/TO DEST (w382-1)", "sequence-type": "addgene-full", "addgene_id": "17394", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -269198,7 +285528,10 @@ "plasmid_name": "pDONR221-UNC93B1_STOP", "sequence-type": "addgene-full", "addgene_id": "161464", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -269229,7 +285562,6 @@ "plasmid_name": "R777-E297 Hs.RPS6KB1", "sequence-type": "depositor-full", "addgene_id": "70581", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -269257,7 +285589,10 @@ "plasmid_name": "His8:MBP-tev-Tyr-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83391", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.14497", + "https://www.ncbi.nlm.nih.gov/pubmed/28277608" + ], "kit": null, "att_sites": [ "attB1", @@ -269296,7 +285631,10 @@ "plasmid_name": "pAG304GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14232", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -269351,7 +285689,10 @@ "plasmid_name": "GFP-PBRM1", "sequence-type": "addgene-full", "addgene_id": "65387", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -269403,7 +285744,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD8-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113477", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -269448,7 +285792,10 @@ "plasmid_name": "pDONR223 GABARAPL2 G116A", "sequence-type": "addgene-full", "addgene_id": "123087", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -269477,7 +285824,10 @@ "plasmid_name": "TFORF3509", "sequence-type": "depositor-full", "addgene_id": "144985", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -269537,7 +285887,10 @@ "plasmid_name": "pPB-cT3G-cERP2-TAF4B", "sequence-type": "addgene-full", "addgene_id": "192927", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -269584,7 +285937,9 @@ "plasmid_name": "p3E-mKate2-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "80810", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -269617,7 +285972,10 @@ "plasmid_name": "pDONR223_ACVR1B_WT", "sequence-type": "addgene-full", "addgene_id": "82293", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -269646,7 +286004,10 @@ "plasmid_name": "C232-E05: attB2r-meGFP-attB3", "sequence-type": "addgene-full", "addgene_id": "162902", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -269678,7 +286039,10 @@ "plasmid_name": "Flag-HA-USP53", "sequence-type": "addgene-full", "addgene_id": "22606", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -269727,7 +286091,10 @@ "plasmid_name": "pDONR223_BMPR1B_p.Q203D", "sequence-type": "addgene-full", "addgene_id": "82173", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -269756,7 +286123,10 @@ "plasmid_name": "pENTR-EF1adCas9VP64_T2A_MS2p65HSF1-IRESneopA", "sequence-type": "addgene-full", "addgene_id": "112921", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-018-1581-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30477585" + ], "kit": null, "att_sites": [ "attL1", @@ -269800,7 +286170,10 @@ "plasmid_name": "pUBQ10-GW", "sequence-type": "addgene-full", "addgene_id": "209370", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -269840,7 +286213,10 @@ "plasmid_name": "pDONR221_SLC5A7", "sequence-type": "addgene-full", "addgene_id": "132206", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -269871,7 +286247,10 @@ "plasmid_name": "pCFJ1149 - intron 3 smu-2 PATCs", "sequence-type": "addgene-full", "addgene_id": "161516", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -269902,7 +286281,10 @@ "plasmid_name": "pCellFree_G03 WWP1", "sequence-type": "addgene-full", "addgene_id": "67125", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "att_sites": [ "attB1", @@ -269939,7 +286321,10 @@ "plasmid_name": "R701-X24-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) Q61R", "sequence-type": "addgene-full", "addgene_id": "159573", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -269987,7 +286372,10 @@ "plasmid_name": "pAG305GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14402", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -270045,7 +286433,10 @@ "plasmid_name": "pCPP5052", "sequence-type": "addgene-full", "addgene_id": "128729", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -270068,7 +286459,10 @@ "plasmid_name": "GFP-CYLD-STOP", "sequence-type": "addgene-full", "addgene_id": "60077", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0703268104", + "https://www.ncbi.nlm.nih.gov/pubmed/17495026" + ], "kit": null, "att_sites": [ "attB1", @@ -270120,7 +286514,10 @@ "plasmid_name": "pDEST-FRT/T0-GFP-BRCA1", "sequence-type": "addgene-full", "addgene_id": "71116", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1", @@ -270166,7 +286563,10 @@ "plasmid_name": "pHAGE-RET", "sequence-type": "addgene-full", "addgene_id": "116787", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -270220,7 +286620,10 @@ "plasmid_name": "pHAGE-PIK3CA-E1037K", "sequence-type": "addgene-full", "addgene_id": "116467", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -270274,7 +286677,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) RALB", "sequence-type": "addgene-full", "addgene_id": "107506", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107506.addgene-full.gb" }, @@ -270283,7 +286689,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP12", "sequence-type": "addgene-full", "addgene_id": "141265", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -270312,7 +286721,10 @@ "plasmid_name": "pGWB550", "sequence-type": "depositor-full", "addgene_id": "74880", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -270359,7 +286771,10 @@ "plasmid_name": "pDONR223-AK2", "sequence-type": "addgene-full", "addgene_id": "23676", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -270392,7 +286807,10 @@ "plasmid_name": "pAG303GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14398", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -270450,7 +286868,10 @@ "plasmid_name": "R701-X65-527: His6-tev-Hs.CALM1(2-148)", "sequence-type": "addgene-full", "addgene_id": "159693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bpj.2019.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30846362" + ], "kit": null, "att_sites": [ "attB1", @@ -270494,7 +286915,10 @@ "plasmid_name": "pME GFP-DCX", "sequence-type": "addgene-full", "addgene_id": "105962", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "att_sites": [ "attL1", @@ -270531,7 +286955,6 @@ "plasmid_name": "pSMPUW_6.16_ M4_Ef1a-gateway-V5-SV40-Zeo", "sequence-type": "addgene-full", "addgene_id": "128452", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -270578,7 +287001,10 @@ "plasmid_name": "pDEST-CMV-N-mCherry", "sequence-type": "addgene-full", "addgene_id": "123215", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attR1", @@ -270634,7 +287060,6 @@ "plasmid_name": "pENTR-R2L3-IRES-bgeo-pA", "sequence-type": "addgene-full", "addgene_id": "139533", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -270677,7 +287102,10 @@ "plasmid_name": "hIRE1a wt", "sequence-type": "addgene-full", "addgene_id": "20744", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0001648", + "https://www.ncbi.nlm.nih.gov/pubmed/18286202" + ], "kit": null, "att_sites": [ "attB1", @@ -270739,7 +287167,10 @@ "plasmid_name": "pJH201_pE12_hyCal7-mCherry", "sequence-type": "addgene-full", "addgene_id": "160414", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -270770,7 +287201,10 @@ "plasmid_name": "pAG413GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14165", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -270832,7 +287266,10 @@ "plasmid_name": "pDONR221_SLC38A7", "sequence-type": "addgene-full", "addgene_id": "132094", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -270863,7 +287300,6 @@ "plasmid_name": "pLEX307-CTSS-G418", "sequence-type": "addgene-full", "addgene_id": "158471", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -270923,7 +287359,9 @@ "plasmid_name": "pLgw-MBD3-V5-Dam", "sequence-type": "addgene-full", "addgene_id": "55605", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24385926" + ], "kit": null, "att_sites": [ "attB1", @@ -270976,7 +287414,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-Swa1::RfA-ECFP", "sequence-type": "addgene-full", "addgene_id": "186402", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -271017,7 +287458,10 @@ "plasmid_name": "pHAGE-PIK3CA-Q546L", "sequence-type": "addgene-full", "addgene_id": "116528", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -271071,7 +287515,6 @@ "plasmid_name": "pDD376", "sequence-type": "addgene-full", "addgene_id": "137022", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -271102,7 +287545,10 @@ "plasmid_name": "MAC_N_KLF6", "sequence-type": "addgene-full", "addgene_id": "167772", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -271147,7 +287593,10 @@ "plasmid_name": "pDONR221-SLCO3A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161459", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -271178,7 +287627,10 @@ "plasmid_name": "Flag-HA-BRCC3", "sequence-type": "addgene-full", "addgene_id": "22540", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -271223,7 +287675,6 @@ "plasmid_name": "R777-E181 Hs.PIK3R6", "sequence-type": "depositor-full", "addgene_id": "70465", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -271251,7 +287702,10 @@ "plasmid_name": "pDE43-MCKq19", "sequence-type": "depositor-full", "addgene_id": "27286", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "att_sites": [ "attR3", @@ -271285,7 +287739,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0495-luc2", "sequence-type": "addgene-full", "addgene_id": "214642", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -271329,7 +287786,10 @@ "plasmid_name": "pDONR223_STAT3_WT", "sequence-type": "addgene-full", "addgene_id": "82235", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -271358,7 +287818,10 @@ "plasmid_name": "pGC451", "sequence-type": "depositor-full", "addgene_id": "19692", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attL1", @@ -271389,7 +287852,10 @@ "plasmid_name": "pMuLE ENTR CMV-hCas9 R4-R3", "sequence-type": "depositor-full", "addgene_id": "62132", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -271425,7 +287891,10 @@ "plasmid_name": "pENTR223-BNLF2a", "sequence-type": "addgene-full", "addgene_id": "195767", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL2" @@ -271452,7 +287921,10 @@ "plasmid_name": "pDONR221_SLC26A9", "sequence-type": "addgene-full", "addgene_id": "132140", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -271483,7 +287955,10 @@ "plasmid_name": "pENTR-L5-mCherry-L2", "sequence-type": "depositor-full", "addgene_id": "32416", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL2", @@ -271518,7 +287993,6 @@ "plasmid_name": "MECP2 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216592", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -271548,7 +288022,10 @@ "plasmid_name": "pENTR-L3-eSpCas9(1.1)-2A-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141051", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -271579,7 +288056,10 @@ "plasmid_name": "pHAGE-RAF1-H466R", "sequence-type": "addgene-full", "addgene_id": "116653", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -271633,7 +288113,10 @@ "plasmid_name": "pDL18", "sequence-type": "addgene-full", "addgene_id": "175895", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -271664,7 +288147,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir28-3", "sequence-type": "depositor-full", "addgene_id": "46686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -271714,7 +288200,10 @@ "plasmid_name": "pDONR223_CDKN1B_p.C29F", "sequence-type": "addgene-full", "addgene_id": "81307", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -271746,7 +288235,10 @@ "plasmid_name": "pDest-311 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161896", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -271788,7 +288280,10 @@ "plasmid_name": "MAC_N_KLF10", "sequence-type": "addgene-full", "addgene_id": "187734", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -271833,7 +288328,10 @@ "plasmid_name": "pDONR P2R-P3-EGFP", "sequence-type": "depositor-full", "addgene_id": "48349", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -271871,7 +288369,6 @@ "plasmid_name": "pAG416GALL-HIV-1_PR", "sequence-type": "addgene-full", "addgene_id": "203493", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -271918,7 +288415,10 @@ "plasmid_name": "pAG304GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14375", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -271977,7 +288477,10 @@ "plasmid_name": "TFORF3220", "sequence-type": "addgene-full", "addgene_id": "144696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -272037,7 +288540,10 @@ "plasmid_name": "pSLIK-Zeo", "sequence-type": "depositor-full", "addgene_id": "25736", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0606179103", + "https://www.ncbi.nlm.nih.gov/pubmed/16945906" + ], "kit": null, "att_sites": [ "attR1", @@ -272103,7 +288609,10 @@ "plasmid_name": "TFORF3446", "sequence-type": "addgene-full", "addgene_id": "144922", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -272163,7 +288672,10 @@ "plasmid_name": "plenti-UbcP-Myc-YWAA-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107377", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -272222,7 +288734,10 @@ "plasmid_name": "pGC238", "sequence-type": "depositor-full", "addgene_id": "19631", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -272261,7 +288776,10 @@ "plasmid_name": "PPP1CA", "sequence-type": "addgene-full", "addgene_id": "155843", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -272304,7 +288822,10 @@ "plasmid_name": "pE4c", "sequence-type": "depositor-full", "addgene_id": "17464", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -272330,7 +288851,10 @@ "plasmid_name": "pGGW_SM_BamHI", "sequence-type": "depositor-full", "addgene_id": "49315", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -272367,7 +288891,10 @@ "plasmid_name": "pDONR223_NKX2-1_DelNTerm_160-371AA", "sequence-type": "addgene-full", "addgene_id": "221475", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attL1", @@ -272408,7 +288935,10 @@ "plasmid_name": "pMMK ENTR 1 CMV EYFP Tubulin", "sequence-type": "addgene-full", "addgene_id": "206254", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL1", @@ -272440,7 +288970,10 @@ "plasmid_name": "pME-mCD8mCherry", "sequence-type": "addgene-full", "addgene_id": "170206", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-020-0703-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32895565" + ], "kit": null, "att_sites": [ "attL1", @@ -272477,7 +289010,9 @@ "plasmid_name": "pME-3xNLS-mTagBFP2-Cre (JDW 918)", "sequence-type": "addgene-full", "addgene_id": "224517", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -272512,7 +289047,10 @@ "plasmid_name": "pDONR221-SLC3A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161367", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -272544,7 +289082,10 @@ "plasmid_name": "TFORF3100", "sequence-type": "addgene-full", "addgene_id": "144576", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -272604,7 +289145,10 @@ "plasmid_name": "pAG306GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14188", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -272662,7 +289206,9 @@ "plasmid_name": "pPB-cT3G-cERP2-MYBL1", "sequence-type": "addgene-full", "addgene_id": "222547", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -272708,7 +289254,10 @@ "plasmid_name": "p{3P3-dsRed::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182168", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attR1", @@ -272755,7 +289304,10 @@ "plasmid_name": "A1-LCD-23S+23T", "sequence-type": "addgene-full", "addgene_id": "178693", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -272790,7 +289342,10 @@ "plasmid_name": "pDONR221-FOXD4L3", "sequence-type": "depositor-full", "addgene_id": "101491", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -272874,7 +289429,10 @@ "plasmid_name": "KA801: pMVP (L3-L2) HA tag + pA; CMV::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121800", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -272916,7 +289474,10 @@ "plasmid_name": "pDONR223_TBL1XR1_p.L81V", "sequence-type": "addgene-full", "addgene_id": "81439", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -272948,7 +289509,10 @@ "plasmid_name": "pGCS-N5(GST)", "sequence-type": "addgene-full", "addgene_id": "85722", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -272997,7 +289561,10 @@ "plasmid_name": "pME-mKate2-NS", "sequence-type": "addgene-full", "addgene_id": "109729", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -273030,7 +289597,10 @@ "plasmid_name": "LIIc F 5-6", "sequence-type": "depositor-full", "addgene_id": "54372", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "att_sites": [ "attR1", @@ -273062,7 +289632,10 @@ "plasmid_name": "pAC1815_pCR8-gSMN2-DN3", "sequence-type": "addgene-full", "addgene_id": "118648", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -273095,7 +289668,10 @@ "plasmid_name": "PCBP1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98362", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -273155,7 +289731,6 @@ "plasmid_name": "R777-E204 Hs.PRKAG3-nostop", "sequence-type": "depositor-full", "addgene_id": "70488", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -273183,7 +289758,10 @@ "plasmid_name": "pDONR221-SLC35E3_STOP", "sequence-type": "addgene-full", "addgene_id": "161228", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -273214,7 +289792,10 @@ "plasmid_name": "pGWB429", "sequence-type": "depositor-full", "addgene_id": "74823", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -273266,7 +289847,10 @@ "plasmid_name": "pDONR221-ZNF222", "sequence-type": "depositor-full", "addgene_id": "101622", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -273297,7 +289881,10 @@ "plasmid_name": "pGL3-MTS-G3635A-L17-Q2L7-T2176N-UGI-Puro", "sequence-type": "addgene-full", "addgene_id": "209647", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-42359-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37857619" + ], "kit": null, "file": "data/addgene_plasmids/209647.addgene-full.gb" }, @@ -273306,7 +289893,10 @@ "plasmid_name": "TFORF2963", "sequence-type": "addgene-full", "addgene_id": "144439", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -273366,7 +289956,10 @@ "plasmid_name": "pHAGE-ERBB2-V842I", "sequence-type": "addgene-full", "addgene_id": "116359", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -273420,7 +290013,6 @@ "plasmid_name": "R777-E028 Hs.CNKSR1-nostop", "sequence-type": "depositor-full", "addgene_id": "70312", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -273448,7 +290040,10 @@ "plasmid_name": "pCW-Flag-CtIP-T847E", "sequence-type": "depositor-full", "addgene_id": "71110", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1", @@ -273503,7 +290098,10 @@ "plasmid_name": "pDONR223_BRAF_p.R682W", "sequence-type": "addgene-full", "addgene_id": "82810", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -273533,7 +290131,10 @@ "plasmid_name": "pDEST-ERBB2-v2", "sequence-type": "addgene-full", "addgene_id": "154895", - "references": [], + "references": [ + "https://doi.org/10.1038/s41388-020-01604-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33420373" + ], "kit": null, "att_sites": [ "attB1", @@ -273564,7 +290165,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-PES1", "sequence-type": "depositor-full", "addgene_id": "38085", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -273610,7 +290214,10 @@ "plasmid_name": "pDONR223_FBXW7_p.I347M", "sequence-type": "addgene-full", "addgene_id": "81576", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -273642,7 +290249,10 @@ "plasmid_name": "pDe-CAS9", "sequence-type": "depositor-full", "addgene_id": "61433", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12554", + "https://www.ncbi.nlm.nih.gov/pubmed/24836556" + ], "kit": null, "att_sites": [ "attR1", @@ -273687,7 +290297,10 @@ "plasmid_name": "p3E-rab12", "sequence-type": "addgene-full", "addgene_id": "109666", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -273718,7 +290331,10 @@ "plasmid_name": "TFORF3266", "sequence-type": "addgene-full", "addgene_id": "144742", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -273778,7 +290394,6 @@ "plasmid_name": "pHAGE mCherry-Rab11A S20V", "sequence-type": "addgene-full", "addgene_id": "228036", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -273830,7 +290445,10 @@ "plasmid_name": "pAdCMV/V5-DEST-STAT3-3xFlag", "sequence-type": "addgene-full", "addgene_id": "99260", - "references": [], + "references": [ + "https://doi.org/10.1152/ajpcell.00235.2017", + "https://www.ncbi.nlm.nih.gov/pubmed/29351406" + ], "kit": null, "att_sites": [ "attB1", @@ -273867,7 +290485,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp13", "sequence-type": "addgene-full", "addgene_id": "168890", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -273896,7 +290517,10 @@ "plasmid_name": "p3E-Cltb", "sequence-type": "addgene-full", "addgene_id": "109586", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -273927,7 +290551,10 @@ "plasmid_name": "pDONR223_HTR3B_p.W95C", "sequence-type": "addgene-full", "addgene_id": "81696", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -273959,7 +290586,10 @@ "plasmid_name": "pDONR223_TRAT1_WT", "sequence-type": "addgene-full", "addgene_id": "81922", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -273991,7 +290621,10 @@ "plasmid_name": "5'-3xFLAG Mef2a+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212063", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -274032,8 +290665,8 @@ "sequence-type": "depositor-full", "addgene_id": "22515", "references": [ - "https://doi.org/10.1038/srep34365", - "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" ], "kit": null, "att_sites": [ @@ -274072,7 +290705,10 @@ "plasmid_name": "pAG416-Gal-PA50", "sequence-type": "depositor-full", "addgene_id": "84902", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "att_sites": [ "attB1", @@ -274126,7 +290762,10 @@ "plasmid_name": "MAC3-C-GFP", "sequence-type": "addgene-full", "addgene_id": "222601", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "att_sites": [ "attB1", @@ -274174,7 +290813,6 @@ "plasmid_name": "R777-E238 Hs.RASAL3-nostop", "sequence-type": "depositor-full", "addgene_id": "70522", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -274202,7 +290840,10 @@ "plasmid_name": "pENTR/D_creERt2", "sequence-type": "addgene-full", "addgene_id": "27321", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.059345", + "https://www.ncbi.nlm.nih.gov/pubmed/21138979" + ], "kit": null, "att_sites": [ "attL1", @@ -274239,7 +290880,10 @@ "plasmid_name": "pAG416GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14291", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -274301,7 +290945,10 @@ "plasmid_name": "KP401: pMVP (L5-L4) eCFP-P2A", "sequence-type": "addgene-full", "addgene_id": "121712", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -274338,7 +290985,6 @@ "plasmid_name": "pBABEpuro-CRAF_S257L", "sequence-type": "depositor-full", "addgene_id": "51125", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -274369,7 +291015,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-irf2bpl B", "sequence-type": "addgene-full", "addgene_id": "89371", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -274423,7 +291072,10 @@ "plasmid_name": "pMMK ENTR 1 HITI-2c ACTB", "sequence-type": "addgene-full", "addgene_id": "206269", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL1", @@ -274450,7 +291102,10 @@ "plasmid_name": "AAEL003378 FMRFaR", "sequence-type": "addgene-full", "addgene_id": "115382", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115382.addgene-full.gb" }, @@ -274459,7 +291114,9 @@ "plasmid_name": "pDONR221-SF3B2", "sequence-type": "addgene-full", "addgene_id": "166208", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -274490,7 +291147,10 @@ "plasmid_name": "pBGRY", "sequence-type": "depositor-full", "addgene_id": "61599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2014.07.012", + "https://www.ncbi.nlm.nih.gov/pubmed/25123314" + ], "kit": null, "att_sites": [ "attR1", @@ -274521,7 +291181,10 @@ "plasmid_name": "pHAGE-BRAF-G466E", "sequence-type": "addgene-full", "addgene_id": "116150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -274576,7 +291239,10 @@ "plasmid_name": "pDONR223_TNFRSF14_WT", "sequence-type": "addgene-full", "addgene_id": "81850", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -274608,7 +291274,10 @@ "plasmid_name": "pLenti CMV/TO GFP-Zeo DEST (719-1)", "sequence-type": "addgene-full", "addgene_id": "17431", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -274674,7 +291343,10 @@ "plasmid_name": "pDONR221-kcnk2a", "sequence-type": "addgene-full", "addgene_id": "208983", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -274705,7 +291377,10 @@ "plasmid_name": "pYPQ142-ZmUbi", "sequence-type": "addgene-full", "addgene_id": "138106", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL2", @@ -274739,7 +291414,6 @@ "plasmid_name": "pCWXPGR-pTF-Ngn2", "sequence-type": "addgene-full", "addgene_id": "114280", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -274799,7 +291473,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.P160L", "sequence-type": "addgene-full", "addgene_id": "81404", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -274831,7 +291508,10 @@ "plasmid_name": "KK501: pMVP (L3-L2) FKBP DD + polyA", "sequence-type": "addgene-full", "addgene_id": "121789", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -274865,7 +291545,10 @@ "plasmid_name": "pCMB-PERr", "sequence-type": "depositor-full", "addgene_id": "61203", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -274910,7 +291593,9 @@ "plasmid_name": "pDONR221-ELAVL2", "sequence-type": "addgene-full", "addgene_id": "166173", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -274941,7 +291626,10 @@ "plasmid_name": "TFORF3508", "sequence-type": "addgene-full", "addgene_id": "144984", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -275001,7 +291689,10 @@ "plasmid_name": "pDONR223-ZNF346", "sequence-type": "addgene-full", "addgene_id": "88193", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -275030,7 +291721,10 @@ "plasmid_name": "TFORF3154", "sequence-type": "addgene-full", "addgene_id": "144630", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -275090,7 +291784,10 @@ "plasmid_name": "pUB-Cas9", "sequence-type": "addgene-full", "addgene_id": "86556", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00039", + "https://www.ncbi.nlm.nih.gov/pubmed/28174584" + ], "kit": null, "att_sites": [ "attB1", @@ -275134,7 +291831,10 @@ "plasmid_name": "p3E-rab4a", "sequence-type": "addgene-full", "addgene_id": "109714", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -275165,7 +291865,10 @@ "plasmid_name": "pDEST 565-XERICO", "sequence-type": "addgene-full", "addgene_id": "118675", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -275210,7 +291913,10 @@ "plasmid_name": "pDONR223-MCU-E257A", "sequence-type": "depositor-full", "addgene_id": "31727", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "att_sites": [ "attL1", @@ -275239,7 +291945,10 @@ "plasmid_name": "pDONR221-SLC24A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161215", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -275270,7 +291979,10 @@ "plasmid_name": "pDONR223_PIK3CG_p.W212C", "sequence-type": "addgene-full", "addgene_id": "81630", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -275303,7 +292015,10 @@ "plasmid_name": "actc1b-mKate2-Dnm2a-DN", "sequence-type": "addgene-full", "addgene_id": "109520", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -275345,7 +292060,10 @@ "plasmid_name": "pHAGE-ERBB4-K606N", "sequence-type": "addgene-full", "addgene_id": "116364", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -275395,7 +292113,10 @@ "plasmid_name": "pEN12A-P750", "sequence-type": "depositor-full", "addgene_id": "49525", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "att_sites": [ "attL1", @@ -275422,7 +292143,10 @@ "plasmid_name": "pDONR221-SLC7A14_STOP", "sequence-type": "depositor-full", "addgene_id": "161339", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -275453,7 +292177,10 @@ "plasmid_name": "pDONR223-ZNF484", "sequence-type": "addgene-full", "addgene_id": "88047", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -275482,7 +292209,10 @@ "plasmid_name": "TFORF3374", "sequence-type": "addgene-full", "addgene_id": "144850", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -275543,7 +292273,10 @@ "plasmid_name": "pDONR221_SLC16A4", "sequence-type": "addgene-full", "addgene_id": "131911", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -275574,7 +292307,10 @@ "plasmid_name": "pCM5.47", "sequence-type": "depositor-full", "addgene_id": "17254", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -275605,7 +292341,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12Y", "sequence-type": "addgene-full", "addgene_id": "82799", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -275636,7 +292375,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep41", "sequence-type": "addgene-full", "addgene_id": "136843", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -275681,7 +292423,10 @@ "plasmid_name": "pDR-AmTrac", "sequence-type": "depositor-full", "addgene_id": "47770", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.00800", + "https://www.ncbi.nlm.nih.gov/pubmed/23840931" + ], "kit": null, "att_sites": [ "attB1", @@ -275727,7 +292472,10 @@ "plasmid_name": "pBTMcC24-DM", "sequence-type": "addgene-full", "addgene_id": "111236", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4464", + "https://www.ncbi.nlm.nih.gov/pubmed/29039417" + ], "kit": null, "att_sites": [ "attR1", @@ -275769,7 +292517,10 @@ "plasmid_name": "pLenti-CMV-Blast-DNTGFBR2-HA", "sequence-type": "addgene-full", "addgene_id": "130888", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.07.092", + "https://www.ncbi.nlm.nih.gov/pubmed/31461652" + ], "kit": null, "att_sites": [ "attB1", @@ -275830,7 +292581,6 @@ "plasmid_name": "pGP4G-cccdB", "sequence-type": "depositor-full", "addgene_id": "83876", - "references": [], "kit": null, "file": "data/addgene_plasmids/83876.depositor-full.gb" }, @@ -275839,7 +292589,10 @@ "plasmid_name": "pEN_TT 3xFLAG-XRCC6", "sequence-type": "addgene-full", "addgene_id": "192302", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -275868,7 +292621,10 @@ "plasmid_name": "pMSCV-SMYD3", "sequence-type": "addgene-full", "addgene_id": "85650", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13320", + "https://www.ncbi.nlm.nih.gov/pubmed/24847881" + ], "kit": null, "att_sites": [ "attB1", @@ -275910,7 +292666,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP14_stop", "sequence-type": "addgene-full", "addgene_id": "168719", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -275939,7 +292698,10 @@ "plasmid_name": "pMDC32-HPB", "sequence-type": "depositor-full", "addgene_id": "32078", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2008.03736.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19000159" + ], "kit": null, "att_sites": [ "attR1", @@ -275987,7 +292749,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf3a", "sequence-type": "addgene-full", "addgene_id": "158372", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -276032,7 +292797,9 @@ "plasmid_name": "p3E-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82593", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -276064,7 +292831,10 @@ "plasmid_name": "GFP-BICD2", "sequence-type": "addgene-full", "addgene_id": "164626", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164626.addgene-full.gb" }, @@ -276073,7 +292843,6 @@ "plasmid_name": "R777-E174 Hs.PIK3R2-nostop", "sequence-type": "depositor-full", "addgene_id": "70458", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -276101,7 +292870,10 @@ "plasmid_name": "C514-E24: attB5r-RU5u-V5-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162959", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -276131,7 +292903,10 @@ "plasmid_name": "Control-cx43.4-48H-pGTag", "sequence-type": "addgene-full", "addgene_id": "117818", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53968", + "https://www.ncbi.nlm.nih.gov/pubmed/32412410" + ], "kit": null, "att_sites": [ "attL3" @@ -276164,7 +292939,10 @@ "plasmid_name": "pHAGE-PTEN-S170N", "sequence-type": "addgene-full", "addgene_id": "116635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -276214,7 +292992,6 @@ "plasmid_name": "pLIX403-EBFP2-ccdB-EYFP", "sequence-type": "addgene-full", "addgene_id": "158558", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -276274,7 +293051,10 @@ "plasmid_name": "pENTR-L5-EF1_-R3", "sequence-type": "addgene-full", "addgene_id": "141037", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL5", @@ -276302,7 +293082,10 @@ "plasmid_name": "pDONR223-PRKCQ", "sequence-type": "addgene-full", "addgene_id": "23424", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -276334,7 +293117,10 @@ "plasmid_name": "pENTR-R4R3-3xmRuby-C", "sequence-type": "addgene-full", "addgene_id": "113757", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -276369,7 +293155,10 @@ "plasmid_name": "MAC3-tag-N", "sequence-type": "addgene-full", "addgene_id": "185482", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attR1", @@ -276418,7 +293207,10 @@ "plasmid_name": "pENTR4-V5-LUC (w468-1)", "sequence-type": "depositor-full", "addgene_id": "19135", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -276446,7 +293238,10 @@ "plasmid_name": "MKAKU41ec", "sequence-type": "addgene-full", "addgene_id": "131014", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "att_sites": [ "attL1", @@ -276479,7 +293274,10 @@ "plasmid_name": "MAC_C_LMTK2", "sequence-type": "addgene-full", "addgene_id": "187752", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -276524,7 +293322,10 @@ "plasmid_name": "pCMP-APr", "sequence-type": "depositor-full", "addgene_id": "61184", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -276569,7 +293370,10 @@ "plasmid_name": "pDONR223_OR2G6_p.R265K", "sequence-type": "addgene-full", "addgene_id": "81361", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -276601,7 +293405,10 @@ "plasmid_name": "pcDNA5/FRT/TO-Venus-Flag-Gateway (1124)", "sequence-type": "addgene-full", "addgene_id": "40999", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201001083", + "https://www.ncbi.nlm.nih.gov/pubmed/20733051" + ], "kit": null, "att_sites": [ "attR1", @@ -276653,7 +293460,10 @@ "plasmid_name": "Tol2-LyzC-RacFRET-U6ac-rac2 guides", "sequence-type": "addgene-full", "addgene_id": "168248", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "att_sites": [ "attB1", @@ -276693,7 +293503,9 @@ "plasmid_name": "pMpGWB117", "sequence-type": "depositor-full", "addgene_id": "68571", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -276739,7 +293551,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NI_G1397-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171727", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attL1", @@ -276775,7 +293590,6 @@ "plasmid_name": "BRAF - R558G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216614", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -276805,7 +293619,10 @@ "plasmid_name": "Active Wnt4-V5", "sequence-type": "depositor-full", "addgene_id": "43812", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43812.depositor-full.gb" }, @@ -276814,7 +293631,10 @@ "plasmid_name": "pDONR221_SLC2A2", "sequence-type": "addgene-full", "addgene_id": "132126", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -276845,7 +293665,9 @@ "plasmid_name": "pcDNA5-3xFLAG-TAF5-\u2206ex8", "sequence-type": "addgene-full", "addgene_id": "209050", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attB1", @@ -276888,7 +293710,10 @@ "plasmid_name": "pDONR223_WWTR1_WT", "sequence-type": "addgene-full", "addgene_id": "82253", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -276917,7 +293742,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0388-luc2", "sequence-type": "addgene-full", "addgene_id": "214624", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -276961,7 +293789,10 @@ "plasmid_name": "pAG305GPD-ccdB-EGFP", "sequence-type": "addgene-full", "addgene_id": "14186", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -277021,7 +293852,10 @@ "plasmid_name": "pSC32", "sequence-type": "addgene-full", "addgene_id": "104806", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -277064,7 +293898,10 @@ "plasmid_name": "pMuLE ENTR CMV eGFP R4-R3", "sequence-type": "depositor-full", "addgene_id": "62141", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -277102,7 +293939,10 @@ "plasmid_name": "pMx/ATP11C-b(E184Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209264", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258523", + "https://www.ncbi.nlm.nih.gov/pubmed/34528675" + ], "kit": null, "file": "data/addgene_plasmids/209264.addgene-full.gb" }, @@ -277111,7 +293951,6 @@ "plasmid_name": "pENTR-Hygro", "sequence-type": "addgene-full", "addgene_id": "139555", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -277143,7 +293982,6 @@ "plasmid_name": "pEN_TT luciferase-V5", "sequence-type": "addgene-full", "addgene_id": "220360", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -277173,7 +294011,6 @@ "plasmid_name": "R777-E132 Hs.MET-nostop", "sequence-type": "depositor-full", "addgene_id": "70416", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -277201,7 +294038,6 @@ "plasmid_name": "p667-UBC-GFP-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135240", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -277269,7 +294105,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-UD-KD", "sequence-type": "addgene-full", "addgene_id": "140301", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -277321,7 +294160,10 @@ "plasmid_name": "cASPG1-mRFP", "sequence-type": "addgene-full", "addgene_id": "181962", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.360", + "https://www.ncbi.nlm.nih.gov/pubmed/34877448" + ], "kit": null, "att_sites": [ "attB1", @@ -277366,7 +294208,10 @@ "plasmid_name": "pANG02", "sequence-type": "addgene-full", "addgene_id": "178084", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2021.102608", + "https://www.ncbi.nlm.nih.gov/pubmed/34801582" + ], "kit": null, "att_sites": [ "attR1", @@ -277396,7 +294241,10 @@ "plasmid_name": "768 pME mApple-CAAX", "sequence-type": "addgene-full", "addgene_id": "195961", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL1", @@ -277429,7 +294277,10 @@ "plasmid_name": "pDONR223-ZNF785", "sequence-type": "addgene-full", "addgene_id": "88459", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -277458,7 +294309,10 @@ "plasmid_name": "PA-RL-mCherry", "sequence-type": "depositor-full", "addgene_id": "78861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "att_sites": [ "attB1", @@ -277513,7 +294367,6 @@ "plasmid_name": "Hs.KRAS4a Q61L", "sequence-type": "depositor-full", "addgene_id": "83171", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -277538,7 +294391,10 @@ "plasmid_name": "pDONR221_SLC39A4", "sequence-type": "addgene-full", "addgene_id": "132069", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -277569,7 +294425,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-LC3B-G120A-GFP", "sequence-type": "addgene-full", "addgene_id": "123108", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -277622,7 +294481,6 @@ "plasmid_name": "pAM-35s-CBL10-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102402", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -277655,7 +294513,10 @@ "plasmid_name": "pAG303GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14158", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -277713,7 +294574,10 @@ "plasmid_name": "pQLinkHD-SYNZIP4", "sequence-type": "depositor-full", "addgene_id": "80660", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "att_sites": [ "attB1", @@ -277749,7 +294613,10 @@ "plasmid_name": "pDONR221-ZNF860", "sequence-type": "depositor-full", "addgene_id": "101441", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -277780,7 +294647,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aa1.2.3", "sequence-type": "addgene-full", "addgene_id": "136372", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL2", @@ -277811,7 +294681,10 @@ "plasmid_name": "pDL190", "sequence-type": "addgene-full", "addgene_id": "175927", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -277835,7 +294708,10 @@ "plasmid_name": "pLX317 SLC2A1", "sequence-type": "addgene-full", "addgene_id": "193685", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -277895,7 +294771,10 @@ "plasmid_name": "pCM5.46", "sequence-type": "depositor-full", "addgene_id": "19386", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -277926,7 +294805,6 @@ "plasmid_name": "IDG_KCNIP1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161690", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -277985,7 +294863,10 @@ "plasmid_name": "pBullet-cyt-n", "sequence-type": "depositor-full", "addgene_id": "53065", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -278022,7 +294903,10 @@ "plasmid_name": "pLenti-Lifeact EGFP", "sequence-type": "addgene-full", "addgene_id": "187686", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0069378", + "https://www.ncbi.nlm.nih.gov/pubmed/23990882" + ], "kit": null, "file": "data/addgene_plasmids/187686.addgene-full.gb" }, @@ -278031,7 +294915,10 @@ "plasmid_name": "MAC-TMPRSS11B", "sequence-type": "addgene-full", "addgene_id": "172421", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -278076,7 +294963,6 @@ "plasmid_name": "pAG416GAL10-CCHFV_OTU", "sequence-type": "addgene-full", "addgene_id": "201945", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -278125,7 +295011,10 @@ "plasmid_name": "pHAGE-FLT4-F131S", "sequence-type": "addgene-full", "addgene_id": "116401", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -278175,7 +295064,10 @@ "plasmid_name": "pMXs-hu-c-Myc-dN2", "sequence-type": "depositor-full", "addgene_id": "50774", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "att_sites": [ "attB1", @@ -278205,7 +295097,10 @@ "plasmid_name": "pENTR223-BGLF5", "sequence-type": "addgene-full", "addgene_id": "195813", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -278234,7 +295129,6 @@ "plasmid_name": "pEF 4r-GFPGUS-3r", "sequence-type": "depositor-full", "addgene_id": "20098", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -278270,7 +295164,10 @@ "plasmid_name": "Flag-HA-USP38", "sequence-type": "addgene-full", "addgene_id": "22580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -278315,7 +295212,6 @@ "plasmid_name": "pLenti6.2-Firefly-ccdB", "sequence-type": "addgene-full", "addgene_id": "87077", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -278381,7 +295277,9 @@ "plasmid_name": "pMpGWB403", "sequence-type": "depositor-full", "addgene_id": "68668", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -278430,7 +295328,10 @@ "plasmid_name": "C514-E51: attB5r-RBS-His6-MBP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162964", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -278462,7 +295363,9 @@ "plasmid_name": "pLX317-QKI", "sequence-type": "addgene-full", "addgene_id": "115441", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "att_sites": [ "attB1", @@ -278522,7 +295425,10 @@ "plasmid_name": "pDONR221_SLC4A1", "sequence-type": "addgene-full", "addgene_id": "132180", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -278553,7 +295459,10 @@ "plasmid_name": "pENTR221-GLI1", "sequence-type": "addgene-full", "addgene_id": "79497", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -278584,7 +295493,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-Zeo", "sequence-type": "addgene-full", "addgene_id": "158565", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -278646,7 +295554,10 @@ "plasmid_name": "pHAGE-PPP2R1A-P179R", "sequence-type": "addgene-full", "addgene_id": "116608", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -278697,7 +295608,10 @@ "plasmid_name": "pDONR221_SLC4A4", "sequence-type": "addgene-full", "addgene_id": "132260", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -278728,7 +295642,10 @@ "plasmid_name": "pENTR D-TOPO-C3_15", "sequence-type": "depositor-full", "addgene_id": "60262", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -278759,7 +295676,10 @@ "plasmid_name": "p8322 pDONR ATG-YAP1 S94A-Stop", "sequence-type": "addgene-full", "addgene_id": "184526", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "att_sites": [ "attL1", @@ -278788,7 +295708,10 @@ "plasmid_name": "pDONR223_ERN1_WT", "sequence-type": "addgene-full", "addgene_id": "82115", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -278817,7 +295740,10 @@ "plasmid_name": "MAC_N_TLX2", "sequence-type": "addgene-full", "addgene_id": "167806", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -278862,7 +295788,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP2", "sequence-type": "addgene-full", "addgene_id": "169377", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -278905,7 +295830,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TSSK6_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170618", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -278971,7 +295895,10 @@ "plasmid_name": "pSEM267 - pEXP(mosTI, neoR)[Pmex-5 | ceGFP(PATC, NLS) | tbb-2 3'UTR]", "sequence-type": "addgene-full", "addgene_id": "159833", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "att_sites": [ "attB1", @@ -279006,7 +295933,10 @@ "plasmid_name": "tetO-ESRRA", "sequence-type": "addgene-full", "addgene_id": "170683", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -279068,7 +295998,10 @@ "plasmid_name": "pHAGE-PIK3CD-R785W", "sequence-type": "addgene-full", "addgene_id": "116573", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -279122,7 +296055,10 @@ "plasmid_name": "pDONR223_GPR137B_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83017", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -279151,7 +296087,10 @@ "plasmid_name": "pENTR-THT", "sequence-type": "depositor-full", "addgene_id": "55790", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "att_sites": [ "attL1", @@ -279189,7 +296128,10 @@ "plasmid_name": "pHAGE-TBC1D3B-R162*", "sequence-type": "addgene-full", "addgene_id": "116693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116693.addgene-full.gb" }, @@ -279198,7 +296140,10 @@ "plasmid_name": "pENTR_L1-Turbo-YFP-NLS-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127361", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL1", @@ -279235,7 +296180,10 @@ "plasmid_name": "pDONR221-SLCO4A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161402", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -279266,7 +296214,10 @@ "plasmid_name": "pFRT/TO/FLAG/HA-DEST TNRC6A", "sequence-type": "addgene-full", "addgene_id": "19883", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -279313,7 +296264,10 @@ "plasmid_name": "pT2-cryR;dll4CE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90146", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -279361,7 +296315,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0376-luc2", "sequence-type": "addgene-full", "addgene_id": "214619", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214619.addgene-full.gb" }, @@ -279370,7 +296327,10 @@ "plasmid_name": "pENTR-L1-ESYN-R5", "sequence-type": "depositor-full", "addgene_id": "32581", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL1", @@ -279402,7 +296362,10 @@ "plasmid_name": "pDONR223-PTK2", "sequence-type": "addgene-full", "addgene_id": "23902", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -279434,7 +296397,10 @@ "plasmid_name": "p3E-APEX2-P2A-mKate2", "sequence-type": "depositor-full", "addgene_id": "67671", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attL3", @@ -279468,7 +296434,9 @@ "plasmid_name": "pMpGWB235", "sequence-type": "depositor-full", "addgene_id": "68626", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -279516,7 +296484,10 @@ "plasmid_name": "pMx/ATP10B(E210Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209259", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "att_sites": [ "attB1", @@ -279552,7 +296523,10 @@ "plasmid_name": "pDONR221-PARP11", "sequence-type": "addgene-full", "addgene_id": "184469", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "att_sites": [ "attL1", @@ -279583,7 +296557,6 @@ "plasmid_name": "pgLAP4", "sequence-type": "depositor-full", "addgene_id": "19705", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -279634,7 +296607,10 @@ "plasmid_name": "pMuLE ENTR MCS L1-L4", "sequence-type": "addgene-full", "addgene_id": "62087", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -279665,7 +296641,6 @@ "plasmid_name": "IDG_ASIC4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161636", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -279723,7 +296698,10 @@ "plasmid_name": "pYPQ290", "sequence-type": "addgene-full", "addgene_id": "129670", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -279755,7 +296733,10 @@ "plasmid_name": "KAT14-pDEST10", "sequence-type": "addgene-full", "addgene_id": "118382", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attB1", @@ -279791,7 +296772,10 @@ "plasmid_name": "pHAGE-GATA3", "sequence-type": "addgene-full", "addgene_id": "116747", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -279841,7 +296825,10 @@ "plasmid_name": "W118-1_hTGM4-Flag", "sequence-type": "addgene-full", "addgene_id": "180409", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "att_sites": [ "attB1", @@ -279904,7 +296891,6 @@ "plasmid_name": "pDONR221-hmgn6-SE", "sequence-type": "addgene-full", "addgene_id": "192721", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -279935,7 +296921,10 @@ "plasmid_name": "pPB-cT3G-cERP2-JUN", "sequence-type": "addgene-full", "addgene_id": "192895", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -279982,7 +296971,10 @@ "plasmid_name": "pDONR221_SLC25A45", "sequence-type": "addgene-full", "addgene_id": "132054", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -280013,7 +297005,10 @@ "plasmid_name": "pDONR223_MAP3K7_WT", "sequence-type": "addgene-full", "addgene_id": "82321", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -280043,7 +297038,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-2", "sequence-type": "depositor-full", "addgene_id": "46711", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46711.depositor-full.gb" }, @@ -280052,7 +297050,10 @@ "plasmid_name": "pDONR223_C19orf48_p.L70F", "sequence-type": "addgene-full", "addgene_id": "81288", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -280084,7 +297085,10 @@ "plasmid_name": "ACA8-YFPc", "sequence-type": "addgene-full", "addgene_id": "87243", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.111.192575", + "https://www.ncbi.nlm.nih.gov/pubmed/22535420" + ], "kit": null, "att_sites": [ "attB1", @@ -280117,7 +297121,10 @@ "plasmid_name": "pDestattB/CY (pCM327)", "sequence-type": "depositor-full", "addgene_id": "68341", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.23989", + "https://www.ncbi.nlm.nih.gov/pubmed/23723152" + ], "kit": null, "att_sites": [ "attR3", @@ -280165,7 +297172,10 @@ "plasmid_name": "pREPK219H", "sequence-type": "depositor-full", "addgene_id": "51492", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attB1", @@ -280207,7 +297217,10 @@ "plasmid_name": "mEos3-Rac1", "sequence-type": "addgene-full", "addgene_id": "92039", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1409667112", + "https://www.ncbi.nlm.nih.gov/pubmed/25561548" + ], "kit": null, "att_sites": [ "attB1", @@ -280252,7 +297265,10 @@ "plasmid_name": "pHAGE-FGFR3-S131L", "sequence-type": "addgene-full", "addgene_id": "116385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -280302,7 +297318,10 @@ "plasmid_name": "pGWB402", "sequence-type": "addgene-full", "addgene_id": "74796", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -280351,7 +297370,10 @@ "plasmid_name": "TFORF3229", "sequence-type": "addgene-full", "addgene_id": "144705", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -280411,7 +297433,10 @@ "plasmid_name": "actc1b-mKate2-rab32a", "sequence-type": "addgene-full", "addgene_id": "109621", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -280453,7 +297478,10 @@ "plasmid_name": "pAG415GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14170", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -280514,7 +297542,10 @@ "plasmid_name": "pDONR223_SV2C_p.G146S", "sequence-type": "addgene-full", "addgene_id": "81531", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -280546,7 +297577,10 @@ "plasmid_name": "pDONR223_KEAP1_p.S102L", "sequence-type": "addgene-full", "addgene_id": "82778", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -280575,7 +297609,10 @@ "plasmid_name": "pDONR221-SLC17A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161114", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -280606,7 +297643,6 @@ "plasmid_name": "Hs.KRAS4b Y40C", "sequence-type": "depositor-full", "addgene_id": "83159", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -280632,7 +297668,9 @@ "plasmid_name": "pME V5-mTagBFP2 (JDW 830)", "sequence-type": "addgene-full", "addgene_id": "224484", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -280666,7 +297704,6 @@ "plasmid_name": "pAM-35s-Lyk5-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102386", - "references": [], "kit": null, "file": "data/addgene_plasmids/102386.addgene-full.gb" }, @@ -280675,7 +297712,10 @@ "plasmid_name": "pDONR223 HCoV-229E S_stop", "sequence-type": "addgene-full", "addgene_id": "168763", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -280704,7 +297744,10 @@ "plasmid_name": "pENTR1A DHFR.dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134726", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "att_sites": [ "attL1", @@ -280729,7 +297772,10 @@ "plasmid_name": "ELMOD3", "sequence-type": "addgene-full", "addgene_id": "155584", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -280772,7 +297818,6 @@ "plasmid_name": "pDONR221-WT-long-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192098", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -280803,7 +297848,10 @@ "plasmid_name": "pLX317-VRK1-K179E", "sequence-type": "addgene-full", "addgene_id": "199644", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "att_sites": [ "attB1", @@ -280863,7 +297911,10 @@ "plasmid_name": "pMuLE ENTR CMV Luc2 (FF-Luciferase) R4-R3", "sequence-type": "depositor-full", "addgene_id": "62169", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -280898,7 +297949,9 @@ "plasmid_name": "pDRf1-4CL5-DsRed (JBEI-15461)", "sequence-type": "addgene-full", "addgene_id": "87935", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27871334" + ], "kit": null, "att_sites": [ "attB1", @@ -280946,7 +297999,6 @@ "plasmid_name": "p667-UBC-ADCK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189908", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -281012,7 +298064,10 @@ "plasmid_name": "pEBTetDBl-CLIP-HsSAS6", "sequence-type": "addgene-full", "addgene_id": "136839", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -281055,7 +298110,9 @@ "plasmid_name": "pUB-cHyPer2", "sequence-type": "addgene-full", "addgene_id": "84728", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "att_sites": [ "attB1", @@ -281093,7 +298150,10 @@ "plasmid_name": "pAG425GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14417", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -281156,7 +298216,10 @@ "plasmid_name": "pStart-K", "sequence-type": "addgene-full", "addgene_id": "20346", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "att_sites": [ "attL1", @@ -281183,7 +298246,9 @@ "plasmid_name": "pMpGWB105", "sequence-type": "depositor-full", "addgene_id": "68559", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -281234,7 +298299,10 @@ "plasmid_name": "pMXs-SOX10", "sequence-type": "addgene-full", "addgene_id": "134669", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199723", + "https://www.ncbi.nlm.nih.gov/pubmed/35748297" + ], "kit": null, "att_sites": [ "attB1", @@ -281262,7 +298330,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF8_nostop", "sequence-type": "addgene-full", "addgene_id": "149326", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -281291,7 +298362,10 @@ "plasmid_name": "Tol2pA2-drl:APEX2-mCherry", "sequence-type": "addgene-full", "addgene_id": "188945", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64835", + "https://www.ncbi.nlm.nih.gov/pubmed/35943143" + ], "kit": null, "att_sites": [ "attB1", @@ -281338,7 +298412,10 @@ "plasmid_name": "pEN_TT 3XFLAG-wtGATA6-3XAU1", "sequence-type": "addgene-full", "addgene_id": "72612", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "att_sites": [ "attL1", @@ -281368,7 +298445,10 @@ "plasmid_name": "pPN440", "sequence-type": "addgene-full", "addgene_id": "137874", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "att_sites": [ "attB1", @@ -281425,7 +298505,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-6", "sequence-type": "depositor-full", "addgene_id": "46693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -281476,7 +298559,10 @@ "plasmid_name": "pGFP-Rab8A", "sequence-type": "depositor-full", "addgene_id": "24898", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.053", + "https://www.ncbi.nlm.nih.gov/pubmed/17574030" + ], "kit": null, "file": "data/addgene_plasmids/24898.depositor-full.gb" }, @@ -281485,7 +298571,10 @@ "plasmid_name": "pCAG-Autobow", "sequence-type": "depositor-full", "addgene_id": "45182", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2450", + "https://www.ncbi.nlm.nih.gov/pubmed/23817127" + ], "kit": null, "att_sites": [ "attB1", @@ -281533,7 +298622,10 @@ "plasmid_name": "pMuLE (L1-L4) 6X PRE", "sequence-type": "addgene-full", "addgene_id": "206168", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "att_sites": [ "attL1", @@ -281564,7 +298656,10 @@ "plasmid_name": "JC201: pMVP/Ad/5-35-DEST", "sequence-type": "addgene-full", "addgene_id": "121847", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -281596,7 +298691,10 @@ "plasmid_name": "pDONR223_HLA-DRA_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82983", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -281625,7 +298723,10 @@ "plasmid_name": "KZ101: pMVP (L3-L2) P2A-eCFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121768", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -281663,7 +298764,10 @@ "plasmid_name": "pDONR223_FCGR3B_p.K179T", "sequence-type": "addgene-full", "addgene_id": "82918", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -281692,7 +298796,9 @@ "plasmid_name": "pDONR221-NONO", "sequence-type": "addgene-full", "addgene_id": "166192", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -281723,7 +298829,10 @@ "plasmid_name": "pBABEpuro-ARAF_S214C", "sequence-type": "depositor-full", "addgene_id": "51077", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI72763", + "https://www.ncbi.nlm.nih.gov/pubmed/24569458" + ], "kit": null, "att_sites": [ "attB1", @@ -281754,7 +298863,10 @@ "plasmid_name": "TFORF3489", "sequence-type": "addgene-full", "addgene_id": "144965", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -281814,7 +298926,10 @@ "plasmid_name": "pMuLE ENTR U6 stuffer sgRNA scaffold L1-R5", "sequence-type": "depositor-full", "addgene_id": "62127", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -281851,7 +298966,10 @@ "plasmid_name": "pSAM2_mCherry_Nkx2.5", "sequence-type": "addgene-full", "addgene_id": "72689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -281913,7 +299031,6 @@ "plasmid_name": "R777-E186 Hs.PLXNB1-nostop", "sequence-type": "depositor-full", "addgene_id": "70470", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -281925,7 +299042,10 @@ "plasmid_name": "pEN_TTmiRC2_3xflag_NRF2(RR)", "sequence-type": "addgene-full", "addgene_id": "136522", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136522.addgene-full.gb" }, @@ -281934,7 +299054,10 @@ "plasmid_name": "pDONR221-SLC41A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161320", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -281965,7 +299088,10 @@ "plasmid_name": "Tet-myr-CSK-GFP", "sequence-type": "depositor-full", "addgene_id": "83470", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201501025", + "https://www.ncbi.nlm.nih.gov/pubmed/26216901" + ], "kit": null, "att_sites": [ "attB1", @@ -282037,7 +299163,10 @@ "plasmid_name": "pDONR223_ERBB2_p.T182I", "sequence-type": "addgene-full", "addgene_id": "81705", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -282069,7 +299198,10 @@ "plasmid_name": "JDW 837 (pCS2-V5-mScarlet-I-hsKRAS4A-G12V)", "sequence-type": "addgene-full", "addgene_id": "156410", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -282113,7 +299245,10 @@ "plasmid_name": "TFORF3262", "sequence-type": "addgene-full", "addgene_id": "144738", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -282173,7 +299308,10 @@ "plasmid_name": "pTALdNC-AAVS1_T1", "sequence-type": "addgene-full", "addgene_id": "80495", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "att_sites": [ "attL1", @@ -282200,7 +299338,10 @@ "plasmid_name": "pDONR221-SLC22A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161129", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -282231,7 +299372,10 @@ "plasmid_name": "pUPRT::DHFR-D", "sequence-type": "depositor-full", "addgene_id": "58528", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01114-14", + "https://www.ncbi.nlm.nih.gov/pubmed/24825012" + ], "kit": null, "att_sites": [ "attB1", @@ -282264,7 +299408,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND F405G", "sequence-type": "addgene-full", "addgene_id": "169973", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -282295,7 +299442,10 @@ "plasmid_name": "pDONR223-ZNF540", "sequence-type": "addgene-full", "addgene_id": "87993", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL2" @@ -282322,7 +299472,10 @@ "plasmid_name": "YAF2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98383", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -282382,7 +299535,10 @@ "plasmid_name": "pDONR-SUMO1", "sequence-type": "addgene-full", "addgene_id": "114388", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-017-18168-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29269788" + ], "kit": null, "att_sites": [ "attL1", @@ -282413,7 +299569,6 @@ "plasmid_name": "p5E-mitfa2.1", "sequence-type": "depositor-full", "addgene_id": "81234", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -282444,7 +299599,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF6", "sequence-type": "addgene-full", "addgene_id": "154420", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -282474,7 +299632,10 @@ "plasmid_name": "pDONR223_RBM10_WT", "sequence-type": "addgene-full", "addgene_id": "81958", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -282505,7 +299666,10 @@ "plasmid_name": "p3E-EGFP", "sequence-type": "addgene-full", "addgene_id": "140877", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -282540,7 +299704,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L3L2", "sequence-type": "depositor-full", "addgene_id": "113740", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -282574,7 +299741,10 @@ "plasmid_name": "pDONR221-SLC25A41_STOP", "sequence-type": "depositor-full", "addgene_id": "161172", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -282605,7 +299775,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-mir-40", "sequence-type": "depositor-full", "addgene_id": "46739", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -282646,7 +299819,10 @@ "plasmid_name": "pAG423GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14269", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -282707,7 +299883,10 @@ "plasmid_name": "pT3-EF1aH-TAZ S89A", "sequence-type": "addgene-full", "addgene_id": "179910", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jhep.2021.08.021", + "https://www.ncbi.nlm.nih.gov/pubmed/34464659" + ], "kit": null, "att_sites": [ "attB1", @@ -282749,7 +299928,10 @@ "plasmid_name": "35S-GAL4BD-GWY/pAM", "sequence-type": "addgene-full", "addgene_id": "201233", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16234", + "https://www.ncbi.nlm.nih.gov/pubmed/37323061" + ], "kit": null, "att_sites": [ "attR1", @@ -282784,7 +299966,10 @@ "plasmid_name": "p3E-EHD1b-dEH", "sequence-type": "addgene-full", "addgene_id": "109567", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -282815,7 +300000,10 @@ "plasmid_name": "TFORF2967", "sequence-type": "addgene-full", "addgene_id": "144443", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -282875,7 +300063,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.I35S", "sequence-type": "addgene-full", "addgene_id": "81677", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -282908,7 +300099,10 @@ "plasmid_name": "pENTR221-H1-sgGFP1-7SK-sgCas9", "sequence-type": "addgene-full", "addgene_id": "87908", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "att_sites": [ "attL1", @@ -282942,7 +300136,10 @@ "plasmid_name": "5'-3xFLAG Chtop-exon_siResist minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212082", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -282982,7 +300179,10 @@ "plasmid_name": "pDONR221-SLC35E2A_STOP", "sequence-type": "addgene-full", "addgene_id": "161252", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -283013,7 +300213,6 @@ "plasmid_name": "pSCM167-Venus-VF-hADAM10(aa455-654)", "sequence-type": "addgene-full", "addgene_id": "189561", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -283069,7 +300268,10 @@ "plasmid_name": "pDONR223_DNMT3A_p.Q485H", "sequence-type": "addgene-full", "addgene_id": "81597", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -283102,7 +300304,10 @@ "plasmid_name": "pEBTet-SNAP-Cep290", "sequence-type": "addgene-full", "addgene_id": "136804", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136804.addgene-full.gb" }, @@ -283111,7 +300316,6 @@ "plasmid_name": "pLenti6.3/NS2B", "sequence-type": "addgene-full", "addgene_id": "120837", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -283170,7 +300374,10 @@ "plasmid_name": "p5E-smyhc1", "sequence-type": "addgene-full", "addgene_id": "126748", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL4", @@ -283201,7 +300408,10 @@ "plasmid_name": "p3E-rab2a", "sequence-type": "addgene-full", "addgene_id": "109687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -283232,7 +300442,10 @@ "plasmid_name": "pDONR221_SLC12A6", "sequence-type": "addgene-full", "addgene_id": "131956", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -283263,7 +300476,10 @@ "plasmid_name": "pHAGE-EPHA3-R750L", "sequence-type": "addgene-full", "addgene_id": "116323", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -283313,7 +300529,10 @@ "plasmid_name": "TFORF3341", "sequence-type": "addgene-full", "addgene_id": "144817", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -283373,7 +300592,10 @@ "plasmid_name": "pDONR223_DCAF4L2_WT", "sequence-type": "addgene-full", "addgene_id": "81817", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -283405,7 +300627,10 @@ "plasmid_name": "pDONR221-SLC6A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161386", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -283436,7 +300661,6 @@ "plasmid_name": "pDONR223 LC3Flux (HaloTag7-mGFP-LC3-STOP)", "sequence-type": "addgene-full", "addgene_id": "215004", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -283471,7 +300695,10 @@ "plasmid_name": "pMOS013: mito-roGFP2-Grx1 glutathione redox sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163056", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -283535,7 +300762,10 @@ "plasmid_name": "p3E-Rab19", "sequence-type": "addgene-full", "addgene_id": "109753", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -283566,7 +300796,6 @@ "plasmid_name": "pFRT-TODestRFP_RNAseH1", "sequence-type": "addgene-full", "addgene_id": "65785", - "references": [], "kit": null, "att_sites": [ "attB2" @@ -283608,7 +300837,10 @@ "plasmid_name": "TFORF3201", "sequence-type": "addgene-full", "addgene_id": "144677", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -283668,7 +300900,10 @@ "plasmid_name": "pDONR221_MFSD8", "sequence-type": "addgene-full", "addgene_id": "131882", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -283699,7 +300934,10 @@ "plasmid_name": "plenti-UBC-HA-gate-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107396", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attR1", @@ -283762,7 +301000,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_K100A", "sequence-type": "depositor-full", "addgene_id": "65663", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -283807,7 +301048,10 @@ "plasmid_name": "pBSWt1-Dest", "sequence-type": "depositor-full", "addgene_id": "59764", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.24153", + "https://www.ncbi.nlm.nih.gov/pubmed/24924516" + ], "kit": null, "att_sites": [ "attR1", @@ -283852,7 +301096,10 @@ "plasmid_name": "pDONR221-SLC17A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161066", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -283883,7 +301130,10 @@ "plasmid_name": "TFORF3514", "sequence-type": "depositor-full", "addgene_id": "144990", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -283943,7 +301193,10 @@ "plasmid_name": "pDONR223_IDH2_p.A416V", "sequence-type": "addgene-full", "addgene_id": "81443", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -283975,7 +301228,10 @@ "plasmid_name": "pDEST17-hTRPT1-iso1", "sequence-type": "addgene-full", "addgene_id": "184239", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac711", + "https://www.ncbi.nlm.nih.gov/pubmed/36018800" + ], "kit": null, "att_sites": [ "attB1", @@ -284009,7 +301265,10 @@ "plasmid_name": "pDEST-FRT/TO-3xFLAG-REV7", "sequence-type": "addgene-full", "addgene_id": "114127", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "att_sites": [ "attB1", @@ -284052,7 +301311,10 @@ "plasmid_name": "pLX-hPGK_NKX2-1", "sequence-type": "addgene-full", "addgene_id": "221494", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -284111,7 +301373,10 @@ "plasmid_name": "pDONR223_MAPK7_WT", "sequence-type": "addgene-full", "addgene_id": "82925", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -284140,7 +301405,6 @@ "plasmid_name": "R777-E310 Hs.SHC2-nostop", "sequence-type": "depositor-full", "addgene_id": "70594", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -284168,7 +301432,10 @@ "plasmid_name": "pAG426GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14227", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -284231,7 +301498,10 @@ "plasmid_name": "KG802: pMVP (L3-L2) V5 epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121755", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -284265,7 +301535,10 @@ "plasmid_name": "Hygro-iNGN3", "sequence-type": "depositor-full", "addgene_id": "75340", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2016.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/27133796" + ], "kit": null, "att_sites": [ "attB1", @@ -284315,7 +301588,10 @@ "plasmid_name": "pINDgw Cbx1 V5 EcoDam", "sequence-type": "depositor-full", "addgene_id": "59203", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "att_sites": [ "attB1", @@ -284362,7 +301638,10 @@ "plasmid_name": "TFORF3482", "sequence-type": "addgene-full", "addgene_id": "144958", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -284422,7 +301701,10 @@ "plasmid_name": "pBi2FC-N-MPK5-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216136", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attB1", @@ -284472,7 +301754,10 @@ "plasmid_name": "pFRT/TO/FLAG/HA-DEST TNRC6B", "sequence-type": "depositor-full", "addgene_id": "19884", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -284517,7 +301802,10 @@ "plasmid_name": "pLEX307-Bat-CoV-HKU9-3CL", "sequence-type": "addgene-full", "addgene_id": "160284", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -284577,7 +301865,10 @@ "plasmid_name": "pDONR223_ACVR1B_WT", "sequence-type": "addgene-full", "addgene_id": "81738", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -284609,7 +301900,10 @@ "plasmid_name": "pInducer20-iCreb5(HA)", "sequence-type": "addgene-full", "addgene_id": "195023", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "att_sites": [ "attB1", @@ -284661,7 +301955,10 @@ "plasmid_name": "A1-LCD-4D", "sequence-type": "addgene-full", "addgene_id": "178672", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -284696,7 +301993,10 @@ "plasmid_name": "p{Mhc-F4-678-DsRed::KD-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182189", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -284736,7 +302036,10 @@ "plasmid_name": "A1-LCD WT", "sequence-type": "addgene-full", "addgene_id": "169713", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "att_sites": [ "attB1", @@ -284771,7 +302074,9 @@ "plasmid_name": "pMpGWB135", "sequence-type": "depositor-full", "addgene_id": "68589", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -284819,7 +302124,9 @@ "plasmid_name": "pENTR CMVie-Lifeact-iRFP670 L1-R5", "sequence-type": "addgene-full", "addgene_id": "84390", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "att_sites": [ "attL1", @@ -284856,7 +302163,10 @@ "plasmid_name": "pCellFree_G03 CYP3A4", "sequence-type": "addgene-full", "addgene_id": "67104", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "att_sites": [ "attB2" @@ -284891,7 +302201,10 @@ "plasmid_name": "R989-X32-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) Q61R", "sequence-type": "addgene-full", "addgene_id": "159552", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -284938,7 +302251,10 @@ "plasmid_name": "p8203 MSCV-neo C-V5 16E7", "sequence-type": "addgene-full", "addgene_id": "193976", - "references": [], + "references": [ + "https://doi.org/10.1128/jvi.01326-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36342298" + ], "kit": null, "att_sites": [ "attB1", @@ -284983,7 +302299,10 @@ "plasmid_name": "pHAGE-CDK6__HEPACAM2", "sequence-type": "addgene-full", "addgene_id": "116812", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -285034,7 +302353,10 @@ "plasmid_name": "pCPP5588", "sequence-type": "addgene-full", "addgene_id": "128708", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -285065,7 +302387,10 @@ "plasmid_name": "pHAGE-OXA1L-P58S", "sequence-type": "addgene-full", "addgene_id": "116446", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -285120,7 +302445,6 @@ "plasmid_name": "pFRT-TODestFLAGHA_HuD", "sequence-type": "depositor-full", "addgene_id": "65757", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -285165,7 +302489,10 @@ "plasmid_name": "pDONR221 NLRP1 FIIND (F1079M-L1373)", "sequence-type": "addgene-full", "addgene_id": "166831", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -285196,7 +302523,6 @@ "plasmid_name": "p663-UBC-MTS-TurboID-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214457", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -285260,7 +302586,10 @@ "plasmid_name": "pDONR223_HIST1H1E_p.A60D", "sequence-type": "addgene-full", "addgene_id": "81269", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -285292,7 +302621,10 @@ "plasmid_name": "pRU292", "sequence-type": "addgene-full", "addgene_id": "167687", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -285337,7 +302669,10 @@ "plasmid_name": "pENTR1A-NTAP-A (w322-1)", "sequence-type": "depositor-full", "addgene_id": "17402", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -285365,7 +302700,10 @@ "plasmid_name": "pME turquoise2", "sequence-type": "addgene-full", "addgene_id": "135207", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13967", + "https://www.ncbi.nlm.nih.gov/pubmed/25470057" + ], "kit": null, "att_sites": [ "attL1", @@ -285400,7 +302738,10 @@ "plasmid_name": "pZmUBQ:Mla1", "sequence-type": "addgene-full", "addgene_id": "132355", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0502-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31666804" + ], "kit": null, "file": "data/addgene_plasmids/132355.addgene-full.gb" }, @@ -285409,7 +302750,10 @@ "plasmid_name": "pCM1.151", "sequence-type": "depositor-full", "addgene_id": "21386", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21386.depositor-full.gb" }, @@ -285418,7 +302762,10 @@ "plasmid_name": "pLX311-Cas9", "sequence-type": "addgene-full", "addgene_id": "118018", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-018-0204-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30224644" + ], "kit": null, "att_sites": [ "attB1", @@ -285480,7 +302827,10 @@ "plasmid_name": "pDEST-Tol2-PA2-CMV-AB-mCh", "sequence-type": "addgene-full", "addgene_id": "160435", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.3856", + "https://www.ncbi.nlm.nih.gov/pubmed/33659494" + ], "kit": null, "file": "data/addgene_plasmids/160435.addgene-full.gb" }, @@ -285489,7 +302839,10 @@ "plasmid_name": "WPXL SOX10 gRNA", "sequence-type": "addgene-full", "addgene_id": "101923", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-017-0002-y", + "https://www.ncbi.nlm.nih.gov/pubmed/29203910" + ], "kit": null, "att_sites": [ "attB1", @@ -285542,7 +302895,10 @@ "plasmid_name": "pEZYflag", "sequence-type": "addgene-full", "addgene_id": "18700", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "att_sites": [ "attR1", @@ -285592,7 +302948,6 @@ "plasmid_name": "pLEX307-ACE2-G418", "sequence-type": "addgene-full", "addgene_id": "158450", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -285652,7 +303007,10 @@ "plasmid_name": "pHAGE-PIK3CA-M1004I", "sequence-type": "addgene-full", "addgene_id": "116509", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116509.addgene-full.gb" }, @@ -285661,7 +303019,10 @@ "plasmid_name": "pWZL Neo Myr Flag NTRK3", "sequence-type": "addgene-full", "addgene_id": "20551", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -285702,7 +303063,10 @@ "plasmid_name": "MAC_N_ETV4", "sequence-type": "addgene-full", "addgene_id": "167753", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -285747,7 +303111,6 @@ "plasmid_name": "Hs.HRAS C186S", "sequence-type": "depositor-full", "addgene_id": "83189", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -285773,7 +303136,10 @@ "plasmid_name": "pCFJ2440 - [1-2] ENTR - Fluor - ce-GFP(PATCs(900bp), no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159849", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -285804,7 +303170,10 @@ "plasmid_name": "CYYR1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176986", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -285856,7 +303225,6 @@ "plasmid_name": "R777-E329 Hs.SPRY2", "sequence-type": "depositor-full", "addgene_id": "70613", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -285884,7 +303252,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF9b", "sequence-type": "addgene-full", "addgene_id": "169396", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -285926,7 +303293,10 @@ "plasmid_name": "pLenti PGK mKate2-OGT K842M (Puro)", "sequence-type": "addgene-full", "addgene_id": "154291", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154291.addgene-full.gb" }, @@ -285935,7 +303305,10 @@ "plasmid_name": "pXL-BacII-CAG-mCherry", "sequence-type": "addgene-full", "addgene_id": "170519", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.4105", + "https://www.ncbi.nlm.nih.gov/pubmed/34458399" + ], "kit": null, "att_sites": [ "attB1", @@ -285984,7 +303357,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0538-luc2", "sequence-type": "addgene-full", "addgene_id": "214663", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -286029,7 +303405,10 @@ "plasmid_name": "pDONR223_IRS1_WT", "sequence-type": "addgene-full", "addgene_id": "82214", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -286059,7 +303438,9 @@ "plasmid_name": "Shim_MetRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202650", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "att_sites": [ "attB1", @@ -286098,7 +303479,10 @@ "plasmid_name": "pDONR221_SLC7A13", "sequence-type": "addgene-full", "addgene_id": "132161", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -286129,7 +303513,10 @@ "plasmid_name": "pAAV-TRE3G-tdTomato", "sequence-type": "addgene-full", "addgene_id": "194644", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-022-01223-1", + "https://www.ncbi.nlm.nih.gov/pubmed/36564546" + ], "kit": null, "att_sites": [ "attB1", @@ -286168,7 +303555,10 @@ "plasmid_name": "pHAGE-RHOA-E40Q", "sequence-type": "addgene-full", "addgene_id": "116672", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -286219,7 +303609,10 @@ "plasmid_name": "pDONR223-ZNF175", "sequence-type": "addgene-full", "addgene_id": "88551", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -286248,7 +303641,10 @@ "plasmid_name": "pGC188", "sequence-type": "depositor-full", "addgene_id": "19619", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attP3", @@ -286284,7 +303680,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MARK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170582", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -286350,7 +303745,10 @@ "plasmid_name": "pDONR221_SLC1A1", "sequence-type": "depositor-full", "addgene_id": "131878", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -286381,7 +303779,10 @@ "plasmid_name": "pGWB502-omega", "sequence-type": "depositor-full", "addgene_id": "74845", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -286428,7 +303829,10 @@ "plasmid_name": "pSGE_720_S2-1_CGCG-to-ETS21C", "sequence-type": "depositor-full", "addgene_id": "71176", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -286461,7 +303865,10 @@ "plasmid_name": "pDONR223_CCNG1_p.E167K", "sequence-type": "addgene-full", "addgene_id": "81326", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -286493,7 +303900,10 @@ "plasmid_name": "pENTR L1-20XUAS-L4", "sequence-type": "depositor-full", "addgene_id": "32307", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attL1", @@ -286527,7 +303937,6 @@ "plasmid_name": "IDG_KCNMB3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161703", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -286586,7 +303995,10 @@ "plasmid_name": "pHAGE-PIK3R1-G376R", "sequence-type": "addgene-full", "addgene_id": "116592", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -286637,7 +304049,6 @@ "plasmid_name": "R777-E090 Hs.FGFR4-nostop", "sequence-type": "depositor-full", "addgene_id": "70374", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -286666,7 +304077,10 @@ "plasmid_name": "pEntry Tshld(FKBP F36V)-GFP", "sequence-type": "depositor-full", "addgene_id": "53260", - "references": [], + "references": [ + "https://doi.org/10.1002/cbic.201400006", + "https://www.ncbi.nlm.nih.gov/pubmed/24615791" + ], "kit": null, "att_sites": [ "attL1", @@ -286700,7 +304114,10 @@ "plasmid_name": "pCK029 exorh:EGFP", "sequence-type": "addgene-full", "addgene_id": "195980", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attB1", @@ -286745,7 +304162,10 @@ "plasmid_name": "pDONR221_SLC23A1", "sequence-type": "addgene-full", "addgene_id": "132013", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -286776,7 +304196,10 @@ "plasmid_name": "pENTR221-TAZ CA", "sequence-type": "addgene-full", "addgene_id": "79504", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -286808,7 +304231,10 @@ "plasmid_name": "pCPP6534", "sequence-type": "addgene-full", "addgene_id": "128735", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.04.037", + "https://www.ncbi.nlm.nih.gov/pubmed/29742421" + ], "kit": null, "att_sites": [ "attR1", @@ -286843,7 +304269,10 @@ "plasmid_name": "pCFJ601 - Peft-3 Mos1 transposase", "sequence-type": "addgene-full", "addgene_id": "34874", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attB1", @@ -286878,7 +304307,10 @@ "plasmid_name": "pg-HIF-1alpha-EGFP", "sequence-type": "addgene-full", "addgene_id": "87204", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M113.500405", + "https://www.ncbi.nlm.nih.gov/pubmed/24394419" + ], "kit": null, "att_sites": [ "attB1", @@ -286920,7 +304352,10 @@ "plasmid_name": "pDONR221 Rsa4", "sequence-type": "depositor-full", "addgene_id": "63776", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -286951,7 +304386,10 @@ "plasmid_name": "PB-CT3G-CERP2-MG-IRES2-mTagBFP2", "sequence-type": "addgene-full", "addgene_id": "175509", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -287000,7 +304438,10 @@ "plasmid_name": "pSGE_770_sn-EcR_dCP", "sequence-type": "depositor-full", "addgene_id": "71221", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -287033,7 +304474,10 @@ "plasmid_name": "pDONR223_STAT3_p.Y705F", "sequence-type": "addgene-full", "addgene_id": "82086", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -287065,7 +304509,10 @@ "plasmid_name": "3xFLAG-FKBP-LRRK2", "sequence-type": "addgene-full", "addgene_id": "193584", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2205492119", + "https://www.ncbi.nlm.nih.gov/pubmed/36256825" + ], "kit": null, "att_sites": [ "attB1", @@ -287111,7 +304558,6 @@ "plasmid_name": "R777-E260 Hs.RASSF4-nostop", "sequence-type": "depositor-full", "addgene_id": "70544", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -287139,7 +304585,6 @@ "plasmid_name": "IDG_PKD1L2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161671", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -287198,7 +304643,9 @@ "plasmid_name": "pMpGWB425", "sequence-type": "depositor-full", "addgene_id": "68690", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -287249,7 +304696,10 @@ "plasmid_name": "pDONR223 GABARAP no-stop", "sequence-type": "addgene-full", "addgene_id": "123209", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123209.addgene-full.gb" }, @@ -287258,7 +304708,10 @@ "plasmid_name": "pDONR223-AXL", "sequence-type": "addgene-full", "addgene_id": "23945", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -287290,7 +304743,10 @@ "plasmid_name": "pHAGE-TGFBR2-I218V", "sequence-type": "addgene-full", "addgene_id": "116700", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -287341,7 +304797,10 @@ "plasmid_name": "pME-Lifeact-mEos2-NS", "sequence-type": "addgene-full", "addgene_id": "115549", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -287374,7 +304833,10 @@ "plasmid_name": "pDONR221_SLC34A2", "sequence-type": "addgene-full", "addgene_id": "132088", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -287405,7 +304867,10 @@ "plasmid_name": "pLX311-GFP-MEKDD", "sequence-type": "addgene-full", "addgene_id": "194882", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02898-w", + "https://www.ncbi.nlm.nih.gov/pubmed/36991492" + ], "kit": null, "att_sites": [ "attB1", @@ -287466,7 +304931,10 @@ "plasmid_name": "pYPQ159", "sequence-type": "depositor-full", "addgene_id": "69308", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL1", @@ -287501,7 +304969,10 @@ "plasmid_name": "pJH53_pE12_hyCal2", "sequence-type": "addgene-full", "addgene_id": "160408", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -287532,7 +305003,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term SMN2", "sequence-type": "addgene-full", "addgene_id": "187587", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -287576,7 +305050,10 @@ "plasmid_name": "pYPQ266", "sequence-type": "addgene-full", "addgene_id": "164713", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -287613,7 +305090,10 @@ "plasmid_name": "pDEST-DHFR F[3]-C (LEU2)", "sequence-type": "addgene-full", "addgene_id": "177796", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac045", + "https://www.ncbi.nlm.nih.gov/pubmed/35137167" + ], "kit": null, "att_sites": [ "attR1", @@ -287663,7 +305143,10 @@ "plasmid_name": "pHAGE-PIK3CA-R115L", "sequence-type": "addgene-full", "addgene_id": "116534", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -287717,7 +305200,10 @@ "plasmid_name": "pDONR223-NTRK1", "sequence-type": "addgene-full", "addgene_id": "23891", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -287749,7 +305235,10 @@ "plasmid_name": "pCFJ2089 - [1-2] ENTR - Tag - SNAP(PATC, no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159874", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -287780,7 +305269,10 @@ "plasmid_name": "pDONR223_HERPUD2_p.R285Q", "sequence-type": "addgene-full", "addgene_id": "81380", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -287812,7 +305304,9 @@ "plasmid_name": "pNR-DEST", "sequence-type": "addgene-full", "addgene_id": "90101", - "references": [], + "references": [ + "https://doi.org/10.7287/peerj.preprints.2907v1" + ], "kit": null, "att_sites": [ "attR1", @@ -287854,7 +305348,10 @@ "plasmid_name": "pDONR201-Eps8L2_544-715", "sequence-type": "addgene-full", "addgene_id": "196532", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attL1", @@ -287877,7 +305374,10 @@ "plasmid_name": "pDONR223_MAPK8_WT", "sequence-type": "addgene-full", "addgene_id": "82229", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -287906,7 +305406,10 @@ "plasmid_name": "pDONR221-NIPAL2_STOP", "sequence-type": "addgene-full", "addgene_id": "161445", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -287937,7 +305440,10 @@ "plasmid_name": "pLenti PA-mCit-GW", "sequence-type": "addgene-full", "addgene_id": "113456", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113456.addgene-full.gb" }, @@ -287946,7 +305452,10 @@ "plasmid_name": "pPB-cT3G-cERP2-WT1", "sequence-type": "addgene-full", "addgene_id": "192906", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -287993,7 +305502,10 @@ "plasmid_name": "pTO_Snf7_LAP", "sequence-type": "addgene-full", "addgene_id": "101851", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3559", + "https://www.ncbi.nlm.nih.gov/pubmed/28604678" + ], "kit": null, "file": "data/addgene_plasmids/101851.addgene-full.gb" }, @@ -288002,7 +305514,10 @@ "plasmid_name": "pENTR-L1-CAMKII(0.4)-L4", "sequence-type": "depositor-full", "addgene_id": "32579", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL1", @@ -288033,7 +305548,10 @@ "plasmid_name": "C413-E26: attB4-SV40p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162923", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -288045,7 +305563,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 55-376)", "sequence-type": "addgene-full", "addgene_id": "119313", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -288097,7 +305618,10 @@ "plasmid_name": "pDL3", "sequence-type": "addgene-full", "addgene_id": "175889", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -288128,7 +305652,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS4A", "sequence-type": "addgene-full", "addgene_id": "145356", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -288163,7 +305690,10 @@ "plasmid_name": "pKH118_keima-YIPF4", "sequence-type": "addgene-full", "addgene_id": "214971", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "att_sites": [ "attB1", @@ -288214,7 +305744,10 @@ "plasmid_name": "pTORKm43GWR", "sequence-type": "addgene-full", "addgene_id": "112900", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01516-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31575765" + ], "kit": null, "att_sites": [ "attR3", @@ -288261,7 +305794,6 @@ "plasmid_name": "pDONR221-K40R-short-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "195400", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -288292,7 +305824,10 @@ "plasmid_name": "pDONR223_PER1_WT", "sequence-type": "addgene-full", "addgene_id": "82152", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -288321,7 +305856,6 @@ "plasmid_name": "R777-E006 Hs.AKT3-nostop", "sequence-type": "depositor-full", "addgene_id": "70290", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -288349,7 +305883,10 @@ "plasmid_name": "pBABEpuro-ERBB2", "sequence-type": "addgene-full", "addgene_id": "40978", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1203201109", + "https://www.ncbi.nlm.nih.gov/pubmed/22908275" + ], "kit": null, "att_sites": [ "attB1", @@ -288381,7 +305918,10 @@ "plasmid_name": "pUBQ10-HALO-GW", "sequence-type": "addgene-full", "addgene_id": "209351", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -288422,7 +305962,10 @@ "plasmid_name": "p667-UBC-ZNF746-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207820", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -288487,7 +306030,10 @@ "plasmid_name": "pDONR221_SLC47A1", "sequence-type": "addgene-full", "addgene_id": "132227", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -288518,7 +306064,6 @@ "plasmid_name": "pENTR221 LRRK2 wt", "sequence-type": "depositor-full", "addgene_id": "39529", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -288549,7 +306094,10 @@ "plasmid_name": "C232-E30: attB2r-mRuby3-attB3", "sequence-type": "addgene-full", "addgene_id": "162907", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -288577,7 +306125,10 @@ "plasmid_name": "pDONR223_CDK2_WT", "sequence-type": "addgene-full", "addgene_id": "82296", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -288606,7 +306157,10 @@ "plasmid_name": "EHD2-mCherry", "sequence-type": "depositor-full", "addgene_id": "45933", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2012.98", + "https://www.ncbi.nlm.nih.gov/pubmed/22505029" + ], "kit": null, "att_sites": [ "attB1", @@ -288647,7 +306201,10 @@ "plasmid_name": "pDONR223 GABARAP G116", "sequence-type": "addgene-full", "addgene_id": "123082", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -288676,7 +306233,10 @@ "plasmid_name": "pPB-cT3G-cERP2-ZFPM2", "sequence-type": "addgene-full", "addgene_id": "192922", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -288721,7 +306281,10 @@ "plasmid_name": "pMXs-gw", "sequence-type": "addgene-full", "addgene_id": "18656", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.07.024", + "https://www.ncbi.nlm.nih.gov/pubmed/16904174" + ], "kit": null, "att_sites": [ "attR1", @@ -288754,7 +306317,9 @@ "plasmid_name": "pMpGWB204", "sequence-type": "depositor-full", "addgene_id": "68595", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -288802,7 +306367,10 @@ "plasmid_name": "pDONR221_SLC46A2", "sequence-type": "addgene-full", "addgene_id": "132203", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -288833,7 +306401,10 @@ "plasmid_name": "Flag-HA-USP42", "sequence-type": "addgene-full", "addgene_id": "22603", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -288882,7 +306453,6 @@ "plasmid_name": "R777-E357 Hs.VAV1", "sequence-type": "depositor-full", "addgene_id": "70641", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -288910,7 +306480,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.S33A_S37A_T41A_T45A", "sequence-type": "addgene-full", "addgene_id": "82176", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -288940,7 +306513,10 @@ "plasmid_name": "pPB-R1R2_EF1adCas9VP64_T2A_MS2p65HSF1-IRESbsdpA", "sequence-type": "addgene-full", "addgene_id": "112924", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-018-1581-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30477585" + ], "kit": null, "att_sites": [ "attB1", @@ -288997,7 +306573,10 @@ "plasmid_name": "pCFJ2334 - [1-2] ENTR - Fluor - ce-GFP(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159850", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -289030,7 +306609,10 @@ "plasmid_name": "MAC_C_EPHB2", "sequence-type": "addgene-full", "addgene_id": "187797", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -289075,7 +306657,10 @@ "plasmid_name": "pRATIO3267", "sequence-type": "addgene-full", "addgene_id": "141312", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -289125,7 +306710,10 @@ "plasmid_name": "pDONR221_UNC93B1", "sequence-type": "addgene-full", "addgene_id": "132298", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -289156,7 +306744,6 @@ "plasmid_name": "R777-E042 Hs.DUSP5-nostop", "sequence-type": "depositor-full", "addgene_id": "70326", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -289184,7 +306771,10 @@ "plasmid_name": "pHAGE-PIK3CA-M1043I", "sequence-type": "addgene-full", "addgene_id": "116510", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -289233,7 +306823,10 @@ "plasmid_name": "pDONR221_SLC43A1", "sequence-type": "addgene-full", "addgene_id": "132178", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -289264,7 +306857,10 @@ "plasmid_name": "PRPF4-1", "sequence-type": "addgene-full", "addgene_id": "156158", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -289307,7 +306903,9 @@ "plasmid_name": "Shim_AsnRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202649", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "att_sites": [ "attB1", @@ -289346,7 +306944,10 @@ "plasmid_name": "pBp-FGFR3c-WT", "sequence-type": "addgene-full", "addgene_id": "45711", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-12-3950", + "https://www.ncbi.nlm.nih.gov/pubmed/23786770" + ], "kit": null, "att_sites": [ "attB1", @@ -289378,7 +306979,10 @@ "plasmid_name": "pMEdll4P1gfp", "sequence-type": "addgene-full", "addgene_id": "90125", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL1", @@ -289416,8 +307020,8 @@ "sequence-type": "addgene-full", "addgene_id": "22578", "references": [ - "https://doi.org/10.1038/nn.4085", - "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" ], "kit": null, "att_sites": [ @@ -289463,7 +307067,10 @@ "plasmid_name": "pDONR221-NPC1_STOP", "sequence-type": "addgene-full", "addgene_id": "161461", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -289494,7 +307101,10 @@ "plasmid_name": "pGWB423", "sequence-type": "depositor-full", "addgene_id": "74817", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -289546,7 +307156,10 @@ "plasmid_name": "pTW096", "sequence-type": "addgene-full", "addgene_id": "115939", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115939.addgene-full.gb" }, @@ -289555,7 +307168,6 @@ "plasmid_name": "IDG_PLLP_OE_1", "sequence-type": "addgene-full", "addgene_id": "161655", - "references": [], "kit": null, "att_sites": [ "attB2" @@ -289612,7 +307224,10 @@ "plasmid_name": "pDONR223_KLRC2_p.G174R", "sequence-type": "addgene-full", "addgene_id": "81270", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -289644,7 +307259,10 @@ "plasmid_name": "pEN-L1-K2-L2", "sequence-type": "depositor-full", "addgene_id": "80684", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms12202", + "https://www.ncbi.nlm.nih.gov/pubmed/27447739" + ], "kit": null, "att_sites": [ "attB2", @@ -289669,7 +307287,10 @@ "plasmid_name": "MAC_C_SFXN1", "sequence-type": "addgene-full", "addgene_id": "111676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -289714,7 +307335,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MAST3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198007", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -289780,7 +307400,10 @@ "plasmid_name": "pHAGE-CDK4", "sequence-type": "addgene-full", "addgene_id": "116724", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -289830,7 +307453,6 @@ "plasmid_name": "pLEX307-ACE2-blast", "sequence-type": "addgene-full", "addgene_id": "158449", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -289889,7 +307511,10 @@ "plasmid_name": "MX2_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53942", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "att_sites": [ "attB1", @@ -289928,7 +307553,10 @@ "plasmid_name": "MSCV-N LMP1", "sequence-type": "addgene-full", "addgene_id": "37962", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "att_sites": [ "attB1" @@ -289971,7 +307599,10 @@ "plasmid_name": "pCPP5238", "sequence-type": "addgene-full", "addgene_id": "128711", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -290002,7 +307633,10 @@ "plasmid_name": "pDONR221_SLC23A3", "sequence-type": "addgene-full", "addgene_id": "132037", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -290033,7 +307667,6 @@ "plasmid_name": "pDONR221-brwd1", "sequence-type": "addgene-full", "addgene_id": "192742", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -290064,7 +307697,6 @@ "plasmid_name": "R777-E084 Hs.FGFR1-nostop", "sequence-type": "depositor-full", "addgene_id": "70368", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -290093,7 +307725,9 @@ "plasmid_name": "pENTR CMVie-Lifeact-mRuby2 L1-R5", "sequence-type": "addgene-full", "addgene_id": "84389", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30263951" + ], "kit": null, "att_sites": [ "attL1", @@ -290130,7 +307764,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP3 Cys857Ala", "sequence-type": "addgene-full", "addgene_id": "154027", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -290154,7 +307791,10 @@ "plasmid_name": "pME_GGWDest+", "sequence-type": "depositor-full", "addgene_id": "49321", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -290199,7 +307839,10 @@ "plasmid_name": "PB-TAG-ERP2", "sequence-type": "depositor-full", "addgene_id": "80479", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "att_sites": [ "attR1", @@ -290261,7 +307904,10 @@ "plasmid_name": "pDONR221 Ub-NLRP1 L1215", "sequence-type": "addgene-full", "addgene_id": "166828", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -290293,7 +307939,10 @@ "plasmid_name": "pGWB517", "sequence-type": "depositor-full", "addgene_id": "74859", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -290341,7 +307990,10 @@ "plasmid_name": "pAG423GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14341", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -290404,7 +308056,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag3_nostop", "sequence-type": "addgene-full", "addgene_id": "153175", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -290435,7 +308090,6 @@ "plasmid_name": "pCM3.11", "sequence-type": "depositor-full", "addgene_id": "19605", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -290458,7 +308112,10 @@ "plasmid_name": "pDL7", "sequence-type": "addgene-full", "addgene_id": "175890", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -290489,7 +308146,10 @@ "plasmid_name": "pUC-DEST-R1R4", "sequence-type": "addgene-full", "addgene_id": "141054", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR1", @@ -290528,7 +308188,10 @@ "plasmid_name": "pTO_CHMP2B_LAP", "sequence-type": "addgene-full", "addgene_id": "101848", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3559", + "https://www.ncbi.nlm.nih.gov/pubmed/28604678" + ], "kit": null, "att_sites": [ "attB1", @@ -290576,7 +308239,10 @@ "plasmid_name": "pHAGE-RAF1-N161K", "sequence-type": "addgene-full", "addgene_id": "116656", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -290630,7 +308296,6 @@ "plasmid_name": "p3E_he1a:ECFP", "sequence-type": "addgene-full", "addgene_id": "113880", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -290668,7 +308333,10 @@ "plasmid_name": "pDest-894 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161893", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -290711,7 +308379,10 @@ "plasmid_name": "pDONR223_HRAS_p.Q61L", "sequence-type": "addgene-full", "addgene_id": "81302", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -290743,7 +308414,10 @@ "plasmid_name": "IFNGR2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176939", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -290795,7 +308469,6 @@ "plasmid_name": "pAG416GALL-SARS-CoV-2_3CL", "sequence-type": "addgene-full", "addgene_id": "203496", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -290842,7 +308515,10 @@ "plasmid_name": "pDONR223_TP53_p.C275F", "sequence-type": "addgene-full", "addgene_id": "81399", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -290875,7 +308551,6 @@ "plasmid_name": "pENTR223 TMPRSS2, closed", "sequence-type": "addgene-full", "addgene_id": "149721", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -290904,7 +308579,10 @@ "plasmid_name": "pLX302 MX1-V5 puro", "sequence-type": "addgene-full", "addgene_id": "158640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attB1", @@ -290965,7 +308643,10 @@ "plasmid_name": "pCellFree_G07", "sequence-type": "depositor-full", "addgene_id": "67141", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "att_sites": [ "attR1" @@ -291005,7 +308686,10 @@ "plasmid_name": "pMH-HA", "sequence-type": "addgene-full", "addgene_id": "101767", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "att_sites": [ "attR1", @@ -291055,7 +308739,10 @@ "plasmid_name": "pDONR221_SLC35E4", "sequence-type": "addgene-full", "addgene_id": "132145", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -291087,7 +308774,6 @@ "plasmid_name": "R777-E274 Hs.RCE1-nostop", "sequence-type": "depositor-full", "addgene_id": "70558", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -291116,7 +308802,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(WT)-IRES-Neo", "sequence-type": "addgene-full", "addgene_id": "128663", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128663.addgene-full.gb" }, @@ -291125,7 +308814,6 @@ "plasmid_name": "MECP2 - G195S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216597", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -291155,7 +308843,10 @@ "plasmid_name": "Flag-HA-EIF3S3", "sequence-type": "addgene-full", "addgene_id": "22545", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -291200,7 +308891,10 @@ "plasmid_name": "pDONR223_MAPK9_WT", "sequence-type": "addgene-full", "addgene_id": "82230", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -291229,7 +308923,10 @@ "plasmid_name": "pGL4_EGR1p-BC0131-luc2", "sequence-type": "addgene-full", "addgene_id": "214647", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -291272,7 +308969,10 @@ "plasmid_name": "p5Elmo2E1", "sequence-type": "addgene-full", "addgene_id": "90118", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -291303,7 +309003,10 @@ "plasmid_name": "pDONR223 GABARAPL1 no-stop", "sequence-type": "addgene-full", "addgene_id": "123210", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123210.addgene-full.gb" }, @@ -291312,7 +309015,6 @@ "plasmid_name": "pSMPUW_7.1_M2_hcSyn-gateway-V5", "sequence-type": "addgene-full", "addgene_id": "128457", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -291355,7 +309057,10 @@ "plasmid_name": "pME-QFGal4-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155118", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "att_sites": [ "attL1", @@ -291391,7 +309096,10 @@ "plasmid_name": "pENTR Bmi1-C", "sequence-type": "depositor-full", "addgene_id": "30511", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2011.144", + "https://www.ncbi.nlm.nih.gov/pubmed/21552206" + ], "kit": null, "att_sites": [ "attL1", @@ -291422,7 +309130,6 @@ "plasmid_name": "pDest-Tol2 (Chien)-Tol2-Isl2b:GFP:polyA", "sequence-type": "addgene-full", "addgene_id": "105648", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -291467,7 +309174,10 @@ "plasmid_name": "BirA*-HA-NES", "sequence-type": "addgene-full", "addgene_id": "214473", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E23-06-0255", + "https://www.ncbi.nlm.nih.gov/pubmed/38117590" + ], "kit": null, "att_sites": [ "attB1", @@ -291531,7 +309241,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp9", "sequence-type": "depositor-full", "addgene_id": "168851", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -291560,7 +309273,10 @@ "plasmid_name": "p2R3a-3AT", "sequence-type": "depositor-full", "addgene_id": "71273", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL3", @@ -291596,7 +309312,6 @@ "plasmid_name": "IDG_KCNIP4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161668", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -291655,7 +309370,10 @@ "plasmid_name": "p414GPD-3xFLAG-RBM28 L351P", "sequence-type": "addgene-full", "addgene_id": "169266", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2017777118", + "https://www.ncbi.nlm.nih.gov/pubmed/33941690" + ], "kit": null, "att_sites": [ "attB1", @@ -291706,7 +309424,10 @@ "plasmid_name": "FLS2-YFPc", "sequence-type": "addgene-full", "addgene_id": "87166", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.111.192575", + "https://www.ncbi.nlm.nih.gov/pubmed/22535420" + ], "kit": null, "att_sites": [ "attB1", @@ -291739,7 +309460,10 @@ "plasmid_name": "pDN0606 (pDEST-DHFR F[3] N-term,HygR)", "sequence-type": "addgene-full", "addgene_id": "210488", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "att_sites": [ "attR1", @@ -291792,7 +309516,10 @@ "plasmid_name": "pJH198_pE12_hyCal2-eGFP", "sequence-type": "addgene-full", "addgene_id": "160411", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -291827,7 +309554,6 @@ "plasmid_name": "pLEX307-TMPRSS4-G418", "sequence-type": "addgene-full", "addgene_id": "158474", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -291888,7 +309614,10 @@ "plasmid_name": "pHAGE-BRAF", "sequence-type": "addgene-full", "addgene_id": "116719", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116719.addgene-full.gb" }, @@ -291897,7 +309626,10 @@ "plasmid_name": "p3E-APEX2 (GC rich)", "sequence-type": "addgene-full", "addgene_id": "115550", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -291928,7 +309660,10 @@ "plasmid_name": "pDONR221_SLC2A10", "sequence-type": "addgene-full", "addgene_id": "132091", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -291959,7 +309694,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::RfA", "sequence-type": "addgene-full", "addgene_id": "186407", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -292003,7 +309741,10 @@ "plasmid_name": "pHAGE-RBPMS__NTRK3", "sequence-type": "addgene-full", "addgene_id": "116836", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -292054,7 +309795,10 @@ "plasmid_name": "pDONR221-FOXQ1", "sequence-type": "addgene-full", "addgene_id": "101628", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -292085,7 +309829,10 @@ "plasmid_name": "pLEX307 ASC", "sequence-type": "addgene-full", "addgene_id": "163977", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-20320-y", + "https://www.ncbi.nlm.nih.gov/pubmed/33420033" + ], "kit": null, "att_sites": [ "attB1", @@ -292144,7 +309891,10 @@ "plasmid_name": "pHAGE-PTPN11", "sequence-type": "addgene-full", "addgene_id": "116782", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -292198,7 +309948,10 @@ "plasmid_name": "R702-X38-635: His6-Hs.NF1opt (1-2839) isoform 1", "sequence-type": "addgene-full", "addgene_id": "159576", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA119.010934", + "https://www.ncbi.nlm.nih.gov/pubmed/31836666" + ], "kit": null, "att_sites": [ "attB1", @@ -292234,7 +309987,10 @@ "plasmid_name": "R726-M01-892: His6-Halotag-tev-Hs.RAF1(52-131)", "sequence-type": "addgene-full", "addgene_id": "159696", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.005669", + "https://www.ncbi.nlm.nih.gov/pubmed/30559287" + ], "kit": null, "att_sites": [ "attB1", @@ -292282,7 +310038,6 @@ "plasmid_name": "R777-E232 Hs.RASA3-nostop", "sequence-type": "depositor-full", "addgene_id": "70516", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -292310,7 +310065,10 @@ "plasmid_name": "pDEST-SHmOCR", "sequence-type": "addgene-full", "addgene_id": "206874", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkae635", + "https://www.ncbi.nlm.nih.gov/pubmed/39036966" + ], "kit": null, "att_sites": [ "attR1", @@ -292355,7 +310113,10 @@ "plasmid_name": "hsp70:mKate2-NWASP-CA", "sequence-type": "addgene-full", "addgene_id": "105967", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "att_sites": [ "attB1", @@ -292396,7 +310157,9 @@ "plasmid_name": "p5E-acta2", "sequence-type": "depositor-full", "addgene_id": "78686", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24594685" + ], "kit": null, "att_sites": [ "attL4" @@ -292425,7 +310188,10 @@ "plasmid_name": "pHAGE-TEX264\u0394LIR-GFP", "sequence-type": "addgene-full", "addgene_id": "201926", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "att_sites": [ "attB1", @@ -292480,7 +310246,10 @@ "plasmid_name": "pHAGE-PIK3CA-D350N", "sequence-type": "addgene-full", "addgene_id": "116462", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -292534,7 +310303,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP6", "sequence-type": "addgene-full", "addgene_id": "141260", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -292563,7 +310335,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) PHLDB1", "sequence-type": "addgene-full", "addgene_id": "107503", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB1", @@ -292625,7 +310400,10 @@ "plasmid_name": "pDONR221 NLRP1 A54T", "sequence-type": "addgene-full", "addgene_id": "166815", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -292658,7 +310436,10 @@ "plasmid_name": "pDONR221-Sen1", "sequence-type": "addgene-full", "addgene_id": "99994", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attL1", @@ -292689,7 +310470,10 @@ "plasmid_name": "ph3p", "sequence-type": "depositor-full", "addgene_id": "22521", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "att_sites": [ "attB2" @@ -292721,7 +310505,10 @@ "plasmid_name": "p8195 MSCV-P C-FlagHA 6E7 R77S", "sequence-type": "addgene-full", "addgene_id": "163309", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "att_sites": [ "attB1", @@ -292767,7 +310554,10 @@ "plasmid_name": "pVHD", "sequence-type": "depositor-full", "addgene_id": "61303", - "references": [], + "references": [ + "https://doi.org/10.1038/srep06453", + "https://www.ncbi.nlm.nih.gov/pubmed/25262659" + ], "kit": null, "att_sites": [ "attR1", @@ -292802,7 +310592,10 @@ "plasmid_name": "pAFMW-Nbr[K187A]", "sequence-type": "addgene-full", "addgene_id": "188593", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -292832,7 +310625,10 @@ "plasmid_name": "pHAGE-EGFR-E967A", "sequence-type": "addgene-full", "addgene_id": "116248", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -292882,7 +310678,10 @@ "plasmid_name": "pEntry_HCoV-229E-Envelope", "sequence-type": "depositor-full", "addgene_id": "168965", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -292911,7 +310710,10 @@ "plasmid_name": "pSAM2_mCherry_Gata4", "sequence-type": "addgene-full", "addgene_id": "72690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -292973,7 +310775,10 @@ "plasmid_name": "pDONR223_ARAF_p.S214F", "sequence-type": "addgene-full", "addgene_id": "82901", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -293002,7 +310807,6 @@ "plasmid_name": "pDONR221-ACE2 receptor 19-615", "sequence-type": "addgene-full", "addgene_id": "167012", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -293033,7 +310837,10 @@ "plasmid_name": "LC801: pMVP (L3-L2) eGFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121771", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -293071,7 +310878,10 @@ "plasmid_name": "pDONR221-ZNF682", "sequence-type": "depositor-full", "addgene_id": "101475", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -293102,7 +310912,6 @@ "plasmid_name": "pCWXPGR-pTF-NeuroD1", "sequence-type": "addgene-full", "addgene_id": "114278", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -293162,7 +310971,10 @@ "plasmid_name": "pENTR-JNKKTRmRuby2", "sequence-type": "depositor-full", "addgene_id": "59148", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attL1", @@ -293188,7 +311000,10 @@ "plasmid_name": "pJPL3[flp-6p::cmk-1::GFP]", "sequence-type": "addgene-full", "addgene_id": "124613", - "references": [], + "references": [ + "https://doi.org/10.1523/JNEUROSCI.1611-17.2018", + "https://www.ncbi.nlm.nih.gov/pubmed/29875264" + ], "kit": null, "att_sites": [ "attB1", @@ -293223,7 +311038,6 @@ "plasmid_name": "Hs.KRAS4b G13C", "sequence-type": "depositor-full", "addgene_id": "83145", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -293249,7 +311063,10 @@ "plasmid_name": "TFORF3052", "sequence-type": "addgene-full", "addgene_id": "144528", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -293309,7 +311126,10 @@ "plasmid_name": "pDONR221-SLC35A5_STOP", "sequence-type": "depositor-full", "addgene_id": "161277", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -293340,7 +311160,10 @@ "plasmid_name": "pHAGE-BRAF-T599Ffs*13", "sequence-type": "addgene-full", "addgene_id": "116133", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -293395,7 +311218,10 @@ "plasmid_name": "pMOS014E: Entry vector for: Grx1-roGFP2 glutathione redox sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163072", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -293430,7 +311256,10 @@ "plasmid_name": "actc1b-mKate2-jph1a", "sequence-type": "addgene-full", "addgene_id": "109497", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -293472,7 +311301,10 @@ "plasmid_name": "pET15-UbE2D1", "sequence-type": "addgene-full", "addgene_id": "15782", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "att_sites": [ "attB1", @@ -293504,7 +311336,10 @@ "plasmid_name": "pMXs-NKX2.2", "sequence-type": "addgene-full", "addgene_id": "134670", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199723", + "https://www.ncbi.nlm.nih.gov/pubmed/35748297" + ], "kit": null, "att_sites": [ "attB1", @@ -293532,7 +311367,10 @@ "plasmid_name": "pPA-RL-GW", "sequence-type": "depositor-full", "addgene_id": "78855", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "att_sites": [ "attR1", @@ -293589,7 +311427,10 @@ "plasmid_name": "pDONR223_SLC2A3_WT", "sequence-type": "addgene-full", "addgene_id": "81787", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -293621,7 +311462,10 @@ "plasmid_name": "pPB-MPP8-\u2206ARD_Flag2-Blast", "sequence-type": "addgene-full", "addgene_id": "175041", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-23308-4", + "https://www.ncbi.nlm.nih.gov/pubmed/34031396" + ], "kit": null, "file": "data/addgene_plasmids/175041.addgene-full.gb" }, @@ -293630,7 +311474,10 @@ "plasmid_name": "pAWH-IRP", "sequence-type": "addgene-full", "addgene_id": "133896", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attB1", @@ -293674,7 +311521,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1)", "sequence-type": "addgene-full", "addgene_id": "17452", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -293741,7 +311591,10 @@ "plasmid_name": "pDONR223_NFKBIA_WT", "sequence-type": "addgene-full", "addgene_id": "81833", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -293773,7 +311626,10 @@ "plasmid_name": "pDONR221-SLC16A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161042", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -293804,7 +311660,10 @@ "plasmid_name": "p53 (dominant negative R175H mutant)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64638", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attB1", @@ -293864,7 +311723,10 @@ "plasmid_name": "Lenti-6XPRE-GFP", "sequence-type": "addgene-full", "addgene_id": "206171", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "att_sites": [ "attB1", @@ -293926,7 +311788,10 @@ "plasmid_name": "pDONR223_CHD2_p.E287Q", "sequence-type": "addgene-full", "addgene_id": "81467", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -293958,7 +311823,6 @@ "plasmid_name": "pEF 3-YFP-2", "sequence-type": "depositor-full", "addgene_id": "20106", - "references": [], "kit": null, "att_sites": [ "attL2", @@ -293994,7 +311858,10 @@ "plasmid_name": "pLenti-PGK-Neo-PIP-FUCCI", "sequence-type": "addgene-full", "addgene_id": "118616", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "att_sites": [ "attB1", @@ -294065,7 +311932,10 @@ "plasmid_name": "TFORF3177", "sequence-type": "addgene-full", "addgene_id": "144653", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -294125,7 +311995,6 @@ "plasmid_name": "R777-E138 Hs.MTOR-nostop", "sequence-type": "depositor-full", "addgene_id": "70422", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -294137,7 +312006,10 @@ "plasmid_name": "pAG424GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14391", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -294200,7 +312072,10 @@ "plasmid_name": "pDONR223_VHL_p.V130F", "sequence-type": "addgene-full", "addgene_id": "81653", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -294232,7 +312107,6 @@ "plasmid_name": "p667-UBC-SCYL1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189911", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -294297,7 +312171,9 @@ "plasmid_name": "pDEST17-NUDT5", "sequence-type": "addgene-full", "addgene_id": "219955", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-4644671/v1" + ], "kit": null, "att_sites": [ "attB1", @@ -294331,7 +312207,10 @@ "plasmid_name": "pDONR221-SLC35D3_STOP", "sequence-type": "addgene-full", "addgene_id": "161276", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -294362,7 +312241,10 @@ "plasmid_name": "TFORF2991", "sequence-type": "addgene-full", "addgene_id": "144467", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144467.addgene-full.gb" }, @@ -294371,7 +312253,10 @@ "plasmid_name": "pHPK1212", "sequence-type": "depositor-full", "addgene_id": "8834", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2004.08.016", + "https://www.ncbi.nlm.nih.gov/pubmed/15477088" + ], "kit": null, "att_sites": [ "attB1", @@ -294416,7 +312301,10 @@ "plasmid_name": "pDONR221_SLC26A1", "sequence-type": "addgene-full", "addgene_id": "131972", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -294447,7 +312335,10 @@ "plasmid_name": "TFORF3311", "sequence-type": "addgene-full", "addgene_id": "144787", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -294507,7 +312398,10 @@ "plasmid_name": "TFORF3357", "sequence-type": "addgene-full", "addgene_id": "144833", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -294567,7 +312461,10 @@ "plasmid_name": "pDONR223-ZNF112", "sequence-type": "addgene-full", "addgene_id": "88024", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -294596,7 +312493,10 @@ "plasmid_name": "pHAGE-EGFR-T263P", "sequence-type": "addgene-full", "addgene_id": "116307", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -294650,7 +312550,9 @@ "plasmid_name": "pUB-nSypHer (NLS:sypHer:NLS)", "sequence-type": "addgene-full", "addgene_id": "84731", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "att_sites": [ "attB1", @@ -294688,7 +312590,6 @@ "plasmid_name": "pDEST27-GST-hSFRP1(aa53-169)", "sequence-type": "addgene-full", "addgene_id": "189545", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -294736,7 +312637,10 @@ "plasmid_name": "pDONR221-SLC25A43_STOP", "sequence-type": "addgene-full", "addgene_id": "161196", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -294767,7 +312671,10 @@ "plasmid_name": "pEBTet-SNAP-Cep41", "sequence-type": "addgene-full", "addgene_id": "136794", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -294814,7 +312721,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep72", "sequence-type": "addgene-full", "addgene_id": "136820", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -294859,7 +312769,10 @@ "plasmid_name": "pDONR223_PTPN12_p.E57D", "sequence-type": "addgene-full", "addgene_id": "81528", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -294891,7 +312804,10 @@ "plasmid_name": "pDONR223_IDH2_p.K130del", "sequence-type": "addgene-full", "addgene_id": "82761", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -294920,7 +312836,10 @@ "plasmid_name": "pDONR P2R-P3-SV40 polyA signal", "sequence-type": "depositor-full", "addgene_id": "48627", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -294957,7 +312876,10 @@ "plasmid_name": "pDONR221 Cas9-RFC5", "sequence-type": "addgene-full", "addgene_id": "183200", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "att_sites": [ "attL1", @@ -294991,7 +312913,10 @@ "plasmid_name": "pDONR221_eGFP (open)", "sequence-type": "addgene-full", "addgene_id": "160094", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attL1", @@ -295026,7 +312951,10 @@ "plasmid_name": "actc1b-mKate2-rab3da", "sequence-type": "addgene-full", "addgene_id": "109638", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -295068,7 +312996,10 @@ "plasmid_name": "pCSDest2-SpCas9-NLS-3XHA-NLS", "sequence-type": "depositor-full", "addgene_id": "69220", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3624", + "https://www.ncbi.nlm.nih.gov/pubmed/26480473" + ], "kit": null, "att_sites": [ "attB1", @@ -295112,7 +313043,10 @@ "plasmid_name": "pENT-L1-Kozak-Ark-L2", "sequence-type": "addgene-full", "addgene_id": "186362", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL1", @@ -295152,7 +313086,10 @@ "plasmid_name": "MAC_N_COMMD10", "sequence-type": "addgene-full", "addgene_id": "209682", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -295197,7 +313134,10 @@ "plasmid_name": "pHDT1:GUS", "sequence-type": "addgene-full", "addgene_id": "108441", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "att_sites": [ "attB1", @@ -295237,7 +313177,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP5", "sequence-type": "addgene-full", "addgene_id": "154404", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -295267,7 +313210,10 @@ "plasmid_name": "pHAGE-EGFR-L838V", "sequence-type": "addgene-full", "addgene_id": "116275", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -295321,7 +313267,10 @@ "plasmid_name": "TFORF3465", "sequence-type": "addgene-full", "addgene_id": "144941", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -295381,7 +313330,10 @@ "plasmid_name": "NUDT16", "sequence-type": "addgene-full", "addgene_id": "155794", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -295424,7 +313376,10 @@ "plasmid_name": "pDONR221-Basigin_iso2", "sequence-type": "addgene-full", "addgene_id": "221416", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -295455,7 +313410,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF6", "sequence-type": "depositor-full", "addgene_id": "168881", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -295484,7 +313442,10 @@ "plasmid_name": "p{ie1-DsRed::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182190", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -295527,7 +313488,10 @@ "plasmid_name": "pDONR223_GALNTL5_WT", "sequence-type": "addgene-full", "addgene_id": "81895", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -295559,7 +313523,10 @@ "plasmid_name": "pDONR221-SLC2A14_STOP", "sequence-type": "addgene-full", "addgene_id": "161304", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -295590,7 +313557,10 @@ "plasmid_name": "pDONR223_EGFR_p.P622S", "sequence-type": "addgene-full", "addgene_id": "81721", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -295623,7 +313593,10 @@ "plasmid_name": "TFORF3039", "sequence-type": "addgene-full", "addgene_id": "144515", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144515.addgene-full.gb" }, @@ -295632,7 +313605,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp12", "sequence-type": "addgene-full", "addgene_id": "168927", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -295661,7 +313637,10 @@ "plasmid_name": "pHAGE-BRAF-S607F", "sequence-type": "addgene-full", "addgene_id": "116195", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -295716,7 +313695,10 @@ "plasmid_name": "pDONR223 MERS-CoV NSP3_nostop", "sequence-type": "addgene-full", "addgene_id": "168608", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -295745,7 +313727,10 @@ "plasmid_name": "pLX302-MKP7-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87771", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "att_sites": [ "attB1", @@ -295806,7 +313791,10 @@ "plasmid_name": "pMuLE ENTR CMV L5-L2", "sequence-type": "depositor-full", "addgene_id": "62091", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -295839,7 +313827,10 @@ "plasmid_name": "pAG426GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14275", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -295900,7 +313891,10 @@ "plasmid_name": "KN302: pMVP/SB/eCFP-DEST", "sequence-type": "addgene-full", "addgene_id": "121863", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -295943,7 +313937,10 @@ "plasmid_name": "pYPQ230-RVQ", "sequence-type": "addgene-full", "addgene_id": "200187", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02929-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37122009" + ], "kit": null, "att_sites": [ "attL1", @@ -295975,7 +313972,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-DYRK1B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158183", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -296041,7 +314037,9 @@ "plasmid_name": "pMpGWB221", "sequence-type": "depositor-full", "addgene_id": "68612", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -296088,7 +314086,9 @@ "plasmid_name": "pDEST tol2 UbB polyA", "sequence-type": "addgene-full", "addgene_id": "188701", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "att_sites": [ "attB3", @@ -296131,7 +314131,10 @@ "plasmid_name": "pT3EF1aH-myr-Akt", "sequence-type": "addgene-full", "addgene_id": "179909", - "references": [], + "references": [ + "https://doi.org/10.1002/hep.24736", + "https://www.ncbi.nlm.nih.gov/pubmed/21993994" + ], "kit": null, "att_sites": [ "attB1", @@ -296174,7 +314177,9 @@ "plasmid_name": "p3E-CMVmin:GFP no-pA", "sequence-type": "depositor-full", "addgene_id": "80819", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -296212,7 +314217,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp5", "sequence-type": "addgene-full", "addgene_id": "168868", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -296241,7 +314249,10 @@ "plasmid_name": "pDONR223-ZNF366", "sequence-type": "addgene-full", "addgene_id": "88019", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -296270,7 +314281,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.V600G", "sequence-type": "addgene-full", "addgene_id": "82873", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -296300,7 +314314,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 WT", "sequence-type": "addgene-full", "addgene_id": "129296", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attB1", @@ -296344,7 +314361,10 @@ "plasmid_name": "HE401: pMVP (L1-R5) shRNA", "sequence-type": "addgene-full", "addgene_id": "121698", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -296377,7 +314397,10 @@ "plasmid_name": "pDONR223_THEMIS_p.R196I", "sequence-type": "addgene-full", "addgene_id": "81515", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -296409,7 +314432,10 @@ "plasmid_name": "pENTR D-TOPO-C3_7", "sequence-type": "depositor-full", "addgene_id": "60256", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -296440,7 +314466,10 @@ "plasmid_name": "pDONR221-SLC22A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161130", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -296471,7 +314500,10 @@ "plasmid_name": "TFORF3419", "sequence-type": "addgene-full", "addgene_id": "144895", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -296531,7 +314563,10 @@ "plasmid_name": "actc1b-mKate2-rab1aa", "sequence-type": "addgene-full", "addgene_id": "109605", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -296573,7 +314608,10 @@ "plasmid_name": "TFORF3245", "sequence-type": "addgene-full", "addgene_id": "144721", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -296633,7 +314671,10 @@ "plasmid_name": "JDW 827 (pCS2-V5-mTagBFP2-hsKRAS4A-G12D)", "sequence-type": "addgene-full", "addgene_id": "156409", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -296675,7 +314716,10 @@ "plasmid_name": "p21-WT-MEFV", "sequence-type": "addgene-full", "addgene_id": "134702", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "att_sites": [ "attB1", @@ -296732,7 +314776,6 @@ "plasmid_name": "R777-E304 Hs.SAV1-nostop", "sequence-type": "depositor-full", "addgene_id": "70588", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -296760,7 +314803,6 @@ "plasmid_name": "Ad-hSNRK-his", "sequence-type": "addgene-full", "addgene_id": "131580", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -296797,7 +314839,10 @@ "plasmid_name": "pDONR223_LCK_WT", "sequence-type": "addgene-full", "addgene_id": "82305", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -296826,7 +314871,10 @@ "plasmid_name": "C122-E14: mKate", "sequence-type": "addgene-full", "addgene_id": "162894", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -296859,7 +314907,10 @@ "plasmid_name": "pCMU-MITr", "sequence-type": "depositor-full", "addgene_id": "61198", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61198.depositor-full.gb" }, @@ -296868,7 +314919,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-GABARAP-GFP", "sequence-type": "addgene-full", "addgene_id": "123111", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -296920,7 +314974,10 @@ "plasmid_name": "pDONR221_SLC38A9", "sequence-type": "addgene-full", "addgene_id": "132070", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -296951,7 +315008,10 @@ "plasmid_name": "pHAGE-IGF1R-R996W", "sequence-type": "addgene-full", "addgene_id": "116418", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -297005,7 +315065,10 @@ "plasmid_name": "pMuLE ENTR U6-miR-30 L1-R5", "sequence-type": "depositor-full", "addgene_id": "62113", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -297041,7 +315104,10 @@ "plasmid_name": "pcDNA5 CMV 3xFG eIF4G1", "sequence-type": "addgene-full", "addgene_id": "158775", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2020.01.006", + "https://www.ncbi.nlm.nih.gov/pubmed/31999954" + ], "kit": null, "att_sites": [ "attB1", @@ -297084,7 +315150,6 @@ "plasmid_name": "R777-E160 Hs.PDPK1-nostop", "sequence-type": "depositor-full", "addgene_id": "70444", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -297112,7 +315177,6 @@ "plasmid_name": "IDG_KCNC4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161689", - "references": [], "kit": null, "file": "data/addgene_plasmids/161689.addgene-full.gb" }, @@ -297121,7 +315185,10 @@ "plasmid_name": "pDEST40-2XHA-Src-Y530F", "sequence-type": "addgene-full", "addgene_id": "140318", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -297173,7 +315240,10 @@ "plasmid_name": "pENTR-GFP-WT1 +KTS C terminal HA", "sequence-type": "addgene-full", "addgene_id": "217640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "att_sites": [ "attB2", @@ -297208,7 +315278,6 @@ "plasmid_name": "p667-UBC-BRSK1-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135259", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -297274,7 +315343,10 @@ "plasmid_name": "pHAGE-PIK3CA-E545D", "sequence-type": "addgene-full", "addgene_id": "116483", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -297328,7 +315400,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-ORF4", "sequence-type": "depositor-full", "addgene_id": "168903", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168903.depositor-full.gb" }, @@ -297337,7 +315412,10 @@ "plasmid_name": "pDONR223-PIM1", "sequence-type": "addgene-full", "addgene_id": "23692", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -297369,7 +315447,10 @@ "plasmid_name": "pDONR223-PNCK", "sequence-type": "addgene-full", "addgene_id": "23572", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -297401,7 +315482,10 @@ "plasmid_name": "pCK004 ubi:mCerulean_SV40 (#302)", "sequence-type": "addgene-full", "addgene_id": "195978", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attB1", @@ -297444,7 +315528,10 @@ "plasmid_name": "pHAGE-PIK3CB-L1049R", "sequence-type": "addgene-full", "addgene_id": "116557", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -297499,7 +315586,6 @@ "plasmid_name": "R777-E106 Hs.INSR-nostop", "sequence-type": "depositor-full", "addgene_id": "70390", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -297527,7 +315613,10 @@ "plasmid_name": "pDONR221-TARG1", "sequence-type": "addgene-full", "addgene_id": "172577", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attL1", @@ -297558,7 +315647,10 @@ "plasmid_name": "Tol2-LyzC-PBD-GFP-U6ac-rac2 guides", "sequence-type": "addgene-full", "addgene_id": "168251", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "att_sites": [ "attB1", @@ -297599,7 +315691,10 @@ "plasmid_name": "pMuLE Lenti Dest IFP1.4", "sequence-type": "addgene-full", "addgene_id": "62177", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR1", @@ -297661,7 +315756,9 @@ "plasmid_name": "pFLIP32", "sequence-type": "depositor-full", "addgene_id": "65500", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -297700,7 +315797,6 @@ "plasmid_name": "pAG416GAL10-ZIKV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203477", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -297749,7 +315845,10 @@ "plasmid_name": "pDONR221-SLC4A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161426", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -297780,7 +315879,10 @@ "plasmid_name": "pT2-cryR;lmo2P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90162", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90162.addgene-full.gb" }, @@ -297789,7 +315891,9 @@ "plasmid_name": "pcDNA5-3xFLAG-TAF5-FL", "sequence-type": "addgene-full", "addgene_id": "209049", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attB1", @@ -297832,7 +315936,10 @@ "plasmid_name": "PB-TAC-OSKM", "sequence-type": "depositor-full", "addgene_id": "80481", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "att_sites": [ "attB1", @@ -297885,7 +315992,6 @@ "plasmid_name": "DDX3X - I179T in pENTR", "sequence-type": "addgene-full", "addgene_id": "216576", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -297914,7 +316020,10 @@ "plasmid_name": "pDEST-Myc-FBW7 Delta D-Domain", "sequence-type": "addgene-full", "addgene_id": "197453", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "att_sites": [ "attB1", @@ -297966,7 +316075,10 @@ "plasmid_name": "pENTR223-BLLF1(gp350)", "sequence-type": "addgene-full", "addgene_id": "195837", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195837.addgene-full.gb" }, @@ -297975,7 +316087,10 @@ "plasmid_name": "pENTR223-BARF1", "sequence-type": "addgene-full", "addgene_id": "195783", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -298004,7 +316119,10 @@ "plasmid_name": "pENTR TERRA", "sequence-type": "depositor-full", "addgene_id": "111383", - "references": [], + "references": [ + "https://doi.org/10.3390/genes7080046", + "https://www.ncbi.nlm.nih.gov/pubmed/27537914" + ], "kit": null, "att_sites": [ "attL1", @@ -298035,7 +316153,10 @@ "plasmid_name": "C512-E01: attB5r-meGFP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162940", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -298067,7 +316188,10 @@ "plasmid_name": "pDONR223_ZDHHC4_p.R174H", "sequence-type": "addgene-full", "addgene_id": "81378", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -298099,7 +316223,10 @@ "plasmid_name": "pCR8/GW/TOPO-ELK4", "sequence-type": "addgene-full", "addgene_id": "98617", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -298128,7 +316255,6 @@ "plasmid_name": "g6t pDONR", "sequence-type": "addgene-full", "addgene_id": "117455", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -298159,7 +316285,10 @@ "plasmid_name": "pAG414GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14144", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -298218,7 +316347,10 @@ "plasmid_name": "HMGN1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176943", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -298270,7 +316402,10 @@ "plasmid_name": "pDONR221_SLC7A11", "sequence-type": "addgene-full", "addgene_id": "132244", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -298301,7 +316436,10 @@ "plasmid_name": "pDONR223-PFKP", "sequence-type": "addgene-full", "addgene_id": "23869", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -298333,7 +316471,10 @@ "plasmid_name": "p5E-mpeg1.1", "sequence-type": "depositor-full", "addgene_id": "75023", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -298369,7 +316510,10 @@ "plasmid_name": "pLCS111", "sequence-type": "addgene-full", "addgene_id": "209332", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -298409,7 +316553,10 @@ "plasmid_name": "pLKO.DEST.EGFP", "sequence-type": "depositor-full", "addgene_id": "32684", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "att_sites": [ "attR1", @@ -298464,7 +316611,10 @@ "plasmid_name": "pDL71", "sequence-type": "addgene-full", "addgene_id": "175903", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -298488,7 +316638,10 @@ "plasmid_name": "MAC_N_TOM22", "sequence-type": "addgene-full", "addgene_id": "111697", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -298533,7 +316686,6 @@ "plasmid_name": "pDONR221-chodl", "sequence-type": "addgene-full", "addgene_id": "192738", - "references": [], "kit": null, "file": "data/addgene_plasmids/192738.addgene-full.gb" }, @@ -298542,7 +316694,10 @@ "plasmid_name": "W118-1_hTGM5-Flag", "sequence-type": "addgene-full", "addgene_id": "180410", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "att_sites": [ "attB1", @@ -298605,7 +316760,6 @@ "plasmid_name": "pEF 1-PSN-4", "sequence-type": "depositor-full", "addgene_id": "20084", - "references": [], "kit": null, "file": "data/addgene_plasmids/20084.depositor-full.gb" }, @@ -298614,7 +316768,10 @@ "plasmid_name": "pHAGE-KRAS-Q61R", "sequence-type": "addgene-full", "addgene_id": "116425", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB2" @@ -298663,7 +316820,9 @@ "plasmid_name": "pMpGWB409", "sequence-type": "depositor-full", "addgene_id": "68674", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -298713,7 +316872,6 @@ "plasmid_name": "pAG426GAL-HHV-3_PR", "sequence-type": "addgene-full", "addgene_id": "203505", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -298767,7 +316925,10 @@ "plasmid_name": "pDONR223_REG1B_p.P30S", "sequence-type": "addgene-full", "addgene_id": "81291", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -298779,7 +316940,10 @@ "plasmid_name": "pAG413GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14213", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -298841,7 +317005,6 @@ "plasmid_name": "p663-UBC-TurboID-V5-eGFP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135264", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -298910,7 +317073,10 @@ "plasmid_name": "pMT mir-1-1 reporter hsa-mir-128-1", "sequence-type": "depositor-full", "addgene_id": "46743", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -298951,7 +317117,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_K36A_R38A_E39A", "sequence-type": "depositor-full", "addgene_id": "65657", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1" @@ -298969,7 +317138,10 @@ "plasmid_name": "pCAG/ATP8A1(E191Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209240", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -299014,7 +317186,6 @@ "plasmid_name": "p416 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58552", - "references": [], "kit": null, "file": "data/addgene_plasmids/58552.depositor-full.gb" }, @@ -299023,7 +317194,10 @@ "plasmid_name": "pSC22", "sequence-type": "addgene-full", "addgene_id": "104796", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104796.addgene-full.gb" }, @@ -299032,7 +317206,10 @@ "plasmid_name": "pME-MLS-KillerRed", "sequence-type": "addgene-full", "addgene_id": "115517", - "references": [], + "references": [ + "https://doi.org/10.1016/j.redox.2018.08.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30193184" + ], "kit": null, "att_sites": [ "attL1", @@ -299063,7 +317240,10 @@ "plasmid_name": "pAct-PE2-HygroR", "sequence-type": "addgene-full", "addgene_id": "149552", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2021996118", + "https://www.ncbi.nlm.nih.gov/pubmed/33443210" + ], "kit": null, "att_sites": [ "attB1", @@ -299096,7 +317276,10 @@ "plasmid_name": "pLentiPGK Puro DEST p38KTRClover", "sequence-type": "addgene-full", "addgene_id": "59152", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attB1", @@ -299158,7 +317341,10 @@ "plasmid_name": "pAG414GPD-SlCYP722C(pYL1071)", "sequence-type": "addgene-full", "addgene_id": "178294", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -299210,7 +317396,10 @@ "plasmid_name": "BirA-Myc_N_TLX1", "sequence-type": "addgene-full", "addgene_id": "167730", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -299254,7 +317443,10 @@ "plasmid_name": "pDONR223_BTK_WT", "sequence-type": "addgene-full", "addgene_id": "82197", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -299283,7 +317475,10 @@ "plasmid_name": "pDONR223_RNF2_WT", "sequence-type": "addgene-full", "addgene_id": "82277", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -299312,7 +317507,10 @@ "plasmid_name": "pDONR221_SLC2A4", "sequence-type": "addgene-full", "addgene_id": "132102", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -299343,7 +317541,10 @@ "plasmid_name": "pEN_TT miRc2 3xFLAG", "sequence-type": "depositor-full", "addgene_id": "83274", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/83274.depositor-full.gb" }, @@ -299352,7 +317553,10 @@ "plasmid_name": "pDEST-Cas9-tdTomato", "sequence-type": "addgene-full", "addgene_id": "141013", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR3", @@ -299402,7 +317606,10 @@ "plasmid_name": "pDONR221_SLC9A8", "sequence-type": "addgene-full", "addgene_id": "132199", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -299433,7 +317640,10 @@ "plasmid_name": "pHAGE-PTCH1-D894N", "sequence-type": "addgene-full", "addgene_id": "116611", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -299487,7 +317697,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD5-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113493", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -299531,7 +317744,10 @@ "plasmid_name": "pDONR221-SLC25A24_STOP", "sequence-type": "depositor-full", "addgene_id": "161146", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -299562,7 +317778,10 @@ "plasmid_name": "pHAGE-eGFP-OPTN S473A 513A", "sequence-type": "addgene-full", "addgene_id": "175763", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -299615,7 +317834,10 @@ "plasmid_name": "pLX302_HOXB13", "sequence-type": "depositor-full", "addgene_id": "70089", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.3419", + "https://www.ncbi.nlm.nih.gov/pubmed/26457646" + ], "kit": null, "att_sites": [ "attB1", @@ -299676,7 +317898,10 @@ "plasmid_name": "Flag-HA-USP29", "sequence-type": "addgene-full", "addgene_id": "22599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -299725,7 +317950,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PKN3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170601", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -299791,7 +318015,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST MTFR1L-V5", "sequence-type": "addgene-full", "addgene_id": "69822", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "file": "data/addgene_plasmids/69822.addgene-full.gb" }, @@ -299800,7 +318027,10 @@ "plasmid_name": "pDONR223_PRR23B_p.E140K", "sequence-type": "addgene-full", "addgene_id": "81345", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -299832,7 +318062,10 @@ "plasmid_name": "MAC_C_ERBB2", "sequence-type": "addgene-full", "addgene_id": "187776", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -299877,7 +318110,10 @@ "plasmid_name": "pDONR221-NIPAL2", "sequence-type": "addgene-full", "addgene_id": "132279", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -299908,7 +318144,10 @@ "plasmid_name": "R619-M67-303: CMV51p> SARS-CoV-2 S-RBD(319-541)-His6", "sequence-type": "addgene-full", "addgene_id": "166018", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -299962,7 +318201,10 @@ "plasmid_name": "pSLIK 3xFLAG-KPNB1 zeo", "sequence-type": "addgene-full", "addgene_id": "192326", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -300027,7 +318269,6 @@ "plasmid_name": "R777-E056 Hs.EIF4EBP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70340", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -300055,7 +318296,10 @@ "plasmid_name": "MLKP2del4", "sequence-type": "addgene-full", "addgene_id": "130837", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attB1", @@ -300091,7 +318335,10 @@ "plasmid_name": "pDONR223_RBM45_WT", "sequence-type": "addgene-full", "addgene_id": "82892", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -300120,7 +318367,10 @@ "plasmid_name": "pAG425GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14369", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -300181,7 +318431,10 @@ "plasmid_name": "pGWB529", "sequence-type": "depositor-full", "addgene_id": "74871", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -300231,7 +318484,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP5", "sequence-type": "addgene-full", "addgene_id": "158356", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158356.addgene-full.gb" }, @@ -300240,7 +318496,10 @@ "plasmid_name": "actc1b-mKate2-ATG18", "sequence-type": "addgene-full", "addgene_id": "109504", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -300282,7 +318541,10 @@ "plasmid_name": "TFORF2944", "sequence-type": "addgene-full", "addgene_id": "144420", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -300344,7 +318606,9 @@ "plasmid_name": "stblHIF: pLenti-PGK-stblHIF-PGK-Puro", "sequence-type": "addgene-full", "addgene_id": "177202", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.05.17.492374" + ], "kit": null, "att_sites": [ "attB1", @@ -300405,7 +318669,10 @@ "plasmid_name": "pDONR221-MPC1_STOP", "sequence-type": "depositor-full", "addgene_id": "161072", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -300436,7 +318703,10 @@ "plasmid_name": "pDONR221-SLC30A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161231", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -300467,7 +318737,10 @@ "plasmid_name": "pCFJ421 - Pmyo-2::GFP::H2B (pharynx)", "sequence-type": "depositor-full", "addgene_id": "34876", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attB1", @@ -300498,7 +318771,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.E250K", "sequence-type": "addgene-full", "addgene_id": "81614", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -300530,7 +318806,6 @@ "plasmid_name": "SYNJ1_BirA_Nterm", "sequence-type": "addgene-full", "addgene_id": "221523", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -300574,7 +318849,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep57", "sequence-type": "addgene-full", "addgene_id": "136867", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -300618,7 +318896,6 @@ "plasmid_name": "R777-E343 Hs.TFDP1", "sequence-type": "depositor-full", "addgene_id": "70627", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -300646,7 +318923,10 @@ "plasmid_name": "pDONR223_KRAS_p.G13C", "sequence-type": "addgene-full", "addgene_id": "82809", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -300676,7 +318956,10 @@ "plasmid_name": "pAG415GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14194", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -300737,7 +319020,10 @@ "plasmid_name": "TFORF3398", "sequence-type": "addgene-full", "addgene_id": "144874", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -300797,7 +319083,10 @@ "plasmid_name": "pcDNA3_GCGR-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194376", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -300854,7 +319143,10 @@ "plasmid_name": "RBMX2-1", "sequence-type": "addgene-full", "addgene_id": "155915", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -300897,7 +319189,10 @@ "plasmid_name": "pDONR221_SLC16A6", "sequence-type": "addgene-full", "addgene_id": "131935", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -300928,7 +319223,10 @@ "plasmid_name": "p{Mhc-F4-678-DsRed::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182171", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -300973,7 +319271,10 @@ "plasmid_name": "pDONR223_VHL_WT", "sequence-type": "addgene-full", "addgene_id": "81874", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -301005,7 +319306,10 @@ "plasmid_name": "p7135 pHAGE-P-CMVt-N-HA-GAW-EIF3E", "sequence-type": "addgene-full", "addgene_id": "100147", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -301057,7 +319361,6 @@ "plasmid_name": "p667-UBC-NEK7-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189882", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -301122,7 +319425,10 @@ "plasmid_name": "TFORF3536", "sequence-type": "depositor-full", "addgene_id": "145012", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -301182,7 +319488,10 @@ "plasmid_name": "pYPQ286 (CMaCas12a)", "sequence-type": "addgene-full", "addgene_id": "138122", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -301214,7 +319523,10 @@ "plasmid_name": "pHAGE-BRAF-L485W", "sequence-type": "addgene-full", "addgene_id": "116174", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -301269,7 +319581,6 @@ "plasmid_name": "R777-E210 Hs.RAC2-nostop", "sequence-type": "depositor-full", "addgene_id": "70494", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -301297,7 +319608,9 @@ "plasmid_name": "pDONR221-CALM3(3of4)", "sequence-type": "addgene-full", "addgene_id": "166157", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -301329,7 +319642,10 @@ "plasmid_name": "JV201: pMAGIC (L3-L2) 3x HA epitope tag + polyA; hU6::SaCas9 TRE#1 gRNA", "sequence-type": "addgene-full", "addgene_id": "131755", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -301366,7 +319682,10 @@ "plasmid_name": "pHAGE-EGFR-R252C", "sequence-type": "addgene-full", "addgene_id": "116294", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -301416,7 +319735,10 @@ "plasmid_name": "pAG304GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14327", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -301475,7 +319797,10 @@ "plasmid_name": "pAC1817_pCR8-gSMN2-EX", "sequence-type": "addgene-full", "addgene_id": "118651", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -301508,7 +319833,10 @@ "plasmid_name": "TFORF3138", "sequence-type": "addgene-full", "addgene_id": "144614", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -301568,7 +319896,10 @@ "plasmid_name": "pDONR223_CNBD1_p.Y200F", "sequence-type": "addgene-full", "addgene_id": "81420", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -301600,7 +319931,10 @@ "plasmid_name": "pHPdesteGFP", "sequence-type": "depositor-full", "addgene_id": "24566", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.20637", + "https://www.ncbi.nlm.nih.gov/pubmed/20506180" + ], "kit": null, "att_sites": [ "attR1", @@ -301643,7 +319977,10 @@ "plasmid_name": "KB601: pMAGIC (L5-L4) hU6::SaCas9 gRNA scaffold; EF1a promoter", "sequence-type": "addgene-full", "addgene_id": "121819", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -301679,7 +320016,10 @@ "plasmid_name": "IO301: pMVP (R4-R3) eYFP", "sequence-type": "addgene-full", "addgene_id": "121736", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -301714,7 +320054,10 @@ "plasmid_name": "pDEST/N1-hBIN1-GFP", "sequence-type": "addgene-full", "addgene_id": "27305", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.1000312", + "https://www.ncbi.nlm.nih.gov/pubmed/20169111" + ], "kit": null, "att_sites": [ "attB1", @@ -301756,7 +320099,6 @@ "plasmid_name": "pGEX6P1-DEST-Strep2", "sequence-type": "addgene-full", "addgene_id": "119753", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -301801,7 +320143,10 @@ "plasmid_name": "pDONR223_ABCB9_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82946", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -301831,7 +320176,6 @@ "plasmid_name": "p663-UBC-2xV5-TurboID-NES-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158162", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -301898,7 +320242,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-138-2", "sequence-type": "depositor-full", "addgene_id": "46677", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -301948,7 +320295,10 @@ "plasmid_name": "pENTR223.1_mmDdx58 (closed)", "sequence-type": "addgene-full", "addgene_id": "160107", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attL1", @@ -301977,7 +320327,6 @@ "plasmid_name": "pFRT-TODestGFP_HuD", "sequence-type": "depositor-full", "addgene_id": "65763", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -302023,7 +320372,10 @@ "plasmid_name": "TFORF3290", "sequence-type": "addgene-full", "addgene_id": "144766", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -302083,7 +320435,10 @@ "plasmid_name": "actc1b-mKate2-rab42a", "sequence-type": "addgene-full", "addgene_id": "109642", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -302125,7 +320480,10 @@ "plasmid_name": "pDONR221_SLC25A33", "sequence-type": "addgene-full", "addgene_id": "131993", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -302156,7 +320514,10 @@ "plasmid_name": "pLVX-CMV-Flag-PolB(K244A/T304I)-Puro", "sequence-type": "addgene-full", "addgene_id": "177144", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkz293", + "https://www.ncbi.nlm.nih.gov/pubmed/31287140" + ], "kit": null, "att_sites": [ "attB1", @@ -302206,7 +320567,10 @@ "plasmid_name": "pDONR221-SLC22A15_STOP", "sequence-type": "addgene-full", "addgene_id": "161177", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -302237,7 +320601,10 @@ "plasmid_name": "pDONR223_THEMIS_p.D240N", "sequence-type": "addgene-full", "addgene_id": "81552", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -302269,7 +320636,10 @@ "plasmid_name": "pDONR221-SLC37A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161297", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -302300,7 +320670,9 @@ "plasmid_name": "pLentiN MmuPV1 E6 R130A", "sequence-type": "addgene-full", "addgene_id": "87679", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28107544" + ], "kit": null, "att_sites": [ "attB1", @@ -302362,7 +320734,10 @@ "plasmid_name": "TFORF3010", "sequence-type": "addgene-full", "addgene_id": "144486", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -302422,7 +320797,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mScarlet-I-RfA", "sequence-type": "addgene-full", "addgene_id": "186383", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -302468,7 +320842,9 @@ "plasmid_name": "p5E-ESyn1", "sequence-type": "addgene-full", "addgene_id": "80804", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL4", @@ -302500,7 +320876,10 @@ "plasmid_name": "p3E-CaaX(tH)", "sequence-type": "addgene-full", "addgene_id": "109539", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -302533,7 +320912,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-Envelope", "sequence-type": "depositor-full", "addgene_id": "168879", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -302562,7 +320944,6 @@ "plasmid_name": "pCFJ352", "sequence-type": "depositor-full", "addgene_id": "30539", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -302595,7 +320976,10 @@ "plasmid_name": "pDONR223_STAG2_p.E134D", "sequence-type": "addgene-full", "addgene_id": "81629", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -302627,7 +321011,10 @@ "plasmid_name": "IQGAP1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98346", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -302687,7 +321074,10 @@ "plasmid_name": "pDONR223_RBM10_p.Y580F", "sequence-type": "addgene-full", "addgene_id": "82834", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -302718,7 +321108,10 @@ "plasmid_name": "1208 p3e-long etv2 3\u2019UTR", "sequence-type": "depositor-full", "addgene_id": "49010", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "att_sites": [ "attL3", @@ -302749,7 +321142,10 @@ "plasmid_name": "pDONR221-ZNF579_isoform2", "sequence-type": "depositor-full", "addgene_id": "101569", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -302780,7 +321176,10 @@ "plasmid_name": "pCK081 desmaMCS:minpromCerulean,exorh:mCherry", "sequence-type": "addgene-full", "addgene_id": "200014", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attB1", @@ -302828,7 +321227,10 @@ "plasmid_name": "pDONR223_FBXW7_p.P620R", "sequence-type": "addgene-full", "addgene_id": "82780", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -302857,7 +321259,10 @@ "plasmid_name": "pDONR221_SLC12A2", "sequence-type": "addgene-full", "addgene_id": "131908", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -302888,7 +321293,10 @@ "plasmid_name": "TFORF3373", "sequence-type": "addgene-full", "addgene_id": "144849", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -302948,7 +321356,10 @@ "plasmid_name": "pCM1.35", "sequence-type": "depositor-full", "addgene_id": "17248", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -302973,7 +321384,9 @@ "plasmid_name": "pPB-cT3G-cERP2-ESX1", "sequence-type": "addgene-full", "addgene_id": "222563", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -303019,7 +321432,10 @@ "plasmid_name": "pWPI-TFDP1", "sequence-type": "addgene-full", "addgene_id": "114299", - "references": [], + "references": [ + "https://doi.org/10.4161/cc.25834", + "https://www.ncbi.nlm.nih.gov/pubmed/23907129" + ], "kit": null, "att_sites": [ "attB1", @@ -303077,7 +321493,10 @@ "plasmid_name": "pDONR223_ISX_WT", "sequence-type": "addgene-full", "addgene_id": "81849", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -303109,7 +321528,10 @@ "plasmid_name": "pHAGE-BRAF-G466A", "sequence-type": "addgene-full", "addgene_id": "116149", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -303164,7 +321586,10 @@ "plasmid_name": "pENTR221 UBR5 \u2206UBR", "sequence-type": "depositor-full", "addgene_id": "81063", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "att_sites": [ "attL1", @@ -303195,7 +321620,10 @@ "plasmid_name": "pTone-gata2aECE-nsGFP", "sequence-type": "addgene-full", "addgene_id": "132975", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132975.addgene-full.gb" }, @@ -303204,7 +321632,10 @@ "plasmid_name": "TFORF3153", "sequence-type": "addgene-full", "addgene_id": "144629", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -303264,7 +321695,10 @@ "plasmid_name": "IF311: pMAGIC (R4-R3) NLS-Sa dCas9-NLS-LSD1", "sequence-type": "addgene-full", "addgene_id": "121824", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -303298,7 +321732,10 @@ "plasmid_name": "pDONR221-SLC10A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161038", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -303329,7 +321766,6 @@ "plasmid_name": "R777-E286 Hs.ROCK2-nostop", "sequence-type": "depositor-full", "addgene_id": "70570", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -303357,7 +321793,9 @@ "plasmid_name": "p2K7-bsd-UBI-tagRFP-KDEL", "sequence-type": "addgene-full", "addgene_id": "114179", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29176619" + ], "kit": null, "att_sites": [ "attB1", @@ -303419,7 +321857,10 @@ "plasmid_name": "KK601: pMVP (L3-L2) ecDHFR DD + polyA", "sequence-type": "addgene-full", "addgene_id": "121790", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -303453,7 +321894,10 @@ "plasmid_name": "pEntry_MERS-CoV-Spike", "sequence-type": "depositor-full", "addgene_id": "168837", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -303483,7 +321927,10 @@ "plasmid_name": "pNX32-Dest", "sequence-type": "addgene-full", "addgene_id": "105083", - "references": [], + "references": [ + "https://doi.org/10.1002/0471142301.ns0527s41", + "https://www.ncbi.nlm.nih.gov/pubmed/18428659" + ], "kit": null, "att_sites": [ "attR1", @@ -303533,7 +321980,10 @@ "plasmid_name": "pDONR223_ELF1_p.P32S", "sequence-type": "addgene-full", "addgene_id": "81486", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -303565,7 +322015,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF3b_nostop", "sequence-type": "addgene-full", "addgene_id": "168534", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -303594,7 +322047,10 @@ "plasmid_name": "pHAGE-EGFR-A702S", "sequence-type": "addgene-full", "addgene_id": "116232", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -303648,7 +322104,10 @@ "plasmid_name": "TFORF3430", "sequence-type": "addgene-full", "addgene_id": "144906", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -303708,7 +322167,9 @@ "plasmid_name": "pDONR221-SMPDL3B", "sequence-type": "addgene-full", "addgene_id": "166211", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -303739,7 +322200,10 @@ "plasmid_name": "pPV-EF1a-2xNLS-Cse2-Cas6-Cas3-iPA", "sequence-type": "addgene-full", "addgene_id": "134925", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-13226-x", + "https://www.ncbi.nlm.nih.gov/pubmed/31811138" + ], "kit": null, "att_sites": [ "attB1", @@ -303779,7 +322243,10 @@ "plasmid_name": "TFORF3076", "sequence-type": "addgene-full", "addgene_id": "144552", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -303839,7 +322306,10 @@ "plasmid_name": "pMMK ENTR 2 hU6 ACTB sgRNA", "sequence-type": "addgene-full", "addgene_id": "206270", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL3", @@ -303864,7 +322334,10 @@ "plasmid_name": "RCASBP-Y DV", "sequence-type": "addgene-full", "addgene_id": "11478", - "references": [], + "references": [ + "https://doi.org/10.1093/dnares/8.5.221", + "https://www.ncbi.nlm.nih.gov/pubmed/11759842" + ], "kit": null, "att_sites": [ "attR1", @@ -303899,7 +322372,10 @@ "plasmid_name": "pDONR223_SERPINB4_WT", "sequence-type": "addgene-full", "addgene_id": "81766", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -303931,7 +322407,10 @@ "plasmid_name": "pDONR221-SLC39A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161343", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161343.addgene-full.gb" }, @@ -303940,7 +322419,10 @@ "plasmid_name": "pcDNA5FRT/TO-Strep/HA-UBE2J1", "sequence-type": "addgene-full", "addgene_id": "124669", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "att_sites": [ "attB1", @@ -303984,7 +322466,9 @@ "plasmid_name": "p3E EFS-rtTA/rtTA3 (JDW 1214)", "sequence-type": "addgene-full", "addgene_id": "224533", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -304023,7 +322507,6 @@ "plasmid_name": "pTol2-ziUAS:GPHN.FingR-mCherry-ZFI (IL2RGTC)-KRAB(A)", "sequence-type": "addgene-full", "addgene_id": "72639", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -304069,7 +322552,6 @@ "plasmid_name": "Hs.NRAS G12V", "sequence-type": "depositor-full", "addgene_id": "83174", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -304098,7 +322580,10 @@ "plasmid_name": "pcDNA3-FLAG-CRBN-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107380", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -304141,7 +322626,10 @@ "plasmid_name": "p3E-rab26-DN", "sequence-type": "addgene-full", "addgene_id": "109745", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -304172,7 +322660,10 @@ "plasmid_name": "TFORF3185", "sequence-type": "addgene-full", "addgene_id": "144661", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -304232,7 +322723,10 @@ "plasmid_name": "pDONR221_MFSD9", "sequence-type": "addgene-full", "addgene_id": "131894", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -304263,7 +322757,10 @@ "plasmid_name": "pDEST26 Ago2", "sequence-type": "depositor-full", "addgene_id": "59904", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2013.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/23603119" + ], "kit": null, "att_sites": [ "attB1", @@ -304312,7 +322809,10 @@ "plasmid_name": "pDONR223_IDH2_p.A47V", "sequence-type": "addgene-full", "addgene_id": "81455", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -304344,7 +322844,10 @@ "plasmid_name": "pLX-EF1a_mCherry", "sequence-type": "addgene-full", "addgene_id": "221482", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -304407,7 +322910,10 @@ "plasmid_name": "pYPQ230-RRVQ", "sequence-type": "addgene-full", "addgene_id": "200188", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02929-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37122009" + ], "kit": null, "att_sites": [ "attL1", @@ -304439,7 +322945,10 @@ "plasmid_name": "pCFJ1259", "sequence-type": "depositor-full", "addgene_id": "44479", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attR3", @@ -304474,7 +322983,10 @@ "plasmid_name": "pDONR221-FLVCR2_STOP", "sequence-type": "addgene-full", "addgene_id": "161070", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -304505,7 +323017,10 @@ "plasmid_name": "pDONR223_PNKP_WT", "sequence-type": "addgene-full", "addgene_id": "81801", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -304537,7 +323052,10 @@ "plasmid_name": "pCM5.50", "sequence-type": "depositor-full", "addgene_id": "19383", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -304568,7 +323086,10 @@ "plasmid_name": "pDONR221-SLCO1C1_STOP", "sequence-type": "addgene-full", "addgene_id": "161390", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -304599,7 +323120,10 @@ "plasmid_name": "pLenti-PGK-EGFP-ALDH1A2-Neo", "sequence-type": "addgene-full", "addgene_id": "189743", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "att_sites": [ "attB1", @@ -304664,7 +323188,10 @@ "plasmid_name": "TFORF3105", "sequence-type": "addgene-full", "addgene_id": "144581", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -304724,7 +323251,6 @@ "plasmid_name": "pmrROSA-DEST", "sequence-type": "addgene-full", "addgene_id": "86953", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -304777,7 +323303,6 @@ "plasmid_name": "pLenti UBC ERFlux (Bip-HaloTag7-mGFP-KDEL-STOP)", "sequence-type": "addgene-full", "addgene_id": "215012", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -304843,7 +323368,10 @@ "plasmid_name": "pMuLE ENTR SV40 eGFP L5-L2", "sequence-type": "depositor-full", "addgene_id": "62144", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62144.depositor-full.gb" }, @@ -304852,7 +323380,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp13", "sequence-type": "addgene-full", "addgene_id": "168928", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -304881,7 +323412,6 @@ "plasmid_name": "R777-E129 Hs.MDM2", "sequence-type": "depositor-full", "addgene_id": "70413", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -304909,7 +323439,10 @@ "plasmid_name": "A1-LCD-10R", "sequence-type": "addgene-full", "addgene_id": "178664", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -304944,7 +323477,10 @@ "plasmid_name": "pCSDest2", "sequence-type": "depositor-full", "addgene_id": "22424", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -304988,7 +323524,10 @@ "plasmid_name": "pENTR-SLC66A2_STOP", "sequence-type": "addgene-full", "addgene_id": "221419", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -305018,7 +323557,10 @@ "plasmid_name": "KJ201: pMVP (R4-R3) osTir1 open", "sequence-type": "addgene-full", "addgene_id": "121743", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -305051,7 +323593,10 @@ "plasmid_name": "pENTR1A-3xFlag-S242R-MEFV", "sequence-type": "addgene-full", "addgene_id": "167020", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-2449-4_12", + "https://www.ncbi.nlm.nih.gov/pubmed/35759198" + ], "kit": null, "att_sites": [ "attL1", @@ -305076,7 +323621,10 @@ "plasmid_name": "pDONR223_HAT1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82933", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -305105,7 +323653,6 @@ "plasmid_name": "R777-E105 Hs.INSR", "sequence-type": "depositor-full", "addgene_id": "70389", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -305133,7 +323680,9 @@ "plasmid_name": "pDRFLIP43", "sequence-type": "depositor-full", "addgene_id": "65519", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -305185,7 +323734,10 @@ "plasmid_name": "pDONR221 CARD8 Ub-S297", "sequence-type": "addgene-full", "addgene_id": "169965", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -305217,7 +323769,10 @@ "plasmid_name": "pSLIK TT 3xFLAG LacZ hygro", "sequence-type": "addgene-full", "addgene_id": "98395", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "att_sites": [ "attB1", @@ -305285,7 +323840,9 @@ "plasmid_name": "pMpGWB120", "sequence-type": "depositor-full", "addgene_id": "68574", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -305331,7 +323888,10 @@ "plasmid_name": "pDONR-221-P3-P5", "sequence-type": "addgene-full", "addgene_id": "186350", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attP3", @@ -305367,7 +323927,10 @@ "plasmid_name": "Active Wnt7B-V5", "sequence-type": "depositor-full", "addgene_id": "43817", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -305415,7 +323978,10 @@ "plasmid_name": "JDW 823 (pDONR221-V5-mScarlet-I-hsKRAS4A-G12V)", "sequence-type": "addgene-full", "addgene_id": "156406", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attL1", @@ -305451,7 +324017,10 @@ "plasmid_name": "pLenti-CMVtight-HNF1A-FLAG-Hygro", "sequence-type": "addgene-full", "addgene_id": "183232", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-022-00996-8", + "https://www.ncbi.nlm.nih.gov/pubmed/36202974" + ], "kit": null, "att_sites": [ "attB1", @@ -305513,7 +324082,10 @@ "plasmid_name": "IG703: pMVP (L1-R5) TRE promoter", "sequence-type": "addgene-full", "addgene_id": "121697", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121697.addgene-full.gb" }, @@ -305522,7 +324094,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 1-13 KR", "sequence-type": "addgene-full", "addgene_id": "129299", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attB1", @@ -305566,7 +324141,10 @@ "plasmid_name": "pDONR223_ZNF597_p.V21L", "sequence-type": "addgene-full", "addgene_id": "82753", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -305595,7 +324173,10 @@ "plasmid_name": "MLKG1delKASH", "sequence-type": "addgene-full", "addgene_id": "130842", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attB1", @@ -305631,7 +324212,10 @@ "plasmid_name": "pGAN147", "sequence-type": "addgene-full", "addgene_id": "129202", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/29056345" + ], "kit": null, "att_sites": [ "attR1", @@ -305683,7 +324267,10 @@ "plasmid_name": "pDONR223_PPP2R1A_p.R258H", "sequence-type": "addgene-full", "addgene_id": "81581", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -305716,7 +324303,10 @@ "plasmid_name": "pME-nEGFP", "sequence-type": "addgene-full", "addgene_id": "138363", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attL1", @@ -305752,7 +324342,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep63", "sequence-type": "addgene-full", "addgene_id": "136812", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -305797,7 +324390,10 @@ "plasmid_name": "MiniCoopR 2xU6:gRNA, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118844", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -305841,7 +324437,10 @@ "plasmid_name": "pHAGE-ERBB2-I767M", "sequence-type": "addgene-full", "addgene_id": "116335", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -305895,7 +324494,10 @@ "plasmid_name": "TFORF3325", "sequence-type": "addgene-full", "addgene_id": "144801", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -305955,7 +324557,10 @@ "plasmid_name": "pcDNA3.2/Envelope", "sequence-type": "addgene-full", "addgene_id": "120821", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -306006,7 +324611,10 @@ "plasmid_name": "p3E-rab33a", "sequence-type": "addgene-full", "addgene_id": "109691", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -306037,7 +324645,10 @@ "plasmid_name": "pDONR221_MFSD12", "sequence-type": "addgene-full", "addgene_id": "131940", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -306069,7 +324680,10 @@ "plasmid_name": "p3E-Dnm2a", "sequence-type": "addgene-full", "addgene_id": "109571", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -306100,7 +324714,10 @@ "plasmid_name": "TFORF2979", "sequence-type": "addgene-full", "addgene_id": "144455", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -306160,7 +324777,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp4", "sequence-type": "addgene-full", "addgene_id": "168867", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -306189,7 +324809,6 @@ "plasmid_name": "pCWXPG-UBI-PDX1:VP16", "sequence-type": "addgene-full", "addgene_id": "114305", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -306247,7 +324866,10 @@ "plasmid_name": "pCMB-PMr", "sequence-type": "depositor-full", "addgene_id": "61181", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -306293,7 +324915,10 @@ "plasmid_name": "pDONR223_VHL_p.E186K", "sequence-type": "addgene-full", "addgene_id": "81661", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -306325,7 +324950,10 @@ "plasmid_name": "pLenti-PGK-Neo-PIP-NLS-mVenus", "sequence-type": "addgene-full", "addgene_id": "118619", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "att_sites": [ "attB1", @@ -306391,7 +325019,10 @@ "plasmid_name": "pGL3-RpS12-Gateway", "sequence-type": "depositor-full", "addgene_id": "71508", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13994", + "https://www.ncbi.nlm.nih.gov/pubmed/25517091" + ], "kit": null, "att_sites": [ "attR1", @@ -306428,7 +325059,10 @@ "plasmid_name": "RBM22", "sequence-type": "addgene-full", "addgene_id": "155889", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -306471,7 +325105,6 @@ "plasmid_name": "pENTRY4_ CUL3", "sequence-type": "addgene-full", "addgene_id": "126903", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -306506,7 +325139,10 @@ "plasmid_name": "JK104: pMVP-DEST", "sequence-type": "addgene-full", "addgene_id": "121851", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -306542,7 +325178,10 @@ "plasmid_name": "pDONR223_RNH1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82995", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -306571,7 +325210,10 @@ "plasmid_name": "pDONR223_GALNT14_p.V534F", "sequence-type": "addgene-full", "addgene_id": "81468", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -306603,7 +325245,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-5", "sequence-type": "depositor-full", "addgene_id": "46714", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -306653,7 +325298,10 @@ "plasmid_name": "pMartini Gate C R1-R2", "sequence-type": "depositor-full", "addgene_id": "36435", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "att_sites": [ "attR1", @@ -306692,7 +325340,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a Q", "sequence-type": "addgene-full", "addgene_id": "89386", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -306746,7 +325397,10 @@ "plasmid_name": "pFL-EGFP-3xFlag-Fml1", "sequence-type": "addgene-full", "addgene_id": "193058", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111749", + "https://www.ncbi.nlm.nih.gov/pubmed/36476850" + ], "kit": null, "att_sites": [ "attB1", @@ -306790,7 +325444,10 @@ "plasmid_name": "pBKWH-Lam", "sequence-type": "addgene-full", "addgene_id": "133899", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attB1", @@ -306827,7 +325484,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 N", "sequence-type": "addgene-full", "addgene_id": "149330", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -306857,7 +325517,10 @@ "plasmid_name": "907H1", "sequence-type": "addgene-full", "addgene_id": "160234", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160234.addgene-full.gb" }, @@ -306866,7 +325529,10 @@ "plasmid_name": "actc1b-mKate2-SERCA1", "sequence-type": "addgene-full", "addgene_id": "109498", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -306908,7 +325574,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp6", "sequence-type": "addgene-full", "addgene_id": "168915", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -306937,7 +325606,10 @@ "plasmid_name": "TFORF3051", "sequence-type": "addgene-full", "addgene_id": "144527", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -306997,7 +325669,9 @@ "plasmid_name": "pDONR221 msNLRP3 (STOP)", "sequence-type": "addgene-full", "addgene_id": "218638", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "att_sites": [ "attL1", @@ -307028,7 +325702,9 @@ "plasmid_name": "pMpGWB232", "sequence-type": "depositor-full", "addgene_id": "68623", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -307075,7 +325751,10 @@ "plasmid_name": "pME-AKT-PH", "sequence-type": "depositor-full", "addgene_id": "67674", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attL1", @@ -307106,7 +325785,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.R535Q", "sequence-type": "addgene-full", "addgene_id": "81713", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -307118,7 +325800,10 @@ "plasmid_name": "pCWXPGR-pTF-dnTCF4", "sequence-type": "addgene-full", "addgene_id": "114277", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "att_sites": [ "attB1", @@ -307179,7 +325864,10 @@ "plasmid_name": "A1-LCD-12F+12Y", "sequence-type": "addgene-full", "addgene_id": "178659", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -307214,7 +325902,10 @@ "plasmid_name": "pSLIK Zeo p53DD", "sequence-type": "addgene-full", "addgene_id": "136534", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attB1", @@ -307278,7 +325969,10 @@ "plasmid_name": "pAG416GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14244", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -307336,7 +326030,10 @@ "plasmid_name": "pDONR221-SLC5A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161336", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -307367,7 +326064,6 @@ "plasmid_name": "pENTR-ABCB1_STOP", "sequence-type": "addgene-full", "addgene_id": "221424", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -307398,7 +326094,10 @@ "plasmid_name": "pDONR 221-PHL2 (NON-STOP)", "sequence-type": "addgene-full", "addgene_id": "118682", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attL1", @@ -307429,7 +326128,10 @@ "plasmid_name": "p8141 MSCV-P C-FlagHA 18E7 D10K", "sequence-type": "addgene-full", "addgene_id": "163306", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "att_sites": [ "attB1", @@ -307475,7 +326177,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF8b_nostop", "sequence-type": "addgene-full", "addgene_id": "168541", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -307504,7 +326209,9 @@ "plasmid_name": "pDONR221-MANF", "sequence-type": "addgene-full", "addgene_id": "166184", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -307535,7 +326242,10 @@ "plasmid_name": "TFORF3497", "sequence-type": "addgene-full", "addgene_id": "144973", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -307596,7 +326306,10 @@ "plasmid_name": "pLenti-CreLite", "sequence-type": "addgene-full", "addgene_id": "131786", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.232", + "https://www.ncbi.nlm.nih.gov/pubmed/32745301" + ], "kit": null, "att_sites": [ "attB1", @@ -307664,7 +326377,10 @@ "plasmid_name": "pHAGE-EGFR-E804G", "sequence-type": "addgene-full", "addgene_id": "116247", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -307718,7 +326434,9 @@ "plasmid_name": "pME-myr-mTagBFP2-Flag (JDW 1183)", "sequence-type": "addgene-full", "addgene_id": "224492", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -307753,7 +326471,10 @@ "plasmid_name": "pDONR223_FBXW7_WT", "sequence-type": "addgene-full", "addgene_id": "81973", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -307782,7 +326503,10 @@ "plasmid_name": "pGWT35S-AtOEP7(1-50aa)-VN154", "sequence-type": "addgene-full", "addgene_id": "194045", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "att_sites": [ "attB1", @@ -307827,7 +326551,6 @@ "plasmid_name": "pAM-35s-Slac1-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102390", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -307861,7 +326584,10 @@ "plasmid_name": "TFORF3237", "sequence-type": "addgene-full", "addgene_id": "144713", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -307921,7 +326647,10 @@ "plasmid_name": "actc1b-mKate2-rab3c", "sequence-type": "addgene-full", "addgene_id": "109637", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -307963,7 +326692,10 @@ "plasmid_name": "pHAGE-FGFR4-P788L", "sequence-type": "addgene-full", "addgene_id": "116393", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -308013,7 +326745,9 @@ "plasmid_name": "p3E-P2A-mKate2 no-pA", "sequence-type": "depositor-full", "addgene_id": "80828", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -308048,7 +326782,10 @@ "plasmid_name": "pDONR221-SLC17A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161102", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -308079,7 +326816,10 @@ "plasmid_name": "pDONR221-SLC19A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161199", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -308110,7 +326850,10 @@ "plasmid_name": "pDONR223_KEAP1_p.R204P", "sequence-type": "addgene-full", "addgene_id": "82841", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL2" @@ -308137,7 +326880,10 @@ "plasmid_name": "pLX301-KANK1", "sequence-type": "addgene-full", "addgene_id": "121985", - "references": [], + "references": [ + "https://doi.org/10.1038/srep46392", + "https://www.ncbi.nlm.nih.gov/pubmed/28436992" + ], "kit": null, "att_sites": [ "attB1", @@ -308198,7 +326944,6 @@ "plasmid_name": "R777-E116 Hs.KRAS-nostop", "sequence-type": "addgene-full", "addgene_id": "70400", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -308227,7 +326972,10 @@ "plasmid_name": "TFORF3312", "sequence-type": "addgene-full", "addgene_id": "144788", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -308287,7 +327035,10 @@ "plasmid_name": "pWS-TK6", "sequence-type": "addgene-full", "addgene_id": "20350", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "att_sites": [ "attR1", @@ -308327,7 +327078,10 @@ "plasmid_name": "pHAGE-EGFR-T354M", "sequence-type": "addgene-full", "addgene_id": "116308", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -308376,7 +327130,10 @@ "plasmid_name": "pMLS715", "sequence-type": "addgene-full", "addgene_id": "188887", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "att_sites": [ "attR3", @@ -308408,7 +327165,10 @@ "plasmid_name": "MAC-TMPRSS2", "sequence-type": "addgene-full", "addgene_id": "158385", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -308453,7 +327213,10 @@ "plasmid_name": "FERMT1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98333", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -308513,7 +327276,10 @@ "plasmid_name": "pENTR D-TOPO-C3_22", "sequence-type": "depositor-full", "addgene_id": "60267", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -308544,7 +327310,10 @@ "plasmid_name": "pDONR221-SLC30A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161279", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -308575,7 +327344,10 @@ "plasmid_name": "pDONR221-kcnj21", "sequence-type": "addgene-full", "addgene_id": "173151", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -308606,7 +327378,10 @@ "plasmid_name": "pDestTol2-actinb-kcna1a-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164965", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB1", @@ -308653,7 +327428,10 @@ "plasmid_name": "pDONR221-SLC30A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161453", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -308684,7 +327462,10 @@ "plasmid_name": "p5Eclec14aE1", "sequence-type": "addgene-full", "addgene_id": "90117", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -308715,7 +327496,10 @@ "plasmid_name": "pGL4_EGR1p-BC0143-luc2", "sequence-type": "addgene-full", "addgene_id": "214648", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -308759,7 +327543,10 @@ "plasmid_name": "pINDUCER-21-RUNX1-P2A-ERG", "sequence-type": "addgene-full", "addgene_id": "97045", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "att_sites": [ "attB1", @@ -308815,7 +327602,10 @@ "plasmid_name": "pMH-MBP", "sequence-type": "addgene-full", "addgene_id": "101768", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "att_sites": [ "attR1", @@ -308864,7 +327654,6 @@ "plasmid_name": "MECP2 - A202G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216598", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -308894,7 +327683,10 @@ "plasmid_name": "pHAGE-PIK3CA-P449_N457delPHGLEDLLN", "sequence-type": "addgene-full", "addgene_id": "116522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -308948,7 +327740,10 @@ "plasmid_name": "pDONR223-ZAP70", "sequence-type": "addgene-full", "addgene_id": "23887", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -308960,7 +327755,10 @@ "plasmid_name": "MAC_N_LHX4", "sequence-type": "addgene-full", "addgene_id": "167778", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -309005,7 +327803,10 @@ "plasmid_name": "pDONR223_A4GALT_p.A272V", "sequence-type": "addgene-full", "addgene_id": "81396", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -309037,7 +327838,10 @@ "plasmid_name": "pCFJ2438 - [1-2] ENTR - Fluor - ce-mCardinal((PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159862", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -309068,7 +327872,10 @@ "plasmid_name": "pGWB440", "sequence-type": "depositor-full", "addgene_id": "74826", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -309119,7 +327926,6 @@ "plasmid_name": "pAG426GAL-CV-B3_3C", "sequence-type": "addgene-full", "addgene_id": "203499", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -309172,7 +327978,10 @@ "plasmid_name": "pDONR221_SLC6A19", "sequence-type": "addgene-full", "addgene_id": "132231", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -309203,7 +328012,10 @@ "plasmid_name": "pHAGE-RAF1-R164Q", "sequence-type": "addgene-full", "addgene_id": "116659", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -309257,7 +328069,6 @@ "plasmid_name": "R777-E033 Hs.DUSP1", "sequence-type": "depositor-full", "addgene_id": "70317", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -309285,7 +328096,10 @@ "plasmid_name": "pPB-cT3G-cERP2-HOXC9", "sequence-type": "addgene-full", "addgene_id": "192910", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -309331,7 +328145,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV PrM", "sequence-type": "addgene-full", "addgene_id": "145340", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145340.addgene-full.gb" }, @@ -309340,7 +328157,10 @@ "plasmid_name": "C417-E06: attB4-polyhedrinp>MBP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162935", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -309377,7 +328197,10 @@ "plasmid_name": "pAC150-KEIMA-RAMP4", "sequence-type": "addgene-full", "addgene_id": "201929", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "att_sites": [ "attB1", @@ -309433,7 +328256,10 @@ "plasmid_name": "pBoPyV3-S23", "sequence-type": "depositor-full", "addgene_id": "62369", - "references": [], + "references": [ + "https://doi.org/10.1099/vir.0.000033", + "https://www.ncbi.nlm.nih.gov/pubmed/25568187" + ], "kit": null, "att_sites": [ "attL1", @@ -309458,7 +328284,10 @@ "plasmid_name": "R725-X11-566: His6-MBP-tev-Hs.LGALS3", "sequence-type": "addgene-full", "addgene_id": "159699", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.005669", + "https://www.ncbi.nlm.nih.gov/pubmed/30559287" + ], "kit": null, "att_sites": [ "attB1", @@ -309504,7 +328333,10 @@ "plasmid_name": "pDONR223_HRAS_p.G12V", "sequence-type": "addgene-full", "addgene_id": "82090", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -309537,7 +328369,6 @@ "plasmid_name": "pg-nucODD-EGFP", "sequence-type": "addgene-full", "addgene_id": "87212", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -309579,7 +328410,10 @@ "plasmid_name": "p3E NWASP-CA", "sequence-type": "addgene-full", "addgene_id": "105968", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "att_sites": [ "attL3", @@ -309610,7 +328444,10 @@ "plasmid_name": "R711-X04-566: His6-MBP-tev-Hs.NF1iso2 (1198-1530)", "sequence-type": "addgene-full", "addgene_id": "159579", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.107909", + "https://www.ncbi.nlm.nih.gov/pubmed/32697994" + ], "kit": null, "att_sites": [ "attB1", @@ -309656,7 +328493,10 @@ "plasmid_name": "pHAGE-TAOK1__PIPOX", "sequence-type": "addgene-full", "addgene_id": "116839", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -309707,7 +328547,10 @@ "plasmid_name": "pTol2pA2-ubb:secHsa.ANNEXINV-mVenus, cryaa:RFP", "sequence-type": "addgene-full", "addgene_id": "92388", - "references": [], + "references": [ + "https://doi.org/10.3389/fncel.2015.00321", + "https://www.ncbi.nlm.nih.gov/pubmed/26379496" + ], "kit": null, "att_sites": [ "attB1", @@ -309754,7 +328597,10 @@ "plasmid_name": "pDONR221_SLC25A34", "sequence-type": "addgene-full", "addgene_id": "132005", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -309785,7 +328631,10 @@ "plasmid_name": "pENTR221-JUN", "sequence-type": "addgene-full", "addgene_id": "79512", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attB1", @@ -309820,7 +328669,10 @@ "plasmid_name": "pCPP5534", "sequence-type": "addgene-full", "addgene_id": "128723", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -309851,7 +328703,10 @@ "plasmid_name": "pAG425GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14370", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -309863,7 +328718,10 @@ "plasmid_name": "pDN0605 (pDEST-DHFR F[1,2] N-term, NatR)", "sequence-type": "addgene-full", "addgene_id": "210487", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "att_sites": [ "attR1", @@ -309915,7 +328773,10 @@ "plasmid_name": "pGWB526", "sequence-type": "depositor-full", "addgene_id": "74868", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -309963,7 +328824,10 @@ "plasmid_name": "pAD-CMV-Caveolin1-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83272", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2013.06.017", + "https://www.ncbi.nlm.nih.gov/pubmed/23850288" + ], "kit": null, "att_sites": [ "attB1", @@ -310005,7 +328869,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::venus-RfA", "sequence-type": "addgene-full", "addgene_id": "186408", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -310053,7 +328920,10 @@ "plasmid_name": "pHAGE-BAI3", "sequence-type": "addgene-full", "addgene_id": "116716", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -310103,7 +328973,10 @@ "plasmid_name": "pGC247", "sequence-type": "depositor-full", "addgene_id": "19634", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19634.depositor-full.gb" }, @@ -310112,7 +328985,10 @@ "plasmid_name": "pE1c", "sequence-type": "depositor-full", "addgene_id": "17461", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -310137,7 +329013,6 @@ "plasmid_name": "R777-E075 Hs.EXOC5", "sequence-type": "depositor-full", "addgene_id": "70359", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -310149,7 +329024,10 @@ "plasmid_name": "tetO-TCF21", "sequence-type": "addgene-full", "addgene_id": "170706", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -310211,7 +329089,10 @@ "plasmid_name": "pENTR4_G3BP1", "sequence-type": "addgene-full", "addgene_id": "127104", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.12.024", + "https://www.ncbi.nlm.nih.gov/pubmed/31981475" + ], "kit": null, "att_sites": [ "attL1", @@ -310242,7 +329123,6 @@ "plasmid_name": "IDG_TMEM63A_OE_1", "sequence-type": "addgene-full", "addgene_id": "161667", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -310301,7 +329181,6 @@ "plasmid_name": "pENTR-R2L3-cmER-IRESpuro-pA", "sequence-type": "addgene-full", "addgene_id": "139539", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -310340,7 +329219,10 @@ "plasmid_name": "pEXP(V5_H2B_APEX2)", "sequence-type": "addgene-full", "addgene_id": "107597", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-018-0220-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30478324" + ], "kit": null, "att_sites": [ "attB1", @@ -310386,7 +329268,10 @@ "plasmid_name": "pME-QF2w-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155117", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "att_sites": [ "attL1", @@ -310420,7 +329305,10 @@ "plasmid_name": "pCAG/ATP8A1-HA", "sequence-type": "addgene-full", "addgene_id": "209208", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -310464,7 +329352,10 @@ "plasmid_name": "FLAG NC", "sequence-type": "addgene-full", "addgene_id": "214675", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-023-02014-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38168984" + ], "kit": null, "att_sites": [ "attB1", @@ -310508,7 +329399,10 @@ "plasmid_name": "pDONR223_MAP3K8_WT", "sequence-type": "addgene-full", "addgene_id": "82202", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -310537,7 +329431,10 @@ "plasmid_name": "Flag-HA-USP2", "sequence-type": "addgene-full", "addgene_id": "22577", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -310582,7 +329479,10 @@ "plasmid_name": "pENTR1A FKBP12F36V-OGT", "sequence-type": "addgene-full", "addgene_id": "154287", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "att_sites": [ "attB1", @@ -310610,7 +329510,10 @@ "plasmid_name": "pDONR-IAA8", "sequence-type": "depositor-full", "addgene_id": "83873", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -310641,7 +329544,10 @@ "plasmid_name": "pDONR221_SLC39A8", "sequence-type": "addgene-full", "addgene_id": "132177", - "references": [], + "references": [ + "https://doi.org/10.1007/s10534-022-00474-6", + "https://www.ncbi.nlm.nih.gov/pubmed/36454509" + ], "kit": null, "att_sites": [ "attL1", @@ -310672,7 +329578,10 @@ "plasmid_name": "pSBDEST.B", "sequence-type": "addgene-full", "addgene_id": "79460", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attR1", @@ -310724,7 +329633,9 @@ "plasmid_name": "Shim_CytC_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202646", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "att_sites": [ "attB1", @@ -310763,7 +329674,10 @@ "plasmid_name": "pDONR221_SV2C", "sequence-type": "addgene-full", "addgene_id": "132297", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -310794,7 +329708,9 @@ "plasmid_name": "p3E-FRB(KTF)-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82596", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -310826,7 +329742,10 @@ "plasmid_name": "pCFJ66", "sequence-type": "depositor-full", "addgene_id": "24981", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1454", + "https://www.ncbi.nlm.nih.gov/pubmed/20418868" + ], "kit": null, "att_sites": [ "attL1", @@ -310861,7 +329780,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP5", "sequence-type": "addgene-full", "addgene_id": "169380", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -310904,7 +329822,10 @@ "plasmid_name": "MAC_N_ELF1", "sequence-type": "addgene-full", "addgene_id": "167745", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -310949,7 +329870,10 @@ "plasmid_name": "pXL-CAG-3XAP-NLG1", "sequence-type": "depositor-full", "addgene_id": "43923", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0052823", + "https://www.ncbi.nlm.nih.gov/pubmed/23457442" + ], "kit": null, "att_sites": [ "attB1", @@ -310996,7 +329920,10 @@ "plasmid_name": "pGWT35S-Citrine", "sequence-type": "addgene-full", "addgene_id": "182581", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "att_sites": [ "attB1", @@ -311042,7 +329969,10 @@ "plasmid_name": "pDONR223_ELF3_p.A332V", "sequence-type": "addgene-full", "addgene_id": "81330", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -311074,7 +330004,10 @@ "plasmid_name": "pDONR223_RAC1_p.T17N", "sequence-type": "addgene-full", "addgene_id": "82179", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -311104,7 +330037,10 @@ "plasmid_name": "pHAGE-PIK3R1-D464N", "sequence-type": "addgene-full", "addgene_id": "116584", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -311155,7 +330091,6 @@ "plasmid_name": "R777-E285 Hs.ROCK2", "sequence-type": "depositor-full", "addgene_id": "70569", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -311183,7 +330118,10 @@ "plasmid_name": "pHAGE-RET-A641T", "sequence-type": "addgene-full", "addgene_id": "116664", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -311237,7 +330175,10 @@ "plasmid_name": "pGMEH-T38M-750-luxAB-DAS+4", "sequence-type": "depositor-full", "addgene_id": "49520", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "att_sites": [ "attB1", @@ -311272,7 +330213,10 @@ "plasmid_name": "pRATIO1112", "sequence-type": "addgene-full", "addgene_id": "141066", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -311327,7 +330271,10 @@ "plasmid_name": "pCM1.56", "sequence-type": "depositor-full", "addgene_id": "17251", - "references": [], + "references": [ + "https://doi.org/10.1895/wormbook.1.148.1", + "https://www.ncbi.nlm.nih.gov/pubmed/20169625" + ], "kit": null, "att_sites": [ "attL4", @@ -311357,7 +330304,10 @@ "plasmid_name": "bArr2-V5", "sequence-type": "addgene-full", "addgene_id": "201494", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2023.105107", + "https://www.ncbi.nlm.nih.gov/pubmed/37517699" + ], "kit": null, "att_sites": [ "attB1", @@ -311417,7 +330367,10 @@ "plasmid_name": "C232-E34: attB2r-iRFP670-attB3", "sequence-type": "addgene-full", "addgene_id": "162908", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -311445,7 +330398,10 @@ "plasmid_name": "pKI-cjPLP1e2-P15L", "sequence-type": "addgene-full", "addgene_id": "129753", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-018-37990-w", + "https://www.ncbi.nlm.nih.gov/pubmed/30728412" + ], "kit": null, "att_sites": [ "attB1", @@ -311491,7 +330447,10 @@ "plasmid_name": "pDONR223_CSNK1E_WT", "sequence-type": "addgene-full", "addgene_id": "82299", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -311520,7 +330479,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MKNK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170594", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -311586,7 +330544,10 @@ "plasmid_name": "pDONR221 Ub-NLRP1 S1213", "sequence-type": "addgene-full", "addgene_id": "166827", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -311618,7 +330579,10 @@ "plasmid_name": "1132 pME-Lin28", "sequence-type": "depositor-full", "addgene_id": "49009", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "att_sites": [ "attL1", @@ -311649,7 +330613,10 @@ "plasmid_name": "pHAGE-PDGFRA-P577T", "sequence-type": "addgene-full", "addgene_id": "116450", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -311699,7 +330666,10 @@ "plasmid_name": "keratin 8 (krt8)-H2B-RFP", "sequence-type": "addgene-full", "addgene_id": "105955", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.08.062", + "https://www.ncbi.nlm.nih.gov/pubmed/26411683" + ], "kit": null, "att_sites": [ "attB1", @@ -311749,7 +330719,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP5 Cys146Ala", "sequence-type": "addgene-full", "addgene_id": "154028", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -311778,7 +330751,10 @@ "plasmid_name": "R989-X12-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) Q61L", "sequence-type": "addgene-full", "addgene_id": "159544", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -311824,7 +330800,6 @@ "plasmid_name": "pBabe-EGFP-Hu_Plk1(WT)", "sequence-type": "addgene-full", "addgene_id": "136323", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -311860,7 +330835,10 @@ "plasmid_name": "pET-DEST42-dre4", "sequence-type": "addgene-full", "addgene_id": "170440", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.05.099", + "https://www.ncbi.nlm.nih.gov/pubmed/31242411" + ], "kit": null, "att_sites": [ "attB1", @@ -311899,7 +330877,10 @@ "plasmid_name": "pCMU-PDESr", "sequence-type": "depositor-full", "addgene_id": "61206", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -311945,7 +330926,10 @@ "plasmid_name": "pYPQ266E", "sequence-type": "addgene-full", "addgene_id": "161521", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-00827-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33398158" + ], "kit": null, "att_sites": [ "attL1", @@ -311981,7 +330965,6 @@ "plasmid_name": "pLenti Lifeact-mRuby2 PuroR", "sequence-type": "addgene-full", "addgene_id": "84386", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -312047,7 +331030,10 @@ "plasmid_name": "pDONR221_SLC25A13", "sequence-type": "addgene-full", "addgene_id": "132038", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -312078,7 +331064,10 @@ "plasmid_name": "HA-BirA*-pDEST-N-pcDNA5/FRT/TO", "sequence-type": "addgene-full", "addgene_id": "118375", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attR1", @@ -312127,7 +331116,10 @@ "plasmid_name": "pHAGE-XPO1", "sequence-type": "addgene-full", "addgene_id": "116804", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -312179,7 +331171,6 @@ "plasmid_name": "pDONR221-TMPRSS4", "sequence-type": "addgene-full", "addgene_id": "158446", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -312209,7 +331200,10 @@ "plasmid_name": "THOC4", "sequence-type": "addgene-full", "addgene_id": "156083", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -312252,7 +331246,10 @@ "plasmid_name": "pAG303-Gal-GA50", "sequence-type": "depositor-full", "addgene_id": "84907", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "att_sites": [ "attB1", @@ -312304,7 +331301,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Cas12j2", "sequence-type": "addgene-full", "addgene_id": "173926", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2022.100453", + "https://www.ncbi.nlm.nih.gov/pubmed/36127876" + ], "kit": null, "att_sites": [ "attL2", @@ -312334,7 +331334,6 @@ "plasmid_name": "R777-E243 Hs.RASGRP1", "sequence-type": "depositor-full", "addgene_id": "70527", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -312362,7 +331361,10 @@ "plasmid_name": "pAG423GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14294", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -312424,7 +331426,6 @@ "plasmid_name": "p667-UBC-CDC42BPB-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198008", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -312489,7 +331490,10 @@ "plasmid_name": "MAC_C_TR61B", "sequence-type": "addgene-full", "addgene_id": "111679", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -312534,7 +331538,9 @@ "plasmid_name": "p3E p2a-tomato", "sequence-type": "addgene-full", "addgene_id": "135211", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "att_sites": [ "attL3", @@ -312567,7 +331573,10 @@ "plasmid_name": "p5E_unc503", "sequence-type": "addgene-full", "addgene_id": "64020", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22385", + "https://www.ncbi.nlm.nih.gov/pubmed/23444339" + ], "kit": null, "att_sites": [ "attL4", @@ -312598,7 +331607,10 @@ "plasmid_name": "pRU324", "sequence-type": "addgene-full", "addgene_id": "167691", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167691.addgene-full.gb" }, @@ -312607,7 +331619,10 @@ "plasmid_name": "pWZL Neo Myr Flag GK", "sequence-type": "addgene-full", "addgene_id": "20493", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -312648,7 +331663,10 @@ "plasmid_name": "pMx/ATP11A-HA", "sequence-type": "addgene-full", "addgene_id": "209235", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -312683,7 +331701,10 @@ "plasmid_name": "pDONR221_SLC10A1", "sequence-type": "addgene-full", "addgene_id": "131907", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131907.addgene-full.gb" }, @@ -312692,7 +331713,10 @@ "plasmid_name": "pHAGE-ESR1-Y537C", "sequence-type": "addgene-full", "addgene_id": "116372", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116372.addgene-full.gb" }, @@ -312701,7 +331725,10 @@ "plasmid_name": "TFORF3370", "sequence-type": "addgene-full", "addgene_id": "144846", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -312761,7 +331788,10 @@ "plasmid_name": "pEBTetBl-CLIP-Centrin3", "sequence-type": "addgene-full", "addgene_id": "136855", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -312806,7 +331836,10 @@ "plasmid_name": "pAG413GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14358", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -312865,7 +331898,10 @@ "plasmid_name": "LIMD1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98349", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98349.addgene-full.gb" }, @@ -312874,7 +331910,10 @@ "plasmid_name": "pSGE_716_S2-1_GATA-to-DFD", "sequence-type": "depositor-full", "addgene_id": "71173", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -312907,7 +331946,10 @@ "plasmid_name": "pDONR223_FAM116A_p.R427H", "sequence-type": "addgene-full", "addgene_id": "81626", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -312939,7 +331981,10 @@ "plasmid_name": "pENTR L1-20XUAS-R5", "sequence-type": "depositor-full", "addgene_id": "32302", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attL1", @@ -312973,7 +332018,9 @@ "plasmid_name": "p5E-EF1a (JDW 1164)", "sequence-type": "addgene-full", "addgene_id": "224473", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -313011,7 +332058,6 @@ "plasmid_name": "R777-E087 Hs.FGFR3", "sequence-type": "depositor-full", "addgene_id": "70371", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -313039,7 +332085,10 @@ "plasmid_name": "TFORF2936", "sequence-type": "addgene-full", "addgene_id": "144412", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -313099,7 +332148,6 @@ "plasmid_name": "UBI10:RFP-RabG3B-CA", "sequence-type": "addgene-full", "addgene_id": "102371", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -313139,7 +332187,10 @@ "plasmid_name": "actc1b-mKate2-ARF1-DN", "sequence-type": "addgene-full", "addgene_id": "109536", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -313181,7 +332232,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP13", "sequence-type": "addgene-full", "addgene_id": "158364", - 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"references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -313410,7 +332468,10 @@ "plasmid_name": "pDONR221-SLC35G3_STOP", "sequence-type": "addgene-full", "addgene_id": "161298", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -313441,7 +332502,10 @@ "plasmid_name": "5'-3xFLAG Camta2-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212048", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -313481,7 +332545,10 @@ "plasmid_name": "pDONR223_ASCL4_WT", "sequence-type": "addgene-full", "addgene_id": "81909", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -313513,7 +332580,10 @@ "plasmid_name": "hDAGLa-V5", "sequence-type": "addgene-full", "addgene_id": "87676", - "references": [], + "references": [ + "https://doi.org/10.1042/BSR20160073", + "https://www.ncbi.nlm.nih.gov/pubmed/27013337" + ], "kit": null, "att_sites": [ "attB1", @@ -313563,7 +332633,10 @@ "plasmid_name": "pYPQ230-RR", "sequence-type": "addgene-full", "addgene_id": "108860", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "att_sites": [ "attL1", @@ -313595,7 +332668,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-IBB", "sequence-type": "addgene-full", "addgene_id": "192314", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192314.addgene-full.gb" }, @@ -313604,7 +332680,10 @@ "plasmid_name": "TFORF3293", "sequence-type": "addgene-full", "addgene_id": "144769", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -313664,7 +332743,10 @@ "plasmid_name": "pENTR-ZmIAA8\u0394PB1", "sequence-type": "addgene-full", "addgene_id": "188432", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -313695,7 +332777,10 @@ "plasmid_name": "pDONR223_TCF7L2_WT", "sequence-type": "addgene-full", "addgene_id": "81769", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -313724,7 +332809,10 @@ "plasmid_name": "pENTR4-V5-2-Ubc9 (w345-2)", "sequence-type": "depositor-full", "addgene_id": "17407", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -313749,7 +332837,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBE2QL1-Strep/HA", "sequence-type": "addgene-full", "addgene_id": "124666", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "att_sites": [ "attB1", @@ -313793,7 +332884,10 @@ "plasmid_name": "pAG416GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14316", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -313854,7 +332948,10 @@ "plasmid_name": "pCLX-UBI-Tred", "sequence-type": "depositor-full", "addgene_id": "27246", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "att_sites": [ "attB1", @@ -313906,7 +333003,10 @@ "plasmid_name": "pEN_TTmcs", "sequence-type": "depositor-full", "addgene_id": "25755", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0606179103", + "https://www.ncbi.nlm.nih.gov/pubmed/16945906" + ], "kit": null, "att_sites": [ "attL1", @@ -313936,7 +333036,10 @@ "plasmid_name": "pCM1.122", "sequence-type": "depositor-full", "addgene_id": "21383", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL4", @@ -313967,7 +333070,9 @@ "plasmid_name": "pLenti UBC hNLRP3-mNG", "sequence-type": "addgene-full", "addgene_id": "218642", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "att_sites": [ "attB1", @@ -314029,7 +333134,10 @@ "plasmid_name": "pCMB-TGNVHAr", "sequence-type": "depositor-full", "addgene_id": "61179", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -314075,7 +333183,10 @@ "plasmid_name": "TFORF3433", "sequence-type": "addgene-full", "addgene_id": "144909", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1" @@ -314133,7 +333244,10 @@ "plasmid_name": "pENTR-AtTAS1c-D2-B/c", "sequence-type": "addgene-full", "addgene_id": "137883", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkaa343", + "https://www.ncbi.nlm.nih.gov/pubmed/32396204" + ], "kit": null, "att_sites": [ "attL1", @@ -314169,7 +333283,10 @@ "plasmid_name": "pDONR223_DOK1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82974", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -314198,7 +333315,10 @@ "plasmid_name": "TFORF3547", "sequence-type": "depositor-full", "addgene_id": "145023", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -314258,7 +333378,10 @@ "plasmid_name": "pDONR223_KIF2B_WT", "sequence-type": "addgene-full", "addgene_id": "81489", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -314290,7 +333413,10 @@ "plasmid_name": "IX104: pMVP (L5-L4) myc epitope tag", "sequence-type": "addgene-full", "addgene_id": "121704", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -314323,7 +333449,10 @@ "plasmid_name": "pENTR223-BPLF1_1501-2500", "sequence-type": "addgene-full", "addgene_id": "198585", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -314352,7 +333481,10 @@ "plasmid_name": "pDEST47-ARL8B-GFP", "sequence-type": "addgene-full", "addgene_id": "67404", - "references": [], + "references": [ + "https://doi.org/10.1080/21592799.2015.1090523", + "https://www.ncbi.nlm.nih.gov/pubmed/27057421" + ], "kit": null, "att_sites": [ "attB1", @@ -314404,7 +333536,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.L37H", "sequence-type": "addgene-full", "addgene_id": "81412", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -314436,7 +333571,9 @@ "plasmid_name": "pENTR1a-mCherry-STIM1", "sequence-type": "addgene-full", "addgene_id": "114176", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29176619" + ], "kit": null, "att_sites": [ "attL1", @@ -314463,7 +333600,10 @@ "plasmid_name": "TFORF3150", "sequence-type": "addgene-full", "addgene_id": "144626", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -314523,7 +333663,10 @@ "plasmid_name": "p3E-rab39bb", "sequence-type": "addgene-full", "addgene_id": "109702", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -314554,7 +333697,10 @@ "plasmid_name": "p3E-DrCav1", "sequence-type": "addgene-full", "addgene_id": "194290", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "att_sites": [ "attL3", @@ -314585,7 +333731,10 @@ "plasmid_name": "CRYZL1_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177004", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -314633,7 +333782,9 @@ "plasmid_name": "pDONR221-DDX5\u0394IDR", "sequence-type": "addgene-full", "addgene_id": "166165", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -314664,7 +333815,10 @@ "plasmid_name": "pHAGE-BRAF-G464E", "sequence-type": "addgene-full", "addgene_id": "116146", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -314719,7 +333873,10 @@ "plasmid_name": "pcDNA3.2 V5-DEST mir-1-1 reporter", "sequence-type": "depositor-full", "addgene_id": "46646", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attR1", @@ -314774,7 +333931,10 @@ "plasmid_name": "pDONR223 MERS-CoV NSP15_stop", "sequence-type": "addgene-full", "addgene_id": "168640", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -314803,7 +333963,10 @@ "plasmid_name": "pYPQ230-STU", "sequence-type": "addgene-full", "addgene_id": "138110", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -314835,7 +333998,10 @@ "plasmid_name": "pWPI-E2F1", "sequence-type": "addgene-full", "addgene_id": "114296", - "references": [], + "references": [ + "https://doi.org/10.4161/cc.25834", + "https://www.ncbi.nlm.nih.gov/pubmed/23907129" + ], "kit": null, "att_sites": [ "attB1", @@ -314893,7 +334059,10 @@ "plasmid_name": "pDONR223_OR2G6_WT", "sequence-type": "addgene-full", "addgene_id": "81846", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -314925,7 +334094,10 @@ "plasmid_name": "pEF-ENTR A (696-6)", "sequence-type": "addgene-full", "addgene_id": "17427", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -314956,7 +334128,9 @@ "plasmid_name": "pENTR1a-CRISPRoffv2.1", "sequence-type": "addgene-full", "addgene_id": "207174", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "att_sites": [ "attL1", @@ -314985,7 +334159,6 @@ "plasmid_name": "pAG1guide_RUBY_EggCas9", "sequence-type": "addgene-full", "addgene_id": "225983", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -315022,7 +334195,10 @@ "plasmid_name": "pcDNA3_SP-GLP1R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194379", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -315079,7 +334255,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-N-mCherry", "sequence-type": "addgene-full", "addgene_id": "223948", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -315130,7 +334305,10 @@ "plasmid_name": "CSIV-TRE-ASCL1", "sequence-type": "addgene-full", "addgene_id": "154883", - "references": [], + "references": [ + "https://doi.org/10.3390/cells10010006", + "https://www.ncbi.nlm.nih.gov/pubmed/33375083" + ], "kit": null, "att_sites": [ "attB1", @@ -315187,7 +334365,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep72", "sequence-type": "addgene-full", "addgene_id": "136868", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -315232,7 +334413,10 @@ "plasmid_name": "pDONR223_TPK1_p.G48C", "sequence-type": "addgene-full", "addgene_id": "82806", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -315261,7 +334445,10 @@ "plasmid_name": "SLC25A1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98374", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -315321,7 +334508,6 @@ "plasmid_name": "pENTR1A-Huwe1 C4341S", "sequence-type": "depositor-full", "addgene_id": "37432", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -315345,7 +334531,6 @@ "plasmid_name": "R777-E011 Hs.ARHGAP35", "sequence-type": "depositor-full", "addgene_id": "70295", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -315374,7 +334559,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM E274R", "sequence-type": "addgene-full", "addgene_id": "169984", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attB1", @@ -315426,7 +334614,10 @@ "plasmid_name": "p3E-ARF1-DN", "sequence-type": "addgene-full", "addgene_id": "109590", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -315457,7 +334648,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP8", "sequence-type": "addgene-full", "addgene_id": "158359", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -315502,7 +334696,10 @@ "plasmid_name": "pAC91-pmax-dCas9VP64", "sequence-type": "depositor-full", "addgene_id": "48223", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attB1", @@ -315535,7 +334732,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168886", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -315564,7 +334764,10 @@ "plasmid_name": "5'-3xFLAG Smarcc2+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212075", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -315604,7 +334807,10 @@ "plasmid_name": "pDONR221-ZNF233", "sequence-type": "depositor-full", "addgene_id": "101558", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -315635,7 +334841,10 @@ "plasmid_name": "pEZYpci", "sequence-type": "depositor-full", "addgene_id": "18707", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "att_sites": [ "attR1", @@ -315674,7 +334883,10 @@ "plasmid_name": "pDONR223_THEMIS_p.H366Q", "sequence-type": "addgene-full", "addgene_id": "81560", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -315686,7 +334898,10 @@ "plasmid_name": "pDONR221-SLC25A16_STOP", "sequence-type": "addgene-full", "addgene_id": "161145", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -315717,7 +334932,10 @@ "plasmid_name": "MLKP2delKASH", "sequence-type": "addgene-full", "addgene_id": "130838", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attB1", @@ -315753,7 +334971,10 @@ "plasmid_name": "R619-M91-303: CMV51p> HCoV-NL63 S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166017", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -315810,7 +335031,10 @@ "plasmid_name": "pSLIK 3xFLAG-KPNA1 zeo", "sequence-type": "addgene-full", "addgene_id": "192329", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -315875,7 +335099,10 @@ "plasmid_name": "pLenti CMV TRE3G Neo GFP-Progerin C661S", "sequence-type": "addgene-full", "addgene_id": "118711", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.08.024", + "https://www.ncbi.nlm.nih.gov/pubmed/26341717" + ], "kit": null, "att_sites": [ "attB1", @@ -315941,7 +335168,10 @@ "plasmid_name": "p3E-rab15", "sequence-type": "addgene-full", "addgene_id": "109670", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -315972,7 +335202,10 @@ "plasmid_name": "TFORF3278", "sequence-type": "addgene-full", "addgene_id": "144754", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -316032,7 +335265,6 @@ "plasmid_name": "R777-E257 Hs.RASSF3", "sequence-type": "depositor-full", "addgene_id": "70541", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -316060,7 +335292,10 @@ "plasmid_name": "pDONR223_TP53_WT", "sequence-type": "addgene-full", "addgene_id": "81754", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -316072,7 +335307,10 @@ "plasmid_name": "TFORF3084", "sequence-type": "addgene-full", "addgene_id": "144560", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -316132,7 +335370,9 @@ "plasmid_name": "pMpGWB430", "sequence-type": "depositor-full", "addgene_id": "68695", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -316182,7 +335422,10 @@ "plasmid_name": "pGGEV_6'_Linker", "sequence-type": "depositor-full", "addgene_id": "49292", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -316194,7 +335437,10 @@ "plasmid_name": "TFORF3458", "sequence-type": "addgene-full", "addgene_id": "144934", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -316254,7 +335500,10 @@ "plasmid_name": "pHAGE-BRAF-T599A", "sequence-type": "addgene-full", "addgene_id": "116200", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -316309,7 +335558,10 @@ "plasmid_name": "pDONR221_SLC16A13", "sequence-type": "addgene-full", "addgene_id": "131875", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -316340,7 +335592,10 @@ "plasmid_name": "pLenti6.2_3xFLAG_V5_ mmDdx58_V5", "sequence-type": "addgene-full", "addgene_id": "160108", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -316399,7 +335654,10 @@ "plasmid_name": "TFORF3204", "sequence-type": "addgene-full", "addgene_id": "144680", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -316459,7 +335717,10 @@ "plasmid_name": "KH305: pMVP (R4-R3) \u03b2gal open", "sequence-type": "addgene-full", "addgene_id": "121739", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -316490,7 +335751,10 @@ "plasmid_name": "pDONR223_PSME2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82949", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -316519,7 +335783,10 @@ "plasmid_name": "pDONR221-SLC7A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161091", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -316550,7 +335817,10 @@ "plasmid_name": "pNOC-FLUC", "sequence-type": "addgene-full", "addgene_id": "98140", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.14314", + "https://www.ncbi.nlm.nih.gov/pubmed/30883973" + ], "kit": null, "att_sites": [ "attR1", @@ -316582,7 +335852,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_S-frag5", "sequence-type": "addgene-full", "addgene_id": "169404", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -316624,7 +335893,10 @@ "plasmid_name": "LG002: pMAGIC (L1-R5) mU6::xCas9(3.7) gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121816", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -316657,7 +335929,9 @@ "plasmid_name": "pDONR221-CERS5", "sequence-type": "addgene-full", "addgene_id": "166158", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -316688,7 +335962,10 @@ "plasmid_name": "p7136 pHAGE-P-CMVt-N-HA-GAW-EIF3H", "sequence-type": "addgene-full", "addgene_id": "100148", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -316739,7 +336016,10 @@ "plasmid_name": "A1-LCD+23G-23S", "sequence-type": "addgene-full", "addgene_id": "178685", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -316774,7 +336054,10 @@ "plasmid_name": "pDONR221 Rrp1", "sequence-type": "depositor-full", "addgene_id": "63773", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -316805,7 +336088,9 @@ "plasmid_name": "pPB-cT3G-cERP2-MEIOSIN", "sequence-type": "addgene-full", "addgene_id": "222551", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -316851,7 +336136,10 @@ "plasmid_name": "pEF-DEST51-GOLPH3", "sequence-type": "addgene-full", "addgene_id": "21690", - "references": [], + "references": [ + "https://doi.org/10.1038/nature08109", + "https://www.ncbi.nlm.nih.gov/pubmed/19553991" + ], "kit": null, "att_sites": [ "attB1", @@ -316902,7 +336190,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO-miR-30 L1-R5", "sequence-type": "depositor-full", "addgene_id": "62122", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -316938,7 +336229,10 @@ "plasmid_name": "pGC157", "sequence-type": "depositor-full", "addgene_id": "19682", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attL1", @@ -316969,7 +336263,10 @@ "plasmid_name": "TRAPPC10_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53937", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "att_sites": [ "attB1", @@ -317008,7 +336305,10 @@ "plasmid_name": "pHAGE-IDH1", "sequence-type": "addgene-full", "addgene_id": "116751", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -317058,7 +336358,6 @@ "plasmid_name": "R777-E191 Hs.PRKAA1", "sequence-type": "depositor-full", "addgene_id": "70475", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -317086,7 +336385,10 @@ "plasmid_name": "pDONR223-LMTK2", "sequence-type": "addgene-full", "addgene_id": "23914", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -317118,7 +336420,10 @@ "plasmid_name": "pSC25", "sequence-type": "addgene-full", "addgene_id": "104799", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -317162,7 +336467,6 @@ "plasmid_name": "IDG_KCNG4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161620", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -317221,7 +336525,10 @@ "plasmid_name": "pPPEDs", "sequence-type": "addgene-full", "addgene_id": "162469", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.617553", + "https://www.ncbi.nlm.nih.gov/pubmed/34713247" + ], "kit": null, "att_sites": [ "attR1", @@ -317268,7 +336575,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-MYBBP1A", "sequence-type": "addgene-full", "addgene_id": "38084", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -317313,7 +336623,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-CSNK1E", "sequence-type": "depositor-full", "addgene_id": "38078", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -317359,7 +336672,10 @@ "plasmid_name": "1a138", "sequence-type": "addgene-full", "addgene_id": "177688", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "att_sites": [ "attB1", @@ -317409,7 +336725,10 @@ "plasmid_name": "pDONR221_SLC25A44", "sequence-type": "addgene-full", "addgene_id": "132042", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -317440,7 +336759,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-1", "sequence-type": "depositor-full", "addgene_id": "46696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -317490,7 +336812,6 @@ "plasmid_name": "pDONR221-zgc:110006", "sequence-type": "addgene-full", "addgene_id": "192737", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -317521,7 +336842,10 @@ "plasmid_name": "114_UBI_iCre_crystGFP", "sequence-type": "addgene-full", "addgene_id": "171797", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "att_sites": [ "attB1", @@ -317568,7 +336892,10 @@ "plasmid_name": "pLX304", "sequence-type": "addgene-full", "addgene_id": "25890", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "att_sites": [ "attR1", @@ -317632,7 +336959,10 @@ "plasmid_name": "pDONR221_SLC4A2", "sequence-type": "addgene-full", "addgene_id": "132276", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -317663,7 +336993,6 @@ "plasmid_name": "pETDest", "sequence-type": "addgene-full", "addgene_id": "124245", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -317707,7 +337036,10 @@ "plasmid_name": "pAG416GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14388", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -317768,7 +337100,10 @@ "plasmid_name": "pYPQ301", "sequence-type": "addgene-full", "addgene_id": "205415", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2023.1251903", + "https://www.ncbi.nlm.nih.gov/pubmed/37901282" + ], "kit": null, "att_sites": [ "attL1", @@ -317801,7 +337136,10 @@ "plasmid_name": "pCR8/GW/TOPO-ETV6", "sequence-type": "addgene-full", "addgene_id": "98625", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -317830,7 +337168,10 @@ "plasmid_name": "pDONR223_CBX3_WT", "sequence-type": "addgene-full", "addgene_id": "82103", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -317859,7 +337200,10 @@ "plasmid_name": "C453-E02: attB4-CAGp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162972", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -317886,7 +337230,10 @@ "plasmid_name": "pENTR223-LMP1", "sequence-type": "addgene-full", "addgene_id": "195805", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -317916,7 +337263,10 @@ "plasmid_name": "Flag-HA-USP1", "sequence-type": "addgene-full", "addgene_id": "22596", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -317965,7 +337315,10 @@ "plasmid_name": "pDONR221_SLC6A6", "sequence-type": "addgene-full", "addgene_id": "132196", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -317996,7 +337349,10 @@ "plasmid_name": "pAG416GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14412", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -318057,7 +337413,10 @@ "plasmid_name": "MSCV-N SV40 ST", "sequence-type": "addgene-full", "addgene_id": "37858", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "att_sites": [ "attB1", @@ -318103,7 +337462,10 @@ "plasmid_name": "pHAGE-SRSF2-P95H", "sequence-type": "addgene-full", "addgene_id": "116685", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -318157,7 +337519,10 @@ "plasmid_name": "pLentiPGK Puro DEST JNKKTRClover", "sequence-type": "depositor-full", "addgene_id": "59151", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59151.depositor-full.gb" }, @@ -318166,7 +337531,10 @@ "plasmid_name": "p35S::SISOBIR1-YFPn", "sequence-type": "addgene-full", "addgene_id": "86163", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "att_sites": [ "attB1", @@ -318200,7 +337568,10 @@ "plasmid_name": "pT2-cryR;sheCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -318248,7 +337619,10 @@ "plasmid_name": "pAG424GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14175", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -318311,7 +337685,10 @@ "plasmid_name": "pDONR223_SDHA_WT", "sequence-type": "addgene-full", "addgene_id": "82278", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -318340,7 +337717,10 @@ "plasmid_name": "pDONR221-SLCO4C1_STOP", "sequence-type": "addgene-full", "addgene_id": "161414", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -318371,7 +337751,10 @@ "plasmid_name": "pCFJ2560 - pEXP(mosTI, unc-119)[Peft-3 | ceGFP(PATC, NLS) | tbb-2 3'UTR]", "sequence-type": "addgene-full", "addgene_id": "159825", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "att_sites": [ "attB1", @@ -318407,7 +337790,10 @@ "plasmid_name": "tetO-MITF", "sequence-type": "addgene-full", "addgene_id": "170695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -318469,7 +337855,10 @@ "plasmid_name": "pDONR223_CD40_WT", "sequence-type": "addgene-full", "addgene_id": "82198", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -318498,7 +337887,10 @@ "plasmid_name": "pDONR223_ACD_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83001", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -318527,7 +337919,9 @@ "plasmid_name": "pDestTol2-QUAS:GFP-CAAX-he1.1:YFP", "sequence-type": "addgene-full", "addgene_id": "184816", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "att_sites": [ "attB1", @@ -318569,7 +337963,10 @@ "plasmid_name": "p3E ubb polyA", "sequence-type": "addgene-full", "addgene_id": "195977", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL3", @@ -318604,7 +338001,6 @@ "plasmid_name": "R777-E307 Hs.SHC1", "sequence-type": "depositor-full", "addgene_id": "70591", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -318632,7 +338028,10 @@ "plasmid_name": "pGATOR-DTA", "sequence-type": "depositor-full", "addgene_id": "64103", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1312062110", + "https://www.ncbi.nlm.nih.gov/pubmed/24082130" + ], "kit": null, "att_sites": [ "attR1", @@ -318689,7 +338088,10 @@ "plasmid_name": "pAG423GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14222", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -318751,7 +338153,9 @@ "plasmid_name": "pMpGWB317", "sequence-type": "depositor-full", "addgene_id": "68645", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -318797,7 +338201,6 @@ "plasmid_name": "pENTR-R2L3-pA-floxPGKneopA", "sequence-type": "addgene-full", "addgene_id": "139543", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -318841,7 +338244,10 @@ "plasmid_name": "pDONR221-TUSC3", "sequence-type": "addgene-full", "addgene_id": "132304", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -318872,7 +338278,10 @@ "plasmid_name": "pFRT/TO/FLAG/HA-DEST DICER", "sequence-type": "depositor-full", "addgene_id": "19881", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -318918,7 +338327,10 @@ "plasmid_name": "pTRE-HRI-V5-IRES-BFP", "sequence-type": "addgene-full", "addgene_id": "202435", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-22-1230", + "https://www.ncbi.nlm.nih.gov/pubmed/36576405" + ], "kit": null, "att_sites": [ "attB2" @@ -318971,7 +338383,10 @@ "plasmid_name": "pDEST40-2XFL-Src-Y419F", "sequence-type": "addgene-full", "addgene_id": "140317", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -319023,7 +338438,10 @@ "plasmid_name": "pDest-303", "sequence-type": "addgene-full", "addgene_id": "159678", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "att_sites": [ "attR2", @@ -319075,7 +338493,6 @@ "plasmid_name": "p667-UBC-AAK1-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135256", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -319140,7 +338557,10 @@ "plasmid_name": "pLenti-PGK-ER-KRAS(G12V)", "sequence-type": "addgene-full", "addgene_id": "35635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2011.12.033", + "https://www.ncbi.nlm.nih.gov/pubmed/22341439" + ], "kit": null, "att_sites": [ "attB1", @@ -319199,7 +338619,6 @@ "plasmid_name": "pE-mApple L5L2", "sequence-type": "addgene-full", "addgene_id": "187690", - "references": [], "kit": null, "att_sites": [ "attL2", @@ -319232,7 +338651,6 @@ "plasmid_name": "IDG_CACNB4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161686", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -319291,7 +338709,10 @@ "plasmid_name": "mTALEAD nad7-2", "sequence-type": "addgene-full", "addgene_id": "210832", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "att_sites": [ "attB1", @@ -319330,7 +338751,10 @@ "plasmid_name": "pHAGE-IGF1R-P327S", "sequence-type": "addgene-full", "addgene_id": "116417", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -319384,7 +338808,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS9", "sequence-type": "depositor-full", "addgene_id": "20248", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "att_sites": [ "attB1", @@ -319417,7 +338844,6 @@ "plasmid_name": "EFR Y875F (15)", "sequence-type": "addgene-full", "addgene_id": "102414", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -319457,7 +338883,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16-18 E7 Chimera B", "sequence-type": "addgene-full", "addgene_id": "191543", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "att_sites": [ "attB1", @@ -319503,7 +338932,10 @@ "plasmid_name": "PTPRA_C433S-GFP fusion", "sequence-type": "addgene-full", "addgene_id": "139638", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -319550,7 +338982,6 @@ "plasmid_name": "p41Nat MagicFluor", "sequence-type": "depositor-full", "addgene_id": "58563", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -319603,7 +339034,10 @@ "plasmid_name": "pDL200", "sequence-type": "addgene-full", "addgene_id": "175931", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -319627,7 +339061,10 @@ "plasmid_name": "pLenti X2 Puro DEST (w16-1)", "sequence-type": "addgene-full", "addgene_id": "17296", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -319689,7 +339126,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS2_HindIII", "sequence-type": "depositor-full", "addgene_id": "65666", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -319734,7 +339174,10 @@ "plasmid_name": "TFORF3519", "sequence-type": "depositor-full", "addgene_id": "144995", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -319794,7 +339237,10 @@ "plasmid_name": "pdestMB14_grh-1p-grh-1-gfp", "sequence-type": "addgene-full", "addgene_id": "177761", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-27732-4", + "https://www.ncbi.nlm.nih.gov/pubmed/35013237" + ], "kit": null, "att_sites": [ "attB1", @@ -319838,7 +339284,6 @@ "plasmid_name": "pENTR1A-Huwe1", "sequence-type": "addgene-full", "addgene_id": "37431", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -319862,7 +339307,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L5L4", "sequence-type": "addgene-full", "addgene_id": "113741", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -319896,7 +339344,10 @@ "plasmid_name": "pMuLE ENTR MCS L3-L2", "sequence-type": "depositor-full", "addgene_id": "62088", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -319927,7 +339378,10 @@ "plasmid_name": "pCR8/GW/TOPO-SRF", "sequence-type": "addgene-full", "addgene_id": "98618", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -319956,7 +339410,10 @@ "plasmid_name": "MAC_N_STA5A", "sequence-type": "addgene-full", "addgene_id": "167799", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -320001,7 +339458,10 @@ "plasmid_name": "pDONR223_WNT2_p.V334M", "sequence-type": "addgene-full", "addgene_id": "81377", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -320033,7 +339493,10 @@ "plasmid_name": "pCFJ2365 - Intron GG1 - 250bp no PATC", "sequence-type": "addgene-full", "addgene_id": "159883", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -320064,7 +339527,10 @@ "plasmid_name": "GFP-RAB35", "sequence-type": "addgene-full", "addgene_id": "164630", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "att_sites": [ "attB1", @@ -320116,7 +339582,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-GABARAPL2", "sequence-type": "addgene-full", "addgene_id": "175751", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -320167,7 +339636,10 @@ "plasmid_name": "MSCV-N JCV mad1 ER", "sequence-type": "addgene-full", "addgene_id": "37865", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "att_sites": [ "attB1", @@ -320212,7 +339684,10 @@ "plasmid_name": "pT2-CMV/TetO2-EYFP-GW", "sequence-type": "addgene-full", "addgene_id": "153309", - "references": [], + "references": [ + "https://doi.org/10.1016/j.redox.2020.101458", + "https://www.ncbi.nlm.nih.gov/pubmed/32145456" + ], "kit": null, "att_sites": [ "attR1", @@ -320267,7 +339742,6 @@ "plasmid_name": "DDX3X - P324Q in pENTR", "sequence-type": "addgene-full", "addgene_id": "216579", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -320296,7 +339770,10 @@ "plasmid_name": "pENTR2-L3-SfoI-tdTomato-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141021", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL3", @@ -320336,7 +339813,10 @@ "plasmid_name": "pDONR221_SLC38A4", "sequence-type": "addgene-full", "addgene_id": "132130", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132130.addgene-full.gb" }, @@ -320345,7 +339825,6 @@ "plasmid_name": "pcDNA3.1-ccdB-3xHA", "sequence-type": "addgene-full", "addgene_id": "214986", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -320398,7 +339877,10 @@ "plasmid_name": "pDONR221-SLC25A19_STOP", "sequence-type": "addgene-full", "addgene_id": "161429", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -320429,7 +339911,10 @@ "plasmid_name": "pDONR223_SOCS3_WT", "sequence-type": "addgene-full", "addgene_id": "82245", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -320458,7 +339943,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0424-luc2", "sequence-type": "addgene-full", "addgene_id": "214632", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214632.addgene-full.gb" }, @@ -320467,7 +339955,10 @@ "plasmid_name": "BirA-Myc_N_FOXI1", "sequence-type": "addgene-full", "addgene_id": "167702", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -320511,7 +340002,6 @@ "plasmid_name": "pAG416GALL-Bat-CoV-HKU9_3CL", "sequence-type": "addgene-full", "addgene_id": "203478", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -320558,7 +340048,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS-Gln93 hygro", "sequence-type": "addgene-full", "addgene_id": "158635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attB1", @@ -320624,7 +340117,10 @@ "plasmid_name": "pHAGE-PIK3CB-N553S", "sequence-type": "addgene-full", "addgene_id": "116558", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -320679,7 +340175,6 @@ "plasmid_name": "MECP2 - P388S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216602", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -320709,7 +340204,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp9", "sequence-type": "depositor-full", "addgene_id": "168898", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -320738,7 +340236,10 @@ "plasmid_name": "pcDNA5/FRT/TO/MACROD1", "sequence-type": "addgene-full", "addgene_id": "172578", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attB1", @@ -320781,7 +340282,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NN_G1397-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171731", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attL1", @@ -320817,7 +340321,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0372-luc2", "sequence-type": "addgene-full", "addgene_id": "214616", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -320861,7 +340368,10 @@ "plasmid_name": "pT2-cryR;nrp1bCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90149", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -320909,7 +340419,10 @@ "plasmid_name": "pENTR223-CMV-Cre-U6-sgC0111-U6-sgRb1-U6-sgTrp53-U6-sgRbl2", "sequence-type": "addgene-full", "addgene_id": "209062", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-023-01210-z", + "https://www.ncbi.nlm.nih.gov/pubmed/37591951" + ], "kit": null, "att_sites": [ "attB3", @@ -320951,7 +340464,10 @@ "plasmid_name": "p5E-pth2", "sequence-type": "addgene-full", "addgene_id": "191428", - "references": [], + "references": [ + "https://doi.org/10.1242/bio.059432", + "https://www.ncbi.nlm.nih.gov/pubmed/36161311" + ], "kit": null, "att_sites": [ "attL4", @@ -320982,7 +340498,10 @@ "plasmid_name": "pDONR221_SLC2A3", "sequence-type": "addgene-full", "addgene_id": "132114", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -321013,7 +340532,10 @@ "plasmid_name": "Tet-CA-Src-GFP", "sequence-type": "depositor-full", "addgene_id": "83469", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201501025", + "https://www.ncbi.nlm.nih.gov/pubmed/26216901" + ], "kit": null, "att_sites": [ "attB1", @@ -321084,7 +340606,10 @@ "plasmid_name": "pDONR223 LC3B2 WT", "sequence-type": "addgene-full", "addgene_id": "123075", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -321114,7 +340639,10 @@ "plasmid_name": "pDONR223_RARA_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83018", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -321143,7 +340671,10 @@ "plasmid_name": "pGW-GFP-GOI-TurboID", "sequence-type": "addgene-full", "addgene_id": "209382", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "att_sites": [ "attR1", @@ -321195,7 +340726,10 @@ "plasmid_name": "POLN delP_pDEST17", "sequence-type": "depositor-full", "addgene_id": "64886", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M604317200", + "https://www.ncbi.nlm.nih.gov/pubmed/16787914" + ], "kit": null, "att_sites": [ "attB1", @@ -321230,7 +340764,10 @@ "plasmid_name": "BirA-Myc_N_SP1", "sequence-type": "addgene-full", "addgene_id": "167726", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -321274,7 +340811,6 @@ "plasmid_name": "R777-E185 Hs.PLXNB1", "sequence-type": "depositor-full", "addgene_id": "70469", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -321302,7 +340838,10 @@ "plasmid_name": "pDONR223_RHOA_p.Q63L", "sequence-type": "addgene-full", "addgene_id": "82181", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -321332,7 +340871,6 @@ "plasmid_name": "pAG426-GAL-Prepro-3x-Beta-Amyloid", "sequence-type": "addgene-full", "addgene_id": "181730", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -321386,7 +340924,10 @@ "plasmid_name": "p8328 pLIX YAP1 S94A", "sequence-type": "addgene-full", "addgene_id": "184529", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "att_sites": [ "attB1", @@ -321441,7 +340982,10 @@ "plasmid_name": "pDONR223_OR2G6_p.W149C", "sequence-type": "addgene-full", "addgene_id": "81353", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -321473,7 +341017,10 @@ "plasmid_name": "pLentiPGK Puro DEST JNKKTRmCerulean3", "sequence-type": "addgene-full", "addgene_id": "90232", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "att_sites": [ "attB1", @@ -321537,7 +341084,10 @@ "plasmid_name": "GLI1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176968", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -321589,7 +341139,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TSSK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170617", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -321655,7 +341204,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP3", "sequence-type": "addgene-full", "addgene_id": "169378", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -321697,7 +341245,10 @@ "plasmid_name": "MAC_N_ZIC3", "sequence-type": "addgene-full", "addgene_id": "167809", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -321743,7 +341294,10 @@ "plasmid_name": "Active Wnt10B-V5", "sequence-type": "depositor-full", "addgene_id": "43823", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -321791,7 +341345,10 @@ "plasmid_name": "pcDNA5FRT/TO-p37-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113485", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -321835,7 +341392,10 @@ "plasmid_name": "GFP-BRD1", "sequence-type": "addgene-full", "addgene_id": "65375", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -321888,7 +341448,10 @@ "plasmid_name": "pENTR-L1-PGK-PuroTK-L2", "sequence-type": "addgene-full", "addgene_id": "141005", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL1", @@ -321918,7 +341481,10 @@ "plasmid_name": "pDONR223-ZNF768", "sequence-type": "addgene-full", "addgene_id": "88524", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -321947,7 +341513,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-TAOK3", "sequence-type": "addgene-full", "addgene_id": "172993", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -321992,7 +341561,10 @@ "plasmid_name": "pENTR221-TCF7", "sequence-type": "addgene-full", "addgene_id": "79498", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -322029,7 +341601,6 @@ "plasmid_name": "pLenti6.2-Nanoluc-ccdB", "sequence-type": "addgene-full", "addgene_id": "87078", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -322094,7 +341665,10 @@ "plasmid_name": "pDONR P2R-P3-mKate2", "sequence-type": "depositor-full", "addgene_id": "48345", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -322130,7 +341704,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 CC2D", "sequence-type": "addgene-full", "addgene_id": "175775", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -322183,7 +341760,10 @@ "plasmid_name": "pDONR221-SLC38A6_STOP", "sequence-type": "depositor-full", "addgene_id": "161272", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161272.depositor-full.gb" }, @@ -322192,7 +341772,10 @@ "plasmid_name": "1b25", "sequence-type": "addgene-full", "addgene_id": "177691", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "att_sites": [ "attB1", @@ -322242,7 +341825,10 @@ "plasmid_name": "pLEX307-mFzd1", "sequence-type": "addgene-full", "addgene_id": "102864", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "att_sites": [ "attB1", @@ -322299,7 +341885,10 @@ "plasmid_name": "MAC-CTSB", "sequence-type": "addgene-full", "addgene_id": "172413", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -322344,7 +341933,10 @@ "plasmid_name": "pDONR223_OTUD6A_p.R171P", "sequence-type": "addgene-full", "addgene_id": "81287", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -322376,7 +341968,10 @@ "plasmid_name": "pDL110", "sequence-type": "addgene-full", "addgene_id": "175915", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -322400,7 +341995,6 @@ "plasmid_name": "pENTR_Mm_CCNB1(WT)", "sequence-type": "addgene-full", "addgene_id": "136340", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -322431,7 +342025,10 @@ "plasmid_name": "MAC_N_ARPC1B", "sequence-type": "addgene-full", "addgene_id": "111681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -322476,7 +342073,10 @@ "plasmid_name": "pMuLE ENTR SV40 Luc2 (FF-Luciferase) L5-L2", "sequence-type": "depositor-full", "addgene_id": "62170", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -322512,7 +342112,10 @@ "plasmid_name": "W118-1_hTGM1-Flag", "sequence-type": "addgene-full", "addgene_id": "180406", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180406.addgene-full.gb" }, @@ -322521,7 +342124,6 @@ "plasmid_name": "R777-E143 Hs.NFKB1", "sequence-type": "depositor-full", "addgene_id": "70427", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -322549,7 +342151,10 @@ "plasmid_name": "pAG425GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14394", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -322611,7 +342216,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp14", "sequence-type": "depositor-full", "addgene_id": "168960", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -322640,7 +342248,10 @@ "plasmid_name": "pHAGE-GNAS", "sequence-type": "addgene-full", "addgene_id": "116748", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -322694,7 +342305,10 @@ "plasmid_name": "pCK052 p5E exorh:mCherry", "sequence-type": "addgene-full", "addgene_id": "195953", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195953.addgene-full.gb" }, @@ -322748,7 +342362,10 @@ "plasmid_name": "pDEST-APIC-LexAGAD", "sequence-type": "addgene-full", "addgene_id": "112807", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1707467114", + "https://www.ncbi.nlm.nih.gov/pubmed/28874572" + ], "kit": null, "att_sites": [ "attR1", @@ -322784,7 +342401,10 @@ "plasmid_name": "pDONR223_WIPI1_WT", "sequence-type": "addgene-full", "addgene_id": "82055", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -322816,7 +342436,10 @@ "plasmid_name": "pHPyV7-713a", "sequence-type": "depositor-full", "addgene_id": "24728", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2010.05.006", + "https://www.ncbi.nlm.nih.gov/pubmed/20542254" + ], "kit": null, "att_sites": [ "attL1", @@ -322841,7 +342464,10 @@ "plasmid_name": "pYPQ256-x3.7", "sequence-type": "addgene-full", "addgene_id": "124313", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "att_sites": [ "attL1", @@ -322878,7 +342504,10 @@ "plasmid_name": "HJP-176-IVS-Syn21-CreA-gp41-1N-WPREw", "sequence-type": "addgene-full", "addgene_id": "162470", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "att_sites": [ "attR1", @@ -322914,7 +342543,6 @@ "plasmid_name": "p663-UBC-TurboID-V5-BRSK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135272", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -322980,7 +342608,10 @@ "plasmid_name": "pSC6", "sequence-type": "addgene-full", "addgene_id": "104780", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "att_sites": [ "attR1", @@ -323020,7 +342651,6 @@ "plasmid_name": "Hs.KRAS4b Q61H", "sequence-type": "depositor-full", "addgene_id": "83140", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -323046,7 +342676,10 @@ "plasmid_name": "MSCV-LMP2A-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "220352", - "references": [], + "references": [ + "https://doi.org/10.3389/fimmu.2023.1331730", + "https://www.ncbi.nlm.nih.gov/pubmed/38169736" + ], "kit": null, "att_sites": [ "attB1", @@ -323089,7 +342722,6 @@ "plasmid_name": "pMx/ATP9A(E195Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209256", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -323124,7 +342756,10 @@ "plasmid_name": "pTW324", "sequence-type": "addgene-full", "addgene_id": "115955", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "att_sites": [ "attP1", @@ -323160,7 +342795,10 @@ "plasmid_name": "pAG415GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14169", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -323222,7 +342860,10 @@ "plasmid_name": "pLX307 ARHGAP30", "sequence-type": "addgene-full", "addgene_id": "117738", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117738.addgene-full.gb" }, @@ -323231,7 +342872,10 @@ "plasmid_name": "pENTR D-TOPO-C2_14", "sequence-type": "depositor-full", "addgene_id": "60253", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -323262,7 +342906,10 @@ "plasmid_name": "pDONR221-SLC33A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161430", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -323293,7 +342940,10 @@ "plasmid_name": "pDONR_P2R-P3_R2-Turbo-NES-mVenus-STOP-L3", "sequence-type": "addgene-full", "addgene_id": "127353", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL3", @@ -323330,7 +342980,10 @@ "plasmid_name": "pDONR221_SLC39A12", "sequence-type": "addgene-full", "addgene_id": "132129", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -323361,7 +343014,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NN_G1333-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171728", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171728.addgene-full.gb" }, @@ -323370,7 +343026,10 @@ "plasmid_name": "Tol2-LyzC-RacFRET-U6ac-ctrl guides", "sequence-type": "addgene-full", "addgene_id": "168247", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "att_sites": [ "attB1", @@ -323410,7 +343069,10 @@ "plasmid_name": "pDONR223-GCK", "sequence-type": "addgene-full", "addgene_id": "23750", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -323442,7 +343104,10 @@ "plasmid_name": "pHAGE-PIK3CA-S332_L334delSAL", "sequence-type": "addgene-full", "addgene_id": "116541", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -323492,7 +343157,9 @@ "plasmid_name": "pMpGWB331", "sequence-type": "depositor-full", "addgene_id": "68659", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -323540,7 +343207,10 @@ "plasmid_name": "pMDJ15 - pEXP[Peft-3 | mCardinal (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159801", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -323577,7 +343247,10 @@ "plasmid_name": "pENTR1a-MTS-jAspSnFR3", "sequence-type": "addgene-full", "addgene_id": "203461", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "att_sites": [ "attL1", @@ -323604,7 +343277,10 @@ "plasmid_name": "pInducer21-3xFlag-hMEFV-Q426R", "sequence-type": "addgene-full", "addgene_id": "195475", - "references": [], + "references": [ + "https://doi.org/10.1038/s41419-023-05745-9", + "https://www.ncbi.nlm.nih.gov/pubmed/36966139" + ], "kit": null, "att_sites": [ "attB1", @@ -323661,7 +343337,10 @@ "plasmid_name": "TFORF3513", "sequence-type": "depositor-full", "addgene_id": "144989", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -323721,7 +343400,10 @@ "plasmid_name": "pDONR221-ZNF808", "sequence-type": "addgene-full", "addgene_id": "101470", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -323750,7 +343432,10 @@ "plasmid_name": "pGEM-gate", "sequence-type": "addgene-full", "addgene_id": "113758", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -323797,7 +343482,10 @@ "plasmid_name": "pDONR221_SLC31A1", "sequence-type": "addgene-full", "addgene_id": "132252", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -323828,7 +343516,10 @@ "plasmid_name": "pDONR221-SLC16A8_STOP", "sequence-type": "depositor-full", "addgene_id": "161125", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -323859,7 +343550,10 @@ "plasmid_name": "pENTR-L3-Cas9-L2", "sequence-type": "addgene-full", "addgene_id": "141038", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -323886,7 +343580,6 @@ "plasmid_name": "pLIX403-EBFP2-ccdB-Blast", "sequence-type": "addgene-full", "addgene_id": "158557", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -323946,7 +343639,10 @@ "plasmid_name": "pENTR223-BaRF1(RNR-s)", "sequence-type": "addgene-full", "addgene_id": "195795", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -323975,7 +343671,10 @@ "plasmid_name": "C514-E14: attB5r-RU5u-His6-Halotag-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162956", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -324007,7 +343706,10 @@ "plasmid_name": "GFP-MUTED", "sequence-type": "addgene-full", "addgene_id": "164629", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "att_sites": [ "attB1", @@ -324059,7 +343761,10 @@ "plasmid_name": "pCellFree_G03 WAVE 2", "sequence-type": "addgene-full", "addgene_id": "67098", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "att_sites": [ "attB1", @@ -324096,7 +343801,10 @@ "plasmid_name": "pENTR223-BVRF1", "sequence-type": "addgene-full", "addgene_id": "195821", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -324125,7 +343833,10 @@ "plasmid_name": "pDONR221-SLC5A9_STOP", "sequence-type": "depositor-full", "addgene_id": "161396", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -324157,7 +343868,10 @@ "plasmid_name": "pDONR223_MAPK3_WT", "sequence-type": "addgene-full", "addgene_id": "82313", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -324187,7 +343901,10 @@ "plasmid_name": "pMuLE ENTR CMV loxP L5-L2", "sequence-type": "depositor-full", "addgene_id": "62094", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -324221,7 +343938,10 @@ "plasmid_name": "pAG423GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14270", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -324281,7 +344001,10 @@ "plasmid_name": "pDL189", "sequence-type": "addgene-full", "addgene_id": "175928", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -324305,7 +344028,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-LC3B-GFP", "sequence-type": "addgene-full", "addgene_id": "123107", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -324358,7 +344084,10 @@ "plasmid_name": "RET_Y981F-SHC", "sequence-type": "addgene-full", "addgene_id": "139621", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -324402,7 +344131,10 @@ "plasmid_name": "pZA5", "sequence-type": "addgene-full", "addgene_id": "158483", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -324432,7 +344164,10 @@ "plasmid_name": "pDONR221_SLC2A7", "sequence-type": "addgene-full", "addgene_id": "132066", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -324463,7 +344198,6 @@ "plasmid_name": "pTwist-ENTR-MCP-ADAR2-DD(E488Q/T490A)-V5", "sequence-type": "addgene-full", "addgene_id": "192713", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -324496,7 +344230,9 @@ "plasmid_name": "pMpGWB226", "sequence-type": "depositor-full", "addgene_id": "68617", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -324544,7 +344280,10 @@ "plasmid_name": "pMpGWB102-Citrine-NLS", "sequence-type": "depositor-full", "addgene_id": "79136", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "att_sites": [ "attB1", @@ -324590,7 +344329,10 @@ "plasmid_name": "R725-X09-635: His6-tev-Hs.SPRED1(13-125)", "sequence-type": "addgene-full", "addgene_id": "159581", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.107909", + "https://www.ncbi.nlm.nih.gov/pubmed/32697994" + ], "kit": null, "att_sites": [ "attB1", @@ -324627,7 +344369,10 @@ "plasmid_name": "pDONR223_NBPF15_WT", "sequence-type": "addgene-full", "addgene_id": "82068", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -324639,7 +344384,10 @@ "plasmid_name": "pCx55.5-TrpR", "sequence-type": "addgene-full", "addgene_id": "86373", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms10590", + "https://www.ncbi.nlm.nih.gov/pubmed/26838932" + ], "kit": null, "att_sites": [ "attB1", @@ -324683,7 +344431,10 @@ "plasmid_name": "pDONR223-EPHB1", "sequence-type": "addgene-full", "addgene_id": "23930", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -324715,7 +344466,10 @@ "plasmid_name": "pHAGE-PIK3CA-G118D", "sequence-type": "addgene-full", "addgene_id": "116495", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -324765,7 +344519,10 @@ "plasmid_name": "pZHY051", "sequence-type": "depositor-full", "addgene_id": "44987", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.205179", + "https://www.ncbi.nlm.nih.gov/pubmed/23124327" + ], "kit": null, "att_sites": [ "attR1", @@ -324807,7 +344564,10 @@ "plasmid_name": "pME-p3E-HyPer7", "sequence-type": "addgene-full", "addgene_id": "194289", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "att_sites": [ "attL1", @@ -324838,7 +344598,10 @@ "plasmid_name": "LA501: pMVP (L3-L2) P2A-Neo + WPRE", "sequence-type": "addgene-full", "addgene_id": "121786", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -324876,7 +344639,10 @@ "plasmid_name": "KO001: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS-p300core", "sequence-type": "addgene-full", "addgene_id": "121832", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -324912,7 +344678,10 @@ "plasmid_name": "pL106P-LUC-ENTR1A(w451-1)", "sequence-type": "depositor-full", "addgene_id": "17455", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -324940,7 +344709,10 @@ "plasmid_name": "pYPQ223-STU", "sequence-type": "addgene-full", "addgene_id": "138109", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -324971,7 +344743,9 @@ "plasmid_name": "pPB-cT3G-cERP2-PAX5", "sequence-type": "addgene-full", "addgene_id": "222575", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -325017,7 +344791,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP12_nostop", "sequence-type": "addgene-full", "addgene_id": "168659", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -325046,7 +344823,10 @@ "plasmid_name": "gp64-mVEGF-C-HisTag-pENTR", "sequence-type": "depositor-full", "addgene_id": "64065", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2015.03.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25758709" + ], "kit": null, "att_sites": [ "attL1", @@ -325079,7 +344859,10 @@ "plasmid_name": "pAG424GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14344", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -325141,7 +344924,6 @@ "plasmid_name": "pCM1.120", "sequence-type": "depositor-full", "addgene_id": "19600", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -325172,7 +344954,10 @@ "plasmid_name": "BTG1", "sequence-type": "addgene-full", "addgene_id": "155425", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -325215,7 +345000,10 @@ "plasmid_name": "TFORF3068", "sequence-type": "addgene-full", "addgene_id": "144544", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144544.addgene-full.gb" }, @@ -325224,7 +345012,9 @@ "plasmid_name": "pDONR221-SCARB2(v2)", "sequence-type": "addgene-full", "addgene_id": "166207", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -325255,7 +345045,10 @@ "plasmid_name": "pDONR221-SLC39A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161355", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -325286,7 +345079,9 @@ "plasmid_name": "pME EFS-rtTA/rtTA3 (JDW 1230)", "sequence-type": "addgene-full", "addgene_id": "224525", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -325318,7 +345113,10 @@ "plasmid_name": "MultiMate 5 colors", "sequence-type": "addgene-full", "addgene_id": "206266", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attB1", @@ -325368,7 +345166,10 @@ "plasmid_name": "pDONR223_NFE2L2_WT", "sequence-type": "addgene-full", "addgene_id": "81770", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -325400,7 +345201,10 @@ "plasmid_name": "pDR3.10", "sequence-type": "depositor-full", "addgene_id": "19367", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19367.depositor-full.gb" }, @@ -325409,7 +345213,10 @@ "plasmid_name": "pDONR223_GALNT14_p.P484S", "sequence-type": "addgene-full", "addgene_id": "81490", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -325441,7 +345248,6 @@ "plasmid_name": "pAM-PAT-ProATE1 GW", "sequence-type": "depositor-full", "addgene_id": "80681", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -325473,7 +345279,10 @@ "plasmid_name": "pLVX-HA-UBE3B-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107345", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "att_sites": [ "attB1", @@ -325523,7 +345332,10 @@ "plasmid_name": "TFORF3434", "sequence-type": "addgene-full", "addgene_id": "144910", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -325583,7 +345395,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP6_nostop", "sequence-type": "addgene-full", "addgene_id": "168522", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -325612,7 +345427,10 @@ "plasmid_name": "pDONR221-SLC29A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161281", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -325643,7 +345461,10 @@ "plasmid_name": "5'-3xFLAG Gatad2a-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212051", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -325683,7 +345504,6 @@ "plasmid_name": "mOrange in pBSDONR P4r-P2", "sequence-type": "addgene-full", "addgene_id": "121529", - "references": [], "kit": null, "att_sites": [ "attL2", @@ -325725,7 +345545,10 @@ "plasmid_name": "TFORF3014", "sequence-type": "addgene-full", "addgene_id": "144490", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -325785,7 +345608,6 @@ "plasmid_name": "R777-E039 Hs.DUSP4", "sequence-type": "depositor-full", "addgene_id": "70323", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -325797,7 +345619,10 @@ "plasmid_name": "TFORF3294", "sequence-type": "addgene-full", "addgene_id": "144770", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -325857,7 +345682,10 @@ "plasmid_name": "actc1b-mKate2-rab6bb", "sequence-type": "addgene-full", "addgene_id": "109654", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -325899,7 +345727,10 @@ "plasmid_name": "pDONR221_SLC18A1", "sequence-type": "addgene-full", "addgene_id": "131985", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -325931,7 +345762,10 @@ "plasmid_name": "pDONR221-SLC25A48_STOP", "sequence-type": "addgene-full", "addgene_id": "161161", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161161.addgene-full.gb" }, @@ -325940,7 +345774,10 @@ "plasmid_name": "pGWB418", "sequence-type": "depositor-full", "addgene_id": "74812", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -325990,7 +345827,10 @@ "plasmid_name": "pDONR223_ZBTB24_p.K123M", "sequence-type": "addgene-full", "addgene_id": "82796", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -326019,7 +345859,10 @@ "plasmid_name": "pDONR223_BRAF_p.L613F", "sequence-type": "addgene-full", "addgene_id": "82822", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -326049,7 +345892,10 @@ "plasmid_name": "pLenti-CMV-Blast-DNFGFR1-HA", "sequence-type": "addgene-full", "addgene_id": "130887", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.07.092", + "https://www.ncbi.nlm.nih.gov/pubmed/31461652" + ], "kit": null, "att_sites": [ "attB1", @@ -326110,7 +345956,10 @@ "plasmid_name": "pDEST-N2H-C1", "sequence-type": "addgene-full", "addgene_id": "125549", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11809-2", + "https://www.ncbi.nlm.nih.gov/pubmed/31467278" + ], "kit": null, "file": "data/addgene_plasmids/125549.addgene-full.gb" }, @@ -326119,7 +345968,10 @@ "plasmid_name": "pLenti_EF1a_Flag_EGFP", "sequence-type": "addgene-full", "addgene_id": "183117", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "att_sites": [ "attB1", @@ -326181,7 +346033,9 @@ "plasmid_name": "pMpGWB136", "sequence-type": "depositor-full", "addgene_id": "68590", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -326228,7 +346082,6 @@ "plasmid_name": "pDEST-Spe4-RfA-Snaptag-stop", "sequence-type": "addgene-full", "addgene_id": "186395", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -326272,7 +346125,10 @@ "plasmid_name": "pBS L30 Ruby3-Rab7A", "sequence-type": "addgene-full", "addgene_id": "135651", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.aba7803", + "https://www.ncbi.nlm.nih.gov/pubmed/33523982" + ], "kit": null, "att_sites": [ "attB1", @@ -326316,7 +346172,10 @@ "plasmid_name": "pDONR221-kcnj5", "sequence-type": "addgene-full", "addgene_id": "173132", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -326347,7 +346206,6 @@ "plasmid_name": "R777-E360 Hs.YAP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70644", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -326375,7 +346233,10 @@ "plasmid_name": "pHL-EF1a-SphcCas9(D10A)-iP-A", "sequence-type": "depositor-full", "addgene_id": "60600", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.013", + "https://www.ncbi.nlm.nih.gov/pubmed/25434822" + ], "kit": null, "att_sites": [ "attB1", @@ -326412,7 +346273,10 @@ "plasmid_name": "MED12_pLX307", "sequence-type": "addgene-full", "addgene_id": "98350", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -326472,7 +346336,10 @@ "plasmid_name": "NAP1L3", "sequence-type": "addgene-full", "addgene_id": "155763", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -326515,7 +346382,10 @@ "plasmid_name": "pAC1814_pCR8-gSMN2-DN2", "sequence-type": "addgene-full", "addgene_id": "118647", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -326548,7 +346418,10 @@ "plasmid_name": "p3E-rab8b", "sequence-type": "addgene-full", "addgene_id": "109726", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -326579,7 +346452,6 @@ "plasmid_name": "R777-E005 Hs.AKT3", "sequence-type": "depositor-full", "addgene_id": "70289", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -326607,7 +346479,10 @@ "plasmid_name": "TFORF3126", "sequence-type": "addgene-full", "addgene_id": "144602", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -326667,7 +346542,9 @@ "plasmid_name": "pAG416GAL-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166141", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attB1", @@ -326721,7 +346598,10 @@ "plasmid_name": "pHAGE-EGFR-P546S", "sequence-type": "addgene-full", "addgene_id": "116282", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -326775,7 +346655,10 @@ "plasmid_name": "pDONR223_CYP3A5_p.G177R", "sequence-type": "addgene-full", "addgene_id": "81436", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -326807,7 +346690,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TSSK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189894", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -326873,7 +346755,9 @@ "plasmid_name": "pPB-cT3G-cERP2-DMRTC2", "sequence-type": "addgene-full", "addgene_id": "222548", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -326919,7 +346803,10 @@ "plasmid_name": "p{3P3-eGFP::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182167", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attR1", @@ -326968,7 +346855,10 @@ "plasmid_name": "pDONR223_MAGEC2_WT", "sequence-type": "addgene-full", "addgene_id": "81862", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -327000,7 +346890,10 @@ "plasmid_name": "p7058 pHAGE-P-CMVt-N-HA-GAW-FDFT1", "sequence-type": "addgene-full", "addgene_id": "100151", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -327052,7 +346945,10 @@ "plasmid_name": "pHAGE-BRAF-G69S", "sequence-type": "addgene-full", "addgene_id": "116162", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -327107,7 +347003,6 @@ "plasmid_name": "pVP16-tev-PRT1-V28A", "sequence-type": "addgene-full", "addgene_id": "83406", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -327146,7 +347041,10 @@ "plasmid_name": "CRABP2", "sequence-type": "addgene-full", "addgene_id": "155483", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -327189,7 +347087,10 @@ "plasmid_name": "pLenti-CMV-PM", "sequence-type": "addgene-full", "addgene_id": "197386", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-023-01130-y", + "https://www.ncbi.nlm.nih.gov/pubmed/37106062" + ], "kit": null, "att_sites": [ "attB1", @@ -327250,7 +347151,10 @@ "plasmid_name": "pMULTIrec", "sequence-type": "depositor-full", "addgene_id": "43959", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "att_sites": [ "attB1", @@ -327315,7 +347219,6 @@ "plasmid_name": "L5-LexAp65-L2", "sequence-type": "depositor-full", "addgene_id": "41437", - "references": [], "kit": null, "att_sites": [ "attL2", @@ -327347,7 +347250,10 @@ "plasmid_name": "pFRT-TODestFLAGHAhFXR1", "sequence-type": "addgene-full", "addgene_id": "48694", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11737", + "https://www.ncbi.nlm.nih.gov/pubmed/23235829" + ], "kit": null, "file": "data/addgene_plasmids/48694.addgene-full.gb" }, @@ -327356,7 +347262,10 @@ "plasmid_name": "pDONR221-SLC43A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161368", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -327388,7 +347297,9 @@ "plasmid_name": "pME-mTurquoise-P2A-iCre (JDW 920)", "sequence-type": "addgene-full", "addgene_id": "224518", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224518.addgene-full.gb" }, @@ -327397,7 +347308,10 @@ "plasmid_name": "pMSCVpuro-DEST", "sequence-type": "addgene-full", "addgene_id": "119745", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.201798506", + "https://www.ncbi.nlm.nih.gov/pubmed/29959219" + ], "kit": null, "att_sites": [ "attR1", @@ -327444,7 +347358,10 @@ "plasmid_name": "pDONR221-SLC15A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161088", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -327475,7 +347392,10 @@ "plasmid_name": "pDONR223_PSMD9_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82950", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -327504,7 +347424,10 @@ "plasmid_name": "II901: pMVP (L5-L4) FKBP DD", "sequence-type": "addgene-full", "addgene_id": "121720", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -327537,7 +347460,10 @@ "plasmid_name": "pLenti6.2_3xFLAG_V5_ eGFP_V5", "sequence-type": "addgene-full", "addgene_id": "160111", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -327600,7 +347526,10 @@ "plasmid_name": "TFORF3223", "sequence-type": "addgene-full", "addgene_id": "144699", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -327660,7 +347589,10 @@ "plasmid_name": "pHAGE-CDKN2A-A100S", "sequence-type": "addgene-full", "addgene_id": "116219", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -327714,7 +347646,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK17_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158174", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -327780,7 +347711,10 @@ "plasmid_name": "plenti-UbcP-HA-CRBN-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107378", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -327838,7 +347772,10 @@ "plasmid_name": "pBi2FC-C-GW-P2A:mTagBFP2", "sequence-type": "addgene-full", "addgene_id": "216143", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attR1", @@ -327890,7 +347827,6 @@ "plasmid_name": "pTRIPZ-NUDT17-C-HA-Puro", "sequence-type": "addgene-full", "addgene_id": "195182", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -327955,7 +347891,10 @@ "plasmid_name": "pDONR223_MEF2C_p.T9M", "sequence-type": "addgene-full", "addgene_id": "81699", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -327987,7 +347926,10 @@ "plasmid_name": "pLentiCMVNeoDEST(705-1)-hAXL", "sequence-type": "addgene-full", "addgene_id": "124796", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0718", + "https://www.ncbi.nlm.nih.gov/pubmed/30291220" + ], "kit": null, "att_sites": [ "attB1", @@ -328049,7 +347991,10 @@ "plasmid_name": "pCellFree_G10", "sequence-type": "depositor-full", "addgene_id": "67144", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "att_sites": [ "attR1", @@ -328090,7 +348035,10 @@ "plasmid_name": "p3E-ARF1", "sequence-type": "addgene-full", "addgene_id": "109589", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -328121,7 +348069,10 @@ "plasmid_name": "p3E-rab14l", "sequence-type": "addgene-full", "addgene_id": "109669", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -328152,7 +348103,10 @@ "plasmid_name": "pJW4.27", "sequence-type": "depositor-full", "addgene_id": "62877", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -328196,7 +348150,10 @@ "plasmid_name": "pSLIK 3xFLAG-KPNA2 zeo", "sequence-type": "addgene-full", "addgene_id": "192330", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -328261,7 +348218,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 S 24nt-del_nostop", "sequence-type": "addgene-full", "addgene_id": "153953", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -328290,7 +348250,10 @@ "plasmid_name": "pDONR223 NRF2", "sequence-type": "addgene-full", "addgene_id": "118708", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.042", + "https://www.ncbi.nlm.nih.gov/pubmed/27368101" + ], "kit": null, "att_sites": [ "attL1", @@ -328319,7 +348282,6 @@ "plasmid_name": "pHAGE mCherry-Rab25", "sequence-type": "addgene-full", "addgene_id": "228039", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -328371,7 +348333,10 @@ "plasmid_name": "pLD-puro-Cc-PARK7C53A-VA", "sequence-type": "addgene-full", "addgene_id": "115184", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attB1", @@ -328433,7 +348398,10 @@ "plasmid_name": "pDONR223_DOK1_WT", "sequence-type": "addgene-full", "addgene_id": "82884", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -328462,7 +348430,10 @@ "plasmid_name": "pDONR223_WBSCR17_p.D348N", "sequence-type": "addgene-full", "addgene_id": "81579", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -328494,7 +348465,9 @@ "plasmid_name": "pMpGWB424", "sequence-type": "depositor-full", "addgene_id": "68689", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -328545,7 +348518,10 @@ "plasmid_name": "pEXPqcxip-hSURF4-FLAG", "sequence-type": "addgene-full", "addgene_id": "159139", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2011.06.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21903422" + ], "kit": null, "att_sites": [ "attB1", @@ -328589,7 +348565,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep70", "sequence-type": "addgene-full", "addgene_id": "136871", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -328632,7 +348611,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-C-mEYFP", "sequence-type": "addgene-full", "addgene_id": "223951", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -328683,7 +348661,10 @@ "plasmid_name": "pDONR221_SLC16A5", "sequence-type": "addgene-full", "addgene_id": "131923", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -328714,7 +348695,6 @@ "plasmid_name": "pLenti6.3/NS1", "sequence-type": "addgene-full", "addgene_id": "120842", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -328773,7 +348753,10 @@ "plasmid_name": "TFORF3386", "sequence-type": "addgene-full", "addgene_id": "144862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -328833,7 +348816,10 @@ "plasmid_name": "pcDNA3_DRD1-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194360", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -328890,7 +348876,6 @@ "plasmid_name": "Ad-EEF1D-S133E", "sequence-type": "addgene-full", "addgene_id": "131577", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -328927,7 +348912,10 @@ "plasmid_name": "pDONR-IAA1_no stop", "sequence-type": "depositor-full", "addgene_id": "83847", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -328958,7 +348946,10 @@ "plasmid_name": "p1177-X1-8", "sequence-type": "depositor-full", "addgene_id": "38150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2010.11.005", + "https://www.ncbi.nlm.nih.gov/pubmed/21073956" + ], "kit": null, "att_sites": [ "attB1", @@ -328993,7 +348984,10 @@ "plasmid_name": "actc1b-mKate2-EHD1a", "sequence-type": "addgene-full", "addgene_id": "109512", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -329035,7 +349029,10 @@ "plasmid_name": "TFORF2960", "sequence-type": "addgene-full", "addgene_id": "144436", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -329095,7 +349092,10 @@ "plasmid_name": "pDONR223_PIK3CB_p.A593V", "sequence-type": "addgene-full", "addgene_id": "81602", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -329107,7 +349107,10 @@ "plasmid_name": "p3E-MCS", "sequence-type": "depositor-full", "addgene_id": "75174", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -329143,7 +349146,10 @@ "plasmid_name": "pDONR221-SLC35G1_STOP", "sequence-type": "addgene-full", "addgene_id": "161227", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -329174,7 +349180,6 @@ "plasmid_name": "pLEX307-FURIN-G418", "sequence-type": "addgene-full", "addgene_id": "158462", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -329235,7 +349240,10 @@ "plasmid_name": "pDONR221_SLC35B3", "sequence-type": "addgene-full", "addgene_id": "132087", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132087.addgene-full.gb" }, @@ -329244,7 +349252,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::HA-RfA", "sequence-type": "addgene-full", "addgene_id": "186411", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -329282,7 +349293,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-92a-1", "sequence-type": "depositor-full", "addgene_id": "46672", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -329332,7 +349346,10 @@ "plasmid_name": "pJH161_pE12_HyPep_mRuby", "sequence-type": "addgene-full", "addgene_id": "160407", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -329364,7 +349381,10 @@ "plasmid_name": "pEF.DEST51-mScarlet", "sequence-type": "addgene-full", "addgene_id": "207960", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2304288120", + "https://www.ncbi.nlm.nih.gov/pubmed/37844244" + ], "kit": null, "att_sites": [ "attB1", @@ -329417,7 +349437,10 @@ "plasmid_name": "pCAG/ATP8B3-HA", "sequence-type": "addgene-full", "addgene_id": "209211", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -329461,7 +349484,10 @@ "plasmid_name": "pDONR223 LC3B G120A no-stop", "sequence-type": "addgene-full", "addgene_id": "123206", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -329491,7 +349517,10 @@ "plasmid_name": "pDestTol2CG2-U6:gRNA", "sequence-type": "addgene-full", "addgene_id": "63156", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.01.032", + "https://www.ncbi.nlm.nih.gov/pubmed/25752963" + ], "kit": null, "att_sites": [ "attR3", @@ -329535,7 +349564,6 @@ "plasmid_name": "pSMPUW_6.5_M2_Ef1a-V5-gateway", "sequence-type": "addgene-full", "addgene_id": "128441", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -329581,7 +349609,6 @@ "plasmid_name": "pDEST-EB-Hyg-R4R3", "sequence-type": "addgene-full", "addgene_id": "139520", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -329616,7 +349643,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK19_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214465", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -329682,7 +349708,10 @@ "plasmid_name": "pME mKate2-dynactin1-811", "sequence-type": "addgene-full", "addgene_id": "105971", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21206", + "https://www.ncbi.nlm.nih.gov/pubmed/26879757" + ], "kit": null, "att_sites": [ "attL1", @@ -329714,7 +349743,10 @@ "plasmid_name": "pDONR223_AKT1_p.E17K", "sequence-type": "addgene-full", "addgene_id": "82089", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -329747,7 +349779,10 @@ "plasmid_name": "TFORF3541", "sequence-type": "depositor-full", "addgene_id": "145017", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -329807,7 +349842,10 @@ "plasmid_name": "PB-CT3G-ERP2-MG-IRES2-mNeonGreen", "sequence-type": "addgene-full", "addgene_id": "175506", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -329855,7 +349893,10 @@ "plasmid_name": "R713-M85-303: CMV51p> Halotag-Hs.KRAS4a", "sequence-type": "addgene-full", "addgene_id": "159680", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "att_sites": [ "attB1", @@ -329912,7 +349953,10 @@ "plasmid_name": "pDONR223-LATS1", "sequence-type": "addgene-full", "addgene_id": "23665", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -329944,7 +349988,10 @@ "plasmid_name": "pLEX307-EF1a-ChR2[H134R]-mCherry-Puro-WPRE", "sequence-type": "addgene-full", "addgene_id": "125256", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.aat5847", + "https://www.ncbi.nlm.nih.gov/pubmed/30324134" + ], "kit": null, "att_sites": [ "attB1", @@ -330008,7 +350055,10 @@ "plasmid_name": "pDONR221-Ckb2", "sequence-type": "addgene-full", "addgene_id": "99982", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attL1", @@ -330039,7 +350089,10 @@ "plasmid_name": "pAC150-TEX264\u0394LIR-GFP", "sequence-type": "addgene-full", "addgene_id": "201930", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "att_sites": [ "attB1", @@ -330097,7 +350150,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 ORF7A", "sequence-type": "addgene-full", "addgene_id": "141276", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -330121,7 +350177,6 @@ "plasmid_name": "R777-E207 Hs.RAC1", "sequence-type": "depositor-full", "addgene_id": "70491", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -330150,7 +350205,10 @@ "plasmid_name": "pHAGE-STK11", "sequence-type": "addgene-full", "addgene_id": "116794", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -330204,7 +350262,10 @@ "plasmid_name": "pAG425GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14322", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -330266,7 +350327,10 @@ "plasmid_name": "pHAGE-GSK3A__ZNF564", "sequence-type": "addgene-full", "addgene_id": "116820", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -330317,7 +350381,10 @@ "plasmid_name": "pLENTI EF1alpha FLAG/HA-LCOR", "sequence-type": "addgene-full", "addgene_id": "114444", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "att_sites": [ "attB1", @@ -330384,7 +350451,10 @@ "plasmid_name": "pYPQ265O1", "sequence-type": "addgene-full", "addgene_id": "173999", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "att_sites": [ "attL1", @@ -330420,7 +350490,10 @@ "plasmid_name": "R701-X52-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169)", "sequence-type": "addgene-full", "addgene_id": "159560", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -330467,7 +350540,10 @@ "plasmid_name": "pcDNA5/FRT/TO/TARG1", "sequence-type": "addgene-full", "addgene_id": "172580", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attB1", @@ -330509,7 +350585,10 @@ "plasmid_name": "pDONR221_SLC50A1", "sequence-type": "addgene-full", "addgene_id": "132228", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -330540,7 +350619,10 @@ "plasmid_name": "pDest-665 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161885", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -330604,7 +350686,10 @@ "plasmid_name": "pDONR223_CD3E_p.E189Q", "sequence-type": "addgene-full", "addgene_id": "81314", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -330636,7 +350721,6 @@ "plasmid_name": "R777-E338 Hs.STK3-nostop", "sequence-type": "depositor-full", "addgene_id": "70622", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -330665,7 +350749,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV C", "sequence-type": "addgene-full", "addgene_id": "145359", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -330708,7 +350795,10 @@ "plasmid_name": "pDESTN-MTp-p53-Venus", "sequence-type": "depositor-full", "addgene_id": "53736", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2008.03.016", + "https://www.ncbi.nlm.nih.gov/pubmed/18471974" + ], "kit": null, "att_sites": [ "attB1", @@ -330758,7 +350848,10 @@ "plasmid_name": "pJEP227-Lenti-CMV-GFP-GluN2A-WPRE-pA", "sequence-type": "addgene-full", "addgene_id": "84276", - "references": [], + "references": [ + "https://doi.org/10.1186/s13041-015-0100-7", + "https://www.ncbi.nlm.nih.gov/pubmed/25887710" + ], "kit": null, "att_sites": [ "attB1", @@ -330820,7 +350913,10 @@ "plasmid_name": "PB-Lmo2", "sequence-type": "depositor-full", "addgene_id": "60666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "att_sites": [ "attB1", @@ -330860,7 +350956,10 @@ "plasmid_name": "pDL64", "sequence-type": "addgene-full", "addgene_id": "175886", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -330884,7 +350983,10 @@ "plasmid_name": "pAG414GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14191", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -330946,7 +351048,10 @@ "plasmid_name": "pDONR223-ZNF132", "sequence-type": "addgene-full", "addgene_id": "88563", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -330975,7 +351080,10 @@ "plasmid_name": "pENTR-L3-Csy4-FokI-dCas9-L2", "sequence-type": "addgene-full", "addgene_id": "141042", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -331005,7 +351113,10 @@ "plasmid_name": "pHAGE-PTPN11-E139D", "sequence-type": "addgene-full", "addgene_id": "116640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -331059,7 +351170,10 @@ "plasmid_name": "pPB-cT3G-cERP2-KLF6", "sequence-type": "addgene-full", "addgene_id": "192909", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192909.addgene-full.gb" }, @@ -331068,7 +351182,10 @@ "plasmid_name": "pDONR221_SLC39A6", "sequence-type": "addgene-full", "addgene_id": "132153", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -331099,7 +351216,10 @@ "plasmid_name": "pYPQ141D", "sequence-type": "depositor-full", "addgene_id": "69293", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69293.depositor-full.gb" }, @@ -331108,7 +351228,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(TM-KTM)-IRES-neo", "sequence-type": "addgene-full", "addgene_id": "128675", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -331158,7 +351281,6 @@ "plasmid_name": "DDX3X - A393T in pENTR", "sequence-type": "addgene-full", "addgene_id": "216581", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -331187,7 +351309,10 @@ "plasmid_name": "pcDNA3.1 PA-mCit-BAD", "sequence-type": "addgene-full", "addgene_id": "113459", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "att_sites": [ "attB1", @@ -331238,7 +351363,6 @@ "plasmid_name": "R777-E061 Hs.ERBB2", "sequence-type": "depositor-full", "addgene_id": "70345", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -331266,7 +351390,10 @@ "plasmid_name": "pLenti-PGK-RAP1A-WT-neo", "sequence-type": "addgene-full", "addgene_id": "156173", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -331326,7 +351453,10 @@ "plasmid_name": "pDONR223_PRKCB_WT", "sequence-type": "addgene-full", "addgene_id": "82226", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL2" @@ -331353,7 +351483,10 @@ "plasmid_name": "pGL4_EGR1p-BC1487-luc2", "sequence-type": "addgene-full", "addgene_id": "214651", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -331396,7 +351529,10 @@ "plasmid_name": "pENTR223-BLLF2", "sequence-type": "addgene-full", "addgene_id": "195774", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -331425,7 +351561,10 @@ "plasmid_name": "Flag-HA-OTUD1", "sequence-type": "addgene-full", "addgene_id": "22553", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -331470,7 +351609,10 @@ "plasmid_name": "pDestTol2CG2-mnx1:mCherry-PA-Rac1", "sequence-type": "addgene-full", "addgene_id": "169044", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2020.05.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32516597" + ], "kit": null, "att_sites": [ "attB1", @@ -331516,7 +351658,10 @@ "plasmid_name": "pGC93", "sequence-type": "depositor-full", "addgene_id": "19628", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -331560,7 +351705,10 @@ "plasmid_name": "pGWB540", "sequence-type": "depositor-full", "addgene_id": "74874", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -331609,7 +351757,10 @@ "plasmid_name": "pWZL Neo Myr Flag STK4", "sequence-type": "addgene-full", "addgene_id": "20563", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -331650,7 +351801,10 @@ "plasmid_name": "MAC_C_AKIP", "sequence-type": "addgene-full", "addgene_id": "111660", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -331695,7 +351849,6 @@ "plasmid_name": "p667-UBC-ULK4-V5-miniTurbo-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198011", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -331761,7 +351914,10 @@ "plasmid_name": "pYPQ269E2", "sequence-type": "addgene-full", "addgene_id": "164721", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -331799,7 +351955,10 @@ "plasmid_name": "pHAGE-EPHA2", "sequence-type": "addgene-full", "addgene_id": "116732", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -331849,7 +352008,6 @@ "plasmid_name": "pEN_TT CVB3 A67G", "sequence-type": "addgene-full", "addgene_id": "216788", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -331877,7 +352035,10 @@ "plasmid_name": "pLX313-Firefly luciferase", "sequence-type": "addgene-full", "addgene_id": "118017", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-018-0204-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30224644" + ], "kit": null, "att_sites": [ "attB1", @@ -331937,7 +352098,10 @@ "plasmid_name": "pLX302 PCSK5 (T288P)-V5 puro", "sequence-type": "addgene-full", "addgene_id": "98709", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "att_sites": [ "attB1", @@ -331998,7 +352162,10 @@ "plasmid_name": "pDONR223_HRAS_p.G12C", "sequence-type": "addgene-full", "addgene_id": "81266", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -332030,7 +352197,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CSNK1G1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214458", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -332096,7 +352262,10 @@ "plasmid_name": "pRU293", "sequence-type": "addgene-full", "addgene_id": "167688", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -332144,7 +352313,6 @@ "plasmid_name": "IDG_KCNA6_OE_1", "sequence-type": "addgene-full", "addgene_id": "161643", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -332203,7 +352371,10 @@ "plasmid_name": "pDONR207-MUM2sp-PelA", "sequence-type": "addgene-full", "addgene_id": "170722", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcab077", + "https://www.ncbi.nlm.nih.gov/pubmed/34059917" + ], "kit": null, "file": "data/addgene_plasmids/170722.addgene-full.gb" }, @@ -332212,7 +352383,6 @@ "plasmid_name": "pPtPBR11_fcpShble_GWB", "sequence-type": "addgene-full", "addgene_id": "154031", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -332250,7 +352420,10 @@ "plasmid_name": "pEN_TmiRc3_shURB5", "sequence-type": "depositor-full", "addgene_id": "81066", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "att_sites": [ "attL1", @@ -332281,7 +352454,6 @@ "plasmid_name": "pCDNA3-hTLR3-VenusFlag", "sequence-type": "addgene-full", "addgene_id": "197636", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -332335,7 +352507,10 @@ "plasmid_name": "pHAGE-PDGFRA-P345S", "sequence-type": "addgene-full", "addgene_id": "116449", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -332385,7 +352560,10 @@ "plasmid_name": "SF3A2", "sequence-type": "addgene-full", "addgene_id": "156001", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -332428,7 +352606,10 @@ "plasmid_name": "pCPP5053", "sequence-type": "addgene-full", "addgene_id": "128707", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -332459,7 +352640,10 @@ "plasmid_name": "pDONR221_SLC18B1", "sequence-type": "addgene-full", "addgene_id": "132021", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -332490,7 +352674,6 @@ "plasmid_name": "R777-E291 Hs.RPS6KA2", "sequence-type": "depositor-full", "addgene_id": "70575", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -332518,7 +352701,10 @@ "plasmid_name": "pDONR221_SLC46A3", "sequence-type": "addgene-full", "addgene_id": "132215", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -332549,7 +352735,10 @@ "plasmid_name": "p667-UBC-NRF2-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207812", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -332614,7 +352803,10 @@ "plasmid_name": "pCAB1-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209363", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -332659,7 +352851,10 @@ "plasmid_name": "pDONR223_OR2T33_p.P285L", "sequence-type": "addgene-full", "addgene_id": "81329", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -332691,7 +352886,10 @@ "plasmid_name": "pDONR223_RELA_WT", "sequence-type": "addgene-full", "addgene_id": "82160", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -332720,7 +352918,10 @@ "plasmid_name": "pmCell-Free_KA2_ZIKV NS2B", "sequence-type": "addgene-full", "addgene_id": "145364", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -332763,7 +352964,10 @@ "plasmid_name": "pAG426GAL-ccdB", "sequence-type": "addgene-full", "addgene_id": "14155", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -332825,7 +353029,10 @@ "plasmid_name": "C234-E07: attB2r-HA-attB3", "sequence-type": "addgene-full", "addgene_id": "162911", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -332855,7 +353062,10 @@ "plasmid_name": "pDONR223_TGFB1_WT", "sequence-type": "addgene-full", "addgene_id": "82280", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -332884,7 +353094,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3B G120", "sequence-type": "addgene-full", "addgene_id": "123094", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -332928,7 +353141,10 @@ "plasmid_name": "pShuttle-PRL.Cre", "sequence-type": "addgene-full", "addgene_id": "192934", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "att_sites": [ "attL1", @@ -332967,7 +353183,10 @@ "plasmid_name": "pENTR4 CDS A. thaliana IMPORTIN ALPHA 3 / MOS6", "sequence-type": "addgene-full", "addgene_id": "175820", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.15082", + "https://www.ncbi.nlm.nih.gov/pubmed/33210758" + ], "kit": null, "att_sites": [ "attL1", @@ -332991,7 +353210,10 @@ "plasmid_name": "pDONR221-SFXN1_STOP", "sequence-type": "addgene-full", "addgene_id": "161477", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -333022,7 +353244,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj13-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164941", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB1", @@ -333070,7 +353295,10 @@ "plasmid_name": "pMEyrkP1gfp", "sequence-type": "addgene-full", "addgene_id": "90133", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL1", @@ -333107,7 +353335,10 @@ "plasmid_name": "MAC_C_MUSK", "sequence-type": "addgene-full", "addgene_id": "187781", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -333152,7 +353383,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_E", "sequence-type": "addgene-full", "addgene_id": "169399", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -333194,7 +353424,10 @@ "plasmid_name": "TRAPPC10_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176989", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -333246,7 +353479,10 @@ "plasmid_name": "pCFJ1985 - [1-2] ENTR - Fluor - TagBFP2(PATC, NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159846", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -333278,7 +353514,10 @@ "plasmid_name": "pHAGE-PIK3CA-K111E", "sequence-type": "addgene-full", "addgene_id": "116506", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -333328,7 +353567,10 @@ "plasmid_name": "pAG414GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14288", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -333389,7 +353631,10 @@ "plasmid_name": "pDONR221_SLC16A8", "sequence-type": "addgene-full", "addgene_id": "131959", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -333420,7 +353665,10 @@ "plasmid_name": "p3E-rab30", "sequence-type": "addgene-full", "addgene_id": "109688", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -333451,7 +353699,6 @@ "plasmid_name": "pLenti6.3/NS4A-2K", "sequence-type": "addgene-full", "addgene_id": "120838", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -333510,7 +353757,10 @@ "plasmid_name": "TFORF3342", "sequence-type": "addgene-full", "addgene_id": "144818", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -333570,7 +353820,10 @@ "plasmid_name": "pDONR223_MAPK7_p.L806R", "sequence-type": "addgene-full", "addgene_id": "82865", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -333599,7 +353852,10 @@ "plasmid_name": "pME-Cavin4b_PRDmt", "sequence-type": "addgene-full", "addgene_id": "176017", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201905065", + "https://www.ncbi.nlm.nih.gov/pubmed/34633413" + ], "kit": null, "att_sites": [ "attL1", @@ -333631,7 +353887,10 @@ "plasmid_name": "pDONR223_STAG2_p.P572S", "sequence-type": "addgene-full", "addgene_id": "81598", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -333663,7 +353922,10 @@ "plasmid_name": "pDONR223_MTM1_p.P226S", "sequence-type": "addgene-full", "addgene_id": "81678", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -333695,7 +353957,6 @@ "plasmid_name": "Hs.KRAS4a G12D", "sequence-type": "depositor-full", "addgene_id": "83168", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -333720,7 +353981,10 @@ "plasmid_name": "pCM3.08", "sequence-type": "depositor-full", "addgene_id": "19405", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -333743,7 +354007,10 @@ "plasmid_name": "p3E-EHD2a", "sequence-type": "addgene-full", "addgene_id": "109568", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -333774,7 +354041,10 @@ "plasmid_name": "pDONR223-ZNF79", "sequence-type": "addgene-full", "addgene_id": "88374", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -333803,7 +354073,6 @@ "plasmid_name": "R777-E111 Hs.IRS2", "sequence-type": "depositor-full", "addgene_id": "70395", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -333831,7 +354100,10 @@ "plasmid_name": "pLenti.PGK.blast-Renilla_Luciferase", "sequence-type": "addgene-full", "addgene_id": "74444", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aab4138", + "https://www.ncbi.nlm.nih.gov/pubmed/26816379" + ], "kit": null, "att_sites": [ "attB1", @@ -333890,7 +354162,10 @@ "plasmid_name": "W118-1_hZBTB7B_R49H", "sequence-type": "addgene-full", "addgene_id": "180382", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "att_sites": [ "attB1", @@ -333953,7 +354228,10 @@ "plasmid_name": "pPN10-gDM1d", "sequence-type": "addgene-full", "addgene_id": "114387", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms13272", + "https://www.ncbi.nlm.nih.gov/pubmed/27827362" + ], "kit": null, "att_sites": [ "attB2" @@ -334001,7 +354279,10 @@ "plasmid_name": "251 pTol2Dest", "sequence-type": "depositor-full", "addgene_id": "73484", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -334048,7 +354329,9 @@ "plasmid_name": "pFLIP37", "sequence-type": "depositor-full", "addgene_id": "65505", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -334086,7 +354369,10 @@ "plasmid_name": "pDONR223_CXCR4_WT", "sequence-type": "addgene-full", "addgene_id": "81957", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -334119,7 +354405,10 @@ "plasmid_name": "pT3TS-Dest_R1-R3", "sequence-type": "addgene-full", "addgene_id": "140878", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attR1", @@ -334163,7 +354452,10 @@ "plasmid_name": "pDONR221-SLC17A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161126", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -334194,7 +354486,10 @@ "plasmid_name": "pinducer 20 DN-KASH\u0394PPPL", "sequence-type": "addgene-full", "addgene_id": "129280", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2019.07.021", + "https://www.ncbi.nlm.nih.gov/pubmed/31402305" + ], "kit": null, "att_sites": [ "attB1", @@ -334250,7 +354545,10 @@ "plasmid_name": "pDONR223_SMAD4_p.E134K", "sequence-type": "addgene-full", "addgene_id": "81503", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -334282,7 +354580,10 @@ "plasmid_name": "pMuLE ENTR CMV iRFP R4-R3", "sequence-type": "depositor-full", "addgene_id": "62158", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -334317,7 +354618,10 @@ "plasmid_name": "actc1b-mKate2-rab24", "sequence-type": "addgene-full", "addgene_id": "109613", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -334359,7 +354663,10 @@ "plasmid_name": "pDON223 Spike A701V", "sequence-type": "addgene-full", "addgene_id": "180062", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -334388,7 +354695,10 @@ "plasmid_name": "TFORF3261", "sequence-type": "addgene-full", "addgene_id": "144737", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -334448,7 +354758,6 @@ "plasmid_name": "pDONR223 CASP1[CARD]-mSG2 (inflammasome reporter)", "sequence-type": "addgene-full", "addgene_id": "228043", - "references": [], "kit": null, "file": "data/addgene_plasmids/228043.addgene-full.gb" }, @@ -334457,7 +354766,10 @@ "plasmid_name": "pcDNA3_SP-GLP1R-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194381", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -334514,7 +354826,10 @@ "plasmid_name": "PB-TAC-MKOS", "sequence-type": "depositor-full", "addgene_id": "80484", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "att_sites": [ "attB1", @@ -334567,7 +354882,10 @@ "plasmid_name": "TFORF3407", "sequence-type": "addgene-full", "addgene_id": "144883", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -334627,7 +354945,10 @@ "plasmid_name": "pNJB99", "sequence-type": "depositor-full", "addgene_id": "51521", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attL1", @@ -334659,7 +354980,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189875", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -334724,7 +355044,10 @@ "plasmid_name": "pDONR223_PTEN_WT", "sequence-type": "addgene-full", "addgene_id": "81737", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -334756,7 +355079,10 @@ "plasmid_name": "p{Mhc-F4-678-DsRed::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182186", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -334797,7 +355123,10 @@ "plasmid_name": "pDONR223_ELF1_WT", "sequence-type": "addgene-full", "addgene_id": "81883", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -334829,7 +355158,10 @@ "plasmid_name": "pDONR221-SLC35C2_STOP", "sequence-type": "addgene-full", "addgene_id": "161312", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -334859,7 +355191,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp1", "sequence-type": "addgene-full", "addgene_id": "168931", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168931.addgene-full.gb" }, @@ -334868,7 +355203,10 @@ "plasmid_name": "pHAGE-BRAF-L678I", "sequence-type": "addgene-full", "addgene_id": "116183", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -334923,7 +355261,10 @@ "plasmid_name": "pDEST-ORF-V1", "sequence-type": "depositor-full", "addgene_id": "73637", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaf0793", + "https://www.ncbi.nlm.nih.gov/pubmed/27405979" + ], "kit": null, "att_sites": [ "attR1", @@ -334961,7 +355302,10 @@ "plasmid_name": "CLP1", "sequence-type": "addgene-full", "addgene_id": "155462", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -335004,7 +355348,10 @@ "plasmid_name": "TFORF3027", "sequence-type": "addgene-full", "addgene_id": "144503", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -335064,7 +355411,10 @@ "plasmid_name": "pHAGE-EGFR-H835L", "sequence-type": "addgene-full", "addgene_id": "116263", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -335118,7 +355468,10 @@ "plasmid_name": "PPAPDC2", "sequence-type": "addgene-full", "addgene_id": "155836", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -335162,7 +355515,10 @@ "plasmid_name": "TFORF3481", "sequence-type": "addgene-full", "addgene_id": "144957", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -335222,7 +355578,10 @@ "plasmid_name": "pBi2FC-N-MPK12-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216139", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attB1", @@ -335272,7 +355631,10 @@ "plasmid_name": "R620-M07-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-541)-His6 E484K", "sequence-type": "addgene-full", "addgene_id": "170193", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -335326,7 +355688,9 @@ "plasmid_name": "pMpGWB114", "sequence-type": "depositor-full", "addgene_id": "68568", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -335373,7 +355737,10 @@ "plasmid_name": "p35S::SP-mCherry-GFP-HDEL", "sequence-type": "addgene-full", "addgene_id": "159097", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "att_sites": [ "attB1", @@ -335421,7 +355788,10 @@ "plasmid_name": "pDONR221-SLC22A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161069", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -335453,7 +355823,10 @@ "plasmid_name": "beta-catenin (S33A, S37A, T41A, S45A)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64613", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attB1", @@ -335513,7 +355886,10 @@ "plasmid_name": "LC101: pMVP/PB/Neo-DEST", "sequence-type": "addgene-full", "addgene_id": "121875", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -335557,7 +355933,10 @@ "plasmid_name": "pDEST-FRT/TO-eGFP-REV7", "sequence-type": "addgene-full", "addgene_id": "114128", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "att_sites": [ "attB1", @@ -335603,7 +355982,10 @@ "plasmid_name": "TFORF3202", "sequence-type": "addgene-full", "addgene_id": "144678", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -335663,7 +356045,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-ADCK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158195", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -335729,7 +356110,10 @@ "plasmid_name": "pHAGE-AXL-G736W", "sequence-type": "addgene-full", "addgene_id": "116118", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -335778,7 +356162,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP12_nostop", "sequence-type": "addgene-full", "addgene_id": "149314", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -335807,7 +356194,10 @@ "plasmid_name": "pcDNA3.1/nV5-DEST-beta catenin", "sequence-type": "addgene-full", "addgene_id": "20140", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.200805041", + "https://www.ncbi.nlm.nih.gov/pubmed/19075109" + ], "kit": null, "att_sites": [ "attB1", @@ -335859,7 +356249,6 @@ "plasmid_name": "R777-E157 Hs.PDGFRB", "sequence-type": "depositor-full", "addgene_id": "70441", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -335888,7 +356277,10 @@ "plasmid_name": "TFORF3122", "sequence-type": "addgene-full", "addgene_id": "144598", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -335948,7 +356340,10 @@ "plasmid_name": "pMOS015: mito-roGFP2-Orp1 H2O2 oxidation sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163059", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -336012,7 +356407,10 @@ "plasmid_name": "pDONR223_TMPO_WT", "sequence-type": "addgene-full", "addgene_id": "81818", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -336044,7 +356442,10 @@ "plasmid_name": "pDONR221-SLC9B1_STOP", "sequence-type": "addgene-full", "addgene_id": "161389", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -336075,7 +356476,10 @@ "plasmid_name": "TFORF3349", "sequence-type": "addgene-full", "addgene_id": "144825", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -336135,7 +356539,10 @@ "plasmid_name": "pHAGE-EGFR-T854A", "sequence-type": "addgene-full", "addgene_id": "116311", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -336189,7 +356596,10 @@ "plasmid_name": "pQLinkHD_LSSmOrange", "sequence-type": "addgene-full", "addgene_id": "118860", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "att_sites": [ "attB1", @@ -336227,7 +356637,10 @@ "plasmid_name": "pDONR221_SLC22A2", "sequence-type": "addgene-full", "addgene_id": "131964", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms23031203", + "https://www.ncbi.nlm.nih.gov/pubmed/35163125" + ], "kit": null, "att_sites": [ "attL1", @@ -336258,7 +356671,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-5", "sequence-type": "depositor-full", "addgene_id": "46708", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -336308,7 +356724,10 @@ "plasmid_name": "pWS-TK3", "sequence-type": "addgene-full", "addgene_id": "20349", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "att_sites": [ "attR1", @@ -336348,7 +356767,10 @@ "plasmid_name": "TFORF3315", "sequence-type": "addgene-full", "addgene_id": "144791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -336408,7 +356830,10 @@ "plasmid_name": "pEBTetDBl-CLIP-POC5", "sequence-type": "addgene-full", "addgene_id": "136836", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -336451,7 +356876,6 @@ "plasmid_name": "pDEST27-GST-hADAM10", "sequence-type": "addgene-full", "addgene_id": "189553", - "references": [], "kit": null, "file": "data/addgene_plasmids/189553.addgene-full.gb" }, @@ -336460,7 +356884,10 @@ "plasmid_name": "pDONR221-SLC25A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161180", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -336491,7 +356918,10 @@ "plasmid_name": "pDONR221-kcnj19a", "sequence-type": "addgene-full", "addgene_id": "173148", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -336522,7 +356952,10 @@ "plasmid_name": "pDONR221-SLC38A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161260", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -336553,7 +356986,10 @@ "plasmid_name": "pDONR223_SPOP_p.E47A", "sequence-type": "addgene-full", "addgene_id": "81645", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -336585,7 +357021,10 @@ "plasmid_name": "pYPQ144", "sequence-type": "addgene-full", "addgene_id": "69296", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL2", @@ -336617,7 +357056,6 @@ "plasmid_name": "p667-UBC-CDC42BPA-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189907", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -336682,7 +357120,6 @@ "plasmid_name": "pCWX-R4DESTR2-PGK-Tk:Sh", "sequence-type": "addgene-full", "addgene_id": "114321", - "references": [], "kit": null, "att_sites": [ "attR2", @@ -336738,7 +357175,10 @@ "plasmid_name": "TFORF2995", "sequence-type": "addgene-full", "addgene_id": "144471", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -336798,7 +357238,10 @@ "plasmid_name": "p3E-FAPP1", "sequence-type": "addgene-full", "addgene_id": "109555", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -336829,7 +357272,10 @@ "plasmid_name": "DDX21", "sequence-type": "addgene-full", "addgene_id": "155510", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -336872,7 +357318,10 @@ "plasmid_name": "Ad-shMKP-3", "sequence-type": "addgene-full", "addgene_id": "131530", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "att_sites": [ "attB1", @@ -336902,7 +357351,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp14", "sequence-type": "addgene-full", "addgene_id": "168843", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -336931,7 +357383,10 @@ "plasmid_name": "MAC3_C_CCDC22(T17A)", "sequence-type": "addgene-full", "addgene_id": "209694", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -336975,7 +357430,6 @@ "plasmid_name": "pDONR221-WT-long-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "192097", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -337006,7 +357460,10 @@ "plasmid_name": "pLenti CMV Puro DHFR.dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134729", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "att_sites": [ "attB1", @@ -337069,7 +357526,6 @@ "plasmid_name": "pAM-35s-Lyk5-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102389", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -337103,7 +357559,10 @@ "plasmid_name": "pDEST-Spe3-RfA-HA", "sequence-type": "addgene-full", "addgene_id": "186374", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -337148,7 +357607,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP14", "sequence-type": "addgene-full", "addgene_id": "154412", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -337178,7 +357640,10 @@ "plasmid_name": "pDONR223_PIK3R3_p.R245C", "sequence-type": "addgene-full", "addgene_id": "82777", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -337207,7 +357672,10 @@ "plasmid_name": "Bact2-APEX2-GBP in pDEST-Tol2-pA2-acrys-cherry", "sequence-type": "depositor-full", "addgene_id": "67668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -337252,7 +357720,10 @@ "plasmid_name": "pAG305GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14258", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -337308,7 +357779,10 @@ "plasmid_name": "Munc18cF119E-pDEST27", "sequence-type": "addgene-full", "addgene_id": "85625", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1600-0854.2006.00474.x", + "https://www.ncbi.nlm.nih.gov/pubmed/16899085" + ], "kit": null, "att_sites": [ "attB1", @@ -337356,7 +357830,9 @@ "plasmid_name": "pDest-pol2-Smarcd1-Myc", "sequence-type": "addgene-full", "addgene_id": "227716", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.01.24.577061" + ], "kit": null, "file": "data/addgene_plasmids/227716.addgene-full.gb" }, @@ -337365,7 +357841,10 @@ "plasmid_name": "pLenti-FRA1", "sequence-type": "addgene-full", "addgene_id": "188665", - "references": [], + "references": [ + "https://doi.org/10.1007/s00018-022-04638-y", + "https://www.ncbi.nlm.nih.gov/pubmed/36534167" + ], "kit": null, "att_sites": [ "attB1", @@ -337425,7 +357904,6 @@ "plasmid_name": "p42Nat 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58557", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -337481,7 +357959,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 S_stop", "sequence-type": "addgene-full", "addgene_id": "168558", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -337511,7 +357992,10 @@ "plasmid_name": "pAFMW-Nbr-CM", "sequence-type": "addgene-full", "addgene_id": "188585", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -337541,7 +358025,10 @@ "plasmid_name": "LC701: pMVP (L3-L2) eCFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121767", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -337578,7 +358065,10 @@ "plasmid_name": "pDONR223_EGFR_p.ELREA746del_T790M", "sequence-type": "addgene-full", "addgene_id": "82917", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -337608,7 +358098,10 @@ "plasmid_name": "pMuLE (L1-L4) 4X PRE", "sequence-type": "addgene-full", "addgene_id": "206167", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "att_sites": [ "attL1", @@ -337639,7 +358132,10 @@ "plasmid_name": "pDONR223_CDK17_p.M85I", "sequence-type": "addgene-full", "addgene_id": "81471", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -337671,7 +358167,10 @@ "plasmid_name": "IZ501: pMVP/Lenti-DEST", "sequence-type": "addgene-full", "addgene_id": "121848", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -337725,7 +358224,10 @@ "plasmid_name": "pEV1.05", "sequence-type": "depositor-full", "addgene_id": "37498", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.047654", + "https://www.ncbi.nlm.nih.gov/pubmed/20335358" + ], "kit": null, "file": "data/addgene_plasmids/37498.depositor-full.gb" }, @@ -337734,7 +358236,10 @@ "plasmid_name": "TFORF3169", "sequence-type": "addgene-full", "addgene_id": "144645", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -337794,7 +358299,10 @@ "plasmid_name": "actc1b-mKate2-Rab19", "sequence-type": "addgene-full", "addgene_id": "109761", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -337836,7 +358344,10 @@ "plasmid_name": "pMOS008E: Entry vector for: GCaMP6F calcium sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163064", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -337872,7 +358383,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 S", "sequence-type": "addgene-full", "addgene_id": "149329", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -337901,7 +358415,9 @@ "plasmid_name": "pMpGWB406", "sequence-type": "depositor-full", "addgene_id": "68671", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -337954,7 +358470,10 @@ "plasmid_name": "pDONR223_FGF1_WT", "sequence-type": "addgene-full", "addgene_id": "81825", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -337987,7 +358506,10 @@ "plasmid_name": "pDONR223_SMARCB1_WT", "sequence-type": "addgene-full", "addgene_id": "81791", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -338016,7 +358538,10 @@ "plasmid_name": "pAG414GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14216", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -338077,7 +358602,10 @@ "plasmid_name": "MSCV-FOXP3-IRES-Thy1.1", "sequence-type": "addgene-full", "addgene_id": "17443", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.05.042", + "https://www.ncbi.nlm.nih.gov/pubmed/16873067" + ], "kit": null, "file": "data/addgene_plasmids/17443.addgene-full.gb" }, @@ -338086,7 +358614,10 @@ "plasmid_name": "pCAG-eGFP-pA", "sequence-type": "depositor-full", "addgene_id": "107281", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03044-y", + "https://www.ncbi.nlm.nih.gov/pubmed/29507284" + ], "kit": null, "att_sites": [ "attB1", @@ -338136,7 +358667,10 @@ "plasmid_name": "pDONR223_GPR156_WT", "sequence-type": "addgene-full", "addgene_id": "81822", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -338168,7 +358702,10 @@ "plasmid_name": "pDONR223_RAB42_WT", "sequence-type": "addgene-full", "addgene_id": "81796", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -338200,7 +358737,10 @@ "plasmid_name": "MultiMate-Cell-cycle", "sequence-type": "addgene-full", "addgene_id": "206280", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206280.addgene-full.gb" }, @@ -338209,7 +358749,10 @@ "plasmid_name": "pMOS010E: Entry vector for: CheRiff-eGFP channelrhodopsin (plasma membrane)", "sequence-type": "addgene-full", "addgene_id": "163063", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -338239,7 +358782,10 @@ "plasmid_name": "pEn-Chimera", "sequence-type": "depositor-full", "addgene_id": "61432", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12554", + "https://www.ncbi.nlm.nih.gov/pubmed/24836556" + ], "kit": null, "att_sites": [ "attB2", @@ -338281,7 +358827,10 @@ "plasmid_name": "actc1b-mKate2-Rab38c", "sequence-type": "addgene-full", "addgene_id": "109766", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -338323,7 +358872,10 @@ "plasmid_name": "TFORF3166", "sequence-type": "addgene-full", "addgene_id": "144642", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -338383,7 +358935,10 @@ "plasmid_name": "pDONR223_ACVR2A_p.A381V", "sequence-type": "addgene-full", "addgene_id": "81476", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -338415,7 +358970,10 @@ "plasmid_name": "pDONR221-SLC16A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161053", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -338446,7 +359004,10 @@ "plasmid_name": "IZ702: pMVP (L3-L2) myc epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121760", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -338481,7 +359042,10 @@ "plasmid_name": "pCW-GFP-CtIP-T847E", "sequence-type": "depositor-full", "addgene_id": "71111", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1", @@ -338540,7 +359104,10 @@ "plasmid_name": "pHAGE-EGFR-G983R", "sequence-type": "addgene-full", "addgene_id": "116259", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -338594,7 +359161,6 @@ "plasmid_name": "R777-E029 Hs.CNKSR2", "sequence-type": "depositor-full", "addgene_id": "70313", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -338622,7 +359188,10 @@ "plasmid_name": "CLK1", "sequence-type": "addgene-full", "addgene_id": "155458", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -338665,7 +359234,10 @@ "plasmid_name": "TFORF3063", "sequence-type": "addgene-full", "addgene_id": "144539", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -338725,7 +359297,10 @@ "plasmid_name": "pDONR221-ZNF879", "sequence-type": "depositor-full", "addgene_id": "101623", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -338756,7 +359331,10 @@ "plasmid_name": "pKRG3-mU6-PUb-3xFLAG-hSpCas9", "sequence-type": "addgene-full", "addgene_id": "162161", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-80436-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33436886" + ], "kit": null, "att_sites": [ "attB2" @@ -338784,7 +359362,10 @@ "plasmid_name": "pcDNA6.2EmGFP-DAXX", "sequence-type": "addgene-full", "addgene_id": "169726", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "att_sites": [ "attB1", @@ -338836,7 +359417,6 @@ "plasmid_name": "R777-E205 Hs.PTEN", "sequence-type": "depositor-full", "addgene_id": "70489", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -338864,7 +359444,10 @@ "plasmid_name": "pDONR221-SLC8A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161328", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -338895,7 +359478,10 @@ "plasmid_name": "pGWB428", "sequence-type": "depositor-full", "addgene_id": "74822", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -338945,7 +359531,10 @@ "plasmid_name": "pcDNA3.1_nV5-TAOK2", "sequence-type": "addgene-full", "addgene_id": "173000", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -338996,7 +359585,10 @@ "plasmid_name": "peft-3::cas-9::tbb-2 3'UTR", "sequence-type": "addgene-full", "addgene_id": "48960", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkt805", + "https://www.ncbi.nlm.nih.gov/pubmed/24013562" + ], "kit": null, "att_sites": [ "attB1", @@ -339034,7 +359626,10 @@ "plasmid_name": "actc1b-mKate2-rab36", "sequence-type": "addgene-full", "addgene_id": "109629", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -339076,7 +359671,10 @@ "plasmid_name": "pDON223 Spike T1027I", "sequence-type": "addgene-full", "addgene_id": "180058", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -339105,7 +359703,10 @@ "plasmid_name": "LIIc R 5-6", "sequence-type": "depositor-full", "addgene_id": "54373", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "att_sites": [ "attR1", @@ -339137,7 +359738,10 @@ "plasmid_name": "pDONR223_ATF2_p.T339A", "sequence-type": "addgene-full", "addgene_id": "82770", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -339166,7 +359770,10 @@ "plasmid_name": "pDONR223_PIK3R4_p.E1209K", "sequence-type": "addgene-full", "addgene_id": "81539", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -339198,7 +359805,10 @@ "plasmid_name": "MLKS2del4exp", "sequence-type": "addgene-full", "addgene_id": "130861", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "att_sites": [ "attB1", @@ -339234,7 +359844,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-S", "sequence-type": "addgene-full", "addgene_id": "154415", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -339264,7 +359877,6 @@ "plasmid_name": "474 p5E-basprom", "sequence-type": "depositor-full", "addgene_id": "31158", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -339295,7 +359907,10 @@ "plasmid_name": "MAC3_C_VPS35L(A830T)", "sequence-type": "addgene-full", "addgene_id": "209693", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -339339,7 +359954,10 @@ "plasmid_name": "pDEST-Spe3-HA-RfA", "sequence-type": "addgene-full", "addgene_id": "186373", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -339384,7 +360002,10 @@ "plasmid_name": "pAG413GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14189", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -339446,7 +360067,10 @@ "plasmid_name": "p3E-SERCA1", "sequence-type": "addgene-full", "addgene_id": "109552", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -339478,7 +360102,10 @@ "plasmid_name": "TFORF3000", "sequence-type": "addgene-full", "addgene_id": "144476", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -339538,7 +360165,10 @@ "plasmid_name": "pDONR221-SLC30A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161267", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161267.addgene-full.gb" }, @@ -339547,7 +360177,6 @@ "plasmid_name": "p667-UBC-SBK3-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189900", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -339613,7 +360242,10 @@ "plasmid_name": "pDONR223_SPOP_p.F102C", "sequence-type": "addgene-full", "addgene_id": "81642", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -339645,7 +360277,10 @@ "plasmid_name": "pGGW_SM_BglII", "sequence-type": "depositor-full", "addgene_id": "49314", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -339682,7 +360317,10 @@ "plasmid_name": "pEBTet-\u03b2-tubulin_SNAP", "sequence-type": "addgene-full", "addgene_id": "136831", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -339729,7 +360367,6 @@ "plasmid_name": "458 p5E-uasE1b", "sequence-type": "depositor-full", "addgene_id": "26026", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -339764,7 +360401,10 @@ "plasmid_name": "pDONR223 SCAF8_isoC_CRISPR resistant", "sequence-type": "addgene-full", "addgene_id": "122466", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "att_sites": [ "attB1", @@ -339793,7 +360433,10 @@ "plasmid_name": "pDONR221-SLC18B1_STOP", "sequence-type": "addgene-full", "addgene_id": "161187", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -339824,7 +360467,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hADAM10(aa1-213)", "sequence-type": "addgene-full", "addgene_id": "189554", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -339891,7 +360533,10 @@ "plasmid_name": "pEBTetD-SNAP-Centrin2", "sequence-type": "addgene-full", "addgene_id": "136785", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -339936,7 +360581,10 @@ "plasmid_name": "pE5c", "sequence-type": "depositor-full", "addgene_id": "17465", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -339964,7 +360612,10 @@ "plasmid_name": "TFORF3346", "sequence-type": "addgene-full", "addgene_id": "144822", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -340024,7 +360675,10 @@ "plasmid_name": "pGRG37", "sequence-type": "depositor-full", "addgene_id": "16667", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2180-6-39", + "https://www.ncbi.nlm.nih.gov/pubmed/16646962" + ], "kit": null, "att_sites": [ "attR1", @@ -340059,7 +360713,10 @@ "plasmid_name": "pHAGE-EGFR-V769L", "sequence-type": "addgene-full", "addgene_id": "116316", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -340113,7 +360770,10 @@ "plasmid_name": "pGC183", "sequence-type": "depositor-full", "addgene_id": "19630", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -340157,7 +360817,10 @@ "plasmid_name": "pAG303GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14374", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -340215,7 +360878,10 @@ "plasmid_name": "pDONR221_SLC22A11", "sequence-type": "addgene-full", "addgene_id": "131963", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -340246,7 +360912,10 @@ "plasmid_name": "pAAV2-SynTetOff-palGFP", "sequence-type": "addgene-full", "addgene_id": "190232", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "att_sites": [ "attB1", @@ -340288,7 +360957,10 @@ "plasmid_name": "pCZGY2844", "sequence-type": "addgene-full", "addgene_id": "87760", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attB1", @@ -340329,7 +361001,9 @@ "plasmid_name": "p3E-mCherry-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82592", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -340365,7 +361039,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP10_nostop", "sequence-type": "addgene-full", "addgene_id": "149313", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -340394,7 +361071,10 @@ "plasmid_name": "p3E-BIN1_tv8", "sequence-type": "addgene-full", "addgene_id": "126574", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201905065", + "https://www.ncbi.nlm.nih.gov/pubmed/34633413" + ], "kit": null, "att_sites": [ "attL3", @@ -340425,7 +361105,10 @@ "plasmid_name": "pGP4G-TPLRD1-ccdB", "sequence-type": "depositor-full", "addgene_id": "83877", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1324147111", + "https://www.ncbi.nlm.nih.gov/pubmed/24979769" + ], "kit": null, "att_sites": [ "attR1", @@ -340467,7 +361150,6 @@ "plasmid_name": "p667-UBC-PHKG1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158192", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -340532,7 +361214,10 @@ "plasmid_name": "LB801: pMVP/PB/eCFP-DEST", "sequence-type": "addgene-full", "addgene_id": "121872", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -340577,7 +361262,10 @@ "plasmid_name": "R620-M08-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(318-529)-3C-His8-SBP E484K", "sequence-type": "addgene-full", "addgene_id": "170194", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -340633,7 +361321,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 M_stop", "sequence-type": "addgene-full", "addgene_id": "168562", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -340662,7 +361353,10 @@ "plasmid_name": "pEN_TT 3xFLAG-NUP37", "sequence-type": "addgene-full", "addgene_id": "192299", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -340691,7 +361385,10 @@ "plasmid_name": "pEN41A-T38S38", "sequence-type": "depositor-full", "addgene_id": "49524", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "att_sites": [ "attL4", @@ -340718,7 +361415,10 @@ "plasmid_name": "TFORF3474", "sequence-type": "addgene-full", "addgene_id": "144950", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -340778,7 +361478,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp8", "sequence-type": "addgene-full", "addgene_id": "168936", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -340807,7 +361510,10 @@ "plasmid_name": "pHAGE-BRAF-M517I", "sequence-type": "addgene-full", "addgene_id": "116184", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -340862,7 +361568,10 @@ "plasmid_name": "TFORF3028", "sequence-type": "addgene-full", "addgene_id": "144504", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -340922,7 +361631,10 @@ "plasmid_name": "pCS2-HA-Mettl3", "sequence-type": "addgene-full", "addgene_id": "196262", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2022.04.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35512709" + ], "kit": null, "att_sites": [ "attB1", @@ -340962,7 +361674,10 @@ "plasmid_name": "pDONR223_HTR3B_p.I118T", "sequence-type": "addgene-full", "addgene_id": "81730", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -340994,7 +361709,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK6_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189872", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -341060,7 +361774,10 @@ "plasmid_name": "pDONR221-SLC2A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161315", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -341091,7 +361808,10 @@ "plasmid_name": "pDONR223_CPZ_WT", "sequence-type": "addgene-full", "addgene_id": "81884", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -341123,7 +361843,10 @@ "plasmid_name": "p{3P3-mTurquoise::FRT-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182181", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -341165,7 +361888,10 @@ "plasmid_name": "actc1b-mKate2-rab25a", "sequence-type": "addgene-full", "addgene_id": "109614", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -341207,7 +361933,10 @@ "plasmid_name": "pclbw-mitoTagRFP", "sequence-type": "addgene-full", "addgene_id": "58425", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/24703695" + ], "kit": null, "att_sites": [ "attB1", @@ -341247,7 +361976,10 @@ "plasmid_name": "pDONR223-MCU", "sequence-type": "depositor-full", "addgene_id": "31726", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "att_sites": [ "attL1", @@ -341276,7 +362008,10 @@ "plasmid_name": "pcDNA3_attR1-ORF-attR2-V2R-NTEV-TCS-GV-2xHA_DEST", "sequence-type": "addgene-full", "addgene_id": "194386", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attR1", @@ -341338,7 +362073,6 @@ "plasmid_name": "pLentiUBC CASP1[CARD]-mSG2 (inflammasome reporter)", "sequence-type": "addgene-full", "addgene_id": "228044", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -341400,7 +362134,10 @@ "plasmid_name": "TFORF3408", "sequence-type": "addgene-full", "addgene_id": "144884", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -341460,7 +362197,10 @@ "plasmid_name": "pCMU-PERr", "sequence-type": "depositor-full", "addgene_id": "61202", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -341505,7 +362245,10 @@ "plasmid_name": "pDONR221-SLC10A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161121", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -341536,7 +362279,10 @@ "plasmid_name": "pDONR223_WBSCR17_p.S194R", "sequence-type": "addgene-full", "addgene_id": "81504", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -341568,7 +362314,10 @@ "plasmid_name": "IG001: pMVP (L1-L4) TBG promoter", "sequence-type": "addgene-full", "addgene_id": "121689", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -341600,7 +362349,10 @@ "plasmid_name": "pFRT-TO-DEST", "sequence-type": "addgene-full", "addgene_id": "106348", - "references": [], + "references": [ + "https://doi.org/10.1038/nature21690", + "https://www.ncbi.nlm.nih.gov/pubmed/28297718" + ], "kit": null, "att_sites": [ "attR1", @@ -341648,7 +362400,10 @@ "plasmid_name": "pDONR223_STAT6_WT", "sequence-type": "addgene-full", "addgene_id": "81950", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -341680,7 +362435,10 @@ "plasmid_name": "pKG-GW1-RER2", "sequence-type": "addgene-full", "addgene_id": "203170", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "att_sites": [ "attB1", @@ -341710,7 +362468,10 @@ "plasmid_name": "pBDPR", "sequence-type": "depositor-full", "addgene_id": "61598", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2014.07.012", + "https://www.ncbi.nlm.nih.gov/pubmed/25123314" + ], "kit": null, "att_sites": [ "attR1", @@ -341740,7 +362501,6 @@ "plasmid_name": "pCW57.1_TStrp_HA_Ct", "sequence-type": "addgene-full", "addgene_id": "194066", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -341798,7 +362558,10 @@ "plasmid_name": "W118-1_hRSK3(RPS6KA2)_K91A_K444A", "sequence-type": "addgene-full", "addgene_id": "180385", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "att_sites": [ "attB1", @@ -341860,7 +362623,10 @@ "plasmid_name": "pSLIK-GFP", "sequence-type": "addgene-full", "addgene_id": "66844", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + ], "kit": null, "att_sites": [ "attB1", @@ -341929,7 +362695,10 @@ "plasmid_name": "pGWB2-CYCD3;1", "sequence-type": "addgene-full", "addgene_id": "140750", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.16309", + "https://www.ncbi.nlm.nih.gov/pubmed/31679162" + ], "kit": null, "att_sites": [ "attB1", @@ -341973,7 +362742,10 @@ "plasmid_name": "pDONR223_STK11_p.G251F", "sequence-type": "addgene-full", "addgene_id": "82862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -342002,7 +362774,6 @@ "plasmid_name": "R777-E239 Hs.RASGRF1", "sequence-type": "depositor-full", "addgene_id": "70523", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -342030,7 +362801,10 @@ "plasmid_name": "pAG415GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14290", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -342091,7 +362865,10 @@ "plasmid_name": "pAG416-Gal-GA50", "sequence-type": "depositor-full", "addgene_id": "84903", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "att_sites": [ "attB1", @@ -342146,7 +362923,10 @@ "plasmid_name": "pRATIO2214", "sequence-type": "addgene-full", "addgene_id": "141303", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -342195,7 +362975,10 @@ "plasmid_name": "pHAGE-PIK3CA-H1047Y", "sequence-type": "addgene-full", "addgene_id": "116501", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -342245,7 +363028,10 @@ "plasmid_name": "pMXs-ms-c-Myc-V394D", "sequence-type": "depositor-full", "addgene_id": "50775", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "att_sites": [ "attB1", @@ -342273,7 +363059,10 @@ "plasmid_name": "pDONR221_SLC45A1", "sequence-type": "addgene-full", "addgene_id": "132289", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -342304,7 +363093,10 @@ "plasmid_name": "pAAV-Gateway", "sequence-type": "addgene-full", "addgene_id": "32671", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attR1", @@ -342340,7 +363132,10 @@ "plasmid_name": "pDEST(frt)(ATG_V5-APEX2_noSTOP)", "sequence-type": "addgene-full", "addgene_id": "168207", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-018-0220-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30478324" + ], "kit": null, "att_sites": [ "attR1", @@ -342389,7 +363184,10 @@ "plasmid_name": "pCM5.45", "sequence-type": "depositor-full", "addgene_id": "19387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -342420,7 +363218,10 @@ "plasmid_name": "pDe_Cas9_KANA_R390a", "sequence-type": "addgene-full", "addgene_id": "173758", - "references": [], + "references": [ + "https://doi.org/10.1093/hr/uhac147", + "https://www.ncbi.nlm.nih.gov/pubmed/36072839" + ], "kit": null, "att_sites": [ "attB1", @@ -342465,7 +363266,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj1b-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164946", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB1", @@ -342513,7 +363317,10 @@ "plasmid_name": "Flag-HA-USP14", "sequence-type": "addgene-full", "addgene_id": "22569", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -342558,7 +363365,9 @@ "plasmid_name": "pDRF'- AmTryoshka1;3-GS-L255I", "sequence-type": "addgene-full", "addgene_id": "100966", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "att_sites": [ "attB1", @@ -342602,7 +363411,10 @@ "plasmid_name": "pQLinkHD-SYNZIP5", "sequence-type": "depositor-full", "addgene_id": "80661", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "att_sites": [ "attB1", @@ -342638,7 +363450,10 @@ "plasmid_name": "pT2-cryR;nrp1bCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90134", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -342686,7 +363501,10 @@ "plasmid_name": "mpeg:lamp1b-mCherry-stop; cmlc2:GFP", "sequence-type": "addgene-full", "addgene_id": "213739", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abp8321", + "https://www.ncbi.nlm.nih.gov/pubmed/36044568" + ], "kit": null, "att_sites": [ "attB1", @@ -342731,7 +363549,10 @@ "plasmid_name": "Silene_vulgaris _TyrRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202658", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "att_sites": [ "attB1", @@ -342770,7 +363591,10 @@ "plasmid_name": "ZFP36L2", "sequence-type": "addgene-full", "addgene_id": "156149", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -342813,7 +363637,10 @@ "plasmid_name": "pAG304GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14159", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -342872,7 +363699,10 @@ "plasmid_name": "TMPRSS2", "sequence-type": "addgene-full", "addgene_id": "53887", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "att_sites": [ "attB1", @@ -342911,7 +363741,6 @@ "plasmid_name": "Hs.KRAS4a G13D", "sequence-type": "depositor-full", "addgene_id": "83170", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -342936,7 +363765,6 @@ "plasmid_name": "His8:MBP-tev-Arg-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83385", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -342974,7 +363802,10 @@ "plasmid_name": "piggyBac_rtTA (4th_Gen)_Gateway_IRES_NGN2-2A-PURO_Synapsin-BirA. (pEHA1618)", "sequence-type": "addgene-full", "addgene_id": "209084", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/35688132" + ], "kit": null, "att_sites": [ "attR1", @@ -343039,7 +363870,10 @@ "plasmid_name": "FL-BCL2L1", "sequence-type": "depositor-full", "addgene_id": "78860", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "att_sites": [ "attB1", @@ -343092,7 +363926,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3B G120A", "sequence-type": "addgene-full", "addgene_id": "123093", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -343137,7 +363974,10 @@ "plasmid_name": "pDONR221-SLC34A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161242", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -343168,7 +364008,10 @@ "plasmid_name": "pShuttle-PR.Cre", "sequence-type": "addgene-full", "addgene_id": "192933", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "att_sites": [ "attL1", @@ -343207,7 +364050,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV NS2A", "sequence-type": "addgene-full", "addgene_id": "145363", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -343250,7 +364096,10 @@ "plasmid_name": "pDONR223_PDCD1LG2_WT", "sequence-type": "addgene-full", "addgene_id": "82287", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -343279,7 +364128,10 @@ "plasmid_name": "C238-E02: attB2r-BGHpolyA-attB3", "sequence-type": "addgene-full", "addgene_id": "162916", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -343309,7 +364161,10 @@ "plasmid_name": "pDONR223_TRAF5_WT", "sequence-type": "addgene-full", "addgene_id": "82167", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -343338,7 +364193,10 @@ "plasmid_name": "Flag-HA-GFP", "sequence-type": "addgene-full", "addgene_id": "22612", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22612.addgene-full.gb" }, @@ -343347,7 +364205,10 @@ "plasmid_name": "pDONR221_SLCO1B7", "sequence-type": "addgene-full", "addgene_id": "132212", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -343378,7 +364239,6 @@ "plasmid_name": "R777-E133 Hs.MLST8", "sequence-type": "depositor-full", "addgene_id": "70417", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -343406,7 +364266,10 @@ "plasmid_name": "Zed_vector_tol2_-2.1prox1a_1:EGFP_XCA:DsRed2", "sequence-type": "addgene-full", "addgene_id": "218205", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.202525", + "https://www.ncbi.nlm.nih.gov/pubmed/38722096" + ], "kit": null, "att_sites": [ "attB1", @@ -343458,7 +364321,10 @@ "plasmid_name": "pMuLE ENTR CMV eGFP L5-L2", "sequence-type": "depositor-full", "addgene_id": "62140", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -343496,7 +364362,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NRF3", "sequence-type": "addgene-full", "addgene_id": "207815", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -343562,7 +364431,10 @@ "plasmid_name": "pADH1-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209364", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -343607,7 +364479,10 @@ "plasmid_name": "pME-QS (L1-L2)", "sequence-type": "depositor-full", "addgene_id": "61378", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2013.06.012", + "https://www.ncbi.nlm.nih.gov/pubmed/23792917" + ], "kit": null, "att_sites": [ "attL1", @@ -343643,7 +364518,10 @@ "plasmid_name": "Active Wnt5A-V5", "sequence-type": "depositor-full", "addgene_id": "43813", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -343691,7 +364569,10 @@ "plasmid_name": "pDONR221_SLC25A11", "sequence-type": "addgene-full", "addgene_id": "132026", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -343722,7 +364603,6 @@ "plasmid_name": "pcDNA3-VenusFlag-hTICAM1", "sequence-type": "addgene-full", "addgene_id": "197631", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -343779,7 +364659,9 @@ "plasmid_name": "pMpGWB116", "sequence-type": "depositor-full", "addgene_id": "68570", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -343827,7 +364709,10 @@ "plasmid_name": "pCMU-LEr", "sequence-type": "depositor-full", "addgene_id": "61185", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -343873,7 +364758,10 @@ "plasmid_name": "pDONR223_RHOA_p.Y42S", "sequence-type": "addgene-full", "addgene_id": "81261", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -343906,7 +364794,10 @@ "plasmid_name": "Tol2-BetaActin-SecA5-YFP", "sequence-type": "addgene-full", "addgene_id": "105664", - "references": [], + "references": [ + "https://doi.org/10.3389/fimmu.2018.00607", + "https://www.ncbi.nlm.nih.gov/pubmed/29651289" + ], "kit": null, "att_sites": [ "attB1", @@ -343953,7 +364844,6 @@ "plasmid_name": "IDG_KCNG3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161644", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -344012,7 +364902,10 @@ "plasmid_name": "pDONR207-MUM2sp-Citrine-ADPG2", "sequence-type": "addgene-full", "addgene_id": "170725", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcab077", + "https://www.ncbi.nlm.nih.gov/pubmed/34059917" + ], "kit": null, "att_sites": [ "attL1", @@ -344040,7 +364933,10 @@ "plasmid_name": "pTW080", "sequence-type": "addgene-full", "addgene_id": "115928", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115928.addgene-full.gb" }, @@ -344049,7 +364945,10 @@ "plasmid_name": "pENTR-HLA-B0702-His", "sequence-type": "addgene-full", "addgene_id": "104849", - "references": [], + "references": [ + "https://doi.org/10.4049/immunohorizons.1800029", + "https://www.ncbi.nlm.nih.gov/pubmed/31022685" + ], "kit": null, "att_sites": [ "attL1", @@ -344081,7 +364980,6 @@ "plasmid_name": "pLEX307-TMPRSS2-blast", "sequence-type": "addgene-full", "addgene_id": "158458", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -344140,7 +365038,10 @@ "plasmid_name": "pHAGE-ERBB3", "sequence-type": "addgene-full", "addgene_id": "116735", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -344194,7 +365095,10 @@ "plasmid_name": "pLIX403_RPS2_APOBEC_HA_P2A_mRuby_Capture1", "sequence-type": "addgene-full", "addgene_id": "194703", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-021-01128-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33963355" + ], "kit": null, "att_sites": [ "attB1", @@ -344252,7 +365156,10 @@ "plasmid_name": "pAD-CMV-STAT5A-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83251", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "att_sites": [ "attB1", @@ -344295,7 +365202,10 @@ "plasmid_name": "MAC_C_HSP7C", "sequence-type": "addgene-full", "addgene_id": "111667", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -344340,7 +365250,10 @@ "plasmid_name": "pGWT35S-KOC207-MXMT", "sequence-type": "addgene-full", "addgene_id": "182730", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "att_sites": [ "attB1", @@ -344382,7 +365295,6 @@ "plasmid_name": "R777-E175 Hs.PIK3R3", "sequence-type": "depositor-full", "addgene_id": "70459", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -344410,7 +365322,10 @@ "plasmid_name": "pDest_U6_A2_CG2_typeEGF_gRNA", "sequence-type": "addgene-full", "addgene_id": "199386", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "att_sites": [ "attR3", @@ -344454,7 +365369,10 @@ "plasmid_name": "pWZL Neo Myr Flag PDK1", "sequence-type": "addgene-full", "addgene_id": "20564", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -344495,7 +365413,10 @@ "plasmid_name": "pLSL", "sequence-type": "depositor-full", "addgene_id": "51493", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attR1", @@ -344541,7 +365462,6 @@ "plasmid_name": "pMH-Halo tag", "sequence-type": "addgene-full", "addgene_id": "154144", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -344601,7 +365521,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-1", "sequence-type": "depositor-full", "addgene_id": "46710", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -344651,7 +365574,10 @@ "plasmid_name": "pDONR223_CYLC2_p.E152K", "sequence-type": "addgene-full", "addgene_id": "81388", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -344683,7 +365609,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0526-luc2", "sequence-type": "addgene-full", "addgene_id": "214656", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -344729,7 +365658,10 @@ "plasmid_name": "pDONR223_PIK3CB_WT", "sequence-type": "addgene-full", "addgene_id": "82221", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -344760,7 +365692,10 @@ "plasmid_name": "pLX311 DEDD", "sequence-type": "addgene-full", "addgene_id": "117745", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -344818,7 +365753,10 @@ "plasmid_name": "pENTR223-BKRF2", "sequence-type": "addgene-full", "addgene_id": "195773", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -344847,7 +365785,10 @@ "plasmid_name": "Flag-HA-YOD1", "sequence-type": "addgene-full", "addgene_id": "22554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -344892,7 +365833,10 @@ "plasmid_name": "p5E-3x125bp-mnx1", "sequence-type": "addgene-full", "addgene_id": "169043", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2020.05.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32516597" + ], "kit": null, "att_sites": [ "attL4", @@ -344923,7 +365867,10 @@ "plasmid_name": "pDONR221_SLC41A2", "sequence-type": "addgene-full", "addgene_id": "132154", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -344954,7 +365901,6 @@ "plasmid_name": "EEF1A2 - G70S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216586", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -344983,7 +365929,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(KTM)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128672", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -345033,7 +365982,10 @@ "plasmid_name": "pSYC-437", "sequence-type": "addgene-full", "addgene_id": "163829", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-15248-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32312952" + ], "kit": null, "file": "data/addgene_plasmids/163829.addgene-full.gb" }, @@ -345042,7 +365994,10 @@ "plasmid_name": "Ubi:Zebrabow", "sequence-type": "addgene-full", "addgene_id": "118219", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094631", + "https://www.ncbi.nlm.nih.gov/pubmed/23757414" + ], "kit": null, "att_sites": [ "attB1", @@ -345085,7 +366040,10 @@ "plasmid_name": "pLenti-PGK-RAP1A-E63-neo", "sequence-type": "addgene-full", "addgene_id": "156174", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -345145,7 +366103,10 @@ "plasmid_name": "pENTR-L3-Csy4-Cas9-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141045", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -345179,7 +366140,10 @@ "plasmid_name": "pLenti6.3-OGDH_wobble", "sequence-type": "addgene-full", "addgene_id": "110938", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1617922114", + "https://www.ncbi.nlm.nih.gov/pubmed/28396387" + ], "kit": null, "att_sites": [ "attB1", @@ -345239,7 +366203,10 @@ "plasmid_name": "pHAGE-PTPN11-T73I", "sequence-type": "addgene-full", "addgene_id": "116647", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -345293,7 +366260,10 @@ "plasmid_name": "pKH160_FLAG-APEX2-YIPF4 LIR mut", "sequence-type": "addgene-full", "addgene_id": "214979", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "att_sites": [ "attB1", @@ -345344,7 +366314,10 @@ "plasmid_name": "pDL1", "sequence-type": "addgene-full", "addgene_id": "175881", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -345375,7 +366348,10 @@ "plasmid_name": "pLenti-MTS-jAspSnFR3", "sequence-type": "addgene-full", "addgene_id": "203487", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "att_sites": [ "attB1", @@ -345438,7 +366414,10 @@ "plasmid_name": "pAG414GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14240", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -345496,7 +366475,9 @@ "plasmid_name": "pDONR207-MpTubulin beta 3", "sequence-type": "addgene-full", "addgene_id": "100594", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27703856" + ], "kit": null, "att_sites": [ "attL1", @@ -345520,7 +366501,10 @@ "plasmid_name": "pDONR223_RHOA_p.E40Q", "sequence-type": "addgene-full", "addgene_id": "81313", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -345553,7 +366537,6 @@ "plasmid_name": "pgLAP3", "sequence-type": "depositor-full", "addgene_id": "19704", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -345607,7 +366590,10 @@ "plasmid_name": "pDest-658 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161882", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -345671,7 +366657,6 @@ "plasmid_name": "V5-K40R-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "195408", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -345722,7 +366707,10 @@ "plasmid_name": "pLV-PLXNB2-mGAP", "sequence-type": "addgene-full", "addgene_id": "86241", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "att_sites": [ "attB1", @@ -345782,7 +366770,9 @@ "plasmid_name": "pMpGWB236", "sequence-type": "depositor-full", "addgene_id": "68627", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -345830,7 +366820,10 @@ "plasmid_name": "pME-mKate-P2A-APEX2-NS", "sequence-type": "depositor-full", "addgene_id": "67670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attL1", @@ -345865,7 +366858,10 @@ "plasmid_name": "pHAGE-NRF2-E79Q", "sequence-type": "addgene-full", "addgene_id": "207828", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -345918,7 +366914,10 @@ "plasmid_name": "pLCS106", "sequence-type": "addgene-full", "addgene_id": "209359", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -345958,7 +366957,10 @@ "plasmid_name": "pENTR-L1-ESYN-L4", "sequence-type": "depositor-full", "addgene_id": "32580", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL4" @@ -345988,7 +366990,10 @@ "plasmid_name": "R701-X08-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188)", "sequence-type": "addgene-full", "addgene_id": "159567", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -346036,7 +367041,10 @@ "plasmid_name": "pCR8 JARID2", "sequence-type": "addgene-full", "addgene_id": "114443", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "att_sites": [ "attL1", @@ -346066,7 +367074,10 @@ "plasmid_name": "pHAGE-SRSF2", "sequence-type": "addgene-full", "addgene_id": "116793", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116793.addgene-full.gb" }, @@ -346075,7 +367086,10 @@ "plasmid_name": "pDONR223-SRPK1", "sequence-type": "addgene-full", "addgene_id": "23582", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -346107,7 +367121,10 @@ "plasmid_name": "pENTR-THT III", "sequence-type": "depositor-full", "addgene_id": "55791", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "att_sites": [ "attL1", @@ -346141,7 +367158,10 @@ "plasmid_name": "pDONR221-Utp16", "sequence-type": "addgene-full", "addgene_id": "99985", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attL1", @@ -346172,7 +367192,6 @@ "plasmid_name": "pAG416GAL-3x-uC-HCoV-229E_3CL", "sequence-type": "addgene-full", "addgene_id": "201937", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -346219,7 +367238,10 @@ "plasmid_name": "pHAGE-PIK3CA-E453A", "sequence-type": "addgene-full", "addgene_id": "116473", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -346273,7 +367295,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 ORF3A", "sequence-type": "addgene-full", "addgene_id": "141271", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -346297,7 +367322,10 @@ "plasmid_name": "pME Integrin beta 1b", "sequence-type": "addgene-full", "addgene_id": "105976", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.22689", + "https://www.ncbi.nlm.nih.gov/pubmed/28372636" + ], "kit": null, "att_sites": [ "attL1", @@ -346328,7 +367356,10 @@ "plasmid_name": "R717-X61-566: His6-MBP-tev-Hs.RAF1(52-192)", "sequence-type": "addgene-full", "addgene_id": "159687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-21422-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33608534" + ], "kit": null, "att_sites": [ "attB1", @@ -346374,7 +367405,10 @@ "plasmid_name": "PB-CT3G-ERP2-MG", "sequence-type": "addgene-full", "addgene_id": "175501", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -346419,7 +367453,6 @@ "plasmid_name": "IDG_GABRP_OE_1", "sequence-type": "addgene-full", "addgene_id": "161679", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -346478,7 +367511,10 @@ "plasmid_name": "pME-Gal80", "sequence-type": "depositor-full", "addgene_id": "51620", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.22734", + "https://www.ncbi.nlm.nih.gov/pubmed/21905164" + ], "kit": null, "att_sites": [ "attL1", @@ -346510,7 +367546,10 @@ "plasmid_name": "pENTR D-TOPO-C3_17", "sequence-type": "depositor-full", "addgene_id": "60263", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -346541,7 +367580,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PIP5K1A_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214462", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -346607,7 +367645,10 @@ "plasmid_name": "pCAG/ATP10B-HA", "sequence-type": "addgene-full", "addgene_id": "209216", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -346652,7 +367693,6 @@ "plasmid_name": "pSMPUW_6.10_M3_Ef1a-HA-gateway-SV40", "sequence-type": "addgene-full", "addgene_id": "128446", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -346697,7 +367737,6 @@ "plasmid_name": "pENTR-L4R1-TREX", "sequence-type": "addgene-full", "addgene_id": "139527", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -346733,7 +367772,10 @@ "plasmid_name": "pDONR221_SLC28A1", "sequence-type": "addgene-full", "addgene_id": "132080", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -346764,7 +367806,10 @@ "plasmid_name": "pHAGE-XPO1-E571K", "sequence-type": "addgene-full", "addgene_id": "116708", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116708.addgene-full.gb" }, @@ -346773,7 +367818,6 @@ "plasmid_name": "pLEX307-CTSB-G418", "sequence-type": "addgene-full", "addgene_id": "158465", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -346833,7 +367877,9 @@ "plasmid_name": "pMpGWB404", "sequence-type": "depositor-full", "addgene_id": "68669", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attB2", @@ -346883,7 +367929,10 @@ "plasmid_name": "pDONR223_GABRA6_p.A322T", "sequence-type": "addgene-full", "addgene_id": "81605", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -346915,7 +367964,10 @@ "plasmid_name": "pDONR221-SLC25A45_STOP", "sequence-type": "addgene-full", "addgene_id": "161220", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -346946,7 +367998,10 @@ "plasmid_name": "LR (bact: HyPer)", "sequence-type": "addgene-full", "addgene_id": "162069", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb2818", + "https://www.ncbi.nlm.nih.gov/pubmed/23934216" + ], "kit": null, "att_sites": [ "attB1", @@ -346986,7 +368041,10 @@ "plasmid_name": "Tet-myr-CSK K222R-GFP", "sequence-type": "depositor-full", "addgene_id": "83471", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201501025", + "https://www.ncbi.nlm.nih.gov/pubmed/26216901" + ], "kit": null, "att_sites": [ "attB1", @@ -347058,7 +368116,10 @@ "plasmid_name": "pMXs-Hu-L-Myc", "sequence-type": "addgene-full", "addgene_id": "26022", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "att_sites": [ "attB1", @@ -347086,7 +368147,10 @@ "plasmid_name": "TFORF2955", "sequence-type": "addgene-full", "addgene_id": "144431", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -347146,7 +368210,10 @@ "plasmid_name": "actc1b-mKate2-EHD1b-dEH", "sequence-type": "addgene-full", "addgene_id": "109515", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -347188,7 +368255,10 @@ "plasmid_name": "DMPK", "sequence-type": "addgene-full", "addgene_id": "155550", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -347232,7 +368302,10 @@ "plasmid_name": "pDONR221_SLC17A4", "sequence-type": "addgene-full", "addgene_id": "131924", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -347263,7 +368336,6 @@ "plasmid_name": "plix403-V5-N-mCherry", "sequence-type": "addgene-full", "addgene_id": "223956", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -347327,7 +368399,6 @@ "plasmid_name": "R777-E187 Hs.PPP1CA", "sequence-type": "depositor-full", "addgene_id": "70471", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -347355,7 +368426,6 @@ "plasmid_name": "pLenti6.3/2K-NS4B", "sequence-type": "addgene-full", "addgene_id": "120845", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -347414,7 +368484,10 @@ "plasmid_name": "pBABEpuro-ARAF", "sequence-type": "depositor-full", "addgene_id": "51076", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI72763", + "https://www.ncbi.nlm.nih.gov/pubmed/24569458" + ], "kit": null, "att_sites": [ "attB1", @@ -347445,7 +368518,10 @@ "plasmid_name": "TFORF3389", "sequence-type": "addgene-full", "addgene_id": "144865", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -347505,7 +368581,10 @@ "plasmid_name": "pcDNA3_SP-HTR2A-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194367", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -347562,7 +368641,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO-miR-30 L5-L4", "sequence-type": "depositor-full", "addgene_id": "62126", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL4", @@ -347598,7 +368680,10 @@ "plasmid_name": "pGC193", "sequence-type": "depositor-full", "addgene_id": "19686", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attL3", @@ -347629,7 +368714,10 @@ "plasmid_name": "pHAGE-ERBB2-S974F", "sequence-type": "addgene-full", "addgene_id": "116351", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -347683,7 +368771,10 @@ "plasmid_name": "pDONR223_PTEN_p.M35I", "sequence-type": "addgene-full", "addgene_id": "82818", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -347712,7 +368803,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep78", "sequence-type": "addgene-full", "addgene_id": "136876", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -347757,7 +368851,10 @@ "plasmid_name": "pDONR223_STC2_WT", "sequence-type": "addgene-full", "addgene_id": "82883", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -347786,7 +368883,10 @@ "plasmid_name": "pDONR223_RIT1_p.R122L", "sequence-type": "addgene-full", "addgene_id": "82737", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -347818,7 +368918,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-EGFR NLS zeo", "sequence-type": "addgene-full", "addgene_id": "192337", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -347890,7 +368993,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 E 27nt-del", "sequence-type": "addgene-full", "addgene_id": "153954", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -347914,7 +369020,10 @@ "plasmid_name": "pLD-puro-Cc-PARK7V51G-VA", "sequence-type": "addgene-full", "addgene_id": "115183", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attB1", @@ -347976,7 +369085,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-5", "sequence-type": "depositor-full", "addgene_id": "46692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -348027,7 +369139,10 @@ "plasmid_name": "pDONR223-ZNF32", "sequence-type": "addgene-full", "addgene_id": "88309", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -348056,7 +369171,9 @@ "plasmid_name": "pMpGWB104", "sequence-type": "depositor-full", "addgene_id": "68558", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -348103,7 +369220,6 @@ "plasmid_name": "pDONR221_ANKRD46_3UTR", "sequence-type": "depositor-full", "addgene_id": "65861", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -348134,7 +369250,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP1_nostop", "sequence-type": "addgene-full", "addgene_id": "168518", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -348163,7 +369282,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK16_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158173", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -348229,7 +369347,10 @@ "plasmid_name": "pBi2FC-N-GW-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216144", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attR1", @@ -348284,7 +369405,10 @@ "plasmid_name": "pAG424GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14416", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -348346,7 +369470,10 @@ "plasmid_name": "pDONR223_STC2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82957", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -348375,7 +369502,10 @@ "plasmid_name": "JZ901: pMVP (L5-L4) EF1a promoter", "sequence-type": "addgene-full", "addgene_id": "121727", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -348408,7 +369538,10 @@ "plasmid_name": "pMuLE ENTR CMV Luc2 (FF-Luciferase) L5-L2", "sequence-type": "depositor-full", "addgene_id": "62168", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -348443,7 +369576,10 @@ "plasmid_name": "pDONR221-Neo", "sequence-type": "depositor-full", "addgene_id": "48993", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2180-9-90", + "https://www.ncbi.nlm.nih.gov/pubmed/19432966" + ], "kit": null, "file": "data/addgene_plasmids/48993.depositor-full.gb" }, @@ -348452,7 +369588,10 @@ "plasmid_name": "pHAGE-BRAF-H725Y", "sequence-type": "addgene-full", "addgene_id": "116165", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116165.addgene-full.gb" }, @@ -348461,7 +369600,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP16_nostop", "sequence-type": "addgene-full", "addgene_id": "168663", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -348490,7 +369632,10 @@ "plasmid_name": "CRKRS", "sequence-type": "addgene-full", "addgene_id": "155484", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -348533,7 +369678,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-POMK_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189893", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -348599,7 +369743,6 @@ "plasmid_name": "pWALIUM10-GW-TurboID-V5", "sequence-type": "addgene-full", "addgene_id": "196283", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -348656,7 +369799,10 @@ "plasmid_name": "pSLIK TT FLAG-HA RBFOX2", "sequence-type": "addgene-full", "addgene_id": "59769", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.235770.113", + "https://www.ncbi.nlm.nih.gov/pubmed/24637117" + ], "kit": null, "att_sites": [ "attB1", @@ -348723,7 +369869,10 @@ "plasmid_name": "p7130 pHAGE-P-CMVt-N-HA-GAW-KIF20A", "sequence-type": "addgene-full", "addgene_id": "100156", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -348775,7 +369924,10 @@ "plasmid_name": "pDONR223_CD3E_WT", "sequence-type": "addgene-full", "addgene_id": "81865", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -348807,7 +369959,10 @@ "plasmid_name": "KA701: pMVP (L3-L2) HA tag + pA; RIP::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121808", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -348846,7 +370001,6 @@ "plasmid_name": "Hs.KRAS4b E37G", "sequence-type": "depositor-full", "addgene_id": "83158", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -348872,7 +370026,10 @@ "plasmid_name": "pAG416GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14171", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -348934,7 +370091,10 @@ "plasmid_name": "pDONR223_CNBD1_p.S372N", "sequence-type": "addgene-full", "addgene_id": "81431", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -348966,7 +370126,10 @@ "plasmid_name": "pAC1807_pmax-dCasRx-FKBP", "sequence-type": "addgene-full", "addgene_id": "118640", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attB1", @@ -349001,7 +370164,10 @@ "plasmid_name": "pLentiCMV Puro DEST p38KTRmCerulean3", "sequence-type": "depositor-full", "addgene_id": "59155", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attB1", @@ -349066,7 +370232,10 @@ "plasmid_name": "TFORF3129", "sequence-type": "addgene-full", "addgene_id": "144605", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -349126,7 +370295,10 @@ "plasmid_name": "p3E-rab6ba", "sequence-type": "addgene-full", "addgene_id": "109721", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -349157,7 +370329,9 @@ "plasmid_name": "pDEST17-His10-ccdB-SNAP", "sequence-type": "addgene-full", "addgene_id": "166146", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attR1", @@ -349199,7 +370373,10 @@ "plasmid_name": "pHAGE-EGFR-P596S", "sequence-type": "addgene-full", "addgene_id": "116285", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -349253,7 +370430,10 @@ "plasmid_name": "pDONR221-kcnj9", "sequence-type": "addgene-full", "addgene_id": "173135", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -349284,7 +370464,10 @@ "plasmid_name": "pLVpuro-CMV-N-EGFP", "sequence-type": "addgene-full", "addgene_id": "122848", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attR1", @@ -349343,7 +370526,10 @@ "plasmid_name": "pDONR223_OR2M2_p.N42Y", "sequence-type": "addgene-full", "addgene_id": "81638", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -349375,7 +370561,10 @@ "plasmid_name": "OXSM_pLX307", "sequence-type": "addgene-full", "addgene_id": "98357", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -349436,7 +370625,6 @@ "plasmid_name": "pET32a-DEST", "sequence-type": "depositor-full", "addgene_id": "84652", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -349484,7 +370672,10 @@ "plasmid_name": "pFRT/TO/FLAG/HA-DEST TNRC6C", "sequence-type": "depositor-full", "addgene_id": "19885", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -349530,7 +370721,10 @@ "plasmid_name": "pSLIK-IDH1-R132H-FLAG", "sequence-type": "addgene-full", "addgene_id": "66803", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + ], "kit": null, "att_sites": [ "attB1", @@ -349596,7 +370790,6 @@ "plasmid_name": "pDEST-Spe4-RfA-mNeonGreen-stop", "sequence-type": "addgene-full", "addgene_id": "186392", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -349642,7 +370835,10 @@ "plasmid_name": "TFORF3382", "sequence-type": "addgene-full", "addgene_id": "144858", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -349702,7 +370898,9 @@ "plasmid_name": "pMpGWB313", "sequence-type": "depositor-full", "addgene_id": "68641", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -349748,7 +370946,10 @@ "plasmid_name": "pME-EGFP-NS", "sequence-type": "depositor-full", "addgene_id": "75341", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": null, "att_sites": [ "attL1", @@ -349784,7 +370985,10 @@ "plasmid_name": "pDONR221_SLC10A2", "sequence-type": "addgene-full", "addgene_id": "131919", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -349815,7 +371019,10 @@ "plasmid_name": "pGMCK-P38-luxAB-DAS+4", "sequence-type": "depositor-full", "addgene_id": "27376", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkp015", + "https://www.ncbi.nlm.nih.gov/pubmed/19174563" + ], "kit": null, "att_sites": [ "attB1", @@ -349850,7 +371057,6 @@ "plasmid_name": "R777-E311 Hs.SHC3", "sequence-type": "depositor-full", "addgene_id": "70595", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -349878,7 +371084,10 @@ "plasmid_name": "pAG425GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14226", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -349940,7 +371149,10 @@ "plasmid_name": "pDONR223_KEAP1_p.E117K", "sequence-type": "addgene-full", "addgene_id": "82791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -349969,7 +371181,10 @@ "plasmid_name": "pDONR223_BRAF_p.H574Q", "sequence-type": "addgene-full", "addgene_id": "82825", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -349999,7 +371214,10 @@ "plasmid_name": "TFORF3515", "sequence-type": "depositor-full", "addgene_id": "144991", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -350059,7 +371277,10 @@ "plasmid_name": "pDONR223_SV2C_p.R121Q", "sequence-type": "addgene-full", "addgene_id": "81543", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -350091,7 +371312,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_HindIII", "sequence-type": "depositor-full", "addgene_id": "65662", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -350136,7 +371360,10 @@ "plasmid_name": "actc1b-mKate2-rab6ba", "sequence-type": "addgene-full", "addgene_id": "109653", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -350178,7 +371405,10 @@ "plasmid_name": "pMSCV-SMYD2", "sequence-type": "addgene-full", "addgene_id": "85658", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.275529.115", + "https://www.ncbi.nlm.nih.gov/pubmed/26988419" + ], "kit": null, "att_sites": [ "attB1", @@ -350221,7 +371451,10 @@ "plasmid_name": "TFORF3301", "sequence-type": "addgene-full", "addgene_id": "144777", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -350281,7 +371514,10 @@ "plasmid_name": "pDONR221_SLC25A4", "sequence-type": "addgene-full", "addgene_id": "131982", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -350312,7 +371548,10 @@ "plasmid_name": "pMH-HA/Joseph2-Multitagged Plasmid", "sequence-type": "addgene-full", "addgene_id": "226726", - "references": [], + "references": [ + "https://doi.org/10.1080/07366205.2024.2343609", + "https://www.ncbi.nlm.nih.gov/pubmed/39185782" + ], "kit": null, "att_sites": [ "attB1", @@ -350364,7 +371603,10 @@ "plasmid_name": "TFORF3021", "sequence-type": "addgene-full", "addgene_id": "144497", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -350424,7 +371666,10 @@ "plasmid_name": "5'-3xFLAG Gse1-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212056", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -350465,7 +371710,10 @@ "plasmid_name": "pDONR223_PSG2_WT", "sequence-type": "addgene-full", "addgene_id": "81917", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -350497,7 +371745,10 @@ "plasmid_name": "pDONR221-SLC35G4_STOP", "sequence-type": "addgene-full", "addgene_id": "161286", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -350528,7 +371779,10 @@ "plasmid_name": "pCAG-HA-Sox2-IP", "sequence-type": "addgene-full", "addgene_id": "13459", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M501423200", + "https://www.ncbi.nlm.nih.gov/pubmed/15863505" + ], "kit": null, "att_sites": [ "attB1", @@ -350572,7 +371826,10 @@ "plasmid_name": "TFORF3441", "sequence-type": "addgene-full", "addgene_id": "144917", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -350632,7 +371889,10 @@ "plasmid_name": "pDONR223_POT1_p.G76V", "sequence-type": "addgene-full", "addgene_id": "81497", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -350664,7 +371924,10 @@ "plasmid_name": "MAC3-CDK8", "sequence-type": "addgene-full", "addgene_id": "222609", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "att_sites": [ "attB1", @@ -350708,7 +371971,10 @@ "plasmid_name": "pYPQ141-ZmUBI-RZ-Cas12j2", "sequence-type": "addgene-full", "addgene_id": "189781", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2022.100453", + "https://www.ncbi.nlm.nih.gov/pubmed/36127876" + ], "kit": null, "att_sites": [ "attL2", @@ -350738,7 +372004,10 @@ "plasmid_name": "pDONR221-SLC8A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161352", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -350769,7 +372038,9 @@ "plasmid_name": "pME-lox-3xNLS-mCherry-V5-SV40pA-3xstop-lox (JDW 1232)", "sequence-type": "addgene-full", "addgene_id": "224522", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -350813,7 +372084,10 @@ "plasmid_name": "pLenti PGK Neo DEST (w531-1)", "sequence-type": "addgene-full", "addgene_id": "19067", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -350878,7 +372152,10 @@ "plasmid_name": "pMMK ENTR 2", "sequence-type": "addgene-full", "addgene_id": "206261", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL3", @@ -350899,7 +372176,10 @@ "plasmid_name": "pDONR223_HRAS_WT", "sequence-type": "addgene-full", "addgene_id": "81777", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -350931,7 +372211,10 @@ "plasmid_name": "TFORF3067", "sequence-type": "addgene-full", "addgene_id": "144543", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144543.addgene-full.gb" }, @@ -350940,7 +372223,10 @@ "plasmid_name": "pAG416GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14268", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -350999,7 +372285,10 @@ "plasmid_name": "pEntry_HCoV-229E-Spike", "sequence-type": "addgene-full", "addgene_id": "168971", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -351028,7 +372317,9 @@ "plasmid_name": "pDONR221-PSMA3", "sequence-type": "addgene-full", "addgene_id": "166200", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -351059,7 +372350,10 @@ "plasmid_name": "pDONOR223 RpH-LAMP1-3xFLAG", "sequence-type": "addgene-full", "addgene_id": "163019", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2020.1771858", + "https://www.ncbi.nlm.nih.gov/pubmed/32515674" + ], "kit": null, "att_sites": [ "attL1", @@ -351096,7 +372390,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-lsy-6", "sequence-type": "depositor-full", "addgene_id": "46738", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -351137,7 +372434,10 @@ "plasmid_name": "pHAGE-BRAF-G563D", "sequence-type": "addgene-full", "addgene_id": "116158", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -351192,7 +372492,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L5L4", "sequence-type": "depositor-full", "addgene_id": "113741", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -351226,7 +372529,10 @@ "plasmid_name": "pDONR223_MFAP4_WT", "sequence-type": "addgene-full", "addgene_id": "81858", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -351258,7 +372564,10 @@ "plasmid_name": "pHDT1:HDT1-GFP", "sequence-type": "addgene-full", "addgene_id": "108565", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "att_sites": [ "attB1", @@ -351301,7 +372610,9 @@ "plasmid_name": "pPB-cT3G-cERP2-TET1", "sequence-type": "addgene-full", "addgene_id": "222572", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -351347,7 +372658,10 @@ "plasmid_name": "KZ401: pMVP (L3-L2) P2A-Neo + polyA", "sequence-type": "addgene-full", "addgene_id": "121781", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -351384,7 +372698,10 @@ "plasmid_name": "KJ901: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS", "sequence-type": "addgene-full", "addgene_id": "121835", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -351418,7 +372735,9 @@ "plasmid_name": "pPB-cT3G-cERP2-ZGLP1", "sequence-type": "addgene-full", "addgene_id": "222926", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "att_sites": [ "attB1", @@ -351464,7 +372783,10 @@ "plasmid_name": "TFORF3162", "sequence-type": "addgene-full", "addgene_id": "144638", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -351524,7 +372846,6 @@ "plasmid_name": "R777-E091 Hs.FLT3", "sequence-type": "depositor-full", "addgene_id": "70375", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -351552,7 +372873,10 @@ "plasmid_name": "pHAGE-PIK3CA-G106_R108delGNR", "sequence-type": "addgene-full", "addgene_id": "116492", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -351606,7 +372930,6 @@ "plasmid_name": "p667-UBC-PKMYT1-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135248", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -351672,7 +372995,10 @@ "plasmid_name": "pSGE_722_S2-1_CGCG-to-HEY", "sequence-type": "depositor-full", "addgene_id": "71177", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -351705,7 +373031,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S32", "sequence-type": "addgene-full", "addgene_id": "140309", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -351757,7 +373086,10 @@ "plasmid_name": "pGWB502", "sequence-type": "depositor-full", "addgene_id": "74844", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -351804,7 +373136,10 @@ "plasmid_name": "459 p3E-2A-nlsEGFPpA", "sequence-type": "addgene-full", "addgene_id": "195969", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL3", @@ -351843,7 +373178,10 @@ "plasmid_name": "pGC267", "sequence-type": "depositor-full", "addgene_id": "19618", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -351877,7 +373215,10 @@ "plasmid_name": "pLenti-Tet-MKK6(DD)-Puro", "sequence-type": "addgene-full", "addgene_id": "86094", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.197152", + "https://www.ncbi.nlm.nih.gov/pubmed/28446540" + ], "kit": null, "att_sites": [ "attB1", @@ -351939,7 +373280,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL1 WT", "sequence-type": "addgene-full", "addgene_id": "123100", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -351983,7 +373327,10 @@ "plasmid_name": "pDONR221_SLC35G1", "sequence-type": "addgene-full", "addgene_id": "132061", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -352014,7 +373361,10 @@ "plasmid_name": "pZA6", "sequence-type": "addgene-full", "addgene_id": "158484", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -352044,7 +373394,6 @@ "plasmid_name": "pCSDest-ENTR-MCP-ADAR2-DD(E488Q/T490A)-V5", "sequence-type": "addgene-full", "addgene_id": "192714", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -352086,7 +373435,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST RBM14-V5", "sequence-type": "depositor-full", "addgene_id": "69823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "att_sites": [ "attB1", @@ -352135,7 +373487,10 @@ "plasmid_name": "pDONR221-MFSD14B_STOP", "sequence-type": "depositor-full", "addgene_id": "161047", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -352166,7 +373521,6 @@ "plasmid_name": "R777-E328 Hs.SPRY1-nostop", "sequence-type": "depositor-full", "addgene_id": "70612", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -352194,7 +373548,6 @@ "plasmid_name": "IDG_CACNG8_OE_1", "sequence-type": "addgene-full", "addgene_id": "161698", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -352253,7 +373606,6 @@ "plasmid_name": "Hs.HRAS Q61R", "sequence-type": "depositor-full", "addgene_id": "83188", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -352279,7 +373631,10 @@ "plasmid_name": "pHAGE-IDH1-P33S", "sequence-type": "addgene-full", "addgene_id": "116409", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -352334,7 +373689,10 @@ "plasmid_name": "pTol1:uas-myc-act-map2k2b-2a-tdTomato", "sequence-type": "addgene-full", "addgene_id": "104721", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "att_sites": [ "attB1", @@ -352383,7 +373741,10 @@ "plasmid_name": "pENTR223-BBRF2", "sequence-type": "addgene-full", "addgene_id": "195792", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -352412,7 +373773,10 @@ "plasmid_name": "YFN43", "sequence-type": "addgene-full", "addgene_id": "89487", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0046907", + "https://www.ncbi.nlm.nih.gov/pubmed/23056524" + ], "kit": null, "att_sites": [ "attR1", @@ -352462,7 +373826,10 @@ "plasmid_name": "C514-E09: attB5r-RU5u-FLAG-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162951", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -352492,7 +373859,10 @@ "plasmid_name": "pENTR223-BBRF1", "sequence-type": "addgene-full", "addgene_id": "195826", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -352521,7 +373891,10 @@ "plasmid_name": "pDEST40-CES2A-\u0394C", "sequence-type": "addgene-full", "addgene_id": "200554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2023.04.011", + "https://www.ncbi.nlm.nih.gov/pubmed/37141889" + ], "kit": null, "att_sites": [ "attB1", @@ -352573,7 +373946,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-G418", "sequence-type": "addgene-full", "addgene_id": "158550", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -352637,7 +374009,10 @@ "plasmid_name": "pQCXIN X2 DEST (w310-1)", "sequence-type": "depositor-full", "addgene_id": "17399", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -352684,7 +374059,10 @@ "plasmid_name": "pCM1.153", "sequence-type": "depositor-full", "addgene_id": "21387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -352715,7 +374093,10 @@ "plasmid_name": "pWZL Neo Myr Flag PKM2", "sequence-type": "addgene-full", "addgene_id": "20585", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -352756,7 +374137,10 @@ "plasmid_name": "pDONR221-NIPA2", "sequence-type": "addgene-full", "addgene_id": "132255", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -352787,7 +374171,10 @@ "plasmid_name": "pAG414GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14312", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -352848,7 +374235,10 @@ "plasmid_name": "S100B_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176952", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -352901,7 +374291,10 @@ "plasmid_name": "pLenti6-CENP-A-mCherry", "sequence-type": "addgene-full", "addgene_id": "89767", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.194662", + "https://www.ncbi.nlm.nih.gov/pubmed/28232523" + ], "kit": null, "att_sites": [ "attB1", @@ -352963,7 +374356,10 @@ "plasmid_name": "pDONR223_MFAP4_p.Y55S", "sequence-type": "addgene-full", "addgene_id": "81369", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -352995,7 +374391,6 @@ "plasmid_name": "g13s pDONR", "sequence-type": "addgene-full", "addgene_id": "117444", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -353026,7 +374421,10 @@ "plasmid_name": "pLgw EcoDam-V5-ELK4", "sequence-type": "addgene-full", "addgene_id": "98606", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attB1", @@ -353079,7 +374477,10 @@ "plasmid_name": "pENTR1A-NTAP-B (w323-1)", "sequence-type": "depositor-full", "addgene_id": "17403", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -353107,7 +374508,6 @@ "plasmid_name": "pAG416GAL10-HRV-B14_3C", "sequence-type": "addgene-full", "addgene_id": "203466", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -353156,7 +374556,10 @@ "plasmid_name": "pCFJ1360 - Intron GG3 - smu-1", "sequence-type": "addgene-full", "addgene_id": "159806", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -353194,7 +374597,10 @@ "plasmid_name": "pBABEpuro-ERBB2 S310F", "sequence-type": "addgene-full", "addgene_id": "40991", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1203201109", + "https://www.ncbi.nlm.nih.gov/pubmed/22908275" + ], "kit": null, "att_sites": [ "attB1", @@ -353226,7 +374632,6 @@ "plasmid_name": "pFRT-TODestFLAGHA_HuC", "sequence-type": "depositor-full", "addgene_id": "65756", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -353271,7 +374676,10 @@ "plasmid_name": "pHAGE-PIK3CA-V344A", "sequence-type": "addgene-full", "addgene_id": "116546", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -353325,7 +374733,10 @@ "plasmid_name": "pME-BASU-NS", "sequence-type": "addgene-full", "addgene_id": "166565", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "att_sites": [ "attL1", @@ -353358,7 +374769,9 @@ "plasmid_name": "pcDNA5-3xFLAG-EGFP", "sequence-type": "addgene-full", "addgene_id": "209058", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attB1", @@ -353417,7 +374830,10 @@ "plasmid_name": "pDEST15-Eps8L2_544-715", "sequence-type": "addgene-full", "addgene_id": "196540", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attB1", @@ -353451,7 +374867,9 @@ "plasmid_name": "pMpGWB134", "sequence-type": "depositor-full", "addgene_id": "68588", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -353497,7 +374915,10 @@ "plasmid_name": "pDONR221-NIPAL4_STOP", "sequence-type": "addgene-full", "addgene_id": "161437", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -353528,7 +374949,10 @@ "plasmid_name": "pDONR_P2R-P3_R2-Turbo-mVenus-STOP-L3", "sequence-type": "addgene-full", "addgene_id": "127354", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL3", @@ -353564,7 +374988,10 @@ "plasmid_name": "pSC13", "sequence-type": "addgene-full", "addgene_id": "104787", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -353607,7 +375034,6 @@ "plasmid_name": "pENTR-L5L2-mCherry-stop", "sequence-type": "addgene-full", "addgene_id": "139560", - "references": [], "kit": null, "att_sites": [ "attL2", @@ -353641,7 +375067,10 @@ "plasmid_name": "pCAG/ATP11C(E184Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209251", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209251.addgene-full.gb" }, @@ -353650,7 +375079,6 @@ "plasmid_name": "R777-E007 Hs.ALK", "sequence-type": "depositor-full", "addgene_id": "70291", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -353677,7 +375105,10 @@ "plasmid_name": "HJP-196-IVS-Syn21-NrdJ-1C-CreC-WPREUw", "sequence-type": "addgene-full", "addgene_id": "162477", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "att_sites": [ "attR1", @@ -353713,7 +375144,6 @@ "plasmid_name": "pHAGE-CMV-Flag-GFP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135275", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -353770,7 +375200,10 @@ "plasmid_name": "pYPQ291-E827A", "sequence-type": "addgene-full", "addgene_id": "129678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -353802,7 +375235,10 @@ "plasmid_name": "pENTR-L1-CAMKII(0.4)-R5", "sequence-type": "depositor-full", "addgene_id": "32578", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL1", @@ -353833,7 +375269,10 @@ "plasmid_name": "pRP(Exp)-CMV> ORF_924bp (Azgp1):T2A:dTomato:IRES:Puro", "sequence-type": "addgene-full", "addgene_id": "110830", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.201701465RR", + "https://www.ncbi.nlm.nih.gov/pubmed/29570397" + ], "kit": null, "att_sites": [ "attB1", @@ -353882,7 +375321,6 @@ "plasmid_name": "pTwist-ENTR-rbm11-202", "sequence-type": "addgene-full", "addgene_id": "192729", - "references": [], "kit": null, "file": "data/addgene_plasmids/192729.addgene-full.gb" }, @@ -353891,7 +375329,6 @@ "plasmid_name": "pLENTI_TetOn_Hu_MAD2(WT)", "sequence-type": "addgene-full", "addgene_id": "136347", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -353950,7 +375387,10 @@ "plasmid_name": "MAC_N_FBRL", "sequence-type": "addgene-full", "addgene_id": "111686", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -353996,7 +375436,10 @@ "plasmid_name": "pDL107", "sequence-type": "addgene-full", "addgene_id": "175912", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -354020,7 +375463,10 @@ "plasmid_name": "pEZYshuttle", "sequence-type": "depositor-full", "addgene_id": "18703", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "att_sites": [ "attR1", @@ -354057,7 +375503,10 @@ "plasmid_name": "pDONR223_B2M_p.M1R", "sequence-type": "addgene-full", "addgene_id": "81280", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -354089,7 +375538,6 @@ "plasmid_name": "pAG416GAL-3x-uC-ccdB-6stop", "sequence-type": "addgene-full", "addgene_id": "203514", - "references": [], "kit": null, "att_sites": [ "attR1" @@ -354141,7 +375589,10 @@ "plasmid_name": "pLEX307 hDVL1", "sequence-type": "addgene-full", "addgene_id": "102863", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "att_sites": [ "attB1", @@ -354198,7 +375649,10 @@ "plasmid_name": "MAC-CTSL", "sequence-type": "addgene-full", "addgene_id": "172414", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -354243,7 +375697,10 @@ "plasmid_name": "Flag-HA-USP50", "sequence-type": "addgene-full", "addgene_id": "22588", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -354288,7 +375745,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 Y635A", "sequence-type": "addgene-full", "addgene_id": "175772", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -354341,7 +375801,10 @@ "plasmid_name": "pcDNA5FRT/TO-VCPIP1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113482", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -354385,7 +375848,10 @@ "plasmid_name": "pYPQ167", "sequence-type": "depositor-full", "addgene_id": "69309", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL1", @@ -354419,7 +375885,10 @@ "plasmid_name": "GFP-BAZ1B", "sequence-type": "addgene-full", "addgene_id": "65372", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -354471,7 +375940,10 @@ "plasmid_name": "pHAGE-PIK3R1-N564D", "sequence-type": "addgene-full", "addgene_id": "116600", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -354522,7 +375994,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-WWC1", "sequence-type": "addgene-full", "addgene_id": "172994", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -354567,7 +376042,10 @@ "plasmid_name": "pDONR221_SLCO1B1", "sequence-type": "addgene-full", "addgene_id": "132188", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -354598,7 +376076,10 @@ "plasmid_name": "MNEAP1exp", "sequence-type": "addgene-full", "addgene_id": "131021", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "att_sites": [ "attB1", @@ -354634,7 +376115,10 @@ "plasmid_name": "pDONR221-SFXN3", "sequence-type": "addgene-full", "addgene_id": "132268", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -354665,7 +376149,9 @@ "plasmid_name": "pMpGWB426", "sequence-type": "depositor-full", "addgene_id": "68691", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68691.depositor-full.gb" }, @@ -354674,7 +376160,10 @@ "plasmid_name": "MAC_C_CSF1R", "sequence-type": "addgene-full", "addgene_id": "187767", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -354719,7 +376208,10 @@ "plasmid_name": "pDONR223_PSG2_p.H245Y", "sequence-type": "addgene-full", "addgene_id": "81354", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -354751,7 +376243,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK32C_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170610", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -354817,7 +376308,6 @@ "plasmid_name": "R777-E261 Hs.RASSF5", "sequence-type": "depositor-full", "addgene_id": "70545", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -354845,7 +376335,10 @@ "plasmid_name": "pSGE_711_OSC-fkh_dCP", "sequence-type": "depositor-full", "addgene_id": "71220", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -354878,7 +376371,10 @@ "plasmid_name": "BirA-Myc_N_PAX6", "sequence-type": "addgene-full", "addgene_id": "167721", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -354922,7 +376418,10 @@ "plasmid_name": "pDONR223_BRAF_p.V600E", "sequence-type": "addgene-full", "addgene_id": "82186", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -354951,7 +376450,6 @@ "plasmid_name": "Phage-PGK-FLAG-HA-T(WT)", "sequence-type": "addgene-full", "addgene_id": "181737", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -355001,7 +376499,10 @@ "plasmid_name": "pDONR221 Spb1", "sequence-type": "depositor-full", "addgene_id": "63777", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -355032,7 +376533,10 @@ "plasmid_name": "pDONR223-ZNF280C", "sequence-type": "addgene-full", "addgene_id": "88658", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -355062,7 +376566,6 @@ "plasmid_name": "CTNNB1 - T551M in pENTR", "sequence-type": "addgene-full", "addgene_id": "216621", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -355092,7 +376595,10 @@ "plasmid_name": "pENTR-QK1", "sequence-type": "addgene-full", "addgene_id": "16183", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.03.032", + "https://www.ncbi.nlm.nih.gov/pubmed/16713569" + ], "kit": null, "att_sites": [ "attL1", @@ -355121,7 +376627,10 @@ "plasmid_name": "pDONR221_SLC30A2", "sequence-type": "addgene-full", "addgene_id": "132113", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -355152,7 +376661,10 @@ "plasmid_name": "pDONR223 LC3B WT", "sequence-type": "addgene-full", "addgene_id": "123072", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -355182,7 +376694,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-miniTurbo-NES-YFP", "sequence-type": "addgene-full", "addgene_id": "127369", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attB1", @@ -355230,7 +376745,10 @@ "plasmid_name": "pcDNA3_ERBB3-NTEV-tcs-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "214611", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -355287,7 +376805,6 @@ "plasmid_name": "pCM3.10", "sequence-type": "depositor-full", "addgene_id": "19604", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -355310,7 +376827,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS-Gln93,Ala271", "sequence-type": "addgene-full", "addgene_id": "158632", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attL1", @@ -355339,7 +376859,6 @@ "plasmid_name": "BRAF in pENTR", "sequence-type": "addgene-full", "addgene_id": "216605", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -355369,7 +376888,10 @@ "plasmid_name": "pWZL Neo Myr Flag ITK", "sequence-type": "addgene-full", "addgene_id": "20507", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -355410,7 +376932,10 @@ "plasmid_name": "pGWB516", "sequence-type": "depositor-full", "addgene_id": "74858", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -355456,7 +376981,10 @@ "plasmid_name": "E2_pENTR_R4R3_T CTP", "sequence-type": "addgene-full", "addgene_id": "171736", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attR3", @@ -355488,7 +377016,10 @@ "plasmid_name": "pAG416GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14340", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -355549,7 +377080,10 @@ "plasmid_name": "pME_GGWDest-", "sequence-type": "depositor-full", "addgene_id": "49320", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -355594,7 +377128,6 @@ "plasmid_name": "pAG426-GAL-TAF15", "sequence-type": "addgene-full", "addgene_id": "181713", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -355648,7 +377181,10 @@ "plasmid_name": "pKH162_FLAG-APEX2-YIPF3 LIR mut", "sequence-type": "addgene-full", "addgene_id": "214981", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "att_sites": [ "attB1", @@ -355699,7 +377235,10 @@ "plasmid_name": "pFRT/TO/RFP-DDX54", "sequence-type": "depositor-full", "addgene_id": "97061", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.218438.116", + "https://www.ncbi.nlm.nih.gov/pubmed/28596291" + ], "kit": null, "att_sites": [ "attB1", @@ -355744,7 +377283,10 @@ "plasmid_name": "pLX307 MCL1", "sequence-type": "addgene-full", "addgene_id": "117726", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -355804,7 +377346,6 @@ "plasmid_name": "R777-E085 Hs.FGFR2", "sequence-type": "depositor-full", "addgene_id": "70369", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -355833,7 +377374,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0482-luc2", "sequence-type": "addgene-full", "addgene_id": "214635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -355877,7 +377421,10 @@ "plasmid_name": "pDONR223_IKBKG_WT", "sequence-type": "addgene-full", "addgene_id": "82242", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -355906,7 +377453,10 @@ "plasmid_name": "pINDUCER-21-LCOR", "sequence-type": "addgene-full", "addgene_id": "97038", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "att_sites": [ "attB1", @@ -355962,7 +377512,10 @@ "plasmid_name": "pDONR221_SLC30A1", "sequence-type": "addgene-full", "addgene_id": "132137", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132137.addgene-full.gb" }, @@ -355971,7 +377524,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-Puro", "sequence-type": "addgene-full", "addgene_id": "158549", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -356034,7 +377586,10 @@ "plasmid_name": "pHAGE-PTEN-L247_P248delLP", "sequence-type": "addgene-full", "addgene_id": "116624", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -356088,7 +377643,10 @@ "plasmid_name": "pUC-DEST-hSOX2-EGFP-PuroTK", "sequence-type": "addgene-full", "addgene_id": "141026", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attB1", @@ -356140,7 +377698,10 @@ "plasmid_name": "pAM-PAT-ProCDKA;1::CDKA;1:YFP", "sequence-type": "depositor-full", "addgene_id": "80685", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05770", + "https://www.ncbi.nlm.nih.gov/pubmed/17468744" + ], "kit": null, "att_sites": [ "attB1", @@ -356171,7 +377732,10 @@ "plasmid_name": "C513-E06: attB5r-pA-polyhedrinp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162948", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -356183,7 +377747,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-LGALS3", "sequence-type": "addgene-full", "addgene_id": "175756", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -356234,7 +377801,10 @@ "plasmid_name": "pDONR223_HAUS1_p.A102V", "sequence-type": "addgene-full", "addgene_id": "81370", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -356266,7 +377836,10 @@ "plasmid_name": "MAC_N_LHX8", "sequence-type": "addgene-full", "addgene_id": "187743", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -356311,7 +377884,10 @@ "plasmid_name": "pDONR223_MAP2K1_WT", "sequence-type": "addgene-full", "addgene_id": "82139", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -356340,7 +377916,10 @@ "plasmid_name": "pCFJ2345 - Intron GG2 - 250bp no PATC", "sequence-type": "addgene-full", "addgene_id": "159884", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -356371,7 +377950,10 @@ "plasmid_name": "pMLS260", "sequence-type": "depositor-full", "addgene_id": "73685", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.184275", + "https://www.ncbi.nlm.nih.gov/pubmed/26837755" + ], "kit": null, "att_sites": [ "attB1", @@ -356406,7 +377988,10 @@ "plasmid_name": "pENTR-R4R3-mEGFP-N", "sequence-type": "addgene-full", "addgene_id": "113746", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -356444,7 +378029,10 @@ "plasmid_name": "pUASt-FMW-attB-AthHen1", "sequence-type": "addgene-full", "addgene_id": "104958", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4610", + "https://www.ncbi.nlm.nih.gov/pubmed/29481550" + ], "kit": null, "file": "data/addgene_plasmids/104958.addgene-full.gb" }, @@ -356453,7 +378041,10 @@ "plasmid_name": "pGWB422", "sequence-type": "depositor-full", "addgene_id": "74816", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -356503,7 +378094,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term FBL", "sequence-type": "addgene-full", "addgene_id": "187577", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -356548,7 +378142,6 @@ "plasmid_name": "EFR WT", "sequence-type": "addgene-full", "addgene_id": "102413", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -356588,7 +378181,10 @@ "plasmid_name": "pHAGE-USP32__EPHA1", "sequence-type": "addgene-full", "addgene_id": "116844", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -356639,7 +378235,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16-18 E7 Chimera C", "sequence-type": "addgene-full", "addgene_id": "191544", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "att_sites": [ "attB1", @@ -356685,7 +378284,10 @@ "plasmid_name": "TurboID-mNeongreen-3xFLAG fusion pos3", "sequence-type": "addgene-full", "addgene_id": "172864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2021.101094", + "https://www.ncbi.nlm.nih.gov/pubmed/34416233" + ], "kit": null, "att_sites": [ "attL3", @@ -356718,7 +378320,10 @@ "plasmid_name": "pDONR221_SLC2A6", "sequence-type": "addgene-full", "addgene_id": "132078", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -356749,7 +378354,10 @@ "plasmid_name": "pDEST-CMV GFP-GABARAPL1 G116", "sequence-type": "addgene-full", "addgene_id": "123119", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -356802,7 +378410,10 @@ "plasmid_name": "mTALEAD 16S rRNA-1131T8C", "sequence-type": "addgene-full", "addgene_id": "210835", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "att_sites": [ "attB1", @@ -356841,7 +378452,6 @@ "plasmid_name": "R777-E043 Hs.DUSP6", "sequence-type": "depositor-full", "addgene_id": "70327", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -356869,7 +378479,10 @@ "plasmid_name": "pHAGE-IDH1-R132C", "sequence-type": "addgene-full", "addgene_id": "116410", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -356924,7 +378537,10 @@ "plasmid_name": "pDEST myc MOV10 D645N", "sequence-type": "depositor-full", "addgene_id": "51720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.03.017", + "https://www.ncbi.nlm.nih.gov/pubmed/24726324" + ], "kit": null, "att_sites": [ "attB1", @@ -356973,7 +378589,10 @@ "plasmid_name": "pLenti-Zyxin-E (aa1-138)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187697", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187697.addgene-full.gb" }, @@ -356982,7 +378601,6 @@ "plasmid_name": "IDG_KCNS1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161681", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -357041,7 +378659,6 @@ "plasmid_name": "R777-E356 Hs.TSC2-nostop", "sequence-type": "depositor-full", "addgene_id": "70640", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -357068,7 +378685,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S32-KD", "sequence-type": "addgene-full", "addgene_id": "140310", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -357120,7 +378740,6 @@ "plasmid_name": "p667-UBC-TLK2-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135251", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -357187,7 +378806,10 @@ "plasmid_name": "PB-Neo-TetO-Cdk12_Nterm_FlagHa", "sequence-type": "addgene-full", "addgene_id": "127179", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0758-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30487607" + ], "kit": null, "att_sites": [ "attB1", @@ -357247,7 +378869,9 @@ "plasmid_name": "pMpGWB203", "sequence-type": "depositor-full", "addgene_id": "68594", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -357294,7 +378918,10 @@ "plasmid_name": "pDONR221-NPC1L1", "sequence-type": "addgene-full", "addgene_id": "132303", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -357326,7 +378953,6 @@ "plasmid_name": "pENTR-R2L3-pA-PGKpacDeltaTK-pA1", "sequence-type": "addgene-full", "addgene_id": "139544", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -357364,7 +378990,10 @@ "plasmid_name": "EHD2-mEGFP", "sequence-type": "depositor-full", "addgene_id": "45932", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2012.98", + "https://www.ncbi.nlm.nih.gov/pubmed/22505029" + ], "kit": null, "att_sites": [ "attB1", @@ -357405,7 +379034,9 @@ "plasmid_name": "pDestTol2-QUAS:GFP", "sequence-type": "addgene-full", "addgene_id": "184811", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "att_sites": [ "attB1", @@ -357447,7 +379078,10 @@ "plasmid_name": "460 p3E-2A-mCherrypA", "sequence-type": "addgene-full", "addgene_id": "195970", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL3", @@ -357485,7 +379119,6 @@ "plasmid_name": "pAG416GAL-EYFP", "sequence-type": "addgene-full", "addgene_id": "201792", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -357542,7 +379175,10 @@ "plasmid_name": "ph2p", "sequence-type": "depositor-full", "addgene_id": "22520", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "att_sites": [ "attB1", @@ -357576,7 +379212,10 @@ "plasmid_name": "p5E-kdrl", "sequence-type": "depositor-full", "addgene_id": "78687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2007.01.023", + "https://www.ncbi.nlm.nih.gov/pubmed/17306248" + ], "kit": null, "att_sites": [ "attL4", @@ -357611,7 +379250,10 @@ "plasmid_name": "pHAGE-PIK3CD-A396T", "sequence-type": "addgene-full", "addgene_id": "116562", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -357665,7 +379307,10 @@ "plasmid_name": "pDONR223_LIG1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83006", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -357694,7 +379339,10 @@ "plasmid_name": "tetO-ID1", "sequence-type": "addgene-full", "addgene_id": "170692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -357756,7 +379404,10 @@ "plasmid_name": "pSEM237 - pEXP[Prpl-3 | histamine | rpl-3 UTR]", "sequence-type": "addgene-full", "addgene_id": "159796", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000349", + "https://www.ncbi.nlm.nih.gov/pubmed/33437931" + ], "kit": null, "att_sites": [ "attB1", @@ -357789,7 +379440,6 @@ "plasmid_name": "R777-E233 Hs.RASAL1", "sequence-type": "depositor-full", "addgene_id": "70517", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -357817,7 +379467,10 @@ "plasmid_name": "pT2-cryR;clecl14aCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90157", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -357865,7 +379518,10 @@ "plasmid_name": "pDONR221-SLC9C1_STOP", "sequence-type": "addgene-full", "addgene_id": "161413", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -357896,7 +379552,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-miniTurbo-YFP-NLS", "sequence-type": "addgene-full", "addgene_id": "127370", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attB1", @@ -357944,7 +379603,10 @@ "plasmid_name": "pYPQ166-OsPE2", "sequence-type": "addgene-full", "addgene_id": "141080", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2020.03.010", + "https://www.ncbi.nlm.nih.gov/pubmed/32222487" + ], "kit": null, "att_sites": [ "attL1", @@ -357978,7 +379640,10 @@ "plasmid_name": "pHAGE-SMAD4-K436N", "sequence-type": "addgene-full", "addgene_id": "116682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -358032,7 +379697,10 @@ "plasmid_name": "p35S::SISOBIR1-YFPc", "sequence-type": "addgene-full", "addgene_id": "86164", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "att_sites": [ "attB1", @@ -358065,7 +379733,10 @@ "plasmid_name": "pHAGE-PTEN-D24G", "sequence-type": "addgene-full", "addgene_id": "116619", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -358119,7 +379790,10 @@ "plasmid_name": "pDONR221_SLC46A1", "sequence-type": "addgene-full", "addgene_id": "132191", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -358150,7 +379824,10 @@ "plasmid_name": "pENTR221-CMV.Pro", "sequence-type": "addgene-full", "addgene_id": "79486", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL1", @@ -358184,7 +379861,10 @@ "plasmid_name": "pDONR223-CAMK2A", "sequence-type": "addgene-full", "addgene_id": "23408", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -358216,7 +379896,10 @@ "plasmid_name": "pWZL Neo Myr Flag STK33", "sequence-type": "addgene-full", "addgene_id": "20641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -358257,7 +379940,10 @@ "plasmid_name": "C453-E14: attB4-EF1p>-attB5", "sequence-type": "addgene-full", "addgene_id": "162975", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -358286,7 +379972,10 @@ "plasmid_name": "pEntr_Myc-BirA-G3-ER", "sequence-type": "addgene-full", "addgene_id": "173814", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22599-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33888706" + ], "kit": null, "att_sites": [ "attL1", @@ -358319,7 +380008,10 @@ "plasmid_name": "pENTR223-BdRF1", "sequence-type": "addgene-full", "addgene_id": "195802", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -358348,7 +380040,10 @@ "plasmid_name": "pLX304_miRFP670nano-P2A-ERM-gCam6f", "sequence-type": "addgene-full", "addgene_id": "214927", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.113544", + "https://www.ncbi.nlm.nih.gov/pubmed/38060381" + ], "kit": null, "att_sites": [ "attB1" @@ -358410,7 +380105,6 @@ "plasmid_name": "pcDNA3.1-ccdB-Firefly", "sequence-type": "addgene-full", "addgene_id": "87066", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -358464,7 +380158,10 @@ "plasmid_name": "p2R3a-nosT", "sequence-type": "depositor-full", "addgene_id": "71272", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL3", @@ -358501,7 +380198,6 @@ "plasmid_name": "Act5C-pDONR221", "sequence-type": "addgene-full", "addgene_id": "124242", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -358532,7 +380228,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK32B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170609", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -358598,7 +380293,10 @@ "plasmid_name": "pCR8/GW/TOPO-ELK3", "sequence-type": "addgene-full", "addgene_id": "98622", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -358627,7 +380325,10 @@ "plasmid_name": "pDONR223_CDC42_WT", "sequence-type": "addgene-full", "addgene_id": "82104", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -358657,7 +380358,6 @@ "plasmid_name": "pENTR L1-13XLexAop2-R5", "sequence-type": "depositor-full", "addgene_id": "41433", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -358690,7 +380390,10 @@ "plasmid_name": "pLX303", "sequence-type": "addgene-full", "addgene_id": "25897", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "att_sites": [ "attR1", @@ -358753,7 +380456,10 @@ "plasmid_name": "pENTR4-hDND1", "sequence-type": "depositor-full", "addgene_id": "70070", - "references": [], + "references": [ + "https://doi.org/10.1038/nature21690", + "https://www.ncbi.nlm.nih.gov/pubmed/28297718" + ], "kit": null, "att_sites": [ "attL1", @@ -358780,7 +380486,10 @@ "plasmid_name": "pDONR221-NIPAL4", "sequence-type": "addgene-full", "addgene_id": "132271", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -358811,7 +380520,10 @@ "plasmid_name": "R989-X02-566: His6-MBP-tev-G-Hs.KRAS4b(1-169)", "sequence-type": "addgene-full", "addgene_id": "159539", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -358857,7 +380569,10 @@ "plasmid_name": "pDEST26-USP47", "sequence-type": "addgene-full", "addgene_id": "64326", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2011.02.016", + "https://www.ncbi.nlm.nih.gov/pubmed/21362556" + ], "kit": null, "att_sites": [ "attB1", @@ -358904,7 +380619,6 @@ "plasmid_name": "R777-E275 Hs.RHEB", "sequence-type": "depositor-full", "addgene_id": "70559", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -358932,7 +380646,10 @@ "plasmid_name": "pDONR221_SLC19A3", "sequence-type": "addgene-full", "addgene_id": "132045", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -358963,7 +380680,10 @@ "plasmid_name": "pJW4.18", "sequence-type": "depositor-full", "addgene_id": "62873", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -359007,7 +380727,6 @@ "plasmid_name": "pDONR221-hspa13", "sequence-type": "addgene-full", "addgene_id": "192730", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -359038,7 +380757,10 @@ "plasmid_name": "pCellFree_G06", "sequence-type": "depositor-full", "addgene_id": "67140", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "att_sites": [ "attR1", @@ -359078,7 +380800,10 @@ "plasmid_name": "pRU51", "sequence-type": "addgene-full", "addgene_id": "167677", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -359124,7 +380849,10 @@ "plasmid_name": "pDONR223_REG3A_p.G85R", "sequence-type": "addgene-full", "addgene_id": "81299", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -359156,7 +380884,6 @@ "plasmid_name": "IDG_TTYH1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161627", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -359215,7 +380942,10 @@ "plasmid_name": "pCAG/ATP10D(E215Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209248", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "att_sites": [ "attB1", @@ -359260,7 +380990,10 @@ "plasmid_name": "pHAGE-MAN2B1", "sequence-type": "addgene-full", "addgene_id": "116756", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -359310,7 +381043,10 @@ "plasmid_name": "pLX303-PCDH7-d", "sequence-type": "addgene-full", "addgene_id": "108541", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-1267-T", + "https://www.ncbi.nlm.nih.gov/pubmed/27821484" + ], "kit": null, "att_sites": [ "attB1", @@ -359368,7 +381104,10 @@ "plasmid_name": "p{3P3-dsRed::KD-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182179", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -359410,7 +381149,10 @@ "plasmid_name": "pSLIK TT RBFOX2", "sequence-type": "addgene-full", "addgene_id": "59770", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.235770.113", + "https://www.ncbi.nlm.nih.gov/pubmed/24637117" + ], "kit": null, "att_sites": [ "attB1", @@ -359475,7 +381217,10 @@ "plasmid_name": "A1-LCD-10G+10S", "sequence-type": "addgene-full", "addgene_id": "178682", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -359510,7 +381255,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SYMPK", "sequence-type": "addgene-full", "addgene_id": "222556", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -359556,7 +381303,10 @@ "plasmid_name": "p3E-rab5c-CA", "sequence-type": "addgene-full", "addgene_id": "109738", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -359587,7 +381337,10 @@ "plasmid_name": "pDONR223_GABRA6_p.G175R", "sequence-type": "addgene-full", "addgene_id": "81428", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -359619,7 +381372,6 @@ "plasmid_name": "pmCell-Free_KA1_SARS-COV-2_S-frag3", "sequence-type": "addgene-full", "addgene_id": "169403", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -359661,7 +381413,10 @@ "plasmid_name": "LF901: pMAGIC (L1-R5) mU6::SaCas9 gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121811", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -359694,7 +381449,10 @@ "plasmid_name": "pDONR221-MPC2_STOP", "sequence-type": "addgene-full", "addgene_id": "161096", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -359725,7 +381483,10 @@ "plasmid_name": "TFORF3457", "sequence-type": "addgene-full", "addgene_id": "144933", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -359786,7 +381547,10 @@ "plasmid_name": "pHAGE-BRAF-V600L", "sequence-type": "addgene-full", "addgene_id": "116207", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -359841,7 +381605,10 @@ "plasmid_name": "pDONR221_SLC10A7", "sequence-type": "addgene-full", "addgene_id": "131872", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -359872,7 +381639,10 @@ "plasmid_name": "TFORF3211", "sequence-type": "addgene-full", "addgene_id": "144687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -359932,7 +381702,10 @@ "plasmid_name": "TFORF3091", "sequence-type": "addgene-full", "addgene_id": "144567", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -359992,7 +381765,9 @@ "plasmid_name": "pME-LexA-mODC-LexOP-c-Fos (JDW 1359)", "sequence-type": "addgene-full", "addgene_id": "224506", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224506.addgene-full.gb" }, @@ -360001,7 +381776,10 @@ "plasmid_name": "pDONR221-SLC9A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161376", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -360033,7 +381811,10 @@ "plasmid_name": "R619-M63-303: CMV51p> SARS-CoV-2 S(1-1208)-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166010", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/166010.addgene-full.gb" }, @@ -360042,7 +381823,6 @@ "plasmid_name": "R777-E139 Hs.NF1", "sequence-type": "depositor-full", "addgene_id": "70423", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -360069,7 +381849,10 @@ "plasmid_name": "pAG423GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14390", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -360131,7 +381914,10 @@ "plasmid_name": "RY1", "sequence-type": "addgene-full", "addgene_id": "155986", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -360174,7 +381960,10 @@ "plasmid_name": "pMuLE ENTR SV40 CreERT2 L3-L2", "sequence-type": "depositor-full", "addgene_id": "62174", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -360211,7 +382000,10 @@ "plasmid_name": "TFORF3277", "sequence-type": "addgene-full", "addgene_id": "144753", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -360271,7 +382063,10 @@ "plasmid_name": "p3E-rab20", "sequence-type": "addgene-full", "addgene_id": "109677", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -360302,7 +382097,10 @@ "plasmid_name": "pDONR223_KEAP1_p.P318L", "sequence-type": "addgene-full", "addgene_id": "81567", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -360334,7 +382132,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_UBA/UIM/ UBM-mut", "sequence-type": "addgene-full", "addgene_id": "187154", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -360379,7 +382180,6 @@ "plasmid_name": "pEFS 3-2", "sequence-type": "depositor-full", "addgene_id": "20107", - "references": [], "kit": null, "att_sites": [ "attL2", @@ -360410,7 +382210,10 @@ "plasmid_name": "pDONR221-Sgd1", "sequence-type": "addgene-full", "addgene_id": "100000", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attL1", @@ -360441,7 +382244,10 @@ "plasmid_name": "5'-3xFLAG Sap30bp-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212072", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -360481,7 +382287,10 @@ "plasmid_name": "pDONR223_BRAF_p.N581S", "sequence-type": "addgene-full", "addgene_id": "81687", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -360514,7 +382323,10 @@ "plasmid_name": "actc1b-mKate2-rab11bb", "sequence-type": "addgene-full", "addgene_id": "109597", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -360556,7 +382368,10 @@ "plasmid_name": "DMGDH", "sequence-type": "addgene-full", "addgene_id": "155549", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -360599,7 +382414,10 @@ "plasmid_name": "TFORF2952", "sequence-type": "addgene-full", "addgene_id": "144428", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -360659,7 +382477,6 @@ "plasmid_name": "Hs.KRAS4b G12S", "sequence-type": "depositor-full", "addgene_id": "83144", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -360685,7 +382502,10 @@ "plasmid_name": "pDONR221-SLC35F6_STOP", "sequence-type": "addgene-full", "addgene_id": "161239", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -360716,7 +382536,10 @@ "plasmid_name": "TCF7L2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98373", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -360776,7 +382599,10 @@ "plasmid_name": "pYPQ-Un1Cas12f1", "sequence-type": "addgene-full", "addgene_id": "205143", - "references": [], + "references": [ + "https://doi.org/10.1002/tpg2.20465", + "https://www.ncbi.nlm.nih.gov/pubmed/38807445" + ], "kit": null, "att_sites": [ "attL1", @@ -360808,7 +382634,10 @@ "plasmid_name": "pENTR-p38KTRmCerulean3", "sequence-type": "depositor-full", "addgene_id": "59149", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attL1", @@ -360836,7 +382665,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM S297A", "sequence-type": "addgene-full", "addgene_id": "169983", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attB1", @@ -360888,7 +382720,10 @@ "plasmid_name": "pLV-EF1A-LivePAR(Y107A)-Hygro", "sequence-type": "addgene-full", "addgene_id": "176073", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109917", + "https://www.ncbi.nlm.nih.gov/pubmed/34731617" + ], "kit": null, "att_sites": [ "attB1", @@ -360954,7 +382789,10 @@ "plasmid_name": "pDONR223_FGFR3_p.S779R", "sequence-type": "addgene-full", "addgene_id": "82801", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -360983,7 +382821,10 @@ "plasmid_name": "pEntry_HCoV-229E-ORF4b", "sequence-type": "depositor-full", "addgene_id": "168964", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -361012,7 +382853,9 @@ "plasmid_name": "pLV-tet2puro-gal4DBD-HIFCAD", "sequence-type": "addgene-full", "addgene_id": "207173", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "att_sites": [ "attB1", @@ -361064,7 +382907,10 @@ "plasmid_name": "pHAGE-ERBB2-R868W", "sequence-type": "addgene-full", "addgene_id": "116348", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -361118,7 +382964,6 @@ "plasmid_name": "pENTRY4_Rac5", "sequence-type": "addgene-full", "addgene_id": "126897", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -361153,7 +382998,10 @@ "plasmid_name": "pVYD", "sequence-type": "depositor-full", "addgene_id": "61302", - "references": [], + "references": [ + "https://doi.org/10.1038/srep06453", + "https://www.ncbi.nlm.nih.gov/pubmed/25262659" + ], "kit": null, "att_sites": [ "attR1", @@ -361191,7 +383039,6 @@ "plasmid_name": "pCWXPGR-pTF-ERK:MEK", "sequence-type": "addgene-full", "addgene_id": "114291", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -361252,7 +383099,10 @@ "plasmid_name": "pYPQ284-RVR", "sequence-type": "addgene-full", "addgene_id": "138117", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -361284,7 +383134,10 @@ "plasmid_name": "pDONR223_LCE1B_WT", "sequence-type": "addgene-full", "addgene_id": "81841", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -361316,7 +383169,10 @@ "plasmid_name": "pHAGE-BRAF-E648Q", "sequence-type": "addgene-full", "addgene_id": "116141", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -361371,7 +383227,6 @@ "plasmid_name": "R777-E305 Hs.SCRIB", "sequence-type": "depositor-full", "addgene_id": "70589", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -361400,7 +383255,10 @@ "plasmid_name": "p3E-rab3c", "sequence-type": "addgene-full", "addgene_id": "109705", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -361431,7 +383289,9 @@ "plasmid_name": "pDONR221-DDX3X", "sequence-type": "addgene-full", "addgene_id": "166162", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -361462,7 +383322,10 @@ "plasmid_name": "pENTR223-BPLF1_1-1000", "sequence-type": "addgene-full", "addgene_id": "198582", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -361491,7 +383354,10 @@ "plasmid_name": "pDEST47-ARL8A-GFP", "sequence-type": "addgene-full", "addgene_id": "67403", - "references": [], + "references": [ + "https://doi.org/10.1080/21592799.2015.1090523", + "https://www.ncbi.nlm.nih.gov/pubmed/27057421" + ], "kit": null, "att_sites": [ "attB1", @@ -361543,7 +383409,10 @@ "plasmid_name": "JD602: pMVP (L3-L2) APEX2 + WPRE", "sequence-type": "addgene-full", "addgene_id": "121798", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -361578,7 +383447,10 @@ "plasmid_name": "pDONR223_WIPI1_p.P139S", "sequence-type": "addgene-full", "addgene_id": "81415", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -361610,7 +383482,10 @@ "plasmid_name": "pEPYCeGM0022", "sequence-type": "addgene-full", "addgene_id": "196147", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attL1", @@ -361634,7 +383509,10 @@ "plasmid_name": "pENTR D-TOPO-C3_8", "sequence-type": "depositor-full", "addgene_id": "60257", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -361665,7 +383543,10 @@ "plasmid_name": "pDONR223_DARC_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82973", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -361694,7 +383575,10 @@ "plasmid_name": "MAC3-EGFR", "sequence-type": "addgene-full", "addgene_id": "222610", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "att_sites": [ "attB1", @@ -361738,7 +383622,10 @@ "plasmid_name": "IH101: pMVP (L5-L4) OLLAS epitope tag", "sequence-type": "addgene-full", "addgene_id": "121703", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -361771,7 +383658,9 @@ "plasmid_name": "pDONR221-TXNL1(v1)", "sequence-type": "addgene-full", "addgene_id": "166219", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166219.addgene-full.gb" }, @@ -361780,7 +383669,9 @@ "plasmid_name": "pDONR221 FLAG-APEX2-P4C-IRES-mNeonGreen", "sequence-type": "addgene-full", "addgene_id": "218645", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "att_sites": [ "attL1", @@ -361817,7 +383708,10 @@ "plasmid_name": "pMMK ENTR 3 polH aeBlue polH VSV-G", "sequence-type": "addgene-full", "addgene_id": "206278", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206278.addgene-full.gb" }, @@ -361826,7 +383720,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-mCBP80", "sequence-type": "addgene-full", "addgene_id": "192313", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -361862,7 +383759,10 @@ "plasmid_name": "pENTR-ZmIAA12", "sequence-type": "addgene-full", "addgene_id": "188435", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -361893,7 +383793,9 @@ "plasmid_name": "pMpGWB222", "sequence-type": "depositor-full", "addgene_id": "68613", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -361940,7 +383842,10 @@ "plasmid_name": "pAG425GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14274", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -362000,7 +383905,10 @@ "plasmid_name": "E228Q Vps4A-HA", "sequence-type": "addgene-full", "addgene_id": "200087", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2023.106150", + "https://www.ncbi.nlm.nih.gov/pubmed/36890792" + ], "kit": null, "att_sites": [ "attB1", @@ -362053,7 +383961,10 @@ "plasmid_name": "pCZGY2139", "sequence-type": "depositor-full", "addgene_id": "74111", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attL1", @@ -362083,7 +383994,10 @@ "plasmid_name": "pMuLE ENTR CMV L1-R5", "sequence-type": "depositor-full", "addgene_id": "62090", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62090.depositor-full.gb" }, @@ -362092,7 +384006,10 @@ "plasmid_name": "pCFJ108 - pENTR221 - [cbr-unc-119(+)]", "sequence-type": "addgene-full", "addgene_id": "200367", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000870", + "https://www.ncbi.nlm.nih.gov/pubmed/37426742" + ], "kit": null, "att_sites": [ "attL1", @@ -362123,7 +384040,10 @@ "plasmid_name": "pDONR221-SLC44A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161392", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -362154,7 +384074,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP12", "sequence-type": "addgene-full", "addgene_id": "158363", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -362199,7 +384122,10 @@ "plasmid_name": "actc1b-mKate2-CDC42", "sequence-type": "addgene-full", "addgene_id": "109531", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -362241,7 +384167,10 @@ "plasmid_name": "TFORF2939", "sequence-type": "addgene-full", "addgene_id": "144415", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -362301,7 +384230,10 @@ "plasmid_name": "pDONR223_KEAP1_p.R470H", "sequence-type": "addgene-full", "addgene_id": "81621", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -362333,7 +384265,10 @@ "plasmid_name": "pDONR221-SLC25A13_STOP", "sequence-type": "addgene-full", "addgene_id": "161204", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -362364,7 +384299,9 @@ "plasmid_name": "p5E-EFS (EF1a core) (JDW 1319)", "sequence-type": "addgene-full", "addgene_id": "224474", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -362398,7 +384335,10 @@ "plasmid_name": "pDONR223_SMAD4_p.D493N", "sequence-type": "addgene-full", "addgene_id": "82788", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -362427,7 +384367,10 @@ "plasmid_name": "pEBTetDBl-CLIP-CP110", "sequence-type": "addgene-full", "addgene_id": "136852", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -362470,7 +384413,10 @@ "plasmid_name": "FLAG-PPP2R5E siRNA-resistant", "sequence-type": "addgene-full", "addgene_id": "120861", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.201608", + "https://www.ncbi.nlm.nih.gov/pubmed/28404789" + ], "kit": null, "file": "data/addgene_plasmids/120861.addgene-full.gb" }, @@ -362479,7 +384425,10 @@ "plasmid_name": "pDONR221_SLC17A2", "sequence-type": "addgene-full", "addgene_id": "131900", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -362510,7 +384459,10 @@ "plasmid_name": "pHAGE-EZH2-N322S", "sequence-type": "addgene-full", "addgene_id": "116375", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -362564,7 +384516,10 @@ "plasmid_name": "TFORF3365", "sequence-type": "addgene-full", "addgene_id": "144841", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -362624,7 +384579,10 @@ "plasmid_name": "pMP71-HLA-B0702-His", "sequence-type": "addgene-full", "addgene_id": "104850", - "references": [], + "references": [ + "https://doi.org/10.4049/immunohorizons.1800029", + "https://www.ncbi.nlm.nih.gov/pubmed/31022685" + ], "kit": null, "att_sites": [ "attB1", @@ -362661,7 +384619,10 @@ "plasmid_name": "pMx/ATP10A-HA", "sequence-type": "addgene-full", "addgene_id": "209232", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209232.addgene-full.gb" }, @@ -362670,7 +384631,10 @@ "plasmid_name": "pLKO.DEST.hygro", "sequence-type": "depositor-full", "addgene_id": "32685", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "att_sites": [ "attR1", @@ -362720,7 +384684,6 @@ "plasmid_name": "pSMPUW_8.2_M3_CAMKIIA-gateway-V5-SV40", "sequence-type": "addgene-full", "addgene_id": "128462", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -362763,7 +384726,10 @@ "plasmid_name": "pCM3.19", "sequence-type": "depositor-full", "addgene_id": "19401", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -362787,7 +384753,10 @@ "plasmid_name": "pDONR223_FTH1_p.A161T", "sequence-type": "addgene-full", "addgene_id": "81278", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -362819,7 +384788,10 @@ "plasmid_name": "pAG415GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14145", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -362877,7 +384849,6 @@ "plasmid_name": "pENTR hH1-ARRET", "sequence-type": "depositor-full", "addgene_id": "111382", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -362910,7 +384881,10 @@ "plasmid_name": "pQCXIN- myc ULK1 wt", "sequence-type": "addgene-full", "addgene_id": "27626", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1196371", + "https://www.ncbi.nlm.nih.gov/pubmed/21205641" + ], "kit": null, "att_sites": [ "attB1", @@ -362954,7 +384928,10 @@ "plasmid_name": "pGWT35S-KON206-MXMT", "sequence-type": "addgene-full", "addgene_id": "182729", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "att_sites": [ "attB1", @@ -362996,7 +384973,10 @@ "plasmid_name": "pJJiaDEST-APEX2-GAL9", "sequence-type": "addgene-full", "addgene_id": "149520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.009", + "https://www.ncbi.nlm.nih.gov/pubmed/29625033" + ], "kit": null, "att_sites": [ "attB1", @@ -363051,7 +385031,6 @@ "plasmid_name": "pDONR221-TMPRSS2", "sequence-type": "addgene-full", "addgene_id": "158441", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -363080,7 +385059,10 @@ "plasmid_name": "pBullet-pm-c", "sequence-type": "depositor-full", "addgene_id": "53078", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -363117,7 +385099,10 @@ "plasmid_name": "THOC5", "sequence-type": "addgene-full", "addgene_id": "156084", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -363161,7 +385146,10 @@ "plasmid_name": "PB-TAC-OKMS", "sequence-type": "depositor-full", "addgene_id": "80480", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "att_sites": [ "attB1", @@ -363213,7 +385201,10 @@ "plasmid_name": "pCPP5951", "sequence-type": "addgene-full", "addgene_id": "128719", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000388", + "https://www.ncbi.nlm.nih.gov/pubmed/19381254" + ], "kit": null, "att_sites": [ "attL1", @@ -363245,7 +385236,10 @@ "plasmid_name": "2Flag-pDEST-C", "sequence-type": "addgene-full", "addgene_id": "118372", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attR1", @@ -363293,7 +385287,10 @@ "plasmid_name": "pHAGE-WDR12", "sequence-type": "addgene-full", "addgene_id": "116803", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -363343,7 +385340,10 @@ "plasmid_name": "pYPQ292-D977A", "sequence-type": "addgene-full", "addgene_id": "129680", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -363375,7 +385375,10 @@ "plasmid_name": "R989-X11-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) G13D", "sequence-type": "addgene-full", "addgene_id": "159543", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -363421,7 +385424,9 @@ "plasmid_name": "pFLIP34", "sequence-type": "depositor-full", "addgene_id": "65501", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -363457,7 +385462,10 @@ "plasmid_name": "HS-Utrophin-GFP", "sequence-type": "addgene-full", "addgene_id": "105952", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25600237" + ], "kit": null, "att_sites": [ "attB1", @@ -363506,7 +385514,10 @@ "plasmid_name": "pH7m34GW-35S:SNACS S785A", "sequence-type": "addgene-full", "addgene_id": "203577", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.56351", + "https://www.ncbi.nlm.nih.gov/pubmed/32463362" + ], "kit": null, "att_sites": [ "attB1", @@ -363554,7 +385565,10 @@ "plasmid_name": "pDONR221 NLRP1 T755N", "sequence-type": "addgene-full", "addgene_id": "166820", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -363587,7 +385601,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP1", "sequence-type": "addgene-full", "addgene_id": "141255", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -363611,7 +385628,10 @@ "plasmid_name": "pHAGE-PIK3CA-C420R", "sequence-type": "addgene-full", "addgene_id": "116457", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -363666,7 +385686,10 @@ "plasmid_name": "pGM32DEST", "sequence-type": "depositor-full", "addgene_id": "74747", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301705", + "https://www.ncbi.nlm.nih.gov/pubmed/30504365" + ], "kit": null, "att_sites": [ "attR1", @@ -363704,7 +385727,6 @@ "plasmid_name": "R777-E107 Hs.INSRR", "sequence-type": "depositor-full", "addgene_id": "70391", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -363733,7 +385755,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MKNK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170593", - "references": [], "kit": null, "file": "data/addgene_plasmids/170593.addgene-full.gb" }, @@ -363742,7 +385763,10 @@ "plasmid_name": "pDESTmycDICER", "sequence-type": "addgene-full", "addgene_id": "19873", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -363790,7 +385814,6 @@ "plasmid_name": "pME-QF2", "sequence-type": "addgene-full", "addgene_id": "83307", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -363826,7 +385849,10 @@ "plasmid_name": "pENTR-R2L4", "sequence-type": "addgene-full", "addgene_id": "141061", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL4", @@ -363849,7 +385875,10 @@ "plasmid_name": "pHAGE-PIK3CG-S806F", "sequence-type": "addgene-full", "addgene_id": "116583", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -363904,7 +385933,10 @@ "plasmid_name": "pGWT35S-RBCS1a(1\u201379)-TagRFP", "sequence-type": "addgene-full", "addgene_id": "182586", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "att_sites": [ "attB1", @@ -363947,7 +385979,10 @@ "plasmid_name": "pPWCh", "sequence-type": "addgene-full", "addgene_id": "124238", - "references": [], + "references": [ + "https://doi.org/10.1002/cbin.10607", + "https://www.ncbi.nlm.nih.gov/pubmed/27006187" + ], "kit": null, "att_sites": [ "attR1", @@ -363984,7 +386019,10 @@ "plasmid_name": "pDONR223_MAGEC2_p.S85I", "sequence-type": "addgene-full", "addgene_id": "81337", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -364016,7 +386054,10 @@ "plasmid_name": "JAM2_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176997", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -364071,7 +386112,10 @@ "plasmid_name": "pCFJ2442 - [1-2] ENTR - Fluor - ce-tagRFP-T(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159858", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -364104,7 +386148,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP14", "sequence-type": "addgene-full", "addgene_id": "169387", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -364147,7 +386190,10 @@ "plasmid_name": "pMuLE ENTR U6 n.s shRNA L5-L4", "sequence-type": "addgene-full", "addgene_id": "62138", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL4", @@ -364181,7 +386227,6 @@ "plasmid_name": "R777-E161 Hs.PEBP1", "sequence-type": "depositor-full", "addgene_id": "70445", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -364209,7 +386254,10 @@ "plasmid_name": "pHAGE-PIK3CA-N345T", "sequence-type": "addgene-full", "addgene_id": "116518", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -364263,7 +386311,10 @@ "plasmid_name": "pMuLE ENTR U6 L1-L4", "sequence-type": "depositor-full", "addgene_id": "62112", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -364297,7 +386348,10 @@ "plasmid_name": "pDONR221-LETM1", "sequence-type": "addgene-full", "addgene_id": "132290", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -364328,7 +386382,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(L301R/V306R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128656", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -364378,7 +386435,10 @@ "plasmid_name": "pDONR221_SLC5A4", "sequence-type": "addgene-full", "addgene_id": "132170", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -364409,7 +386469,10 @@ "plasmid_name": "pCMB-MITr", "sequence-type": "depositor-full", "addgene_id": "61199", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -364455,7 +386518,10 @@ "plasmid_name": "pDONR221-NPC1L1_STOP", "sequence-type": "addgene-full", "addgene_id": "161469", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -364487,7 +386553,10 @@ "plasmid_name": "Flag-HA-USP15", "sequence-type": "addgene-full", "addgene_id": "22570", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -364532,7 +386601,10 @@ "plasmid_name": "pLX304_C12orf49-V5", "sequence-type": "addgene-full", "addgene_id": "155110", - "references": [], + "references": [ + "https://doi.org/10.1038/s42255-020-0211-z", + "https://www.ncbi.nlm.nih.gov/pubmed/32694731" + ], "kit": null, "att_sites": [ "attB1", @@ -364591,7 +386663,6 @@ "plasmid_name": "pcDNA-SUN1 mApple", "sequence-type": "addgene-full", "addgene_id": "187676", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -364644,7 +386715,10 @@ "plasmid_name": "pINDUCER-21-RUNX1-P2A-ERG-IMPROVED", "sequence-type": "addgene-full", "addgene_id": "154089", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "att_sites": [ "attB1", @@ -364701,7 +386775,10 @@ "plasmid_name": "tetO-SMARCD3", "sequence-type": "addgene-full", "addgene_id": "170701", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -364764,7 +386841,10 @@ "plasmid_name": "PB-TA-ERP2-hcGAS(wt)", "sequence-type": "addgene-full", "addgene_id": "208396", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06889-6", + "https://www.ncbi.nlm.nih.gov/pubmed/38200309" + ], "kit": null, "att_sites": [ "attB1", @@ -364819,7 +386899,10 @@ "plasmid_name": "pFRT_TO_FlagHA_USP10_C424A", "sequence-type": "addgene-full", "addgene_id": "127103", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.12.024", + "https://www.ncbi.nlm.nih.gov/pubmed/31981475" + ], "kit": null, "att_sites": [ "attB1", @@ -364864,7 +386947,6 @@ "plasmid_name": "IDG_CACNB1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161660", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -364923,7 +387005,10 @@ "plasmid_name": "pLX307 P2A GFP YAP1", "sequence-type": "addgene-full", "addgene_id": "193675", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -364989,7 +387074,10 @@ "plasmid_name": "pYPQ292 (AaCas12b)-D570A-TV-MS2-VPR", "sequence-type": "addgene-full", "addgene_id": "136382", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -365026,7 +387114,9 @@ "plasmid_name": "pFLIP43", "sequence-type": "depositor-full", "addgene_id": "65618", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65618.depositor-full.gb" }, @@ -365035,7 +387125,10 @@ "plasmid_name": "pDONR223-PRKD1", "sequence-type": "addgene-full", "addgene_id": "23500", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -365067,7 +387160,10 @@ "plasmid_name": "pDONR221_SLC35B1", "sequence-type": "addgene-full", "addgene_id": "132099", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -365098,7 +387194,10 @@ "plasmid_name": "pHAGE-AKT3", "sequence-type": "addgene-full", "addgene_id": "116711", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -365148,7 +387247,10 @@ "plasmid_name": "SMN1-1", "sequence-type": "addgene-full", "addgene_id": "156022", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -365191,7 +387293,10 @@ "plasmid_name": "pDONR221_SLC24A5", "sequence-type": "addgene-full", "addgene_id": "132002", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -365222,7 +387327,10 @@ "plasmid_name": "pCPP3417", "sequence-type": "addgene-full", "addgene_id": "128724", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -365253,7 +387361,10 @@ "plasmid_name": "pcDNA4/TO/GFP-GIGYF1", "sequence-type": "addgene-full", "addgene_id": "141188", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.03.006", + "https://www.ncbi.nlm.nih.gov/pubmed/30917308" + ], "kit": null, "att_sites": [ "attB1", @@ -365305,7 +387416,10 @@ "plasmid_name": "EGFP-Hu_Plk5(WT)", "sequence-type": "addgene-full", "addgene_id": "136319", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.00607-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21245385" + ], "kit": null, "att_sites": [ "attB1", @@ -365358,7 +387472,10 @@ "plasmid_name": "FU-tetO-Gateway", "sequence-type": "addgene-full", "addgene_id": "43914", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0028719", + "https://www.ncbi.nlm.nih.gov/pubmed/22174877" + ], "kit": null, "att_sites": [ "attR1", @@ -365425,7 +387542,10 @@ "plasmid_name": "pAG423GPD-EYFP-ccdB", "sequence-type": "addgene-full", "addgene_id": "14342", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -365488,7 +387608,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP15", "sequence-type": "addgene-full", "addgene_id": "141268", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -365517,7 +387640,10 @@ "plasmid_name": "pDL17", "sequence-type": "addgene-full", "addgene_id": "175898", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -365548,7 +387674,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS4B", "sequence-type": "addgene-full", "addgene_id": "145347", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -365591,7 +387720,10 @@ "plasmid_name": "C417-E01: attB4-polyhedrinp>His6-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162932", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -365626,7 +387758,10 @@ "plasmid_name": "pPB-cT3G-cERP2-MAFF", "sequence-type": "addgene-full", "addgene_id": "192917", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -365672,7 +387807,6 @@ "plasmid_name": "p41Nat 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58553", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -365727,7 +387861,10 @@ "plasmid_name": "pDONR221_SLCO4A1", "sequence-type": "addgene-full", "addgene_id": "132236", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -365758,7 +387895,10 @@ "plasmid_name": "pJRA107", "sequence-type": "addgene-full", "addgene_id": "209340", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -365798,7 +387938,10 @@ "plasmid_name": "pDONR223_MAP3K2_WT", "sequence-type": "addgene-full", "addgene_id": "82143", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -365827,7 +387970,10 @@ "plasmid_name": "MAC_N_NFIC", "sequence-type": "addgene-full", "addgene_id": "187739", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -365872,7 +388018,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-mir-240", "sequence-type": "depositor-full", "addgene_id": "46742", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46742.depositor-full.gb" }, @@ -365881,7 +388030,10 @@ "plasmid_name": "pAG306GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14212", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -365939,7 +388091,10 @@ "plasmid_name": "pDONR223_SGK1_p.F27L", "sequence-type": "addgene-full", "addgene_id": "81391", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -365971,7 +388126,6 @@ "plasmid_name": "pcDNA3-hFCER1G-VenusFlag", "sequence-type": "addgene-full", "addgene_id": "211899", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -366025,7 +388179,10 @@ "plasmid_name": "pCFJ2301 - [1-2] ENTR - Fluor - ce-mMaple3(1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159865", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -366058,7 +388215,10 @@ "plasmid_name": "pHAGE-PIK3CA-P539R", "sequence-type": "addgene-full", "addgene_id": "116525", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -366113,7 +388273,6 @@ "plasmid_name": "pEF 1-PFF-4", "sequence-type": "depositor-full", "addgene_id": "20085", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -366144,7 +388303,10 @@ "plasmid_name": "pLD-puro-Cc-TARDBP-WT_VA", "sequence-type": "addgene-full", "addgene_id": "141327", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "att_sites": [ "attB1", @@ -366206,7 +388368,9 @@ "plasmid_name": "pMpGWB410", "sequence-type": "depositor-full", "addgene_id": "68675", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -366256,7 +388420,10 @@ "plasmid_name": "pcDNA3.1 GW-NL-myc", "sequence-type": "addgene-full", "addgene_id": "113447", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "att_sites": [ "attR1", @@ -366312,7 +388479,10 @@ "plasmid_name": "pDONR221-SLC4A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161454", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -366343,7 +388513,10 @@ "plasmid_name": "pSws1-nfsB-CFP", "sequence-type": "depositor-full", "addgene_id": "86375", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms10590", + "https://www.ncbi.nlm.nih.gov/pubmed/26838932" + ], "kit": null, "att_sites": [ "attB1", @@ -366389,7 +388562,10 @@ "plasmid_name": "pDONR223_TNFAIP3_WT", "sequence-type": "addgene-full", "addgene_id": "82238", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -366418,7 +388594,10 @@ "plasmid_name": "FAS_pLX307", "sequence-type": "addgene-full", "addgene_id": "98334", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -366478,7 +388657,10 @@ "plasmid_name": "MAC-GPR78", "sequence-type": "addgene-full", "addgene_id": "158382", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -366523,7 +388705,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-133a-1", "sequence-type": "depositor-full", "addgene_id": "46676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -366573,7 +388758,6 @@ "plasmid_name": "pFRT-TODestGFP_HuC", "sequence-type": "depositor-full", "addgene_id": "65762", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -366620,7 +388804,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.L699M", "sequence-type": "addgene-full", "addgene_id": "82846", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -366649,7 +388836,10 @@ "plasmid_name": "cavin-3-HA", "sequence-type": "depositor-full", "addgene_id": "27711", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1600-0854.2009.01023.x", + "https://www.ncbi.nlm.nih.gov/pubmed/20070607" + ], "kit": null, "att_sites": [ "attB1", @@ -366699,7 +388889,10 @@ "plasmid_name": "pME-NR2F2", "sequence-type": "addgene-full", "addgene_id": "138359", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attL1", @@ -366732,7 +388925,10 @@ "plasmid_name": "pEBTet-SNAP-ALMS1", "sequence-type": "addgene-full", "addgene_id": "136828", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -366779,7 +388975,10 @@ "plasmid_name": "pLX401-INK4A", "sequence-type": "addgene-full", "addgene_id": "121919", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-18-3066", + "https://www.ncbi.nlm.nih.gov/pubmed/30755442" + ], "kit": null, "att_sites": [ "attB1", @@ -366833,7 +389032,10 @@ "plasmid_name": "pDONR221-SLC16A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161105", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -366865,7 +389067,10 @@ "plasmid_name": "pDONR223_SMAD4_p.P356R", "sequence-type": "addgene-full", "addgene_id": "82769", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -366894,7 +389099,10 @@ "plasmid_name": "pDONR223_NFE2L2_p.G31R", "sequence-type": "addgene-full", "addgene_id": "81520", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -366926,7 +389134,10 @@ "plasmid_name": "pHPdestmCherry", "sequence-type": "depositor-full", "addgene_id": "24567", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.20637", + "https://www.ncbi.nlm.nih.gov/pubmed/20506180" + ], "kit": null, "att_sites": [ "attR1", @@ -366969,7 +389180,10 @@ "plasmid_name": "TFORF3238", "sequence-type": "addgene-full", "addgene_id": "144714", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -367030,7 +389244,6 @@ "plasmid_name": "R777-E211 Hs.RAC3", "sequence-type": "depositor-full", "addgene_id": "70495", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -367058,7 +389271,10 @@ "plasmid_name": "pHAGE-FLT1-G886V", "sequence-type": "addgene-full", "addgene_id": "116394", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -367108,7 +389324,10 @@ "plasmid_name": "pAG303GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14326", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -367166,7 +389385,6 @@ "plasmid_name": "pAM-35s-CBL5-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102397", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -367199,7 +389417,10 @@ "plasmid_name": "pENTR1A DHFR.cHSF1", "sequence-type": "addgene-full", "addgene_id": "134737", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.28652", + "https://www.ncbi.nlm.nih.gov/pubmed/28949290" + ], "kit": null, "att_sites": [ "attL1", @@ -367225,7 +389446,10 @@ "plasmid_name": "TFORF3537", "sequence-type": "depositor-full", "addgene_id": "145013", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -367285,7 +389509,10 @@ "plasmid_name": "pDONR223_DNAJC12_WT", "sequence-type": "addgene-full", "addgene_id": "81974", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -367317,7 +389544,10 @@ "plasmid_name": "pDONR 221-XERICO (STOP)", "sequence-type": "addgene-full", "addgene_id": "118685", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attL1", @@ -367348,7 +389578,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP4_stop", "sequence-type": "addgene-full", "addgene_id": "168546", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -367377,7 +389610,10 @@ "plasmid_name": "TFORF3498", "sequence-type": "addgene-full", "addgene_id": "144974", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -367437,7 +389673,9 @@ "plasmid_name": "pDONR221-MAGI2(v2)", "sequence-type": "addgene-full", "addgene_id": "166183", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -367468,7 +389706,10 @@ "plasmid_name": "pHAGE-EGFR-E709A", "sequence-type": "addgene-full", "addgene_id": "116240", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -367522,7 +389763,6 @@ "plasmid_name": "R777-E342 Hs.TBK1-nostop", "sequence-type": "depositor-full", "addgene_id": "70626", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -367550,7 +389790,10 @@ "plasmid_name": "pDONR223_ARAF_p.D429A", "sequence-type": "addgene-full", "addgene_id": "82909", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -367579,7 +389822,10 @@ "plasmid_name": "pAG416GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14195", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -367641,7 +389887,6 @@ "plasmid_name": "pENTR-ABCC1_STOP", "sequence-type": "addgene-full", "addgene_id": "221423", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -367672,7 +389917,10 @@ "plasmid_name": "KZ301: pMVP (L3-L2) P2A-Blast + polyA", "sequence-type": "addgene-full", "addgene_id": "121779", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -367707,7 +389955,10 @@ "plasmid_name": "pCFJ420 - Peft-3::GFP::H2B (ubiquitous)", "sequence-type": "depositor-full", "addgene_id": "34877", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attB1", @@ -367738,7 +389989,10 @@ "plasmid_name": "pDONR223_ERBB2_p.R897Q", "sequence-type": "addgene-full", "addgene_id": "81714", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -367770,7 +390024,10 @@ "plasmid_name": "pSLIK_Zeo_3xflag_Luciferase", "sequence-type": "addgene-full", "addgene_id": "136533", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attB1", @@ -367836,7 +390093,10 @@ "plasmid_name": "pDONR221-SLC39A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161331", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -367867,7 +390127,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp1", "sequence-type": "addgene-full", "addgene_id": "168912", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -367896,7 +390159,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST NET1A V5 WT", "sequence-type": "depositor-full", "addgene_id": "69817", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "att_sites": [ "attB1", @@ -367946,7 +390212,10 @@ "plasmid_name": "pENTR-L4-pTF-L1R", "sequence-type": "depositor-full", "addgene_id": "45954", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "att_sites": [ "attL4", @@ -367978,7 +390247,10 @@ "plasmid_name": "TFORF3044", "sequence-type": "addgene-full", "addgene_id": "144520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -368038,7 +390310,10 @@ "plasmid_name": "CCNL2", "sequence-type": "addgene-full", "addgene_id": "155441", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -368081,7 +390356,10 @@ "plasmid_name": "LOC5567066 Gastrin-releasing peptide receptor", "sequence-type": "addgene-full", "addgene_id": "115372", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115372.addgene-full.gb" }, @@ -368090,7 +390368,10 @@ "plasmid_name": "907F1", "sequence-type": "addgene-full", "addgene_id": "160233", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160233.addgene-full.gb" }, @@ -368099,7 +390380,10 @@ "plasmid_name": "pAG424GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14368", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -368159,7 +390443,10 @@ "plasmid_name": "pGWB528", "sequence-type": "depositor-full", "addgene_id": "74870", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -368207,7 +390494,10 @@ "plasmid_name": "JL302: pMVP/Puro-DEST", "sequence-type": "addgene-full", "addgene_id": "121856", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -368250,7 +390540,10 @@ "plasmid_name": "pDONR223_CCDC90A_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82992", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -368279,7 +390572,6 @@ "plasmid_name": "R777-E057 Hs.EIF4EBP2", "sequence-type": "depositor-full", "addgene_id": "70341", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -368307,7 +390599,10 @@ "plasmid_name": "pGWB402-omega", "sequence-type": "depositor-full", "addgene_id": "74797", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -368356,7 +390651,6 @@ "plasmid_name": "pENTRY4_ Pi21", "sequence-type": "addgene-full", "addgene_id": "126904", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -368391,7 +390685,10 @@ "plasmid_name": "pYPQ145", "sequence-type": "depositor-full", "addgene_id": "69297", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL2", @@ -368423,7 +390720,10 @@ "plasmid_name": "pDONR221-SLC30A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161243", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -368454,7 +390754,10 @@ "plasmid_name": "5'-BirA-FLAG Sap30bp+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212093", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -368495,7 +390798,10 @@ "plasmid_name": "pCWXPG-UBI-MafA", "sequence-type": "addgene-full", "addgene_id": "114302", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "att_sites": [ "attB1", @@ -368553,7 +390859,10 @@ "plasmid_name": "pDONR223_NRAS_p.Y64D", "sequence-type": "addgene-full", "addgene_id": "81666", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -368585,7 +390894,10 @@ "plasmid_name": "SIN-cPPT-H1-sgHTT1-U6-sgGFP2-7SK-sgCas9-PGK-mCherry-WPRE", "sequence-type": "addgene-full", "addgene_id": "87919", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "att_sites": [ "attB1", @@ -368645,7 +390957,10 @@ "plasmid_name": "pME-loxP-mTagBFP2-stop-pA-loxP", "sequence-type": "depositor-full", "addgene_id": "75158", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -368683,7 +390998,10 @@ "plasmid_name": "TFORF2976", "sequence-type": "addgene-full", "addgene_id": "144452", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -368743,7 +391061,10 @@ "plasmid_name": "MiniCoopR U6:gRNA spred1, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118843", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -368787,7 +391108,10 @@ "plasmid_name": "pHAGE-ERBB2-G776S", "sequence-type": "addgene-full", "addgene_id": "116332", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -368841,7 +391165,10 @@ "plasmid_name": "TFORF3330", "sequence-type": "addgene-full", "addgene_id": "144806", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -368901,7 +391228,10 @@ "plasmid_name": "pcDNA3.2/NS4A", "sequence-type": "addgene-full", "addgene_id": "120826", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -368951,7 +391281,10 @@ "plasmid_name": "p3E-rab35b", "sequence-type": "addgene-full", "addgene_id": "109696", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -368982,7 +391315,10 @@ "plasmid_name": "pDONR221_SLC16A7", "sequence-type": "addgene-full", "addgene_id": "131947", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -369013,7 +391349,10 @@ "plasmid_name": "pdRBFC-B2-YN", "sequence-type": "addgene-full", "addgene_id": "74721", - "references": [], + "references": [ + "https://doi.org/10.1016/j.virol.2015.08.023", + "https://www.ncbi.nlm.nih.gov/pubmed/26351203" + ], "kit": null, "att_sites": [ "attB1", @@ -369055,7 +391394,10 @@ "plasmid_name": "pDONR223_SYCP1_p.E509K", "sequence-type": "addgene-full", "addgene_id": "81586", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -369087,7 +391429,10 @@ "plasmid_name": "pLenti-CMVSP6-nEGFP-SV40-PURO", "sequence-type": "addgene-full", "addgene_id": "138364", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attB1", @@ -369156,7 +391501,10 @@ "plasmid_name": "pEBTet-SNAP-CPAP", "sequence-type": "addgene-full", "addgene_id": "136815", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -369203,7 +391551,10 @@ "plasmid_name": "pDONR221 Dbp9", "sequence-type": "depositor-full", "addgene_id": "63743", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -369234,7 +391585,10 @@ "plasmid_name": "II701: pMVP (L1-L4) cTnT promoter", "sequence-type": "addgene-full", "addgene_id": "121690", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -369265,7 +391619,10 @@ "plasmid_name": "pDONR223_TP53_WT", "sequence-type": "addgene-full", "addgene_id": "82754", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -369295,7 +391652,10 @@ "plasmid_name": "pDONR221-SLC26A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161138", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -369326,7 +391686,6 @@ "plasmid_name": "R777-E287 Hs.ROS1", "sequence-type": "depositor-full", "addgene_id": "70571", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -369354,7 +391713,10 @@ "plasmid_name": "MLKP1delKASHec", "sequence-type": "addgene-full", "addgene_id": "130845", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attL1", @@ -369388,7 +391750,10 @@ "plasmid_name": "pDEST_6xUAS:lyn-tagRFPt", "sequence-type": "addgene-full", "addgene_id": "192354", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.82094", + "https://www.ncbi.nlm.nih.gov/pubmed/36398880" + ], "kit": null, "att_sites": [ "attB1", @@ -369437,7 +391802,10 @@ "plasmid_name": "TFORF3253", "sequence-type": "addgene-full", "addgene_id": "144729", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -369497,7 +391865,10 @@ "plasmid_name": "pENTR221 UBR5", "sequence-type": "depositor-full", "addgene_id": "81062", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "att_sites": [ "attL1", @@ -369528,7 +391899,10 @@ "plasmid_name": "pENT-L1-Kozak-HistoneH2B-L2", "sequence-type": "addgene-full", "addgene_id": "186357", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL1", @@ -369560,7 +391934,10 @@ "plasmid_name": "pKG-GW2-NUS1", "sequence-type": "addgene-full", "addgene_id": "203169", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "att_sites": [ "attB1", @@ -369591,7 +391968,10 @@ "plasmid_name": "pDONR221 CARD8", "sequence-type": "addgene-full", "addgene_id": "169962", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -369622,7 +392002,10 @@ "plasmid_name": "pCM1.36", "sequence-type": "depositor-full", "addgene_id": "17249", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -369654,7 +392037,10 @@ "plasmid_name": "pSLIK TT 3xFLAG Luciferase neo", "sequence-type": "addgene-full", "addgene_id": "98392", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "att_sites": [ "attB1", @@ -369723,7 +392109,10 @@ "plasmid_name": "pAB(EXPR-DS-HDAC5_HDAC3)", "sequence-type": "addgene-full", "addgene_id": "114399", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "att_sites": [ "attB1", @@ -369774,7 +392163,10 @@ "plasmid_name": "TFORF3473", "sequence-type": "addgene-full", "addgene_id": "144949", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -369834,7 +392226,10 @@ "plasmid_name": "IG510: pMVP (R4-R3) human PDX1", "sequence-type": "addgene-full", "addgene_id": "121744", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -369865,7 +392260,10 @@ "plasmid_name": "pDONR223_DAXX_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82934", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -369894,7 +392292,10 @@ "plasmid_name": "A1-LCD-9F+3Y", "sequence-type": "addgene-full", "addgene_id": "178663", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -369929,7 +392330,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.E203K", "sequence-type": "addgene-full", "addgene_id": "81729", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -369961,7 +392365,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF3b", "sequence-type": "depositor-full", "addgene_id": "168878", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -369990,7 +392397,6 @@ "plasmid_name": "pCFJ210", "sequence-type": "depositor-full", "addgene_id": "30538", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -370028,7 +392434,10 @@ "plasmid_name": "TFORF3110", "sequence-type": "addgene-full", "addgene_id": "144586", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -370088,7 +392497,6 @@ "plasmid_name": "pHAGE pGK LC3Flux (HaloTag7-mGFP-LC3-STOP)", "sequence-type": "addgene-full", "addgene_id": "215015", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -370154,7 +392562,10 @@ "plasmid_name": "pAAV_GWRev_Dest", "sequence-type": "addgene-full", "addgene_id": "86954", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1918241117", + "https://www.ncbi.nlm.nih.gov/pubmed/32300008" + ], "kit": null, "att_sites": [ "attR1" @@ -370196,7 +392607,10 @@ "plasmid_name": "pHAGE-AKT3-S370P", "sequence-type": "addgene-full", "addgene_id": "116106", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -370246,7 +392660,10 @@ "plasmid_name": "pLenti-PGK-EGFP-ALDH1A3-Neo", "sequence-type": "addgene-full", "addgene_id": "189744", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "att_sites": [ "attB1", @@ -370311,7 +392728,10 @@ "plasmid_name": "pDONR221-SLC6A19_STOP", "sequence-type": "addgene-full", "addgene_id": "161397", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -370342,7 +392762,10 @@ "plasmid_name": "p6325 pHAGE-P-CMVt-N-HA-GAW-HERC2-F1", "sequence-type": "addgene-full", "addgene_id": "100135", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -370394,7 +392817,10 @@ "plasmid_name": "pDONR223_C20orf72_WT", "sequence-type": "addgene-full", "addgene_id": "81806", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -370426,7 +392852,10 @@ "plasmid_name": "pDONR223_SMAD4_p.D537Y", "sequence-type": "addgene-full", "addgene_id": "81452", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -370458,7 +392887,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_V205F", "sequence-type": "addgene-full", "addgene_id": "221485", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -370518,7 +392950,9 @@ "plasmid_name": "nTALECD for_TUB4S351F_1397NC", "sequence-type": "addgene-full", "addgene_id": "193382", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "att_sites": [ "attB1", @@ -370565,7 +392999,10 @@ "plasmid_name": "pDONR221-SLC16A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161077", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -370596,7 +393033,10 @@ "plasmid_name": "plenti-CAG-IKZF1-V1-FLAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "107387", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -370657,7 +393097,10 @@ "plasmid_name": "pT3-EF1aH NICD1", "sequence-type": "addgene-full", "addgene_id": "86500", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI63212", + "https://www.ncbi.nlm.nih.gov/pubmed/22797301" + ], "kit": null, "att_sites": [ "attB1", @@ -370699,7 +393142,10 @@ "plasmid_name": "TFORF3190", "sequence-type": "addgene-full", "addgene_id": "144666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -370759,7 +393205,10 @@ "plasmid_name": "pDONR221_MFSD2A", "sequence-type": "addgene-full", "addgene_id": "131893", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -370790,7 +393239,10 @@ "plasmid_name": "pDONR221-SLC25A53_STOP", "sequence-type": "depositor-full", "addgene_id": "161209", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -370821,7 +393273,10 @@ "plasmid_name": "pMMK ENTR 2 hU6 HEK3 PegRNA", "sequence-type": "addgene-full", "addgene_id": "206277", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL3", @@ -370846,7 +393301,10 @@ "plasmid_name": "pCMU-PMr", "sequence-type": "depositor-full", "addgene_id": "61180", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -370892,7 +393350,10 @@ "plasmid_name": "pDONR223_PRDM1_WT", "sequence-type": "addgene-full", "addgene_id": "81761", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -370921,7 +393382,10 @@ "plasmid_name": "pDONR221-SLC43A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161344", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161344.addgene-full.gb" }, @@ -370930,7 +393394,10 @@ "plasmid_name": "pEntry_HCoV-229E-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168967", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -370959,7 +393426,9 @@ "plasmid_name": "pDONR221-STARD10", "sequence-type": "addgene-full", "addgene_id": "166216", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -370990,7 +393459,10 @@ "plasmid_name": "pBSDONR P1-P4", "sequence-type": "addgene-full", "addgene_id": "71744", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.110.171785", + "https://www.ncbi.nlm.nih.gov/pubmed/21343429" + ], "kit": null, "att_sites": [ "attP1", @@ -371035,7 +393507,10 @@ "plasmid_name": "pPV-EF1a-2xNLS-Cas7-Cas5-Cse1-iCA", "sequence-type": "addgene-full", "addgene_id": "134922", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-13226-x", + "https://www.ncbi.nlm.nih.gov/pubmed/31811138" + ], "kit": null, "att_sites": [ "attB1", @@ -371075,7 +393550,10 @@ "plasmid_name": "TFORF3079", "sequence-type": "addgene-full", "addgene_id": "144555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -371135,7 +393613,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF3a_nostop", "sequence-type": "addgene-full", "addgene_id": "168533", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -371164,7 +393645,10 @@ "plasmid_name": "pHAGE-EGFR-A859T", "sequence-type": "addgene-full", "addgene_id": "116235", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -371218,7 +393702,6 @@ "plasmid_name": "p663-UBC-V5-miniTurbo-V5-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158158", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -371284,7 +393767,10 @@ "plasmid_name": "TFORF3425", "sequence-type": "addgene-full", "addgene_id": "144901", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -371344,7 +393830,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 K295R", "sequence-type": "addgene-full", "addgene_id": "129302", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attB1", @@ -371388,7 +393877,10 @@ "plasmid_name": "pDONR223_ARSI_p.V373M", "sequence-type": "addgene-full", "addgene_id": "81481", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -371420,7 +393912,10 @@ "plasmid_name": "plenti-UbcP-IKZF2-V2-3xHA-pGK-Pur", "sequence-type": "addgene-full", "addgene_id": "69052", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -371480,7 +393975,10 @@ "plasmid_name": "IB801: pMAGIC (R4-R3) NLS-Sa dCas9-NLS-KRAB", "sequence-type": "addgene-full", "addgene_id": "121823", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -371515,7 +394013,10 @@ "plasmid_name": "pEPYCdKN0001", "sequence-type": "addgene-full", "addgene_id": "196148", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attB1", @@ -371555,7 +394056,10 @@ "plasmid_name": "JD404: pMVP (L3-L2) BioID2 + WPRE", "sequence-type": "addgene-full", "addgene_id": "121797", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -371590,7 +394094,10 @@ "plasmid_name": "Active Wnt7A-V5", "sequence-type": "depositor-full", "addgene_id": "43816", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -371638,7 +394145,10 @@ "plasmid_name": "pME-Kaede", "sequence-type": "addgene-full", "addgene_id": "132972", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "att_sites": [ "attL1", @@ -371670,7 +394180,9 @@ "plasmid_name": "pMpGWB121", "sequence-type": "depositor-full", "addgene_id": "68575", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -371716,7 +394228,10 @@ "plasmid_name": "SIN-cPPT-H1-sgHTT1-PGK-mCherry-WPRE", "sequence-type": "addgene-full", "addgene_id": "87885", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "att_sites": [ "attB1", @@ -371773,7 +394288,9 @@ "plasmid_name": "pPB-cT3G-cERP2-STRA8", "sequence-type": "addgene-full", "addgene_id": "222564", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -371819,7 +394336,10 @@ "plasmid_name": "pYPQ284-v1", "sequence-type": "addgene-full", "addgene_id": "138118", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -371851,7 +394371,9 @@ "plasmid_name": "pDRFLIP42", "sequence-type": "depositor-full", "addgene_id": "65518", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -371902,7 +394424,10 @@ "plasmid_name": "pDONR223_BRAF_p.G469V", "sequence-type": "addgene-full", "addgene_id": "82833", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -371932,7 +394457,6 @@ "plasmid_name": "pSCM167-Flag-hSFRP1", "sequence-type": "addgene-full", "addgene_id": "189538", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -371984,7 +394508,6 @@ "plasmid_name": "R777-E104 Hs.ICMT-nostop", "sequence-type": "depositor-full", "addgene_id": "70388", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -372012,7 +394535,6 @@ "plasmid_name": "MAPK8_BirA_Cterm", "sequence-type": "addgene-full", "addgene_id": "221519", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -372056,7 +394578,10 @@ "plasmid_name": "pDONR223_ZBTB24_p.M78I", "sequence-type": "addgene-full", "addgene_id": "82787", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -372085,7 +394610,10 @@ "plasmid_name": "p35S_EVDdi", "sequence-type": "addgene-full", "addgene_id": "167120", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.220723.117", + "https://www.ncbi.nlm.nih.gov/pubmed/28784835" + ], "kit": null, "att_sites": [ "attB1", @@ -372123,7 +394651,10 @@ "plasmid_name": "pFPL-Rg", "sequence-type": "depositor-full", "addgene_id": "61654", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-05-14-0144-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/25390188" + ], "kit": null, "att_sites": [ "attR1", @@ -372167,7 +394698,6 @@ "plasmid_name": "R777-E128 Hs.MAPK3-nostop", "sequence-type": "depositor-full", "addgene_id": "70412", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -372196,7 +394726,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mVenus-RfA", "sequence-type": "addgene-full", "addgene_id": "186384", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -372243,7 +394772,10 @@ "plasmid_name": "JD553", "sequence-type": "addgene-full", "addgene_id": "160392", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0703-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33046875" + ], "kit": null, "att_sites": [ "attL1", @@ -372274,7 +394806,10 @@ "plasmid_name": "pMuLE ENTR SV40 eGFP L3-L2", "sequence-type": "depositor-full", "addgene_id": "62145", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -372313,7 +394848,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp6", "sequence-type": "depositor-full", "addgene_id": "168955", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -372342,7 +394880,10 @@ "plasmid_name": "TFORF3005", "sequence-type": "addgene-full", "addgene_id": "144481", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -372402,7 +394943,10 @@ "plasmid_name": "pCM5.51", "sequence-type": "depositor-full", "addgene_id": "19382", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -372433,7 +394977,10 @@ "plasmid_name": "pDONR223_NRAS_WT", "sequence-type": "addgene-full", "addgene_id": "81901", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -372465,7 +395012,10 @@ "plasmid_name": "WT TXNIP", "sequence-type": "addgene-full", "addgene_id": "200088", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2023.106150", + "https://www.ncbi.nlm.nih.gov/pubmed/36890792" + ], "kit": null, "att_sites": [ "attB1", @@ -372517,7 +395067,10 @@ "plasmid_name": "pCFJ1258", "sequence-type": "depositor-full", "addgene_id": "44478", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "att_sites": [ "attR3", @@ -372551,7 +395104,10 @@ "plasmid_name": "pDONR221-SLC25A27_STOP", "sequence-type": "addgene-full", "addgene_id": "161170", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -372582,7 +395138,10 @@ "plasmid_name": "pDEST26 Ago2 S387A", "sequence-type": "depositor-full", "addgene_id": "59905", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2013.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/23603119" + ], "kit": null, "att_sites": [ "attB1", @@ -372631,7 +395190,10 @@ "plasmid_name": "pDONR223_XPO1_p.R553C", "sequence-type": "addgene-full", "addgene_id": "81555", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -372663,7 +395225,10 @@ "plasmid_name": "actc1b-mKate2-rab44", "sequence-type": "addgene-full", "addgene_id": "109645", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -372705,7 +395270,10 @@ "plasmid_name": "pT3EF5a-PIK3CA H1047R", "sequence-type": "addgene-full", "addgene_id": "180034", - "references": [], + "references": [ + "https://doi.org/10.1111/liv.13055", + "https://www.ncbi.nlm.nih.gov/pubmed/26716908" + ], "kit": null, "att_sites": [ "attL1", @@ -372730,7 +395298,10 @@ "plasmid_name": "TFORF3285", "sequence-type": "addgene-full", "addgene_id": "144761", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -372790,7 +395361,10 @@ "plasmid_name": "pDONR221_SLC25A40", "sequence-type": "addgene-full", "addgene_id": "131994", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -372821,7 +395395,10 @@ "plasmid_name": "pLVX-Flag-PolB(T304I)-Puro", "sequence-type": "addgene-full", "addgene_id": "177143", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkz293", + "https://www.ncbi.nlm.nih.gov/pubmed/31287140" + ], "kit": null, "att_sites": [ "attB1", @@ -372871,7 +395448,6 @@ "plasmid_name": "Hs.NRAS G12C", "sequence-type": "depositor-full", "addgene_id": "83175", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -372896,7 +395472,10 @@ "plasmid_name": "pDONR221-SLC3A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161379", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -372927,7 +395506,9 @@ "plasmid_name": "pME-myc-BirA (JDW 1210)", "sequence-type": "addgene-full", "addgene_id": "224509", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -372961,7 +395542,10 @@ "plasmid_name": "pENTR D-TOPO-C3_20", "sequence-type": "depositor-full", "addgene_id": "60266", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -372992,7 +395576,10 @@ "plasmid_name": "pENTR4_PRKRA", "sequence-type": "addgene-full", "addgene_id": "106110", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106110.addgene-full.gb" }, @@ -373001,7 +395588,10 @@ "plasmid_name": "TFORF3092", "sequence-type": "addgene-full", "addgene_id": "144568", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -373061,7 +395651,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-GSK3B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158165", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -373128,7 +395717,10 @@ "plasmid_name": "pHAGE-BRAF-V600M", "sequence-type": "addgene-full", "addgene_id": "116208", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -373183,7 +395775,10 @@ "plasmid_name": "TFORF3212", "sequence-type": "addgene-full", "addgene_id": "144688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -373243,7 +395838,10 @@ "plasmid_name": "pLX304_zeo_mmMavs_V5", "sequence-type": "addgene-full", "addgene_id": "160100", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -373302,7 +395900,10 @@ "plasmid_name": "IO102: pMVP (R4-R3) eGFP open", "sequence-type": "addgene-full", "addgene_id": "121731", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -373337,7 +395938,6 @@ "plasmid_name": "R777-E216 Hs.RALA-nostop", "sequence-type": "addgene-full", "addgene_id": "70500", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -373365,7 +395965,6 @@ "plasmid_name": "pGEX6P1-DEST-FLAG", "sequence-type": "addgene-full", "addgene_id": "119754", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -373410,7 +396009,10 @@ "plasmid_name": "pDONR223_HSD17B10_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82941", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -373439,7 +396041,10 @@ "plasmid_name": "pDONR223_IRF4_p.K123R", "sequence-type": "addgene-full", "addgene_id": "81427", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -373471,7 +396076,10 @@ "plasmid_name": "pcDNA3.2 TDP-43 YFP", "sequence-type": "addgene-full", "addgene_id": "84911", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09320", + "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + ], "kit": null, "att_sites": [ "attB1", @@ -373525,7 +396133,9 @@ "plasmid_name": "pDEST17-His10-Smt3-DDX5\u0394PrD(kf)-SNAP", "sequence-type": "addgene-full", "addgene_id": "166150", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attB1", @@ -373563,7 +396173,10 @@ "plasmid_name": "pHAGE-EGFR-R222C", "sequence-type": "addgene-full", "addgene_id": "116293", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -373617,7 +396230,10 @@ "plasmid_name": "pAC1822_pCR8-dCasRx", "sequence-type": "addgene-full", "addgene_id": "118656", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -373649,7 +396265,10 @@ "plasmid_name": "TFORF3137", "sequence-type": "addgene-full", "addgene_id": "144613", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -373709,7 +396328,10 @@ "plasmid_name": "p3E-rab5c-DN", "sequence-type": "addgene-full", "addgene_id": "109737", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -373740,7 +396362,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 NSP12_stop", "sequence-type": "addgene-full", "addgene_id": "168595", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -373769,7 +396394,10 @@ "plasmid_name": "GFP-ZMYND8", "sequence-type": "addgene-full", "addgene_id": "65401", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -373821,7 +396449,10 @@ "plasmid_name": "pHAGE-BRAF-L485F", "sequence-type": "addgene-full", "addgene_id": "116173", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -373876,7 +396507,10 @@ "plasmid_name": "pDONR223-ZNF397", "sequence-type": "addgene-full", "addgene_id": "88250", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -373905,7 +396539,10 @@ "plasmid_name": "p6330 pHAGE-P-CMVt-N-HA-GAW-HERC2-F6", "sequence-type": "addgene-full", "addgene_id": "100140", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -373957,7 +396594,10 @@ "plasmid_name": "pDONR223_POU2F2_WT", "sequence-type": "addgene-full", "addgene_id": "81873", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -373989,7 +396629,10 @@ "plasmid_name": "p{3P3-dsRed::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182176", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -374032,7 +396675,6 @@ "plasmid_name": "p667-UBC-COQ8A-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189885", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -374098,7 +396740,10 @@ "plasmid_name": "pYPQ288 (BoCas12a)", "sequence-type": "addgene-full", "addgene_id": "138125", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -374130,7 +396775,9 @@ "plasmid_name": "pPB-cT3G-cERP2-NELFE", "sequence-type": "addgene-full", "addgene_id": "222559", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -374176,7 +396823,6 @@ "plasmid_name": "pENTRY4_ HDT701", "sequence-type": "addgene-full", "addgene_id": "126898", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -374211,7 +396857,10 @@ "plasmid_name": "TFORF3397", "sequence-type": "addgene-full", "addgene_id": "144873", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -374271,7 +396920,10 @@ "plasmid_name": "pcDNA3_SP-AVPR2-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194371", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -374328,7 +396980,10 @@ "plasmid_name": "pHAGE-ERBB2-R678Q", "sequence-type": "addgene-full", "addgene_id": "116347", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -374382,7 +397037,10 @@ "plasmid_name": "pDONR221_SLC12A4", "sequence-type": "addgene-full", "addgene_id": "131932", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -374413,7 +397071,6 @@ "plasmid_name": "PSMC3_BirA_Nterm", "sequence-type": "addgene-full", "addgene_id": "221524", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -374457,7 +397114,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep63", "sequence-type": "addgene-full", "addgene_id": "136860", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -374503,7 +397163,10 @@ "plasmid_name": "pBSWHhc-Lam", "sequence-type": "addgene-full", "addgene_id": "133902", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attB1", @@ -374538,7 +397201,10 @@ "plasmid_name": "pAG423GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14245", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -374598,7 +397264,10 @@ "plasmid_name": "pDONR221-SLC38A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161236", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -374629,7 +397298,10 @@ "plasmid_name": "pDONR223_LCE1B_p.G102C", "sequence-type": "addgene-full", "addgene_id": "81613", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -374661,7 +397333,10 @@ "plasmid_name": "TFORF2951", "sequence-type": "addgene-full", "addgene_id": "144427", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -374721,7 +397396,10 @@ "plasmid_name": "actc1b-mKate2-FAPP1", "sequence-type": "addgene-full", "addgene_id": "109503", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -374763,7 +397441,9 @@ "plasmid_name": "pMpGWB231", "sequence-type": "depositor-full", "addgene_id": "68622", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -374812,7 +397492,10 @@ "plasmid_name": "pENTR-L3-HCN1miR-EGFP-L2", "sequence-type": "depositor-full", "addgene_id": "32585", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL2", @@ -374851,7 +397534,10 @@ "plasmid_name": "actc1b-mKate2-rab12", "sequence-type": "addgene-full", "addgene_id": "109598", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -374893,7 +397579,10 @@ "plasmid_name": "pLSLZ.D", "sequence-type": "depositor-full", "addgene_id": "51496", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attB1", @@ -374944,7 +397633,10 @@ "plasmid_name": "pMartini Gate B R2-R1", "sequence-type": "depositor-full", "addgene_id": "36434", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "att_sites": [ "attR1", @@ -374983,7 +397675,10 @@ "plasmid_name": "pDONR223_MAP4K3_p.R753Q", "sequence-type": "addgene-full", "addgene_id": "81688", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -375015,7 +397710,10 @@ "plasmid_name": "pDONR223_ERBB2IP_p.I979M", "sequence-type": "addgene-full", "addgene_id": "81568", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -375048,7 +397746,10 @@ "plasmid_name": "ECPK1D", "sequence-type": "addgene-full", "addgene_id": "130830", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attL1", @@ -375082,7 +397783,10 @@ "plasmid_name": "pDONR223_CGREF1_WT", "sequence-type": "addgene-full", "addgene_id": "82895", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -375111,7 +397815,10 @@ "plasmid_name": "p3E-rab21", "sequence-type": "addgene-full", "addgene_id": "109678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -375142,7 +397849,10 @@ "plasmid_name": "pSLIK 3xFLAG-DYNLL2 zeo", "sequence-type": "addgene-full", "addgene_id": "192321", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -375207,7 +397917,10 @@ "plasmid_name": "pYPQ230 (LbCpf1)", "sequence-type": "addgene-full", "addgene_id": "86210", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "att_sites": [ "attL1", @@ -375240,7 +397953,10 @@ "plasmid_name": "pMXs-Pax6", "sequence-type": "addgene-full", "addgene_id": "32932", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2011.07.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21852222" + ], "kit": null, "att_sites": [ "attB1", @@ -375268,7 +397984,10 @@ "plasmid_name": "pDONRG_P4-P1R:MUM4_0.3Pro_35S", "sequence-type": "addgene-full", "addgene_id": "128558", - "references": [], + "references": [ + "https://doi.org/10.1007/s11103-017-0631-7", + "https://www.ncbi.nlm.nih.gov/pubmed/28730525" + ], "kit": null, "att_sites": [ "attL4", @@ -375301,7 +398020,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-SCYL3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170606", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -375366,7 +398084,10 @@ "plasmid_name": "pLX311_TRIP13", "sequence-type": "addgene-full", "addgene_id": "184538", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-024-06140-6", + "https://www.ncbi.nlm.nih.gov/pubmed/38589567" + ], "kit": null, "file": "data/addgene_plasmids/184538.addgene-full.gb" }, @@ -375375,7 +398096,10 @@ "plasmid_name": "pDONR223_OR2G6_p.K236M", "sequence-type": "addgene-full", "addgene_id": "81342", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -375407,7 +398131,6 @@ "plasmid_name": "R777-E074 Hs.EXOC4-nostop", "sequence-type": "depositor-full", "addgene_id": "70358", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -375436,7 +398159,10 @@ "plasmid_name": "pHAGE-eGFP-OPTN S513A", "sequence-type": "addgene-full", "addgene_id": "175764", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -375489,7 +398215,10 @@ "plasmid_name": "pEF5-FRT-TagRFP-T-IFT88", "sequence-type": "depositor-full", "addgene_id": "61684", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.00654", + "https://www.ncbi.nlm.nih.gov/pubmed/23930224" + ], "kit": null, "file": "data/addgene_plasmids/61684.depositor-full.gb" }, @@ -375498,7 +398227,6 @@ "plasmid_name": "pcDNA3.1-Firefly-ccdB", "sequence-type": "addgene-full", "addgene_id": "87069", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -375552,7 +398280,10 @@ "plasmid_name": "pE6n", "sequence-type": "depositor-full", "addgene_id": "17460", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -375580,7 +398311,10 @@ "plasmid_name": "pENTR221-APP751", "sequence-type": "addgene-full", "addgene_id": "193772", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "att_sites": [ "attL1", @@ -375613,7 +398347,10 @@ "plasmid_name": "pDONR-P3P1r", "sequence-type": "addgene-full", "addgene_id": "141014", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attP1", @@ -375649,7 +398386,10 @@ "plasmid_name": "pGC163", "sequence-type": "depositor-full", "addgene_id": "19635", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -375692,7 +398432,10 @@ "plasmid_name": "pHAGE-PTCH1-T768I", "sequence-type": "addgene-full", "addgene_id": "116616", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -375746,7 +398489,10 @@ "plasmid_name": "pENTR221-PGK.Pro", "sequence-type": "addgene-full", "addgene_id": "79489", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL1", @@ -375779,7 +398525,10 @@ "plasmid_name": "pcDNA5FRT/TO-HOIP-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113494", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -375823,7 +398572,10 @@ "plasmid_name": "pAG426GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14371", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -375884,7 +398636,10 @@ "plasmid_name": "pGWB527", "sequence-type": "depositor-full", "addgene_id": "74869", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -375932,7 +398687,10 @@ "plasmid_name": "pDONR221_SLC39A14", "sequence-type": "addgene-full", "addgene_id": "132105", - "references": [], + "references": [ + "https://doi.org/10.1007/s10534-022-00474-6", + "https://www.ncbi.nlm.nih.gov/pubmed/36454509" + ], "kit": null, "att_sites": [ "attL1", @@ -375963,7 +398721,6 @@ "plasmid_name": "pLenti Lifeact-mTagBFP2 PuroR", "sequence-type": "addgene-full", "addgene_id": "101893", - "references": [], "kit": null, "file": "data/addgene_plasmids/101893.addgene-full.gb" }, @@ -375972,7 +398729,10 @@ "plasmid_name": "pYPQ210", "sequence-type": "addgene-full", "addgene_id": "109329", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12982", + "https://www.ncbi.nlm.nih.gov/pubmed/29972722" + ], "kit": null, "att_sites": [ "attR1", @@ -376019,7 +398779,10 @@ "plasmid_name": "pT2-cryR;cldn5bP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90158", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -376069,7 +398832,6 @@ "plasmid_name": "pAG416-GAL-TDP-43-M337V", "sequence-type": "addgene-full", "addgene_id": "181721", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -376122,7 +398884,10 @@ "plasmid_name": "pAG414GPD-VuCYP722C(pYL1070)", "sequence-type": "addgene-full", "addgene_id": "178293", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -376174,7 +398939,10 @@ "plasmid_name": "pEn-C1.1", "sequence-type": "depositor-full", "addgene_id": "61479", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12704", + "https://www.ncbi.nlm.nih.gov/pubmed/25327456" + ], "kit": null, "att_sites": [ "attB2", @@ -376216,7 +398984,10 @@ "plasmid_name": "pMDJ12 - pEXP[Peft-3 | mNeonGreen (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159799", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -376254,7 +399025,10 @@ "plasmid_name": "pDONR223_ATF4_WT", "sequence-type": "addgene-full", "addgene_id": "82190", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -376284,7 +399058,10 @@ "plasmid_name": "pBoPyV3-S22", "sequence-type": "depositor-full", "addgene_id": "62368", - "references": [], + "references": [ + "https://doi.org/10.1099/vir.0.000033", + "https://www.ncbi.nlm.nih.gov/pubmed/25568187" + ], "kit": null, "att_sites": [ "attL1", @@ -376309,7 +399086,10 @@ "plasmid_name": "pDEST-FRT/T0-Flag-PALB2", "sequence-type": "depositor-full", "addgene_id": "71114", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1", @@ -376352,7 +399132,10 @@ "plasmid_name": "pHAGE-MAP3K4", "sequence-type": "addgene-full", "addgene_id": "116759", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -376408,7 +399191,6 @@ "plasmid_name": "R777-E032 Hs.CYTH2-nostop", "sequence-type": "depositor-full", "addgene_id": "70316", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -376436,7 +399218,10 @@ "plasmid_name": "pYPQ266B", "sequence-type": "addgene-full", "addgene_id": "149555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2020.100101", + "https://www.ncbi.nlm.nih.gov/pubmed/33898973" + ], "kit": null, "att_sites": [ "attL1", @@ -376471,7 +399256,10 @@ "plasmid_name": "pCAG/ATP10B(E210Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209247", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209247.addgene-full.gb" }, @@ -376480,7 +399268,10 @@ "plasmid_name": "pSC51", "sequence-type": "addgene-full", "addgene_id": "104825", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "att_sites": [ "attB1", @@ -376524,7 +399315,6 @@ "plasmid_name": "IDG_GABRR1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161628", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -376583,7 +399373,10 @@ "plasmid_name": "pGWB441", "sequence-type": "depositor-full", "addgene_id": "74827", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -376636,7 +399429,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-eGFP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135263", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -376705,7 +399497,10 @@ "plasmid_name": "pDONR223_PIK3R3_WT", "sequence-type": "addgene-full", "addgene_id": "82044", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -376734,7 +399529,10 @@ "plasmid_name": "pDEST40-2XHA-Src-Y530EEI", "sequence-type": "addgene-full", "addgene_id": "140322", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -376786,7 +399584,6 @@ "plasmid_name": "pAG426GAL-HCoV-NL63_PLP2", "sequence-type": "addgene-full", "addgene_id": "203502", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -376840,7 +399637,10 @@ "plasmid_name": "pRU52", "sequence-type": "addgene-full", "addgene_id": "167678", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -376889,7 +399689,10 @@ "plasmid_name": "pDONR223_LCE1B_p.S42F", "sequence-type": "addgene-full", "addgene_id": "81296", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -376921,7 +399724,10 @@ "plasmid_name": "pHAGE-KRAS-A146V", "sequence-type": "addgene-full", "addgene_id": "116422", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -376972,7 +399778,10 @@ "plasmid_name": "pDONR223-ZNF692", "sequence-type": "addgene-full", "addgene_id": "88701", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -377001,7 +399810,10 @@ "plasmid_name": "Tol2-UAS-Dendra2", "sequence-type": "addgene-full", "addgene_id": "97145", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "file": "data/addgene_plasmids/97145.addgene-full.gb" }, @@ -377010,7 +399822,10 @@ "plasmid_name": "MAC_N_PSA1", "sequence-type": "addgene-full", "addgene_id": "111690", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -377055,7 +399870,6 @@ "plasmid_name": "pENTR_Hu_BIRC5(WT)", "sequence-type": "addgene-full", "addgene_id": "136351", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -377086,7 +399900,10 @@ "plasmid_name": "pBoPyV1-S22", "sequence-type": "depositor-full", "addgene_id": "62326", - "references": [], + "references": [ + "https://doi.org/10.1099/vir.0.000033", + "https://www.ncbi.nlm.nih.gov/pubmed/25568187" + ], "kit": null, "att_sites": [ "attL1", @@ -377111,7 +399928,10 @@ "plasmid_name": "pDL8", "sequence-type": "addgene-full", "addgene_id": "175904", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -377142,7 +399962,10 @@ "plasmid_name": "pDONR221_SLC6A20", "sequence-type": "addgene-full", "addgene_id": "132243", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -377173,7 +399996,10 @@ "plasmid_name": "pUASp-FMW-attB-AthHen1", "sequence-type": "addgene-full", "addgene_id": "104957", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4610", + "https://www.ncbi.nlm.nih.gov/pubmed/29481550" + ], "kit": null, "att_sites": [ "attB1", @@ -377216,7 +400042,10 @@ "plasmid_name": "pJRA101", "sequence-type": "addgene-full", "addgene_id": "209335", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -377260,7 +400089,10 @@ "plasmid_name": "pENTR-R4R3-mEGFP-C", "sequence-type": "addgene-full", "addgene_id": "113749", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -377298,7 +400130,10 @@ "plasmid_name": "pDONR223_JAZF1_WT", "sequence-type": "addgene-full", "addgene_id": "82136", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -377327,7 +400162,10 @@ "plasmid_name": "MAC_N_SOX10", "sequence-type": "addgene-full", "addgene_id": "167791", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -377372,7 +400210,6 @@ "plasmid_name": "g5s pD42", "sequence-type": "addgene-full", "addgene_id": "117452", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -377411,7 +400248,10 @@ "plasmid_name": "ABCG1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176944", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -377463,7 +400303,10 @@ "plasmid_name": "pENTR223-BXLF2", "sequence-type": "addgene-full", "addgene_id": "195830", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -377492,7 +400335,10 @@ "plasmid_name": "pENTR223-BZLF2", "sequence-type": "addgene-full", "addgene_id": "195784", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -377521,7 +400367,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-CALCOCO2", "sequence-type": "addgene-full", "addgene_id": "175759", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -377572,7 +400421,6 @@ "plasmid_name": "R777-E242 Hs.RASGRF2-nostop", "sequence-type": "depositor-full", "addgene_id": "70526", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -377600,7 +400448,10 @@ "plasmid_name": "pAG424GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14295", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -377663,7 +400514,10 @@ "plasmid_name": "C512-E34: attB5r-iRFP670-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162947", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -377691,7 +400545,10 @@ "plasmid_name": "pInducer20_SLC38A2_N82A", "sequence-type": "addgene-full", "addgene_id": "156183", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0959", + "https://www.ncbi.nlm.nih.gov/pubmed/32341021" + ], "kit": null, "att_sites": [ "attB1", @@ -377743,7 +400600,6 @@ "plasmid_name": "TCF4 - D424N in pENTR", "sequence-type": "addgene-full", "addgene_id": "216571", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -377773,7 +400629,10 @@ "plasmid_name": "pUC-DEST-cjSTELLA-mCerulean-PuroTK", "sequence-type": "addgene-full", "addgene_id": "141029", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attB1", @@ -377825,7 +400684,10 @@ "plasmid_name": "pDEST-Myc-FBW7 Delta WD40 (-2 to 7)", "sequence-type": "addgene-full", "addgene_id": "197454", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "att_sites": [ "attB1", @@ -377877,7 +400739,10 @@ "plasmid_name": "pT3-myr-AKT-HA", "sequence-type": "addgene-full", "addgene_id": "31789", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2010.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/21147110" + ], "kit": null, "att_sites": [ "attB1", @@ -377924,7 +400789,10 @@ "plasmid_name": "pDONR221_SLC2A14", "sequence-type": "addgene-full", "addgene_id": "132138", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -377955,7 +400823,10 @@ "plasmid_name": "pCMB-PDESr", "sequence-type": "depositor-full", "addgene_id": "61207", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61207.depositor-full.gb" }, @@ -377964,7 +400835,10 @@ "plasmid_name": "pDONR221-NIPA2_STOP", "sequence-type": "addgene-full", "addgene_id": "161421", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -377995,7 +400869,10 @@ "plasmid_name": "Flag-HA-ATXN3", "sequence-type": "addgene-full", "addgene_id": "22538", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -378040,7 +400917,10 @@ "plasmid_name": "pLX311 MCL1", "sequence-type": "addgene-full", "addgene_id": "117729", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117729.addgene-full.gb" }, @@ -378049,7 +400929,10 @@ "plasmid_name": "pT2-cryR;sheP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90165", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -378099,7 +400982,6 @@ "plasmid_name": "pAG416GAL10-NWV_3CL", "sequence-type": "addgene-full", "addgene_id": "203470", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -378148,7 +401030,10 @@ "plasmid_name": "pMDJ21 - pEXP [Psmu-1 | eFlp recombinase (PATCs) | smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159810", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -378181,7 +401066,10 @@ "plasmid_name": "800 pME-Bozozok", "sequence-type": "depositor-full", "addgene_id": "49008", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "att_sites": [ "attL1", @@ -378212,7 +401100,10 @@ "plasmid_name": "pMuLE_ENTR_TOP-iRFP_L5-L4", "sequence-type": "addgene-full", "addgene_id": "113866", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "att_sites": [ "attL4", @@ -378245,7 +401136,10 @@ "plasmid_name": "pHAGE-PIK3CB-A1048V", "sequence-type": "addgene-full", "addgene_id": "116550", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -378300,7 +401194,10 @@ "plasmid_name": "pDONR223-PRKAR1A", "sequence-type": "addgene-full", "addgene_id": "23741", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -378332,7 +401229,10 @@ "plasmid_name": "pLenti_CMV_Puro_SFB_GNB1L_WD 4 deletion", "sequence-type": "addgene-full", "addgene_id": "224385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.07.004", + "https://www.ncbi.nlm.nih.gov/pubmed/37541219" + ], "kit": null, "att_sites": [ "attB1", @@ -378397,7 +401297,10 @@ "plasmid_name": "pCM1.53", "sequence-type": "depositor-full", "addgene_id": "17250", - "references": [], + "references": [ + "https://doi.org/10.1895/wormbook.1.148.1", + "https://www.ncbi.nlm.nih.gov/pubmed/20169625" + ], "kit": null, "att_sites": [ "attL1", @@ -378422,7 +401325,10 @@ "plasmid_name": "pHAGE-MRPS31", "sequence-type": "addgene-full", "addgene_id": "116764", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -378472,7 +401378,10 @@ "plasmid_name": "pGMCtN-TSC10M1-sspB", "sequence-type": "depositor-full", "addgene_id": "49521", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "att_sites": [ "attB1", @@ -378499,7 +401408,10 @@ "plasmid_name": "pGWB501NL3F10H", "sequence-type": "addgene-full", "addgene_id": "141286", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0454-4", + "https://www.ncbi.nlm.nih.gov/pubmed/31316580" + ], "kit": null, "att_sites": [ "attR1", @@ -378547,7 +401459,6 @@ "plasmid_name": "R777-E284 Hs.ROCK1-nostop", "sequence-type": "depositor-full", "addgene_id": "70568", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -378575,7 +401486,10 @@ "plasmid_name": "pHAGE-PIK3CA-E545G", "sequence-type": "addgene-full", "addgene_id": "116484", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -378630,7 +401544,10 @@ "plasmid_name": "pSC44", "sequence-type": "addgene-full", "addgene_id": "104818", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104818.addgene-full.gb" }, @@ -378639,7 +401556,6 @@ "plasmid_name": "IDG_FAM26E_OE_1", "sequence-type": "addgene-full", "addgene_id": "161615", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -378698,7 +401614,10 @@ "plasmid_name": "pCR8/GW_TOPO_Cdk12_Untagged", "sequence-type": "addgene-full", "addgene_id": "127176", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0758-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30487607" + ], "kit": null, "att_sites": [ "attL1", @@ -378727,7 +401646,10 @@ "plasmid_name": "pLenti-Zyxin-F (aa373-564)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187698", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "att_sites": [ "attB1", @@ -378790,7 +401712,10 @@ "plasmid_name": "pXL-CAG-mBirA272-NRX3b D137A", "sequence-type": "depositor-full", "addgene_id": "43922", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0052823", + "https://www.ncbi.nlm.nih.gov/pubmed/23457442" + ], "kit": null, "att_sites": [ "attB1", @@ -378835,7 +401760,10 @@ "plasmid_name": "pYPQ230-E795L", "sequence-type": "addgene-full", "addgene_id": "176890", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2022.780238", + "https://www.ncbi.nlm.nih.gov/pubmed/35174354" + ], "kit": null, "att_sites": [ "attL1", @@ -378867,7 +401795,9 @@ "plasmid_name": "p3E-FRB(PLF)-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82597", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -378899,7 +401829,10 @@ "plasmid_name": "pRL8", "sequence-type": "depositor-full", "addgene_id": "24980", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1454", + "https://www.ncbi.nlm.nih.gov/pubmed/20418868" + ], "kit": null, "att_sites": [ "attL1", @@ -378931,7 +401864,10 @@ "plasmid_name": "pWZL Neo Myr Flag CDK2", "sequence-type": "addgene-full", "addgene_id": "20447", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20447.addgene-full.gb" }, @@ -378940,7 +401876,10 @@ "plasmid_name": "pDONR-IAA7_no stop", "sequence-type": "depositor-full", "addgene_id": "83872", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -378971,7 +401910,10 @@ "plasmid_name": "pDEST-CMV GFP-LC3B G120", "sequence-type": "addgene-full", "addgene_id": "123116", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -379024,7 +401966,10 @@ "plasmid_name": "pDONR221_SLC30A5", "sequence-type": "addgene-full", "addgene_id": "132077", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -379055,7 +402000,10 @@ "plasmid_name": "pZA14", "sequence-type": "addgene-full", "addgene_id": "158492", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -379085,7 +402033,10 @@ "plasmid_name": "MEN2B-V5", "sequence-type": "addgene-full", "addgene_id": "139630", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -379136,7 +402087,10 @@ "plasmid_name": "C122-E11: eGFP", "sequence-type": "addgene-full", "addgene_id": "162893", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -379173,7 +402127,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term WRAP53", "sequence-type": "addgene-full", "addgene_id": "187578", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -379217,7 +402174,10 @@ "plasmid_name": "pKG-GW1-hCIT", "sequence-type": "addgene-full", "addgene_id": "203166", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "att_sites": [ "attB1", @@ -379247,7 +402207,10 @@ "plasmid_name": "pAB(EXPR-PYL-DNMT1-NEO)", "sequence-type": "addgene-full", "addgene_id": "114396", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "att_sites": [ "attB1", @@ -379301,7 +402264,10 @@ "plasmid_name": "pLEX307 GFP-Kif26b-C", "sequence-type": "addgene-full", "addgene_id": "118483", - "references": [], + "references": [ + "https://doi.org/10.3390/genes9040196", + "https://www.ncbi.nlm.nih.gov/pubmed/29621187" + ], "kit": null, "att_sites": [ "attB1", @@ -379362,7 +402328,10 @@ "plasmid_name": "pENT-L1-Kozak-NLSlacZ-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186358", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL1", @@ -379394,7 +402363,6 @@ "plasmid_name": "pCW57.1_V5_BirA*_FLAG_Nt", "sequence-type": "addgene-full", "addgene_id": "194070", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -379453,7 +402421,10 @@ "plasmid_name": "TFORF3416", "sequence-type": "addgene-full", "addgene_id": "144892", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -379513,7 +402484,10 @@ "plasmid_name": "TFORF3250", "sequence-type": "addgene-full", "addgene_id": "144726", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -379573,7 +402547,10 @@ "plasmid_name": "pDON223 NSP5 K90R", "sequence-type": "addgene-full", "addgene_id": "180073", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -379602,7 +402579,10 @@ "plasmid_name": "actc1b-mKate2-rab15", "sequence-type": "addgene-full", "addgene_id": "109602", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -379644,7 +402624,10 @@ "plasmid_name": "pDONR223_WBSCR17_p.A398V", "sequence-type": "addgene-full", "addgene_id": "81512", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -379676,7 +402659,10 @@ "plasmid_name": "pDONR223 LC3B Q116P G120", "sequence-type": "addgene-full", "addgene_id": "129291", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attL1", @@ -379705,7 +402691,10 @@ "plasmid_name": "pDONR221-SLC25A46_STOP", "sequence-type": "addgene-full", "addgene_id": "161137", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -379736,7 +402725,10 @@ "plasmid_name": "TFORF3546", "sequence-type": "depositor-full", "addgene_id": "145022", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -379796,7 +402788,10 @@ "plasmid_name": "pDONR223_STAG2_p.R252Q", "sequence-type": "addgene-full", "addgene_id": "81589", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -379828,7 +402823,10 @@ "plasmid_name": "pEGFP\u2010RNASEH2A", "sequence-type": "addgene-full", "addgene_id": "108700", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkq980", + "https://www.ncbi.nlm.nih.gov/pubmed/21245041" + ], "kit": null, "att_sites": [ "attB1", @@ -379870,7 +402868,10 @@ "plasmid_name": "pCMU-TGNVHAr", "sequence-type": "depositor-full", "addgene_id": "61178", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -379916,7 +402917,10 @@ "plasmid_name": "TFORF3333", "sequence-type": "addgene-full", "addgene_id": "144809", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -379976,7 +402980,10 @@ "plasmid_name": "pDONR221_SLC17A6", "sequence-type": "addgene-full", "addgene_id": "131948", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131948.addgene-full.gb" }, @@ -379985,7 +402992,10 @@ "plasmid_name": "p3E-rab38a", "sequence-type": "addgene-full", "addgene_id": "109699", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -380016,7 +403026,10 @@ "plasmid_name": "pcDNA3.2/NS5-Af-mut", "sequence-type": "addgene-full", "addgene_id": "120829", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -380067,7 +403080,10 @@ "plasmid_name": "pCM1.108", "sequence-type": "depositor-full", "addgene_id": "21382", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL4", @@ -380098,7 +403114,10 @@ "plasmid_name": "p3E-RhoAb", "sequence-type": "addgene-full", "addgene_id": "109579", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -380129,7 +403148,10 @@ "plasmid_name": "pAG423GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14317", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -380192,7 +403214,6 @@ "plasmid_name": "pCLX-UBI-VenusN", "sequence-type": "depositor-full", "addgene_id": "27247", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -380247,7 +403268,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.C121S", "sequence-type": "addgene-full", "addgene_id": "81669", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -380279,7 +403303,10 @@ "plasmid_name": "pLenti CMV MCL1 Puro", "sequence-type": "addgene-full", "addgene_id": "140746", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.107845", + "https://www.ncbi.nlm.nih.gov/pubmed/32640215" + ], "kit": null, "att_sites": [ "attB1", @@ -380341,7 +403368,10 @@ "plasmid_name": "plenti-CAG-IKZF3-FLAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "107388", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -380402,7 +403432,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-DYRK4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158184", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -380468,7 +403497,10 @@ "plasmid_name": "TFORF3193", "sequence-type": "addgene-full", "addgene_id": "144669", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -380528,7 +403560,10 @@ "plasmid_name": "pDONR221-SLC17A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161078", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -380560,7 +403595,10 @@ "plasmid_name": "JN202: pMVP/SB/Blast-DEST", "sequence-type": "addgene-full", "addgene_id": "121864", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -380600,7 +403638,10 @@ "plasmid_name": "Kras (G12V)-pcw107", "sequence-type": "addgene-full", "addgene_id": "64602", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attB1", @@ -380659,7 +403700,6 @@ "plasmid_name": "R777-E334 Hs.SPRY4-nostop", "sequence-type": "depositor-full", "addgene_id": "70617", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -380687,7 +403727,10 @@ "plasmid_name": "pDONR221-SLC7A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161398", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -380718,7 +403761,10 @@ "plasmid_name": "pDONR223_ILKAP_WT", "sequence-type": "addgene-full", "addgene_id": "81809", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -380750,7 +403796,6 @@ "plasmid_name": "R777-E317 Hs.SOS1", "sequence-type": "addgene-full", "addgene_id": "70601", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -380778,7 +403823,10 @@ "plasmid_name": "pMOS019: ClopHensorN chloride sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163048", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -380845,7 +403893,10 @@ "plasmid_name": "TFORF3113", "sequence-type": "addgene-full", "addgene_id": "144589", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -380905,7 +403956,10 @@ "plasmid_name": "pHAGE-ALK-G875R", "sequence-type": "addgene-full", "addgene_id": "116109", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -380959,7 +404013,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP2_nostop", "sequence-type": "addgene-full", "addgene_id": "149305", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -380988,7 +404045,6 @@ "plasmid_name": "R777-E086 Hs.FGFR2-nostop", "sequence-type": "depositor-full", "addgene_id": "70370", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -381017,7 +404073,10 @@ "plasmid_name": "TFORF3036", "sequence-type": "addgene-full", "addgene_id": "144512", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -381078,7 +404137,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp14", "sequence-type": "addgene-full", "addgene_id": "168920", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -381107,7 +404169,10 @@ "plasmid_name": "pHAGE-BRAF-Q530K", "sequence-type": "addgene-full", "addgene_id": "116192", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -381162,7 +404227,10 @@ "plasmid_name": "pDONR221-SLC30A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161303", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -381193,7 +404261,10 @@ "plasmid_name": "pDONR223_ERBB2_WT", "sequence-type": "addgene-full", "addgene_id": "81892", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -381225,7 +404296,10 @@ "plasmid_name": "pSGE_764_4xUAS_DOS_hkCP", "sequence-type": "depositor-full", "addgene_id": "71172", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -381257,7 +404331,10 @@ "plasmid_name": "pDONR223_IDH1_p.R132C", "sequence-type": "addgene-full", "addgene_id": "81726", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -381289,7 +404366,10 @@ "plasmid_name": "pENTR L1-5XQUAS-R5", "sequence-type": "depositor-full", "addgene_id": "32303", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attL1", @@ -381322,7 +404402,10 @@ "plasmid_name": "pDONR221-eGFP_KDEL", "sequence-type": "addgene-full", "addgene_id": "221411", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221411.addgene-full.gb" }, @@ -381331,7 +404414,10 @@ "plasmid_name": "pAG414GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14359", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -381391,7 +404477,10 @@ "plasmid_name": "pBABEpuro-gateway", "sequence-type": "addgene-full", "addgene_id": "51070", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1203201109", + "https://www.ncbi.nlm.nih.gov/pubmed/22908275" + ], "kit": null, "att_sites": [ "attR1", @@ -381428,7 +404517,10 @@ "plasmid_name": "PLRG1", "sequence-type": "addgene-full", "addgene_id": "155827", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -381471,7 +404563,10 @@ "plasmid_name": "pHAGE-EGFR-L861Q", "sequence-type": "addgene-full", "addgene_id": "116272", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -381525,7 +404620,10 @@ "plasmid_name": "TFORF3470", "sequence-type": "addgene-full", "addgene_id": "144946", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -381585,7 +404683,10 @@ "plasmid_name": "NSUN2", "sequence-type": "addgene-full", "addgene_id": "155793", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -381628,7 +404729,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP4", "sequence-type": "addgene-full", "addgene_id": "154403", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -381658,7 +404762,10 @@ "plasmid_name": "pENT-L3-pSnail-L5", "sequence-type": "addgene-full", "addgene_id": "186365", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL3", @@ -381689,7 +404796,10 @@ "plasmid_name": "V5-W279A-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192086", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "att_sites": [ "attB1", @@ -381740,7 +404850,10 @@ "plasmid_name": "pLenti CMV Hygro DHFR.cHSF1", "sequence-type": "addgene-full", "addgene_id": "134738", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.28652", + "https://www.ncbi.nlm.nih.gov/pubmed/28949290" + ], "kit": null, "att_sites": [ "attB1", @@ -381802,7 +404915,10 @@ "plasmid_name": "MAC_N_CCDC22", "sequence-type": "addgene-full", "addgene_id": "209685", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -381847,7 +404963,6 @@ "plasmid_name": "pAM-35s-CBL6-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102398", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -381880,7 +404995,10 @@ "plasmid_name": "pENTR-ZmIAA28", "sequence-type": "addgene-full", "addgene_id": "188440", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -381911,7 +405029,10 @@ "plasmid_name": "pLX304_zeo_empty", "sequence-type": "addgene-full", "addgene_id": "160093", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -381970,7 +405091,10 @@ "plasmid_name": "pDONR223_DOK1_p.S460I", "sequence-type": "addgene-full", "addgene_id": "82766", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -381999,7 +405123,10 @@ "plasmid_name": "tetO-Myocd", "sequence-type": "addgene-full", "addgene_id": "46033", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "att_sites": [ "attB1", @@ -382061,7 +405188,9 @@ "plasmid_name": "pGem-nHyPer:cAPX", "sequence-type": "addgene-full", "addgene_id": "84736", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "att_sites": [ "attB1", @@ -382106,7 +405235,10 @@ "plasmid_name": "pDONR221-SLC23A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161191", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -382137,7 +405269,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.G367V", "sequence-type": "addgene-full", "addgene_id": "82849", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -382167,7 +405302,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hSFRP1-VF", "sequence-type": "addgene-full", "addgene_id": "189542", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -382221,7 +405355,10 @@ "plasmid_name": "pEBTet-SNAP-Sfi1", "sequence-type": "addgene-full", "addgene_id": "136793", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -382267,7 +405404,10 @@ "plasmid_name": "pEBTet-SNAP-Cep78", "sequence-type": "addgene-full", "addgene_id": "136827", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -382313,7 +405453,10 @@ "plasmid_name": "p5E-CMVSP6", "sequence-type": "addgene-full", "addgene_id": "138356", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attL4", @@ -382347,7 +405490,10 @@ "plasmid_name": "pFRT/TO/FLAGHA-SCAF8", "sequence-type": "addgene-full", "addgene_id": "122470", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "att_sites": [ "attB1", @@ -382392,7 +405538,10 @@ "plasmid_name": "pDONR221_SLC22A12", "sequence-type": "addgene-full", "addgene_id": "131975", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -382423,7 +405572,10 @@ "plasmid_name": "TFORF3304", "sequence-type": "addgene-full", "addgene_id": "144780", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -382483,7 +405635,10 @@ "plasmid_name": "TFORF3358", "sequence-type": "addgene-full", "addgene_id": "144834", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -382543,7 +405698,10 @@ "plasmid_name": "pDONR223-ZNF473", "sequence-type": "addgene-full", "addgene_id": "88023", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -382572,7 +405730,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168852", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168852.addgene-full.gb" }, @@ -382581,7 +405742,10 @@ "plasmid_name": "p3E-DysF", "sequence-type": "addgene-full", "addgene_id": "109544", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -382613,7 +405777,10 @@ "plasmid_name": "TFORF2984", "sequence-type": "addgene-full", "addgene_id": "144460", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -382673,7 +405840,9 @@ "plasmid_name": "pMpGWB429", "sequence-type": "depositor-full", "addgene_id": "68694", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -382723,7 +405892,6 @@ "plasmid_name": "p667-UBC-STKLD1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189916", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -382788,7 +405956,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12S", "sequence-type": "addgene-full", "addgene_id": "81654", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -382821,7 +405992,6 @@ "plasmid_name": "R777-E256 Hs.RASSF2-nostop", "sequence-type": "depositor-full", "addgene_id": "70540", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -382849,7 +406019,10 @@ "plasmid_name": "pDONR221-SLC39A14_STOP", "sequence-type": "addgene-full", "addgene_id": "161271", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -382880,7 +406053,10 @@ "plasmid_name": "TFORF3178", "sequence-type": "addgene-full", "addgene_id": "144654", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -382940,7 +406116,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp7", "sequence-type": "depositor-full", "addgene_id": "168849", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -382969,7 +406148,10 @@ "plasmid_name": "pDONR221-SLC2A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161045", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -383000,7 +406182,10 @@ "plasmid_name": "KK402: pMVP/Zeo-DEST", "sequence-type": "addgene-full", "addgene_id": "121859", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -383043,7 +406228,10 @@ "plasmid_name": "pDONR223_TRAF3_p.D463N", "sequence-type": "addgene-full", "addgene_id": "81460", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -383075,7 +406263,10 @@ "plasmid_name": "pDONR223_GLIPR1_WT", "sequence-type": "addgene-full", "addgene_id": "81780", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -383107,7 +406298,10 @@ "plasmid_name": "pDONR223_SGK1_WT", "sequence-type": "addgene-full", "addgene_id": "81834", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -383119,7 +406313,10 @@ "plasmid_name": "pHAGE-BRAF-A762V", "sequence-type": "addgene-full", "addgene_id": "116134", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -383174,7 +406371,10 @@ "plasmid_name": "pAC90-pmax-DEST", "sequence-type": "depositor-full", "addgene_id": "48222", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attR1", @@ -383208,7 +406408,10 @@ "plasmid_name": "actc1b-mKate2-GPI-pA", "sequence-type": "addgene-full", "addgene_id": "109490", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109490.addgene-full.gb" }, @@ -383217,7 +406420,10 @@ "plasmid_name": "pMOS016E: Entry vector for: roGFP2-Orp1 H2O2 oxidation sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163075", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -383252,7 +406458,6 @@ "plasmid_name": "R777-E010 Hs.ARAF-nostop", "sequence-type": "depositor-full", "addgene_id": "70294", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -383280,7 +406485,10 @@ "plasmid_name": "pDEST17-cDAXX-0SB", "sequence-type": "addgene-full", "addgene_id": "169730", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "att_sites": [ "attB1", @@ -383315,7 +406523,10 @@ "plasmid_name": "pDONR223_EGFR_p.L858R", "sequence-type": "addgene-full", "addgene_id": "82906", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -383345,7 +406556,10 @@ "plasmid_name": "LA201: pMVP (L3-L2) P2A-eCFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121776", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -383384,7 +406598,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP7_stop", "sequence-type": "addgene-full", "addgene_id": "168549", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -383413,7 +406630,10 @@ "plasmid_name": "pAFMW-Nbr[R272A]", "sequence-type": "addgene-full", "addgene_id": "188594", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -383443,7 +406663,10 @@ "plasmid_name": "pSAM2_mCherry_Tbx20", "sequence-type": "addgene-full", "addgene_id": "72697", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -383505,7 +406728,10 @@ "plasmid_name": "pHAGE-PIK3CA-E103_G106delinsD", "sequence-type": "addgene-full", "addgene_id": "116465", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -383559,7 +406785,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP14", "sequence-type": "addgene-full", "addgene_id": "141267", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -383588,7 +406817,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) FITM2", "sequence-type": "addgene-full", "addgene_id": "107504", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB1", @@ -383650,7 +406882,10 @@ "plasmid_name": "p5E-Runx1+23", "sequence-type": "addgene-full", "addgene_id": "69602", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.12.032", + "https://www.ncbi.nlm.nih.gov/pubmed/25594182" + ], "kit": null, "att_sites": [ "attL4", @@ -383681,7 +406916,10 @@ "plasmid_name": "pDONR223_ATF6_WT", "sequence-type": "addgene-full", "addgene_id": "82098", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -383711,7 +406949,10 @@ "plasmid_name": "R979-X58-008: Hs.KRAS4b(1-188)", "sequence-type": "addgene-full", "addgene_id": "159691", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-019-46846-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31324887" + ], "kit": null, "att_sites": [ "attB1", @@ -383746,7 +406987,10 @@ "plasmid_name": "pDONR221-SLC16A14_STOP", "sequence-type": "depositor-full", "addgene_id": "161092", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -383777,7 +407021,10 @@ "plasmid_name": "ath5:H2B-RFP", "sequence-type": "addgene-full", "addgene_id": "105960", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "att_sites": [ "attB1", @@ -383826,7 +407073,10 @@ "plasmid_name": "pAM PAT-ProTRY GW", "sequence-type": "depositor-full", "addgene_id": "79755", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094698", + "https://www.ncbi.nlm.nih.gov/pubmed/23900543" + ], "kit": null, "att_sites": [ "attR1", @@ -383858,7 +407108,10 @@ "plasmid_name": "EGFP-Mm_Plk5(300-595) PBD domain", "sequence-type": "addgene-full", "addgene_id": "136316", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.00607-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21245385" + ], "kit": null, "att_sites": [ "attB1", @@ -383911,7 +407164,10 @@ "plasmid_name": "R701-X22-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) G13D", "sequence-type": "addgene-full", "addgene_id": "159571", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -383959,7 +407215,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST LIN28A", "sequence-type": "depositor-full", "addgene_id": "43797", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.036491.112", + "https://www.ncbi.nlm.nih.gov/pubmed/23481595" + ], "kit": null, "att_sites": [ "attB1", @@ -384004,7 +407263,10 @@ "plasmid_name": "pAG423GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14174", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -384066,7 +407328,10 @@ "plasmid_name": "pHAGE-PHF21A__CAMK1D", "sequence-type": "addgene-full", "addgene_id": "116831", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -384117,7 +407382,10 @@ "plasmid_name": "pHAGE-RAF1", "sequence-type": "addgene-full", "addgene_id": "116785", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -384171,7 +407439,10 @@ "plasmid_name": "pJH203_pE12_hyCal9-mCherry", "sequence-type": "addgene-full", "addgene_id": "160416", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -384202,7 +407473,10 @@ "plasmid_name": "pDONR221_SLC35G6", "sequence-type": "addgene-full", "addgene_id": "132096", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -384233,7 +407507,6 @@ "plasmid_name": "pLEX307-TMPRSS4-blast", "sequence-type": "addgene-full", "addgene_id": "158473", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -384293,7 +407566,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-pFOGc::venus-RfA", "sequence-type": "addgene-full", "addgene_id": "186400", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -384334,7 +407610,10 @@ "plasmid_name": "pAG423GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14413", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -384397,7 +407676,10 @@ "plasmid_name": "Lyn11-BirA*-HA", "sequence-type": "addgene-full", "addgene_id": "214474", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E23-06-0255", + "https://www.ncbi.nlm.nih.gov/pubmed/38117590" + ], "kit": null, "file": "data/addgene_plasmids/214474.addgene-full.gb" }, @@ -384406,7 +407688,6 @@ "plasmid_name": "pcDNA-SUN2 mApple", "sequence-type": "addgene-full", "addgene_id": "187679", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -384459,7 +407740,10 @@ "plasmid_name": "pDONR223_CD70_WT", "sequence-type": "addgene-full", "addgene_id": "82003", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -384491,7 +407775,10 @@ "plasmid_name": "p414GPD-3xFLAG-Nop4 WT", "sequence-type": "addgene-full", "addgene_id": "169261", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2017777118", + "https://www.ncbi.nlm.nih.gov/pubmed/33941690" + ], "kit": null, "att_sites": [ "attB1", @@ -384542,7 +407829,10 @@ "plasmid_name": "pAG423GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14389", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -384605,7 +407895,10 @@ "plasmid_name": "pAG414GPD-OsCYP711A3(pYL761)", "sequence-type": "addgene-full", "addgene_id": "178300", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -384657,7 +407950,6 @@ "plasmid_name": "pSMPUW_6.14_M4_Ef1a-HA-gateway-SV40-Zeo", "sequence-type": "addgene-full", "addgene_id": "128450", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -384704,7 +407996,10 @@ "plasmid_name": "pEN_TT 3xFLAG-TWIST2", "sequence-type": "addgene-full", "addgene_id": "197935", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.277559.122", + "https://www.ncbi.nlm.nih.gov/pubmed/36810156" + ], "kit": null, "att_sites": [ "attL1", @@ -384733,7 +408028,10 @@ "plasmid_name": "Flag-HA-COPS6", "sequence-type": "addgene-full", "addgene_id": "22542", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -384778,7 +408076,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0489-luc2", "sequence-type": "addgene-full", "addgene_id": "214640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -384822,7 +408123,10 @@ "plasmid_name": "pDONR223_TGFBR1_WT", "sequence-type": "addgene-full", "addgene_id": "82237", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -384851,7 +408155,10 @@ "plasmid_name": "p35ST", "sequence-type": "depositor-full", "addgene_id": "51514", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attB1", @@ -384904,7 +408211,10 @@ "plasmid_name": "pcDNA3.1 PA-mCit-GW", "sequence-type": "addgene-full", "addgene_id": "113448", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "att_sites": [ "attR1", @@ -384960,7 +408270,10 @@ "plasmid_name": "pDONR221_SLC38A3", "sequence-type": "addgene-full", "addgene_id": "132142", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -384991,7 +408304,6 @@ "plasmid_name": "EEF1A2 - R382H in pENTR", "sequence-type": "addgene-full", "addgene_id": "216590", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -385020,7 +408332,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(L301R/V303R)-IRES-neo", "sequence-type": "addgene-full", "addgene_id": "128664", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -385070,7 +408385,10 @@ "plasmid_name": "pLD-puro-Cc-TARDBP-G287A_VA", "sequence-type": "addgene-full", "addgene_id": "141328", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "att_sites": [ "attB1", @@ -385132,7 +408450,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-EDF1", "sequence-type": "depositor-full", "addgene_id": "38079", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -385178,7 +408499,10 @@ "plasmid_name": "pdestMB14_sur5p-dCas9-VP64", "sequence-type": "addgene-full", "addgene_id": "177788", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2022.102085", + "https://www.ncbi.nlm.nih.gov/pubmed/35636511" + ], "kit": null, "att_sites": [ "attB1", @@ -385226,7 +408550,10 @@ "plasmid_name": "pDONR223_HRAS_p.A11D", "sequence-type": "addgene-full", "addgene_id": "81305", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -385258,7 +408585,10 @@ "plasmid_name": "MAC_N_PAX2", "sequence-type": "addgene-full", "addgene_id": "187736", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -385303,7 +408633,10 @@ "plasmid_name": "pDest-302 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161894", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -385343,7 +408676,10 @@ "plasmid_name": "pSL14 - Prp8 2142\u20132398", "sequence-type": "addgene-full", "addgene_id": "90264", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.710848", + "https://www.ncbi.nlm.nih.gov/pubmed/27072132" + ], "kit": null, "att_sites": [ "attB2" @@ -385376,7 +408712,10 @@ "plasmid_name": "pENTR1a-jAspSnFR3-mRuby3", "sequence-type": "addgene-full", "addgene_id": "203491", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "att_sites": [ "attL1", @@ -385404,7 +408743,10 @@ "plasmid_name": "pDONR221_SLC47A2", "sequence-type": "addgene-full", "addgene_id": "132239", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -385435,7 +408777,10 @@ "plasmid_name": "pYPQ265E6", "sequence-type": "addgene-full", "addgene_id": "213469", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-024-49473-w", + "https://www.ncbi.nlm.nih.gov/pubmed/38877035" + ], "kit": null, "att_sites": [ "attL1", @@ -385470,7 +408815,10 @@ "plasmid_name": "pWZL-Neo-Myr-Flag-DEST", "sequence-type": "addgene-full", "addgene_id": "15300", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attR1", @@ -385516,7 +408864,6 @@ "plasmid_name": "pDest_U6_A2_CG2_T1snp_gRNA", "sequence-type": "addgene-full", "addgene_id": "213789", - "references": [], "kit": null, "file": "data/addgene_plasmids/213789.addgene-full.gb" }, @@ -385525,7 +408872,6 @@ "plasmid_name": "R777-E190 Hs.PREX2-nostop", "sequence-type": "depositor-full", "addgene_id": "70474", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -385554,7 +408900,10 @@ "plasmid_name": "CSIV-DEST", "sequence-type": "addgene-full", "addgene_id": "141053", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR1", @@ -385614,7 +408963,10 @@ "plasmid_name": "pGC235", "sequence-type": "depositor-full", "addgene_id": "19683", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attL1", @@ -385645,7 +408997,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO-miR-30 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62123", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -385681,7 +409036,10 @@ "plasmid_name": "pPB-cT3G-cERP2-ELK1", "sequence-type": "addgene-full", "addgene_id": "192918", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -385727,7 +409085,10 @@ "plasmid_name": "pHAGE-RAC1-P34R", "sequence-type": "addgene-full", "addgene_id": "116651", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -385782,7 +409143,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS5", "sequence-type": "addgene-full", "addgene_id": "145348", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -385825,7 +409189,10 @@ "plasmid_name": "pDL70", "sequence-type": "addgene-full", "addgene_id": "175897", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -385849,7 +409216,10 @@ "plasmid_name": "pCFJ895 - pEXP5605(cbr-unc-119)[Psmu-1 |smu-1 genomic | GFP-smu-1UTR]", "sequence-type": "depositor-full", "addgene_id": "159817", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -385882,7 +409252,10 @@ "plasmid_name": "pHAGE-PIK3CA-C604R", "sequence-type": "addgene-full", "addgene_id": "116458", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -385936,7 +409309,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp10", "sequence-type": "depositor-full", "addgene_id": "168899", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168899.depositor-full.gb" }, @@ -385945,7 +409321,10 @@ "plasmid_name": "pLX304-ARNT", "sequence-type": "addgene-full", "addgene_id": "203578", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw1026", + "https://www.ncbi.nlm.nih.gov/pubmed/30872525" + ], "kit": null, "att_sites": [ "attB1", @@ -386004,7 +409383,10 @@ "plasmid_name": "HJP-473-DNE>FLP-T2A-CreAB-NrdJ-1N", "sequence-type": "addgene-full", "addgene_id": "162480", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "att_sites": [ "attB1", @@ -386036,7 +409418,6 @@ "plasmid_name": "R777-E066 Hs.ETS2-nostop", "sequence-type": "addgene-full", "addgene_id": "70350", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -386064,7 +409445,10 @@ "plasmid_name": "pDONR221-ZNF805", "sequence-type": "depositor-full", "addgene_id": "101589", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -386095,7 +409479,10 @@ "plasmid_name": "pCPP5060", "sequence-type": "addgene-full", "addgene_id": "128716", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-2958.2004.04285.x", + "https://www.ncbi.nlm.nih.gov/pubmed/15469508" + ], "kit": null, "att_sites": [ "attL1", @@ -386118,7 +409505,10 @@ "plasmid_name": "pDONR221_SLC25A43", "sequence-type": "addgene-full", "addgene_id": "132030", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -386149,7 +409539,6 @@ "plasmid_name": "pDONR221-appa", "sequence-type": "addgene-full", "addgene_id": "192745", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -386181,7 +409570,10 @@ "plasmid_name": "SFRS17A", "sequence-type": "addgene-full", "addgene_id": "156010", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -386224,7 +409616,10 @@ "plasmid_name": "pHAGE-CDK12", "sequence-type": "addgene-full", "addgene_id": "116723", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -386274,7 +409669,10 @@ "plasmid_name": "pLenti X2 Zeo DEST (749-3)", "sequence-type": "depositor-full", "addgene_id": "21562", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -386322,7 +409720,10 @@ "plasmid_name": "MAC_C_MRM1", "sequence-type": "addgene-full", "addgene_id": "111671", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -386367,7 +409768,10 @@ "plasmid_name": "pGWT35S-KOC155-MXMT", "sequence-type": "addgene-full", "addgene_id": "182726", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "att_sites": [ "attB1", @@ -386409,7 +409813,6 @@ "plasmid_name": "IDG_TMC4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161652", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -386468,7 +409871,10 @@ "plasmid_name": "pDONR223_HRAS_p.G12A", "sequence-type": "addgene-full", "addgene_id": "81277", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -386500,7 +409906,10 @@ "plasmid_name": "pTol2CG2-QUAS5x:GFPNLS-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155122", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "att_sites": [ "attB1", @@ -386548,7 +409957,10 @@ "plasmid_name": "TFORF3518", "sequence-type": "depositor-full", "addgene_id": "144994", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -386608,7 +410020,10 @@ "plasmid_name": "p5Edusp5E1", "sequence-type": "addgene-full", "addgene_id": "90122", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -386639,7 +410054,10 @@ "plasmid_name": "pFRT-TODestMYC_RBPMS_KDR", "sequence-type": "depositor-full", "addgene_id": "65667", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -386683,7 +410101,10 @@ "plasmid_name": "pDestTol2-pax3a-kcnj13-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164950", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB1", @@ -386729,7 +410150,10 @@ "plasmid_name": "pSBDEST.N", "sequence-type": "addgene-full", "addgene_id": "79468", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attR1", @@ -386778,7 +410202,10 @@ "plasmid_name": "His8:MBP-tev-Ala-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83393", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.14497", + "https://www.ncbi.nlm.nih.gov/pubmed/28277608" + ], "kit": null, "att_sites": [ "attB1", @@ -386818,7 +410245,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(V303R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128659", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -386868,7 +410298,10 @@ "plasmid_name": "pcDNA5FRT/TO-p47-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113475", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -386912,7 +410345,10 @@ "plasmid_name": "pHAGE-PIK3CA-N345K", "sequence-type": "addgene-full", "addgene_id": "116517", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -386967,7 +410403,10 @@ "plasmid_name": "pSMALB", "sequence-type": "addgene-full", "addgene_id": "161786", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2013.11.021", + "https://www.ncbi.nlm.nih.gov/pubmed/24388174" + ], "kit": null, "att_sites": [ "attR1", @@ -387028,7 +410467,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP15", "sequence-type": "addgene-full", "addgene_id": "169388", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -387071,7 +410509,10 @@ "plasmid_name": "pCFJ2437 - [1-2] ENTR - Fluor - ce-tagRFP-T(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159857", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -387102,7 +410543,10 @@ "plasmid_name": "TRAPPC10_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176998", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -387158,7 +410602,10 @@ "plasmid_name": "MAC_C_RYK", "sequence-type": "addgene-full", "addgene_id": "187790", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -387203,7 +410650,10 @@ "plasmid_name": "pDONR223_YY1_WT", "sequence-type": "addgene-full", "addgene_id": "82171", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -387233,7 +410683,10 @@ "plasmid_name": "pDONR223_PSG2_p.S265C", "sequence-type": "addgene-full", "addgene_id": "81338", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -387265,7 +410718,10 @@ "plasmid_name": "pPB-R1R2-EM7neoPheS", "sequence-type": "addgene-full", "addgene_id": "112923", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-018-1581-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30477585" + ], "kit": null, "att_sites": [ "attR1", @@ -387309,7 +410765,10 @@ "plasmid_name": "pADH1-GW", "sequence-type": "addgene-full", "addgene_id": "209372", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -387349,7 +410808,10 @@ "plasmid_name": "pDONR221_SLC4A7", "sequence-type": "addgene-full", "addgene_id": "132204", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -387379,7 +410841,10 @@ "plasmid_name": "pDONR223 GABARAPL1 G116", "sequence-type": "addgene-full", "addgene_id": "123085", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -387408,7 +410873,9 @@ "plasmid_name": "pMpGWB316", "sequence-type": "depositor-full", "addgene_id": "68644", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -387456,7 +410923,10 @@ "plasmid_name": "pPB-cT3G-cERP2-NR4A1", "sequence-type": "addgene-full", "addgene_id": "192925", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -387502,7 +410972,10 @@ "plasmid_name": "pGMEH-10M1-clpX", "sequence-type": "depositor-full", "addgene_id": "27373", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkp015", + "https://www.ncbi.nlm.nih.gov/pubmed/19174563" + ], "kit": null, "att_sites": [ "attB1", @@ -387536,7 +411009,6 @@ "plasmid_name": "R777-E306 Hs.SCRIB-nostop", "sequence-type": "depositor-full", "addgene_id": "70590", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -387565,7 +411037,10 @@ "plasmid_name": "pAG424GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14223", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -387628,7 +411103,10 @@ "plasmid_name": "pDONR223_SETDB1_WT", "sequence-type": "addgene-full", "addgene_id": "82291", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -387657,7 +411135,10 @@ "plasmid_name": "pGATOR", "sequence-type": "depositor-full", "addgene_id": "64102", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1312062110", + "https://www.ncbi.nlm.nih.gov/pubmed/24082130" + ], "kit": null, "att_sites": [ "attR1", @@ -387712,7 +411193,10 @@ "plasmid_name": "C125-E01: stuffer", "sequence-type": "addgene-full", "addgene_id": "162900", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -387745,7 +411229,10 @@ "plasmid_name": "pLCS103", "sequence-type": "addgene-full", "addgene_id": "209356", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -387786,7 +411273,10 @@ "plasmid_name": "pHAGE-PGUS", "sequence-type": "addgene-full", "addgene_id": "207827", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -387840,7 +411330,10 @@ "plasmid_name": "pAG414GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14168", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -387852,7 +411345,10 @@ "plasmid_name": "pYPQ265E7", "sequence-type": "addgene-full", "addgene_id": "213470", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-024-49473-w", + "https://www.ncbi.nlm.nih.gov/pubmed/38877035" + ], "kit": null, "att_sites": [ "attL1", @@ -387887,7 +411383,10 @@ "plasmid_name": "pDONR221-HOXD8", "sequence-type": "addgene-full", "addgene_id": "101402", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -387918,7 +411417,10 @@ "plasmid_name": "pENTR D-TOPO-C3_9", "sequence-type": "addgene-full", "addgene_id": "60258", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -387949,7 +411451,10 @@ "plasmid_name": "pDONR221_SLC6A9", "sequence-type": "addgene-full", "addgene_id": "132220", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -387980,7 +411485,6 @@ "plasmid_name": "Hs.KRAS4b M188L", "sequence-type": "depositor-full", "addgene_id": "83141", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -388006,7 +411510,10 @@ "plasmid_name": "pLenti-jAspSnFR3", "sequence-type": "addgene-full", "addgene_id": "203488", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "att_sites": [ "attB1", @@ -388069,7 +411576,6 @@ "plasmid_name": "K40R-short-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "195407", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -388119,7 +411625,10 @@ "plasmid_name": "C413-E31: attB4-TRE3Gp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162924", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -388154,7 +411663,10 @@ "plasmid_name": "pCZGY921", "sequence-type": "addgene-full", "addgene_id": "135092", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.1000265", + "https://www.ncbi.nlm.nih.gov/pubmed/20027209" + ], "kit": null, "att_sites": [ "attB1", @@ -388196,7 +411708,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 55-852)", "sequence-type": "addgene-full", "addgene_id": "119314", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -388248,7 +411763,10 @@ "plasmid_name": "pCellFree_G06_ZIKV E", "sequence-type": "addgene-full", "addgene_id": "145351", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -388284,7 +411802,10 @@ "plasmid_name": "pPB-cT3G-cERP2-FOSB", "sequence-type": "addgene-full", "addgene_id": "192901", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -388330,7 +411851,10 @@ "plasmid_name": "LIIIbeta R C-D", "sequence-type": "depositor-full", "addgene_id": "54392", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54392.depositor-full.gb" }, @@ -388339,7 +411863,10 @@ "plasmid_name": "pALS099 (pGEX-2TP-cTevHis-DEST)", "sequence-type": "addgene-full", "addgene_id": "139787", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301518", + "https://www.ncbi.nlm.nih.gov/pubmed/30185429" + ], "kit": null, "att_sites": [ "attR1", @@ -388385,7 +411912,10 @@ "plasmid_name": "pHAGE-PTPN11-V51A", "sequence-type": "addgene-full", "addgene_id": "116648", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -388435,7 +411965,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp15", "sequence-type": "depositor-full", "addgene_id": "168961", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -388464,7 +411997,6 @@ "plasmid_name": "EEF1A2 - G305S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216589", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -388493,7 +412025,6 @@ "plasmid_name": "R777-E142 Hs.NFE2L2-nostop", "sequence-type": "depositor-full", "addgene_id": "70426", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -388521,7 +412052,10 @@ "plasmid_name": "pAG426GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14395", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -388584,7 +412118,10 @@ "plasmid_name": "pMuLE ENTR SV40 Luc2 (FF-Luciferase) L3-L2", "sequence-type": "depositor-full", "addgene_id": "62171", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -388620,7 +412157,10 @@ "plasmid_name": "UAS:Zebrabow-B", "sequence-type": "addgene-full", "addgene_id": "118216", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094631", + "https://www.ncbi.nlm.nih.gov/pubmed/23757414" + ], "kit": null, "att_sites": [ "attB1", @@ -388663,7 +412203,10 @@ "plasmid_name": "pDEHISSIRV119", "sequence-type": "addgene-full", "addgene_id": "97054", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "att_sites": [ "attB1", @@ -388698,7 +412241,10 @@ "plasmid_name": "pDEST15-Eps8L2_1-183", "sequence-type": "addgene-full", "addgene_id": "196535", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attB1", @@ -388732,7 +412278,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0529-luc2", "sequence-type": "addgene-full", "addgene_id": "214659", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -388777,7 +412326,6 @@ "plasmid_name": "pEF 3-6HTnos-2", "sequence-type": "depositor-full", "addgene_id": "20102", - "references": [], "kit": null, "att_sites": [ "attL2", @@ -388810,7 +412358,10 @@ "plasmid_name": "pDONR221-SLC4A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161442", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -388841,7 +412392,10 @@ "plasmid_name": "pENTR/D-Topo genomic A. thaliana IMPORTIN ALPHA 4", "sequence-type": "addgene-full", "addgene_id": "175815", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12691", + "https://www.ncbi.nlm.nih.gov/pubmed/25284001" + ], "kit": null, "att_sites": [ "attL1", @@ -388872,7 +412426,10 @@ "plasmid_name": "pCFJ2060 - [1-2] ENTR - Tag - Snap (intron(1), syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159873", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -388903,7 +412460,10 @@ "plasmid_name": "MAC_C_DUX4_KBM", "sequence-type": "addgene-full", "addgene_id": "187800", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -388948,7 +412508,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.E290K", "sequence-type": "addgene-full", "addgene_id": "81387", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -388980,7 +412543,10 @@ "plasmid_name": "pB-Halo,IRES-NGFR", "sequence-type": "addgene-full", "addgene_id": "164520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.10.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33080218" + ], "kit": null, "att_sites": [ "attR1", @@ -389043,7 +412609,10 @@ "plasmid_name": "MAC_N_KLF16", "sequence-type": "addgene-full", "addgene_id": "167769", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -389088,7 +412657,10 @@ "plasmid_name": "pDONRp5-p2 SspB-mCherry-CShroom3", "sequence-type": "addgene-full", "addgene_id": "170977", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33115-0", + "https://www.ncbi.nlm.nih.gov/pubmed/36104355" + ], "kit": null, "att_sites": [ "attL2", @@ -389123,7 +412695,10 @@ "plasmid_name": "pDest_U6_A2_CG2_T3_gRNA", "sequence-type": "addgene-full", "addgene_id": "199389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "att_sites": [ "attR3", @@ -389167,7 +412742,10 @@ "plasmid_name": "pHAGE-PIK3CA-R108L", "sequence-type": "addgene-full", "addgene_id": "116533", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -389221,7 +412799,10 @@ "plasmid_name": "pMW#2", "sequence-type": "addgene-full", "addgene_id": "13349", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/16777607" + ], "kit": null, "att_sites": [ "attB2", @@ -389270,7 +412851,10 @@ "plasmid_name": "pLD-puro-Cc-TARDBP-W385G_VA", "sequence-type": "addgene-full", "addgene_id": "141331", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "att_sites": [ "attB1", @@ -389332,7 +412916,10 @@ "plasmid_name": "pDONR223-EPHB4", "sequence-type": "addgene-full", "addgene_id": "23896", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -389364,7 +412951,10 @@ "plasmid_name": "pYPQ269A2", "sequence-type": "addgene-full", "addgene_id": "164714", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -389403,7 +412993,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term NONO", "sequence-type": "addgene-full", "addgene_id": "187580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -389447,7 +413040,10 @@ "plasmid_name": "pDONR P4-P1R-mKate2", "sequence-type": "depositor-full", "addgene_id": "48344", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -389484,7 +413080,10 @@ "plasmid_name": "pHAGE-WDR12-S127F", "sequence-type": "addgene-full", "addgene_id": "116707", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -389539,7 +413138,10 @@ "plasmid_name": "MSCV-N BNLF2a", "sequence-type": "addgene-full", "addgene_id": "37941", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "att_sites": [ "attB1", @@ -389584,7 +413186,10 @@ "plasmid_name": "pCAG/ATP11B-HA", "sequence-type": "addgene-full", "addgene_id": "209219", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -389628,7 +413233,6 @@ "plasmid_name": "pENTR-L4R1-hCMVstar1+bgloInt", "sequence-type": "addgene-full", "addgene_id": "139528", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -389662,7 +413266,10 @@ "plasmid_name": "pDONR223-MST1R", "sequence-type": "addgene-full", "addgene_id": "23942", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -389694,7 +413301,10 @@ "plasmid_name": "Active Wnt10A-V5", "sequence-type": "depositor-full", "addgene_id": "43822", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -389742,7 +413352,10 @@ "plasmid_name": "EE-LRRK2", "sequence-type": "addgene-full", "addgene_id": "193583", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2205492119", + "https://www.ncbi.nlm.nih.gov/pubmed/36256825" + ], "kit": null, "att_sites": [ "attB1", @@ -389787,7 +413400,6 @@ "plasmid_name": "IDG_TTYH2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161676", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -389846,7 +413458,10 @@ "plasmid_name": "pDEST-Myc-FBW7]K404R", "sequence-type": "addgene-full", "addgene_id": "200715", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "att_sites": [ "attB1", @@ -389898,7 +413513,10 @@ "plasmid_name": "pDest-521", "sequence-type": "addgene-full", "addgene_id": "159688", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-21422-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33608534" + ], "kit": null, "att_sites": [ "attR1", @@ -389945,7 +413563,10 @@ "plasmid_name": "pBabe-Hygro-GFP", "sequence-type": "addgene-full", "addgene_id": "61215", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.06.021", + "https://www.ncbi.nlm.nih.gov/pubmed/25042806" + ], "kit": null, "att_sites": [ "attB1", @@ -389977,7 +413598,6 @@ "plasmid_name": "R777-E184 Hs.PIN1-nostop", "sequence-type": "depositor-full", "addgene_id": "70468", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -390005,7 +413625,10 @@ "plasmid_name": "pMA122 - peel-1 negative selection", "sequence-type": "addgene-full", "addgene_id": "34873", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attB1", @@ -390039,7 +413662,6 @@ "plasmid_name": "pAG416GAL-3x-uC-HCoV-NL63_3CL", "sequence-type": "addgene-full", "addgene_id": "201938", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -390086,7 +413708,10 @@ "plasmid_name": "pDONR221_SLC25A10", "sequence-type": "addgene-full", "addgene_id": "132014", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -390117,7 +413742,10 @@ "plasmid_name": "pENTR221-YAP1", "sequence-type": "addgene-full", "addgene_id": "79503", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -390151,7 +413779,10 @@ "plasmid_name": "pCPP5371", "sequence-type": "addgene-full", "addgene_id": "128732", - "references": [], + "references": [ + "https://doi.org/10.1128/JB.00998-07", + "https://www.ncbi.nlm.nih.gov/pubmed/17827286" + ], "kit": null, "att_sites": [ "attR2" @@ -390184,7 +413815,10 @@ "plasmid_name": "Tet-myr-GFP", "sequence-type": "depositor-full", "addgene_id": "83468", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201501025", + "https://www.ncbi.nlm.nih.gov/pubmed/26216901" + ], "kit": null, "att_sites": [ "attB1", @@ -390256,7 +413890,10 @@ "plasmid_name": "SNW1", "sequence-type": "addgene-full", "addgene_id": "156034", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -390299,7 +413936,10 @@ "plasmid_name": "pHAGE-MCM5__LYN", "sequence-type": "addgene-full", "addgene_id": "116828", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -390350,7 +413990,10 @@ "plasmid_name": "TU#1450_unc-53a_cDNA", "sequence-type": "addgene-full", "addgene_id": "82361", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1607179113", + "https://www.ncbi.nlm.nih.gov/pubmed/27274054" + ], "kit": null, "att_sites": [ "attL1", @@ -390381,7 +414024,10 @@ "plasmid_name": "pEarleyGate103 mmPing20F", "sequence-type": "addgene-full", "addgene_id": "140007", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.300", + "https://www.ncbi.nlm.nih.gov/pubmed/33506165" + ], "kit": null, "att_sites": [ "attB1", @@ -390422,7 +414068,10 @@ "plasmid_name": "R701-X20-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) G12C", "sequence-type": "addgene-full", "addgene_id": "159568", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -390470,7 +414119,10 @@ "plasmid_name": "pHAGE-PIK3R1-I381Kfs*15", "sequence-type": "addgene-full", "addgene_id": "116595", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -390521,7 +414173,10 @@ "plasmid_name": "pDONR221-ZNF735", "sequence-type": "depositor-full", "addgene_id": "101595", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -390552,7 +414207,10 @@ "plasmid_name": "pLentiPGK Puro DEST JNKKTR AE Clover", "sequence-type": "addgene-full", "addgene_id": "90240", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "att_sites": [ "attB1", @@ -390614,7 +414272,10 @@ "plasmid_name": "pDONR223_XBP1_WT", "sequence-type": "addgene-full", "addgene_id": "82168", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -390643,7 +414304,10 @@ "plasmid_name": "pDONR223_RHOA_p.T175M", "sequence-type": "addgene-full", "addgene_id": "81321", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -390676,7 +414340,6 @@ "plasmid_name": "p667-UBC-PSKH2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170585", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -390742,7 +414405,10 @@ "plasmid_name": "pGEM-gate", "sequence-type": "depositor-full", "addgene_id": "113758", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -390789,7 +414455,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF9b", "sequence-type": "depositor-full", "addgene_id": "168885", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -390818,7 +414487,10 @@ "plasmid_name": "pDONR223_SLIRP_WT", "sequence-type": "addgene-full", "addgene_id": "82288", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -390847,7 +414519,10 @@ "plasmid_name": "C239-E03: attB2r-IRES-ffLuc2-pA-attB3", "sequence-type": "addgene-full", "addgene_id": "162919", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -390879,7 +414554,10 @@ "plasmid_name": "pHAGE-ROR1-T69M", "sequence-type": "addgene-full", "addgene_id": "116675", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -390929,7 +414607,10 @@ "plasmid_name": "pAAV-Fos-CreERT2", "sequence-type": "addgene-full", "addgene_id": "194643", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-022-01223-1", + "https://www.ncbi.nlm.nih.gov/pubmed/36564546" + ], "kit": null, "att_sites": [ "attB1", @@ -390968,7 +414649,10 @@ "plasmid_name": "pMpGWB103-Citrine", "sequence-type": "depositor-full", "addgene_id": "79137", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pct168", + "https://www.ncbi.nlm.nih.gov/pubmed/24259681" + ], "kit": null, "att_sites": [ "attB1", @@ -391012,7 +414696,10 @@ "plasmid_name": "Silene_conica _TyrRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202657", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "att_sites": [ "attB1", @@ -391050,7 +414737,10 @@ "plasmid_name": "pNFkB:eGFP", "sequence-type": "addgene-full", "addgene_id": "44922", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2011.03.042", + "https://www.ncbi.nlm.nih.gov/pubmed/21439961" + ], "kit": null, "att_sites": [ "attB1", @@ -391099,7 +414789,9 @@ "plasmid_name": "pMpGWB225", "sequence-type": "depositor-full", "addgene_id": "68616", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -391148,7 +414840,10 @@ "plasmid_name": "pDONR221_SLC41A3", "sequence-type": "addgene-full", "addgene_id": "132166", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -391179,7 +414874,10 @@ "plasmid_name": "pDestTol2-actinb-kcnk9-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164949", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB1", @@ -391227,7 +414925,10 @@ "plasmid_name": "pAG424GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14271", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -391288,7 +414989,10 @@ "plasmid_name": "Flag-HA-USP11", "sequence-type": "addgene-full", "addgene_id": "22566", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -391333,7 +415037,10 @@ "plasmid_name": "pDe_Cas9_KANA_R160b", "sequence-type": "addgene-full", "addgene_id": "173757", - "references": [], + "references": [ + "https://doi.org/10.1093/hr/uhac147", + "https://www.ncbi.nlm.nih.gov/pubmed/36072839" + ], "kit": null, "att_sites": [ "attB1", @@ -391378,7 +415085,6 @@ "plasmid_name": "L4440gtwy", "sequence-type": "addgene-full", "addgene_id": "11344", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -391414,7 +415120,10 @@ "plasmid_name": "pDONR223_ING1_WT", "sequence-type": "addgene-full", "addgene_id": "82213", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -391443,7 +415152,10 @@ "plasmid_name": "pMuLE ENTR SV40 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62095", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -391477,7 +415189,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0546-luc2", "sequence-type": "addgene-full", "addgene_id": "214664", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -391523,7 +415238,10 @@ "plasmid_name": "C453-E26: attB4-T7p>-attB5", "sequence-type": "addgene-full", "addgene_id": "162982", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -391553,7 +415271,10 @@ "plasmid_name": "pDEST40-2XFL-wtSrc", "sequence-type": "addgene-full", "addgene_id": "140295", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -391605,7 +415326,10 @@ "plasmid_name": "MAC_N_ETV5", "sequence-type": "addgene-full", "addgene_id": "167754", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -391650,7 +415374,10 @@ "plasmid_name": "KCNJ15_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176981", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -391702,7 +415429,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF3b", "sequence-type": "addgene-full", "addgene_id": "169391", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -391745,7 +415471,10 @@ "plasmid_name": "pDONR221_UCP2", "sequence-type": "addgene-full", "addgene_id": "132286", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -391776,7 +415505,10 @@ "plasmid_name": "p6608 MSCV-IP N-HAonly CHAF1B", "sequence-type": "addgene-full", "addgene_id": "34901", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1116776109", + "https://www.ncbi.nlm.nih.gov/pubmed/22232672" + ], "kit": null, "att_sites": [ "attB1", @@ -391819,7 +415551,10 @@ "plasmid_name": "MAC_C_HXK1", "sequence-type": "addgene-full", "addgene_id": "111668", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -391863,7 +415598,10 @@ "plasmid_name": "WPXL LEFTY2 gRNA", "sequence-type": "addgene-full", "addgene_id": "101924", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-017-0002-y", + "https://www.ncbi.nlm.nih.gov/pubmed/29203910" + ], "kit": null, "att_sites": [ "attB1", @@ -391916,7 +415654,6 @@ "plasmid_name": "pLEX307-TMPRSS2-puro", "sequence-type": "addgene-full", "addgene_id": "158457", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -391976,7 +415713,10 @@ "plasmid_name": "TFORF3512", "sequence-type": "depositor-full", "addgene_id": "144988", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -392036,7 +415776,10 @@ "plasmid_name": "pEX-CMV-SP-CFP-STM2(15-746)", "sequence-type": "depositor-full", "addgene_id": "18863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "file": "data/addgene_plasmids/18863.depositor-full.gb" }, @@ -392045,7 +415788,10 @@ "plasmid_name": "pRU54", "sequence-type": "addgene-full", "addgene_id": "167680", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -392097,7 +415843,9 @@ "plasmid_name": "pMpGWB330", "sequence-type": "depositor-full", "addgene_id": "68658", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68658.depositor-full.gb" }, @@ -392106,7 +415854,10 @@ "plasmid_name": "pHAGE-NOTCH2NL-R87M", "sequence-type": "addgene-full", "addgene_id": "116441", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -392161,7 +415912,10 @@ "plasmid_name": "pWZL Neo Myr Flag ADRBK2", "sequence-type": "addgene-full", "addgene_id": "20419", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -392202,7 +415956,10 @@ "plasmid_name": "SFRS16", "sequence-type": "addgene-full", "addgene_id": "156009", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -392245,7 +416002,10 @@ "plasmid_name": "pHAGE-EGFR__ERP44", "sequence-type": "addgene-full", "addgene_id": "116815", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -392296,7 +416056,10 @@ "plasmid_name": "pDONR221_SLC25A36", "sequence-type": "addgene-full", "addgene_id": "132029", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -392328,7 +416091,10 @@ "plasmid_name": "pLENTI_Hu_ECT2(T327D)", "sequence-type": "addgene-full", "addgene_id": "136332", - "references": [], + "references": [ + "https://doi.org/10.1038/nm.4364", + "https://www.ncbi.nlm.nih.gov/pubmed/28692064" + ], "kit": null, "att_sites": [ "attB1", @@ -392390,7 +416156,10 @@ "plasmid_name": "R989-X28-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12D", "sequence-type": "addgene-full", "addgene_id": "159555", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -392432,7 +416201,10 @@ "plasmid_name": "pENTR D-TOPO-C2_13", "sequence-type": "depositor-full", "addgene_id": "60252", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -392463,7 +416235,10 @@ "plasmid_name": "pLenti-Creb5(HA)", "sequence-type": "addgene-full", "addgene_id": "195024", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "file": "data/addgene_plasmids/195024.addgene-full.gb" }, @@ -392472,7 +416247,10 @@ "plasmid_name": "A1-LCD+12D", "sequence-type": "addgene-full", "addgene_id": "178675", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -392507,7 +416285,10 @@ "plasmid_name": "A1-LCD deltahexa", "sequence-type": "addgene-full", "addgene_id": "169714", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "att_sites": [ "attB1", @@ -392542,7 +416323,6 @@ "plasmid_name": "pDEST-attB", "sequence-type": "depositor-full", "addgene_id": "30325", - "references": [], "kit": null, "file": "data/addgene_plasmids/30325.depositor-full.gb" }, @@ -392551,7 +416331,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp14", "sequence-type": "addgene-full", "addgene_id": "168939", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -392580,7 +416363,10 @@ "plasmid_name": "pLEX307-MERS-CoV-3CL-C148A", "sequence-type": "addgene-full", "addgene_id": "160283", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -392640,7 +416426,10 @@ "plasmid_name": "pEN_TT 3xFLAG-DYNLL2", "sequence-type": "addgene-full", "addgene_id": "192296", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192296.addgene-full.gb" }, @@ -392649,7 +416438,10 @@ "plasmid_name": "pDONR223_EGFR_p.R222L", "sequence-type": "addgene-full", "addgene_id": "82922", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -392679,7 +416471,10 @@ "plasmid_name": "IX503: pMVP (L3-L2) OLLAS epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121752", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -392713,7 +416508,10 @@ "plasmid_name": "pGWB419", "sequence-type": "depositor-full", "addgene_id": "74813", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -392761,7 +416559,10 @@ "plasmid_name": "pDONR223_KIR3DL2_p.R96Q", "sequence-type": "addgene-full", "addgene_id": "81444", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -392793,7 +416594,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_CdTag-HA", "sequence-type": "addgene-full", "addgene_id": "221493", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -392854,7 +416658,10 @@ "plasmid_name": "pCW-eGFP-SHLD2-m1", "sequence-type": "addgene-full", "addgene_id": "114120", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "att_sites": [ "attB1", @@ -392912,7 +416719,10 @@ "plasmid_name": "TFORF3194", "sequence-type": "addgene-full", "addgene_id": "144670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -392972,7 +416782,10 @@ "plasmid_name": "p3E-Rab27b", "sequence-type": "addgene-full", "addgene_id": "109754", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -393003,7 +416816,6 @@ "plasmid_name": "pFRT-TODestFLAGHA_RNAseH1", "sequence-type": "addgene-full", "addgene_id": "65782", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -393048,7 +416860,10 @@ "plasmid_name": "pDONR221_SLC12A8", "sequence-type": "addgene-full", "addgene_id": "131885", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -393079,7 +416894,10 @@ "plasmid_name": "pAC1802_pmax-RBFOX1N-dCasRx-C", "sequence-type": "addgene-full", "addgene_id": "118635", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attB1", @@ -393111,7 +416929,10 @@ "plasmid_name": "pcDNA3-IKZF2-V2-V5", "sequence-type": "addgene-full", "addgene_id": "107391", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107391.addgene-full.gb" }, @@ -393120,7 +416941,6 @@ "plasmid_name": "pDONR223 LysoFlux (HaloTag7-mGFP-Galectin3-STOP)", "sequence-type": "addgene-full", "addgene_id": "215003", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -393155,7 +416975,6 @@ "plasmid_name": "R777-E038 Hs.DUSP3-nostop", "sequence-type": "depositor-full", "addgene_id": "70322", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -393183,7 +417002,10 @@ "plasmid_name": "pHAGE-ALK-R1209Q", "sequence-type": "addgene-full", "addgene_id": "116110", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -393233,7 +417055,10 @@ "plasmid_name": "pMOS031: superecliptic pHluorin (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163051", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -393295,7 +417120,10 @@ "plasmid_name": "TFORF3114", "sequence-type": "addgene-full", "addgene_id": "144590", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -393355,7 +417183,10 @@ "plasmid_name": "pDONR221-SLC46A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161381", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -393386,7 +417217,10 @@ "plasmid_name": "pDONR223_B2M_WT", "sequence-type": "addgene-full", "addgene_id": "81810", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -393418,7 +417252,10 @@ "plasmid_name": "pcDNA3.2/NS5-Mt-mut", "sequence-type": "addgene-full", "addgene_id": "120830", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -393469,7 +417306,10 @@ "plasmid_name": "p3E-rab23", "sequence-type": "addgene-full", "addgene_id": "109680", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -393500,7 +417340,10 @@ "plasmid_name": "pDONR221_SLC11A1", "sequence-type": "addgene-full", "addgene_id": "131951", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -393531,7 +417374,6 @@ "plasmid_name": "pLenti_PGK_Prkaa1", "sequence-type": "addgene-full", "addgene_id": "204356", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -393591,7 +417433,10 @@ "plasmid_name": "pQLinkHD_EBFP2-mTFP1", "sequence-type": "addgene-full", "addgene_id": "118855", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "att_sites": [ "attB1", @@ -393630,7 +417475,10 @@ "plasmid_name": "TFORF3334", "sequence-type": "addgene-full", "addgene_id": "144810", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144810.addgene-full.gb" }, @@ -393639,7 +417487,10 @@ "plasmid_name": "pDONR223_PIK3R4_p.N870T", "sequence-type": "addgene-full", "addgene_id": "81590", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -393671,7 +417522,10 @@ "plasmid_name": "p5E-161K enhancer-ETS-CORE-MUT", "sequence-type": "addgene-full", "addgene_id": "138372", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attL4", @@ -393702,7 +417556,10 @@ "plasmid_name": "pEBTetD-SNAP-CP110", "sequence-type": "addgene-full", "addgene_id": "136803", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -393747,7 +417604,10 @@ "plasmid_name": "pDONOR223 R2pH-LAMP1-3xFLAG", "sequence-type": "addgene-full", "addgene_id": "157941", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2020.1771858", + "https://www.ncbi.nlm.nih.gov/pubmed/32515674" + ], "kit": null, "att_sites": [ "attL1", @@ -393782,7 +417642,6 @@ "plasmid_name": "pCLX-PGK-hCDK4", "sequence-type": "addgene-full", "addgene_id": "114314", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -393832,7 +417691,10 @@ "plasmid_name": "pDONR223_NRAS_p.Q61H", "sequence-type": "addgene-full", "addgene_id": "81670", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -393864,7 +417726,10 @@ "plasmid_name": "pDR3.13", "sequence-type": "depositor-full", "addgene_id": "19366", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -393887,7 +417752,10 @@ "plasmid_name": "pDONR221-SLC30A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161255", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -393918,7 +417786,10 @@ "plasmid_name": "5'-3xFLAG Sap30bp+exon_siResist minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212085", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -393958,7 +417829,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp16", "sequence-type": "addgene-full", "addgene_id": "168876", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -393987,7 +417861,10 @@ "plasmid_name": "pFUGW-FerH-ffLuc2-eGFP", "sequence-type": "depositor-full", "addgene_id": "71393", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1755-148X.2009.00545.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19175523" + ], "kit": null, "att_sites": [ "attB1", @@ -394032,7 +417909,10 @@ "plasmid_name": "35S-VP16-GWY/pAM", "sequence-type": "addgene-full", "addgene_id": "201234", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16234", + "https://www.ncbi.nlm.nih.gov/pubmed/37323061" + ], "kit": null, "att_sites": [ "attR1", @@ -394068,7 +417948,10 @@ "plasmid_name": "TFORF2968", "sequence-type": "addgene-full", "addgene_id": "144444", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -394128,7 +418011,10 @@ "plasmid_name": "p3E-EEA1", "sequence-type": "addgene-full", "addgene_id": "109560", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -394159,7 +418045,6 @@ "plasmid_name": "pCW57.1_V5_APEX_FLAG_Ct", "sequence-type": "addgene-full", "addgene_id": "194069", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -394217,7 +418102,6 @@ "plasmid_name": "pCM3.05", "sequence-type": "depositor-full", "addgene_id": "19601", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -394240,7 +418124,10 @@ "plasmid_name": "pAG425GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14345", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -394303,7 +418190,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND F405G + S297A", "sequence-type": "addgene-full", "addgene_id": "169974", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -394334,7 +418224,10 @@ "plasmid_name": "ZNF217_pLX307", "sequence-type": "addgene-full", "addgene_id": "98384", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -394394,7 +418287,10 @@ "plasmid_name": "iTol2Amp-\u03b3-crystallin:venusGFP", "sequence-type": "addgene-full", "addgene_id": "108462", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1716713115", + "https://www.ncbi.nlm.nih.gov/pubmed/29610343" + ], "kit": null, "att_sites": [ "attL1", @@ -394435,7 +418331,10 @@ "plasmid_name": "HB401: pMVP (L1-L4) CMV promoter", "sequence-type": "addgene-full", "addgene_id": "121686", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -394470,7 +418369,10 @@ "plasmid_name": "pDONR223_HAVCR2_p.P6S", "sequence-type": "addgene-full", "addgene_id": "82742", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -394499,7 +418401,10 @@ "plasmid_name": "JDW 249 (pTol2-Dll4-F2-ETS#2-WT-8X-E1b-EGFP)", "sequence-type": "addgene-full", "addgene_id": "156417", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -394548,7 +418453,10 @@ "plasmid_name": "pEN_TTmiRc2_p53(R280K)_V5", "sequence-type": "addgene-full", "addgene_id": "136525", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attL1", @@ -394578,7 +418486,10 @@ "plasmid_name": "pDONR221-SLC7A13_STOP", "sequence-type": "addgene-full", "addgene_id": "161327", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -394609,7 +418520,10 @@ "plasmid_name": "pDEST17-cDAXX", "sequence-type": "addgene-full", "addgene_id": "169729", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "att_sites": [ "attB1", @@ -394643,7 +418557,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.D1045V", "sequence-type": "addgene-full", "addgene_id": "81702", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -394675,7 +418592,10 @@ "plasmid_name": "p3E-mTagBFP", "sequence-type": "depositor-full", "addgene_id": "75175", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -394710,7 +418630,10 @@ "plasmid_name": "pBA2257", "sequence-type": "depositor-full", "addgene_id": "38151", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2011.11.015", + "https://www.ncbi.nlm.nih.gov/pubmed/22197595" + ], "kit": null, "att_sites": [ "attB1", @@ -394756,7 +418679,10 @@ "plasmid_name": "TFORF3060", "sequence-type": "addgene-full", "addgene_id": "144536", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -394816,7 +418742,10 @@ "plasmid_name": "pDONR-ARF19", "sequence-type": "depositor-full", "addgene_id": "83846", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83846.depositor-full.gb" }, @@ -394825,7 +418754,10 @@ "plasmid_name": "TFORF3486", "sequence-type": "addgene-full", "addgene_id": "144962", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -394885,7 +418817,9 @@ "plasmid_name": "pDONR221-PDHB", "sequence-type": "addgene-full", "addgene_id": "166195", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -394916,7 +418850,10 @@ "plasmid_name": "pHAGE-EGFR-G719S", "sequence-type": "addgene-full", "addgene_id": "116256", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -394966,7 +418903,10 @@ "plasmid_name": "pENTR223-EBNA3A", "sequence-type": "addgene-full", "addgene_id": "198575", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -394995,7 +418935,10 @@ "plasmid_name": "pDONR223_AKT1_p.Q79K", "sequence-type": "addgene-full", "addgene_id": "81479", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -395028,7 +418971,9 @@ "plasmid_name": "pMpGWB423", "sequence-type": "depositor-full", "addgene_id": "68688", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -395079,7 +419024,10 @@ "plasmid_name": "pDEST-ERBB2-v1", "sequence-type": "addgene-full", "addgene_id": "154901", - "references": [], + "references": [ + "https://doi.org/10.1038/s41388-020-01604-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33420373" + ], "kit": null, "att_sites": [ "attB1", @@ -395112,7 +419060,10 @@ "plasmid_name": "pCR8_TaNAM-A1(1-217)", "sequence-type": "addgene-full", "addgene_id": "124576", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "att_sites": [ "attL1", @@ -395141,7 +419092,10 @@ "plasmid_name": "KL401: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS-Dnmt3a3L", "sequence-type": "addgene-full", "addgene_id": "121840", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -395175,7 +419129,10 @@ "plasmid_name": "pDONR223_MRPS16_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82984", - 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"references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -395360,7 +419329,10 @@ "plasmid_name": "pDONR223_YTHDC1_WT", "sequence-type": "addgene-full", "addgene_id": "81799", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -395393,7 +419365,10 @@ "plasmid_name": "pHAGE-EGFR-Y764_V765insHH", "sequence-type": "addgene-full", "addgene_id": "116319", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -395447,7 +419422,10 @@ "plasmid_name": "TFORF3323", "sequence-type": "addgene-full", "addgene_id": "144799", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -395507,7 +419485,10 @@ "plasmid_name": "pLX301-ZIM3-KRAB-PYL1", "sequence-type": "addgene-full", "addgene_id": "154761", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-020-0966-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33020655" + ], "kit": null, "att_sites": [ "attB1", @@ -395566,7 +419547,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.E600K", "sequence-type": "addgene-full", "addgene_id": "82850", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -395595,7 +419579,10 @@ "plasmid_name": "pDONR221-SLC2A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161268", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -395626,7 +419613,10 @@ "plasmid_name": "pDONR221-kcnj11l", "sequence-type": "addgene-full", "addgene_id": "173140", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -395657,7 +419647,10 @@ "plasmid_name": "pCS2+ macroH2A1.2-GFP-HA", "sequence-type": "depositor-full", "addgene_id": "30515", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2011.144", + "https://www.ncbi.nlm.nih.gov/pubmed/21552206" + ], "kit": null, "att_sites": [ "attB1", @@ -395701,7 +419694,10 @@ "plasmid_name": "BRAF_pLX307", "sequence-type": "addgene-full", "addgene_id": "98322", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -395762,7 +419758,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF6", "sequence-type": "depositor-full", "addgene_id": "168855", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -395791,7 +419790,6 @@ "plasmid_name": "L1-10XQUAS-L4", "sequence-type": "depositor-full", "addgene_id": "41436", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -395824,7 +419822,10 @@ "plasmid_name": "pLX317-VRK1", "sequence-type": "addgene-full", "addgene_id": "199643", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "att_sites": [ "attB1", @@ -395884,7 +419885,10 @@ "plasmid_name": "TFORF3003", "sequence-type": "addgene-full", "addgene_id": "144479", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -395944,7 +419948,10 @@ "plasmid_name": "pLenti6-DCX-EGFP", "sequence-type": "depositor-full", "addgene_id": "80599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2016.04.020", + "https://www.ncbi.nlm.nih.gov/pubmed/27238282" + ], "kit": null, "att_sites": [ "attB1", @@ -396005,7 +420012,9 @@ "plasmid_name": "p5E_hs_Glast (JDW 1182)", "sequence-type": "addgene-full", "addgene_id": "224483", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -396036,7 +420045,10 @@ "plasmid_name": "pDEST-hPDIb\u2032a\u2032", "sequence-type": "depositor-full", "addgene_id": "60556", - "references": [], + "references": [ + "https://doi.org/10.1007/s12010-013-0140-3", + "https://www.ncbi.nlm.nih.gov/pubmed/23471584" + ], "kit": null, "att_sites": [ "attR1", @@ -396081,7 +420093,6 @@ "plasmid_name": "R777-E228 Hs.RASA1-nostop", "sequence-type": "depositor-full", "addgene_id": "70512", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -396110,7 +420121,10 @@ "plasmid_name": "pDONR223_SV2C_p.G630S", "sequence-type": "addgene-full", "addgene_id": "81536", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -396142,7 +420156,10 @@ "plasmid_name": "pDONR221-SLC16A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161113", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -396173,7 +420190,10 @@ "plasmid_name": "pHAGE-FGFR3-D786N", "sequence-type": "addgene-full", "addgene_id": "116382", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -396223,7 +420243,10 @@ "plasmid_name": "pPy-CAG-GFP-IRES-Pac", "sequence-type": "depositor-full", "addgene_id": "48759", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.03.012", + "https://www.ncbi.nlm.nih.gov/pubmed/23582324" + ], "kit": null, "att_sites": [ "attB1", @@ -396270,7 +420293,10 @@ "plasmid_name": "pDON207 NSP3 K977Q", "sequence-type": "addgene-full", "addgene_id": "180057", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -396294,7 +420320,6 @@ "plasmid_name": "R777-E004 Hs.AKT2-nostop", "sequence-type": "depositor-full", "addgene_id": "70288", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -396322,7 +420347,10 @@ "plasmid_name": "actc1b-mKate2-rab34b", "sequence-type": "addgene-full", "addgene_id": "109626", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -396364,7 +420392,10 @@ "plasmid_name": "TFORF3226", "sequence-type": "addgene-full", "addgene_id": "144702", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -396424,7 +420455,10 @@ "plasmid_name": "pGWB541", "sequence-type": "depositor-full", "addgene_id": "74875", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -396475,7 +420509,10 @@ "plasmid_name": "pGC97", "sequence-type": "depositor-full", "addgene_id": "19629", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -396519,7 +420556,10 @@ "plasmid_name": "MAC_N_MED13", "sequence-type": "addgene-full", "addgene_id": "111689", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -396565,7 +420605,6 @@ "plasmid_name": "pLENTI_TetOn_Hu_BIRC5(WT)", "sequence-type": "addgene-full", "addgene_id": "136348", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -396624,7 +420663,10 @@ "plasmid_name": "pENTRbasEGFP", "sequence-type": "addgene-full", "addgene_id": "22453", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attL1", @@ -396664,7 +420706,10 @@ "plasmid_name": "pDONR223_CYLD_WT", "sequence-type": "addgene-full", "addgene_id": "82326", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -396693,7 +420738,6 @@ "plasmid_name": "pDONR221-dyrk1ab", "sequence-type": "addgene-full", "addgene_id": "192726", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -396725,7 +420769,6 @@ "plasmid_name": "R777-E060 Hs.EIF4EBP3-nostop", "sequence-type": "depositor-full", "addgene_id": "70344", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -396753,7 +420796,10 @@ "plasmid_name": "TARDBP", "sequence-type": "addgene-full", "addgene_id": "156073", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -396796,7 +420842,10 @@ "plasmid_name": "PTPRA_Y789F-SHC", "sequence-type": "addgene-full", "addgene_id": "139614", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -396840,7 +420889,10 @@ "plasmid_name": "pDONR221_SLC25A38", "sequence-type": "addgene-full", "addgene_id": "132053", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -396871,7 +420923,10 @@ "plasmid_name": "pYPQ141C", "sequence-type": "depositor-full", "addgene_id": "69292", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL2", @@ -396901,7 +420956,10 @@ "plasmid_name": "p221z-CAS9p-t35s", "sequence-type": "addgene-full", "addgene_id": "118385", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "att_sites": [ "attL1", @@ -396935,7 +420993,10 @@ "plasmid_name": "pHAGE-FGFR1", "sequence-type": "addgene-full", "addgene_id": "116740", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -396990,7 +421051,6 @@ "plasmid_name": "R777-E339 Hs.STK4", "sequence-type": "depositor-full", "addgene_id": "70623", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -397018,7 +421078,10 @@ "plasmid_name": "pAG413GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14190", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -397079,7 +421142,10 @@ "plasmid_name": "pYPQ291-D951A", "sequence-type": "addgene-full", "addgene_id": "129677", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -397111,7 +421177,10 @@ "plasmid_name": "pLX304-KDM6A", "sequence-type": "addgene-full", "addgene_id": "203580", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw1026", + "https://www.ncbi.nlm.nih.gov/pubmed/30872525" + ], "kit": null, "att_sites": [ "attB1", @@ -397172,7 +421241,10 @@ "plasmid_name": "HJP-208-IVS-Syn21-CreAB-NrdJ-1N-WPREUw", "sequence-type": "addgene-full", "addgene_id": "162478", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "att_sites": [ "attR1", @@ -397208,7 +421280,6 @@ "plasmid_name": "IDG_CLCNKA_OE_1", "sequence-type": "addgene-full", "addgene_id": "161631", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -397267,7 +421338,10 @@ "plasmid_name": "pSC14", "sequence-type": "addgene-full", "addgene_id": "104788", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -397310,7 +421384,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-Turbo-NES-YFP", "sequence-type": "addgene-full", "addgene_id": "127366", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attB1", @@ -397358,7 +421435,10 @@ "plasmid_name": "pDONR221-SLC47A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161405", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -397389,7 +421469,10 @@ "plasmid_name": "pT2-cryR;lmo2CE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90141", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90141.addgene-full.gb" }, @@ -397398,7 +421481,10 @@ "plasmid_name": "pLenti CMV/TO DEST (775-1)", "sequence-type": "depositor-full", "addgene_id": "17432", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -397458,7 +421544,10 @@ "plasmid_name": "pDEST-cDNA5-FRT/TO-3*Flag-APEX2 N-term", "sequence-type": "addgene-full", "addgene_id": "182925", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attR1", @@ -397506,7 +421595,6 @@ "plasmid_name": "R777-E206 Hs.PTEN-nostop", "sequence-type": "depositor-full", "addgene_id": "70490", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -397518,7 +421606,10 @@ "plasmid_name": "pHAGE-TBC1D3B-R162Q", "sequence-type": "addgene-full", "addgene_id": "116694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -397573,7 +421664,10 @@ "plasmid_name": "pAG426GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14323", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -397636,7 +421730,10 @@ "plasmid_name": "pHAGE-PIK3CD-R927H", "sequence-type": "addgene-full", "addgene_id": "116574", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -397690,7 +421787,10 @@ "plasmid_name": "pDONR223_RBM15B_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83010", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -397720,7 +421820,10 @@ "plasmid_name": "pDONR223_ARNTL_WT", "sequence-type": "addgene-full", "addgene_id": "82189", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -397749,7 +421852,10 @@ "plasmid_name": "TFORF3540", "sequence-type": "depositor-full", "addgene_id": "145016", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -397809,7 +421915,10 @@ "plasmid_name": "tetO-ESRRG", "sequence-type": "addgene-full", "addgene_id": "170684", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -397872,7 +421981,10 @@ "plasmid_name": "MAC_C_EPHB4", "sequence-type": "addgene-full", "addgene_id": "187768", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -397917,7 +422029,10 @@ "plasmid_name": "pDONR223_EIF4E_WT", "sequence-type": "addgene-full", "addgene_id": "82112", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -397946,7 +422061,10 @@ "plasmid_name": "p8130 MSCV GFP Puro C-FlagHA", "sequence-type": "addgene-full", "addgene_id": "184521", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "att_sites": [ "attB1", @@ -397996,7 +422114,10 @@ "plasmid_name": "POFUT2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176960", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -398048,7 +422169,10 @@ "plasmid_name": "pSLIK-Neo", "sequence-type": "addgene-full", "addgene_id": "25735", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0606179103", + "https://www.ncbi.nlm.nih.gov/pubmed/16945906" + ], "kit": null, "att_sites": [ "attR1", @@ -398118,7 +422242,10 @@ "plasmid_name": "pDONR221-NIPAL1", "sequence-type": "addgene-full", "addgene_id": "132267", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -398149,7 +422276,10 @@ "plasmid_name": "pDONR221-FOXN1", "sequence-type": "addgene-full", "addgene_id": "101445", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -398177,7 +422307,10 @@ "plasmid_name": "pYPQ223 (dAsCpf1-SRDX)", "sequence-type": "addgene-full", "addgene_id": "86209", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "att_sites": [ "attL1", @@ -398209,7 +422342,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-122", "sequence-type": "depositor-full", "addgene_id": "46673", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -398260,7 +422396,6 @@ "plasmid_name": "pLIX403-ccdB-EBFP2", "sequence-type": "addgene-full", "addgene_id": "158562", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -398319,7 +422454,9 @@ "plasmid_name": "pLX317-SNAI1", "sequence-type": "addgene-full", "addgene_id": "115446", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "att_sites": [ "attB1", @@ -398379,7 +422516,10 @@ "plasmid_name": "pDONR221_SLC9A7", "sequence-type": "addgene-full", "addgene_id": "132187", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -398410,7 +422550,10 @@ "plasmid_name": "pENTR221-CAG.Pro", "sequence-type": "addgene-full", "addgene_id": "79490", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL1", @@ -398444,7 +422587,10 @@ "plasmid_name": "pENTR223-SM", "sequence-type": "addgene-full", "addgene_id": "195814", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -398473,7 +422619,6 @@ "plasmid_name": "pcDNA3.1-Nanoluc-ccdB", "sequence-type": "addgene-full", "addgene_id": "87070", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -398526,7 +422671,10 @@ "plasmid_name": "C514-E47: attB5r-Halotag-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162963", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -398556,7 +422704,10 @@ "plasmid_name": "pAG415GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14289", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -398618,7 +422769,6 @@ "plasmid_name": "pAG416GAL-SARS-CoV_PLP", "sequence-type": "addgene-full", "addgene_id": "201942", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -398671,7 +422821,10 @@ "plasmid_name": "pHAGE-GNAS-T225P", "sequence-type": "addgene-full", "addgene_id": "116406", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -398725,7 +422878,6 @@ "plasmid_name": "IDG_PANX2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161697", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -398784,7 +422936,10 @@ "plasmid_name": "pYPQ220-Ultra", "sequence-type": "addgene-full", "addgene_id": "176889", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2022.780238", + "https://www.ncbi.nlm.nih.gov/pubmed/35174354" + ], "kit": null, "att_sites": [ "attL1", @@ -398816,7 +422971,10 @@ "plasmid_name": "pDL156", "sequence-type": "addgene-full", "addgene_id": "175920", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175920.addgene-full.gb" }, @@ -398825,7 +422983,10 @@ "plasmid_name": "pLX317 PRDM14", "sequence-type": "addgene-full", "addgene_id": "193682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -398885,7 +423046,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aa3.8.4", "sequence-type": "addgene-full", "addgene_id": "136375", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL2", @@ -398916,7 +423080,10 @@ "plasmid_name": "MEN2A-V5", "sequence-type": "addgene-full", "addgene_id": "139629", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -398967,7 +423134,10 @@ "plasmid_name": "pME minprom_creERT2", "sequence-type": "addgene-full", "addgene_id": "195966", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL1", @@ -399004,7 +423174,10 @@ "plasmid_name": "pANG01", "sequence-type": "addgene-full", "addgene_id": "178083", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2021.102608", + "https://www.ncbi.nlm.nih.gov/pubmed/34801582" + ], "kit": null, "att_sites": [ "attR1", @@ -399037,7 +423210,6 @@ "plasmid_name": "p667-UBC-PKMYT1-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135247", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -399101,7 +423273,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-UD-mCherry", "sequence-type": "addgene-full", "addgene_id": "140306", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -399157,7 +423332,10 @@ "plasmid_name": "pSC27", "sequence-type": "addgene-full", "addgene_id": "104801", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104801.addgene-full.gb" }, @@ -399166,7 +423344,10 @@ "plasmid_name": "pDEST47-CYFIP1.GFP", "sequence-type": "addgene-full", "addgene_id": "109139", - "references": [], + "references": [ + "https://doi.org/10.1038/tp.2014.16", + "https://www.ncbi.nlm.nih.gov/pubmed/24667445" + ], "kit": null, "att_sites": [ "attB1", @@ -399218,7 +423399,10 @@ "plasmid_name": "pMx/ATP11C(E184Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209263", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -399254,7 +423438,6 @@ "plasmid_name": "pENTR-d4Venus", "sequence-type": "addgene-full", "addgene_id": "139552", - "references": [], "kit": null, "file": "data/addgene_plasmids/139552.addgene-full.gb" }, @@ -399263,7 +423446,10 @@ "plasmid_name": "pDONR221-SLC25A11_STOP", "sequence-type": "depositor-full", "addgene_id": "161192", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -399294,7 +423480,10 @@ "plasmid_name": "pLX307 LacZ", "sequence-type": "addgene-full", "addgene_id": "117730", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -399354,7 +423543,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0386-luc2", "sequence-type": "addgene-full", "addgene_id": "214623", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -399398,7 +423590,10 @@ "plasmid_name": "pDONR223_DDIT4_WT", "sequence-type": "addgene-full", "addgene_id": "82254", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82254.addgene-full.gb" }, @@ -399407,7 +423602,10 @@ "plasmid_name": "pDONR221-TMEM165_STOP", "sequence-type": "addgene-full", "addgene_id": "161438", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -399438,7 +423636,10 @@ "plasmid_name": "pAG303GAL-ccdB-EGFP", "sequence-type": "addgene-full", "addgene_id": "14181", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -399497,7 +423698,6 @@ "plasmid_name": "R777-E290 Hs.RPS6KA1-nostop", "sequence-type": "depositor-full", "addgene_id": "70574", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -399525,7 +423725,10 @@ "plasmid_name": "pDONR221_SLC35F2", "sequence-type": "addgene-full", "addgene_id": "132121", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132121.addgene-full.gb" }, @@ -399534,7 +423737,9 @@ "plasmid_name": "pDONR223-EGFP", "sequence-type": "addgene-full", "addgene_id": "209057", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attL1", @@ -399567,7 +423772,10 @@ "plasmid_name": "pHAGE-PIK3CA-Y1021C", "sequence-type": "addgene-full", "addgene_id": "116549", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -399621,7 +423829,10 @@ "plasmid_name": "MX01", "sequence-type": "addgene-full", "addgene_id": "158624", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abc1251", + "https://www.ncbi.nlm.nih.gov/pubmed/33158864" + ], "kit": null, "att_sites": [ "attR1", @@ -399672,7 +423883,10 @@ "plasmid_name": "pEN_TmiRc3_shNT", "sequence-type": "depositor-full", "addgene_id": "81067", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "att_sites": [ "attL1", @@ -399703,7 +423917,6 @@ "plasmid_name": "BRAF - W531C in pENTR", "sequence-type": "addgene-full", "addgene_id": "216613", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -399733,7 +423946,10 @@ "plasmid_name": "pMDJ113 - pEXP(HygroR, 5605)[Phsp-16.41 |Cre recombinase (PATCs) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159809", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -399766,7 +423982,10 @@ "plasmid_name": "pENTR223-PRDX5E80K", "sequence-type": "addgene-full", "addgene_id": "98692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "att_sites": [ "attL1", @@ -399795,7 +424014,10 @@ "plasmid_name": "pSS02:cyt-Peredox-mCherry", "sequence-type": "addgene-full", "addgene_id": "161743", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.20.00241", + "https://www.ncbi.nlm.nih.gov/pubmed/32796121" + ], "kit": null, "att_sites": [ "attB1", @@ -399840,7 +424062,6 @@ "plasmid_name": "pLgw ELK1Y158A-V5-EcoDam", "sequence-type": "addgene-full", "addgene_id": "98609", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -399893,7 +424114,10 @@ "plasmid_name": "pDONR223_OTUD6A_p.V211M", "sequence-type": "addgene-full", "addgene_id": "81366", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -399925,7 +424149,10 @@ "plasmid_name": "MAC_N_PAX8", "sequence-type": "addgene-full", "addgene_id": "167788", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -399971,7 +424198,10 @@ "plasmid_name": "pENTR-R4R3-2xmEGFP-C", "sequence-type": "addgene-full", "addgene_id": "113750", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -400006,7 +424236,10 @@ "plasmid_name": "pHAGE-PTEN-R173C", "sequence-type": "addgene-full", "addgene_id": "116632", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -400055,7 +424288,10 @@ "plasmid_name": "mNeonGreen-JIP4", "sequence-type": "addgene-full", "addgene_id": "164621", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164621.addgene-full.gb" }, @@ -400064,7 +424300,10 @@ "plasmid_name": "YFC43", "sequence-type": "addgene-full", "addgene_id": "89488", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0046907", + "https://www.ncbi.nlm.nih.gov/pubmed/23056524" + ], "kit": null, "att_sites": [ "attR1", @@ -400113,7 +424352,10 @@ "plasmid_name": "pENTR223-B-GD-RF1", "sequence-type": "addgene-full", "addgene_id": "195829", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195829.addgene-full.gb" }, @@ -400122,7 +424364,9 @@ "plasmid_name": "pDONR207-OEP7(1\u201350)", "sequence-type": "addgene-full", "addgene_id": "100601", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28634853" + ], "kit": null, "att_sites": [ "attL1", @@ -400146,7 +424390,10 @@ "plasmid_name": "pCellFree_G03 CYP2D6", "sequence-type": "addgene-full", "addgene_id": "67090", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "att_sites": [ "attB1", @@ -400184,7 +424431,10 @@ "plasmid_name": "5'-3xFLAG L3mbtl3+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212059", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -400224,7 +424474,10 @@ "plasmid_name": "pDONR221-SLC35A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161289", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -400255,7 +424508,10 @@ "plasmid_name": "BCL6-GFP R28A in Artichoke", "sequence-type": "addgene-full", "addgene_id": "169933", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2925-1", + "https://www.ncbi.nlm.nih.gov/pubmed/33208943" + ], "kit": null, "att_sites": [ "attB1", @@ -400325,7 +424581,6 @@ "plasmid_name": "R777-E156 Hs.PDGFRA-nostop", "sequence-type": "depositor-full", "addgene_id": "70440", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -400353,7 +424608,10 @@ "plasmid_name": "TFORF3022", "sequence-type": "addgene-full", "addgene_id": "144498", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -400413,7 +424671,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf7a", "sequence-type": "addgene-full", "addgene_id": "158375", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -400458,7 +424719,10 @@ "plasmid_name": "pEN_TT 3xFLAG-Linker", "sequence-type": "addgene-full", "addgene_id": "192305", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -400487,7 +424751,10 @@ "plasmid_name": "pGP8GF-ZmAFB2/3 a", "sequence-type": "addgene-full", "addgene_id": "188423", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attR2" @@ -400530,7 +424797,10 @@ "plasmid_name": "TFORF3302", "sequence-type": "addgene-full", "addgene_id": "144778", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -400590,7 +424860,10 @@ "plasmid_name": "pTol2-hsp70l:Cas9-t2A-GFP, 5xU6:sgRNA", "sequence-type": "addgene-full", "addgene_id": "108871", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt.4103", + "https://www.ncbi.nlm.nih.gov/pubmed/29608178" + ], "kit": null, "att_sites": [ "attB1", @@ -400638,7 +424911,9 @@ "plasmid_name": "pMpGWB115", "sequence-type": "depositor-full", "addgene_id": "68569", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -400689,7 +424964,10 @@ "plasmid_name": "pEBTetBl-CLIP-STIL", "sequence-type": "addgene-full", "addgene_id": "136844", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -400734,7 +425012,6 @@ "plasmid_name": "pTAU-C-DM", "sequence-type": "addgene-full", "addgene_id": "111231", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -400778,7 +425055,10 @@ "plasmid_name": "pHAGE-ERBB3-V104M", "sequence-type": "addgene-full", "addgene_id": "116363", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -400828,7 +425108,10 @@ "plasmid_name": "TFORF3381", "sequence-type": "addgene-full", "addgene_id": "144857", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -400888,7 +425171,10 @@ "plasmid_name": "pDONR221_MFSD1", "sequence-type": "addgene-full", "addgene_id": "131916", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -400919,7 +425205,10 @@ "plasmid_name": "pDEST-V2-ORF", "sequence-type": "depositor-full", "addgene_id": "73636", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaf0793", + "https://www.ncbi.nlm.nih.gov/pubmed/27405979" + ], "kit": null, "att_sites": [ "attR1", @@ -400973,7 +425262,10 @@ "plasmid_name": "actc1b-mKate2-RhoAb", "sequence-type": "addgene-full", "addgene_id": "109527", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -401015,7 +425307,10 @@ "plasmid_name": "pEntry_MERS-CoV-Envelope", "sequence-type": "addgene-full", "addgene_id": "168831", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -401044,7 +425339,10 @@ "plasmid_name": "pDONR221-SLC22A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161212", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -401075,7 +425373,10 @@ "plasmid_name": "POLD1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98358", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -401136,7 +425437,10 @@ "plasmid_name": "pNJB98", "sequence-type": "depositor-full", "addgene_id": "51520", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attL2", @@ -401168,7 +425472,10 @@ "plasmid_name": "pDONR223_SPOP_p.F133S", "sequence-type": "addgene-full", "addgene_id": "81637", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -401200,7 +425507,10 @@ "plasmid_name": "PB-TAC-EB-C5", "sequence-type": "depositor-full", "addgene_id": "80485", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "file": "data/addgene_plasmids/80485.depositor-full.gb" }, @@ -401209,7 +425519,10 @@ "plasmid_name": "pFPL-Gh", "sequence-type": "depositor-full", "addgene_id": "61648", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-05-14-0144-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/25390188" + ], "kit": null, "att_sites": [ "attR1", @@ -401258,7 +425571,9 @@ "plasmid_name": "pDONR221-FKBP1B(3of4)", "sequence-type": "addgene-full", "addgene_id": "166174", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -401289,7 +425604,10 @@ "plasmid_name": "pGCS-N1(6xMYC)", "sequence-type": "addgene-full", "addgene_id": "85718", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -401337,7 +425655,10 @@ "plasmid_name": "p3E-rab44", "sequence-type": "addgene-full", "addgene_id": "109713", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -401368,7 +425689,10 @@ "plasmid_name": "TFORF3161", "sequence-type": "addgene-full", "addgene_id": "144637", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -401428,7 +425752,10 @@ "plasmid_name": "pDEST 544-PHL2", "sequence-type": "addgene-full", "addgene_id": "118672", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -401470,7 +425797,10 @@ "plasmid_name": "pDONR223_IDH2_p.E268D", "sequence-type": "addgene-full", "addgene_id": "81403", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -401502,7 +425832,10 @@ "plasmid_name": "pMuLE ENTR CMV iRFP L3-L2", "sequence-type": "depositor-full", "addgene_id": "62159", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -401537,7 +425870,10 @@ "plasmid_name": "pEPYCdKN0010", "sequence-type": "addgene-full", "addgene_id": "196151", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attB1", @@ -401577,7 +425913,9 @@ "plasmid_name": "pPB-cT3G-cERP2-FIGLA", "sequence-type": "addgene-full", "addgene_id": "222929", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "att_sites": [ "attB1", @@ -401623,7 +425961,9 @@ "plasmid_name": "pFLIP36", "sequence-type": "depositor-full", "addgene_id": "65504", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -401663,7 +426003,10 @@ "plasmid_name": "pDONR223_RB1_WT", "sequence-type": "addgene-full", "addgene_id": "81857", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -401695,7 +426038,10 @@ "plasmid_name": "pCWXPGR-pTF-Wnt3a", "sequence-type": "addgene-full", "addgene_id": "114287", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "att_sites": [ "attB1", @@ -401755,7 +426101,10 @@ "plasmid_name": "252 pTol2-MTDest", "sequence-type": "depositor-full", "addgene_id": "73485", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -401803,7 +426152,10 @@ "plasmid_name": "pDONR221-kcnk2b", "sequence-type": "addgene-full", "addgene_id": "208984", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -401834,7 +426186,10 @@ "plasmid_name": "pExp_TRE:EBFP2", "sequence-type": "depositor-full", "addgene_id": "51793", - "references": [], + "references": [ + "https://doi.org/10.1021/sb500263b", + "https://www.ncbi.nlm.nih.gov/pubmed/25369267" + ], "kit": null, "att_sites": [ "attB1", @@ -401884,7 +426239,10 @@ "plasmid_name": "pHAGE-BRAF-G469V", "sequence-type": "addgene-full", "addgene_id": "116157", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -401939,7 +426297,6 @@ "plasmid_name": "R777-E110 Hs.IRS1-nostop", "sequence-type": "depositor-full", "addgene_id": "70394", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -401968,7 +426325,10 @@ "plasmid_name": "pCM3.35", "sequence-type": "depositor-full", "addgene_id": "19404", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19404.depositor-full.gb" }, @@ -401977,7 +426337,6 @@ "plasmid_name": "Hs.KRAS4a G12V", "sequence-type": "depositor-full", "addgene_id": "83169", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -402002,7 +426361,10 @@ "plasmid_name": "pDONR223_RASA1_WT", "sequence-type": "addgene-full", "addgene_id": "81778", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -402034,7 +426396,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway mmu SE-Irf2bpl G", "sequence-type": "addgene-full", "addgene_id": "89376", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -402088,7 +426453,10 @@ "plasmid_name": "pLenti PGK Puro DEST (w529-2)", "sequence-type": "addgene-full", "addgene_id": "19068", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -402153,7 +426521,10 @@ "plasmid_name": "pAG306GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14140", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -402209,7 +426580,10 @@ "plasmid_name": "KO901: pMVP (L5-L4) Blast-P2A", "sequence-type": "addgene-full", "addgene_id": "121715", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -402243,7 +426617,10 @@ "plasmid_name": "pDONR223_KIF2B_p.E161G", "sequence-type": "addgene-full", "addgene_id": "81498", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -402275,7 +426652,10 @@ "plasmid_name": "pDONR223_HAVCR2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82965", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -402304,7 +426684,10 @@ "plasmid_name": "TFORF3442", "sequence-type": "addgene-full", "addgene_id": "144918", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -402364,7 +426747,10 @@ "plasmid_name": "RBBP6", "sequence-type": "addgene-full", "addgene_id": "155879", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -402407,7 +426793,10 @@ "plasmid_name": "pGL2084", "sequence-type": "addgene-full", "addgene_id": "137726", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1003886", + "https://www.ncbi.nlm.nih.gov/pubmed/24453978" + ], "kit": null, "att_sites": [ "attL2", @@ -402438,7 +426827,10 @@ "plasmid_name": "pDONR223_WNK3_p.T237M", "sequence-type": "addgene-full", "addgene_id": "81691", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -402470,7 +426862,10 @@ "plasmid_name": "p8215 pHAGE N-V5 PTPN14 \u0394PPXY1/2", "sequence-type": "addgene-full", "addgene_id": "221646", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "att_sites": [ "attB1", @@ -402522,7 +426917,10 @@ "plasmid_name": "5'-3xFLAG Mef2d-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212064", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -402562,7 +426960,10 @@ "plasmid_name": "pDONR223_KEAP1_WT", "sequence-type": "addgene-full", "addgene_id": "81925", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -402594,7 +426995,10 @@ "plasmid_name": "pMXs-Klf4-IP", "sequence-type": "addgene-full", "addgene_id": "15920", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.07.024", + "https://www.ncbi.nlm.nih.gov/pubmed/16904174" + ], "kit": null, "att_sites": [ "attB1", @@ -402628,7 +427032,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp8", "sequence-type": "addgene-full", "addgene_id": "168897", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -402657,7 +427064,9 @@ "plasmid_name": "pMpGWB405", "sequence-type": "depositor-full", "addgene_id": "68670", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -402710,7 +427119,10 @@ "plasmid_name": "p3E-Rac1", "sequence-type": "addgene-full", "addgene_id": "109581", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -402741,7 +427153,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-ERBB2 NLS zeo", "sequence-type": "addgene-full", "addgene_id": "192338", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -402813,7 +427228,10 @@ "plasmid_name": "TFORF3269", "sequence-type": "addgene-full", "addgene_id": "144745", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -402873,7 +427291,10 @@ "plasmid_name": "p3E-rab10", "sequence-type": "addgene-full", "addgene_id": "109661", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -402904,7 +427325,6 @@ "plasmid_name": "pENTR223 Rab11A S20V-STOP", "sequence-type": "addgene-full", "addgene_id": "228031", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -402933,7 +427353,10 @@ "plasmid_name": "pDONR221-SLC22A23_STOP", "sequence-type": "addgene-full", "addgene_id": "161154", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -402965,7 +427388,10 @@ "plasmid_name": "pHWBF09EC", "sequence-type": "addgene-full", "addgene_id": "130829", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attL1", @@ -402999,7 +427425,10 @@ "plasmid_name": "pDONR223_FBXW7_p.R465H", "sequence-type": "addgene-full", "addgene_id": "81571", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -403031,7 +427460,10 @@ "plasmid_name": "pDONR223_SERPINB5_p.A42F", "sequence-type": "addgene-full", "addgene_id": "82738", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -403063,7 +427495,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.Q137L", "sequence-type": "addgene-full", "addgene_id": "82817", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -403092,7 +427527,10 @@ "plasmid_name": "p35S-GW-3Avi", "sequence-type": "addgene-full", "addgene_id": "127918", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-18832-8", + "https://www.ncbi.nlm.nih.gov/pubmed/33037196" + ], "kit": null, "att_sites": [ "attR1", @@ -403127,7 +427565,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Centrobin", "sequence-type": "addgene-full", "addgene_id": "136879", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -403170,7 +427611,10 @@ "plasmid_name": "pcDNA3_HTR2A-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194368", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -403227,7 +427671,6 @@ "plasmid_name": "p426 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58556", - "references": [], "kit": null, "file": "data/addgene_plasmids/58556.depositor-full.gb" }, @@ -403236,7 +427679,10 @@ "plasmid_name": "pLenti6/V5-DEST-p110 CUX1", "sequence-type": "depositor-full", "addgene_id": "100816", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2164-14-258", + "https://www.ncbi.nlm.nih.gov/pubmed/23590133" + ], "kit": null, "att_sites": [ "attB1", @@ -403295,7 +427741,10 @@ "plasmid_name": "RAB10_pLX307", "sequence-type": "addgene-full", "addgene_id": "98365", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -403355,7 +427804,10 @@ "plasmid_name": "pGCS-C2m(3xHA)", "sequence-type": "addgene-full", "addgene_id": "85725", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -403403,7 +427855,10 @@ "plasmid_name": "pMpGE_En03-gR082", "sequence-type": "addgene-full", "addgene_id": "188551", - "references": [], + "references": [ + "https://doi.org/10.5511/plantbiotechnology.22.0810a", + "https://www.ncbi.nlm.nih.gov/pubmed/37283617" + ], "kit": null, "att_sites": [ "attL1", @@ -403435,7 +427890,6 @@ "plasmid_name": "psp-161-si2(sip1090)", "sequence-type": "depositor-full", "addgene_id": "58802", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -403483,7 +427937,9 @@ "plasmid_name": "pDEST17-His10-Smt3-DDX5(kf)-SNAP", "sequence-type": "addgene-full", "addgene_id": "166149", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attB1", @@ -403521,7 +427977,10 @@ "plasmid_name": "pAG306GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14259", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -403578,7 +428037,10 @@ "plasmid_name": "pRSET-Cm-CspA2", "sequence-type": "addgene-full", "addgene_id": "215399", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2319499121", + "https://www.ncbi.nlm.nih.gov/pubmed/38814867" + ], "kit": null, "att_sites": [ "attB1", @@ -403610,7 +428072,10 @@ "plasmid_name": "IG806: pMVP (L3-L2) pA; RIP::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121807", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -403648,7 +428113,10 @@ "plasmid_name": "pcDNA5/FRT/TO-TRPT1", "sequence-type": "addgene-full", "addgene_id": "184244", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac711", + "https://www.ncbi.nlm.nih.gov/pubmed/36018800" + ], "kit": null, "att_sites": [ "attB1", @@ -403690,7 +428158,10 @@ "plasmid_name": "pME-APEX2-NS", "sequence-type": "depositor-full", "addgene_id": "67669", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attL1", @@ -403723,7 +428194,9 @@ "plasmid_name": "pPB-cT3G-cERP2-HMGB3", "sequence-type": "addgene-full", "addgene_id": "222540", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222540.addgene-full.gb" }, @@ -403732,7 +428205,10 @@ "plasmid_name": "pGBKT7-GW", "sequence-type": "addgene-full", "addgene_id": "61703", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2009.04048.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19843313" + ], "kit": null, "att_sites": [ "attR1", @@ -403786,7 +428262,10 @@ "plasmid_name": "p7139 pHAGE-P-CMVt-N-HA-GAW-PHKG2", "sequence-type": "addgene-full", "addgene_id": "100159", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -403838,7 +428317,10 @@ "plasmid_name": "A1-LCD-14N-4Q+18G", "sequence-type": "addgene-full", "addgene_id": "178694", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -403873,7 +428355,10 @@ "plasmid_name": "pQLinkHD-SYNZIP1", "sequence-type": "addgene-full", "addgene_id": "80647", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "att_sites": [ "attB1", @@ -403922,7 +428407,6 @@ "plasmid_name": "pLEX_305", "sequence-type": "addgene-full", "addgene_id": "41390", - "references": [], "kit": null, "file": "data/addgene_plasmids/41390.addgene-full.gb" }, @@ -403931,7 +428415,10 @@ "plasmid_name": "pEntry_HCoV-OC43-Hemagglutinin-esterase", "sequence-type": "addgene-full", "addgene_id": "168943", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -403960,7 +428447,10 @@ "plasmid_name": "TFORF3095", "sequence-type": "addgene-full", "addgene_id": "144571", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -404020,7 +428510,10 @@ "plasmid_name": "pJOG562", "sequence-type": "addgene-full", "addgene_id": "105340", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -404061,7 +428554,10 @@ "plasmid_name": "pDONR223_TCF7L2_WT", "sequence-type": "addgene-full", "addgene_id": "81745", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -404093,7 +428589,10 @@ "plasmid_name": "pMMACE DEST CMV H2B iRFP", "sequence-type": "addgene-full", "addgene_id": "206253", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attR1", @@ -404129,7 +428628,10 @@ "plasmid_name": "pID3.01B", "sequence-type": "depositor-full", "addgene_id": "22720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2005.11.046", + "https://www.ncbi.nlm.nih.gov/pubmed/16499902" + ], "kit": null, "att_sites": [ "attR1", @@ -404173,7 +428675,9 @@ "plasmid_name": "pME-Myc-BioID2-MCS1 (JDW 1095)", "sequence-type": "addgene-full", "addgene_id": "224510", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -404207,7 +428711,10 @@ "plasmid_name": "R620-M15-303: CMV51p> SARS-CoV-2 S(1-1213)-2P-T4f-His6 D614G", "sequence-type": "addgene-full", "addgene_id": "170201", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -404262,7 +428769,10 @@ "plasmid_name": "pDONR221-SLC5A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161360", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -404293,7 +428803,10 @@ "plasmid_name": "pDONR221-SLC37A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161080", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -404324,7 +428837,10 @@ "plasmid_name": "pDONR223_LAP3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82958", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -404353,7 +428869,10 @@ "plasmid_name": "pDONR223_NKX2-1", "sequence-type": "addgene-full", "addgene_id": "221472", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221472.addgene-full.gb" }, @@ -404362,7 +428881,10 @@ "plasmid_name": "HE302: pMVP (L5-L4) RIP", "sequence-type": "addgene-full", "addgene_id": "121728", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -404393,7 +428915,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-wt", "sequence-type": "depositor-full", "addgene_id": "46709", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -404443,7 +428968,10 @@ "plasmid_name": "pMartini Gate A R2-R1", "sequence-type": "depositor-full", "addgene_id": "36428", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "att_sites": [ "attR1", @@ -404482,7 +429010,10 @@ "plasmid_name": "TFORF3215", "sequence-type": "addgene-full", "addgene_id": "144691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -404542,7 +429073,10 @@ "plasmid_name": "pDONR221-SLC22A20P_STOP", "sequence-type": "depositor-full", "addgene_id": "161142", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -404574,7 +429108,10 @@ "plasmid_name": "TFORF3449", "sequence-type": "addgene-full", "addgene_id": "144925", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -404634,7 +429171,10 @@ "plasmid_name": "pHAGE-BRAF-Y656D", "sequence-type": "addgene-full", "addgene_id": "116211", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -404689,7 +429229,10 @@ "plasmid_name": "pDONR223_CCNH_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82956", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -404718,7 +429261,10 @@ "plasmid_name": "IH401: pMVP (L5-L4) CMV promoter", "sequence-type": "addgene-full", "addgene_id": "121726", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -404753,7 +429299,10 @@ "plasmid_name": "pXL-CAG-LAP2-NLG1", "sequence-type": "depositor-full", "addgene_id": "43924", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0052823", + "https://www.ncbi.nlm.nih.gov/pubmed/23457442" + ], "kit": null, "att_sites": [ "attB1", @@ -404798,7 +429347,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP2_nostop", "sequence-type": "addgene-full", "addgene_id": "168519", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -404827,7 +429379,9 @@ "plasmid_name": "p3E-CFP-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82591", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -404863,7 +429417,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK14_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158172", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -404929,7 +429482,10 @@ "plasmid_name": "pCENTR_MGGAGM", "sequence-type": "addgene-full", "addgene_id": "216145", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attL1", @@ -404959,7 +429515,10 @@ "plasmid_name": "pMLS262", "sequence-type": "depositor-full", "addgene_id": "73718", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.184275", + "https://www.ncbi.nlm.nih.gov/pubmed/26837755" + ], "kit": null, "att_sites": [ "attB1", @@ -404994,7 +429553,10 @@ "plasmid_name": "pEntry_MERS-CoV-ORF4b", "sequence-type": "depositor-full", "addgene_id": "168829", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -405023,7 +429585,10 @@ "plasmid_name": "pDONR-IAA8_no stop", "sequence-type": "depositor-full", "addgene_id": "83874", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -405054,7 +429619,10 @@ "plasmid_name": "WT-short-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "192102", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "att_sites": [ "attB1", @@ -405104,7 +429672,10 @@ "plasmid_name": "pYPQ152", "sequence-type": "addgene-full", "addgene_id": "69303", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69303.addgene-full.gb" }, @@ -405113,7 +429684,9 @@ "plasmid_name": "p3E-SGTAP no-pA", "sequence-type": "addgene-full", "addgene_id": "82599", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -405146,7 +429719,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NIM1K_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189892", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -405212,7 +429784,6 @@ "plasmid_name": "pMK33-V5-TurboID-GW", "sequence-type": "addgene-full", "addgene_id": "196282", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -405249,7 +429820,10 @@ "plasmid_name": "p7141 pHAGE-P-CMVt-N-HA-GAW-MUS81", "sequence-type": "addgene-full", "addgene_id": "100157", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -405301,7 +429875,10 @@ "plasmid_name": "pDONR223_ZNF454_WT", "sequence-type": "addgene-full", "addgene_id": "81864", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -405333,7 +429910,10 @@ "plasmid_name": "pHAGE-BRAF-H585Y", "sequence-type": "addgene-full", "addgene_id": "116164", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -405388,7 +429968,10 @@ "plasmid_name": "CSTF1", "sequence-type": "addgene-full", "addgene_id": "155485", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -405431,7 +430014,10 @@ "plasmid_name": "pAC1808_pmax-RBFOX1N-FRB-C", "sequence-type": "addgene-full", "addgene_id": "118641", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attB1", @@ -405461,7 +430047,10 @@ "plasmid_name": "TFORF3128", "sequence-type": "addgene-full", "addgene_id": "144604", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -405521,7 +430110,10 @@ "plasmid_name": "p3E-rab6a", "sequence-type": "addgene-full", "addgene_id": "109720", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -405552,7 +430144,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 ORF4_nostop", "sequence-type": "addgene-full", "addgene_id": "168582", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -405581,7 +430176,9 @@ "plasmid_name": "pDEST17-His10-Smt3-ccdB", "sequence-type": "addgene-full", "addgene_id": "166147", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attR1", @@ -405622,7 +430219,10 @@ "plasmid_name": "pHAGE-EGFR-P596L", "sequence-type": "addgene-full", "addgene_id": "116284", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -405672,7 +430272,10 @@ "plasmid_name": "KA401: pMVP (L3-L2) pA; RIP::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121809", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -405706,7 +430309,10 @@ "plasmid_name": "pDONR223_SGK1_p.A48G", "sequence-type": "addgene-full", "addgene_id": "81430", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -405738,7 +430344,10 @@ "plasmid_name": "pAG303-Gal-PA50", "sequence-type": "addgene-full", "addgene_id": "84906", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "att_sites": [ "attB1", @@ -405791,7 +430400,10 @@ "plasmid_name": "TFORF2954", "sequence-type": "addgene-full", "addgene_id": "144430", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -405851,7 +430463,10 @@ "plasmid_name": "actc1b-mKate2-EHD1b", "sequence-type": "addgene-full", "addgene_id": "109514", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -405893,7 +430508,10 @@ "plasmid_name": "pDONR223_AKT1_p.L52R", "sequence-type": "addgene-full", "addgene_id": "81604", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -405926,7 +430544,10 @@ "plasmid_name": "pCMB-PLAr", "sequence-type": "depositor-full", "addgene_id": "61201", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -405971,7 +430592,10 @@ "plasmid_name": "pDONR221-SLC25A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161221", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -406002,7 +430626,10 @@ "plasmid_name": "pDONR221-SLC20A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161188", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -406033,7 +430660,10 @@ "plasmid_name": "pDONR223_MYC_p.E366Q", "sequence-type": "addgene-full", "addgene_id": "82819", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -406063,7 +430693,10 @@ "plasmid_name": "pEBTetBl-CLIP-ALMS1", "sequence-type": "addgene-full", "addgene_id": "136877", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -406107,7 +430740,10 @@ "plasmid_name": "pLDPuro-hsnSR100N", "sequence-type": "addgene-full", "addgene_id": "35172", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2011.08.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21884984" + ], "kit": null, "att_sites": [ "attB1", @@ -406172,7 +430808,10 @@ "plasmid_name": "pDONR221_SLC7A1", "sequence-type": "addgene-full", "addgene_id": "131925", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -406203,7 +430842,6 @@ "plasmid_name": "plix403-V5-N-mEGFP", "sequence-type": "addgene-full", "addgene_id": "223957", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -406268,7 +430906,6 @@ "plasmid_name": "pLenti6.3/NS4A", "sequence-type": "addgene-full", "addgene_id": "120844", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -406327,7 +430964,10 @@ "plasmid_name": "TFORF3388", "sequence-type": "addgene-full", "addgene_id": "144864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -406387,7 +431027,10 @@ "plasmid_name": "pcDNA3_HTR2A-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194366", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -406444,7 +431087,10 @@ "plasmid_name": "pHAGE-ERBB2-S310Y", "sequence-type": "addgene-full", "addgene_id": "116350", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -406494,7 +431140,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-IBB zeo", "sequence-type": "addgene-full", "addgene_id": "192336", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -406566,7 +431215,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 E 27nt-del_nostop", "sequence-type": "addgene-full", "addgene_id": "153955", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -406590,7 +431242,10 @@ "plasmid_name": "pLD-puro-Cc-PARK7WT-VA", "sequence-type": "addgene-full", "addgene_id": "115182", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attB1", @@ -406652,7 +431307,10 @@ "plasmid_name": "pHWBF06EC", "sequence-type": "addgene-full", "addgene_id": "130827", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attL1", @@ -406685,7 +431343,10 @@ "plasmid_name": "pDONR223_RIT1_WT", "sequence-type": "addgene-full", "addgene_id": "82882", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -406714,7 +431375,10 @@ "plasmid_name": "pDONR223_SERPINB5_p.A7T", "sequence-type": "addgene-full", "addgene_id": "82736", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -406746,7 +431410,10 @@ "plasmid_name": "p8189 pHAGE N-V5 PTPN14 C1121S", "sequence-type": "addgene-full", "addgene_id": "221648", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "att_sites": [ "attB1", @@ -406798,7 +431465,6 @@ "plasmid_name": "R777-E236 Hs.RASAL2-nostop", "sequence-type": "depositor-full", "addgene_id": "70520", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -406826,7 +431492,10 @@ "plasmid_name": "pAG423GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14293", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -406889,7 +431558,6 @@ "plasmid_name": "pBABEpuro-CRAF_S259A", "sequence-type": "depositor-full", "addgene_id": "51127", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -406920,7 +431588,10 @@ "plasmid_name": "pGwf", "sequence-type": "depositor-full", "addgene_id": "22517", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "att_sites": [ "attR1", @@ -406963,7 +431634,9 @@ "plasmid_name": "pTF101.1gw1", "sequence-type": "addgene-full", "addgene_id": "134768", - "references": [], + "references": [ + "https://doi.org/10.1023/B%3AEUPH.0000030669.75809.dc" + ], "kit": null, "att_sites": [ "attR2" @@ -407006,7 +431679,10 @@ "plasmid_name": "pIRIGF-IKZF1-V2", "sequence-type": "addgene-full", "addgene_id": "69045", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -407041,7 +431717,10 @@ "plasmid_name": "pDONR223_KEAP1_p.S45F", "sequence-type": "addgene-full", "addgene_id": "81496", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -407073,7 +431752,10 @@ "plasmid_name": "pHAGE-CDKN2A-L78Hfs*41", "sequence-type": "addgene-full", "addgene_id": "116222", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -407127,7 +431809,10 @@ "plasmid_name": "RALYL-1", "sequence-type": "addgene-full", "addgene_id": "155877", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -407170,7 +431855,10 @@ "plasmid_name": "TFORF3440", "sequence-type": "addgene-full", "addgene_id": "144916", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -407230,7 +431918,10 @@ "plasmid_name": "TFORF3066", "sequence-type": "addgene-full", "addgene_id": "144542", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -407290,7 +431981,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp13", "sequence-type": "addgene-full", "addgene_id": "168970", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -407319,7 +432013,9 @@ "plasmid_name": "pDONR221-PSMD11", "sequence-type": "addgene-full", "addgene_id": "166201", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -407351,7 +432047,10 @@ "plasmid_name": "pDONR221-SLC9A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161353", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161353.addgene-full.gb" }, @@ -407360,7 +432059,10 @@ "plasmid_name": "pYPQCas12j2", "sequence-type": "addgene-full", "addgene_id": "189780", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2022.100453", + "https://www.ncbi.nlm.nih.gov/pubmed/36127876" + ], "kit": null, "att_sites": [ "attL1", @@ -407392,7 +432094,9 @@ "plasmid_name": "pME-DreERT2 (JDW 1344)", "sequence-type": "addgene-full", "addgene_id": "224523", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -407426,7 +432130,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-SART1", "sequence-type": "depositor-full", "addgene_id": "38087", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -407472,7 +432179,10 @@ "plasmid_name": "pLenti PGK Hygro DEST (w530-1)", "sequence-type": "addgene-full", "addgene_id": "19066", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -407535,7 +432245,10 @@ "plasmid_name": "pMMK ENTR 1", "sequence-type": "addgene-full", "addgene_id": "206260", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL1", @@ -407556,7 +432269,10 @@ "plasmid_name": "pDONR223_CDK17_WT", "sequence-type": "addgene-full", "addgene_id": "81776", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -407588,7 +432304,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway mmu SE-Irf2bpl I", "sequence-type": "addgene-full", "addgene_id": "89378", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -407642,7 +432361,10 @@ "plasmid_name": "pDEST-mCherry-LacR-PALB2", "sequence-type": "depositor-full", "addgene_id": "71112", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71112.depositor-full.gb" }, @@ -407651,7 +432373,10 @@ "plasmid_name": "pDONR223_PIK3R4_WT", "sequence-type": "addgene-full", "addgene_id": "81859", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -407683,7 +432408,10 @@ "plasmid_name": "pGA2ox2:GUS", "sequence-type": "addgene-full", "addgene_id": "108564", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "att_sites": [ "attB1", @@ -407727,7 +432455,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SMAD4", "sequence-type": "addgene-full", "addgene_id": "222573", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -407773,7 +432503,10 @@ "plasmid_name": "pFRm43GW", "sequence-type": "addgene-full", "addgene_id": "133748", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "att_sites": [ "attR3", @@ -407814,7 +432547,6 @@ "plasmid_name": "pCWXPGR-pTF-EpoR", "sequence-type": "addgene-full", "addgene_id": "114289", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -407874,7 +432606,10 @@ "plasmid_name": "pFRT/FLAG/HA MOV10 D645N", "sequence-type": "depositor-full", "addgene_id": "51717", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.03.017", + "https://www.ncbi.nlm.nih.gov/pubmed/24726324" + ], "kit": null, "file": "data/addgene_plasmids/51717.depositor-full.gb" }, @@ -407883,7 +432618,6 @@ "plasmid_name": "R777-E026 Hs.CDK6-nostop", "sequence-type": "depositor-full", "addgene_id": "70310", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -407911,7 +432645,10 @@ "plasmid_name": "pHAGE-BRAF-G596S", "sequence-type": "addgene-full", "addgene_id": "116159", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -407966,7 +432703,10 @@ "plasmid_name": "pEF-ENTR B (708-1)", "sequence-type": "depositor-full", "addgene_id": "17428", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -407997,7 +432737,10 @@ "plasmid_name": "TFORF3163", "sequence-type": "addgene-full", "addgene_id": "144639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -408057,7 +432800,10 @@ "plasmid_name": "KZ501: pMVP (L3-L2) P2A-Puro + polyA", "sequence-type": "addgene-full", "addgene_id": "121780", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -408092,7 +432838,10 @@ "plasmid_name": "KO401: pMAGIC (R4-R3) NLS-x Cas9(3.7)-NLS", "sequence-type": "addgene-full", "addgene_id": "121834", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -408127,7 +432876,10 @@ "plasmid_name": "pGWB427", "sequence-type": "depositor-full", "addgene_id": "74821", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -408177,7 +432929,10 @@ "plasmid_name": "pAG416GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14339", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -408239,7 +432994,10 @@ "plasmid_name": "Luc-Hdm4-3'UTR-F2d5", "sequence-type": "depositor-full", "addgene_id": "64018", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.233585.113", + "https://www.ncbi.nlm.nih.gov/pubmed/24532687" + ], "kit": null, "att_sites": [ "attB1", @@ -408273,7 +433031,9 @@ "plasmid_name": "pPB-cT3G-cERP2-DLX5", "sequence-type": "addgene-full", "addgene_id": "222927", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "att_sites": [ "attB1", @@ -408319,7 +433079,10 @@ "plasmid_name": "actc1b-mKate2-Rac1", "sequence-type": "addgene-full", "addgene_id": "109529", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -408361,7 +433124,10 @@ "plasmid_name": "pCFJ352 - MCS(ttTi4348, I)", "sequence-type": "depositor-full", "addgene_id": "34868", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attB1", @@ -408394,7 +433160,10 @@ "plasmid_name": "pENT-L3-pFOGl-L5", "sequence-type": "depositor-full", "addgene_id": "186364", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL3", @@ -408425,7 +433194,10 @@ "plasmid_name": "LIIc R 3-4", "sequence-type": "depositor-full", "addgene_id": "54370", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "att_sites": [ "attR1", @@ -408457,7 +433229,10 @@ "plasmid_name": "pSLIK-IDH1-FLAG", "sequence-type": "addgene-full", "addgene_id": "66802", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + ], "kit": null, "att_sites": [ "attB1", @@ -408523,7 +433298,6 @@ "plasmid_name": "pDEST-Spe4-RfA-mScarlet-I-stop", "sequence-type": "addgene-full", "addgene_id": "186393", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -408570,7 +433344,10 @@ "plasmid_name": "pDONR221-kcnj8", "sequence-type": "addgene-full", "addgene_id": "173134", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -408601,7 +433378,10 @@ "plasmid_name": "pDONR223_OR2M2_p.V117I", "sequence-type": "addgene-full", "addgene_id": "81639", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -408633,7 +433413,10 @@ "plasmid_name": "pDONR223_KEAP1_p.S144F", "sequence-type": "addgene-full", "addgene_id": "82790", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -408662,7 +433445,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.H1047R", "sequence-type": "addgene-full", "addgene_id": "82824", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -408691,7 +433477,10 @@ "plasmid_name": "TFORF3383", "sequence-type": "addgene-full", "addgene_id": "144859", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -408751,7 +433540,6 @@ "plasmid_name": "R777-E355 Hs.TSC2", "sequence-type": "depositor-full", "addgene_id": "70639", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -408778,7 +433566,10 @@ "plasmid_name": "pDONR221_MPC1L", "sequence-type": "addgene-full", "addgene_id": "131918", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -408809,7 +433600,10 @@ "plasmid_name": "actc1b-mKate2-rab6a", "sequence-type": "addgene-full", "addgene_id": "109652", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -408851,7 +433645,10 @@ "plasmid_name": "pMSCV-SMYD2 F184A", "sequence-type": "addgene-full", "addgene_id": "85659", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.275529.115", + "https://www.ncbi.nlm.nih.gov/pubmed/26988419" + ], "kit": null, "att_sites": [ "attB1", @@ -408893,7 +433690,10 @@ "plasmid_name": "TFORF3300", "sequence-type": "addgene-full", "addgene_id": "144776", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -408952,7 +433752,10 @@ "plasmid_name": "pDONR221_SLC25A47", "sequence-type": "addgene-full", "addgene_id": "131983", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -408983,7 +433786,10 @@ "plasmid_name": "pDONR223_PIK3CG_p.V168M", "sequence-type": "addgene-full", "addgene_id": "81542", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -409016,7 +433822,10 @@ "plasmid_name": "pDONR221-SLC22A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161167", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -409047,7 +433856,10 @@ "plasmid_name": "5'-3xFLAG Gse1+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212057", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -409088,7 +433900,9 @@ "plasmid_name": "pcDNA3.2-DEST-MatryoshCaMP6s", "sequence-type": "addgene-full", "addgene_id": "100025", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "att_sites": [ "attB1", @@ -409144,7 +433958,10 @@ "plasmid_name": "pDONR221-SLC35F2_STOP", "sequence-type": "addgene-full", "addgene_id": "161287", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -409175,7 +433992,10 @@ "plasmid_name": "pE6c", "sequence-type": "depositor-full", "addgene_id": "17466", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -409203,7 +434023,10 @@ "plasmid_name": "p3E_GGWDest+", "sequence-type": "depositor-full", "addgene_id": "49317", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -409239,7 +434062,10 @@ "plasmid_name": "pAG305GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14377", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -409298,7 +434124,10 @@ "plasmid_name": "TFORF3020", "sequence-type": "addgene-full", "addgene_id": "144496", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -409359,7 +434188,10 @@ "plasmid_name": "pSLIK-Venus", "sequence-type": "depositor-full", "addgene_id": "25734", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0606179103", + "https://www.ncbi.nlm.nih.gov/pubmed/16945906" + ], "kit": null, "att_sites": [ "attR1", @@ -409430,7 +434262,10 @@ "plasmid_name": "pGC162", "sequence-type": "depositor-full", "addgene_id": "19633", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -409475,7 +434310,10 @@ "plasmid_name": "pDestTol2pA2-LA-nanoLuc-RA", "sequence-type": "addgene-full", "addgene_id": "128692", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11259-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31366908" + ], "kit": null, "att_sites": [ "attB1", @@ -409516,7 +434354,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-Blast", "sequence-type": "addgene-full", "addgene_id": "158551", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -409578,7 +434415,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-4", "sequence-type": "depositor-full", "addgene_id": "46713", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -409628,7 +434468,10 @@ "plasmid_name": "pENTR223-BLLF3", "sequence-type": "addgene-full", "addgene_id": "195793", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -409657,7 +434500,10 @@ "plasmid_name": "C513-E08: attB5r-H6-MBP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162950", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -409692,7 +434538,10 @@ "plasmid_name": "pDONR221-SLC25A25_STOP", "sequence-type": "depositor-full", "addgene_id": "161158", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -409723,7 +434572,10 @@ "plasmid_name": "pENTR223-EBNA1", "sequence-type": "addgene-full", "addgene_id": "195827", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -409753,7 +434605,10 @@ "plasmid_name": "pDEST40-CES2C-\u0394C", "sequence-type": "addgene-full", "addgene_id": "200555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2023.04.011", + "https://www.ncbi.nlm.nih.gov/pubmed/37141889" + ], "kit": null, "att_sites": [ "attB1", @@ -409805,7 +434660,10 @@ "plasmid_name": "PRMT2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176953", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -409857,7 +434715,10 @@ "plasmid_name": "pDONR223_C15orf23_p.P26S", "sequence-type": "addgene-full", "addgene_id": "81368", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -409890,7 +434751,10 @@ "plasmid_name": "pLenti6-H2B-mCherry", "sequence-type": "addgene-full", "addgene_id": "89766", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.194662", + "https://www.ncbi.nlm.nih.gov/pubmed/28232523" + ], "kit": null, "att_sites": [ "attB1", @@ -409952,7 +434816,10 @@ "plasmid_name": "pDONR223_FGFR3_WT", "sequence-type": "addgene-full", "addgene_id": "82121", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -409981,7 +434848,6 @@ "plasmid_name": "g13s pD47", "sequence-type": "addgene-full", "addgene_id": "117445", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -410033,7 +434899,10 @@ "plasmid_name": "pLgw ELK4-V5-EcoDam", "sequence-type": "addgene-full", "addgene_id": "98607", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attB1", @@ -410086,7 +434955,10 @@ "plasmid_name": "pCBP60g-NLS-3xmCitrine", "sequence-type": "addgene-full", "addgene_id": "192521", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.112676", + "https://www.ncbi.nlm.nih.gov/pubmed/37342910" + ], "kit": null, "att_sites": [ "attB1", @@ -410131,7 +435003,10 @@ "plasmid_name": "pDONR221_SLC45A2", "sequence-type": "addgene-full", "addgene_id": "132254", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -410162,7 +435037,10 @@ "plasmid_name": "pHAGE-PIK3CA-V344G", "sequence-type": "addgene-full", "addgene_id": "116547", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -410212,7 +435090,6 @@ "plasmid_name": "pAG416GAL10-HTLV_PR", "sequence-type": "addgene-full", "addgene_id": "203467", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -410261,7 +435138,10 @@ "plasmid_name": "pCFJ1532 - pEXP[Psmu-1 | mosase (PATCs) | smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159807", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -410294,7 +435174,10 @@ "plasmid_name": "pDONR_P2R-P3_R2-miniTurbo-NES-mVenus-STOP-L3", "sequence-type": "addgene-full", "addgene_id": "127355", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127355.addgene-full.gb" }, @@ -410303,7 +435186,10 @@ "plasmid_name": "pAG416GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14243", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -410362,7 +435248,10 @@ "plasmid_name": "pENTR-L1-SYN-L4", "sequence-type": "depositor-full", "addgene_id": "32583", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL1", @@ -410393,7 +435282,9 @@ "plasmid_name": "pMpGWB233", "sequence-type": "depositor-full", "addgene_id": "68624", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -410444,7 +435335,10 @@ "plasmid_name": "pME-BTK-PH", "sequence-type": "depositor-full", "addgene_id": "67673", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attL1", @@ -410476,7 +435370,9 @@ "plasmid_name": "pcDNA5-miniTurbo-EGFP", "sequence-type": "addgene-full", "addgene_id": "209059", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attB1", @@ -410523,7 +435419,6 @@ "plasmid_name": "p667-UBC-TLK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135249", - "references": [], "kit": null, "file": "data/addgene_plasmids/135249.addgene-full.gb" }, @@ -410532,7 +435427,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S32", "sequence-type": "addgene-full", "addgene_id": "140308", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -410584,7 +435482,10 @@ "plasmid_name": "pDONR221-ETV3", "sequence-type": "addgene-full", "addgene_id": "88804", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -410615,7 +435516,10 @@ "plasmid_name": "pDONR223-AURKB", "sequence-type": "addgene-full", "addgene_id": "23682", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -410648,7 +435552,10 @@ "plasmid_name": "pHAGE-PIK3CA-G106R", "sequence-type": "addgene-full", "addgene_id": "116493", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -410702,7 +435609,10 @@ "plasmid_name": "pHAGE-PIK3CD", "sequence-type": "addgene-full", "addgene_id": "116773", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -410752,7 +435662,10 @@ "plasmid_name": "hCas9-VPR", "sequence-type": "depositor-full", "addgene_id": "68497", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3580", + "https://www.ncbi.nlm.nih.gov/pubmed/26344044" + ], "kit": null, "att_sites": [ "attB1", @@ -410806,7 +435719,10 @@ "plasmid_name": "458 p3E-2A-EGFP-CAAXpA", "sequence-type": "addgene-full", "addgene_id": "195968", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL3", @@ -410844,7 +435760,10 @@ "plasmid_name": "pENTR D-TOPO-C3_11", "sequence-type": "depositor-full", "addgene_id": "60260", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -410875,7 +435794,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL1 G116A", "sequence-type": "addgene-full", "addgene_id": "123101", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -410919,7 +435841,10 @@ "plasmid_name": "pDONR221_SLC36A3", "sequence-type": "addgene-full", "addgene_id": "132060", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -410950,7 +435875,10 @@ "plasmid_name": "pZA7", "sequence-type": "addgene-full", "addgene_id": "158485", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -410980,7 +435908,10 @@ "plasmid_name": "RET-V5", "sequence-type": "addgene-full", "addgene_id": "139627", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -411031,7 +435962,6 @@ "plasmid_name": "pDONR221-hmgn6", "sequence-type": "addgene-full", "addgene_id": "192715", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -411062,7 +435992,10 @@ "plasmid_name": "Tol2-lyzC-mcherry-2a-CDK2", "sequence-type": "addgene-full", "addgene_id": "121131", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1905221116", + "https://www.ncbi.nlm.nih.gov/pubmed/31451657" + ], "kit": null, "att_sites": [ "attB1", @@ -411108,7 +436041,10 @@ "plasmid_name": "pcDNA5FRT/TO-YOD1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113483", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -411152,7 +436088,10 @@ "plasmid_name": "GFP-BAZ2A", "sequence-type": "addgene-full", "addgene_id": "65373", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -411205,7 +436144,10 @@ "plasmid_name": "pHAGE-PIK3R1-Q302*", "sequence-type": "addgene-full", "addgene_id": "116601", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -411256,7 +436198,10 @@ "plasmid_name": "TIAM1_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53867", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "att_sites": [ "attB1", @@ -411295,7 +436240,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-WWC2", "sequence-type": "addgene-full", "addgene_id": "172995", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -411340,7 +436288,10 @@ "plasmid_name": "pMXs-ms-c-Myc-L420P", "sequence-type": "depositor-full", "addgene_id": "50776", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "att_sites": [ "attB1", @@ -411368,7 +436319,10 @@ "plasmid_name": "pDONR221_SLC39A9", "sequence-type": "addgene-full", "addgene_id": "132189", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -411399,7 +436353,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp4", "sequence-type": "depositor-full", "addgene_id": "168953", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -411428,7 +436385,10 @@ "plasmid_name": "Flag-HA-USP52", "sequence-type": "addgene-full", "addgene_id": "22589", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -411473,7 +436433,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 N637A", "sequence-type": "addgene-full", "addgene_id": "175773", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -411526,7 +436489,10 @@ "plasmid_name": "pBullet-er-n", "sequence-type": "depositor-full", "addgene_id": "53067", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -411563,7 +436529,10 @@ "plasmid_name": "MAC_C_ROS1", "sequence-type": "addgene-full", "addgene_id": "187766", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -411608,7 +436577,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.A137E", "sequence-type": "addgene-full", "addgene_id": "81355", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -411640,7 +436612,10 @@ "plasmid_name": "pQLinkHD-SYNZIP6", "sequence-type": "depositor-full", "addgene_id": "80662", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "att_sites": [ "attB1", @@ -411676,7 +436651,10 @@ "plasmid_name": "pLentiPGK Hygro DEST H2B-mCerulean3", "sequence-type": "addgene-full", "addgene_id": "90234", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "att_sites": [ "attB1", @@ -411740,7 +436718,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK33_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170611", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -411806,7 +436783,10 @@ "plasmid_name": "MNEAP1ec", "sequence-type": "addgene-full", "addgene_id": "131020", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "att_sites": [ "attL1", @@ -411840,7 +436820,10 @@ "plasmid_name": "pDONR221_MFSD2B", "sequence-type": "addgene-full", "addgene_id": "132269", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -411871,7 +436854,6 @@ "plasmid_name": "Hs.NRAS", "sequence-type": "depositor-full", "addgene_id": "83173", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -411896,7 +436878,10 @@ "plasmid_name": "pYPQ203 (pMDC32-Ubi1)", "sequence-type": "addgene-full", "addgene_id": "86207", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "att_sites": [ "attR1", @@ -411944,7 +436929,6 @@ "plasmid_name": "CTNNB1 - R565C in pENTR", "sequence-type": "addgene-full", "addgene_id": "216620", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -411974,7 +436958,10 @@ "plasmid_name": "pDONR221-SLC35B4_STOP", "sequence-type": "depositor-full", "addgene_id": "161241", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -412005,7 +436992,10 @@ "plasmid_name": "pENTR-AIF", "sequence-type": "addgene-full", "addgene_id": "16182", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.03.032", + "https://www.ncbi.nlm.nih.gov/pubmed/16713569" + ], "kit": null, "att_sites": [ "attL1", @@ -412034,7 +437024,10 @@ "plasmid_name": "pPA-RL-FL", "sequence-type": "depositor-full", "addgene_id": "78863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "att_sites": [ "attB1", @@ -412088,7 +437081,10 @@ "plasmid_name": "pDONR223_FGFR3_K650E", "sequence-type": "addgene-full", "addgene_id": "82187", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -412117,7 +437113,10 @@ "plasmid_name": "pDONR TDP43 WT YFP", "sequence-type": "addgene-full", "addgene_id": "27470", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0802082105", + "https://www.ncbi.nlm.nih.gov/pubmed/18434538" + ], "kit": null, "att_sites": [ "attL1", @@ -412152,7 +437151,6 @@ "plasmid_name": "Phage-PGK-GFP-T(WT)", "sequence-type": "addgene-full", "addgene_id": "181736", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -412203,7 +437201,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-Turbo-YFP-NLS", "sequence-type": "addgene-full", "addgene_id": "127368", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attB1", @@ -412251,7 +437252,10 @@ "plasmid_name": "pCSDest", "sequence-type": "depositor-full", "addgene_id": "22423", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -412295,7 +437299,10 @@ "plasmid_name": "pDONR223_DVL3_WT", "sequence-type": "addgene-full", "addgene_id": "82267", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -412325,7 +437332,10 @@ "plasmid_name": "pcDNA3_EGFR-NTEV-tcs-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "214610", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -412382,7 +437392,10 @@ "plasmid_name": "pMuLE ENTR CMV eGFP L3-L2", "sequence-type": "depositor-full", "addgene_id": "62143", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -412420,7 +437433,10 @@ "plasmid_name": "pSC43", "sequence-type": "depositor-full", "addgene_id": "104817", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "att_sites": [ "attB1", @@ -412471,7 +437487,10 @@ "plasmid_name": "pDONR221_SLC32A1", "sequence-type": "addgene-full", "addgene_id": "132112", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -412502,7 +437521,10 @@ "plasmid_name": "pDONR223 LC3B G120A", "sequence-type": "addgene-full", "addgene_id": "123073", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -412532,7 +437554,6 @@ "plasmid_name": "R777-E130 Hs.MDM2-nostop", "sequence-type": "depositor-full", "addgene_id": "70414", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -412560,7 +437581,10 @@ "plasmid_name": "HJP-195-IVS-Syn21-gp41-1C-CreB-NrdJ-1N-WPREUw", "sequence-type": "addgene-full", "addgene_id": "162476", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "att_sites": [ "attR1", @@ -412596,7 +437620,6 @@ "plasmid_name": "pHAGE-CMV-Flag-hcRed_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135274", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -412650,7 +437673,10 @@ "plasmid_name": "pSC12", "sequence-type": "addgene-full", "addgene_id": "104786", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "att_sites": [ "attL1", @@ -412685,7 +437711,10 @@ "plasmid_name": "Active Wnt3A-V5", "sequence-type": "depositor-full", "addgene_id": "43810", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -412733,7 +437762,6 @@ "plasmid_name": "PB-TET-PH-lox66FRT", "sequence-type": "addgene-full", "addgene_id": "139561", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -412793,7 +437821,10 @@ "plasmid_name": "MSCV-opEBNA2-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "220354", - "references": [], + "references": [ + "https://doi.org/10.3389/fimmu.2023.1331730", + "https://www.ncbi.nlm.nih.gov/pubmed/38169736" + ], "kit": null, "att_sites": [ "attB1", @@ -412838,7 +437869,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag6_nostop", "sequence-type": "addgene-full", "addgene_id": "153184", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -412869,7 +437903,10 @@ "plasmid_name": "pTW322", "sequence-type": "addgene-full", "addgene_id": "115953", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "att_sites": [ "attP1", @@ -412905,7 +437942,10 @@ "plasmid_name": "pCAG/ATP11B(E180Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209250", - "references": [], + "references": [ + "https://doi.org/10.1002/1873-3468.13629", + "https://www.ncbi.nlm.nih.gov/pubmed/31571211" + ], "kit": null, "att_sites": [ "attB1", @@ -412950,7 +437990,10 @@ "plasmid_name": "pFunnyfarm", "sequence-type": "depositor-full", "addgene_id": "24755", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2010.05.006", + "https://www.ncbi.nlm.nih.gov/pubmed/20542254" + ], "kit": null, "att_sites": [ "attP1", @@ -412980,7 +438023,9 @@ "plasmid_name": "pMpGWB119", "sequence-type": "depositor-full", "addgene_id": "68573", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -413027,7 +438072,10 @@ "plasmid_name": "pRP(Exp)-CMV> ORF_924bp (Azgp1):dTomato:IRES:Puro", "sequence-type": "addgene-full", "addgene_id": "110831", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.201701465RR", + "https://www.ncbi.nlm.nih.gov/pubmed/29570397" + ], "kit": null, "att_sites": [ "attB1", @@ -413075,7 +438123,10 @@ "plasmid_name": "pKD001 pME minprom_EGFP", "sequence-type": "addgene-full", "addgene_id": "195955", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11561-7", + "https://www.ncbi.nlm.nih.gov/pubmed/31451684" + ], "kit": null, "att_sites": [ "attL1", @@ -413110,7 +438161,10 @@ "plasmid_name": "pYPQ292-D570A", "sequence-type": "addgene-full", "addgene_id": "129679", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -413142,7 +438196,10 @@ "plasmid_name": "MAC_N_GSK3B", "sequence-type": "addgene-full", "addgene_id": "111687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -413188,7 +438245,6 @@ "plasmid_name": "pLENTI_TetOn_Hu_PTTG1(WT)", "sequence-type": "addgene-full", "addgene_id": "136346", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -413247,7 +438303,10 @@ "plasmid_name": "pDL108", "sequence-type": "addgene-full", "addgene_id": "175913", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -413271,7 +438330,10 @@ "plasmid_name": "pCMB-LEr", "sequence-type": "depositor-full", "addgene_id": "61186", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -413317,7 +438379,6 @@ "plasmid_name": "pDONR221-erg", "sequence-type": "addgene-full", "addgene_id": "192728", - "references": [], "kit": null, "file": "data/addgene_plasmids/192728.addgene-full.gb" }, @@ -413326,7 +438387,6 @@ "plasmid_name": "GST-thr-RAF1-RBD", "sequence-type": "addgene-full", "addgene_id": "86033", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -413370,7 +438430,10 @@ "plasmid_name": "pEF5-FRT-V5-DEST-GFP-Kif26b", "sequence-type": "addgene-full", "addgene_id": "102862", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "att_sites": [ "attB1", @@ -413414,7 +438477,10 @@ "plasmid_name": "MAC-CTSS", "sequence-type": "addgene-full", "addgene_id": "172415", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -413470,7 +438536,10 @@ "plasmid_name": "pDONR223_B2M_p.M1V", "sequence-type": "addgene-full", "addgene_id": "81281", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -413502,7 +438571,10 @@ "plasmid_name": "pDONR223_PPP2R1A_p.A541G", "sequence-type": "addgene-full", "addgene_id": "82771", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -413531,7 +438603,10 @@ "plasmid_name": "pDONR223_SYCP1_p.D889N", "sequence-type": "addgene-full", "addgene_id": "81538", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -413563,7 +438638,10 @@ "plasmid_name": "MLKS2delARMec", "sequence-type": "addgene-full", "addgene_id": "130860", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "att_sites": [ "attL1", @@ -413597,7 +438675,6 @@ "plasmid_name": "dCas9 gateway compatible", "sequence-type": "addgene-full", "addgene_id": "128322", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -413653,7 +438730,10 @@ "plasmid_name": "pDON223 Spike H655Y", "sequence-type": "addgene-full", "addgene_id": "180059", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -413682,7 +438762,10 @@ "plasmid_name": "actc1b-mKate2-rab35b", "sequence-type": "addgene-full", "addgene_id": "109628", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -413724,7 +438807,6 @@ "plasmid_name": "6xHis-WT-long-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192091", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -413771,7 +438853,10 @@ "plasmid_name": "pME-TagBFP-NS", "sequence-type": "depositor-full", "addgene_id": "75342", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": null, "att_sites": [ "attL1", @@ -413804,7 +438889,10 @@ "plasmid_name": "MAC_C_VPS35L", "sequence-type": "addgene-full", "addgene_id": "209692", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -413849,7 +438937,9 @@ "plasmid_name": "pMpGWB314", "sequence-type": "depositor-full", "addgene_id": "68642", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -413895,7 +438985,10 @@ "plasmid_name": "pDEST-Spe3-RfA-Venus", "sequence-type": "addgene-full", "addgene_id": "186372", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -413942,7 +439035,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP16", "sequence-type": "addgene-full", "addgene_id": "154414", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -413972,7 +439068,10 @@ "plasmid_name": "pGMCtN-P38-sspBmyc", "sequence-type": "depositor-full", "addgene_id": "27375", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkp015", + "https://www.ncbi.nlm.nih.gov/pubmed/19174563" + ], "kit": null, "att_sites": [ "attB1", @@ -413999,7 +439098,6 @@ "plasmid_name": "R777-E312 Hs.SHC3-nostop", "sequence-type": "depositor-full", "addgene_id": "70596", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -414027,7 +439125,10 @@ "plasmid_name": "pFRT_TO_eGFP_TIA1", "sequence-type": "addgene-full", "addgene_id": "106094", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "att_sites": [ "attB1", @@ -414074,7 +439175,10 @@ "plasmid_name": "pAG425GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14225", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -414137,7 +439241,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_F27A", "sequence-type": "depositor-full", "addgene_id": "65661", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -414182,7 +439289,10 @@ "plasmid_name": "pDONR221-SLC34A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161266", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -414213,7 +439323,10 @@ "plasmid_name": "TFORF3516", "sequence-type": "depositor-full", "addgene_id": "144992", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -414273,7 +439386,6 @@ "plasmid_name": "p667-UBC-TSSK4-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189901", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -414339,7 +439451,10 @@ "plasmid_name": "pDONR223_SPOP_p.W131C", "sequence-type": "addgene-full", "addgene_id": "81643", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -414371,7 +439486,10 @@ "plasmid_name": "p3E-Lact-C2", "sequence-type": "addgene-full", "addgene_id": "109553", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -414402,7 +439520,10 @@ "plasmid_name": "TFORF3001", "sequence-type": "addgene-full", "addgene_id": "144477", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -414462,7 +439583,6 @@ "plasmid_name": "p41Neo MagicFluor", "sequence-type": "depositor-full", "addgene_id": "58564", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -414516,7 +439636,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp16", "sequence-type": "addgene-full", "addgene_id": "168845", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -414545,7 +439668,10 @@ "plasmid_name": "TFORF3347", "sequence-type": "addgene-full", "addgene_id": "144823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -414605,7 +439731,10 @@ "plasmid_name": "pHAGE-EGFR-V843I", "sequence-type": "addgene-full", "addgene_id": "116317", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -414659,7 +439788,10 @@ "plasmid_name": "pDONR221_SLC1A4", "sequence-type": "addgene-full", "addgene_id": "131962", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -414690,7 +439822,10 @@ "plasmid_name": "TFORF3321", "sequence-type": "addgene-full", "addgene_id": "144797", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -414750,7 +439885,10 @@ "plasmid_name": "pEBTetD-SNAP-Centrobin", "sequence-type": "addgene-full", "addgene_id": "136830", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -414794,7 +439932,10 @@ "plasmid_name": "pDONR223 SCAF8_isoD", "sequence-type": "addgene-full", "addgene_id": "122467", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "att_sites": [ "attB1", @@ -414823,7 +439964,6 @@ "plasmid_name": "pSCM167-Venus-VF-hADAM10(aa220-459)", "sequence-type": "addgene-full", "addgene_id": "189555", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -414879,7 +440019,10 @@ "plasmid_name": "pDONR221-SLC26A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161186", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -414910,7 +440053,10 @@ "plasmid_name": "pEBTet-SNAP-Centrin2", "sequence-type": "addgene-full", "addgene_id": "136784", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -414957,7 +440103,10 @@ "plasmid_name": "actc1b-mKate2-CaaX(tH)", "sequence-type": "addgene-full", "addgene_id": "109487", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -414997,7 +440146,10 @@ "plasmid_name": "pMOS009E: Entry vector for: QuasAr2-mOrange2 voltage sensor (plasma membrane)", "sequence-type": "addgene-full", "addgene_id": "163062", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -415030,7 +440182,10 @@ "plasmid_name": "pHAGE-B2M-L13Sfs*31", "sequence-type": "addgene-full", "addgene_id": "116123", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -415085,7 +440240,10 @@ "plasmid_name": "pDONR223_CYP3A5_WT", "sequence-type": "addgene-full", "addgene_id": "81823", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -415117,7 +440275,10 @@ "plasmid_name": "pDONR223_ERO1L_WT", "sequence-type": "addgene-full", "addgene_id": "81797", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -415149,7 +440310,10 @@ "plasmid_name": "pMMK ENTR 1 CMV mAG h-Geminin", "sequence-type": "addgene-full", "addgene_id": "206281", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206281.addgene-full.gb" }, @@ -415158,7 +440322,10 @@ "plasmid_name": "CMYA5T2/pDEST17", "sequence-type": "addgene-full", "addgene_id": "98118", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "att_sites": [ "attB1", @@ -415194,7 +440361,10 @@ "plasmid_name": "pCMV-HA-JMJD2A", "sequence-type": "addgene-full", "addgene_id": "24180", - "references": [], + "references": [ + "https://doi.org/10.1038/nature04837", + "https://www.ncbi.nlm.nih.gov/pubmed/16732293" + ], "kit": null, "att_sites": [ "attB1", @@ -415243,7 +440413,10 @@ "plasmid_name": "pDONR223_MAP2K5_p.P111S", "sequence-type": "addgene-full", "addgene_id": "81477", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -415275,7 +440448,10 @@ "plasmid_name": "pDONR221-SLC15A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161052", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -415306,7 +440482,10 @@ "plasmid_name": "SmoM2 (W535L)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64628", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attB1", @@ -415365,7 +440544,10 @@ "plasmid_name": "actc1b-mKate2-Rab41", "sequence-type": "addgene-full", "addgene_id": "109767", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -415407,7 +440589,10 @@ "plasmid_name": "TFORF3167", "sequence-type": "addgene-full", "addgene_id": "144643", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -415467,7 +440652,10 @@ "plasmid_name": "pHAGE-EGFR-G810S", "sequence-type": "addgene-full", "addgene_id": "116258", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -415521,7 +440709,10 @@ "plasmid_name": "IZ801: pMVP (L3-L2) 6x His epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121761", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -415556,7 +440747,6 @@ "plasmid_name": "R777-E266 Hs.RASSF7-nostop", "sequence-type": "addgene-full", "addgene_id": "70550", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -415584,7 +440774,10 @@ "plasmid_name": "pDONR223_EGFR_p.ELREA_746del", "sequence-type": "addgene-full", "addgene_id": "82911", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -415614,7 +440807,10 @@ "plasmid_name": "pDONR221-SLC9A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161329", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -415646,7 +440842,10 @@ "plasmid_name": "pcDNA6.2EmGFP-cDAXX", "sequence-type": "addgene-full", "addgene_id": "169727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "att_sites": [ "attB1", @@ -415699,7 +440898,10 @@ "plasmid_name": "pcDNA3.1_FLAG-YAP1", "sequence-type": "addgene-full", "addgene_id": "173001", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -415749,7 +440951,10 @@ "plasmid_name": "CLK2", "sequence-type": "addgene-full", "addgene_id": "155459", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -415792,7 +440997,10 @@ "plasmid_name": "pDONR221-MTCH2_STOP", "sequence-type": "addgene-full", "addgene_id": "161120", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161120.addgene-full.gb" }, @@ -415801,7 +441009,10 @@ "plasmid_name": "pDONR223_KEAP1_p.G419W", "sequence-type": "addgene-full", "addgene_id": "81505", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -415833,7 +441044,10 @@ "plasmid_name": "HB501: pMVP (L1-L4) RIP", "sequence-type": "addgene-full", "addgene_id": "121688", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -415864,7 +441078,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_delta169-189", "sequence-type": "addgene-full", "addgene_id": "187136", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -415909,7 +441126,10 @@ "plasmid_name": "TFORF3255", "sequence-type": "addgene-full", "addgene_id": "144731", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -415969,7 +441189,10 @@ "plasmid_name": "actc1b-mKate2-rab25b", "sequence-type": "addgene-full", "addgene_id": "109615", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -416011,7 +441234,10 @@ "plasmid_name": "pDON223 Spike A570D", "sequence-type": "addgene-full", "addgene_id": "180064", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -416040,7 +441266,10 @@ "plasmid_name": "TFORF3409", "sequence-type": "addgene-full", "addgene_id": "144885", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -416100,7 +441329,6 @@ "plasmid_name": "pCW57.1_blasti", "sequence-type": "addgene-full", "addgene_id": "194067", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -416157,7 +441385,10 @@ "plasmid_name": "pLenti4/V5-DEST-AERRIE", "sequence-type": "addgene-full", "addgene_id": "204023", - "references": [], + "references": [ + "https://doi.org/10.3389/fcell.2020.619079", + "https://www.ncbi.nlm.nih.gov/pubmed/33505972" + ], "kit": null, "att_sites": [ "attB1", @@ -416213,7 +441444,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO-miR-30 R4-R3", "sequence-type": "depositor-full", "addgene_id": "62125", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -416249,7 +441483,10 @@ "plasmid_name": "pPB-PGK-destination", "sequence-type": "depositor-full", "addgene_id": "60436", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.08.029", + "https://www.ncbi.nlm.nih.gov/pubmed/25215486" + ], "kit": null, "att_sites": [ "attR1", @@ -416302,7 +441539,10 @@ "plasmid_name": "p21-P369S-MEFV", "sequence-type": "addgene-full", "addgene_id": "134712", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "att_sites": [ "attB1", @@ -416359,7 +441599,10 @@ "plasmid_name": "W118-1_hRSK3(RPS6KA2)", "sequence-type": "addgene-full", "addgene_id": "180384", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "att_sites": [ "attB1", @@ -416421,7 +441664,6 @@ "plasmid_name": "R777-E188 Hs.PPP1CA-nostop", "sequence-type": "depositor-full", "addgene_id": "70472", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -416449,7 +441691,10 @@ "plasmid_name": "pKG-GW1-SRT1", "sequence-type": "addgene-full", "addgene_id": "203171", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "att_sites": [ "attB1", @@ -416479,7 +441724,10 @@ "plasmid_name": "pThy1-Flpbow1", "sequence-type": "depositor-full", "addgene_id": "45180", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2450", + "https://www.ncbi.nlm.nih.gov/pubmed/23817127" + ], "kit": null, "att_sites": [ "attB1", @@ -416513,7 +441761,10 @@ "plasmid_name": "pGWB660-CYCD3;1", "sequence-type": "addgene-full", "addgene_id": "140751", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.16309", + "https://www.ncbi.nlm.nih.gov/pubmed/31679162" + ], "kit": null, "att_sites": [ "attB1", @@ -416556,7 +441807,10 @@ "plasmid_name": "p35SZ.D", "sequence-type": "depositor-full", "addgene_id": "51512", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attB1", @@ -416607,7 +441861,10 @@ "plasmid_name": "ADSL_pLX307", "sequence-type": "addgene-full", "addgene_id": "98311", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -416667,7 +441924,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-4", "sequence-type": "depositor-full", "addgene_id": "46691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -416718,7 +441978,10 @@ "plasmid_name": "pDONR223_RB1_p.Y756C", "sequence-type": "addgene-full", "addgene_id": "82863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -416747,7 +442010,6 @@ "plasmid_name": "pDONR221_CDK2AP1_3UTR", "sequence-type": "depositor-full", "addgene_id": "65862", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -416778,7 +442040,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP9_nostop", "sequence-type": "addgene-full", "addgene_id": "149312", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -416807,7 +442072,10 @@ "plasmid_name": "pAG424GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14415", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -416870,7 +442138,10 @@ "plasmid_name": "pAAV2-SynTetOff-myrGFP", "sequence-type": "addgene-full", "addgene_id": "190233", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190233.addgene-full.gb" }, @@ -416879,7 +442150,10 @@ "plasmid_name": "pDONR221-rap1-K651R", "sequence-type": "addgene-full", "addgene_id": "84528", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.185793.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25800674" + ], "kit": null, "att_sites": [ "attL2" @@ -416906,7 +442180,10 @@ "plasmid_name": "pCZGY2851", "sequence-type": "addgene-full", "addgene_id": "87761", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attB1", @@ -416946,7 +442223,10 @@ "plasmid_name": "beta-catenin (S33Y)-pcw107", "sequence-type": "addgene-full", "addgene_id": "64615", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attB1", @@ -417005,7 +442285,10 @@ "plasmid_name": "LB901: pMVP/PB/Blast-DEST", "sequence-type": "addgene-full", "addgene_id": "121873", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -417047,7 +442330,10 @@ "plasmid_name": "pLentipuro3/TO/V5-GW/EGFP-Firefly Luciferase", "sequence-type": "addgene-full", "addgene_id": "119816", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-018-0112-8", + "https://www.ncbi.nlm.nih.gov/pubmed/30683938" + ], "kit": null, "att_sites": [ "attB1", @@ -417114,7 +442400,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158193", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -417180,7 +442465,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF6_stop", "sequence-type": "addgene-full", "addgene_id": "168563", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -417209,7 +442497,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MTUS1", "sequence-type": "addgene-full", "addgene_id": "192298", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -417238,7 +442529,10 @@ "plasmid_name": "PNRC2", "sequence-type": "addgene-full", "addgene_id": "155830", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -417281,7 +442575,10 @@ "plasmid_name": "pHAGE-EGFR-L62R", "sequence-type": "addgene-full", "addgene_id": "116265", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -417331,7 +442628,10 @@ "plasmid_name": "TFORF3475", "sequence-type": "addgene-full", "addgene_id": "144951", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -417391,7 +442691,10 @@ "plasmid_name": "pENTR-HOXA1", "sequence-type": "addgene-full", "addgene_id": "47054", - "references": [], + "references": [ + "https://doi.org/10.1126/scitranslmed.3002166", + "https://www.ncbi.nlm.nih.gov/pubmed/21653829" + ], "kit": null, "att_sites": [ "attL1", @@ -417421,7 +442724,10 @@ "plasmid_name": "R620-M11-303: CMV51p> SARS-CoV-2 S(1-1213)-2P-T4f-His6", "sequence-type": "addgene-full", "addgene_id": "170195", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -417476,7 +442782,10 @@ "plasmid_name": "pAG416GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14172", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -417488,7 +442797,10 @@ "plasmid_name": "pDONR223_HTR4_p.T105M", "sequence-type": "addgene-full", "addgene_id": "81731", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -417520,7 +442832,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK9_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189873", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -417587,7 +442898,10 @@ "plasmid_name": "pDONR221-SLC30A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161314", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -417618,7 +442932,10 @@ "plasmid_name": "pAM-PAT-ProTTG1 GW", "sequence-type": "depositor-full", "addgene_id": "79753", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.0060141", + "https://www.ncbi.nlm.nih.gov/pubmed/18547143" + ], "kit": null, "att_sites": [ "attR1", @@ -417651,7 +442968,10 @@ "plasmid_name": "p{3P3-mTurquoise::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182180", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -417693,7 +443013,10 @@ "plasmid_name": "pDONR223_NMNAT3_WT", "sequence-type": "addgene-full", "addgene_id": "81885", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -417725,7 +443048,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp9", "sequence-type": "addgene-full", "addgene_id": "168937", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -417754,7 +443080,10 @@ "plasmid_name": "pHAGE-BRAF-M53I", "sequence-type": "addgene-full", "addgene_id": "116185", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -417809,7 +443138,10 @@ "plasmid_name": "TFORF3029", "sequence-type": "addgene-full", "addgene_id": "144505", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -417869,7 +443201,6 @@ "plasmid_name": "pTwist-ENTR-ENST00000663481.1", "sequence-type": "addgene-full", "addgene_id": "192752", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -417899,7 +443230,10 @@ "plasmid_name": "SFRS10", "sequence-type": "addgene-full", "addgene_id": "156007", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -417942,7 +443276,10 @@ "plasmid_name": "pDONR221_SLC49A3", "sequence-type": "depositor-full", "addgene_id": "132168", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -417973,7 +443310,10 @@ "plasmid_name": "pDONR221_SLC25A20", "sequence-type": "addgene-full", "addgene_id": "132027", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -418004,7 +443344,10 @@ "plasmid_name": "pLenti PGK Blast DEST (w524-1)", "sequence-type": "depositor-full", "addgene_id": "19065", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -418066,7 +443409,6 @@ "plasmid_name": "R777-E008 Hs.ALK-nostop", "sequence-type": "depositor-full", "addgene_id": "70292", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -418093,7 +443435,6 @@ "plasmid_name": "R777-E224 Hs.RAPGEF1-nostop", "sequence-type": "depositor-full", "addgene_id": "70508", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -418121,7 +443462,10 @@ "plasmid_name": "pTW081", "sequence-type": "addgene-full", "addgene_id": "115929", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115929.addgene-full.gb" }, @@ -418130,7 +443474,6 @@ "plasmid_name": "pMP71-HLA-B15-His", "sequence-type": "addgene-full", "addgene_id": "104848", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -418167,7 +443510,10 @@ "plasmid_name": "PL-5LTR-RGR(DMD\u200b#\u200b1\u200b)-AmCyan-A", "sequence-type": "addgene-full", "addgene_id": "138482", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-14957-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32170079" + ], "kit": null, "att_sites": [ "attB1", @@ -418215,7 +443561,10 @@ "plasmid_name": "pDONR223_SPATA8_p.P83T", "sequence-type": "addgene-full", "addgene_id": "81260", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -418247,7 +443596,6 @@ "plasmid_name": "IDG_CLCA2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161645", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -418306,7 +443654,10 @@ "plasmid_name": "MAC_C_H31", "sequence-type": "addgene-full", "addgene_id": "111666", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -418351,7 +443702,10 @@ "plasmid_name": "pENTR-ERKKTRClover", "sequence-type": "addgene-full", "addgene_id": "59138", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attL1", @@ -418377,7 +443731,10 @@ "plasmid_name": "pHAGE-ERBB2", "sequence-type": "addgene-full", "addgene_id": "116734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116734.addgene-full.gb" }, @@ -418386,7 +443743,6 @@ "plasmid_name": "pLEX307-TMPRSS2-G418", "sequence-type": "addgene-full", "addgene_id": "158459", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -418446,7 +443802,10 @@ "plasmid_name": "pAC92-pmax-dCas9VP96", "sequence-type": "depositor-full", "addgene_id": "48224", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attB1", @@ -418479,7 +443838,6 @@ "plasmid_name": "pDD346", "sequence-type": "addgene-full", "addgene_id": "133311", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -418511,7 +443869,10 @@ "plasmid_name": "pRATIO2212", "sequence-type": "addgene-full", "addgene_id": "141302", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -418564,7 +443925,10 @@ "plasmid_name": "pHAGE-PIK3CA-H1047R", "sequence-type": "addgene-full", "addgene_id": "116500", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -418613,7 +443977,10 @@ "plasmid_name": "pDONR221_SLC4A3", "sequence-type": "addgene-full", "addgene_id": "132288", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -418644,7 +444011,9 @@ "plasmid_name": "pMpGWB427", "sequence-type": "depositor-full", "addgene_id": "68692", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -418694,7 +444063,10 @@ "plasmid_name": "mpeg:Rab7-stop-polyA; cmlc2:GFP", "sequence-type": "addgene-full", "addgene_id": "213738", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abp8321", + "https://www.ncbi.nlm.nih.gov/pubmed/36044568" + ], "kit": null, "att_sites": [ "attB1", @@ -418740,7 +444112,10 @@ "plasmid_name": "Silene_conica _PheRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202659", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "att_sites": [ "attB1", @@ -418779,7 +444154,10 @@ "plasmid_name": "pGGEV_+1_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49295", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -418791,7 +444169,6 @@ "plasmid_name": "His8:MBP-tev-Phe-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83384", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -418830,7 +444207,6 @@ "plasmid_name": "R777-E262 Hs.RASSF5-nostop", "sequence-type": "depositor-full", "addgene_id": "70546", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -418858,7 +444234,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj10a-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164947", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB1", @@ -418905,7 +444284,10 @@ "plasmid_name": "Flag-HA-USP13", "sequence-type": "addgene-full", "addgene_id": "22568", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -418950,7 +444332,10 @@ "plasmid_name": "pDONR221-SVOP_STOP", "sequence-type": "addgene-full", "addgene_id": "161471", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -418981,7 +444366,9 @@ "plasmid_name": "pDRF\u2019- AmTryoshka1;3-GS", "sequence-type": "addgene-full", "addgene_id": "100967", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "att_sites": [ "attB1", @@ -419025,7 +444412,10 @@ "plasmid_name": "pT2-cryR;tmem88aCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90135", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -419073,7 +444463,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV NS1", "sequence-type": "addgene-full", "addgene_id": "145362", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -419116,7 +444509,10 @@ "plasmid_name": "pAG425GAL-ccdB", "sequence-type": "addgene-full", "addgene_id": "14153", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -419178,7 +444574,10 @@ "plasmid_name": "pDONR223_IRAK4_WT", "sequence-type": "addgene-full", "addgene_id": "82286", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -419207,7 +444606,10 @@ "plasmid_name": "pSGE_768_Nhe2-EcR_dCP", "sequence-type": "depositor-full", "addgene_id": "71223", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -419240,7 +444642,10 @@ "plasmid_name": "C238-E07: attB2r-SV40polyA-attB3", "sequence-type": "addgene-full", "addgene_id": "162917", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -419271,7 +444676,10 @@ "plasmid_name": "piggyBac_rtTA (4th_Gen)_SNCA_IRES_NGN2-2A-PURO_Synapsin-BirA (pEHA1623)", "sequence-type": "addgene-full", "addgene_id": "209085", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/35688132" + ], "kit": null, "att_sites": [ "attB1", @@ -419332,7 +444740,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3B WT", "sequence-type": "addgene-full", "addgene_id": "123092", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -419377,7 +444788,10 @@ "plasmid_name": "pShuttle-PR.CC9", "sequence-type": "addgene-full", "addgene_id": "192932", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "att_sites": [ "attL1", @@ -419422,7 +444836,10 @@ "plasmid_name": "pDONR221_SLC3A2", "sequence-type": "addgene-full", "addgene_id": "132213", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -419453,7 +444870,10 @@ "plasmid_name": "p667-UBC-NRF2-E79Q-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207814", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -419518,7 +444938,10 @@ "plasmid_name": "pWOL-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209365", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -419563,7 +444986,10 @@ "plasmid_name": "pDONR223_TCF4_WT", "sequence-type": "addgene-full", "addgene_id": "82166", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -419592,7 +445018,10 @@ "plasmid_name": "pcDNA4/TO/GFP-TTP", "sequence-type": "addgene-full", "addgene_id": "141190", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.03.006", + "https://www.ncbi.nlm.nih.gov/pubmed/30917308" + ], "kit": null, "file": "data/addgene_plasmids/141190.addgene-full.gb" }, @@ -419601,7 +445030,10 @@ "plasmid_name": "pHAGE-SMO", "sequence-type": "addgene-full", "addgene_id": "116792", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -419655,7 +445087,6 @@ "plasmid_name": "R777-E092 Hs.FLT3-nostop", "sequence-type": "depositor-full", "addgene_id": "70376", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -419683,7 +445114,10 @@ "plasmid_name": "pHAGE-MAP2K5__IQCH", "sequence-type": "addgene-full", "addgene_id": "116826", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -419734,7 +445168,10 @@ "plasmid_name": "R701-X58-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) Q61R", "sequence-type": "addgene-full", "addgene_id": "159566", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -419781,7 +445218,10 @@ "plasmid_name": "pSGE_717_S2-1_CGCG-to-DFD", "sequence-type": "depositor-full", "addgene_id": "71174", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -419814,7 +445254,10 @@ "plasmid_name": "pCR8 PALI1", "sequence-type": "addgene-full", "addgene_id": "114442", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "att_sites": [ "attL1", @@ -419843,7 +445286,10 @@ "plasmid_name": "pENTR L5-QF-L2", "sequence-type": "depositor-full", "addgene_id": "32305", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32305.depositor-full.gb" }, @@ -419852,7 +445298,10 @@ "plasmid_name": "pME GFP-PCNA", "sequence-type": "addgene-full", "addgene_id": "105977", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "att_sites": [ "attL1", @@ -419889,7 +445338,10 @@ "plasmid_name": "pGWB505", "sequence-type": "depositor-full", "addgene_id": "74847", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -419940,7 +445392,10 @@ "plasmid_name": "R713-M52-303: CMV51p> Halotag-NRasHVR", "sequence-type": "addgene-full", "addgene_id": "159686", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "att_sites": [ "attB1", @@ -419998,7 +445453,10 @@ "plasmid_name": "pDONR221-Utp11", "sequence-type": "addgene-full", "addgene_id": "99984", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attL1", @@ -420029,7 +445487,6 @@ "plasmid_name": "pAG416GAL-2x-uA-BWCoV-SW1_3CL", "sequence-type": "addgene-full", "addgene_id": "201936", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -420076,7 +445533,6 @@ "plasmid_name": "pEXP1-DEST-Noa1-HIS", "sequence-type": "addgene-full", "addgene_id": "191972", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -420108,7 +445564,10 @@ "plasmid_name": "pHAGE-PIK3CA-E39K", "sequence-type": "addgene-full", "addgene_id": "116472", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -420162,7 +445621,10 @@ "plasmid_name": "pCAG/ATP10D-HA", "sequence-type": "addgene-full", "addgene_id": "209217", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -420208,7 +445670,6 @@ "plasmid_name": "pREP81xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79019", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -420255,7 +445716,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST CDC42EP1 S192A", "sequence-type": "depositor-full", "addgene_id": "69820", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "att_sites": [ "attB1", @@ -420305,7 +445769,6 @@ "plasmid_name": "pSMPUW_6.11_M3_Ef1a-gateway-HA-SV40", "sequence-type": "addgene-full", "addgene_id": "128447", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -420350,7 +445813,6 @@ "plasmid_name": "pENTR-L4R1-PHtetO2", "sequence-type": "addgene-full", "addgene_id": "139526", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -420389,7 +445851,6 @@ "plasmid_name": "IDG_BEST4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161678", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -420448,7 +445909,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PRPF4B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214463", - "references": [], "kit": null, "file": "data/addgene_plasmids/214463.addgene-full.gb" }, @@ -420457,7 +445917,6 @@ "plasmid_name": "R777-E327 Hs.SPRY1", "sequence-type": "depositor-full", "addgene_id": "70611", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -420485,7 +445944,10 @@ "plasmid_name": "pDONR221_SLC39A3", "sequence-type": "addgene-full", "addgene_id": "132081", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -420516,7 +445978,6 @@ "plasmid_name": "pLEX307-CTSB-blast", "sequence-type": "addgene-full", "addgene_id": "158464", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -420575,7 +446036,10 @@ "plasmid_name": "pHAGE-XPO1-R749Q", "sequence-type": "addgene-full", "addgene_id": "116709", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -420627,7 +446091,6 @@ "plasmid_name": "R777-E054 Hs.EGFR-nostop", "sequence-type": "depositor-full", "addgene_id": "70338", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -420639,7 +446102,10 @@ "plasmid_name": "TFORF3548", "sequence-type": "depositor-full", "addgene_id": "145024", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -420699,7 +446165,10 @@ "plasmid_name": "pDONR223_MAGEC2_p.E269K", "sequence-type": "addgene-full", "addgene_id": "81389", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -420731,7 +446200,10 @@ "plasmid_name": "MAC_N_KLF12", "sequence-type": "addgene-full", "addgene_id": "167767", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -420776,7 +446248,10 @@ "plasmid_name": "pDest_U6_A2_CG2_T1_gRNA", "sequence-type": "addgene-full", "addgene_id": "199387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "att_sites": [ "attR3", @@ -420820,7 +446295,10 @@ "plasmid_name": "pAG414GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14311", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -420882,7 +446360,10 @@ "plasmid_name": "pDONR221_SLC44A5", "sequence-type": "addgene-full", "addgene_id": "132155", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -420913,7 +446394,10 @@ "plasmid_name": "pDONR_221_middle-entry_NanoLuc", "sequence-type": "addgene-full", "addgene_id": "128673", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11259-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31366908" + ], "kit": null, "att_sites": [ "attL1", @@ -420945,7 +446429,6 @@ "plasmid_name": "EEF1A2 - E122K in pENTR", "sequence-type": "addgene-full", "addgene_id": "216587", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -420974,7 +446457,10 @@ "plasmid_name": "pGWB415", "sequence-type": "depositor-full", "addgene_id": "74809", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74809.depositor-full.gb" }, @@ -420983,7 +446469,10 @@ "plasmid_name": "pCM1.127", "sequence-type": "depositor-full", "addgene_id": "21384", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL4", @@ -421014,7 +446503,10 @@ "plasmid_name": "VanGlow-GL-DSCP", "sequence-type": "depositor-full", "addgene_id": "83338", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.01.014", + "https://www.ncbi.nlm.nih.gov/pubmed/28245922" + ], "kit": null, "att_sites": [ "attR1", @@ -421047,7 +446539,10 @@ "plasmid_name": "pLenti-PGK-flag-RAP1B-V12-neo", "sequence-type": "addgene-full", "addgene_id": "156175", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -421109,7 +446604,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0527-luc2", "sequence-type": "addgene-full", "addgene_id": "214657", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214657.addgene-full.gb" }, @@ -421118,7 +446616,10 @@ "plasmid_name": "pDONR223_PAK1_WT", "sequence-type": "addgene-full", "addgene_id": "82220", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -421148,7 +446649,10 @@ "plasmid_name": "pLX307 DEDD", "sequence-type": "addgene-full", "addgene_id": "117744", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -421208,7 +446712,10 @@ "plasmid_name": "pENTR223-BFRF0.5", "sequence-type": "addgene-full", "addgene_id": "195772", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -421237,7 +446744,10 @@ "plasmid_name": "pQCXIB CMV/TO DEST (w320-1)", "sequence-type": "depositor-full", "addgene_id": "17400", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -421284,7 +446794,10 @@ "plasmid_name": "pDONR221-ZNF883", "sequence-type": "depositor-full", "addgene_id": "101608", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -421315,7 +446828,10 @@ "plasmid_name": "Flag-HA-OTUD6B", "sequence-type": "addgene-full", "addgene_id": "22555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -421360,7 +446876,10 @@ "plasmid_name": "pME-mCherry-PA-Rac1", "sequence-type": "addgene-full", "addgene_id": "169042", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2020.05.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32516597" + ], "kit": null, "att_sites": [ "attL1", @@ -421394,7 +446913,10 @@ "plasmid_name": "pKH159_FLAG-APEX2-YIPF4 WT", "sequence-type": "addgene-full", "addgene_id": "214978", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "att_sites": [ "attB1", @@ -421445,7 +446967,10 @@ "plasmid_name": "pENTR-L3-Cas9n-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141044", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -421477,7 +447002,10 @@ "plasmid_name": "pHAGE-PTPN11-Q79R", "sequence-type": "addgene-full", "addgene_id": "116646", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -421531,7 +447059,6 @@ "plasmid_name": "pFRT-TODestFLAGHA_HuB", "sequence-type": "depositor-full", "addgene_id": "65755", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -421576,7 +447103,10 @@ "plasmid_name": "pLV-PLXNB2-mRBD", "sequence-type": "addgene-full", "addgene_id": "86240", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "att_sites": [ "attB1", @@ -421636,7 +447166,10 @@ "plasmid_name": "pLCS105", "sequence-type": "addgene-full", "addgene_id": "209358", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -421677,7 +447210,10 @@ "plasmid_name": "pDEST-EGFP-TARG1", "sequence-type": "addgene-full", "addgene_id": "172586", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attB1", @@ -421719,7 +447255,10 @@ "plasmid_name": "pDONR223_BTC_p.P70S", "sequence-type": "addgene-full", "addgene_id": "81312", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -421751,7 +447290,10 @@ "plasmid_name": "pDest-659 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161883", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -421815,7 +447357,10 @@ "plasmid_name": "W279A-short-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "195409", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "att_sites": [ "attB1", @@ -421865,7 +447410,9 @@ "plasmid_name": "acta2_GFP_pA_pDestTolpA2", "sequence-type": "depositor-full", "addgene_id": "78684", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24594685" + ], "kit": null, "att_sites": [ "attB1", @@ -421905,7 +447452,10 @@ "plasmid_name": "pPB-DEST-R5R4-pPuroTK", "sequence-type": "addgene-full", "addgene_id": "141060", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR4", @@ -421956,7 +447506,10 @@ "plasmid_name": "pDONR223-MAP3K11", "sequence-type": "addgene-full", "addgene_id": "23473", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -421988,7 +447541,10 @@ "plasmid_name": "bArr1-V5", "sequence-type": "addgene-full", "addgene_id": "201492", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2023.105107", + "https://www.ncbi.nlm.nih.gov/pubmed/37517699" + ], "kit": null, "att_sites": [ "attB1", @@ -422048,7 +447604,6 @@ "plasmid_name": "R777-E230 Hs.RASA2-nostop", "sequence-type": "depositor-full", "addgene_id": "70514", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -422077,7 +447632,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-EEF2K_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170592", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -422143,7 +447697,10 @@ "plasmid_name": "Moe-pDONR221", "sequence-type": "addgene-full", "addgene_id": "124239", - "references": [], + "references": [ + "https://doi.org/10.1002/cbin.10607", + "https://www.ncbi.nlm.nih.gov/pubmed/27006187" + ], "kit": null, "att_sites": [ "attL1", @@ -422174,7 +447731,10 @@ "plasmid_name": "pGWT35S-OEP7-mCherry", "sequence-type": "addgene-full", "addgene_id": "182587", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "att_sites": [ "attB1", @@ -422219,7 +447779,10 @@ "plasmid_name": "pDONR223_OR2T33_p.W147C", "sequence-type": "addgene-full", "addgene_id": "81336", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -422251,7 +447814,10 @@ "plasmid_name": "pDONR223-ADRBK2", "sequence-type": "addgene-full", "addgene_id": "23793", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -422283,7 +447849,10 @@ "plasmid_name": "pHAGE-PIK3CG-R544*", "sequence-type": "addgene-full", "addgene_id": "116582", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -422338,7 +447907,10 @@ "plasmid_name": "pDONR223-SGK", "sequence-type": "addgene-full", "addgene_id": "23708", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -422370,7 +447942,10 @@ "plasmid_name": "pHAGE-PIK3CA-P104L", "sequence-type": "addgene-full", "addgene_id": "116519", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -422424,7 +447999,10 @@ "plasmid_name": "pDONR221-NIPAL3", "sequence-type": "addgene-full", "addgene_id": "132291", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -422455,7 +448033,10 @@ "plasmid_name": "pCFJ1410 - [1-2] ENTR - Fluor - mCherry(PATCs, NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159859", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -422487,7 +448068,10 @@ "plasmid_name": "MIS18A_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176996", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -422543,7 +448127,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP13", "sequence-type": "addgene-full", "addgene_id": "169386", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -422586,7 +448169,10 @@ "plasmid_name": "pDONR223_ATF2_WT", "sequence-type": "addgene-full", "addgene_id": "82204", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -422615,7 +448201,10 @@ "plasmid_name": "p2R3a-3xVenusYFP-OcsT", "sequence-type": "depositor-full", "addgene_id": "71271", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL3", @@ -422652,7 +448241,10 @@ "plasmid_name": "pENTR1A hu_ncOGT WT", "sequence-type": "addgene-full", "addgene_id": "154281", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "att_sites": [ "attL1", @@ -422676,7 +448268,10 @@ "plasmid_name": "pENTR1A no ccDB (w48-1)", "sequence-type": "addgene-full", "addgene_id": "17398", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -422700,7 +448295,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(L301R/V303R/V306R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128657", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -422750,7 +448348,10 @@ "plasmid_name": "pDONR221_SLC6A12", "sequence-type": "addgene-full", "addgene_id": "132171", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -422781,7 +448382,10 @@ "plasmid_name": "pGEMHE-mScarlet-hCenpC", "sequence-type": "addgene-full", "addgene_id": "171490", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2021.04.013", + "https://www.ncbi.nlm.nih.gov/pubmed/33964210" + ], "kit": null, "file": "data/addgene_plasmids/171490.addgene-full.gb" }, @@ -422790,7 +448394,9 @@ "plasmid_name": "pDEST mfap4:icre-p2a-tomato", "sequence-type": "addgene-full", "addgene_id": "135217", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "att_sites": [ "attB1", @@ -422833,7 +448439,10 @@ "plasmid_name": "MSCV-N E4orf1", "sequence-type": "addgene-full", "addgene_id": "38063", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "att_sites": [ "attB1", @@ -422878,7 +448487,10 @@ "plasmid_name": "pDONR223_RHOA_p.S85F", "sequence-type": "addgene-full", "addgene_id": "81279", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -422890,7 +448502,10 @@ "plasmid_name": "pCIpA102-G-HLA-A2_GFP", "sequence-type": "addgene-full", "addgene_id": "85162", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201343671", + "https://www.ncbi.nlm.nih.gov/pubmed/24293164" + ], "kit": null, "att_sites": [ "attB1", @@ -422931,7 +448546,10 @@ "plasmid_name": "pJW4.15", "sequence-type": "depositor-full", "addgene_id": "62870", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -422975,7 +448593,10 @@ "plasmid_name": "pWZL Neo Myr Flag GRK5", "sequence-type": "addgene-full", "addgene_id": "20495", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -423016,7 +448637,10 @@ "plasmid_name": "pMx/ATP10B-HA", "sequence-type": "addgene-full", "addgene_id": "209233", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209233.addgene-full.gb" }, @@ -423025,7 +448649,6 @@ "plasmid_name": "pSMPUW_8.3_M4_CAMKIIA-gateway-V5-SV40-Zeo", "sequence-type": "addgene-full", "addgene_id": "128463", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -423070,7 +448693,6 @@ "plasmid_name": "pDONR221-APN", "sequence-type": "addgene-full", "addgene_id": "158440", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -423099,7 +448721,10 @@ "plasmid_name": "pCellFree_G09", "sequence-type": "depositor-full", "addgene_id": "67143", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "att_sites": [ "attR1" @@ -423138,7 +448763,10 @@ "plasmid_name": "THOC6", "sequence-type": "addgene-full", "addgene_id": "156085", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -423182,7 +448810,10 @@ "plasmid_name": "pQCXIN- myc ULK1 K46I", "sequence-type": "addgene-full", "addgene_id": "27627", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1196371", + "https://www.ncbi.nlm.nih.gov/pubmed/21205641" + ], "kit": null, "att_sites": [ "attB1", @@ -423226,7 +448857,10 @@ "plasmid_name": "pGWT35S-KOC169-MXMT", "sequence-type": "addgene-full", "addgene_id": "182728", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "att_sites": [ "attB1", @@ -423268,7 +448902,10 @@ "plasmid_name": "pYPQ292-E848A", "sequence-type": "addgene-full", "addgene_id": "129681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -423300,7 +448937,10 @@ "plasmid_name": "R989-X10-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) G12V", "sequence-type": "addgene-full", "addgene_id": "159542", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -423346,7 +448986,10 @@ "plasmid_name": "EGFP-Mm_MyoGEF(WT)", "sequence-type": "addgene-full", "addgene_id": "136325", - "references": [], + "references": [ + "https://doi.org/10.1038/nm.4364", + "https://www.ncbi.nlm.nih.gov/pubmed/28692064" + ], "kit": null, "att_sites": [ "attB1", @@ -423399,7 +449042,10 @@ "plasmid_name": "pCPP3373", "sequence-type": "addgene-full", "addgene_id": "128718", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -423430,7 +449076,10 @@ "plasmid_name": "2HA-pDEST-N", "sequence-type": "addgene-full", "addgene_id": "118373", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attR1", @@ -423478,7 +449127,10 @@ "plasmid_name": "pHAGE-VLDLR", "sequence-type": "addgene-full", "addgene_id": "116802", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -423532,7 +449184,10 @@ "plasmid_name": "pDONR221 NLRP1 delta787-843", "sequence-type": "addgene-full", "addgene_id": "166821", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -423565,7 +449220,10 @@ "plasmid_name": "pHAGE-PIK3CA-C378Y", "sequence-type": "addgene-full", "addgene_id": "116456", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -423619,7 +449277,10 @@ "plasmid_name": "pDONR221 Nsa2", "sequence-type": "depositor-full", "addgene_id": "63768", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -423650,7 +449311,10 @@ "plasmid_name": "HS-H2B-RFP", "sequence-type": "addgene-full", "addgene_id": "105953", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25600237" + ], "kit": null, "att_sites": [ "attB1", @@ -423700,7 +449364,10 @@ "plasmid_name": "pH7m34GW-35S:SNACS", "sequence-type": "addgene-full", "addgene_id": "203576", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.56351", + "https://www.ncbi.nlm.nih.gov/pubmed/32463362" + ], "kit": null, "att_sites": [ "attB1", @@ -423748,7 +449415,10 @@ "plasmid_name": "pAG424GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14343", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -423811,7 +449481,10 @@ "plasmid_name": "pPB-cT3G-cERP2-TSC22D3", "sequence-type": "addgene-full", "addgene_id": "192916", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -423857,7 +449530,6 @@ "plasmid_name": "pCM3.17", "sequence-type": "depositor-full", "addgene_id": "19607", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -423880,7 +449552,10 @@ "plasmid_name": "pMXs-Six1", "sequence-type": "addgene-full", "addgene_id": "158532", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.55249", + "https://www.ncbi.nlm.nih.gov/pubmed/32602462" + ], "kit": null, "att_sites": [ "attB1", @@ -423911,7 +449586,10 @@ "plasmid_name": "pDL12", "sequence-type": "addgene-full", "addgene_id": "175899", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -423942,7 +449620,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS4A", "sequence-type": "addgene-full", "addgene_id": "145346", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -423985,7 +449666,10 @@ "plasmid_name": "C417-E02: attB4-polyhedrinp>His6-MBP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162933", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -424023,7 +449707,10 @@ "plasmid_name": "pHAGE-N'-FLAG-HA-NAP1S318A", "sequence-type": "addgene-full", "addgene_id": "195410", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.202303082", + "https://www.ncbi.nlm.nih.gov/pubmed/38059900" + ], "kit": null, "file": "data/addgene_plasmids/195410.addgene-full.gb" }, @@ -424032,7 +449719,10 @@ "plasmid_name": "pDONR223_MAP2K4_WT", "sequence-type": "addgene-full", "addgene_id": "82142", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -424062,7 +449752,10 @@ "plasmid_name": "MAC_N_IRF9", "sequence-type": "addgene-full", "addgene_id": "187738", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -424108,7 +449801,10 @@ "plasmid_name": "pDONR 223 VPS4B", "sequence-type": "addgene-full", "addgene_id": "169320", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.108493", + "https://www.ncbi.nlm.nih.gov/pubmed/33326793" + ], "kit": null, "att_sites": [ "attL1", @@ -424138,7 +449834,10 @@ "plasmid_name": "pDONR221_SLC41A1", "sequence-type": "addgene-full", "addgene_id": "132237", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -424169,7 +449868,10 @@ "plasmid_name": "pJRA108", "sequence-type": "addgene-full", "addgene_id": "209341", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -424211,7 +449913,10 @@ "plasmid_name": "pSGE_539_2xUAS_dCP", "sequence-type": "depositor-full", "addgene_id": "71168", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -424246,7 +449951,10 @@ "plasmid_name": "pENTR-TARDBP-W385G", "sequence-type": "addgene-full", "addgene_id": "141326", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "att_sites": [ "attL1", @@ -424277,7 +449985,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.E110K", "sequence-type": "addgene-full", "addgene_id": "81390", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -424309,7 +450020,10 @@ "plasmid_name": "pCFJ2210 - [1-2] ENTR - Fluor - mMaple3(1 intron, syntrons(3), no_start, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159864", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -424340,7 +450054,10 @@ "plasmid_name": "pDONR221-SLC45A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161455", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -424371,7 +450088,10 @@ "plasmid_name": "pDONR221-Ctdnep1_Cter", "sequence-type": "addgene-full", "addgene_id": "196522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attL1", @@ -424395,7 +450115,10 @@ "plasmid_name": "p5Enrp1bE1", "sequence-type": "addgene-full", "addgene_id": "90111", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -424426,7 +450149,10 @@ "plasmid_name": "pDONR223_TRAF2_WT", "sequence-type": "addgene-full", "addgene_id": "82239", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -424455,7 +450181,10 @@ "plasmid_name": "pcDNA3.1 myc-NL-GW", "sequence-type": "addgene-full", "addgene_id": "113446", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "att_sites": [ "attR1", @@ -424511,7 +450240,6 @@ "plasmid_name": "pcDNA-SUN1 mScarlet", "sequence-type": "addgene-full", "addgene_id": "187677", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -424565,7 +450293,10 @@ "plasmid_name": "pINDUCER-21-LCOR-P2A-HOXA9-T2A-HOXA5-IMPROVED", "sequence-type": "addgene-full", "addgene_id": "154088", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "att_sites": [ "attB1", @@ -424624,7 +450355,10 @@ "plasmid_name": "PB-TA-ERP2-hcGAS(R255A)", "sequence-type": "addgene-full", "addgene_id": "208397", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06889-6", + "https://www.ncbi.nlm.nih.gov/pubmed/38200309" + ], "kit": null, "att_sites": [ "attB1", @@ -424679,7 +450413,10 @@ "plasmid_name": "tetO-SMAD6", "sequence-type": "addgene-full", "addgene_id": "170700", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -424741,7 +450478,10 @@ "plasmid_name": "pFRT_TO_FlagHA_USP10", "sequence-type": "addgene-full", "addgene_id": "127102", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.12.024", + "https://www.ncbi.nlm.nih.gov/pubmed/31981475" + ], "kit": null, "att_sites": [ "attB1", @@ -424786,7 +450526,6 @@ "plasmid_name": "IDG_GRID1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161661", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -424846,7 +450585,10 @@ "plasmid_name": "pGWB421", "sequence-type": "depositor-full", "addgene_id": "74815", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -424896,7 +450638,10 @@ "plasmid_name": "pCDNA5_miniTurbo-C12orf49", "sequence-type": "addgene-full", "addgene_id": "155111", - "references": [], + "references": [ + "https://doi.org/10.1038/s42255-020-0211-z", + "https://www.ncbi.nlm.nih.gov/pubmed/32694731" + ], "kit": null, "att_sites": [ "attB1", @@ -424940,7 +450685,10 @@ "plasmid_name": "MSCV-N EBNA3A", "sequence-type": "addgene-full", "addgene_id": "37956", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "file": "data/addgene_plasmids/37956.addgene-full.gb" }, @@ -424949,7 +450697,10 @@ "plasmid_name": "pDN0520 (pDEST, TRP1)", "sequence-type": "addgene-full", "addgene_id": "210481", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "att_sites": [ "attR1", @@ -425001,7 +450752,10 @@ "plasmid_name": "pDONR223-KSR2", "sequence-type": "addgene-full", "addgene_id": "23501", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -425033,7 +450787,10 @@ "plasmid_name": "pSGE_886_Nhe2_EcR-to-ato_RB", "sequence-type": "addgene-full", "addgene_id": "71181", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -425066,7 +450823,6 @@ "plasmid_name": "R777-E040 Hs.DUSP4-nostop", "sequence-type": "depositor-full", "addgene_id": "70324", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -425094,7 +450850,10 @@ "plasmid_name": "pDONR221_SLC35E1", "sequence-type": "addgene-full", "addgene_id": "132098", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -425125,7 +450884,10 @@ "plasmid_name": "pHAGE-AKT1", "sequence-type": "addgene-full", "addgene_id": "116710", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -425180,7 +450942,10 @@ "plasmid_name": "pLX307 P2A GFP Luciferase", "sequence-type": "addgene-full", "addgene_id": "193674", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -425247,7 +451012,10 @@ "plasmid_name": "pYPQ293 (BhCas12b_v4)", "sequence-type": "addgene-full", "addgene_id": "136383", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -425279,7 +451047,10 @@ "plasmid_name": "pQCXP CMV/TO DEST (w360-1)", "sequence-type": "depositor-full", "addgene_id": "17386", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -425327,7 +451098,10 @@ "plasmid_name": "EGFP-Mm_Plk5(D168A)", "sequence-type": "addgene-full", "addgene_id": "136318", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.00607-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21245385" + ], "kit": null, "att_sites": [ "attB1", @@ -425380,7 +451154,6 @@ "plasmid_name": "R777-E359 Hs.YAP1", "sequence-type": "depositor-full", "addgene_id": "70643", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -425408,7 +451181,6 @@ "plasmid_name": "dVGlut-Gal80", "sequence-type": "depositor-full", "addgene_id": "52555", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -425442,7 +451214,10 @@ "plasmid_name": "pDONR221_SLC25A18", "sequence-type": "addgene-full", "addgene_id": "132003", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -425473,7 +451248,9 @@ "plasmid_name": "pMpGWB206", "sequence-type": "depositor-full", "addgene_id": "68597", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -425524,7 +451301,10 @@ "plasmid_name": "pENTR221-NR1H3", "sequence-type": "addgene-full", "addgene_id": "79514", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -425555,7 +451335,10 @@ "plasmid_name": "pcDNA4/TO/GFP-GIGYF2", "sequence-type": "addgene-full", "addgene_id": "141189", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.03.006", + "https://www.ncbi.nlm.nih.gov/pubmed/30917308" + ], "kit": null, "att_sites": [ "attB1", @@ -425607,7 +451390,10 @@ "plasmid_name": "pCPP5107", "sequence-type": "addgene-full", "addgene_id": "128725", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -425638,7 +451424,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP16", "sequence-type": "addgene-full", "addgene_id": "141269", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -425667,7 +451456,10 @@ "plasmid_name": "pDONR223_ARAF_WT", "sequence-type": "addgene-full", "addgene_id": "82096", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -425699,7 +451491,10 @@ "plasmid_name": "pENTR-SLC66A5_STOP", "sequence-type": "addgene-full", "addgene_id": "221422", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -425729,7 +451524,10 @@ "plasmid_name": "LA102: pMVP (L3-L2) P2A-eYFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121778", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -425768,7 +451566,10 @@ "plasmid_name": "pDONR 221-XERICO (NON-STOP)", "sequence-type": "addgene-full", "addgene_id": "118684", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attL1", @@ -425799,7 +451600,10 @@ "plasmid_name": "pAG414GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14239", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -425858,7 +451662,10 @@ "plasmid_name": "TFORF3499", "sequence-type": "addgene-full", "addgene_id": "144975", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -425918,7 +451725,9 @@ "plasmid_name": "pDONR221-MAGI2(v1)", "sequence-type": "addgene-full", "addgene_id": "166182", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -425949,7 +451758,10 @@ "plasmid_name": "pHAGE-EGFR-E709G", "sequence-type": "addgene-full", "addgene_id": "116241", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -426003,7 +451815,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp4", "sequence-type": "addgene-full", "addgene_id": "168913", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -426033,7 +451848,10 @@ "plasmid_name": "TFORF3045", "sequence-type": "addgene-full", "addgene_id": "144521", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -426093,7 +451911,10 @@ "plasmid_name": "CCNL1", "sequence-type": "addgene-full", "addgene_id": "155440", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -426137,7 +451958,10 @@ "plasmid_name": "pTF101.1gw3", "sequence-type": "addgene-full", "addgene_id": "172181", - "references": [], + "references": [ + "https://doi.org/10.1007/s00299-005-0048-7", + "https://www.ncbi.nlm.nih.gov/pubmed/16249869" + ], "kit": null, "att_sites": [ "attR3", @@ -426179,7 +452003,10 @@ "plasmid_name": "pDONR223_BRAF_p.G466E", "sequence-type": "addgene-full", "addgene_id": "81715", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -426191,7 +452018,10 @@ "plasmid_name": "pMLS253", "sequence-type": "addgene-full", "addgene_id": "114271", - "references": [], + "references": [ + "https://doi.org/10.17912/DDVH-BG64", + "https://www.ncbi.nlm.nih.gov/pubmed/32550388" + ], "kit": null, "att_sites": [ "attL1", @@ -426224,7 +452054,10 @@ "plasmid_name": "pENTR D-TOPO-C3_5", "sequence-type": "depositor-full", "addgene_id": "60254", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -426255,7 +452088,10 @@ "plasmid_name": "pHMattR3-attR4-GFP", "sequence-type": "addgene-full", "addgene_id": "196247", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-023-04451-8", + "https://www.ncbi.nlm.nih.gov/pubmed/36646768" + ], "kit": null, "att_sites": [ "attR3", @@ -426292,7 +452128,6 @@ "plasmid_name": "R777-E348 Hs.TIAM1-nostop", "sequence-type": "addgene-full", "addgene_id": "70632", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -426320,7 +452155,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway mmu SE-Irf2bpl K", "sequence-type": "addgene-full", "addgene_id": "89380", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -426375,7 +452213,10 @@ "plasmid_name": "LOC5570884 Cardioacceleratory peptide receptor", "sequence-type": "addgene-full", "addgene_id": "115373", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115373.addgene-full.gb" }, @@ -426384,7 +452225,10 @@ "plasmid_name": "pEX-CMV-SP-YFP-STM1(24-685) EF hand 3 mut (A79K, N80D, D82G)", "sequence-type": "depositor-full", "addgene_id": "18865", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "att_sites": [ "attB1", @@ -426427,7 +452271,10 @@ "plasmid_name": "pDestattB_ubi:EGFP (pCM272)", "sequence-type": "depositor-full", "addgene_id": "68339", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.23989", + "https://www.ncbi.nlm.nih.gov/pubmed/23723152" + ], "kit": null, "att_sites": [ "attB1", @@ -426475,7 +452322,10 @@ "plasmid_name": "JL104: pMVP/Neo-DEST", "sequence-type": "addgene-full", "addgene_id": "121857", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -426520,7 +452370,10 @@ "plasmid_name": "pDONR223_RAB31_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82993", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -426549,7 +452402,10 @@ "plasmid_name": "pMLS538", "sequence-type": "addgene-full", "addgene_id": "188881", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "att_sites": [ "attL1", @@ -426581,7 +452437,10 @@ "plasmid_name": "MAC-BSG", "sequence-type": "addgene-full", "addgene_id": "158383", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -426626,7 +452485,9 @@ "plasmid_name": "pMpGWB219", "sequence-type": "depositor-full", "addgene_id": "68610", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -426673,7 +452534,10 @@ "plasmid_name": "GPR35_pLX307", "sequence-type": "addgene-full", "addgene_id": "98335", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -426732,7 +452596,10 @@ "plasmid_name": "pMuLE ENTR CMV R4-R3", "sequence-type": "depositor-full", "addgene_id": "62093", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -426765,7 +452632,10 @@ "plasmid_name": "pAG303GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14277", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -426824,7 +452694,10 @@ "plasmid_name": "pCZGY2849", "sequence-type": "depositor-full", "addgene_id": "74112", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "att_sites": [ "attL1", @@ -426853,7 +452726,10 @@ "plasmid_name": "pDONR223_RB1_p.E398L", "sequence-type": "addgene-full", "addgene_id": "82847", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -426882,7 +452758,9 @@ "plasmid_name": "pGem-sHyper:sAPX", "sequence-type": "addgene-full", "addgene_id": "84738", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "att_sites": [ "attB1", @@ -426926,7 +452804,10 @@ "plasmid_name": "pSlick-Neo-KANK1", "sequence-type": "addgene-full", "addgene_id": "121983", - "references": [], + "references": [ + "https://doi.org/10.1038/srep46392", + "https://www.ncbi.nlm.nih.gov/pubmed/28436992" + ], "kit": null, "att_sites": [ "attB1", @@ -426993,7 +452874,10 @@ "plasmid_name": "p3E-SV40-puromycin", "sequence-type": "addgene-full", "addgene_id": "138358", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attL3", @@ -427029,7 +452913,10 @@ "plasmid_name": "pEBTet-SNAP-Centrobin", "sequence-type": "addgene-full", "addgene_id": "136829", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -427076,7 +452963,10 @@ "plasmid_name": "actc1b-mKate2-rab38a", "sequence-type": "addgene-full", "addgene_id": "109631", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -427118,7 +453008,10 @@ "plasmid_name": "TFORF3239", "sequence-type": "addgene-full", "addgene_id": "144715", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -427178,7 +453071,10 @@ "plasmid_name": "pDONR221-SLC25A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161104", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -427210,7 +453106,10 @@ "plasmid_name": "pDONR223_DOK1_p.P419S", "sequence-type": "addgene-full", "addgene_id": "82768", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -427239,7 +453138,10 @@ "plasmid_name": "pDONR223_LNX1_p.V564I", "sequence-type": "addgene-full", "addgene_id": "81521", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -427271,7 +453173,10 @@ "plasmid_name": "pLV[Exp]-EF1A>Tet3G:IRES:Neo", "sequence-type": "addgene-full", "addgene_id": "198756", - "references": [], + "references": [ + "https://doi.org/10.1038/s41380-021-01117-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33972691" + ], "kit": null, "att_sites": [ "attB1", @@ -427337,7 +453242,9 @@ "plasmid_name": "pME-Lifeact-EGFP-3xHA (JDW 1322)", "sequence-type": "addgene-full", "addgene_id": "224494", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -427375,7 +453282,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF7b", "sequence-type": "depositor-full", "addgene_id": "168883", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -427404,7 +453314,6 @@ "plasmid_name": "pAM-35s-CBL4-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102396", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -427437,7 +453346,10 @@ "plasmid_name": "V5-WT-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192088", - "references": [], + "references": [ + "https://doi.org/10.2337/db16-1023", + "https://www.ncbi.nlm.nih.gov/pubmed/28607106" + ], "kit": null, "att_sites": [ "attB1", @@ -427488,7 +453400,10 @@ "plasmid_name": "pT-Rex Dest30 dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134736", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "att_sites": [ "attB1", @@ -427535,7 +453450,10 @@ "plasmid_name": "pDest-1.7kbfabp6-eGFP-pA-CrymCherry", "sequence-type": "addgene-full", "addgene_id": "159088", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abg1371", + "https://www.ncbi.nlm.nih.gov/pubmed/34301599" + ], "kit": null, "att_sites": [ "attB1", @@ -427582,7 +453500,10 @@ "plasmid_name": "JH204: pMVP (R4-R3) human PDX1 open", "sequence-type": "addgene-full", "addgene_id": "121745", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -427613,7 +453534,10 @@ "plasmid_name": "pDONR223_CCL2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82935", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -427642,7 +453566,10 @@ "plasmid_name": "pMuLE ENTR U6 n.s shRNA L5-L2", "sequence-type": "depositor-full", "addgene_id": "62139", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -427676,7 +453603,10 @@ "plasmid_name": "TFORF3472", "sequence-type": "addgene-full", "addgene_id": "144948", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -427736,7 +453666,10 @@ "plasmid_name": "pCBLgRNA", "sequence-type": "addgene-full", "addgene_id": "199726", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad231", + "https://www.ncbi.nlm.nih.gov/pubmed/37070560" + ], "kit": null, "att_sites": [ "attL2", @@ -427764,7 +453697,10 @@ "plasmid_name": "A1-LCD-8F+4Y", "sequence-type": "addgene-full", "addgene_id": "178662", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -427799,7 +453735,10 @@ "plasmid_name": "pDONR223_U2AF1_WT", "sequence-type": "addgene-full", "addgene_id": "81807", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -427831,7 +453770,10 @@ "plasmid_name": "pJF1106", "sequence-type": "depositor-full", "addgene_id": "8836", - "references": [], + "references": [ + "https://doi.org/10.1016/S0014-5793%2803%2900070-X", + "https://www.ncbi.nlm.nih.gov/pubmed/12606030" + ], "kit": null, "att_sites": [ "attR1", @@ -427872,7 +453814,10 @@ "plasmid_name": "pMOS028: Mitycam calcium sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163046", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -427937,7 +453882,10 @@ "plasmid_name": "TFORF3111", "sequence-type": "addgene-full", "addgene_id": "144587", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -427997,7 +453945,10 @@ "plasmid_name": "pAAV_GW_Dest", "sequence-type": "addgene-full", "addgene_id": "86955", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1918241117", + "https://www.ncbi.nlm.nih.gov/pubmed/32300008" + ], "kit": null, "att_sites": [ "attR1" @@ -428039,7 +453990,6 @@ "plasmid_name": "pLenti UBC LC3Flux (HaloTag7-mGFP-LC3-STOP)", "sequence-type": "addgene-full", "addgene_id": "215014", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -428105,7 +454055,10 @@ "plasmid_name": "pHAGE-ALK-C990R", "sequence-type": "addgene-full", "addgene_id": "116107", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -428155,7 +454108,10 @@ "plasmid_name": "pDONR221-FOXE1", "sequence-type": "depositor-full", "addgene_id": "101439", - 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"references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -428385,7 +454353,10 @@ "plasmid_name": "pDONR223_AKT1_p.V201I", "sequence-type": "addgene-full", "addgene_id": "81453", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -428418,7 +454389,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1", "sequence-type": "addgene-full", "addgene_id": "221484", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -428478,7 +454452,9 @@ "plasmid_name": "nTALE+CD_for TUB_8N_1397NC", "sequence-type": "addgene-full", "addgene_id": "193383", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "att_sites": [ "attB1", @@ -428525,7 +454501,10 @@ "plasmid_name": "pDONR221-SLC15A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161076", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -428556,7 +454535,10 @@ "plasmid_name": "TFORF2977", "sequence-type": "addgene-full", "addgene_id": "144453", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -428616,7 +454598,10 @@ "plasmid_name": "p3E-RhoAa", "sequence-type": "addgene-full", "addgene_id": "109577", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -428647,7 +454632,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp12", "sequence-type": "addgene-full", "addgene_id": "168861", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -428676,7 +454664,6 @@ "plasmid_name": "R777-E136 Hs.MRAS-nostop", "sequence-type": "depositor-full", "addgene_id": "70420", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -428704,7 +454691,10 @@ "plasmid_name": "pAG425GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14393", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -428767,7 +454757,10 @@ "plasmid_name": "5'-BirA-FLAG Sap30bp-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212092", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -428808,7 +454801,10 @@ "plasmid_name": "pDONR SMARCB1 var 2", "sequence-type": "addgene-full", "addgene_id": "111181", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.44161", + "https://www.ncbi.nlm.nih.gov/pubmed/30860482" + ], "kit": null, "att_sites": [ "attL1", @@ -428837,7 +454833,10 @@ "plasmid_name": "pCWXPG-UBI-Ngn3PDX1MafA", "sequence-type": "addgene-full", "addgene_id": "114303", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "att_sites": [ "attB1", @@ -428897,7 +454896,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12C", "sequence-type": "addgene-full", "addgene_id": "81667", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -428930,7 +454932,6 @@ "plasmid_name": "pEF 3-GUS-2", "sequence-type": "depositor-full", "addgene_id": "20104", - "references": [], "kit": null, "att_sites": [ "attL2", @@ -428962,7 +454963,10 @@ "plasmid_name": "pDONR223_ERBB2IP_p.E463K", "sequence-type": "addgene-full", "addgene_id": "81587", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -428995,7 +454999,10 @@ "plasmid_name": "pGAN201", "sequence-type": "addgene-full", "addgene_id": "129204", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/29056345" + ], "kit": null, "att_sites": [ "attB1", @@ -429042,7 +455049,10 @@ "plasmid_name": "p5E-161K enhancer", "sequence-type": "addgene-full", "addgene_id": "138365", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attL4", @@ -429073,7 +455083,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep76", "sequence-type": "addgene-full", "addgene_id": "136814", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -429118,7 +455131,10 @@ "plasmid_name": "pHvL1P4GA", "sequence-type": "addgene-full", "addgene_id": "112028", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-8944-7_14", + "https://www.ncbi.nlm.nih.gov/pubmed/30460568" + ], "kit": null, "att_sites": [ "attB2" @@ -429149,7 +455165,10 @@ "plasmid_name": "pAG415GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14409", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -429211,7 +455230,10 @@ "plasmid_name": "MiniCoopR U6:gRNA cdkn2a, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118842", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -429255,7 +455277,10 @@ "plasmid_name": "pHAGE-ERBB2-G776V", "sequence-type": "addgene-full", "addgene_id": "116333", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -429305,7 +455330,10 @@ "plasmid_name": "pcDNA3.2/2K-NS4B", "sequence-type": "addgene-full", "addgene_id": "120827", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -429355,7 +455383,10 @@ "plasmid_name": "p3E-rab36", "sequence-type": "addgene-full", "addgene_id": "109697", - 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"references": [], + "references": [ + "https://doi.org/10.7554/eLife.82094", + "https://www.ncbi.nlm.nih.gov/pubmed/36398880" + ], "kit": null, "att_sites": [ "attB1", @@ -429543,7 +455582,10 @@ "plasmid_name": "TFORF3252", "sequence-type": "addgene-full", "addgene_id": "144728", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -429603,7 +455645,10 @@ "plasmid_name": "IG603: pMVP (L1-L4) TRE promoter", "sequence-type": "addgene-full", "addgene_id": "121691", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -429637,7 +455682,10 @@ "plasmid_name": "pDONR223_ZNF597_p.L283V", "sequence-type": "addgene-full", "addgene_id": "82755", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -429666,7 +455714,10 @@ "plasmid_name": "pDONR221-SLC17A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161139", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -429697,7 +455748,10 @@ "plasmid_name": "MLKP1del4ec", "sequence-type": "addgene-full", "addgene_id": "130844", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attL1", @@ -429731,7 +455785,10 @@ "plasmid_name": "pKG-GW1-hCIT K42E", "sequence-type": "addgene-full", "addgene_id": "203168", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "att_sites": [ "attB1", @@ -429761,7 +455818,10 @@ "plasmid_name": "pRosa26-DEST", "sequence-type": "addgene-full", "addgene_id": "21189", - "references": [], + "references": [ + "https://doi.org/10.1186/1755-8417-1-3", + "https://www.ncbi.nlm.nih.gov/pubmed/19014667" + ], "kit": null, "att_sites": [ "attR1", @@ -429819,7 +455879,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND", "sequence-type": "addgene-full", "addgene_id": "169963", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -429850,7 +455913,10 @@ "plasmid_name": "pSLIK TT 3xFLAG ID2 neo", "sequence-type": "addgene-full", "addgene_id": "98393", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "att_sites": [ "attB1", @@ -429918,7 +455984,10 @@ "plasmid_name": "pAB-HDAC5(mut-H-Y)", "sequence-type": "addgene-full", "addgene_id": "114398", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "att_sites": [ "attB1", @@ -429965,7 +456034,10 @@ "plasmid_name": "pENT-L1-Kozak-GAP43-ECFP-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186356", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186356.addgene-full.gb" }, @@ -429974,7 +456046,10 @@ "plasmid_name": "pHAGE-WNK1__PRMT8", "sequence-type": "addgene-full", "addgene_id": "116845", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -430025,7 +456100,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16 E7 Mutant 1", "sequence-type": "addgene-full", "addgene_id": "191545", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "att_sites": [ "attB1", @@ -430071,7 +456149,10 @@ "plasmid_name": "pDESTsmg", "sequence-type": "addgene-full", "addgene_id": "18878", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2007.08.015", + "https://www.ncbi.nlm.nih.gov/pubmed/17949993" + ], "kit": null, "att_sites": [ "attR1", @@ -430103,7 +456184,10 @@ "plasmid_name": "pDONR221_SLC2A11", "sequence-type": "addgene-full", "addgene_id": "132079", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -430134,7 +456218,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab27A", "sequence-type": "addgene-full", "addgene_id": "166432", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -430178,7 +456261,10 @@ "plasmid_name": "pDEST-CMV GFP-GABARAPL1 G116A", "sequence-type": "addgene-full", "addgene_id": "123118", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -430231,7 +456317,10 @@ "plasmid_name": "pDONR207-Citrine-NLS", "sequence-type": "depositor-full", "addgene_id": "44586", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "att_sites": [ "attL1", @@ -430260,7 +456349,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term LMNA", "sequence-type": "addgene-full", "addgene_id": "187576", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -430303,7 +456395,10 @@ "plasmid_name": "pINDUCER20-Flag-NLS-hSPDEF delta3", "sequence-type": "addgene-full", "addgene_id": "100876", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2017.03.048", + "https://www.ncbi.nlm.nih.gov/pubmed/28390865" + ], "kit": null, "att_sites": [ "attB1", @@ -430357,7 +456452,10 @@ "plasmid_name": "pLenti-PGK-KRAS4B(G12V)", "sequence-type": "addgene-full", "addgene_id": "35633", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2011.12.033", + "https://www.ncbi.nlm.nih.gov/pubmed/22341439" + ], "kit": null, "att_sites": [ "attB1", @@ -430417,7 +456515,10 @@ "plasmid_name": "pLenti-Zyxin-D (aa160-340)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187696", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "att_sites": [ "attB1", @@ -430480,7 +456581,6 @@ "plasmid_name": "IDG_KCNA7_OE_1", "sequence-type": "addgene-full", "addgene_id": "161680", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -430539,7 +456639,10 @@ "plasmid_name": "mTALEAD 16S rRNA-2", "sequence-type": "addgene-full", "addgene_id": "210834", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "att_sites": [ "attB1", @@ -430578,7 +456681,10 @@ "plasmid_name": "pHAGE-IDH1-R132L", "sequence-type": "addgene-full", "addgene_id": "116411", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -430633,7 +456739,10 @@ "plasmid_name": "MSCV Puro SCRIB WT", "sequence-type": "addgene-full", "addgene_id": "88886", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3413", + "https://www.ncbi.nlm.nih.gov/pubmed/27694890" + ], "kit": null, "att_sites": [ "attB1", @@ -430676,7 +456785,10 @@ "plasmid_name": "pDONR221-SLC24A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161144", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -430708,7 +456820,10 @@ "plasmid_name": "pDONR221-MAGT1", "sequence-type": "addgene-full", "addgene_id": "132302", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -430739,7 +456854,6 @@ "plasmid_name": "pENTR-Cre", "sequence-type": "addgene-full", "addgene_id": "139545", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -430771,7 +456885,10 @@ "plasmid_name": "pGWB701NL3F10H", "sequence-type": "addgene-full", "addgene_id": "141288", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0454-4", + "https://www.ncbi.nlm.nih.gov/pubmed/31316580" + ], "kit": null, "att_sites": [ "attR1", @@ -430818,7 +456935,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S32-KD", "sequence-type": "addgene-full", "addgene_id": "140311", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -430870,7 +456990,9 @@ "plasmid_name": "pMpGWB310", "sequence-type": "depositor-full", "addgene_id": "68638", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -430917,7 +457039,10 @@ "plasmid_name": "pDONR223_KEAP1_WT", "sequence-type": "addgene-full", "addgene_id": "82077", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL2" @@ -430944,7 +457069,10 @@ "plasmid_name": "Puro-iNotch1IC", "sequence-type": "depositor-full", "addgene_id": "75338", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2016.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/27133796" + ], "kit": null, "att_sites": [ "attB1", @@ -430996,7 +457124,6 @@ "plasmid_name": "p667-UBC-TLK2-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135250", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -431062,7 +457189,10 @@ "plasmid_name": "PB-Neo-TetO-Cdk12_Untagged", "sequence-type": "addgene-full", "addgene_id": "127178", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0758-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30487607" + ], "kit": null, "att_sites": [ "attB1", @@ -431119,7 +457249,10 @@ "plasmid_name": "612 p3E-2A-mCherryCAAXpA", "sequence-type": "addgene-full", "addgene_id": "195971", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL3", @@ -431157,7 +457290,6 @@ "plasmid_name": "pAG426-GAL-ATXN1-Q85", "sequence-type": "addgene-full", "addgene_id": "181712", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -431212,7 +457344,10 @@ "plasmid_name": "pMuLE_ENTR_CBF-GLuc_L3-L2", "sequence-type": "addgene-full", "addgene_id": "113868", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "att_sites": [ "attL2", @@ -431247,7 +457382,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS-Ala148,Ala271", "sequence-type": "addgene-full", "addgene_id": "158633", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attL1", @@ -431276,7 +457414,6 @@ "plasmid_name": "PTPN11 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216604", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -431305,7 +457442,6 @@ "plasmid_name": "p42Neo 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58550", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -431363,7 +457499,10 @@ "plasmid_name": "pDONR221_SLC30A8", "sequence-type": "addgene-full", "addgene_id": "132136", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132136.addgene-full.gb" }, @@ -431372,7 +457511,10 @@ "plasmid_name": "pKH161_FLAG-APEX2-YIPF3 WT", "sequence-type": "addgene-full", "addgene_id": "214980", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "att_sites": [ "attB1", @@ -431423,7 +457565,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-mir-230", "sequence-type": "depositor-full", "addgene_id": "46741", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -431464,7 +457609,10 @@ "plasmid_name": "pENTR5'-attP (pCM254)", "sequence-type": "depositor-full", "addgene_id": "68311", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.23989", + "https://www.ncbi.nlm.nih.gov/pubmed/23723152" + ], "kit": null, "file": "data/addgene_plasmids/68311.depositor-full.gb" }, @@ -431473,7 +457621,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0427-luc2", "sequence-type": "addgene-full", "addgene_id": "214634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -431517,7 +457668,10 @@ "plasmid_name": "pDONR223_BCL10_WT", "sequence-type": "addgene-full", "addgene_id": "82243", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -431546,7 +457700,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L5L2", "sequence-type": "depositor-full", "addgene_id": "113738", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -431580,7 +457737,10 @@ "plasmid_name": "pAG306GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14211", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -431592,7 +457752,10 @@ "plasmid_name": "C513-E07: attB5r--attB1r", "sequence-type": "addgene-full", "addgene_id": "162949", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -431623,7 +457786,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-GFP", "sequence-type": "addgene-full", "addgene_id": "175757", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -431678,7 +457844,10 @@ "plasmid_name": "pDONR223-NEK5", "sequence-type": "addgene-full", "addgene_id": "23434", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -431710,7 +457879,10 @@ "plasmid_name": "pHAGE-PTEN-L247Sfs*6", "sequence-type": "addgene-full", "addgene_id": "116625", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -431764,7 +457936,6 @@ "plasmid_name": "pEF 1-PLE-4", "sequence-type": "depositor-full", "addgene_id": "20086", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -431795,7 +457966,10 @@ "plasmid_name": "pUC-DEST-hPROX1-tdTomato-PuroTK", "sequence-type": "addgene-full", "addgene_id": "141027", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attB1", @@ -431845,7 +458019,9 @@ "plasmid_name": "pMpGWB411", "sequence-type": "depositor-full", "addgene_id": "68676", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -431895,7 +458071,10 @@ "plasmid_name": "pDONR223-RPS6KA1", "sequence-type": "addgene-full", "addgene_id": "23860", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -431926,7 +458105,10 @@ "plasmid_name": "pENTR-R4R3-2xmEGFP-N", "sequence-type": "addgene-full", "addgene_id": "113747", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -431961,7 +458143,9 @@ "plasmid_name": "pDONR201-JIP60ml", "sequence-type": "addgene-full", "addgene_id": "104959", - "references": [], + "references": [ + "https://doi.org/10.6084/m9.figshare.5625607" + ], "kit": null, "att_sites": [ "attL1", @@ -431984,7 +458168,10 @@ "plasmid_name": "pDONR223_FBXO16_p.T50K", "sequence-type": "addgene-full", "addgene_id": "81371", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -432016,7 +458203,10 @@ "plasmid_name": "MAC_N_SOX5", "sequence-type": "addgene-full", "addgene_id": "187742", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -432061,7 +458251,10 @@ "plasmid_name": "pDONR223_JUN_WT", "sequence-type": "addgene-full", "addgene_id": "82138", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -432091,7 +458284,10 @@ "plasmid_name": "pCFJ2366 - intron GG3 - 250bp no PATC", "sequence-type": "addgene-full", "addgene_id": "159885", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -432122,7 +458318,10 @@ "plasmid_name": "pDONR221_SLC26A5", "sequence-type": "addgene-full", "addgene_id": "132044", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -432153,7 +458352,6 @@ "plasmid_name": "pDONR221-nrip1a", "sequence-type": "addgene-full", "addgene_id": "192731", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -432184,7 +458382,10 @@ "plasmid_name": "pENTR.hU6hH1", "sequence-type": "depositor-full", "addgene_id": "32686", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "att_sites": [ "attL1", @@ -432215,7 +458416,10 @@ "plasmid_name": "pAG415GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14146", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -432274,7 +458478,10 @@ "plasmid_name": "pCM3.29", "sequence-type": "depositor-full", "addgene_id": "19402", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -432297,7 +458504,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-KIAA1967", "sequence-type": "addgene-full", "addgene_id": "38082", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -432343,7 +458553,10 @@ "plasmid_name": "pENTR hH1-TERRA", "sequence-type": "depositor-full", "addgene_id": "111381", - "references": [], + "references": [ + "https://doi.org/10.3390/genes7080046", + "https://www.ncbi.nlm.nih.gov/pubmed/27537914" + ], "kit": null, "att_sites": [ "attL1", @@ -432376,7 +458589,10 @@ "plasmid_name": "pRU325", "sequence-type": "addgene-full", "addgene_id": "167676", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attL1", @@ -432412,7 +458628,10 @@ "plasmid_name": "pDONR223_REG1B_p.C64W", "sequence-type": "addgene-full", "addgene_id": "81298", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -432444,7 +458663,10 @@ "plasmid_name": "pCM5.31", "sequence-type": "depositor-full", "addgene_id": "19398", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -432475,7 +458697,10 @@ "plasmid_name": "pCAG/ATP11A(E186Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209249", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -432520,7 +458745,10 @@ "plasmid_name": "pCFJ1415", "sequence-type": "depositor-full", "addgene_id": "84828", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.072", + "https://www.ncbi.nlm.nih.gov/pubmed/27374334" + ], "kit": null, "att_sites": [ "attB1", @@ -432555,7 +458783,10 @@ "plasmid_name": "pDONR223-FLT1", "sequence-type": "addgene-full", "addgene_id": "23912", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -432587,7 +458818,6 @@ "plasmid_name": "IDG_HTR3D_OE_1", "sequence-type": "addgene-full", "addgene_id": "161626", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -432647,7 +458877,6 @@ "plasmid_name": "R777-E124 Hs.MAP2K2-nostop", "sequence-type": "depositor-full", "addgene_id": "70408", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -432675,7 +458904,9 @@ "plasmid_name": "pFLIP35", "sequence-type": "depositor-full", "addgene_id": "65502", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65502.depositor-full.gb" }, @@ -432684,7 +458915,6 @@ "plasmid_name": "R777-E108 Hs.INSRR-nostop", "sequence-type": "depositor-full", "addgene_id": "70392", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -432713,7 +458943,10 @@ "plasmid_name": "pHAGE-MAP2K1", "sequence-type": "addgene-full", "addgene_id": "116757", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -432767,7 +459000,10 @@ "plasmid_name": "pExp_TRE:TAL21", "sequence-type": "depositor-full", "addgene_id": "51795", - "references": [], + "references": [ + "https://doi.org/10.1021/sb500263b", + "https://www.ncbi.nlm.nih.gov/pubmed/25369267" + ], "kit": null, "att_sites": [ "attB1", @@ -432815,7 +459051,10 @@ "plasmid_name": "tetO-IRX5", "sequence-type": "addgene-full", "addgene_id": "170693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -432877,7 +459116,10 @@ "plasmid_name": "pSEM236 - pEXP[Pmlc-2 | histamine | rpl-3 UTR]", "sequence-type": "addgene-full", "addgene_id": "159797", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000349", + "https://www.ncbi.nlm.nih.gov/pubmed/33437931" + ], "kit": null, "att_sites": [ "attB1", @@ -432910,7 +459152,10 @@ "plasmid_name": "pYPQ140", "sequence-type": "addgene-full", "addgene_id": "99895", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2017.11.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29197638" + ], "kit": null, "att_sites": [ "attL2", @@ -432938,7 +459183,10 @@ "plasmid_name": "pHAGE-PIK3CD-A835T", "sequence-type": "addgene-full", "addgene_id": "116563", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -432992,7 +459240,10 @@ "plasmid_name": "pDONR223_LAGE3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83007", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -433021,7 +459272,10 @@ "plasmid_name": "pYPQ141D-peg", "sequence-type": "addgene-full", "addgene_id": "141081", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2020.03.010", + "https://www.ncbi.nlm.nih.gov/pubmed/32222487" + ], "kit": null, "att_sites": [ "attL2", @@ -433052,7 +459306,10 @@ "plasmid_name": "pYPQ165", "sequence-type": "addgene-full", "addgene_id": "109327", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12982", + "https://www.ncbi.nlm.nih.gov/pubmed/29972722" + ], "kit": null, "att_sites": [ "attL1", @@ -433086,7 +459343,10 @@ "plasmid_name": "p35S::AtSOBIR1-YFPn", "sequence-type": "addgene-full", "addgene_id": "86165", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "att_sites": [ "attB1", @@ -433120,7 +459380,10 @@ "plasmid_name": "pT2-cryR;yrkCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90156", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -433168,7 +459431,10 @@ "plasmid_name": "pDONR221-SLC9A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161412", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -433199,7 +459465,10 @@ "plasmid_name": "C453-E09: attB4-Grp78p>-attB5", "sequence-type": "addgene-full", "addgene_id": "162974", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -433226,7 +459495,10 @@ "plasmid_name": "pUAS-Myc-BirA-G3-ER", "sequence-type": "addgene-full", "addgene_id": "173815", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22599-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33888706" + ], "kit": null, "att_sites": [ "attB1", @@ -433278,7 +459550,10 @@ "plasmid_name": "pENTR223-BMRF2", "sequence-type": "addgene-full", "addgene_id": "195803", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -433307,7 +459582,6 @@ "plasmid_name": "pcDNA3.1-ccdB-Nanoluc", "sequence-type": "addgene-full", "addgene_id": "87067", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -433361,8 +459635,8 @@ "sequence-type": "addgene-full", "addgene_id": "22590", "references": [ - "https://doi.org/10.1016/j.celrep.2016.09.079", - "https://www.ncbi.nlm.nih.gov/pubmed/27760321" + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" ], "kit": null, "att_sites": [ @@ -433409,7 +459683,10 @@ "plasmid_name": "pHAGE-PTEN-C136R", "sequence-type": "addgene-full", "addgene_id": "116618", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -433459,7 +459736,10 @@ "plasmid_name": "pMuLE ENTR U6 L1-R5", "sequence-type": "depositor-full", "addgene_id": "62111", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -433493,7 +459773,10 @@ "plasmid_name": "pDONR221_SLC43A2", "sequence-type": "addgene-full", "addgene_id": "132190", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -433524,7 +459807,6 @@ "plasmid_name": "R777-E162 Hs.PEBP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70446", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -433552,7 +459834,10 @@ "plasmid_name": "pLX302", "sequence-type": "addgene-full", "addgene_id": "25896", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "att_sites": [ "attR1", @@ -433618,7 +459903,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) IGF1R", "sequence-type": "addgene-full", "addgene_id": "107499", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB1", @@ -433680,7 +459968,10 @@ "plasmid_name": "pDONR221-LETM2", "sequence-type": "addgene-full", "addgene_id": "132270", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -433711,7 +460002,6 @@ "plasmid_name": "EBP50-pDONR221", "sequence-type": "addgene-full", "addgene_id": "124243", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -433742,7 +460032,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK32A_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170608", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -433808,7 +460097,10 @@ "plasmid_name": "pCR8/GW/TOPO-ETV1", "sequence-type": "addgene-full", "addgene_id": "98623", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -433837,7 +460129,10 @@ "plasmid_name": "pDONR223_CTCF_p.R377H", "sequence-type": "addgene-full", "addgene_id": "81566", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -433869,7 +460164,10 @@ "plasmid_name": "pclbw-opa1(isoform 7DeltaS1)-myc", "sequence-type": "addgene-full", "addgene_id": "62846", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/24703695" + ], "kit": null, "att_sites": [ "attB1", @@ -433908,7 +460206,10 @@ "plasmid_name": "pDONR221-SLC22A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161143", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -433939,7 +460240,10 @@ "plasmid_name": "pDONR-IAA5_no stop", "sequence-type": "depositor-full", "addgene_id": "83868", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -433970,7 +460274,10 @@ "plasmid_name": "R619-M64-303: CMV51p> SARS-CoV-2 S(1-1208)-2P-T4f-3C-His8-Strep2x2 D614G", "sequence-type": "addgene-full", "addgene_id": "166011", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -434026,7 +460333,10 @@ "plasmid_name": "TFORF3276", "sequence-type": "addgene-full", "addgene_id": "144752", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -434086,7 +460396,10 @@ "plasmid_name": "p3E-rab1bb", "sequence-type": "addgene-full", "addgene_id": "109676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -434117,7 +460430,10 @@ "plasmid_name": "actc1b-mKate2-rab11ba", "sequence-type": "addgene-full", "addgene_id": "109596", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -434159,7 +460475,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-Membrane", "sequence-type": "addgene-full", "addgene_id": "168880", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -434188,7 +460507,10 @@ "plasmid_name": "pDONR221-Bms1", "sequence-type": "addgene-full", "addgene_id": "100001", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attL1", @@ -434219,7 +460541,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp2", "sequence-type": "depositor-full", "addgene_id": "168835", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -434248,7 +460573,10 @@ "plasmid_name": "5'-3xFLAG Sap30bp+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212073", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -434288,7 +460616,10 @@ "plasmid_name": "pDONR223_IDH1_p.R132H", "sequence-type": "addgene-full", "addgene_id": "81686", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -434320,7 +460651,10 @@ "plasmid_name": "pDONR221-SLC36A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161238", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -434351,7 +460685,6 @@ "plasmid_name": "R777-E288 Hs.ROS1-nostop", "sequence-type": "depositor-full", "addgene_id": "70572", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -434379,7 +460712,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM", "sequence-type": "addgene-full", "addgene_id": "169982", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attB1", @@ -434431,7 +460767,10 @@ "plasmid_name": "TFORF2953", "sequence-type": "addgene-full", "addgene_id": "144429", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -434491,7 +460830,6 @@ "plasmid_name": "pCENTR_DMC1p_amiRNA", "sequence-type": "addgene-full", "addgene_id": "225985", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -434526,7 +460864,10 @@ "plasmid_name": "pHAGE-ERBB2-S310F", "sequence-type": "addgene-full", "addgene_id": "116349", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116349.addgene-full.gb" }, @@ -434535,7 +460876,6 @@ "plasmid_name": "pENTRY4_ Rac4", "sequence-type": "addgene-full", "addgene_id": "126896", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -434570,7 +460910,10 @@ "plasmid_name": "pDONR223_KRAS_p.G13V", "sequence-type": "addgene-full", "addgene_id": "82800", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -434600,7 +460943,10 @@ "plasmid_name": "pattB-RfB2", "sequence-type": "depositor-full", "addgene_id": "62296", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.115.016808", + "https://www.ncbi.nlm.nih.gov/pubmed/25869647" + ], "kit": null, "att_sites": [ "attR1", @@ -434643,7 +460989,10 @@ "plasmid_name": "pLX304-PCDH7-c", "sequence-type": "addgene-full", "addgene_id": "108540", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-1267-T", + "https://www.ncbi.nlm.nih.gov/pubmed/27821484" + ], "kit": null, "att_sites": [ "attB1", @@ -434702,7 +461051,10 @@ "plasmid_name": "p{3P3-dsRed::KD,attB}", "sequence-type": "addgene-full", "addgene_id": "182178", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -434744,7 +461096,10 @@ "plasmid_name": "A1-LCD-20G+20S", "sequence-type": "addgene-full", "addgene_id": "178683", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -434779,7 +461134,9 @@ "plasmid_name": "pPB-cT3G-cERP2-MSX1", "sequence-type": "addgene-full", "addgene_id": "222557", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -434825,7 +461182,10 @@ "plasmid_name": "pDONR223_JMJD5_p.A230T", "sequence-type": "addgene-full", "addgene_id": "81429", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -434857,7 +461217,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_S", "sequence-type": "addgene-full", "addgene_id": "169402", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -434900,7 +461259,10 @@ "plasmid_name": "KO502: pMVP (L3-L2) HA tag + pA; RIP::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121810", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -434935,7 +461297,6 @@ "plasmid_name": "pAd/CMV/DAX1-IRES-nEGFP", "sequence-type": "addgene-full", "addgene_id": "29752", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -434979,7 +461340,10 @@ "plasmid_name": "tetO-ASCL1-LMX1b-NURR1-PuroR", "sequence-type": "addgene-full", "addgene_id": "182298", - "references": [], + "references": [ + "https://doi.org/10.1038/s41380-021-01273-0", + "https://www.ncbi.nlm.nih.gov/pubmed/34493831" + ], "kit": null, "att_sites": [ "attB1" @@ -435044,7 +461408,10 @@ "plasmid_name": "TFORF3456", "sequence-type": "addgene-full", "addgene_id": "144932", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -435104,7 +461471,10 @@ "plasmid_name": "PRPF8", "sequence-type": "addgene-full", "addgene_id": "155853", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -435147,7 +461517,10 @@ "plasmid_name": "pHAGE-BRAF-V600K", "sequence-type": "addgene-full", "addgene_id": "116206", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -435203,7 +461576,10 @@ "plasmid_name": "pDONR221_SLC12A7", "sequence-type": "addgene-full", "addgene_id": "131873", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -435234,7 +461610,10 @@ "plasmid_name": "TFORF3210", "sequence-type": "addgene-full", "addgene_id": "144686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -435294,7 +461673,10 @@ "plasmid_name": "pLX302_CdTag-HA_EmptyVector", "sequence-type": "addgene-full", "addgene_id": "221465", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attR1", @@ -435361,7 +461743,10 @@ "plasmid_name": "pJOG562", "sequence-type": "depositor-full", "addgene_id": "105340", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -435402,7 +461787,10 @@ "plasmid_name": "pDONR221-SLC10A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161097", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -435433,7 +461821,9 @@ "plasmid_name": "pME TAEL2.0-5xC120-minpro (JDW 1109)", "sequence-type": "addgene-full", "addgene_id": "224507", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -435469,7 +461859,10 @@ "plasmid_name": "pDONR221-SLC9A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161377", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -435500,7 +461893,10 @@ "plasmid_name": "TFORF3090", "sequence-type": "addgene-full", "addgene_id": "144566", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144566.addgene-full.gb" }, @@ -435509,7 +461905,10 @@ "plasmid_name": "pDONR221-SLC46A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161369", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -435540,7 +461939,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp5", "sequence-type": "addgene-full", "addgene_id": "168954", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168954.addgene-full.gb" }, @@ -435549,7 +461951,10 @@ "plasmid_name": "pT3-EF1a-NICD1", "sequence-type": "addgene-full", "addgene_id": "46047", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI63212", + "https://www.ncbi.nlm.nih.gov/pubmed/22797301" + ], "kit": null, "file": "data/addgene_plasmids/46047.addgene-full.gb" }, @@ -435558,7 +461963,10 @@ "plasmid_name": "pEN_TT BirA*-3xFLAG-CSE1L", "sequence-type": "addgene-full", "addgene_id": "192312", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -435588,7 +461996,10 @@ "plasmid_name": "pENTR-ZmIAA10", "sequence-type": "addgene-full", "addgene_id": "188434", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -435619,7 +462030,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP11", "sequence-type": "addgene-full", "addgene_id": "158362", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -435664,7 +462078,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-128-1", "sequence-type": "depositor-full", "addgene_id": "46675", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -435714,7 +462131,6 @@ "plasmid_name": "pFRT-TODestGFP_HuB", "sequence-type": "depositor-full", "addgene_id": "65761", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -435761,7 +462177,10 @@ "plasmid_name": "pDONR221-OSF-TRIM5-21R", "sequence-type": "depositor-full", "addgene_id": "79063", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.16269", + "https://www.ncbi.nlm.nih.gov/pubmed/27253068" + ], "kit": null, "att_sites": [ "attL1", @@ -435796,7 +462215,10 @@ "plasmid_name": "pDONR221-SLC25A21_STOP", "sequence-type": "addgene-full", "addgene_id": "161205", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -435827,7 +462249,9 @@ "plasmid_name": "p5E-TetO8x-CMVmin (JDW 1087)", "sequence-type": "addgene-full", "addgene_id": "224475", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -435860,7 +462284,6 @@ "plasmid_name": "R777-E212 Hs.RAC3-nostop", "sequence-type": "depositor-full", "addgene_id": "70496", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -435888,7 +462311,10 @@ "plasmid_name": "pAG303GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14325", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -435947,7 +462373,10 @@ "plasmid_name": "actc1b-mKate2-Rac1-DN", "sequence-type": "addgene-full", "addgene_id": "109530", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -435989,7 +462418,10 @@ "plasmid_name": "TFORF2938", "sequence-type": "addgene-full", "addgene_id": "144414", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -436049,7 +462481,10 @@ "plasmid_name": "pDONR221_SLC1A2", "sequence-type": "addgene-full", "addgene_id": "131901", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -436080,7 +462515,10 @@ "plasmid_name": "pHAGE-ESR1-Y537S", "sequence-type": "addgene-full", "addgene_id": "116374", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -436132,7 +462570,10 @@ "plasmid_name": "TFORF3364", "sequence-type": "addgene-full", "addgene_id": "144840", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -436192,7 +462633,10 @@ "plasmid_name": "pDONR223_DCAF8_p.R559P", "sequence-type": "addgene-full", "addgene_id": "82789", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -436221,7 +462665,10 @@ "plasmid_name": "TFORF3534", "sequence-type": "depositor-full", "addgene_id": "145010", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -436281,7 +462728,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep290", "sequence-type": "addgene-full", "addgene_id": "136853", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -436326,7 +462776,6 @@ "plasmid_name": "LEMD3_BirA_Cterm", "sequence-type": "addgene-full", "addgene_id": "221517", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -436371,7 +462820,10 @@ "plasmid_name": "pHAGE-BRAF-E586K", "sequence-type": "addgene-full", "addgene_id": "116140", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -436426,7 +462878,6 @@ "plasmid_name": "pCWXPGR-pTF-Epo", "sequence-type": "addgene-full", "addgene_id": "114290", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -436486,7 +462937,10 @@ "plasmid_name": "pDONR221-kcnk10a", "sequence-type": "addgene-full", "addgene_id": "208993", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -436517,7 +462971,10 @@ "plasmid_name": "pYPQ284 (Mb2Cas12a)", "sequence-type": "addgene-full", "addgene_id": "138116", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -436549,7 +463006,10 @@ "plasmid_name": "pDONR223_ACVR2A_WT", "sequence-type": "addgene-full", "addgene_id": "81840", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -436581,7 +463041,6 @@ "plasmid_name": "R777-E341 Hs.TBK1", "sequence-type": "depositor-full", "addgene_id": "70625", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -436609,7 +463068,10 @@ "plasmid_name": "pJA304", "sequence-type": "depositor-full", "addgene_id": "28091", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "att_sites": [ "attL3", @@ -436641,7 +463103,10 @@ "plasmid_name": "pAG416GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14196", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -436702,7 +463167,10 @@ "plasmid_name": "pENTR223-BPLF1_501-1500", "sequence-type": "addgene-full", "addgene_id": "198583", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -436731,7 +463199,10 @@ "plasmid_name": "pDONR221-SLC6A14_STOP", "sequence-type": "addgene-full", "addgene_id": "161031", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -436762,7 +463233,10 @@ "plasmid_name": "IR904: pMVP (L3-L2) pA; CMV::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121799", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -436803,7 +463277,10 @@ "plasmid_name": "pDONR223_CNBD1_p.L396R", "sequence-type": "addgene-full", "addgene_id": "81414", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -436835,7 +463312,10 @@ "plasmid_name": "pEPYCeGM0012", "sequence-type": "addgene-full", "addgene_id": "196146", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attL1", @@ -436859,7 +463339,10 @@ "plasmid_name": "p3E-rab3ab", "sequence-type": "addgene-full", "addgene_id": "109704", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -436890,7 +463373,10 @@ "plasmid_name": "pCWX-R4-DEST-R2-PG", "sequence-type": "depositor-full", "addgene_id": "45957", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-61779-095-9_8", + "https://www.ncbi.nlm.nih.gov/pubmed/21590398" + ], "kit": null, "att_sites": [ "attR2", @@ -436948,7 +463434,10 @@ "plasmid_name": "pBA cHA-FG1", "sequence-type": "addgene-full", "addgene_id": "118665", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -436992,7 +463481,10 @@ "plasmid_name": "pENTR2b-mTurquoise2", "sequence-type": "addgene-full", "addgene_id": "191014", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg1840", + "https://www.ncbi.nlm.nih.gov/pubmed/37436978" + ], "kit": null, "att_sites": [ "attL1", @@ -437021,7 +463513,9 @@ "plasmid_name": "pDONR221-DDX5", "sequence-type": "addgene-full", "addgene_id": "166163", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -437052,7 +463546,10 @@ "plasmid_name": "pDONR223-ZNF219", "sequence-type": "addgene-full", "addgene_id": "88118", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -437081,7 +463578,10 @@ "plasmid_name": "pDONR223_GABPB1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82972", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -437110,7 +463610,10 @@ "plasmid_name": "VanGlow-GL", "sequence-type": "depositor-full", "addgene_id": "83342", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.01.014", + "https://www.ncbi.nlm.nih.gov/pubmed/28245922" + ], "kit": null, "att_sites": [ "attR1", @@ -437143,7 +463646,10 @@ "plasmid_name": "MAC3-FGFR1", "sequence-type": "addgene-full", "addgene_id": "222611", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "att_sites": [ "attB1", @@ -437188,7 +463694,10 @@ "plasmid_name": "IO801: pMVP (L5-L4) 3x FLAG epitope tag", "sequence-type": "addgene-full", "addgene_id": "121702", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -437221,7 +463730,10 @@ "plasmid_name": "pLVU/RED", "sequence-type": "addgene-full", "addgene_id": "24178", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2010.01.002", + "https://www.ncbi.nlm.nih.gov/pubmed/20132838" + ], "kit": null, "att_sites": [ "attR1", @@ -437282,7 +463794,10 @@ "plasmid_name": "pGWB535", "sequence-type": "depositor-full", "addgene_id": "74873", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -437329,7 +463844,10 @@ "plasmid_name": "pMMK ENTR 4 CMV mTagBFP", "sequence-type": "addgene-full", "addgene_id": "206279", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL2", @@ -437359,7 +463877,10 @@ "plasmid_name": "AAEL006636 DSK R", "sequence-type": "addgene-full", "addgene_id": "115392", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115392.addgene-full.gb" }, @@ -437368,7 +463889,10 @@ "plasmid_name": "pLEX_305-N-dTAG", "sequence-type": "addgene-full", "addgene_id": "91797", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0021-8", + "https://www.ncbi.nlm.nih.gov/pubmed/29581585" + ], "kit": null, "att_sites": [ "attR1", @@ -437433,7 +463957,10 @@ "plasmid_name": "pYPQ142", "sequence-type": "depositor-full", "addgene_id": "69294", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL2", @@ -437465,7 +463992,9 @@ "plasmid_name": "pDONR221-TM9SF3", "sequence-type": "addgene-full", "addgene_id": "166218", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -437497,7 +464026,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp12", "sequence-type": "addgene-full", "addgene_id": "168969", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -437527,7 +464059,10 @@ "plasmid_name": "pAFMW-Nbr[K216E]", "sequence-type": "addgene-full", "addgene_id": "188600", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -437557,7 +464092,9 @@ "plasmid_name": "pDONR221 hNLRP3-mNG-STOP", "sequence-type": "addgene-full", "addgene_id": "218644", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "att_sites": [ "attL1", @@ -437587,7 +464124,6 @@ "plasmid_name": "R777-E058 Hs.EIF4EBP2-nostop", "sequence-type": "depositor-full", "addgene_id": "70342", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -437615,7 +464151,10 @@ "plasmid_name": "pDD377", "sequence-type": "addgene-full", "addgene_id": "91823", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "att_sites": [ "attL1", @@ -437646,7 +464185,10 @@ "plasmid_name": "pENTR D-TOPO-C3_19", "sequence-type": "depositor-full", "addgene_id": "60265", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -437677,7 +464219,10 @@ "plasmid_name": "pDONR221-SLC44A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161079", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -437708,7 +464253,10 @@ "plasmid_name": "JN302: pMVP/SB/Puro-DEST", "sequence-type": "addgene-full", "addgene_id": "121865", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -437748,7 +464296,10 @@ "plasmid_name": "pJA254", "sequence-type": "depositor-full", "addgene_id": "21507", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "att_sites": [ "attL4", @@ -437781,7 +464332,10 @@ "plasmid_name": "plenti-CAG-IRF4-FLAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "107389", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -437843,7 +464397,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-HIPK4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158185", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -437909,7 +464462,10 @@ "plasmid_name": "TFORF3192", "sequence-type": "addgene-full", "addgene_id": "144668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -437969,7 +464525,10 @@ "plasmid_name": "pAG304GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14208", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -438027,7 +464586,10 @@ "plasmid_name": "TFORF3112", "sequence-type": "addgene-full", "addgene_id": "144588", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -438087,7 +464649,10 @@ "plasmid_name": "pHAGE-ALK-F1174L", "sequence-type": "addgene-full", "addgene_id": "116108", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -438137,7 +464702,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP1_nostop", "sequence-type": "addgene-full", "addgene_id": "149304", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -438161,7 +464729,10 @@ "plasmid_name": "pDONR221-SLC7A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161399", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -438192,7 +464763,10 @@ "plasmid_name": "pDONR221-SLC4A10_STOP", "sequence-type": "depositor-full", "addgene_id": "161474", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -438223,7 +464797,10 @@ "plasmid_name": "pDONR221-SLC30A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161302", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -438254,7 +464831,6 @@ "plasmid_name": "p42Nat 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58549", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -438311,7 +464887,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.G34E", "sequence-type": "addgene-full", "addgene_id": "81727", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -438344,7 +464923,10 @@ "plasmid_name": "pEF5B-FRT-GFP-\u03b1TAT1", "sequence-type": "addgene-full", "addgene_id": "27099", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1013728107", + "https://www.ncbi.nlm.nih.gov/pubmed/21068373" + ], "kit": null, "att_sites": [ "attB1", @@ -438393,7 +464975,10 @@ "plasmid_name": "CPEB1", "sequence-type": "addgene-full", "addgene_id": "155472", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -438436,7 +465021,10 @@ "plasmid_name": "TFORF3037", "sequence-type": "addgene-full", "addgene_id": "144513", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -438496,7 +465084,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp15", "sequence-type": "addgene-full", "addgene_id": "168921", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -438525,7 +465116,10 @@ "plasmid_name": "pHAGE-BRAF-Q609E", "sequence-type": "addgene-full", "addgene_id": "116193", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -438580,7 +465174,10 @@ "plasmid_name": "pHAGE-EGFR-L833V", "sequence-type": "addgene-full", "addgene_id": "116273", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -438634,7 +465231,10 @@ "plasmid_name": "TFORF3471", "sequence-type": "addgene-full", "addgene_id": "144947", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -438694,7 +465294,10 @@ "plasmid_name": "pENT-L1-Kozak-lacZ-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186359", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attL1", @@ -438725,7 +465328,6 @@ "plasmid_name": "pCW57.1_V5_BirA*_FLAG_Ct", "sequence-type": "addgene-full", "addgene_id": "194071", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -438783,7 +465385,10 @@ "plasmid_name": "pmyc-MOV10", "sequence-type": "depositor-full", "addgene_id": "10977", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2005.10.048", + "https://www.ncbi.nlm.nih.gov/pubmed/16289642" + ], "kit": null, "att_sites": [ "attB1", @@ -438832,7 +465437,10 @@ "plasmid_name": "pKG-GW2-NgBR R290H", "sequence-type": "addgene-full", "addgene_id": "203167", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "att_sites": [ "attB1", @@ -438863,7 +465471,10 @@ "plasmid_name": "pAB-HDAC5(mut-H-A)", "sequence-type": "addgene-full", "addgene_id": "114397", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "att_sites": [ "attB1", @@ -438899,7 +465510,6 @@ "plasmid_name": "pgLAP1", "sequence-type": "depositor-full", "addgene_id": "19702", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -438952,7 +465562,10 @@ "plasmid_name": "pDONR223_SAMHD1_p.D218H", "sequence-type": "addgene-full", "addgene_id": "81513", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -438984,7 +465597,10 @@ "plasmid_name": "pDEST-CMV GFP-LC3B Q116P G120", "sequence-type": "addgene-full", "addgene_id": "129290", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attB1", @@ -439037,7 +465653,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1", "sequence-type": "addgene-full", "addgene_id": "187120", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -439082,7 +465701,10 @@ "plasmid_name": "pDONR221-SLC25A39_STOP", "sequence-type": "addgene-full", "addgene_id": "161136", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -439113,7 +465735,10 @@ "plasmid_name": "pAG423GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14246", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -439172,7 +465797,10 @@ "plasmid_name": "pENTR-R4r-HCN1miR-EGFP-R3r", "sequence-type": "depositor-full", "addgene_id": "32586", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attR3", @@ -439211,7 +465839,10 @@ "plasmid_name": "TFORF3417", "sequence-type": "addgene-full", "addgene_id": "144893", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -439271,7 +465902,10 @@ "plasmid_name": "TFORF3251", "sequence-type": "addgene-full", "addgene_id": "144727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -439331,7 +465965,10 @@ "plasmid_name": "p3E-2xFYVE_hrs", "sequence-type": "depositor-full", "addgene_id": "67676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attL3", @@ -439362,7 +465999,9 @@ "plasmid_name": "pMpGWB230", "sequence-type": "depositor-full", "addgene_id": "68621", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -439410,7 +466049,10 @@ "plasmid_name": "actc1b-mKate2-rab18a", "sequence-type": "addgene-full", "addgene_id": "109603", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -439452,7 +466094,10 @@ "plasmid_name": "pDON221 ORF3a Q57H", "sequence-type": "addgene-full", "addgene_id": "180072", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -439483,7 +466128,10 @@ "plasmid_name": "pLSLZ", "sequence-type": "depositor-full", "addgene_id": "51495", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attB1", @@ -439532,7 +466180,10 @@ "plasmid_name": "TFORF3332", "sequence-type": "addgene-full", "addgene_id": "144808", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB2" @@ -439590,7 +466241,10 @@ "plasmid_name": "pDONR221_SLCO2A1", "sequence-type": "addgene-full", "addgene_id": "131949", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -439621,7 +466275,10 @@ "plasmid_name": "pcDNA3.2/NS4A-2K-NS4B", "sequence-type": "addgene-full", "addgene_id": "120828", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -439671,7 +466328,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-7", "sequence-type": "depositor-full", "addgene_id": "46716", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -439721,7 +466381,10 @@ "plasmid_name": "pDONR223_STAG2_p.L997W", "sequence-type": "addgene-full", "addgene_id": "81588", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -439753,7 +466416,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.R108H", "sequence-type": "addgene-full", "addgene_id": "82875", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -439782,7 +466448,10 @@ "plasmid_name": "pHvL1P3GA", "sequence-type": "addgene-full", "addgene_id": "112027", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-8944-7_14", + "https://www.ncbi.nlm.nih.gov/pubmed/30460568" + ], "kit": null, "att_sites": [ "attB2" @@ -439814,7 +466483,10 @@ "plasmid_name": "pENTR221-H1-sgHTT1-U6-sgGFP2-7SK-sgCas9", "sequence-type": "addgene-full", "addgene_id": "87917", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "att_sites": [ "attL1", @@ -439851,7 +466523,10 @@ "plasmid_name": "pDONR223_VHL_p.L158V", "sequence-type": "addgene-full", "addgene_id": "81668", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -439883,7 +466558,10 @@ "plasmid_name": "pDONR221-SLC1A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161044", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -439914,7 +466592,10 @@ "plasmid_name": "KJ801: pMVP/Hygro-DEST", "sequence-type": "addgene-full", "addgene_id": "121858", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -439958,7 +466639,10 @@ "plasmid_name": "pCMB-APr", "sequence-type": "depositor-full", "addgene_id": "61183", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -440003,7 +466687,10 @@ "plasmid_name": "pDONR223_SLC2A3_p.K49N", "sequence-type": "addgene-full", "addgene_id": "81461", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -440035,7 +466722,10 @@ "plasmid_name": "TFORF3179", "sequence-type": "addgene-full", "addgene_id": "144655", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -440095,7 +466785,10 @@ "plasmid_name": "pHAGE-BRAF-D594A", "sequence-type": "addgene-full", "addgene_id": "116135", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -440150,7 +466843,10 @@ "plasmid_name": "PB-TET-mKLF4", "sequence-type": "depositor-full", "addgene_id": "20906", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "file": "data/addgene_plasmids/20906.depositor-full.gb" }, @@ -440159,7 +466855,10 @@ "plasmid_name": "actc1b-mKate2-MTM1", "sequence-type": "addgene-full", "addgene_id": "109491", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -440201,7 +466900,10 @@ "plasmid_name": "pMOS012E: Entry vector for: Grx1-roGFP1-iE_ER glutathione redox sensor (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163074", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -440237,7 +466939,10 @@ "plasmid_name": "pDEST17-UbE2D3", "sequence-type": "addgene-full", "addgene_id": "15784", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "att_sites": [ "attB1", @@ -440269,7 +466974,10 @@ "plasmid_name": "pMDJ39 - Peft-3 Cre (PATCs)", "sequence-type": "addgene-full", "addgene_id": "191381", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "att_sites": [ "attB1", @@ -440304,7 +467012,10 @@ "plasmid_name": "pMuLE ENTR 7SK L5-L2", "sequence-type": "depositor-full", "addgene_id": "62108", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62108.depositor-full.gb" }, @@ -440313,7 +467024,10 @@ "plasmid_name": "pLenti CMV Hygro DEST (w117-1)", "sequence-type": "addgene-full", "addgene_id": "17454", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -440378,7 +467092,10 @@ "plasmid_name": "pDONR223_A4GALT_WT", "sequence-type": "addgene-full", "addgene_id": "81835", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -440410,7 +467127,10 @@ "plasmid_name": "pCM1.41", "sequence-type": "depositor-full", "addgene_id": "21379", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL4", @@ -440441,7 +467161,10 @@ "plasmid_name": "Active Wnt6-V5", "sequence-type": "depositor-full", "addgene_id": "43815", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -440489,7 +467212,10 @@ "plasmid_name": "pAFMW-Nbr[K284A]", "sequence-type": "addgene-full", "addgene_id": "188595", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -440519,7 +467245,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP6_stop", "sequence-type": "addgene-full", "addgene_id": "168548", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -440548,7 +467277,9 @@ "plasmid_name": "pMpGWB122", "sequence-type": "depositor-full", "addgene_id": "68576", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -440595,7 +467326,10 @@ "plasmid_name": "pSAM2_mCherry_Isl1", "sequence-type": "addgene-full", "addgene_id": "72696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -440658,7 +467392,10 @@ "plasmid_name": "pDONR223_ARAF_p.S214C", "sequence-type": "addgene-full", "addgene_id": "82907", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -440687,7 +467424,10 @@ "plasmid_name": "LD001: pMVP (L3-L2) eYFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121777", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -440725,7 +467465,6 @@ "plasmid_name": "Hs.KRAS4b S181E", "sequence-type": "depositor-full", "addgene_id": "83138", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -440754,7 +467493,10 @@ "plasmid_name": "pDONR221-SLC2A6_STOP", "sequence-type": "depositor-full", "addgene_id": "161244", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -440785,7 +467527,10 @@ "plasmid_name": "pLenti CMV Puro DHFR.cHSF1", "sequence-type": "addgene-full", "addgene_id": "134739", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.28652", + "https://www.ncbi.nlm.nih.gov/pubmed/28949290" + ], "kit": null, "att_sites": [ "attB1", @@ -440849,7 +467594,10 @@ "plasmid_name": "pCW57.1-p37-SHPmut-FLAG", "sequence-type": "addgene-full", "addgene_id": "225502", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adl6082", + "https://www.ncbi.nlm.nih.gov/pubmed/38701207" + ], "kit": null, "att_sites": [ "attR2" @@ -440902,7 +467650,6 @@ "plasmid_name": "V5-WT-long-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192087", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -440953,7 +467700,6 @@ "plasmid_name": "pAM-35s-CBL8-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102399", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -440986,7 +467732,10 @@ "plasmid_name": "pDONR207 SARS-CoV2 TEV-NSP3", "sequence-type": "addgene-full", "addgene_id": "154402", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1" @@ -441009,7 +467758,10 @@ "plasmid_name": "pDONR223_PIK3R3_p.P127L", "sequence-type": "addgene-full", "addgene_id": "82767", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -441038,7 +467790,10 @@ "plasmid_name": "tetO-TBX5", "sequence-type": "addgene-full", "addgene_id": "46032", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "att_sites": [ "attB1", @@ -441100,7 +467855,10 @@ "plasmid_name": "pLX304_zeo", "sequence-type": "addgene-full", "addgene_id": "160092", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attR1", @@ -441164,7 +467922,10 @@ "plasmid_name": "pENTR-ZmIAA29 (yeast codon optimized)", "sequence-type": "addgene-full", "addgene_id": "188441", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -441195,7 +467956,10 @@ "plasmid_name": "pMuLE ENTR CMV mCherry L5-L2", "sequence-type": "depositor-full", "addgene_id": "62146", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -441231,7 +467995,6 @@ "plasmid_name": "R777-E127 Hs.MAPK3", "sequence-type": "depositor-full", "addgene_id": "70411", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -441260,7 +468023,10 @@ "plasmid_name": "pDONR221_SLC1A5", "sequence-type": "addgene-full", "addgene_id": "131974", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -441292,7 +468058,10 @@ "plasmid_name": "TFORF3305", "sequence-type": "addgene-full", "addgene_id": "144781", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -441354,7 +468123,10 @@ "plasmid_name": "TFORF3359", "sequence-type": "addgene-full", "addgene_id": "144835", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -441414,7 +468186,10 @@ "plasmid_name": "pHAGE-EGFR-S229C", "sequence-type": "addgene-full", "addgene_id": "116301", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -441464,7 +468239,10 @@ "plasmid_name": "pMXs-hu-c-Myc-dN1", "sequence-type": "depositor-full", "addgene_id": "50773", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "att_sites": [ "attB1", @@ -441494,7 +468272,10 @@ "plasmid_name": "pCM5.52", "sequence-type": "depositor-full", "addgene_id": "19381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -441525,7 +468306,9 @@ "plasmid_name": "pGem-nHyPer2:sHyper2", "sequence-type": "addgene-full", "addgene_id": "84737", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "att_sites": [ "attB1", @@ -441570,7 +468353,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hSFRP1-GST", "sequence-type": "addgene-full", "addgene_id": "189543", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -441621,7 +468403,10 @@ "plasmid_name": "pDONR223_EGFR_p.T790M", "sequence-type": "addgene-full", "addgene_id": "82848", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -441651,7 +468436,10 @@ "plasmid_name": "pDONR221-SLC22A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161190", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -441682,7 +468470,10 @@ "plasmid_name": "pEBTetD-SNAP-\u03b1-tubulin", "sequence-type": "addgene-full", "addgene_id": "136792", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -441727,7 +468518,10 @@ "plasmid_name": "pEBTet-SNAP-Cep131", "sequence-type": "addgene-full", "addgene_id": "136826", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -441773,7 +468567,10 @@ "plasmid_name": "pFRT/TO/GFP-SCAF4 (CRISPR_resistant)", "sequence-type": "addgene-full", "addgene_id": "122471", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "att_sites": [ "attB1", @@ -441820,7 +468617,10 @@ "plasmid_name": "pDEST26 Ago2 S387E", "sequence-type": "depositor-full", "addgene_id": "59906", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2013.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/23603119" + ], "kit": null, "att_sites": [ "attB1", @@ -441869,7 +468669,10 @@ "plasmid_name": "pDONR223_PTEN_p.R233Q", "sequence-type": "addgene-full", "addgene_id": "81655", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -441901,7 +468704,10 @@ "plasmid_name": "pDONR221-ZNF732", "sequence-type": "depositor-full", "addgene_id": "101446", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -441932,7 +468738,10 @@ "plasmid_name": "pDONR221-SLC27A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161270", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -441963,7 +468772,10 @@ "plasmid_name": "AdMKP-3 S159A", "sequence-type": "addgene-full", "addgene_id": "131520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mce.2012.03.025", + "https://www.ncbi.nlm.nih.gov/pubmed/22521266" + ], "kit": null, "att_sites": [ "attB1", @@ -441999,7 +468811,6 @@ "plasmid_name": "Hs.NRAS G12D", "sequence-type": "depositor-full", "addgene_id": "83176", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -442024,7 +468835,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF3a", "sequence-type": "addgene-full", "addgene_id": "168853", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -442053,7 +468867,10 @@ "plasmid_name": "pME-Lifeact", "sequence-type": "addgene-full", "addgene_id": "109545", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -442086,7 +468903,10 @@ "plasmid_name": "TFORF2985", "sequence-type": "addgene-full", "addgene_id": "144461", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -442146,7 +468966,10 @@ "plasmid_name": "pcDNA3.1 GW-mCit-PA", "sequence-type": "addgene-full", "addgene_id": "113449", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "att_sites": [ "attR1", @@ -442202,7 +469025,10 @@ "plasmid_name": "pDONR221_SLC36A4", "sequence-type": "addgene-full", "addgene_id": "132143", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -442233,7 +469059,6 @@ "plasmid_name": "EEF1A2 - I438M in pENTR", "sequence-type": "addgene-full", "addgene_id": "216591", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -442262,7 +469087,10 @@ "plasmid_name": "Flag-HA-USP10", "sequence-type": "addgene-full", "addgene_id": "22543", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -442308,7 +469136,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0490-luc2", "sequence-type": "addgene-full", "addgene_id": "214641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -442352,7 +469183,10 @@ "plasmid_name": "pLD-puro-CcVA", "sequence-type": "addgene-full", "addgene_id": "24588", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.M000002-MCP201", + "https://www.ncbi.nlm.nih.gov/pubmed/20305087" + ], "kit": null, "att_sites": [ "attR1", @@ -442419,7 +469253,10 @@ "plasmid_name": "pDONR223_SUV39H1_WT", "sequence-type": "addgene-full", "addgene_id": "82236", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -442448,7 +469285,6 @@ "plasmid_name": "R777-E241 Hs.RASGRF2", "sequence-type": "depositor-full", "addgene_id": "70525", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -442476,7 +469312,10 @@ "plasmid_name": "pAG424GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14296", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -442538,7 +469377,10 @@ "plasmid_name": "pAG426GAL-ccdB-EGFP", "sequence-type": "addgene-full", "addgene_id": "14203", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -442602,7 +469444,10 @@ "plasmid_name": "pLD-puro-Cc-TARDBP-A315T_VA", "sequence-type": "addgene-full", "addgene_id": "141329", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "att_sites": [ "attB1", @@ -442664,7 +469509,6 @@ "plasmid_name": "pDD373", "sequence-type": "addgene-full", "addgene_id": "137021", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -442695,7 +469539,10 @@ "plasmid_name": "pWZL Neo Myr Flag PIK3CB", "sequence-type": "addgene-full", "addgene_id": "20573", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -442738,7 +469585,10 @@ "plasmid_name": "pAG303-Gal-PR50", "sequence-type": "depositor-full", "addgene_id": "84905", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "att_sites": [ "attB1", @@ -442789,7 +469639,10 @@ "plasmid_name": "pDONR221-ZNF716", "sequence-type": "addgene-full", "addgene_id": "101481", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -442820,7 +469673,10 @@ "plasmid_name": "pDONR221_SLC44A4", "sequence-type": "addgene-full", "addgene_id": "132238", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -442851,7 +469707,10 @@ "plasmid_name": "pDONR223_C1orf150_p.Y89N", "sequence-type": "addgene-full", "addgene_id": "81304", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -442863,7 +469722,10 @@ "plasmid_name": "MAC_N_ELF2", "sequence-type": "addgene-full", "addgene_id": "187737", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -442908,7 +469770,10 @@ "plasmid_name": "pDest-305 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161895", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -442953,7 +469818,10 @@ "plasmid_name": "pENTR1a-MTS-jAspSnFR3-mRuby3", "sequence-type": "addgene-full", "addgene_id": "203490", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "att_sites": [ "attL1", @@ -442981,7 +469849,10 @@ "plasmid_name": "pCMU-AUTr", "sequence-type": "depositor-full", "addgene_id": "61204", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -443027,7 +469898,10 @@ "plasmid_name": "pCellFree_G06_ZIKVC", "sequence-type": "addgene-full", "addgene_id": "145349", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -443062,7 +469936,10 @@ "plasmid_name": "pDL14", "sequence-type": "addgene-full", "addgene_id": "175896", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -443093,7 +469970,10 @@ "plasmid_name": "pENTR-L3-eSpCas9n(1.1)-2A-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141052", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -443124,7 +470004,10 @@ "plasmid_name": "pDONR223-ZNF800", "sequence-type": "addgene-full", "addgene_id": "88573", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -443153,7 +470036,10 @@ "plasmid_name": "pPB-cT3G-cERP2-NR1H2", "sequence-type": "addgene-full", "addgene_id": "192919", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -443199,7 +470085,10 @@ "plasmid_name": "pHAGE-RAC1-P29S", "sequence-type": "addgene-full", "addgene_id": "116650", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -443255,7 +470144,10 @@ "plasmid_name": "pDONR223_AXIN2_WT", "sequence-type": "addgene-full", "addgene_id": "82099", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -443285,7 +470177,10 @@ "plasmid_name": "R979-X57-008: Hs.KRAS4b(1-169)", "sequence-type": "addgene-full", "addgene_id": "159690", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-019-46846-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31324887" + ], "kit": null, "att_sites": [ "attB1", @@ -443319,7 +470214,10 @@ "plasmid_name": "bactin:GFP-DCX", "sequence-type": "addgene-full", "addgene_id": "105961", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "att_sites": [ "attB1", @@ -443370,7 +470268,10 @@ "plasmid_name": "pGMCKq20-T38S38-0X", "sequence-type": "depositor-full", "addgene_id": "49522", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "att_sites": [ "attB1", @@ -443403,7 +470304,10 @@ "plasmid_name": "pHAGE-PIK3CA-D939G", "sequence-type": "addgene-full", "addgene_id": "116464", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -443457,7 +470361,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP13", "sequence-type": "addgene-full", "addgene_id": "141266", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -443486,7 +470393,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) eGFP", "sequence-type": "addgene-full", "addgene_id": "107505", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB2" @@ -443549,7 +470459,10 @@ "plasmid_name": "pCM5.37", "sequence-type": "depositor-full", "addgene_id": "17253", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -443580,7 +470493,10 @@ "plasmid_name": "pDEST-mCherry-LacR-BRCA1", "sequence-type": "addgene-full", "addgene_id": "71115", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71115.addgene-full.gb" }, @@ -443589,7 +470505,10 @@ "plasmid_name": "pHAGE-RAD50", "sequence-type": "addgene-full", "addgene_id": "116784", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -443643,7 +470562,10 @@ "plasmid_name": "pSEM238", "sequence-type": "addgene-full", "addgene_id": "161515", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000349", + "https://www.ncbi.nlm.nih.gov/pubmed/33437931" + ], "kit": null, "att_sites": [ "attB1", @@ -443676,7 +470598,10 @@ "plasmid_name": "R701-X19-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) G12V", "sequence-type": "addgene-full", "addgene_id": "159570", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -443724,7 +470649,10 @@ "plasmid_name": "pcDNA5-FRT-GFP-mCherry-3pGW", "sequence-type": "depositor-full", "addgene_id": "53965", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2014.03.001", + "https://www.ncbi.nlm.nih.gov/pubmed/24656821" + ], "kit": null, "att_sites": [ "attR1", @@ -443774,7 +470702,10 @@ "plasmid_name": "pXL-CAG-mBirA272-NRX3b", "sequence-type": "depositor-full", "addgene_id": "43921", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0052823", + "https://www.ncbi.nlm.nih.gov/pubmed/23457442" + ], "kit": null, "att_sites": [ "attB1", @@ -443819,7 +470750,10 @@ "plasmid_name": "pDONR221_SLC35F4", "sequence-type": "addgene-full", "addgene_id": "132097", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -443850,7 +470784,6 @@ "plasmid_name": "pLEX307-TMPRSS4-puro", "sequence-type": "addgene-full", "addgene_id": "158472", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -443911,7 +470844,9 @@ "plasmid_name": "p3E-FRB-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82594", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -443943,7 +470878,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-pFOGc::RfA-venus", "sequence-type": "addgene-full", "addgene_id": "186401", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -443984,7 +470922,10 @@ "plasmid_name": "pDEST-CMV-N-Tandem-mCherry-EGFP", "sequence-type": "addgene-full", "addgene_id": "123216", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -444047,7 +470988,10 @@ "plasmid_name": "pDONR-IAA7", "sequence-type": "depositor-full", "addgene_id": "83871", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -444078,7 +471022,6 @@ "plasmid_name": "pENTR-R2L3-IRES-Zeo-pA", "sequence-type": "addgene-full", "addgene_id": "139530", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -444116,7 +471059,10 @@ "plasmid_name": "MCAM-GFP", "sequence-type": "addgene-full", "addgene_id": "214475", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E23-06-0255", + "https://www.ncbi.nlm.nih.gov/pubmed/38117590" + ], "kit": null, "att_sites": [ "attB1", @@ -444181,7 +471127,6 @@ "plasmid_name": "pcDNA-SUN2 EGFP", "sequence-type": "addgene-full", "addgene_id": "187678", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -444233,7 +471178,10 @@ "plasmid_name": "pAC155-pCR8-sgExpression", "sequence-type": "depositor-full", "addgene_id": "49045", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attL1", @@ -444265,7 +471213,10 @@ "plasmid_name": "p416PGK1-OsCYP711A2(pYL770)", "sequence-type": "addgene-full", "addgene_id": "178301", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -444308,7 +471259,10 @@ "plasmid_name": "His8:MBP-tev-Ile-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83392", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.14497", + "https://www.ncbi.nlm.nih.gov/pubmed/28277608" + ], "kit": null, "att_sites": [ "attB1", @@ -444347,7 +471301,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(L301R/V303R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128658", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "att_sites": [ "attB1", @@ -444397,7 +471354,10 @@ "plasmid_name": "pcDNA5FRT/TO-Ufd1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113474", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -444441,7 +471401,10 @@ "plasmid_name": "pSGE_712_Ubi-1-Trl_dCP", "sequence-type": "depositor-full", "addgene_id": "71159", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -444474,7 +471437,10 @@ "plasmid_name": "pMEclecl14aP1gfp", "sequence-type": "addgene-full", "addgene_id": "90123", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL1", @@ -444511,7 +471477,10 @@ "plasmid_name": "pDONR221-kcnma1a", "sequence-type": "addgene-full", "addgene_id": "164951", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.329", + "https://www.ncbi.nlm.nih.gov/pubmed/33728688" + ], "kit": null, "att_sites": [ "attL1", @@ -444542,7 +471511,10 @@ "plasmid_name": "pDONR221-SLC7A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161467", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -444573,7 +471545,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP16", "sequence-type": "addgene-full", "addgene_id": "169389", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -444616,7 +471587,10 @@ "plasmid_name": "GABPA_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176999", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -444671,7 +471645,10 @@ "plasmid_name": "pCFJ2307 - [1-2] ENTR - Fluor - ce-tagRFP-T(1 intron, syntrons(3), NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159856", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -444704,7 +471681,10 @@ "plasmid_name": "pE3c", "sequence-type": "depositor-full", "addgene_id": "17463", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -444729,7 +471709,10 @@ "plasmid_name": "pAG426GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14372", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -444741,7 +471724,10 @@ "plasmid_name": "pRATIO4214", "sequence-type": "addgene-full", "addgene_id": "141314", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -444790,7 +471776,10 @@ "plasmid_name": "pGC225", "sequence-type": "depositor-full", "addgene_id": "19636", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -444828,7 +471817,10 @@ "plasmid_name": "pHAGE-PIK3CA-N345I", "sequence-type": "addgene-full", "addgene_id": "116516", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -444883,7 +471875,10 @@ "plasmid_name": "pWOL-GW", "sequence-type": "addgene-full", "addgene_id": "209373", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -444923,7 +471918,10 @@ "plasmid_name": "pDONR221_SLC5A10", "sequence-type": "addgene-full", "addgene_id": "132205", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -444954,7 +471952,10 @@ "plasmid_name": "pDONR223-PRKCI", "sequence-type": "addgene-full", "addgene_id": "23828", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -444986,7 +471987,10 @@ "plasmid_name": "Flag-HA-USP45", "sequence-type": "addgene-full", "addgene_id": "22605", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -445035,7 +472039,10 @@ "plasmid_name": "pDONR223_XIAP_WT", "sequence-type": "addgene-full", "addgene_id": "82170", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -445064,7 +472071,10 @@ "plasmid_name": "pDONR223_PIK3IP1_p.G185E", "sequence-type": "addgene-full", "addgene_id": "81339", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -445096,7 +472106,10 @@ "plasmid_name": "pENTR-EF1adCas9VP64_T2A_MS2p65HSF1-IRESbsdpA", "sequence-type": "addgene-full", "addgene_id": "112922", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-018-1581-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30477585" + ], "kit": null, "att_sites": [ "attL1", @@ -445137,7 +472150,10 @@ "plasmid_name": "pDONR223_SETD8_WT", "sequence-type": "addgene-full", "addgene_id": "82290", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -445166,7 +472182,10 @@ "plasmid_name": "C231-E02: attB2r-NanoLuc-attB3", "sequence-type": "addgene-full", "addgene_id": "162901", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -445194,7 +472213,10 @@ "plasmid_name": "pDONR223 GABARAPL1 G116A", "sequence-type": "addgene-full", "addgene_id": "123084", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -445223,7 +472245,10 @@ "plasmid_name": "pPB-cT3G-cERP2-FOS", "sequence-type": "addgene-full", "addgene_id": "192924", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -445269,7 +472294,10 @@ "plasmid_name": "pDEST-FRT/T0-Flag-BRCA1", "sequence-type": "depositor-full", "addgene_id": "71117", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1", @@ -445312,7 +472340,10 @@ "plasmid_name": "pLX304-ARNT-d414", "sequence-type": "addgene-full", "addgene_id": "203579", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw1026", + "https://www.ncbi.nlm.nih.gov/pubmed/30872525" + ], "kit": null, "att_sites": [ "attB1", @@ -445371,7 +472402,10 @@ "plasmid_name": "TFORF3533", "sequence-type": "depositor-full", "addgene_id": "145009", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -445431,7 +472465,10 @@ "plasmid_name": "pcDNA5 frt/to N-BioTAP-C-BRD4-NUT", "sequence-type": "addgene-full", "addgene_id": "171630", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1702086114", + "https://www.ncbi.nlm.nih.gov/pubmed/28484033" + ], "kit": null, "att_sites": [ "attB1", @@ -445474,7 +472511,6 @@ "plasmid_name": "R777-E031 Hs.CYTH2", "sequence-type": "depositor-full", "addgene_id": "70315", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -445502,7 +472538,10 @@ "plasmid_name": "pHAGE-PIK3CA-C901F", "sequence-type": "addgene-full", "addgene_id": "116459", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -445556,7 +472595,6 @@ "plasmid_name": "pDEST26-hDHX58-Nluc", "sequence-type": "addgene-full", "addgene_id": "197626", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -445607,7 +472645,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag1_nostop", "sequence-type": "addgene-full", "addgene_id": "153173", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -445638,7 +472679,10 @@ "plasmid_name": "pCPP5910", "sequence-type": "addgene-full", "addgene_id": "128717", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.04.037", + "https://www.ncbi.nlm.nih.gov/pubmed/29742421" + ], "kit": null, "att_sites": [ "attL1", @@ -445669,7 +472713,10 @@ "plasmid_name": "pDONR221-ZNF646", "sequence-type": "depositor-full", "addgene_id": "101625", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -445699,7 +472746,10 @@ "plasmid_name": "pDONR221_SLC25A52", "sequence-type": "addgene-full", "addgene_id": "132031", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -445730,7 +472780,6 @@ "plasmid_name": "pDONR221-olig1", "sequence-type": "addgene-full", "addgene_id": "192744", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -445761,7 +472810,10 @@ "plasmid_name": "SFRS17A-1", "sequence-type": "addgene-full", "addgene_id": "156011", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -445804,7 +472856,10 @@ "plasmid_name": "pGC31", "sequence-type": "depositor-full", "addgene_id": "19678", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -445840,7 +472895,10 @@ "plasmid_name": "pGWB433", "sequence-type": "depositor-full", "addgene_id": "74824", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -445888,7 +472946,10 @@ "plasmid_name": "CYFIP2.mCherry", "sequence-type": "addgene-full", "addgene_id": "122052", - "references": [], + "references": [ + "https://doi.org/10.1038/tp.2014.16", + "https://www.ncbi.nlm.nih.gov/pubmed/24667445" + ], "kit": null, "att_sites": [ "attB1", @@ -445929,7 +472990,10 @@ "plasmid_name": "MAC_C_MGST3", "sequence-type": "addgene-full", "addgene_id": "111670", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -445974,7 +473038,10 @@ "plasmid_name": "pGWT35S-KON168-MXMT", "sequence-type": "addgene-full", "addgene_id": "182727", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "att_sites": [ "attB1", @@ -446016,7 +473083,10 @@ "plasmid_name": "pHAGE-CDH1", "sequence-type": "addgene-full", "addgene_id": "116722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -446066,7 +473136,10 @@ "plasmid_name": "pTol2CG2-QUASM1:GFPNLS-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155123", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "att_sites": [ "attB1", @@ -446114,7 +473187,6 @@ "plasmid_name": "IDG_CACNG4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161653", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -446173,7 +473245,9 @@ "plasmid_name": "pDEST mfap4:turquoise2", "sequence-type": "addgene-full", "addgene_id": "135218", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "att_sites": [ "attB1", @@ -446215,7 +473289,10 @@ "plasmid_name": "pDONR223_REG1B_p.A82T", "sequence-type": "addgene-full", "addgene_id": "81276", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -446247,7 +473324,6 @@ "plasmid_name": "pDEST26-his-hSFRP1", "sequence-type": "addgene-full", "addgene_id": "189539", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -446294,7 +473370,10 @@ "plasmid_name": "pDONR223_KEAP1_p.P278S", "sequence-type": "addgene-full", "addgene_id": "82832", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -446323,7 +473402,10 @@ "plasmid_name": "pDONR221 Rpf1", "sequence-type": "depositor-full", "addgene_id": "63771", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -446355,7 +473437,6 @@ "plasmid_name": "LEMD3_BirA_Nterm", "sequence-type": "addgene-full", "addgene_id": "221518", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -446400,7 +473481,10 @@ "plasmid_name": "pDONR223_DCAF8_p.E63K", "sequence-type": "addgene-full", "addgene_id": "82786", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -446429,7 +473513,10 @@ "plasmid_name": "p35S_EVDm1", "sequence-type": "addgene-full", "addgene_id": "167121", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.220723.117", + "https://www.ncbi.nlm.nih.gov/pubmed/28784835" + ], "kit": null, "att_sites": [ "attB1", @@ -446467,7 +473554,10 @@ "plasmid_name": "pDEST-N2H-C2", "sequence-type": "addgene-full", "addgene_id": "125559", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11809-2", + "https://www.ncbi.nlm.nih.gov/pubmed/31467278" + ], "kit": null, "att_sites": [ "attR1", @@ -446515,7 +473605,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-Snaptag-RfA", "sequence-type": "addgene-full", "addgene_id": "186385", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -446559,7 +473648,10 @@ "plasmid_name": "pDONR221-ZNF799", "sequence-type": "depositor-full", "addgene_id": "101514", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -446590,7 +473682,10 @@ "plasmid_name": "pDONR-IAA20_no stop", "sequence-type": "depositor-full", "addgene_id": "83859", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -446621,7 +473716,10 @@ "plasmid_name": "pDONR223_PPIAL4G_WT", "sequence-type": "addgene-full", "addgene_id": "81900", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -446653,7 +473751,10 @@ "plasmid_name": "pDONR221-SLC30A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161291", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -446684,7 +473785,10 @@ "plasmid_name": "TFORF3004", "sequence-type": "addgene-full", "addgene_id": "144480", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -446743,7 +473847,9 @@ "plasmid_name": "pMpGWB432", "sequence-type": "depositor-full", "addgene_id": "68697", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -446792,7 +473898,10 @@ "plasmid_name": "TFORF3284", "sequence-type": "addgene-full", "addgene_id": "144760", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -446852,7 +473961,10 @@ "plasmid_name": "pDONR221_SLC25A48", "sequence-type": "addgene-full", "addgene_id": "131995", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -446883,7 +473995,10 @@ "plasmid_name": "pGTQL1221YC", "sequence-type": "depositor-full", "addgene_id": "61705", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2009.04048.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19843313" + ], "kit": null, "file": "data/addgene_plasmids/61705.depositor-full.gb" }, @@ -446892,7 +474007,6 @@ "plasmid_name": "R777-E259 Hs.RASSF4", "sequence-type": "depositor-full", "addgene_id": "70543", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -446920,7 +474034,10 @@ "plasmid_name": "pDONR221-SLC25A34_STOP", "sequence-type": "addgene-full", "addgene_id": "161171", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -446951,7 +474068,10 @@ "plasmid_name": "pJW4.13", "sequence-type": "depositor-full", "addgene_id": "62869", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62869.depositor-full.gb" }, @@ -446960,7 +474080,10 @@ "plasmid_name": "pDONR223_XPO1_p.E571K", "sequence-type": "addgene-full", "addgene_id": "81554", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -446992,7 +474115,10 @@ "plasmid_name": "p2R3a-Tq2CFP-OcsT", "sequence-type": "depositor-full", "addgene_id": "71268", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL3", @@ -447032,7 +474158,9 @@ "plasmid_name": "pDONR221-TFAM", "sequence-type": "addgene-full", "addgene_id": "166217", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -447063,7 +474191,10 @@ "plasmid_name": "pPV-EF1a-2xNLS-Cse2-Cas6-Cas3-iCA", "sequence-type": "addgene-full", "addgene_id": "134923", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-13226-x", + "https://www.ncbi.nlm.nih.gov/pubmed/31811138" + ], "kit": null, "att_sites": [ "attB1", @@ -447103,7 +474234,10 @@ "plasmid_name": "pMH-SFB-RNF8", "sequence-type": "addgene-full", "addgene_id": "99396", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/18001825" + ], "kit": null, "att_sites": [ "attB1", @@ -447142,7 +474276,10 @@ "plasmid_name": "pLEX_305-C-dTAG", "sequence-type": "addgene-full", "addgene_id": "91798", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0021-8", + "https://www.ncbi.nlm.nih.gov/pubmed/29581585" + ], "kit": null, "att_sites": [ "attR1", @@ -447207,7 +474344,10 @@ "plasmid_name": "pTA7001-DEST", "sequence-type": "addgene-full", "addgene_id": "71745", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.110.171785", + "https://www.ncbi.nlm.nih.gov/pubmed/21343429" + ], "kit": null, "att_sites": [ "attR1", @@ -447248,7 +474388,10 @@ "plasmid_name": "TFORF3078", "sequence-type": "addgene-full", "addgene_id": "144554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -447308,7 +474451,10 @@ "plasmid_name": "pMMACE DEST CMV PE2", "sequence-type": "addgene-full", "addgene_id": "206276", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attR1", @@ -447348,7 +474494,10 @@ "plasmid_name": "pDONR223_PPP2R1A_WT", "sequence-type": "addgene-full", "addgene_id": "81760", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -447381,7 +474530,10 @@ "plasmid_name": "pDONR221-SLC45A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161345", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161345.addgene-full.gb" }, @@ -447390,7 +474542,9 @@ "plasmid_name": "p3E-IRES-mTagBFP2-pA (JDW 1361)", "sequence-type": "addgene-full", "addgene_id": "224535", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -447430,7 +474584,10 @@ "plasmid_name": "pEZY202", "sequence-type": "depositor-full", "addgene_id": "18705", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18705.depositor-full.gb" }, @@ -447439,7 +474596,10 @@ "plasmid_name": "pXN22-Dest", "sequence-type": "addgene-full", "addgene_id": "105085", - "references": [], + "references": [ + "https://doi.org/10.1002/0471142301.ns0527s41", + "https://www.ncbi.nlm.nih.gov/pubmed/18428659" + ], "kit": null, "att_sites": [ "attR1", @@ -447489,7 +474649,10 @@ "plasmid_name": "plenti-UbcP-IKZF3-3xHA-pGK-Pur", "sequence-type": "addgene-full", "addgene_id": "69053", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -447549,7 +474712,10 @@ "plasmid_name": "pDONR223_CYP3A5_p.D336N", "sequence-type": "addgene-full", "addgene_id": "81480", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -447581,7 +474747,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 S_nostop", "sequence-type": "addgene-full", "addgene_id": "168532", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -447611,7 +474780,6 @@ "plasmid_name": "p663-UBC-V5-TurboID-V5-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158159", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -447677,7 +474845,10 @@ "plasmid_name": "pHAGE-EGFR-A839V", "sequence-type": "addgene-full", "addgene_id": "116234", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -447731,7 +474902,10 @@ "plasmid_name": "TFORF3424", "sequence-type": "addgene-full", "addgene_id": "144900", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -447791,7 +474965,10 @@ "plasmid_name": "pAC149-pCR8-dCas9VP160", "sequence-type": "depositor-full", "addgene_id": "48221", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attL1", @@ -447824,7 +475001,10 @@ "plasmid_name": "IA304: pMAGIC (R4-R3) NLS-Sa dCas9-NLS-VPR", "sequence-type": "addgene-full", "addgene_id": "121822", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -447861,7 +475041,10 @@ "plasmid_name": "pEPYCdKN0002", "sequence-type": "addgene-full", "addgene_id": "196149", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attB1", @@ -447901,7 +475084,10 @@ "plasmid_name": "IY202: pMVP (L3-L2) APEX2 + polyA", "sequence-type": "addgene-full", "addgene_id": "121796", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -447935,7 +475121,6 @@ "plasmid_name": "R777-E013 Hs.ARHGEF2", "sequence-type": "depositor-full", "addgene_id": "70297", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -447963,7 +475148,9 @@ "plasmid_name": "pPB-cT3G-cERP2-PRDM9", "sequence-type": "addgene-full", "addgene_id": "222565", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -448009,7 +475196,10 @@ "plasmid_name": "pYPQ284-v2", "sequence-type": "addgene-full", "addgene_id": "138119", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -448041,7 +475231,10 @@ "plasmid_name": "pLenti-GRET", "sequence-type": "addgene-full", "addgene_id": "158222", - "references": [], + "references": [ + "https://doi.org/10.1002/advs.202001467", + "https://www.ncbi.nlm.nih.gov/pubmed/33042758" + ], "kit": null, "att_sites": [ "attB1", @@ -448108,7 +475301,10 @@ "plasmid_name": "pME-nls-sfGFP", "sequence-type": "addgene-full", "addgene_id": "132973", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "att_sites": [ "attL1", @@ -448143,7 +475339,6 @@ "plasmid_name": "PSMC3_miniTurbo_Nterm", "sequence-type": "addgene-full", "addgene_id": "221525", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -448187,7 +475382,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep63", "sequence-type": "addgene-full", "addgene_id": "136861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -448231,7 +475429,10 @@ "plasmid_name": "pBBR5pemIKpKan", "sequence-type": "addgene-full", "addgene_id": "129271", - "references": [], + "references": [ + "https://doi.org/10.1128/MRA.00769-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31488530" + ], "kit": null, "att_sites": [ "attR1", @@ -448273,7 +475474,6 @@ "plasmid_name": "pENTRY4_ WRKY28_1", "sequence-type": "addgene-full", "addgene_id": "126899", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -448308,7 +475508,10 @@ "plasmid_name": "pDONR223-ZNF624", "sequence-type": "addgene-full", "addgene_id": "88065", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -448337,7 +475540,10 @@ "plasmid_name": "pcDNA3_AVPR2-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194370", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -448394,7 +475600,10 @@ "plasmid_name": "pHAGE-ERBB2-R226S", "sequence-type": "addgene-full", "addgene_id": "116346", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -448448,7 +475657,10 @@ "plasmid_name": "pDONR221_SLC13A4", "sequence-type": "addgene-full", "addgene_id": "131933", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -448479,7 +475691,10 @@ "plasmid_name": "TFORF2950", "sequence-type": "addgene-full", "addgene_id": "144426", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -448541,7 +475756,10 @@ "plasmid_name": "actc1b-mKate2-ING2", "sequence-type": "addgene-full", "addgene_id": "109502", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -448583,7 +475801,10 @@ "plasmid_name": "pBSWHhc-p53", "sequence-type": "addgene-full", "addgene_id": "133903", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attB1", @@ -448619,7 +475840,10 @@ "plasmid_name": "pDONR221-SLC38A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161237", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -448650,7 +475874,10 @@ "plasmid_name": "pDONR223_CTCF_p.N568K", "sequence-type": "addgene-full", "addgene_id": "81612", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -448682,7 +475909,10 @@ "plasmid_name": "pGAPDH::sNluc1", "sequence-type": "addgene-full", "addgene_id": "187221", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2022.100298", + "https://www.ncbi.nlm.nih.gov/pubmed/36313809" + ], "kit": null, "att_sites": [ "attB1", @@ -448715,7 +475945,10 @@ "plasmid_name": "pLAMP1-mCherry", "sequence-type": "addgene-full", "addgene_id": "45147", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1437", + "https://www.ncbi.nlm.nih.gov/pubmed/20228815" + ], "kit": null, "att_sites": [ "attB1", @@ -448769,7 +476002,10 @@ "plasmid_name": "TFORF3545", "sequence-type": "depositor-full", "addgene_id": "145021", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -448829,7 +476065,10 @@ "plasmid_name": "pDCC6", "sequence-type": "addgene-full", "addgene_id": "59985", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.114.014126", + "https://www.ncbi.nlm.nih.gov/pubmed/25236734" + ], "kit": null, "att_sites": [ "attB2" @@ -448858,7 +476097,10 @@ "plasmid_name": "pDONR223_PTEN_p.G129E", "sequence-type": "addgene-full", "addgene_id": "81689", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -448890,7 +476132,10 @@ "plasmid_name": "actc1b-mKate2-rab13", "sequence-type": "addgene-full", "addgene_id": "109599", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -448932,7 +476177,10 @@ "plasmid_name": "pAG415GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14314", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -448993,7 +476241,10 @@ "plasmid_name": "pCM1.95", "sequence-type": "depositor-full", "addgene_id": "21381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -449024,7 +476275,10 @@ "plasmid_name": "p3E-rab22a", "sequence-type": "addgene-full", "addgene_id": "109679", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -449055,7 +476309,10 @@ "plasmid_name": "pSLIK 3xFLAG-CSE1L zeo", "sequence-type": "addgene-full", "addgene_id": "192320", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -449120,7 +476377,10 @@ "plasmid_name": "pDONR223_ARSI_p.P228L", "sequence-type": "addgene-full", "addgene_id": "81569", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -449152,7 +476412,10 @@ "plasmid_name": "pHWBF06exp", "sequence-type": "addgene-full", "addgene_id": "130831", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attB1", @@ -449187,7 +476450,10 @@ "plasmid_name": "pDONR221-EWSR1 Stop", "sequence-type": "depositor-full", "addgene_id": "84887", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/dds116", + "https://www.ncbi.nlm.nih.gov/pubmed/22454397" + ], "kit": null, "att_sites": [ "attL1", @@ -449218,7 +476484,10 @@ "plasmid_name": "pDONR223_ZNF597_WT", "sequence-type": "addgene-full", "addgene_id": "82894", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -449247,7 +476516,10 @@ "plasmid_name": "pCM5.56", "sequence-type": "depositor-full", "addgene_id": "19379", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -449278,7 +476550,10 @@ "plasmid_name": "TFORF3093", "sequence-type": "addgene-full", "addgene_id": "144569", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -449338,7 +476613,10 @@ "plasmid_name": "pLenti6-AMPK alpha1 (1-312)", "sequence-type": "addgene-full", "addgene_id": "162131", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3328", + "https://www.ncbi.nlm.nih.gov/pubmed/26999735" + ], "kit": null, "att_sites": [ "attB1", @@ -449395,7 +476673,9 @@ "plasmid_name": "pME-TAEL (JDW 1324)", "sequence-type": "addgene-full", "addgene_id": "224508", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -449432,7 +476712,10 @@ "plasmid_name": "pDONR221-SLC16A13_STOP", "sequence-type": "depositor-full", "addgene_id": "161041", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -449463,7 +476746,10 @@ "plasmid_name": "pFRT_TO_FlagHA_PRKRA", "sequence-type": "addgene-full", "addgene_id": "106111", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106111.addgene-full.gb" }, @@ -449472,7 +476758,10 @@ "plasmid_name": "IO001: pMVP (R4-R3) eGFP", "sequence-type": "addgene-full", "addgene_id": "121730", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -449507,7 +476796,10 @@ "plasmid_name": "pDONR221-SLC12A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161098", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -449538,7 +476830,10 @@ "plasmid_name": "pDONR223_RIT1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82940", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -449567,7 +476862,6 @@ "plasmid_name": "R777-E330 Hs.SPRY2-nostop", "sequence-type": "depositor-full", "addgene_id": "70614", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -449595,7 +476889,10 @@ "plasmid_name": "pHAGE-BRAF-V600R", "sequence-type": "addgene-full", "addgene_id": "116209", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -449651,7 +476948,6 @@ "plasmid_name": "p663-UBC-TurboID-V5-GSK3B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158164", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -449718,7 +477014,10 @@ "plasmid_name": "pMXs-hFOXH1", "sequence-type": "depositor-full", "addgene_id": "59183", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms4678", + "https://www.ncbi.nlm.nih.gov/pubmed/24759836" + ], "kit": null, "att_sites": [ "attB1", @@ -449746,7 +477045,10 @@ "plasmid_name": "TFORF3213", "sequence-type": "addgene-full", "addgene_id": "144689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -449806,7 +477108,10 @@ "plasmid_name": "pENTR1A_mmFbxw7a (closed)", "sequence-type": "addgene-full", "addgene_id": "160101", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attL1", @@ -449830,7 +477135,9 @@ "plasmid_name": "pDEST17-His10-Smt3-DDX5\u0394IDR(kf)-SNAP", "sequence-type": "addgene-full", "addgene_id": "166151", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attB1", @@ -449868,7 +477175,10 @@ "plasmid_name": "pHAGE-EGFR-R108K", "sequence-type": "addgene-full", "addgene_id": "116292", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -449922,7 +477232,10 @@ "plasmid_name": "pENTR-AtTAS1c-B/c", "sequence-type": "depositor-full", "addgene_id": "51774", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.113.234989", + "https://www.ncbi.nlm.nih.gov/pubmed/24647477" + ], "kit": null, "att_sites": [ "attL1", @@ -449958,7 +477271,6 @@ "plasmid_name": "R777-E089 Hs.FGFR4", "sequence-type": "depositor-full", "addgene_id": "70373", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -449987,7 +477299,10 @@ "plasmid_name": "pAC1823_pCR8-RBFOX1N-dCasRx-C", "sequence-type": "addgene-full", "addgene_id": "118657", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -450019,7 +477334,10 @@ "plasmid_name": "TFORF3136", "sequence-type": "addgene-full", "addgene_id": "144612", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -450079,7 +477397,10 @@ "plasmid_name": "p3E-rab4a-CA", "sequence-type": "addgene-full", "addgene_id": "109736", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -450110,7 +477431,10 @@ "plasmid_name": "pSGE_763_4xUAS_UPS_hkCP", "sequence-type": "depositor-full", "addgene_id": "71171", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -450142,7 +477466,10 @@ "plasmid_name": "pDONR223_CNBD1_p.A426S", "sequence-type": "addgene-full", "addgene_id": "81426", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -450174,7 +477501,10 @@ "plasmid_name": "pcDNA3.2 YFP", "sequence-type": "addgene-full", "addgene_id": "84910", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09320", + "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + ], "kit": null, "att_sites": [ "attB1", @@ -450228,7 +477558,10 @@ "plasmid_name": "p{3P3-dsRed::FRT-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182177", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -450271,7 +477604,10 @@ "plasmid_name": "pDONR223_C13orf37_WT", "sequence-type": "addgene-full", "addgene_id": "81872", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -450303,7 +477639,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MARK4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189884", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -450369,7 +477704,10 @@ "plasmid_name": "pYPQ287-RVR", "sequence-type": "addgene-full", "addgene_id": "138124", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -450401,7 +477739,9 @@ "plasmid_name": "pPB-cT3G-cERP2-YTHDC2", "sequence-type": "addgene-full", "addgene_id": "222558", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -450447,7 +477787,10 @@ "plasmid_name": "pHAGE-BRAF-L245F", "sequence-type": "addgene-full", "addgene_id": "116172", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -450502,7 +477845,10 @@ "plasmid_name": "pHAGE-MAP2K4", "sequence-type": "addgene-full", "addgene_id": "116758", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -450553,7 +477899,10 @@ "plasmid_name": "pENTR-R4R3-2xmEGFP-N", "sequence-type": "depositor-full", "addgene_id": "113747", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -450588,7 +477937,10 @@ "plasmid_name": "pYPQ265H", "sequence-type": "addgene-full", "addgene_id": "149554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2020.100101", + "https://www.ncbi.nlm.nih.gov/pubmed/33898973" + ], "kit": null, "att_sites": [ "attL1", @@ -450622,7 +477974,10 @@ "plasmid_name": "pLentiPGK Blast DEST JNKKTRmRuby2", "sequence-type": "addgene-full", "addgene_id": "59154", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attB1", @@ -450682,7 +478037,6 @@ "plasmid_name": "IDG_TMC3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161629", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -450741,7 +478095,6 @@ "plasmid_name": "p663-UBC-V5-dsRed_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135262", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -450810,7 +478163,10 @@ "plasmid_name": "pDEST40-2XFL-Src-Y530EEI", "sequence-type": "addgene-full", "addgene_id": "140323", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -450862,7 +478218,10 @@ "plasmid_name": "pBP-split-intein-Gal4[21-881]-C-int", "sequence-type": "addgene-full", "addgene_id": "199202", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2304730120", + "https://www.ncbi.nlm.nih.gov/pubmed/37276389" + ], "kit": null, "file": "data/addgene_plasmids/199202.addgene-full.gb" }, @@ -450871,7 +478230,10 @@ "plasmid_name": "pCAG/ATP10A(E203Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209246", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "att_sites": [ "attB1", @@ -450916,7 +478278,10 @@ "plasmid_name": "pDEST_CMV_N_Flag_BIRC6", "sequence-type": "addgene-full", "addgene_id": "197973", - "references": [], + "references": [ + "https://doi.org/10.1126/science.ade5750", + "https://www.ncbi.nlm.nih.gov/pubmed/36758104" + ], "kit": null, "att_sites": [ "attB1", @@ -450961,7 +478326,10 @@ "plasmid_name": "pSC50", "sequence-type": "addgene-full", "addgene_id": "104824", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "att_sites": [ "attB1", @@ -451005,7 +478373,10 @@ "plasmid_name": "pHAGE-KRAS-G12D", "sequence-type": "addgene-full", "addgene_id": "116423", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116423.addgene-full.gb" }, @@ -451014,7 +478385,10 @@ "plasmid_name": "pYPQ-NF1-L1-dSpRY", "sequence-type": "addgene-full", "addgene_id": "177681", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.202100571", + "https://www.ncbi.nlm.nih.gov/pubmed/35377968" + ], "kit": null, "att_sites": [ "attL1", @@ -451048,7 +478422,10 @@ "plasmid_name": "pDONR221-SLC9A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161388", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -451079,7 +478456,6 @@ "plasmid_name": "pAG426GAL-HCoV-OC43_3CL", "sequence-type": "addgene-full", "addgene_id": "203503", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -451133,7 +478509,10 @@ "plasmid_name": "pRU53", "sequence-type": "addgene-full", "addgene_id": "167679", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -451182,7 +478561,10 @@ "plasmid_name": "pDONR223_IER3_p.A155T", "sequence-type": "addgene-full", "addgene_id": "81297", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -451214,7 +478596,9 @@ "plasmid_name": "pMpGWB218", "sequence-type": "depositor-full", "addgene_id": "68609", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -451261,7 +478645,6 @@ "plasmid_name": "pENTR_Hu_HEC1(WT)", "sequence-type": "addgene-full", "addgene_id": "136350", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -451292,7 +478675,10 @@ "plasmid_name": "MAC_N_RAB11A", "sequence-type": "addgene-full", "addgene_id": "111691", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -451337,7 +478723,10 @@ "plasmid_name": "pDL69", "sequence-type": "addgene-full", "addgene_id": "175905", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -451361,7 +478750,10 @@ "plasmid_name": "pHL-EF1a-SphcCas9-iP-A", "sequence-type": "depositor-full", "addgene_id": "60599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.013", + "https://www.ncbi.nlm.nih.gov/pubmed/25434822" + ], "kit": null, "att_sites": [ "attB1", @@ -451398,7 +478790,10 @@ "plasmid_name": "Tol2-lyzC-Gal4-Vp16-Crys-CFP", "sequence-type": "addgene-full", "addgene_id": "97144", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "att_sites": [ "attB1", @@ -451442,7 +478837,10 @@ "plasmid_name": "pYPQ262F-ABE8e", "sequence-type": "addgene-full", "addgene_id": "199179", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad347", + "https://www.ncbi.nlm.nih.gov/pubmed/37315207" + ], "kit": null, "file": "data/addgene_plasmids/199179.addgene-full.gb" }, @@ -451451,7 +478849,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RSKR_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170607", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -451517,7 +478914,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_R38A_E39A", "sequence-type": "depositor-full", "addgene_id": "65664", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -451562,7 +478962,9 @@ "plasmid_name": "p5E-CMVmin", "sequence-type": "depositor-full", "addgene_id": "80802", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL4", @@ -451596,7 +478998,10 @@ "plasmid_name": "pGFP-Rab8A[Q67L]", "sequence-type": "addgene-full", "addgene_id": "24900", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.053", + "https://www.ncbi.nlm.nih.gov/pubmed/17574030" + ], "kit": null, "att_sites": [ "attB1", @@ -451648,7 +479053,10 @@ "plasmid_name": "TFORF3521", "sequence-type": "depositor-full", "addgene_id": "144997", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -451708,7 +479116,10 @@ "plasmid_name": "MAC_C_IGF1R", "sequence-type": "addgene-full", "addgene_id": "187770", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -451753,7 +479164,10 @@ "plasmid_name": "pDONR223_OR2T33_p.R120S", "sequence-type": "addgene-full", "addgene_id": "81343", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -451785,7 +479199,9 @@ "plasmid_name": "pPtGG-1", "sequence-type": "depositor-full", "addgene_id": "89990", - "references": [], + "references": [ + "https://doi.org/10.7287/peerj.preprints.2907v1" + ], "kit": null, "att_sites": [ "attL1", @@ -451814,7 +479230,10 @@ "plasmid_name": "pDONR221_EGFP", "sequence-type": "addgene-full", "addgene_id": "25899", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "att_sites": [ "attL1", @@ -451849,7 +479268,10 @@ "plasmid_name": "pYPQ233 (dLbCpf1-SRDX)", "sequence-type": "addgene-full", "addgene_id": "86211", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "att_sites": [ "attL1", @@ -451881,7 +479303,10 @@ "plasmid_name": "pMXs-OLIG2", "sequence-type": "addgene-full", "addgene_id": "32933", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2011.07.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21852222" + ], "kit": null, "att_sites": [ "attB1", @@ -451909,7 +479334,10 @@ "plasmid_name": "pDONR-P2rP4", "sequence-type": "addgene-full", "addgene_id": "141015", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attP2", @@ -451937,7 +479365,10 @@ "plasmid_name": "pHAGE-PTEN-C136F", "sequence-type": "addgene-full", "addgene_id": "116617", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -451991,7 +479422,10 @@ "plasmid_name": "pENTR221-EF1.Pro", "sequence-type": "addgene-full", "addgene_id": "79488", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL1", @@ -452023,7 +479457,10 @@ "plasmid_name": "pcDNA5FRT/TO-Npl4-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113495", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -452067,7 +479504,10 @@ "plasmid_name": "pDONR223-MAP2K1", "sequence-type": "addgene-full", "addgene_id": "23406", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -452099,7 +479539,10 @@ "plasmid_name": "pHAGE-eGFP-OPTN E50K", "sequence-type": "addgene-full", "addgene_id": "175765", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -452152,7 +479595,6 @@ "plasmid_name": "pCM1.112", "sequence-type": "depositor-full", "addgene_id": "19599", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -452183,7 +479625,6 @@ "plasmid_name": "pcDNA3.1-Renilla-ccdB", "sequence-type": "addgene-full", "addgene_id": "87068", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -452236,7 +479677,10 @@ "plasmid_name": "pT2-cryR;clecl14aP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90159", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -452286,7 +479730,9 @@ "plasmid_name": "pFLIP30", "sequence-type": "depositor-full", "addgene_id": "65499", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -452326,7 +479772,6 @@ "plasmid_name": "pProk2.Cre.T2A.mCherry", "sequence-type": "addgene-full", "addgene_id": "169013", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -452368,7 +479813,10 @@ "plasmid_name": "pDONR221_SLC27A5", "sequence-type": "addgene-full", "addgene_id": "132104", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -452399,7 +479847,10 @@ "plasmid_name": "pYPQ166", "sequence-type": "addgene-full", "addgene_id": "109328", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12982", + "https://www.ncbi.nlm.nih.gov/pubmed/29972722" + ], "kit": null, "file": "data/addgene_plasmids/109328.addgene-full.gb" }, @@ -452408,7 +479859,10 @@ "plasmid_name": "pTripz NEO DEST", "sequence-type": "addgene-full", "addgene_id": "209072", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-18-0389", + "https://www.ncbi.nlm.nih.gov/pubmed/30373918" + ], "kit": null, "att_sites": [ "attR1", @@ -452465,7 +479919,10 @@ "plasmid_name": "pINDgw RFA-V5-EcoDam", "sequence-type": "depositor-full", "addgene_id": "59204", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "att_sites": [ "attR1", @@ -452517,7 +479974,10 @@ "plasmid_name": "pDONR223_SENP6_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83008", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -452546,7 +480006,9 @@ "plasmid_name": "pMpGWB319", "sequence-type": "depositor-full", "addgene_id": "68647", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -452592,7 +480054,10 @@ "plasmid_name": "pcDNA-DEST47 PINK1 C-GFP", "sequence-type": "addgene-full", "addgene_id": "13316", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0500617102", + "https://www.ncbi.nlm.nih.gov/pubmed/15824318" + ], "kit": null, "att_sites": [ "attB1", @@ -452645,7 +480110,6 @@ "plasmid_name": "pAG416-GAL-TDP-43-N267S", "sequence-type": "addgene-full", "addgene_id": "181720", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -452698,7 +480162,10 @@ "plasmid_name": "pAG414GPD-LjCYP722C(pYL795)", "sequence-type": "addgene-full", "addgene_id": "178292", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -452751,7 +480218,6 @@ "plasmid_name": "R777-E309 Hs.SHC2", "sequence-type": "depositor-full", "addgene_id": "70593", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -452779,7 +480245,10 @@ "plasmid_name": "pMDJ10 - pEXP[Peft-3 | tagBFP2 (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159798", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -452815,7 +480284,10 @@ "plasmid_name": "pAG416GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14220", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -452876,7 +480348,10 @@ "plasmid_name": "pDONR223_BAX_WT", "sequence-type": "addgene-full", "addgene_id": "82191", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -452905,7 +480380,10 @@ "plasmid_name": "pHAGE FL NAP1 STOP C' EGFP IRES Blast", "sequence-type": "addgene-full", "addgene_id": "179102", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.202303082", + "https://www.ncbi.nlm.nih.gov/pubmed/38059900" + ], "kit": null, "att_sites": [ "attB1", @@ -452959,7 +480437,10 @@ "plasmid_name": "pHAGE-NFE2L2", "sequence-type": "addgene-full", "addgene_id": "116765", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -453009,7 +480490,10 @@ "plasmid_name": "pAG425GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14177", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -453072,7 +480556,10 @@ "plasmid_name": "pCW57.1 Ex9 mut WT1", "sequence-type": "addgene-full", "addgene_id": "217646", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "att_sites": [ "attB1", @@ -453134,7 +480621,10 @@ "plasmid_name": "pCR8/GW_TOPO_Cdk12_Nterm_FlagHa", "sequence-type": "addgene-full", "addgene_id": "127177", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0758-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30487607" + ], "kit": null, "att_sites": [ "attL1", @@ -453166,7 +480656,9 @@ "plasmid_name": "bactin:GFP-LAP2b", "sequence-type": "addgene-full", "addgene_id": "105980", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30120238" + ], "kit": null, "att_sites": [ "attB1", @@ -453217,7 +480709,10 @@ "plasmid_name": "pGWB601NL3F10H", "sequence-type": "addgene-full", "addgene_id": "141287", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0454-4", + "https://www.ncbi.nlm.nih.gov/pubmed/31316580" + ], "kit": null, "att_sites": [ "attR1", @@ -453265,7 +480760,10 @@ "plasmid_name": "pHAGE-PIK3CA-E545K", "sequence-type": "addgene-full", "addgene_id": "116485", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -453315,7 +480813,10 @@ "plasmid_name": "pDEST17-DXO", "sequence-type": "addgene-full", "addgene_id": "177993", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "att_sites": [ "attB1", @@ -453349,7 +480850,10 @@ "plasmid_name": "pSC45", "sequence-type": "addgene-full", "addgene_id": "104819", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104819.addgene-full.gb" }, @@ -453358,7 +480862,10 @@ "plasmid_name": "pLentiPGK Puro DEST PKAKTRClover", "sequence-type": "depositor-full", "addgene_id": "59153", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "att_sites": [ "attB1", @@ -453419,7 +480926,10 @@ "plasmid_name": "pAG415GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14410", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -453480,7 +480990,10 @@ "plasmid_name": "pLenti-Zyxin-G (aa1-372)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187699", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187699.addgene-full.gb" }, @@ -453489,7 +481002,6 @@ "plasmid_name": "R777-E155 Hs.PDGFRA", "sequence-type": "depositor-full", "addgene_id": "70439", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -453517,7 +481029,10 @@ "plasmid_name": "pcDNA5-FRT/TO-N-mEGFP-PARP15", "sequence-type": "addgene-full", "addgene_id": "178000", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "att_sites": [ "attB1", @@ -453564,7 +481079,10 @@ "plasmid_name": "pDONR221-Phelo", "sequence-type": "depositor-full", "addgene_id": "48995", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2180-9-90", + "https://www.ncbi.nlm.nih.gov/pubmed/19432966" + ], "kit": null, "att_sites": [ "attL1", @@ -453596,7 +481114,10 @@ "plasmid_name": "C122-E10: mCherry", "sequence-type": "addgene-full", "addgene_id": "162892", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -453631,7 +481152,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term PSPC1", "sequence-type": "addgene-full", "addgene_id": "187579", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -453676,7 +481200,10 @@ "plasmid_name": "PB-CA", "sequence-type": "depositor-full", "addgene_id": "20960", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "att_sites": [ "attR1", @@ -453728,7 +481255,10 @@ "plasmid_name": "pDEST-CMV GFP-GABARAPL1 WT", "sequence-type": "addgene-full", "addgene_id": "123117", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -453781,7 +481311,10 @@ "plasmid_name": "pDONR221_SLC34A3", "sequence-type": "addgene-full", "addgene_id": "132076", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -453812,7 +481345,10 @@ "plasmid_name": "GRB2-V5", "sequence-type": "addgene-full", "addgene_id": "139631", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -453863,7 +481399,10 @@ "plasmid_name": "pZA15", "sequence-type": "addgene-full", "addgene_id": "158493", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -453893,7 +481432,10 @@ "plasmid_name": "pLSLGUS", "sequence-type": "depositor-full", "addgene_id": "51517", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attB1", @@ -453943,7 +481485,10 @@ "plasmid_name": "pENTR-2B-Nkx2-5YRD Y-A", "sequence-type": "addgene-full", "addgene_id": "98611", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -453967,7 +481512,10 @@ "plasmid_name": "PDE9A_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176945", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -454019,7 +481567,10 @@ "plasmid_name": "pDONR221_SLC6A1", "sequence-type": "addgene-full", "addgene_id": "132242", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -454049,7 +481600,10 @@ "plasmid_name": "pVenusNfN", "sequence-type": "addgene-full", "addgene_id": "128564", - "references": [], + "references": [ + "https://doi.org/10.1177/1087057116659438", + "https://www.ncbi.nlm.nih.gov/pubmed/27455993" + ], "kit": null, "att_sites": [ "attR1", @@ -454103,7 +481657,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-7", "sequence-type": "depositor-full", "addgene_id": "46694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -454154,7 +481711,10 @@ "plasmid_name": "pDONR221-ZNF749", "sequence-type": "addgene-full", "addgene_id": "101460", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -454183,7 +481743,10 @@ "plasmid_name": "pJRA99", "sequence-type": "addgene-full", "addgene_id": "209334", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -454223,7 +481786,10 @@ "plasmid_name": "pENTR-R4R3-3xmEGFP-N", "sequence-type": "addgene-full", "addgene_id": "113748", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -454258,7 +481824,10 @@ "plasmid_name": "pInducer20_SLC38A2_wt", "sequence-type": "addgene-full", "addgene_id": "156182", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0959", + "https://www.ncbi.nlm.nih.gov/pubmed/32341021" + ], "kit": null, "att_sites": [ "attB1", @@ -454310,7 +481879,10 @@ "plasmid_name": "pUC-DEST-cjBLIMP1-Venus-HygTK", "sequence-type": "addgene-full", "addgene_id": "141028", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attB1", @@ -454359,7 +481931,6 @@ "plasmid_name": "TCF4 - P381L in pENTR", "sequence-type": "addgene-full", "addgene_id": "216570", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -454389,7 +481960,10 @@ "plasmid_name": "pAG306GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14139", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -454446,7 +482020,10 @@ "plasmid_name": "pDEST-Myc-FBW7 WD40 (All deleted)", "sequence-type": "addgene-full", "addgene_id": "197455", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "att_sites": [ "attB1", @@ -454498,7 +482075,10 @@ "plasmid_name": "pENTR223-BBLF2/3", "sequence-type": "addgene-full", "addgene_id": "195831", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -454527,7 +482107,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-LGALS8", "sequence-type": "addgene-full", "addgene_id": "175758", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -454578,7 +482161,10 @@ "plasmid_name": "pENTR223-BDLF4", "sequence-type": "addgene-full", "addgene_id": "195785", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -454607,7 +482193,10 @@ "plasmid_name": "C512-E29: attB5r-mKate2-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162946", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -454635,7 +482224,10 @@ "plasmid_name": "pDONR221-SLC45A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161420", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -454666,7 +482258,10 @@ "plasmid_name": "Flag-HA-BAP1", "sequence-type": "addgene-full", "addgene_id": "22539", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -454712,7 +482307,10 @@ "plasmid_name": "pT2-cryR;nrp1bP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90164", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90164.addgene-full.gb" }, @@ -454721,7 +482319,10 @@ "plasmid_name": "pDestTol2pA ins:TDimer mVenus", "sequence-type": "addgene-full", "addgene_id": "210520", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adi8317", + "https://www.ncbi.nlm.nih.gov/pubmed/37792934" + ], "kit": null, "att_sites": [ "attB1", @@ -454761,7 +482362,10 @@ "plasmid_name": "pDONR221_SLC29A2", "sequence-type": "addgene-full", "addgene_id": "132139", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -454792,7 +482396,10 @@ "plasmid_name": "pMuLE_ENTR_TOP-NLuc1.1_L5-L4", "sequence-type": "addgene-full", "addgene_id": "113867", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "file": "data/addgene_plasmids/113867.addgene-full.gb" }, @@ -454801,7 +482408,10 @@ "plasmid_name": "pGC49", "sequence-type": "depositor-full", "addgene_id": "19680", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -454837,7 +482447,10 @@ "plasmid_name": "pHAGE-PIK3CB-D1067Y", "sequence-type": "addgene-full", "addgene_id": "116551", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -454892,7 +482505,6 @@ "plasmid_name": "R777-E193 Hs.PRKAA2", "sequence-type": "depositor-full", "addgene_id": "70477", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -454920,7 +482532,6 @@ "plasmid_name": "pAG416GAL10-POWV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203471", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -454969,7 +482580,10 @@ "plasmid_name": "pMDJ112 - pEXP(HygroR, 5605)[Phsp-16.41 | eFlp recombinase (PATCs) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159811", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -455002,7 +482616,10 @@ "plasmid_name": "pHAGE-TGFB1-G202E", "sequence-type": "addgene-full", "addgene_id": "116695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -455052,7 +482669,10 @@ "plasmid_name": "pDONR221-SLC44A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161404", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -455083,7 +482703,10 @@ "plasmid_name": "pT2-cryR;clec14aCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90140", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -455131,7 +482754,10 @@ "plasmid_name": "pDONR223_BIRC2_WT", "sequence-type": "addgene-full", "addgene_id": "82188", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82188.addgene-full.gb" }, @@ -455140,7 +482766,10 @@ "plasmid_name": "pDONR221-SLC25A18_STOP", "sequence-type": "depositor-full", "addgene_id": "161169", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -455171,7 +482800,10 @@ "plasmid_name": "tetO-ETS2", "sequence-type": "addgene-full", "addgene_id": "170685", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -455233,7 +482865,10 @@ "plasmid_name": "pHAGE-PIK3CG-A569T", "sequence-type": "addgene-full", "addgene_id": "116575", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -455288,7 +482923,10 @@ "plasmid_name": "pDONR223_NUP88_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83011", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -455318,7 +482956,10 @@ "plasmid_name": "pDONR223-PRKCB2", "sequence-type": "addgene-full", "addgene_id": "23764", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -455350,7 +482991,10 @@ "plasmid_name": "pDONR221_SLC19A1", "sequence-type": "addgene-full", "addgene_id": "132266", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -455381,7 +483025,10 @@ "plasmid_name": "pYPQ220 (AsCpf1)", "sequence-type": "addgene-full", "addgene_id": "86208", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "att_sites": [ "attL1", @@ -455414,7 +483061,9 @@ "plasmid_name": "pMpGWB224", "sequence-type": "depositor-full", "addgene_id": "68615", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -455463,7 +483112,10 @@ "plasmid_name": "pMuLE ENTR SV40 L3-L2", "sequence-type": "depositor-full", "addgene_id": "62096", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -455497,7 +483149,10 @@ "plasmid_name": "MAC_C_FLT4", "sequence-type": "addgene-full", "addgene_id": "187769", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -455542,7 +483197,10 @@ "plasmid_name": "pDONR223_ERBB2_WT", "sequence-type": "addgene-full", "addgene_id": "82113", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -455571,7 +483229,10 @@ "plasmid_name": "pAG424GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14272", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -455631,7 +483292,10 @@ "plasmid_name": "MAC_N_STA5B", "sequence-type": "addgene-full", "addgene_id": "167800", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -455676,7 +483340,10 @@ "plasmid_name": "pENTR5'_ubi:loxP-EGFP-loxP", "sequence-type": "depositor-full", "addgene_id": "27322", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.059345", + "https://www.ncbi.nlm.nih.gov/pubmed/21138979" + ], "kit": null, "att_sites": [ "attL4", @@ -455717,7 +483384,10 @@ "plasmid_name": "CBR3_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176961", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -455769,7 +483439,10 @@ "plasmid_name": "pENTR223-EBNA2", "sequence-type": "addgene-full", "addgene_id": "195815", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -455799,7 +483472,10 @@ "plasmid_name": "pLenti6.2-ccdB-3xFLAG-V5", "sequence-type": "addgene-full", "addgene_id": "87071", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.05.039", + "https://www.ncbi.nlm.nih.gov/pubmed/25036637" + ], "kit": null, "att_sites": [ "attR1", @@ -455861,7 +483537,10 @@ "plasmid_name": "pDONR221-SLC50A1_STOP", "sequence-type": "depositor-full", "addgene_id": "161394", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -455892,7 +483571,10 @@ "plasmid_name": "C514-E44: attB5r-SNAP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162962", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -455920,7 +483602,6 @@ "plasmid_name": "pLIX403-ccdB-NatMx", "sequence-type": "addgene-full", "addgene_id": "158563", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -455978,7 +483659,10 @@ "plasmid_name": "pDONR221_SLC8A3", "sequence-type": "addgene-full", "addgene_id": "132186", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -456009,7 +483693,10 @@ "plasmid_name": "pENTR221-IL6.Pro", "sequence-type": "addgene-full", "addgene_id": "79491", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL1", @@ -456040,7 +483727,10 @@ "plasmid_name": "ACA8-mYFP", "sequence-type": "addgene-full", "addgene_id": "87245", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.111.192575", + "https://www.ncbi.nlm.nih.gov/pubmed/22535420" + ], "kit": null, "att_sites": [ "attB1", @@ -456075,7 +483765,6 @@ "plasmid_name": "pDEST26-Nluc-hTRAF3", "sequence-type": "addgene-full", "addgene_id": "197645", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -456123,7 +483812,6 @@ "plasmid_name": "pDONR221-sh3bgr", "sequence-type": "addgene-full", "addgene_id": "192727", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -456154,7 +483842,10 @@ "plasmid_name": "pEX-CFP-STIM1-deltaK", "sequence-type": "depositor-full", "addgene_id": "18860", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702866104", + "https://www.ncbi.nlm.nih.gov/pubmed/17517596" + ], "kit": null, "att_sites": [ "attB1", @@ -456197,7 +483888,10 @@ "plasmid_name": "PTPRA_deltaD1-SHC", "sequence-type": "addgene-full", "addgene_id": "139615", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -456241,7 +483935,10 @@ "plasmid_name": "pDONR221_SLC25A30", "sequence-type": "addgene-full", "addgene_id": "132052", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -456272,7 +483969,6 @@ "plasmid_name": "pENTR_Hu_PRC1(WT)", "sequence-type": "addgene-full", "addgene_id": "136349", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -456303,7 +483999,10 @@ "plasmid_name": "MAC_N_LMNA", "sequence-type": "addgene-full", "addgene_id": "111688", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -456347,7 +484046,10 @@ "plasmid_name": "pYPQ291-D573A", "sequence-type": "addgene-full", "addgene_id": "129676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129676.addgene-full.gb" }, @@ -456356,7 +484058,10 @@ "plasmid_name": "pENTR-actin-G168D,Y169D", "sequence-type": "addgene-full", "addgene_id": "118384", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attL1", @@ -456387,7 +484092,10 @@ "plasmid_name": "pHAGE-FGFR2", "sequence-type": "addgene-full", "addgene_id": "116741", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -456442,7 +484150,10 @@ "plasmid_name": "pSC15", "sequence-type": "addgene-full", "addgene_id": "104789", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -456486,7 +484197,10 @@ "plasmid_name": "gRD21A-mRFP", "sequence-type": "addgene-full", "addgene_id": "181959", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.360", + "https://www.ncbi.nlm.nih.gov/pubmed/34877448" + ], "kit": null, "att_sites": [ "attB1", @@ -456529,7 +484243,10 @@ "plasmid_name": "pENTR D-TOPO-C2_11", "sequence-type": "depositor-full", "addgene_id": "60251", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -456560,7 +484277,10 @@ "plasmid_name": "HJP-207-IVS-Syn21-gp41-1C-CreBC-WPREUw", "sequence-type": "addgene-full", "addgene_id": "162479", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "att_sites": [ "attR1", @@ -456596,7 +484316,6 @@ "plasmid_name": "IDG_SLC26A1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161630", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -456655,7 +484374,10 @@ "plasmid_name": "pDONR221_SLC35G4", "sequence-type": "addgene-full", "addgene_id": "132120", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132120.addgene-full.gb" }, @@ -456664,7 +484386,6 @@ "plasmid_name": "Hs.KRAS4b G12A", "sequence-type": "depositor-full", "addgene_id": "83142", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -456691,7 +484412,9 @@ "plasmid_name": "pcDNA5-3xFLAG-TAF5-\u2206ex8_WobbleMut", "sequence-type": "addgene-full", "addgene_id": "209056", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attB1", @@ -456734,7 +484457,10 @@ "plasmid_name": "pLX311 LacZ", "sequence-type": "addgene-full", "addgene_id": "117731", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "att_sites": [ "attB1", @@ -456792,7 +484518,10 @@ "plasmid_name": "pGATE-1", "sequence-type": "addgene-full", "addgene_id": "205743", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2023-0001", + "https://www.ncbi.nlm.nih.gov/pubmed/37424091" + ], "kit": null, "att_sites": [ "attL1", @@ -456821,7 +484550,10 @@ "plasmid_name": "pDONR221-ZNF835", "sequence-type": "depositor-full", "addgene_id": "101472", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -456852,7 +484584,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0385-luc2", "sequence-type": "addgene-full", "addgene_id": "214622", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -456896,7 +484631,10 @@ "plasmid_name": "pDONR223_ATG16L1_WT", "sequence-type": "addgene-full", "addgene_id": "82255", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82255.addgene-full.gb" }, @@ -456905,7 +484643,10 @@ "plasmid_name": "pDONR221-SPNS1_STOP", "sequence-type": "addgene-full", "addgene_id": "161439", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -456936,7 +484677,6 @@ "plasmid_name": "pAG416GAL10-LGTV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203468", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -456985,7 +484725,10 @@ "plasmid_name": "pMDJ20 - pEXP [Psmu-1 | Cre Recombinase (PATCs) | smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159808", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -457018,7 +484761,10 @@ "plasmid_name": "pAC93-pmax-dCas9VP160", "sequence-type": "addgene-full", "addgene_id": "48225", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attB1", @@ -457051,7 +484797,10 @@ "plasmid_name": "pENTR223-PRDX5K83R", "sequence-type": "addgene-full", "addgene_id": "98693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "att_sites": [ "attL1", @@ -457080,7 +484829,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp16", "sequence-type": "depositor-full", "addgene_id": "168962", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168962.depositor-full.gb" }, @@ -457089,7 +484841,10 @@ "plasmid_name": "pHAGE-PIK3CA-V344M", "sequence-type": "addgene-full", "addgene_id": "116548", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -457143,7 +484898,6 @@ "plasmid_name": "BRAF - G518C in pENTR", "sequence-type": "addgene-full", "addgene_id": "216612", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -457173,7 +484927,10 @@ "plasmid_name": "pMuLE ENTR CMV CreERT2 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62172", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -457209,7 +484966,10 @@ "plasmid_name": "pENTR-R4R3-3xmEGFP-C", "sequence-type": "addgene-full", "addgene_id": "113751", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -457244,7 +485004,10 @@ "plasmid_name": "LacZ in pLX304", "sequence-type": "addgene-full", "addgene_id": "42560", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/23245941" + ], "kit": null, "att_sites": [ "attB1", @@ -457303,7 +485066,6 @@ "plasmid_name": "R777-E141 Hs.NFE2L2", "sequence-type": "depositor-full", "addgene_id": "70425", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -457331,7 +485093,10 @@ "plasmid_name": "pAG426GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14396", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -457393,7 +485158,6 @@ "plasmid_name": "pLgw EcoDam-V5-ELK1Y158A", "sequence-type": "addgene-full", "addgene_id": "98608", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -457446,7 +485210,10 @@ "plasmid_name": "pDONR223_NFKBIA_p.P137S", "sequence-type": "addgene-full", "addgene_id": "81367", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -457478,7 +485245,10 @@ "plasmid_name": "MAC_N_PAX9", "sequence-type": "addgene-full", "addgene_id": "167789", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -457523,7 +485293,10 @@ "plasmid_name": "MAC_C_NTRK3", "sequence-type": "addgene-full", "addgene_id": "187754", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -457568,7 +485341,10 @@ "plasmid_name": "GFP-JIP4", "sequence-type": "addgene-full", "addgene_id": "164620", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "att_sites": [ "attB1", @@ -457620,7 +485396,10 @@ "plasmid_name": "pENTR223-BALF3", "sequence-type": "addgene-full", "addgene_id": "195828", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -457649,7 +485428,9 @@ "plasmid_name": "pDONR207-MpPHOT", "sequence-type": "addgene-full", "addgene_id": "100600", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27027881" + ], "kit": null, "att_sites": [ "attL1", @@ -457673,7 +485454,10 @@ "plasmid_name": "pCellFree_G03 RUVBL1", "sequence-type": "addgene-full", "addgene_id": "67091", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "att_sites": [ "attB1", @@ -457710,7 +485494,10 @@ "plasmid_name": "pHAGE-PTEN-R233*", "sequence-type": "addgene-full", "addgene_id": "116633", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -457759,7 +485546,10 @@ "plasmid_name": "LTN1_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53855", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "att_sites": [ "attB1", @@ -457798,7 +485588,6 @@ "plasmid_name": "TCF4 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216569", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -457828,7 +485617,10 @@ "plasmid_name": "pENTR-L1-U6-BbsI-R5", "sequence-type": "addgene-full", "addgene_id": "141031", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL1", @@ -457853,7 +485645,6 @@ "plasmid_name": "IDG_CACNG6_OE_1", "sequence-type": "addgene-full", "addgene_id": "161696", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -457912,7 +485703,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-HNRNPD", "sequence-type": "depositor-full", "addgene_id": "38066", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "att_sites": [ "attB1", @@ -457959,7 +485753,10 @@ "plasmid_name": "pDONR P2R-P3-V5-6xHis", "sequence-type": "depositor-full", "addgene_id": "48347", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -457995,7 +485792,10 @@ "plasmid_name": "pOPTXGARE", "sequence-type": "depositor-full", "addgene_id": "68542", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-13-97", + "https://www.ncbi.nlm.nih.gov/pubmed/24206622" + ], "kit": null, "att_sites": [ "attB1", @@ -458034,7 +485834,10 @@ "plasmid_name": "pEF5B-FRT-control-APEX", "sequence-type": "depositor-full", "addgene_id": "73187", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.015", + "https://www.ncbi.nlm.nih.gov/pubmed/26585297" + ], "kit": null, "att_sites": [ "attB1", @@ -458084,7 +485887,6 @@ "plasmid_name": "pAG416GAL10-Bat-CoV-HKU4_3CL", "sequence-type": "addgene-full", "addgene_id": "201943", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -458133,7 +485935,10 @@ "plasmid_name": "pHAGE-GUCY2C-G549C", "sequence-type": "addgene-full", "addgene_id": "116407", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -458187,7 +485992,10 @@ "plasmid_name": "RET_KD-V5", "sequence-type": "addgene-full", "addgene_id": "139628", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -458238,7 +486046,10 @@ "plasmid_name": "Active Wnt9B-V5", "sequence-type": "depositor-full", "addgene_id": "43821", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -458286,7 +486097,10 @@ "plasmid_name": "pDL217", "sequence-type": "addgene-full", "addgene_id": "175921", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -458310,7 +486124,10 @@ "plasmid_name": "pLX317 YAP1", "sequence-type": "addgene-full", "addgene_id": "193683", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -458370,7 +486187,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aa3.8.3", "sequence-type": "addgene-full", "addgene_id": "136374", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL2", @@ -458400,7 +486220,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-1", "sequence-type": "depositor-full", "addgene_id": "46688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -458451,7 +486274,10 @@ "plasmid_name": "457 p3E-2A-EGFPpA", "sequence-type": "addgene-full", "addgene_id": "195967", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL3", @@ -458489,7 +486315,10 @@ "plasmid_name": "pSC26", "sequence-type": "addgene-full", "addgene_id": "104800", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -458532,7 +486361,10 @@ "plasmid_name": "pMx/ATP11B(E180Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209262", - "references": [], + "references": [ + "https://doi.org/10.1002/1873-3468.13629", + "https://www.ncbi.nlm.nih.gov/pubmed/31571211" + ], "kit": null, "att_sites": [ "attB1", @@ -458567,7 +486399,6 @@ "plasmid_name": "pENTR-mKO1", "sequence-type": "addgene-full", "addgene_id": "139553", - "references": [], "kit": null, "file": "data/addgene_plasmids/139553.addgene-full.gb" }, @@ -458576,7 +486407,10 @@ "plasmid_name": "pDONR223-ABL1", "sequence-type": "addgene-full", "addgene_id": "23939", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -458608,7 +486442,10 @@ "plasmid_name": "R4pGWB401+Citrine", "sequence-type": "addgene-full", "addgene_id": "128432", - "references": [], + "references": [ + "https://doi.org/10.1007/s11103-019-00909-8", + "https://www.ncbi.nlm.nih.gov/pubmed/31422517" + ], "kit": null, "att_sites": [ "attR2", @@ -458659,7 +486496,6 @@ "plasmid_name": "p667-UBC-PKMYT1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135246", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -458724,7 +486560,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-UD-mCherr", "sequence-type": "addgene-full", "addgene_id": "140307", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -458780,7 +486619,10 @@ "plasmid_name": "pDONR221-ZNF441", "sequence-type": "depositor-full", "addgene_id": "101508", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -458811,7 +486653,10 @@ "plasmid_name": "TroponinT-Gateway", "sequence-type": "depositor-full", "addgene_id": "46026", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "att_sites": [ "attR1", @@ -458876,7 +486721,10 @@ "plasmid_name": "pDONR223_EDNRB_p.F292L", "sequence-type": "addgene-full", "addgene_id": "81402", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -458908,7 +486756,10 @@ "plasmid_name": "p3E-mTagBFP-CAAX", "sequence-type": "depositor-full", "addgene_id": "75176", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -458943,7 +486794,10 @@ "plasmid_name": "pEPYCdKN0009", "sequence-type": "addgene-full", "addgene_id": "196150", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attB1", @@ -458983,7 +486837,9 @@ "plasmid_name": "pPB-cT3G-cERP2-HHEX", "sequence-type": "addgene-full", "addgene_id": "222928", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "att_sites": [ "attB1", @@ -459029,7 +486885,10 @@ "plasmid_name": "TFORF3506", "sequence-type": "addgene-full", "addgene_id": "144982", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -459089,7 +486948,9 @@ "plasmid_name": "pDONR221-FKBP8(2of2)", "sequence-type": "addgene-full", "addgene_id": "166175", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -459120,7 +486981,10 @@ "plasmid_name": "pDONR-AFB2", "sequence-type": "depositor-full", "addgene_id": "83845", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -459151,7 +487015,10 @@ "plasmid_name": "pGCS-N2(3xHA)", "sequence-type": "addgene-full", "addgene_id": "85719", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -459199,7 +487066,10 @@ "plasmid_name": "pBA2219", "sequence-type": "depositor-full", "addgene_id": "38152", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2011.11.015", + "https://www.ncbi.nlm.nih.gov/pubmed/22197595" + ], "kit": null, "att_sites": [ "attB1", @@ -459226,7 +487096,10 @@ "plasmid_name": "TFORF3160", "sequence-type": "addgene-full", "addgene_id": "144636", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -459286,7 +487159,10 @@ "plasmid_name": "pDEST 544-XERICO", "sequence-type": "addgene-full", "addgene_id": "118673", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -459328,7 +487204,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp5", "sequence-type": "depositor-full", "addgene_id": "168818", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -459357,7 +487236,10 @@ "plasmid_name": "pHAGE-BRAF-G469S", "sequence-type": "addgene-full", "addgene_id": "116156", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -459412,7 +487294,10 @@ "plasmid_name": "pDONR223_SPOP_WT", "sequence-type": "addgene-full", "addgene_id": "81856", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -459444,7 +487329,6 @@ "plasmid_name": "pCWXPGR-pTF-EpoRtm", "sequence-type": "addgene-full", "addgene_id": "114286", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -459504,7 +487388,10 @@ "plasmid_name": "pFG7m34GW", "sequence-type": "addgene-full", "addgene_id": "133747", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "att_sites": [ "attR3", @@ -459548,7 +487435,10 @@ "plasmid_name": "pTol2p2A--3mnx1:mTagBFP-NS-MCS", "sequence-type": "addgene-full", "addgene_id": "78250", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -459595,7 +487485,10 @@ "plasmid_name": "pDONR221-kcnk3a", "sequence-type": "addgene-full", "addgene_id": "208985", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -459626,7 +487519,10 @@ "plasmid_name": "FU-MAP2-Gateway", "sequence-type": "depositor-full", "addgene_id": "43915", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0028719", + "https://www.ncbi.nlm.nih.gov/pubmed/22174877" + ], "kit": null, "att_sites": [ "attR1", @@ -459690,7 +487586,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway mmu SE-Irf2bpl H", "sequence-type": "addgene-full", "addgene_id": "89377", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -459745,7 +487644,10 @@ "plasmid_name": "pDONR223_PEX3_WT", "sequence-type": "addgene-full", "addgene_id": "81779", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -459777,7 +487679,10 @@ "plasmid_name": "pJW4.21", "sequence-type": "depositor-full", "addgene_id": "62875", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -459821,7 +487726,10 @@ "plasmid_name": "TFORF3443", "sequence-type": "addgene-full", "addgene_id": "144919", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144919.addgene-full.gb" }, @@ -459830,7 +487738,10 @@ "plasmid_name": "pME-FusionRed-NS", "sequence-type": "addgene-full", "addgene_id": "80500", - "references": [], + "references": [ + "https://doi.org/10.1080/21592799.2017.1301151", + "https://www.ncbi.nlm.nih.gov/pubmed/28396820" + ], "kit": null, "att_sites": [ "attL1", @@ -459862,7 +487773,10 @@ "plasmid_name": "KP501: pMVP (L5-L4) eYFP-P2A", "sequence-type": "addgene-full", "addgene_id": "121714", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -459899,7 +487813,10 @@ "plasmid_name": "pDONR223_FBXW7_p.R465C", "sequence-type": "addgene-full", "addgene_id": "81499", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -459931,7 +487848,10 @@ "plasmid_name": "pDONR223_DNAJC15_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82964", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -459960,7 +487880,10 @@ "plasmid_name": "TFORF3023", "sequence-type": "addgene-full", "addgene_id": "144499", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -460020,7 +487943,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf6", "sequence-type": "addgene-full", "addgene_id": "158374", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -460065,7 +487991,10 @@ "plasmid_name": "5'-3xFLAG L3mbtl3-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212058", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -460105,7 +488034,10 @@ "plasmid_name": "pDONR223_STK19_WT", "sequence-type": "addgene-full", "addgene_id": "81919", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -460137,7 +488069,10 @@ "plasmid_name": "pDONR221-SLC35D2_STOP", "sequence-type": "addgene-full", "addgene_id": "161288", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -460168,7 +488103,10 @@ "plasmid_name": "pCS2+ Bmi1-cherry-HA", "sequence-type": "depositor-full", "addgene_id": "30516", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2011.144", + "https://www.ncbi.nlm.nih.gov/pubmed/21552206" + ], "kit": null, "att_sites": [ "attB1", @@ -460211,7 +488149,10 @@ "plasmid_name": "pT3-EFa1-HA-Jag1", "sequence-type": "addgene-full", "addgene_id": "46051", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2013.02.009", + "https://www.ncbi.nlm.nih.gov/pubmed/23419361" + ], "kit": null, "att_sites": [ "attB1", @@ -460257,7 +488198,10 @@ "plasmid_name": "TXNIP-py", "sequence-type": "addgene-full", "addgene_id": "200090", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2023.106150", + "https://www.ncbi.nlm.nih.gov/pubmed/36890792" + ], "kit": null, "att_sites": [ "attB1", @@ -460309,7 +488253,10 @@ "plasmid_name": "FZD8", "sequence-type": "addgene-full", "addgene_id": "155618", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -460353,7 +488300,10 @@ "plasmid_name": "pEN_TT 3xFLAG-KPNA1", "sequence-type": "addgene-full", "addgene_id": "192304", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -460382,7 +488332,6 @@ "plasmid_name": "L1-10XQUAS-R5", "sequence-type": "depositor-full", "addgene_id": "41435", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -460415,7 +488364,10 @@ "plasmid_name": "TFORF3303", "sequence-type": "addgene-full", "addgene_id": "144779", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -460475,7 +488427,10 @@ "plasmid_name": "TFORF3380", "sequence-type": "addgene-full", "addgene_id": "144856", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -460535,7 +488490,10 @@ "plasmid_name": "pDONR221_MFSD4A", "sequence-type": "addgene-full", "addgene_id": "131917", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -460567,7 +488525,10 @@ "plasmid_name": "pDEST-hPDI", "sequence-type": "depositor-full", "addgene_id": "60555", - "references": [], + "references": [ + "https://doi.org/10.1007/s12010-013-0140-3", + "https://www.ncbi.nlm.nih.gov/pubmed/23471584" + ], "kit": null, "att_sites": [ "attR1", @@ -460612,7 +488573,10 @@ "plasmid_name": "pEBTetBl-CLIP-FOP", "sequence-type": "addgene-full", "addgene_id": "136845", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -460658,7 +488622,6 @@ "plasmid_name": "R777-E227 Hs.RASA1", "sequence-type": "depositor-full", "addgene_id": "70511", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -460687,7 +488650,6 @@ "plasmid_name": "pTAU-CN-DM", "sequence-type": "addgene-full", "addgene_id": "111230", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -460732,7 +488694,10 @@ "plasmid_name": "pDONR221-SLC22A18_STOP", "sequence-type": "addgene-full", "addgene_id": "161213", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -460763,7 +488728,10 @@ "plasmid_name": "PRKCDPB_pLX307", "sequence-type": "addgene-full", "addgene_id": "98359", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -460823,7 +488791,10 @@ "plasmid_name": "pDONR223_ASCL4_p.T114M", "sequence-type": "addgene-full", "addgene_id": "81636", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -460855,7 +488826,10 @@ "plasmid_name": "actc1b-mKate2-RhoAa-DN", "sequence-type": "addgene-full", "addgene_id": "109526", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -460897,7 +488871,10 @@ "plasmid_name": "pEntry_MERS-CoV-ORF5", "sequence-type": "addgene-full", "addgene_id": "168830", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -460926,7 +488903,10 @@ "plasmid_name": "KO701: pMVP (L3-L2) HA tag + pA; EF1a::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121806", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -460963,7 +488943,10 @@ "plasmid_name": "pGCS-C1m(5xMYC)", "sequence-type": "addgene-full", "addgene_id": "85724", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -461011,7 +488994,9 @@ "plasmid_name": "pMpGWB201", "sequence-type": "depositor-full", "addgene_id": "68592", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -461058,7 +489043,9 @@ "plasmid_name": "pDEST17-His10-Smt3-ccdB-SNAP", "sequence-type": "addgene-full", "addgene_id": "166148", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attR1", @@ -461101,7 +489088,10 @@ "plasmid_name": "pRSET-Cm-CspA1", "sequence-type": "addgene-full", "addgene_id": "215398", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2319499121", + "https://www.ncbi.nlm.nih.gov/pubmed/38814867" + ], "kit": null, "att_sites": [ "attB1", @@ -461133,7 +489123,10 @@ "plasmid_name": "EHD2-T72A-mEGFP", "sequence-type": "depositor-full", "addgene_id": "45934", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2012.98", + "https://www.ncbi.nlm.nih.gov/pubmed/22505029" + ], "kit": null, "att_sites": [ "attB1", @@ -461174,7 +489167,6 @@ "plasmid_name": "pLEX_306", "sequence-type": "addgene-full", "addgene_id": "41391", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -461238,7 +489230,9 @@ "plasmid_name": "pPB-cT3G-cERP2-DMC1", "sequence-type": "addgene-full", "addgene_id": "222541", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -461284,7 +489278,10 @@ "plasmid_name": "pGADT7-GW", "sequence-type": "addgene-full", "addgene_id": "61702", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2009.04048.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19843313" + ], "kit": null, "att_sites": [ "attR1", @@ -461333,7 +489330,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-60", "sequence-type": "depositor-full", "addgene_id": "46658", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -461383,7 +489383,10 @@ "plasmid_name": "p7138 pHAGE-P-CMVt-N-HA-GAW-PHKB", "sequence-type": "addgene-full", "addgene_id": "100158", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -461435,7 +489438,10 @@ "plasmid_name": "pDONR223_STK11_WT", "sequence-type": "addgene-full", "addgene_id": "81744", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -461447,7 +489453,10 @@ "plasmid_name": "MultiMate-Rainbow", "sequence-type": "addgene-full", "addgene_id": "206252", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attB1", @@ -461505,7 +489514,10 @@ "plasmid_name": "pAG306GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14308", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -461563,7 +489575,9 @@ "plasmid_name": "pME-Myc-BioID2-MCS2 (JDW 1209)", "sequence-type": "addgene-full", "addgene_id": "224511", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -461597,7 +489611,10 @@ "plasmid_name": "R620-M21-303: CMV51p> SARS-CoV-2 S(1-1213)-2P-T4f-His6 B.1.429", "sequence-type": "addgene-full", "addgene_id": "170200", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -461652,7 +489669,10 @@ "plasmid_name": "pDONR221-SLC6A16_STOP", "sequence-type": "addgene-full", "addgene_id": "161361", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -461683,7 +489703,10 @@ "plasmid_name": "pGWB416", "sequence-type": "depositor-full", "addgene_id": "74810", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -461731,7 +489754,10 @@ "plasmid_name": "pDONR221-ZNF234", "sequence-type": "depositor-full", "addgene_id": "101611", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -461762,7 +489788,10 @@ "plasmid_name": "TFORF3094", "sequence-type": "addgene-full", "addgene_id": "144570", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -461822,7 +489851,10 @@ "plasmid_name": "pDONR221_SLC6A14", "sequence-type": "addgene-full", "addgene_id": "131865", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -461853,7 +489885,10 @@ "plasmid_name": "TFORF3214", "sequence-type": "addgene-full", "addgene_id": "144690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -461913,7 +489948,10 @@ "plasmid_name": "TFORF3448", "sequence-type": "addgene-full", "addgene_id": "144924", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -461973,7 +490011,6 @@ "plasmid_name": "R777-E037 Hs.DUSP3", "sequence-type": "depositor-full", "addgene_id": "70321", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -462001,7 +490038,10 @@ "plasmid_name": "pHAGE-BRAF-W531C", "sequence-type": "addgene-full", "addgene_id": "116210", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -462056,7 +490096,10 @@ "plasmid_name": "pDONR223_RBKS_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82959", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -462085,7 +490128,10 @@ "plasmid_name": "pDONR221-SLC6A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161081", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -462116,7 +490162,10 @@ "plasmid_name": "pDONR223_NKX2-1_V205F", "sequence-type": "addgene-full", "addgene_id": "221473", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attL1", @@ -462145,7 +490194,10 @@ "plasmid_name": "IG101: pMVP (L5-L4) TRE promoter", "sequence-type": "addgene-full", "addgene_id": "121729", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -462179,7 +490231,10 @@ "plasmid_name": "pMXs-c-Myc-IP", "sequence-type": "addgene-full", "addgene_id": "15921", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.07.024", + "https://www.ncbi.nlm.nih.gov/pubmed/16904174" + ], "kit": null, "att_sites": [ "attB1", @@ -462213,7 +490268,6 @@ "plasmid_name": "R777-E324 Hs.SPRED2-nostop", "sequence-type": "depositor-full", "addgene_id": "70608", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -462241,7 +490295,10 @@ "plasmid_name": "p3E-RhoAb-DN", "sequence-type": "addgene-full", "addgene_id": "109580", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -462272,7 +490329,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.H36Y", "sequence-type": "addgene-full", "addgene_id": "81690", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -462304,7 +490364,10 @@ "plasmid_name": "p8180 pHAGE N-V5 PTPN14 \u0394PPXY3/4", "sequence-type": "addgene-full", "addgene_id": "221647", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "att_sites": [ "attB1", @@ -462356,7 +490419,6 @@ "plasmid_name": "pOLENTE", "sequence-type": "depositor-full", "addgene_id": "80683", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -462392,7 +490454,10 @@ "plasmid_name": "pDONR223_SV2C_WT", "sequence-type": "addgene-full", "addgene_id": "81924", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -462424,7 +490489,10 @@ "plasmid_name": "5'-3xFLAG Mef2d+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212065", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -462464,7 +490532,10 @@ "plasmid_name": "pDONR221-SLC22A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161155", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -462495,7 +490566,10 @@ "plasmid_name": "pHWBF07EC", "sequence-type": "addgene-full", "addgene_id": "130828", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attL1", @@ -462529,7 +490603,10 @@ "plasmid_name": "pDONR223_POT1_p.L388M", "sequence-type": "addgene-full", "addgene_id": "81570", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -462561,7 +490638,10 @@ "plasmid_name": "pDONR223_RIT1_p.F82L", "sequence-type": "addgene-full", "addgene_id": "82739", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -462593,7 +490673,10 @@ "plasmid_name": "pDONR223-SLC7A11 sh926R", "sequence-type": "addgene-full", "addgene_id": "118701", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.042", + "https://www.ncbi.nlm.nih.gov/pubmed/27368101" + ], "kit": null, "att_sites": [ "attL1", @@ -462622,7 +490705,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-Erbb2 NLS zeo", "sequence-type": "addgene-full", "addgene_id": "192339", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -462694,7 +490780,10 @@ "plasmid_name": "GLE1", "sequence-type": "addgene-full", "addgene_id": "155625", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -462737,7 +490826,10 @@ "plasmid_name": "TFORF3268", "sequence-type": "addgene-full", "addgene_id": "144744", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -462797,7 +490889,10 @@ "plasmid_name": "actc1b-mKate2-rab9b", "sequence-type": "addgene-full", "addgene_id": "109660", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -462839,7 +490934,6 @@ "plasmid_name": "pENTR223 Rab11A WT-STOP", "sequence-type": "addgene-full", "addgene_id": "228030", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -462868,7 +490962,10 @@ "plasmid_name": "pAG425GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14346", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -462930,7 +491027,10 @@ "plasmid_name": "pcDNA3_SP-HTR2A-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194369", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -462987,7 +491087,10 @@ "plasmid_name": "pCM3.06", "sequence-type": "depositor-full", "addgene_id": "19602", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.0030233", + "https://www.ncbi.nlm.nih.gov/pubmed/18166083" + ], "kit": null, "att_sites": [ "attL1", @@ -463010,7 +491113,6 @@ "plasmid_name": "pENTR_Wheat_live_Cas9", "sequence-type": "addgene-full", "addgene_id": "126880", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -463047,7 +491149,10 @@ "plasmid_name": "pE3n", "sequence-type": "depositor-full", "addgene_id": "17457", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -463072,7 +491177,10 @@ "plasmid_name": "pDONR223_BRAF_p.D594H", "sequence-type": "addgene-full", "addgene_id": "82816", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -463102,7 +491210,10 @@ "plasmid_name": "pEBTetBl-CLIP-Centrobin", "sequence-type": "addgene-full", "addgene_id": "136878", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -463147,7 +491258,10 @@ "plasmid_name": "pDEST-ERBB3-v1", "sequence-type": "addgene-full", "addgene_id": "154893", - "references": [], + "references": [ + "https://doi.org/10.1038/s41388-020-01604-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33420373" + ], "kit": null, "att_sites": [ "attB1", @@ -463180,7 +491294,10 @@ "plasmid_name": "NPRL2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98364", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -463240,7 +491357,10 @@ "plasmid_name": "pAD-CMV-STAT5B-DN-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83262", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "file": "data/addgene_plasmids/83262.addgene-full.gb" }, @@ -463249,7 +491369,10 @@ "plasmid_name": "pHAGE-WDR12-Q93K", "sequence-type": "addgene-full", "addgene_id": "116706", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -463304,7 +491427,6 @@ "plasmid_name": "R777-E255 Hs.RASSF2", "sequence-type": "depositor-full", "addgene_id": "70539", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -463332,7 +491454,10 @@ "plasmid_name": "pYPQ265C", "sequence-type": "addgene-full", "addgene_id": "164715", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -463368,7 +491493,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term COILIN", "sequence-type": "addgene-full", "addgene_id": "187581", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -463412,7 +491540,10 @@ "plasmid_name": "LYSO-LRRK2", "sequence-type": "addgene-full", "addgene_id": "193582", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2205492119", + "https://www.ncbi.nlm.nih.gov/pubmed/36256825" + ], "kit": null, "att_sites": [ "attB1", @@ -463457,7 +491588,6 @@ "plasmid_name": "IDG_GLRA3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161677", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -463516,7 +491646,10 @@ "plasmid_name": "pCAG/ATP11A-HA", "sequence-type": "addgene-full", "addgene_id": "209218", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -463561,7 +491694,6 @@ "plasmid_name": "pENTR-R2L3-IRES-puro-pA", "sequence-type": "addgene-full", "addgene_id": "139529", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -463600,7 +491732,10 @@ "plasmid_name": "pDONR223-PTK7", "sequence-type": "addgene-full", "addgene_id": "23943", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -463630,7 +491765,10 @@ "plasmid_name": "pGMCS-0X-P38-PanBmGFP", "sequence-type": "depositor-full", "addgene_id": "27127", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1001040", + "https://www.ncbi.nlm.nih.gov/pubmed/20711362" + ], "kit": null, "att_sites": [ "attB1", @@ -463663,7 +491801,6 @@ "plasmid_name": "pAG416GAL-Bat-SL-CoVZC45_PLP", "sequence-type": "addgene-full", "addgene_id": "201939", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -463714,7 +491851,9 @@ "plasmid_name": "p3E LAP2b", "sequence-type": "addgene-full", "addgene_id": "105978", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30120238" + ], "kit": null, "att_sites": [ "attL3", @@ -463745,7 +491884,10 @@ "plasmid_name": "R702-X31-566: His6-MBP-tev-G-Hs.PDE6D(2-150)", "sequence-type": "addgene-full", "addgene_id": "159689", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1615316113", + "https://www.ncbi.nlm.nih.gov/pubmed/27791178" + ], "kit": null, "att_sites": [ "attB1", @@ -463791,7 +491933,10 @@ "plasmid_name": "pDONR223_ELF3_WT", "sequence-type": "addgene-full", "addgene_id": "82080", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -463823,7 +491968,10 @@ "plasmid_name": "R701-X21-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) G12D", "sequence-type": "addgene-full", "addgene_id": "159569", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -463872,7 +492020,10 @@ "plasmid_name": "pDONR221_SLC25A2", "sequence-type": "addgene-full", "addgene_id": "132015", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -463903,7 +492054,10 @@ "plasmid_name": "pENTR221-YAP1 CA", "sequence-type": "addgene-full", "addgene_id": "79502", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -463935,7 +492089,10 @@ "plasmid_name": "pCPP5372", "sequence-type": "addgene-full", "addgene_id": "128733", - "references": [], + "references": [ + "https://doi.org/10.1128/JB.00998-07", + "https://www.ncbi.nlm.nih.gov/pubmed/17827286" + ], "kit": null, "att_sites": [ "attR1", @@ -463970,7 +492127,10 @@ "plasmid_name": "pHAGE-NTRK3__RBPMS", "sequence-type": "addgene-full", "addgene_id": "116829", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -464021,7 +492181,10 @@ "plasmid_name": "pENTR1a-jAspSnFR3-mRuby3-NLS", "sequence-type": "addgene-full", "addgene_id": "203489", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "att_sites": [ "attL1", @@ -464049,7 +492212,6 @@ "plasmid_name": "R777-E293 Hs.RPS6KA3", "sequence-type": "depositor-full", "addgene_id": "70577", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -464077,7 +492239,10 @@ "plasmid_name": "pTORGm43GWY", "sequence-type": "addgene-full", "addgene_id": "112906", - "references": [], + "references": [ + "https://doi.org/10.1186/s12866-019-1642-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31775609" + ], "kit": null, "att_sites": [ "attR3", @@ -464126,7 +492291,10 @@ "plasmid_name": "K202R-short-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "195406", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "att_sites": [ "attB1", @@ -464176,7 +492344,10 @@ "plasmid_name": "pDONR223_POU5F1_WT", "sequence-type": "addgene-full", "addgene_id": "82154", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -464205,7 +492376,10 @@ "plasmid_name": "pLCS104", "sequence-type": "addgene-full", "addgene_id": "209357", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -464246,7 +492420,10 @@ "plasmid_name": "pCW57.1-ZNF746-C571A", "sequence-type": "addgene-full", "addgene_id": "207826", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207826.addgene-full.gb" }, @@ -464255,7 +492432,10 @@ "plasmid_name": "pYPQ265E8", "sequence-type": "addgene-full", "addgene_id": "213471", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-024-49473-w", + "https://www.ncbi.nlm.nih.gov/pubmed/38877035" + ], "kit": null, "att_sites": [ "attL1", @@ -464290,7 +492470,10 @@ "plasmid_name": "pENTR D-TOPO-C3_10", "sequence-type": "addgene-full", "addgene_id": "60259", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -464321,7 +492504,10 @@ "plasmid_name": "pDONR221_SLC7A7", "sequence-type": "addgene-full", "addgene_id": "132221", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -464352,7 +492538,10 @@ "plasmid_name": "pPB-cT3G-cERP2-NR2F2", "sequence-type": "addgene-full", "addgene_id": "192900", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -464399,7 +492588,10 @@ "plasmid_name": "pHAGE-RAC1-P29L", "sequence-type": "addgene-full", "addgene_id": "116649", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116649.addgene-full.gb" }, @@ -464408,7 +492600,10 @@ "plasmid_name": "pENTR221 UBR5 \u2206PABC", "sequence-type": "depositor-full", "addgene_id": "81064", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "att_sites": [ "attL1", @@ -464439,7 +492634,10 @@ "plasmid_name": "C413-E33: attB4-UbCp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162925", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -464473,7 +492671,10 @@ "plasmid_name": "pCZGY847", "sequence-type": "addgene-full", "addgene_id": "135093", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.1000265", + "https://www.ncbi.nlm.nih.gov/pubmed/20027209" + ], "kit": null, "att_sites": [ "attB1", @@ -464506,7 +492707,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 366-852)", "sequence-type": "addgene-full", "addgene_id": "119315", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -464558,7 +492762,10 @@ "plasmid_name": "pCellFree_G06_ZIKV PrM", "sequence-type": "addgene-full", "addgene_id": "145350", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -464593,7 +492800,10 @@ "plasmid_name": "pDEST15-Eps8L2", "sequence-type": "addgene-full", "addgene_id": "196534", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attB1", @@ -464627,7 +492837,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0528-luc2", "sequence-type": "addgene-full", "addgene_id": "214658", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -464672,7 +492885,10 @@ "plasmid_name": "pDONR221-SLC26A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161443", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -464703,7 +492919,10 @@ "plasmid_name": "pENTR/D-Topo genomic A. thaliana IMPORTIN ALPHA 1", "sequence-type": "addgene-full", "addgene_id": "175814", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12691", + "https://www.ncbi.nlm.nih.gov/pubmed/25284001" + ], "kit": null, "att_sites": [ "attL1", @@ -464734,7 +492953,6 @@ "plasmid_name": "EEF1A2 - D252H in pENTR", "sequence-type": "addgene-full", "addgene_id": "216588", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -464763,7 +492981,10 @@ "plasmid_name": "pDest_U6_A2_CG2_T2_gRNA", "sequence-type": "addgene-full", "addgene_id": "199388", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "att_sites": [ "attR3", @@ -464807,7 +493028,10 @@ "plasmid_name": "pHAGE-PIK3CA-R108H", "sequence-type": "addgene-full", "addgene_id": "116532", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -464861,7 +493085,10 @@ "plasmid_name": "pLD-puro-Cc-TARDBP-G368A_VA", "sequence-type": "addgene-full", "addgene_id": "141330", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "att_sites": [ "attB1", @@ -464923,7 +493150,9 @@ "plasmid_name": "pME-GAL4-ERT2-VP16", "sequence-type": "depositor-full", "addgene_id": "82588", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24643048" + ], "kit": null, "att_sites": [ "attL1", @@ -464958,7 +493187,10 @@ "plasmid_name": "pDONR221 Fpr3", "sequence-type": "depositor-full", "addgene_id": "63745", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -464989,7 +493221,10 @@ "plasmid_name": "pCFJ2059 - [1-2] ENTR - Tag - Halo (intron(1), syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159872", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -465020,7 +493255,10 @@ "plasmid_name": "DUX4 pDonor221", "sequence-type": "addgene-full", "addgene_id": "187801", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attL1", @@ -465051,7 +493289,10 @@ "plasmid_name": "pDONR223_MAGEC2_p.R287W", "sequence-type": "addgene-full", "addgene_id": "81386", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -465083,7 +493324,10 @@ "plasmid_name": "pB-6HIS-TEV-mEGFP,IRES-NGFR", "sequence-type": "addgene-full", "addgene_id": "164521", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.10.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33080218" + ], "kit": null, "att_sites": [ "attR1", @@ -465150,7 +493394,10 @@ "plasmid_name": "pDONRp5-p2 GFP-NShroom3-iLID", "sequence-type": "addgene-full", "addgene_id": "170976", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33115-0", + "https://www.ncbi.nlm.nih.gov/pubmed/36104355" + ], "kit": null, "att_sites": [ "attL2", @@ -465188,7 +493435,6 @@ "plasmid_name": "pLEX307-APN-G418", "sequence-type": "addgene-full", "addgene_id": "158456", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -465248,7 +493494,6 @@ "plasmid_name": "pLenti6.3_DTX1", "sequence-type": "addgene-full", "addgene_id": "124080", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -465308,7 +493553,10 @@ "plasmid_name": "MAC_C_LAMP1", "sequence-type": "addgene-full", "addgene_id": "111669", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -465354,7 +493602,10 @@ "plasmid_name": "pGWB542", "sequence-type": "depositor-full", "addgene_id": "74876", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -465405,7 +493656,10 @@ "plasmid_name": "pcdna6.2- myc ULK1 4SA", "sequence-type": "addgene-full", "addgene_id": "27631", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1196371", + "https://www.ncbi.nlm.nih.gov/pubmed/21205641" + ], "kit": null, "att_sites": [ "attB1", @@ -465456,7 +493710,10 @@ "plasmid_name": "pRU321", "sequence-type": "addgene-full", "addgene_id": "167681", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -465502,7 +493759,10 @@ "plasmid_name": "GFP-UBR5 \u2206HECT", "sequence-type": "depositor-full", "addgene_id": "52051", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.039", + "https://www.ncbi.nlm.nih.gov/pubmed/22884692" + ], "kit": null, "att_sites": [ "attB1", @@ -465554,7 +493814,10 @@ "plasmid_name": "pYPQ141B", "sequence-type": "depositor-full", "addgene_id": "69291", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL2", @@ -465584,7 +493847,10 @@ "plasmid_name": "SIN-PGK-Cas9-V5-WPRE", "sequence-type": "depositor-full", "addgene_id": "87876", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "att_sites": [ "attB1", @@ -465636,7 +493902,6 @@ "plasmid_name": "R777-E063 Hs.ETS1", "sequence-type": "depositor-full", "addgene_id": "70347", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -465664,7 +493929,10 @@ "plasmid_name": "pMx/ATP8A1-HA", "sequence-type": "addgene-full", "addgene_id": "209225", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -465699,7 +493967,10 @@ "plasmid_name": "pHAGE-NOTCH2NL-Q172_G173delinsHC", "sequence-type": "addgene-full", "addgene_id": "116440", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -465754,7 +494025,6 @@ "plasmid_name": "R777-E336 Hs.STK11-nostop", "sequence-type": "depositor-full", "addgene_id": "70620", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -465782,7 +494052,10 @@ "plasmid_name": "pSEM235 - [Pmlc-1 | mcherry | cbr-tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159900", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000302", + "https://www.ncbi.nlm.nih.gov/pubmed/32908967" + ], "kit": null, "att_sites": [ "attB1", @@ -465815,7 +494088,10 @@ "plasmid_name": "pENTR_Mm_CEP55(WT)", "sequence-type": "addgene-full", "addgene_id": "136333", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-05429-5", + "https://www.ncbi.nlm.nih.gov/pubmed/30069007" + ], "kit": null, "att_sites": [ "attL1", @@ -465846,7 +494122,10 @@ "plasmid_name": "pCFJ356 - MCS(cxTi10816, IV)", "sequence-type": "depositor-full", "addgene_id": "34871", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attB1", @@ -465879,7 +494158,10 @@ "plasmid_name": "R989-X27-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12C", "sequence-type": "addgene-full", "addgene_id": "159554", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -465920,7 +494202,10 @@ "plasmid_name": "LIIc F 3-4", "sequence-type": "depositor-full", "addgene_id": "54369", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "att_sites": [ "attR1", @@ -465952,7 +494237,10 @@ "plasmid_name": "pCLX-pTF-R1-DEST-R2-EBR65", "sequence-type": "depositor-full", "addgene_id": "45952", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "att_sites": [ "attR1", @@ -466010,7 +494298,10 @@ "plasmid_name": "pHAGE-DUSP22__PTK7", "sequence-type": "addgene-full", "addgene_id": "116814", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -466061,7 +494352,10 @@ "plasmid_name": "pDONR221_SLC25A29", "sequence-type": "addgene-full", "addgene_id": "132028", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -466092,7 +494386,10 @@ "plasmid_name": "pME-6MTzactMap2k2b", "sequence-type": "depositor-full", "addgene_id": "67710", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "att_sites": [ "attL1", @@ -466123,7 +494420,10 @@ "plasmid_name": "pDONR223_GCET2_p.H177Q", "sequence-type": "addgene-full", "addgene_id": "81320", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -466155,7 +494455,6 @@ "plasmid_name": "R777-E209 Hs.RAC2", "sequence-type": "depositor-full", "addgene_id": "70493", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -466167,7 +494466,10 @@ "plasmid_name": "pAG424GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14320", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -466229,7 +494531,10 @@ "plasmid_name": "pHAGE-PIK3R1-H669Q", "sequence-type": "addgene-full", "addgene_id": "116594", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -466280,7 +494585,10 @@ "plasmid_name": "pDONR-53BP1 1-1972 WT", "sequence-type": "addgene-full", "addgene_id": "53446", - "references": [], + "references": [ + "https://doi.org/10.1038/nature12318", + "https://www.ncbi.nlm.nih.gov/pubmed/23760478" + ], "kit": null, "att_sites": [ "attL1", @@ -466311,7 +494619,10 @@ "plasmid_name": "pHAGE-RHOA-Y42S", "sequence-type": "addgene-full", "addgene_id": "116674", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -466362,7 +494673,10 @@ "plasmid_name": "pAAV-EF1a-DIO-mGFP-MutCREB(S133A)", "sequence-type": "addgene-full", "addgene_id": "194642", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-022-01223-1", + "https://www.ncbi.nlm.nih.gov/pubmed/36564546" + ], "kit": null, "att_sites": [ "attB1", @@ -466407,7 +494721,6 @@ "plasmid_name": "R777-E025 Hs.CDK6", "sequence-type": "depositor-full", "addgene_id": "70309", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -466435,7 +494748,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PSKH1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170584", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -466502,7 +494814,10 @@ "plasmid_name": "pLenti GW V5 Eco/Dam hum LaminB1", "sequence-type": "addgene-full", "addgene_id": "182671", - "references": [], + "references": [ + "https://doi.org/10.1038/nature06947", + "https://www.ncbi.nlm.nih.gov/pubmed/18463634" + ], "kit": null, "att_sites": [ "attB1", @@ -466555,7 +494870,10 @@ "plasmid_name": "C239-E02: attB2r-IRES-ffLuc2-eGFP-pA-attB3", "sequence-type": "addgene-full", "addgene_id": "162918", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -466592,7 +494910,10 @@ "plasmid_name": "TFORF3539", "sequence-type": "depositor-full", "addgene_id": "145015", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -466652,7 +494973,10 @@ "plasmid_name": "pDe_Cas9_KANA_R160a", "sequence-type": "addgene-full", "addgene_id": "173756", - "references": [], + "references": [ + "https://doi.org/10.1093/hr/uhac147", + "https://www.ncbi.nlm.nih.gov/pubmed/36072839" + ], "kit": null, "att_sites": [ "attB1", @@ -466697,7 +495021,10 @@ "plasmid_name": "pDONR223_HDAC1_WT", "sequence-type": "addgene-full", "addgene_id": "82212", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -466726,7 +495053,10 @@ "plasmid_name": "pDCC5", "sequence-type": "depositor-full", "addgene_id": "59984", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.114.014126", + "https://www.ncbi.nlm.nih.gov/pubmed/25236734" + ], "kit": null, "att_sites": [ "attB1", @@ -466756,7 +495086,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0547-luc2", "sequence-type": "addgene-full", "addgene_id": "214665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -466801,7 +495134,10 @@ "plasmid_name": "C455-E01: attB4-stuffer-attB5", "sequence-type": "addgene-full", "addgene_id": "162983", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -466828,7 +495164,10 @@ "plasmid_name": "Agrostemma_githago _LysRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202656", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "att_sites": [ "attB1", @@ -466867,7 +495206,10 @@ "plasmid_name": "mpeg:Rab5c-stop-polyA; cmlc2:GFP", "sequence-type": "addgene-full", "addgene_id": "213737", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abp8321", + "https://www.ncbi.nlm.nih.gov/pubmed/36044568" + ], "kit": null, "att_sites": [ "attB1", @@ -466913,7 +495255,10 @@ "plasmid_name": "pDONR221_SLC45A3", "sequence-type": "addgene-full", "addgene_id": "132167", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -466944,7 +495289,10 @@ "plasmid_name": "pSBDEST.Z", "sequence-type": "addgene-full", "addgene_id": "79470", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attR1", @@ -466996,7 +495344,10 @@ "plasmid_name": "pDONR221_SLC30A9", "sequence-type": "addgene-full", "addgene_id": "132287", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -467027,7 +495378,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-let-7a-1", "sequence-type": "depositor-full", "addgene_id": "46670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -467077,7 +495431,10 @@ "plasmid_name": "MAC_C_INSR", "sequence-type": "addgene-full", "addgene_id": "187788", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -467122,7 +495479,10 @@ "plasmid_name": "MAC_N_ETV6", "sequence-type": "addgene-full", "addgene_id": "167755", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -467167,7 +495527,10 @@ "plasmid_name": "pDEST40-2XHA-wtSrc", "sequence-type": "addgene-full", "addgene_id": "140294", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -467219,7 +495582,10 @@ "plasmid_name": "KCNE2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176980", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -467271,7 +495637,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF3a", "sequence-type": "addgene-full", "addgene_id": "169390", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -467314,7 +495679,10 @@ "plasmid_name": "pAG413GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14214", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -467375,7 +495743,10 @@ "plasmid_name": "pDONR223_STAT6_p.N417Y", "sequence-type": "addgene-full", "addgene_id": "81591", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -467407,7 +495778,10 @@ "plasmid_name": "pEBTet-SNAP-CP110", "sequence-type": "addgene-full", "addgene_id": "136802", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136802.addgene-full.gb" }, @@ -467416,7 +495790,10 @@ "plasmid_name": "pcDNA3.2/NS5-YFP", "sequence-type": "addgene-full", "addgene_id": "120831", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -467471,7 +495848,10 @@ "plasmid_name": "p3E-rab24", "sequence-type": "addgene-full", "addgene_id": "109681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -467502,7 +495882,10 @@ "plasmid_name": "pDONR221_SLC10A6", "sequence-type": "addgene-full", "addgene_id": "131950", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -467533,7 +495916,10 @@ "plasmid_name": "pDONR221-MAGT1_STOP", "sequence-type": "depositor-full", "addgene_id": "161468", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -467564,7 +495950,10 @@ "plasmid_name": "pQLinkHD_EBFP2-ECFP", "sequence-type": "addgene-full", "addgene_id": "118854", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "att_sites": [ "attB1", @@ -467602,7 +495991,6 @@ "plasmid_name": "pEF 1-PNH-4", "sequence-type": "depositor-full", "addgene_id": "20083", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -467633,7 +496021,10 @@ "plasmid_name": "pHAGE-ERBB2-A751T", "sequence-type": "addgene-full", "addgene_id": "116325", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -467687,7 +496078,9 @@ "plasmid_name": "pMpGWB408", "sequence-type": "depositor-full", "addgene_id": "68673", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -467740,7 +496133,10 @@ "plasmid_name": "TFORF3335", "sequence-type": "addgene-full", "addgene_id": "144811", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1" @@ -467798,7 +496194,10 @@ "plasmid_name": "pENTR D-TOPO-C3_38", "sequence-type": "depositor-full", "addgene_id": "60279", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -467829,7 +496228,10 @@ "plasmid_name": "TFORF2969", "sequence-type": "addgene-full", "addgene_id": "144445", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -467889,7 +496291,10 @@ "plasmid_name": "p3E-Bin1b", "sequence-type": "addgene-full", "addgene_id": "109561", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -467920,7 +496325,6 @@ "plasmid_name": "pCLX-PGK-hTERT", "sequence-type": "addgene-full", "addgene_id": "114315", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -467971,7 +496375,10 @@ "plasmid_name": "pDONR223_VHL_p.R161P", "sequence-type": "addgene-full", "addgene_id": "81671", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -468003,7 +496410,10 @@ "plasmid_name": "5'-3xFLAG Sap30bp-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212084", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -468043,7 +496453,10 @@ "plasmid_name": "pDONR221 CARD8 PAM", "sequence-type": "addgene-full", "addgene_id": "169975", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -468074,7 +496487,6 @@ "plasmid_name": "pCW57.1_V5_APEX_FLAG_Nt", "sequence-type": "addgene-full", "addgene_id": "194068", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -468133,7 +496545,10 @@ "plasmid_name": "pDONR223 HCoV-229E NSP12_stop", "sequence-type": "addgene-full", "addgene_id": "168758", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -468163,7 +496578,10 @@ "plasmid_name": "JDW 859 (pTol2-kdrl:V5-mScarlet-I-hsKRAS4A-G12V-ac/mC)", "sequence-type": "addgene-full", "addgene_id": "156416", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -468210,7 +496628,9 @@ "plasmid_name": "pENTR-p14FAST", "sequence-type": "addgene-full", "addgene_id": "50025", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25478005" + ], "kit": null, "att_sites": [ "attL1", @@ -468241,7 +496661,10 @@ "plasmid_name": "pMT mir-1-1 reporter hsa-mir-205", "sequence-type": "depositor-full", "addgene_id": "46744", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -468282,7 +496705,10 @@ "plasmid_name": "IF101: pMVP (L1-L4) EF1a promoter", "sequence-type": "addgene-full", "addgene_id": "121687", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -468315,7 +496741,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3B Q116P G120", "sequence-type": "addgene-full", "addgene_id": "129289", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attB1", @@ -468359,7 +496788,10 @@ "plasmid_name": "pDONR223_AKR1B1_p.F252L", "sequence-type": "addgene-full", "addgene_id": "82743", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -468388,7 +496820,6 @@ "plasmid_name": "psp-161-si1(sigfp)", "sequence-type": "depositor-full", "addgene_id": "58801", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -468436,7 +496867,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp10", "sequence-type": "addgene-full", "addgene_id": "168938", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -468465,7 +496899,10 @@ "plasmid_name": "pENTR-Creb5(T59/T61A)(HA)", "sequence-type": "addgene-full", "addgene_id": "195025", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "att_sites": [ "attL1", @@ -468497,7 +496934,10 @@ "plasmid_name": "PEP119T", "sequence-type": "addgene-full", "addgene_id": "98251", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00047", + "https://www.ncbi.nlm.nih.gov/pubmed/28619883" + ], "kit": null, "att_sites": [ "attR1", @@ -468538,7 +496978,10 @@ "plasmid_name": "pEN_TTmiRC2_3xflag_Luciferase", "sequence-type": "addgene-full", "addgene_id": "136519", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attL1", @@ -468568,7 +497011,10 @@ "plasmid_name": "A1-LCD+8D", "sequence-type": "addgene-full", "addgene_id": "178674", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -468604,7 +497050,10 @@ "plasmid_name": "A1-LCD Aro-", "sequence-type": "addgene-full", "addgene_id": "169715", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "att_sites": [ "attB1", @@ -468639,7 +497088,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.S33N", "sequence-type": "addgene-full", "addgene_id": "82923", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -468669,7 +497121,10 @@ "plasmid_name": "IX301: pMVP (L3-L2) myc epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121753", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -468703,7 +497158,10 @@ "plasmid_name": "pEN_TT 3xFLAG-KIF20A", "sequence-type": "addgene-full", "addgene_id": "192297", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -468732,7 +497190,6 @@ "plasmid_name": "His SUMO TEV SPOP 1-374", "sequence-type": "addgene-full", "addgene_id": "197015", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -468772,7 +497229,10 @@ "plasmid_name": "TFORF3195", "sequence-type": "addgene-full", "addgene_id": "144671", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -468833,7 +497293,10 @@ "plasmid_name": "p3E-Rab31", "sequence-type": "addgene-full", "addgene_id": "109755", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -468864,7 +497327,6 @@ "plasmid_name": "pFRT-DestFLAGHA_RNAseH1", "sequence-type": "addgene-full", "addgene_id": "65783", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -468910,7 +497372,10 @@ "plasmid_name": "pDONR221_SLC11A2", "sequence-type": "addgene-full", "addgene_id": "131884", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -468941,7 +497406,10 @@ "plasmid_name": "pAC1801_pmax-dCasRx", "sequence-type": "addgene-full", "addgene_id": "118634", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118634.addgene-full.gb" }, @@ -468950,7 +497418,10 @@ "plasmid_name": "pFLAG/HA-MOV10", "sequence-type": "addgene-full", "addgene_id": "10976", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2005.10.048", + "https://www.ncbi.nlm.nih.gov/pubmed/16289642" + ], "kit": null, "att_sites": [ "attB1", @@ -468999,7 +497470,10 @@ "plasmid_name": "pcDNA3-IKZF1-V2-V5", "sequence-type": "addgene-full", "addgene_id": "107390", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -469049,7 +497523,10 @@ "plasmid_name": "pDONR223_ZNF454_p.H462Y", "sequence-type": "addgene-full", "addgene_id": "81445", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -469081,7 +497558,10 @@ "plasmid_name": "pLX-EF1a_GFP_CdTag-HA", "sequence-type": "addgene-full", "addgene_id": "221492", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -469146,7 +497626,10 @@ "plasmid_name": "pCW-eGFP-FHA-SHLD2", "sequence-type": "addgene-full", "addgene_id": "114121", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "att_sites": [ "attB1", @@ -469204,7 +497687,10 @@ "plasmid_name": "pDONR221-SLC44A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161380", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -469235,7 +497721,10 @@ "plasmid_name": "pDONR223_PPP6C_WT", "sequence-type": "addgene-full", "addgene_id": "81811", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -469267,7 +497756,6 @@ "plasmid_name": "pDONR223 ERFlux (Bip-HaloTag7-mGFP-KDEL-STOP)", "sequence-type": "addgene-full", "addgene_id": "215002", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -469301,7 +497789,10 @@ "plasmid_name": "pcDNA3.2-Cx43-HA", "sequence-type": "addgene-full", "addgene_id": "49851", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2013.10.009", + "https://www.ncbi.nlm.nih.gov/pubmed/24210816" + ], "kit": null, "att_sites": [ "attB1", @@ -469351,7 +497842,10 @@ "plasmid_name": "pHAGE-ALK-R1275Q", "sequence-type": "addgene-full", "addgene_id": "116111", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -469401,7 +497895,10 @@ "plasmid_name": "TFORF3115", "sequence-type": "addgene-full", "addgene_id": "144591", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -469461,7 +497958,10 @@ "plasmid_name": "pMOS011: superecliptic pHluorin (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163050", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -469524,7 +498024,10 @@ "plasmid_name": "pDONR223 SCAF8_isoD_CRISPR_resistant", "sequence-type": "addgene-full", "addgene_id": "122468", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "att_sites": [ "attL1", @@ -469553,7 +498056,10 @@ "plasmid_name": "pDONR221-SLC22A16_STOP", "sequence-type": "addgene-full", "addgene_id": "161189", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -469585,7 +498091,10 @@ "plasmid_name": "pDONR223_BRAF_p.P367R", "sequence-type": "addgene-full", "addgene_id": "82851", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -469615,7 +498124,10 @@ "plasmid_name": "pMuLE ENTR U6-miR-30 L1-L4", "sequence-type": "depositor-full", "addgene_id": "62114", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -469651,7 +498163,10 @@ "plasmid_name": "TFORF3322", "sequence-type": "addgene-full", "addgene_id": "144798", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -469711,7 +498226,6 @@ "plasmid_name": "R777-E159 Hs.PDPK1", "sequence-type": "depositor-full", "addgene_id": "70443", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -469739,7 +498253,10 @@ "plasmid_name": "pLX317-VRK2-K168E", "sequence-type": "addgene-full", "addgene_id": "199642", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "att_sites": [ "attB1", @@ -469799,7 +498316,10 @@ "plasmid_name": "TFORF3002", "sequence-type": "addgene-full", "addgene_id": "144478", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -469859,7 +498379,10 @@ "plasmid_name": "Ad-SNRK", "sequence-type": "addgene-full", "addgene_id": "131539", - "references": [], + "references": [ + "https://doi.org/10.2337/db12-1081", + "https://www.ncbi.nlm.nih.gov/pubmed/23520131" + ], "kit": null, "att_sites": [ "attB1", @@ -469895,7 +498418,10 @@ "plasmid_name": "pDONR221-SLC2A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161269", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -469926,7 +498452,10 @@ "plasmid_name": "pDONR221-kcnj12a", "sequence-type": "addgene-full", "addgene_id": "173141", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -469957,7 +498486,10 @@ "plasmid_name": "BCL2L1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98323", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -470017,7 +498549,9 @@ "plasmid_name": "p5E-dr_Unc (JDW 1365)", "sequence-type": "addgene-full", "addgene_id": "224482", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL4", @@ -470049,7 +498583,10 @@ "plasmid_name": "pDONR221-ZNF705A", "sequence-type": "depositor-full", "addgene_id": "101414", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attB2", @@ -470082,7 +498619,10 @@ "plasmid_name": "pDONR223_GNA13_WT", "sequence-type": "addgene-full", "addgene_id": "81963", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -470114,7 +498654,10 @@ "plasmid_name": "pcDNA3.2/V5 hsa-mir-150", "sequence-type": "addgene-full", "addgene_id": "26310", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.1884710", + "https://www.ncbi.nlm.nih.gov/pubmed/20413612" + ], "kit": null, "att_sites": [ "attB1", @@ -470164,7 +498707,10 @@ "plasmid_name": "pHAGE-FGFR3-E360Q", "sequence-type": "addgene-full", "addgene_id": "116383", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -470218,7 +498764,10 @@ "plasmid_name": "pDEST-V1-ORF", "sequence-type": "depositor-full", "addgene_id": "73635", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaf0793", + "https://www.ncbi.nlm.nih.gov/pubmed/27405979" + ], "kit": null, "att_sites": [ "attR1", @@ -470274,7 +498823,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-Envelope", "sequence-type": "depositor-full", "addgene_id": "168904", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -470303,7 +498855,10 @@ "plasmid_name": "pDON223 Spike D138Y", "sequence-type": "addgene-full", "addgene_id": "180056", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attL1", @@ -470332,7 +498887,10 @@ "plasmid_name": "TFORF3227", "sequence-type": "addgene-full", "addgene_id": "144703", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -470392,7 +498950,10 @@ "plasmid_name": "pIE2-DBD", "sequence-type": "depositor-full", "addgene_id": "21602", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ab.2009.05.033", + "https://www.ncbi.nlm.nih.gov/pubmed/19481053" + ], "kit": null, "att_sites": [ "attR1", @@ -470424,7 +498985,10 @@ "plasmid_name": "pDONR223_STAT6_p.D46N", "sequence-type": "addgene-full", "addgene_id": "81537", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -470456,7 +499020,10 @@ "plasmid_name": "pDONR221-SLC16A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161112", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -470488,7 +499055,10 @@ "plasmid_name": "pAG424-ccdB", "sequence-type": "depositor-full", "addgene_id": "70124", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.061788.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29212664" + ], "kit": null, "att_sites": [ "attR1", @@ -470543,7 +499113,10 @@ "plasmid_name": "TFORF3061", "sequence-type": "addgene-full", "addgene_id": "144537", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -470603,7 +499176,10 @@ "plasmid_name": "PB-TAC-WTSI", "sequence-type": "depositor-full", "addgene_id": "80486", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "file": "data/addgene_plasmids/80486.depositor-full.gb" }, @@ -470612,7 +499188,10 @@ "plasmid_name": "pEN_TTmiRc2_BirA_NRF2", "sequence-type": "addgene-full", "addgene_id": "136524", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attL1", @@ -470641,7 +499220,10 @@ "plasmid_name": "pcDNA6.2EmGFP-cDAXX-0SB", "sequence-type": "addgene-full", "addgene_id": "169728", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "att_sites": [ "attB1", @@ -470693,7 +499275,10 @@ "plasmid_name": "pDONR221-SLC6A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161326", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -470724,7 +499309,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.P124S", "sequence-type": "addgene-full", "addgene_id": "81703", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -470756,7 +499344,10 @@ "plasmid_name": "pKOR1", "sequence-type": "addgene-full", "addgene_id": "133446", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2005.05.005", + "https://www.ncbi.nlm.nih.gov/pubmed/16051359" + ], "kit": null, "att_sites": [ "attP1", @@ -470798,7 +499389,10 @@ "plasmid_name": "343 pTol2-fli1epDest", "sequence-type": "depositor-full", "addgene_id": "73486", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -470845,7 +499439,9 @@ "plasmid_name": "pFLIP39", "sequence-type": "depositor-full", "addgene_id": "65507", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "att_sites": [ "attR1", @@ -470883,7 +499479,10 @@ "plasmid_name": "pENTR223-EBNA3B", "sequence-type": "addgene-full", "addgene_id": "198574", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -470912,7 +499511,10 @@ "plasmid_name": "pDONR223-ZNF277", "sequence-type": "addgene-full", "addgene_id": "88174", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -470942,7 +499544,10 @@ "plasmid_name": "TFORF3487", "sequence-type": "addgene-full", "addgene_id": "144963", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -471002,7 +499607,9 @@ "plasmid_name": "pDONR221-PABPN1(v1)", "sequence-type": "addgene-full", "addgene_id": "166194", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -471033,7 +499640,6 @@ "plasmid_name": "R777-E113 Hs.JUN", "sequence-type": "depositor-full", "addgene_id": "70397", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -471062,7 +499668,10 @@ "plasmid_name": "pExp_CAG:EBFP2", "sequence-type": "depositor-full", "addgene_id": "51790", - "references": [], + "references": [ + "https://doi.org/10.1021/sb500263b", + "https://www.ncbi.nlm.nih.gov/pubmed/25369267" + ], "kit": null, "att_sites": [ "attB1", @@ -471111,7 +499720,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP9_stop", "sequence-type": "addgene-full", "addgene_id": "168551", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -471140,7 +499752,10 @@ "plasmid_name": "RBM38", "sequence-type": "addgene-full", "addgene_id": "155899", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -471183,7 +499798,10 @@ "plasmid_name": "p5E-gfap", "sequence-type": "depositor-full", "addgene_id": "75024", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -471195,7 +499813,10 @@ "plasmid_name": "pLKO.DEST.YFP", "sequence-type": "depositor-full", "addgene_id": "32683", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "att_sites": [ "attR1", @@ -471250,7 +499871,10 @@ "plasmid_name": "pDONR223_SLC2A3_p.G109V", "sequence-type": "addgene-full", "addgene_id": "81478", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -471282,7 +499906,10 @@ "plasmid_name": "pAG414GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14143", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -471342,7 +499969,10 @@ "plasmid_name": "pCR8_TtNAM-B1(1-215)", "sequence-type": "addgene-full", "addgene_id": "124577", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "att_sites": [ "attL1", @@ -471371,7 +500001,10 @@ "plasmid_name": "JI501: pMAGIC (L3-L2) 3x HA epitope tag + polyA; hU6::SaCas9 gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121841", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -471408,7 +500041,10 @@ "plasmid_name": "pDONR223_NFIL3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82985", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -471437,7 +500073,6 @@ "plasmid_name": "pENTR ARRET", "sequence-type": "depositor-full", "addgene_id": "111384", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -471468,7 +500103,10 @@ "plasmid_name": "pDONR223_STK11_WT", "sequence-type": "addgene-full", "addgene_id": "81798", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -471497,7 +500135,10 @@ "plasmid_name": "actc1b-mKate2-CaaX(tK)", "sequence-type": "addgene-full", "addgene_id": "109488", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -471537,7 +500178,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF3B_nostop", "sequence-type": "addgene-full", "addgene_id": "149320", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -471566,7 +500210,10 @@ "plasmid_name": "phGf", "sequence-type": "depositor-full", "addgene_id": "22516", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "att_sites": [ "attR1", @@ -471605,7 +500252,10 @@ "plasmid_name": "pMXs-OLIG2", "sequence-type": "addgene-full", "addgene_id": "134668", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199723", + "https://www.ncbi.nlm.nih.gov/pubmed/35748297" + ], "kit": null, "att_sites": [ "attB1", @@ -471633,7 +500283,10 @@ "plasmid_name": "pUBQ10:LYK5_At-3xHA", "sequence-type": "addgene-full", "addgene_id": "202192", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "att_sites": [ "attB1", @@ -471679,7 +500332,10 @@ "plasmid_name": "p16 nlsGPS1", "sequence-type": "addgene-full", "addgene_id": "101081", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-017-0021-9", + "https://www.ncbi.nlm.nih.gov/pubmed/28970478" + ], "kit": null, "att_sites": [ "attB1", @@ -471727,7 +500383,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF9B_nostop", "sequence-type": "addgene-full", "addgene_id": "149327", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -471756,7 +500415,10 @@ "plasmid_name": "pME-APEX2-mCherry", "sequence-type": "addgene-full", "addgene_id": "188944", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64835", + "https://www.ncbi.nlm.nih.gov/pubmed/35943143" + ], "kit": null, "att_sites": [ "attL1", @@ -471796,7 +500458,6 @@ "plasmid_name": "pBABEpuro-CRAF_S257W", "sequence-type": "depositor-full", "addgene_id": "51126", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -471827,7 +500488,6 @@ "plasmid_name": "R777-E237 Hs.RASAL3", "sequence-type": "depositor-full", "addgene_id": "70521", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -471855,7 +500515,10 @@ "plasmid_name": "pAG416GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14292", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -471916,7 +500579,10 @@ "plasmid_name": "Lenti-2XPRE-GFP", "sequence-type": "addgene-full", "addgene_id": "206169", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "att_sites": [ "attB1", @@ -471978,7 +500644,10 @@ "plasmid_name": "pCellFree_G04", "sequence-type": "depositor-full", "addgene_id": "67138", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "att_sites": [ "attR1", @@ -472019,7 +500688,10 @@ "plasmid_name": "pLX_HA-C7orf26v1", "sequence-type": "addgene-full", "addgene_id": "178535", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.12.005", + "https://www.ncbi.nlm.nih.gov/pubmed/35085500" + ], "kit": null, "att_sites": [ "attB1", @@ -472079,7 +500751,10 @@ "plasmid_name": "JH401: pMVP/Ad/RGD-PK-DEST", "sequence-type": "addgene-full", "addgene_id": "121846", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -472111,7 +500786,10 @@ "plasmid_name": "pPN459", "sequence-type": "addgene-full", "addgene_id": "137875", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "att_sites": [ "attB1", @@ -472166,7 +500844,10 @@ "plasmid_name": "pEN_TT 3XFLAG-S37A-GATA6-3XAU1", "sequence-type": "addgene-full", "addgene_id": "72613", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "att_sites": [ "attL1", @@ -472190,7 +500871,9 @@ "plasmid_name": "pDONR221-NOP58", "sequence-type": "addgene-full", "addgene_id": "166193", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166193.addgene-full.gb" }, @@ -472199,7 +500882,10 @@ "plasmid_name": "TFORF3488", "sequence-type": "addgene-full", "addgene_id": "144964", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -472259,7 +500945,10 @@ "plasmid_name": "PABPC1", "sequence-type": "addgene-full", "addgene_id": "155805", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -472302,7 +500991,10 @@ "plasmid_name": "pSAM2_mCherry_Tbx5", "sequence-type": "addgene-full", "addgene_id": "72688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -472364,7 +501056,10 @@ "plasmid_name": "pHAGE-N-FLAG-HA-TBK1", "sequence-type": "addgene-full", "addgene_id": "131791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.08.085", + "https://www.ncbi.nlm.nih.gov/pubmed/31577952" + ], "kit": null, "att_sites": [ "attB1", @@ -472416,7 +501111,10 @@ "plasmid_name": "pHAGE-EGFR-G588S", "sequence-type": "addgene-full", "addgene_id": "116250", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -472466,7 +501164,10 @@ "plasmid_name": "p6993 MSCV-Neo C-HA 18E7", "sequence-type": "addgene-full", "addgene_id": "163311", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "att_sites": [ "attB1", @@ -472511,7 +501212,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP15_stop", "sequence-type": "addgene-full", "addgene_id": "168556", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -472540,7 +501244,10 @@ "plasmid_name": "LC601: pMVP (L3-L2) eYFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121769", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -472577,7 +501284,10 @@ "plasmid_name": "pDONR223_ZNF597_p.R247T", "sequence-type": "addgene-full", "addgene_id": "82919", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -472606,7 +501316,9 @@ "plasmid_name": "pGWB402SN", "sequence-type": "addgene-full", "addgene_id": "224551", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.14.603419" + ], "kit": null, "att_sites": [ "attR1", @@ -472649,7 +501361,10 @@ "plasmid_name": "pEN_TTmiRc2_BirA_CDKN1A", "sequence-type": "addgene-full", "addgene_id": "136523", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attL1", @@ -472679,7 +501394,10 @@ "plasmid_name": "pCMU-PLAr", "sequence-type": "depositor-full", "addgene_id": "61200", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -472724,7 +501442,10 @@ "plasmid_name": "pDONR221-SLC44A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161321", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -472755,7 +501476,10 @@ "plasmid_name": "pDONR223_IDH1_p.E190K", "sequence-type": "addgene-full", "addgene_id": "81704", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -472787,7 +501511,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp1", "sequence-type": "depositor-full", "addgene_id": "168866", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -472816,7 +501543,10 @@ "plasmid_name": "TFORF3054", "sequence-type": "addgene-full", "addgene_id": "144530", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -472876,7 +501606,10 @@ "plasmid_name": "pcw107", "sequence-type": "depositor-full", "addgene_id": "62511", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attR1", @@ -472939,7 +501672,10 @@ "plasmid_name": "pDONR223_KEAP1_p.G524C", "sequence-type": "addgene-full", "addgene_id": "82779", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82779.addgene-full.gb" }, @@ -472948,7 +501684,10 @@ "plasmid_name": "pDONR221-SLCO2A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161115", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -472979,7 +501718,10 @@ "plasmid_name": "pcDNA3.2/V5 hsa-mir-9-1", "sequence-type": "addgene-full", "addgene_id": "26317", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.1884710", + "https://www.ncbi.nlm.nih.gov/pubmed/20413612" + ], "kit": null, "att_sites": [ "attB1", @@ -473029,7 +501771,10 @@ "plasmid_name": "pHAGE-FGFR3-R124W", "sequence-type": "addgene-full", "addgene_id": "116384", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -473083,7 +501828,10 @@ "plasmid_name": "TFORF3228", "sequence-type": "addgene-full", "addgene_id": "144704", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -473143,7 +501891,10 @@ "plasmid_name": "actc1b-mKate2-rab30", "sequence-type": "addgene-full", "addgene_id": "109620", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -473185,7 +501936,6 @@ "plasmid_name": "pAM-35s-CIPK5-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102387", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -473218,7 +501968,10 @@ "plasmid_name": "pDONR221-WT-short-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "192099", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "att_sites": [ "attL1", @@ -473249,7 +502002,10 @@ "plasmid_name": "pGMCtKq28-TSC10M1-sspB", "sequence-type": "depositor-full", "addgene_id": "49526", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "att_sites": [ "attB1", @@ -473281,7 +502037,9 @@ "plasmid_name": "pME AmCyan (JDW 1151)", "sequence-type": "addgene-full", "addgene_id": "224485", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -473314,7 +502072,10 @@ "plasmid_name": "pDONR223_STAG2_WT", "sequence-type": "addgene-full", "addgene_id": "81964", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -473346,7 +502107,9 @@ "plasmid_name": "pLentiN HPV8 E6 K142A", "sequence-type": "addgene-full", "addgene_id": "87680", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28107544" + ], "kit": null, "att_sites": [ "attB1", @@ -473408,7 +502171,10 @@ "plasmid_name": "pENTR-D-kcnj16", "sequence-type": "addgene-full", "addgene_id": "173146", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -473439,7 +502205,10 @@ "plasmid_name": "CDK9_pLX307", "sequence-type": "addgene-full", "addgene_id": "98324", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -473499,7 +502268,9 @@ "plasmid_name": "pDRf1-4CL5-AtSDT (JBEI-11535)", "sequence-type": "addgene-full", "addgene_id": "87934", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27871334" + ], "kit": null, "att_sites": [ "attB1", @@ -473543,7 +502314,6 @@ "plasmid_name": "p667-UBC-ADCK5-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189909", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -473608,7 +502378,10 @@ "plasmid_name": "pDONR-TIR1", "sequence-type": "depositor-full", "addgene_id": "83875", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -473639,7 +502412,9 @@ "plasmid_name": "p3E-YFP-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82590", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -473675,7 +502450,10 @@ "plasmid_name": "pEntry_MERS-CoV-ORF4a", "sequence-type": "depositor-full", "addgene_id": "168828", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -473704,7 +502482,10 @@ "plasmid_name": "pStart-T2", "sequence-type": "addgene-full", "addgene_id": "20347", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "att_sites": [ "attL1", @@ -473731,7 +502512,10 @@ "plasmid_name": "p3E-APEX2-P2A-EGFP", "sequence-type": "addgene-full", "addgene_id": "108896", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "att_sites": [ "attB2", @@ -473768,7 +502552,10 @@ "plasmid_name": "pEBTetBl-CLIP-HsSAS6", "sequence-type": "addgene-full", "addgene_id": "136838", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -473813,7 +502600,10 @@ "plasmid_name": "pDONR223_TERT_p.L593F", "sequence-type": "addgene-full", "addgene_id": "82856", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -473843,7 +502633,10 @@ "plasmid_name": "pMpGE006", "sequence-type": "addgene-full", "addgene_id": "108722", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0205117", + "https://www.ncbi.nlm.nih.gov/pubmed/30379827" + ], "kit": null, "att_sites": [ "attB1", @@ -473887,7 +502680,10 @@ "plasmid_name": "pGC160", "sequence-type": "depositor-full", "addgene_id": "19632", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -473928,7 +502724,10 @@ "plasmid_name": "pHAGE-AXL-C311F", "sequence-type": "addgene-full", "addgene_id": "116116", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -473977,7 +502776,10 @@ "plasmid_name": "pAG304GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14376", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -474035,7 +502837,10 @@ "plasmid_name": "TFORF3120", "sequence-type": "addgene-full", "addgene_id": "144596", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -474095,7 +502900,10 @@ "plasmid_name": "pMOS012: Grx1-roGFP1-iE_ER glutathione redox sensor (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163057", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -474159,7 +502967,10 @@ "plasmid_name": "p3E_GGWDest-", "sequence-type": "depositor-full", "addgene_id": "49316", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -474195,7 +503006,10 @@ "plasmid_name": "pDONR223_GPS2_WT", "sequence-type": "addgene-full", "addgene_id": "81816", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -474227,7 +503041,10 @@ "plasmid_name": "pDONR221-SLC7A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161387", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -474258,7 +503075,10 @@ "plasmid_name": "pLX307/PTPN11 T73I", "sequence-type": "addgene-full", "addgene_id": "140939", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0209", + "https://www.ncbi.nlm.nih.gov/pubmed/31771968" + ], "kit": null, "att_sites": [ "attB1", @@ -474318,7 +503138,10 @@ "plasmid_name": "pDONR221-SLC1A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161067", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -474349,7 +503172,10 @@ "plasmid_name": "pDONR223_COPS2_p.G68R", "sequence-type": "addgene-full", "addgene_id": "81442", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -474381,7 +503207,10 @@ "plasmid_name": "pCW-eGFP-SHLD3", "sequence-type": "addgene-full", "addgene_id": "114126", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "att_sites": [ "attB1", @@ -474440,7 +503269,10 @@ "plasmid_name": "TFORF3200", "sequence-type": "addgene-full", "addgene_id": "144676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -474501,7 +503333,10 @@ "plasmid_name": "pDONR221-SLC31A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161290", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -474532,7 +503367,10 @@ "plasmid_name": "pDONR221_RHBG", "sequence-type": "addgene-full", "addgene_id": "131883", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -474563,7 +503401,10 @@ "plasmid_name": "pBBR4pemIK-GW", "sequence-type": "addgene-full", "addgene_id": "126929", - "references": [], + "references": [ + "https://doi.org/10.1128/MRA.00769-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31488530" + ], "kit": null, "att_sites": [ "attR1", @@ -474606,7 +503447,10 @@ "plasmid_name": "pcDNA3-FLAG- gate-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107397", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attR1", @@ -474654,7 +503498,6 @@ "plasmid_name": "R777-E354 Hs.TSC1-nostop", "sequence-type": "depositor-full", "addgene_id": "70638", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -474682,7 +503525,10 @@ "plasmid_name": "pBi2FC-N-MPK6-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216137", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attB1", @@ -474732,7 +503578,10 @@ "plasmid_name": "PPIB", "sequence-type": "addgene-full", "addgene_id": "155838", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -474775,7 +503624,10 @@ "plasmid_name": "pDONR223_GOPC_WT", "sequence-type": "addgene-full", "addgene_id": "82924", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -474804,7 +503656,10 @@ "plasmid_name": "pDONR221-FOXD4L5", "sequence-type": "depositor-full", "addgene_id": "101492", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -474835,7 +503690,10 @@ "plasmid_name": "IX401: pMVP (L3-L2) 6x His epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121754", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -474869,7 +503727,10 @@ "plasmid_name": "pDONR223_RHOA_WT", "sequence-type": "addgene-full", "addgene_id": "81739", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -474902,7 +503763,10 @@ "plasmid_name": "pENTR-Creb5(HA)", "sequence-type": "addgene-full", "addgene_id": "195022", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "att_sites": [ "attL1", @@ -474934,7 +503798,10 @@ "plasmid_name": "A1-LCD+4D", "sequence-type": "addgene-full", "addgene_id": "178673", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -474969,7 +503836,10 @@ "plasmid_name": "p{Mhc-F4-678-DsRed::KD,attB}", "sequence-type": "addgene-full", "addgene_id": "182188", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -475009,7 +503879,10 @@ "plasmid_name": "Ash1-5p", "sequence-type": "addgene-full", "addgene_id": "169712", - "references": [], + "references": [ + "https://doi.org/10.1021/jacs.6b10272", + "https://www.ncbi.nlm.nih.gov/pubmed/27807972" + ], "kit": null, "att_sites": [ "attB1", @@ -475044,7 +503917,10 @@ "plasmid_name": "pLEX307-Bat-CoV-HKU9-3CL-C144A", "sequence-type": "addgene-full", "addgene_id": "160285", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "att_sites": [ "attB1", @@ -475104,7 +503980,10 @@ "plasmid_name": "pCFJ353 - MCS(ttTi4391, I)", "sequence-type": "depositor-full", "addgene_id": "34869", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attB1", @@ -475137,7 +504016,10 @@ "plasmid_name": "LIIc F 4-5", "sequence-type": "depositor-full", "addgene_id": "54371", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "att_sites": [ "attR1", @@ -475169,7 +504051,10 @@ "plasmid_name": "pTKan-p35S::Csy4-pNOS::cogRFP (C134, JBEI-15901)", "sequence-type": "addgene-full", "addgene_id": "110146", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.6b00295", + "https://www.ncbi.nlm.nih.gov/pubmed/28094975" + ], "kit": null, "att_sites": [ "attB1", @@ -475225,7 +504110,10 @@ "plasmid_name": "pGWB426", "sequence-type": "depositor-full", "addgene_id": "74820", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -475275,7 +504163,10 @@ "plasmid_name": "pDONR221-SLC1A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161128", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -475306,7 +504197,10 @@ "plasmid_name": "pAG415GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14338", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -475367,7 +504261,10 @@ "plasmid_name": "MLKS2ec", "sequence-type": "addgene-full", "addgene_id": "130855", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "att_sites": [ "attL1", @@ -475401,7 +504298,10 @@ "plasmid_name": "pDONR223_STC2_p.R5W", "sequence-type": "addgene-full", "addgene_id": "82744", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -475430,7 +504330,10 @@ "plasmid_name": "pEF-ENTR C (709-1)", "sequence-type": "depositor-full", "addgene_id": "17429", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -475461,7 +504364,10 @@ "plasmid_name": "JDW 836 (pCS2-V5-mScarlet-I-hsKRAS4A-WT)", "sequence-type": "addgene-full", "addgene_id": "156411", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -475505,7 +504411,10 @@ "plasmid_name": "p3EHA", "sequence-type": "depositor-full", "addgene_id": "67708", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "att_sites": [ "attL3", @@ -475537,7 +504446,10 @@ "plasmid_name": "TFORF3263", "sequence-type": "addgene-full", "addgene_id": "144739", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -475597,7 +504509,9 @@ "plasmid_name": "pLV-SV40p-gI-BlastR", "sequence-type": "addgene-full", "addgene_id": "207182", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "att_sites": [ "attR1", @@ -475649,7 +504563,10 @@ "plasmid_name": "pDONR221-ZNF587B", "sequence-type": "depositor-full", "addgene_id": "101621", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -475680,7 +504597,6 @@ "plasmid_name": "R777-E027 Hs.CNKSR1", "sequence-type": "depositor-full", "addgene_id": "70311", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -475708,7 +504624,10 @@ "plasmid_name": "pEXP(FLAG/HA-NSP1-K164-H165A)", "sequence-type": "addgene-full", "addgene_id": "188782", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0297262", + "https://www.ncbi.nlm.nih.gov/pubmed/38277395" + ], "kit": null, "att_sites": [ "attB1", @@ -475753,7 +504672,10 @@ "plasmid_name": "pFRT/FLAG/HA MOV10 K530A", "sequence-type": "depositor-full", "addgene_id": "51716", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.03.017", + "https://www.ncbi.nlm.nih.gov/pubmed/24726324" + ], "kit": null, "att_sites": [ "attB1", @@ -475800,7 +504722,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND R394E + S297A", "sequence-type": "addgene-full", "addgene_id": "169972", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -475831,7 +504756,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF7A", "sequence-type": "addgene-full", "addgene_id": "154421", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -475861,7 +504789,10 @@ "plasmid_name": "pDEST-FRT/T0-GFP-PALB2", "sequence-type": "depositor-full", "addgene_id": "71113", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "att_sites": [ "attB1", @@ -475907,7 +504838,10 @@ "plasmid_name": "pME-mScarlet-STOP", "sequence-type": "addgene-full", "addgene_id": "140876", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -475939,7 +504873,6 @@ "plasmid_name": "pCLX-KRT7-GFP", "sequence-type": "addgene-full", "addgene_id": "114312", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -475992,7 +504925,10 @@ "plasmid_name": "pDONR223_IDH1_p.P33S", "sequence-type": "addgene-full", "addgene_id": "81676", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -476024,7 +504960,10 @@ "plasmid_name": "5'-3xFLAG Chtop+exon_siResist minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212083", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -476064,7 +505003,10 @@ "plasmid_name": "pENTR1A-TAZ S89A", "sequence-type": "addgene-full", "addgene_id": "179911", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jhep.2021.08.021", + "https://www.ncbi.nlm.nih.gov/pubmed/34464659" + ], "kit": null, "att_sites": [ "attL1", @@ -476089,7 +505031,10 @@ "plasmid_name": "DDX5", "sequence-type": "addgene-full", "addgene_id": "155523", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -476132,7 +505077,10 @@ "plasmid_name": "35S-GWY-VP16/pAM", "sequence-type": "addgene-full", "addgene_id": "201232", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16234", + "https://www.ncbi.nlm.nih.gov/pubmed/37323061" + ], "kit": null, "att_sites": [ "attR1", @@ -476170,7 +505118,10 @@ "plasmid_name": "p3E-EHD1b", "sequence-type": "addgene-full", "addgene_id": "109566", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -476201,7 +505152,10 @@ "plasmid_name": "TFORF2966", "sequence-type": "addgene-full", "addgene_id": "144442", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -476261,7 +505215,6 @@ "plasmid_name": "pLenti6.3/NS2A", "sequence-type": "addgene-full", "addgene_id": "120836", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -476320,7 +505273,10 @@ "plasmid_name": "p3E-rab28", "sequence-type": "addgene-full", "addgene_id": "109686", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -476351,7 +505307,10 @@ "plasmid_name": "pDONR221_SLC14A1", "sequence-type": "addgene-full", "addgene_id": "131957", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -476382,7 +505341,10 @@ "plasmid_name": "pQLinkHD_EBFP2", "sequence-type": "addgene-full", "addgene_id": "118853", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "att_sites": [ "attB1", @@ -476420,7 +505382,10 @@ "plasmid_name": "TFORF3340", "sequence-type": "addgene-full", "addgene_id": "144816", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -476480,7 +505445,6 @@ "plasmid_name": "pSCM167-Venus-VF-hADAM10(aa220-654)", "sequence-type": "addgene-full", "addgene_id": "189560", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -476536,7 +505500,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-mir-279", "sequence-type": "depositor-full", "addgene_id": "46668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -476586,7 +505553,10 @@ "plasmid_name": "pDONR223_RB1_p.L550I", "sequence-type": "addgene-full", "addgene_id": "81596", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -476618,7 +505588,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep290", "sequence-type": "addgene-full", "addgene_id": "136805", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136805.addgene-full.gb" }, @@ -476627,7 +505600,10 @@ "plasmid_name": "pDONR221-TUSC3_STOP", "sequence-type": "depositor-full", "addgene_id": "161470", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -476658,7 +505634,10 @@ "plasmid_name": "pCFJ2306 - [1-2] ENTR - Fluor - ceGFP(1 intron, syntrons(3), NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159848", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -476691,7 +505670,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF9c", "sequence-type": "addgene-full", "addgene_id": "169397", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -476734,7 +505712,10 @@ "plasmid_name": "pDONR221-SFXN4", "sequence-type": "addgene-full", "addgene_id": "132280", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -476765,7 +505746,10 @@ "plasmid_name": "pHAGE-PIK3CA-L456Afs*13", "sequence-type": "addgene-full", "addgene_id": "116508", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -476819,7 +505803,10 @@ "plasmid_name": "ZCCHC6", "sequence-type": "addgene-full", "addgene_id": "156140", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -476862,7 +505849,9 @@ "plasmid_name": "Shim_ProRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202651", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "att_sites": [ "attB1", @@ -476901,7 +505890,10 @@ "plasmid_name": "pARS3_MUbCAS9_GW", "sequence-type": "addgene-full", "addgene_id": "128646", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.174870", + "https://www.ncbi.nlm.nih.gov/pubmed/31160418" + ], "kit": null, "att_sites": [ "attB1", @@ -476945,7 +505937,10 @@ "plasmid_name": "pDONR221_SLC6A3", "sequence-type": "addgene-full", "addgene_id": "132160", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-79218-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33446713" + ], "kit": null, "att_sites": [ "attL1", @@ -476976,7 +505971,10 @@ "plasmid_name": "Flag-HA-STAMBP", "sequence-type": "addgene-full", "addgene_id": "22560", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22560.addgene-full.gb" }, @@ -476985,7 +505983,10 @@ "plasmid_name": "pLenti PGK mKate2-OGT WT (Puro)", "sequence-type": "addgene-full", "addgene_id": "154290", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "att_sites": [ "attB1", @@ -477047,7 +506048,10 @@ "plasmid_name": "pXL-BacII-CAG-Venus", "sequence-type": "addgene-full", "addgene_id": "170518", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.4105", + "https://www.ncbi.nlm.nih.gov/pubmed/34458399" + ], "kit": null, "att_sites": [ "attB1", @@ -477095,7 +506099,10 @@ "plasmid_name": "pENTR D-TOPO-C3_13", "sequence-type": "depositor-full", "addgene_id": "60261", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -477126,7 +506133,10 @@ "plasmid_name": "pCW57.1 KBTBD4 R313PRR", "sequence-type": "addgene-full", "addgene_id": "184626", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-022-00983-4", + "https://www.ncbi.nlm.nih.gov/pubmed/35379950" + ], "kit": null, "att_sites": [ "attB1", @@ -477181,7 +506191,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0537-luc2", "sequence-type": "addgene-full", "addgene_id": "214662", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -477226,7 +506239,10 @@ "plasmid_name": "pDONR223_LYN_WT", "sequence-type": "addgene-full", "addgene_id": "82215", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -477255,7 +506271,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MARK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170583", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -477321,7 +506336,10 @@ "plasmid_name": "pHAGE-RHOA-Y42C", "sequence-type": "addgene-full", "addgene_id": "116673", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -477372,7 +506390,10 @@ "plasmid_name": "pDONR223-MAPK6", "sequence-type": "addgene-full", "addgene_id": "23836", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -477404,7 +506425,10 @@ "plasmid_name": "pHAGE-PIK3R1-G644S", "sequence-type": "addgene-full", "addgene_id": "116593", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -477455,7 +506479,10 @@ "plasmid_name": "pDONR223-PBK", "sequence-type": "addgene-full", "addgene_id": "23782", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -477487,7 +506514,10 @@ "plasmid_name": "pDONR223_CDK4_p.A23S", "sequence-type": "addgene-full", "addgene_id": "81327", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -477519,7 +506549,6 @@ "plasmid_name": "IDG_KCNH8_OE_1", "sequence-type": "addgene-full", "addgene_id": "161702", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -477578,7 +506607,10 @@ "plasmid_name": "pGL198", "sequence-type": "addgene-full", "addgene_id": "180472", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13754", + "https://www.ncbi.nlm.nih.gov/pubmed/34837319" + ], "kit": null, "att_sites": [ "attL3", @@ -477613,7 +506645,10 @@ "plasmid_name": "pHAGE-DDR1__PAK1", "sequence-type": "addgene-full", "addgene_id": "116813", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -477665,7 +506700,10 @@ "plasmid_name": "pCPP5618", "sequence-type": "addgene-full", "addgene_id": "128709", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -477696,7 +506734,10 @@ "plasmid_name": "pENTR-L1-SYN-R5", "sequence-type": "depositor-full", "addgene_id": "32582", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL1", @@ -477727,7 +506768,9 @@ "plasmid_name": "pENTR CMVie-Lifeact-EGFP L1-R5", "sequence-type": "addgene-full", "addgene_id": "84391", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "att_sites": [ "attL1", @@ -477767,7 +506810,10 @@ "plasmid_name": "pAG415GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14242", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -477825,7 +506871,6 @@ "plasmid_name": "pgLAP5", "sequence-type": "depositor-full", "addgene_id": "19706", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -477879,7 +506924,10 @@ "plasmid_name": "R989-X05-636: His6-MBP-tev-G-Hs.KRAS4b(1-188)", "sequence-type": "addgene-full", "addgene_id": "159553", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -477920,7 +506968,6 @@ "plasmid_name": "pDEST26-hTLR3-Nluc", "sequence-type": "addgene-full", "addgene_id": "197638", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -477971,7 +507018,10 @@ "plasmid_name": "pDONR221 Ub-NLRP1 S1213 P1214R", "sequence-type": "addgene-full", "addgene_id": "166830", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -478003,7 +507053,10 @@ "plasmid_name": "pDEST-CMV mCherry-GFP-LC3B G120A", "sequence-type": "addgene-full", "addgene_id": "123235", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -478060,7 +507113,10 @@ "plasmid_name": "pCAG/ATP11C-c-HA", "sequence-type": "addgene-full", "addgene_id": "209222", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258523", + "https://www.ncbi.nlm.nih.gov/pubmed/34528675" + ], "kit": null, "att_sites": [ "attB1", @@ -478106,7 +507162,10 @@ "plasmid_name": "pLenti CMV TRE3G Puro FLAG-DD-ER-mCherry-TRF1-FokI D450A", "sequence-type": "addgene-full", "addgene_id": "207953", - "references": [], + "references": [ + "https://doi.org/10.1038/nature20099", + "https://www.ncbi.nlm.nih.gov/pubmed/27760120" + ], "kit": null, "att_sites": [ "attB1", @@ -478174,7 +507233,6 @@ "plasmid_name": "p663-UBC-MTS-miniTurbo-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214456", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -478238,7 +507296,10 @@ "plasmid_name": "pDONR223_RHOA_p.G62E", "sequence-type": "addgene-full", "addgene_id": "81268", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -478271,7 +507332,10 @@ "plasmid_name": "pRU319", "sequence-type": "addgene-full", "addgene_id": "167686", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -478317,7 +507381,9 @@ "plasmid_name": "HuEV-A", "sequence-type": "depositor-full", "addgene_id": "68342", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27528826" + ], "kit": null, "file": "data/addgene_plasmids/68342.depositor-full.gb" }, @@ -478326,7 +507392,10 @@ "plasmid_name": "pMartini Gate B R1-R2", "sequence-type": "depositor-full", "addgene_id": "36433", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "att_sites": [ "attR1", @@ -478365,7 +507434,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-3", "sequence-type": "depositor-full", "addgene_id": "46712", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -478415,7 +507487,10 @@ "plasmid_name": "pcdna3 flag - ULK1 wt", "sequence-type": "addgene-full", "addgene_id": "27636", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1196371", + "https://www.ncbi.nlm.nih.gov/pubmed/21205641" + ], "kit": null, "att_sites": [ "attB1", @@ -478468,7 +507543,10 @@ "plasmid_name": "pDONR221-SLC25A33_STOP", "sequence-type": "depositor-full", "addgene_id": "161159", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -478499,7 +507577,10 @@ "plasmid_name": "pREP", "sequence-type": "depositor-full", "addgene_id": "51491", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attB1", @@ -478541,7 +507622,10 @@ "plasmid_name": "pEZYmyc-His", "sequence-type": "addgene-full", "addgene_id": "18701", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "att_sites": [ "attR1", @@ -478597,7 +507681,6 @@ "plasmid_name": "pLEX307-DPP4-puro", "sequence-type": "addgene-full", "addgene_id": "158451", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -478657,7 +507740,10 @@ "plasmid_name": "pDONR223_TP53_p.C275S", "sequence-type": "addgene-full", "addgene_id": "81381", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -478690,7 +507776,10 @@ "plasmid_name": "pHAGE-PIK3CA-R38C", "sequence-type": "addgene-full", "addgene_id": "116535", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -478744,7 +507833,10 @@ "plasmid_name": "pDEST-DHFR F[1,2]-N (TRP1)", "sequence-type": "addgene-full", "addgene_id": "177797", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac045", + "https://www.ncbi.nlm.nih.gov/pubmed/35137167" + ], "kit": null, "att_sites": [ "attR1", @@ -478786,7 +507878,10 @@ "plasmid_name": "pDONR223-LCK", "sequence-type": "addgene-full", "addgene_id": "23890", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -478818,7 +507913,10 @@ "plasmid_name": "pLenti GW-mCit-PA", "sequence-type": "addgene-full", "addgene_id": "113457", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113457.addgene-full.gb" }, @@ -478827,7 +507925,9 @@ "plasmid_name": "p49202-DEST", "sequence-type": "addgene-full", "addgene_id": "90100", - "references": [], + "references": [ + "https://doi.org/10.7287/peerj.preprints.2907v1" + ], "kit": null, "att_sites": [ "attR1", @@ -478869,7 +507969,10 @@ "plasmid_name": "pDONR201-Eps8L2_529-715", "sequence-type": "addgene-full", "addgene_id": "196533", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attL1", @@ -478892,7 +507995,10 @@ "plasmid_name": "pDONR223_PRKCZ_WT", "sequence-type": "addgene-full", "addgene_id": "82228", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -478921,7 +508027,10 @@ "plasmid_name": "pCMU-TLEr", "sequence-type": "depositor-full", "addgene_id": "61187", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -478967,7 +508076,10 @@ "plasmid_name": "pDONR221-ANKH_STOP", "sequence-type": "addgene-full", "addgene_id": "161444", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -478998,7 +508110,10 @@ "plasmid_name": "C413-E22: attB4-polyhedrinp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162922", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -479032,7 +508147,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 1-500)", "sequence-type": "addgene-full", "addgene_id": "119312", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -479084,7 +508202,10 @@ "plasmid_name": "pDL6", "sequence-type": "addgene-full", "addgene_id": "175888", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -479115,7 +508236,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS4B", "sequence-type": "addgene-full", "addgene_id": "145357", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -479150,7 +508274,10 @@ "plasmid_name": "pKH116_keima-YIPF3", "sequence-type": "addgene-full", "addgene_id": "214970", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "att_sites": [ "attB1", @@ -479201,7 +508328,10 @@ "plasmid_name": "pPB-cT3G-cERP2-JUNB", "sequence-type": "addgene-full", "addgene_id": "192907", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -479247,7 +508377,10 @@ "plasmid_name": "pTO_CHMP4B_LAP", "sequence-type": "addgene-full", "addgene_id": "101850", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3559", + "https://www.ncbi.nlm.nih.gov/pubmed/28604678" + ], "kit": null, "file": "data/addgene_plasmids/101850.addgene-full.gb" }, @@ -479256,7 +508389,9 @@ "plasmid_name": "pMpGWB118", "sequence-type": "depositor-full", "addgene_id": "68572", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -479302,7 +508437,10 @@ "plasmid_name": "pUBQ10-SNAP-GW", "sequence-type": "addgene-full", "addgene_id": "209350", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -479343,7 +508481,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-ZNF746-C571A", "sequence-type": "addgene-full", "addgene_id": "207821", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -479409,7 +508550,10 @@ "plasmid_name": "Active Wnt3-V5", "sequence-type": "depositor-full", "addgene_id": "43811", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -479456,7 +508600,10 @@ "plasmid_name": "pDONR221_SLC44A3", "sequence-type": "addgene-full", "addgene_id": "132226", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -479487,7 +508634,10 @@ "plasmid_name": "p5E-gfap", "sequence-type": "addgene-full", "addgene_id": "75024", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -479523,7 +508673,10 @@ "plasmid_name": "pTORKm43GWY", "sequence-type": "addgene-full", "addgene_id": "112901", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01516-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31575765" + ], "kit": null, "att_sites": [ "attR3", @@ -479574,7 +508727,6 @@ "plasmid_name": "pDONR221-K40R-short-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "195401", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -479605,7 +508757,10 @@ "plasmid_name": "pDONR223_PKIA_WT", "sequence-type": "addgene-full", "addgene_id": "82153", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -479634,7 +508789,10 @@ "plasmid_name": "pDONR221_SLC22A25", "sequence-type": "addgene-full", "addgene_id": "132012", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -479665,7 +508823,10 @@ "plasmid_name": "pCPP6533", "sequence-type": "addgene-full", "addgene_id": "128734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.04.037", + "https://www.ncbi.nlm.nih.gov/pubmed/29742421" + ], "kit": null, "att_sites": [ "attR2" @@ -479697,7 +508858,6 @@ "plasmid_name": "R777-E131 Hs.MET", "sequence-type": "depositor-full", "addgene_id": "70415", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -479725,7 +508885,10 @@ "plasmid_name": "pMuLE ENTR CMV eGFP L1-R5", "sequence-type": "depositor-full", "addgene_id": "62142", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -479763,7 +508926,10 @@ "plasmid_name": "pYPQ265K", "sequence-type": "addgene-full", "addgene_id": "173997", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "att_sites": [ "attL1", @@ -479797,7 +508963,10 @@ "plasmid_name": "pCK036 desmaMCS:minCerulean,cryaa:Venus", "sequence-type": "addgene-full", "addgene_id": "195981", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attB1", @@ -479841,7 +509010,10 @@ "plasmid_name": "PB-CT3G-CERP2-MG-IRES2-mNeonGreen", "sequence-type": "addgene-full", "addgene_id": "175508", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -479890,7 +509062,10 @@ "plasmid_name": "pDONR223_NOTCH1_ICN", "sequence-type": "addgene-full", "addgene_id": "82087", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -479922,7 +509097,10 @@ "plasmid_name": "pGAPDH::H2B-mScarlet", "sequence-type": "addgene-full", "addgene_id": "186764", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2022.100298", + "https://www.ncbi.nlm.nih.gov/pubmed/36313809" + ], "kit": null, "att_sites": [ "attB1", @@ -479955,7 +509133,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF8", "sequence-type": "addgene-full", "addgene_id": "141278", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -479984,7 +509165,6 @@ "plasmid_name": "Hs.KRAS4a Q61R", "sequence-type": "depositor-full", "addgene_id": "83172", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -480009,7 +509189,10 @@ "plasmid_name": "pDONR223 LC3C no-stop", "sequence-type": "addgene-full", "addgene_id": "123208", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -480038,7 +509221,10 @@ "plasmid_name": "pDONR223-JAK3", "sequence-type": "addgene-full", "addgene_id": "23944", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -480070,7 +509256,6 @@ "plasmid_name": "IDG_FAM26D_OE_1", "sequence-type": "addgene-full", "addgene_id": "161670", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -480129,7 +509314,10 @@ "plasmid_name": "pLenti-CMV-NFE2L2-Puro", "sequence-type": "addgene-full", "addgene_id": "181919", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2118646119", + "https://www.ncbi.nlm.nih.gov/pubmed/35271393" + ], "kit": null, "att_sites": [ "attB1", @@ -480191,7 +509379,10 @@ "plasmid_name": "pBullet-cyt-c", "sequence-type": "depositor-full", "addgene_id": "53066", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "att_sites": [ "attR1", @@ -480228,7 +509419,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term EWSR1", "sequence-type": "addgene-full", "addgene_id": "187586", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "att_sites": [ "attB1", @@ -480272,7 +509466,10 @@ "plasmid_name": "pYPQ265", "sequence-type": "addgene-full", "addgene_id": "164712", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -480309,7 +509506,10 @@ "plasmid_name": "pCM5.48", "sequence-type": "depositor-full", "addgene_id": "19385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -480340,7 +509540,10 @@ "plasmid_name": "pHAGE-TGFBR2-R190H", "sequence-type": "addgene-full", "addgene_id": "116701", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -480391,7 +509594,10 @@ "plasmid_name": "pDONR221_SLC30A4", "sequence-type": "addgene-full", "addgene_id": "132089", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -480422,7 +509628,10 @@ "plasmid_name": "pMXs-ms-L-Myc-L351P", "sequence-type": "depositor-full", "addgene_id": "50777", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "att_sites": [ "attB1", @@ -480450,7 +509659,10 @@ "plasmid_name": "pFUSE-DEST_R1R4", "sequence-type": "addgene-full", "addgene_id": "97186", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-2745", + "https://www.ncbi.nlm.nih.gov/pubmed/28512244" + ], "kit": null, "att_sites": [ "attR1", @@ -480504,7 +509716,10 @@ "plasmid_name": "pJH54_pE12_hyCal7", "sequence-type": "addgene-full", "addgene_id": "160409", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -480535,7 +509750,6 @@ "plasmid_name": "Ad-mMKP3 S159A S197A-Flag", "sequence-type": "addgene-full", "addgene_id": "131579", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -480572,7 +509786,10 @@ "plasmid_name": "pcDNA3.2/v5-DEST hGlut1", "sequence-type": "addgene-full", "addgene_id": "18085", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.09-146472", + "https://www.ncbi.nlm.nih.gov/pubmed/20354141" + ], "kit": null, "att_sites": [ "attB1", @@ -480622,7 +509839,10 @@ "plasmid_name": "pWalium Htt19Q-mCherry", "sequence-type": "addgene-full", "addgene_id": "201248", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddx260", + "https://www.ncbi.nlm.nih.gov/pubmed/28934390" + ], "kit": null, "att_sites": [ "attB1", @@ -480677,7 +509897,10 @@ "plasmid_name": "TFORF2962", "sequence-type": "addgene-full", "addgene_id": "144438", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144438.addgene-full.gb" }, @@ -480686,7 +509909,10 @@ "plasmid_name": "MYC_pLX307", "sequence-type": "addgene-full", "addgene_id": "98363", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -480747,7 +509973,10 @@ "plasmid_name": "pDONR221-SLC35C1_STOP", "sequence-type": "addgene-full", "addgene_id": "161229", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -480778,7 +510007,10 @@ "plasmid_name": "pDONR223_ARAF_p.V145L", "sequence-type": "addgene-full", "addgene_id": "82811", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -480807,7 +510039,6 @@ "plasmid_name": "R777-E166 Hs.PIK3CB-nostop", "sequence-type": "addgene-full", "addgene_id": "70450", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -480837,7 +510068,10 @@ "plasmid_name": "pDEST-ERBB3-v2", "sequence-type": "addgene-full", "addgene_id": "154894", - "references": [], + "references": [ + "https://doi.org/10.1038/s41388-020-01604-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33420373" + ], "kit": null, "att_sites": [ "attB1", @@ -480868,7 +510102,10 @@ "plasmid_name": "pHAGE-ERBB2-V842E", "sequence-type": "addgene-full", "addgene_id": "116358", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -480922,7 +510159,10 @@ "plasmid_name": "GAPDH", "sequence-type": "addgene-full", "addgene_id": "155622", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -480965,7 +510205,10 @@ "plasmid_name": "p3E-rab13", "sequence-type": "addgene-full", "addgene_id": "109667", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -480996,7 +510239,10 @@ "plasmid_name": "TFORF3267", "sequence-type": "addgene-full", "addgene_id": "144743", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -481056,7 +510302,6 @@ "plasmid_name": "pHAGE mCherry-Rab11A S25N", "sequence-type": "addgene-full", "addgene_id": "228037", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -481108,7 +510353,10 @@ "plasmid_name": "pDONR221-SLC1A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161152", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -481139,7 +510387,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_BH3-4E", "sequence-type": "addgene-full", "addgene_id": "187144", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -481184,7 +510435,10 @@ "plasmid_name": "pDONR223_GALNT14_p.R336Q", "sequence-type": "addgene-full", "addgene_id": "81577", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -481216,7 +510470,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.G34R", "sequence-type": "addgene-full", "addgene_id": "81697", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -481249,7 +510506,10 @@ "plasmid_name": "5'-3xFLAG Mef2a-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212062", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -481289,7 +510549,10 @@ "plasmid_name": "pDONR223_KRAS_WT", "sequence-type": "addgene-full", "addgene_id": "81923", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -481319,7 +510582,10 @@ "plasmid_name": "pAdCMV/V5-DEST-Y705F-STAT3-3xFlag", "sequence-type": "addgene-full", "addgene_id": "99261", - "references": [], + "references": [ + "https://doi.org/10.1152/ajpcell.00235.2017", + "https://www.ncbi.nlm.nih.gov/pubmed/29351406" + ], "kit": null, "att_sites": [ "attB1", @@ -481356,7 +510622,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-Spike", "sequence-type": "addgene-full", "addgene_id": "168891", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -481385,7 +510654,10 @@ "plasmid_name": "p3E-Pacsin2", "sequence-type": "addgene-full", "addgene_id": "109587", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -481417,7 +510689,10 @@ "plasmid_name": "pDONR221-SLC12A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161086", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -481448,7 +510723,10 @@ "plasmid_name": "pDONR223_NKX2-1_W208L", "sequence-type": "addgene-full", "addgene_id": "221474", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attL1", @@ -481477,7 +510755,10 @@ "plasmid_name": "TFORF3221", "sequence-type": "addgene-full", "addgene_id": "144697", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -481537,7 +510818,10 @@ "plasmid_name": "TFORF3447", "sequence-type": "addgene-full", "addgene_id": "144923", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -481597,7 +510881,10 @@ "plasmid_name": "pDONR223-ZNF747", "sequence-type": "addgene-full", "addgene_id": "88134", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -481626,7 +510913,10 @@ "plasmid_name": "plenti-UbcP-Myc-CRBN-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107376", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -481685,7 +510975,10 @@ "plasmid_name": "pHAGE-CDK4-R24L", "sequence-type": "addgene-full", "addgene_id": "116217", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -481735,7 +511028,10 @@ "plasmid_name": "SHP2(T253M/Q257L)@pLKO-Trex-SBP", "sequence-type": "addgene-full", "addgene_id": "85458", - "references": [], + "references": [ + "https://doi.org/10.1038/nature18621", + "https://www.ncbi.nlm.nih.gov/pubmed/27362227" + ], "kit": null, "att_sites": [ "attB1", @@ -481802,7 +511098,10 @@ "plasmid_name": "TFORF3101", "sequence-type": "addgene-full", "addgene_id": "144577", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -481862,7 +511161,10 @@ "plasmid_name": "TFORF3517", "sequence-type": "depositor-full", "addgene_id": "144993", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -481922,7 +511224,10 @@ "plasmid_name": "pDONR223_SMARCB1_WT", "sequence-type": "addgene-full", "addgene_id": "81743", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -481934,7 +511239,10 @@ "plasmid_name": "pMMK ENTR 2 CMV mTFP1 Actin", "sequence-type": "addgene-full", "addgene_id": "206255", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attL3", @@ -481963,7 +511271,9 @@ "plasmid_name": "pME-mScarlet-I-P2A-iCre (JDW 917)", "sequence-type": "addgene-full", "addgene_id": "224516", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224516.addgene-full.gb" }, @@ -481972,7 +511282,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_E97A_K100A", "sequence-type": "depositor-full", "addgene_id": "65660", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -482017,7 +511330,9 @@ "plasmid_name": "pME-mKate2 no stop", "sequence-type": "depositor-full", "addgene_id": "80806", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL1", @@ -482049,7 +511364,10 @@ "plasmid_name": "pDONR221-SLCO1B3_STOP", "sequence-type": "addgene-full", "addgene_id": "161366", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -482080,7 +511398,10 @@ "plasmid_name": "pGMEH-10M1-clpX-K127R", "sequence-type": "depositor-full", "addgene_id": "27374", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkp015", + "https://www.ncbi.nlm.nih.gov/pubmed/19174563" + ], "kit": null, "att_sites": [ "attB1", @@ -482114,7 +511435,9 @@ "plasmid_name": "pPB-cT3G-cERP2-CTCFL", "sequence-type": "addgene-full", "addgene_id": "222546", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -482160,7 +511483,6 @@ "plasmid_name": "R777-E313 Hs.SHC4", "sequence-type": "depositor-full", "addgene_id": "70597", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -482188,7 +511510,10 @@ "plasmid_name": "pAG424GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14224", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -482250,7 +511575,10 @@ "plasmid_name": "p{3P3-mTurquoise::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182169", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attR1", @@ -482296,7 +511624,10 @@ "plasmid_name": "A1-LCD-14N+14Q", "sequence-type": "addgene-full", "addgene_id": "178692", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -482331,7 +511662,6 @@ "plasmid_name": "pVP16-tev-PRT1-C195A", "sequence-type": "addgene-full", "addgene_id": "83408", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -482370,7 +511700,10 @@ "plasmid_name": "pME-TagRFPt-NS", "sequence-type": "depositor-full", "addgene_id": "75343", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": null, "att_sites": [ "attL1", @@ -482402,7 +511735,10 @@ "plasmid_name": "pGCS-N6(eGFP)", "sequence-type": "addgene-full", "addgene_id": "85723", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -482453,7 +511789,10 @@ "plasmid_name": "p3E-rab9b", "sequence-type": "addgene-full", "addgene_id": "109728", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -482484,7 +511823,10 @@ "plasmid_name": "pAC1816_pCR8-gSMN2-DN4", "sequence-type": "addgene-full", "addgene_id": "118649", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -482517,7 +511859,10 @@ "plasmid_name": "pENTR D-TOPO-C2_8", "sequence-type": "depositor-full", "addgene_id": "60249", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -482548,7 +511893,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST EIF2C1", "sequence-type": "depositor-full", "addgene_id": "19887", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -482594,7 +511942,10 @@ "plasmid_name": "pAG425 GAL Pong TPase L418A, L420A", "sequence-type": "addgene-full", "addgene_id": "145795", - "references": [], + "references": [ + "https://doi.org/10.1186/1759-8753-1-5", + "https://www.ncbi.nlm.nih.gov/pubmed/20226077" + ], "kit": null, "att_sites": [ "attB1", @@ -482648,7 +511999,10 @@ "plasmid_name": "KA501: pMVP (L3-L2) pA; CMV::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121801", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -482685,7 +512039,10 @@ "plasmid_name": "pDONR223_ACVR1B_p.D335N", "sequence-type": "addgene-full", "addgene_id": "81438", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -482717,7 +512074,10 @@ "plasmid_name": "pRARE-MBP-DEST", "sequence-type": "depositor-full", "addgene_id": "84650", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.111.093518", + "https://www.ncbi.nlm.nih.gov/pubmed/22267487" + ], "kit": null, "att_sites": [ "attR1", @@ -482761,7 +512121,10 @@ "plasmid_name": "pCFJ104 - Pmyo-3::mCherry::unc-54", "sequence-type": "addgene-full", "addgene_id": "19328", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.248", + "https://www.ncbi.nlm.nih.gov/pubmed/18953339" + ], "kit": null, "att_sites": [ "attB1", @@ -482794,7 +512157,6 @@ "plasmid_name": "pLenti-PGK-NXPH4 (neo)", "sequence-type": "addgene-full", "addgene_id": "192078", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -482854,7 +512216,10 @@ "plasmid_name": "actc1b-mKate2-Dnm2b", "sequence-type": "addgene-full", "addgene_id": "109521", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -482896,7 +512261,10 @@ "plasmid_name": "pLEELA", "sequence-type": "depositor-full", "addgene_id": "79752", - "references": [], + "references": [ + "https://doi.org/10.1016/j.febslet.2004.10.062", + "https://www.ncbi.nlm.nih.gov/pubmed/15556641" + ], "kit": null, "att_sites": [ "attR1", @@ -482930,7 +512298,10 @@ "plasmid_name": "pDONR221-SLC22A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161214", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -482961,7 +512332,10 @@ "plasmid_name": "pAG423GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14173", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -482973,7 +512347,10 @@ "plasmid_name": "pDONR223_SPOP_p.E50K", "sequence-type": "addgene-full", "addgene_id": "81631", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -483005,7 +512382,10 @@ "plasmid_name": "pDONR223_TPK1_p.K111M", "sequence-type": "addgene-full", "addgene_id": "82798", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -483034,7 +512414,10 @@ "plasmid_name": "pEBTetBl-CLIP-Sfi1", "sequence-type": "addgene-full", "addgene_id": "136842", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -483079,7 +512462,10 @@ "plasmid_name": "pCBDU-JW", "sequence-type": "addgene-full", "addgene_id": "111237", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4464", + "https://www.ncbi.nlm.nih.gov/pubmed/29039417" + ], "kit": null, "att_sites": [ "attR1", @@ -483119,7 +512505,10 @@ "plasmid_name": "pHAGE-ERBB4-S774G", "sequence-type": "addgene-full", "addgene_id": "116365", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116365.addgene-full.gb" }, @@ -483128,7 +512517,10 @@ "plasmid_name": "TFORF3375", "sequence-type": "addgene-full", "addgene_id": "144851", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -483188,7 +512580,10 @@ "plasmid_name": "pDEST-N2H-N1", "sequence-type": "addgene-full", "addgene_id": "125547", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11809-2", + "https://www.ncbi.nlm.nih.gov/pubmed/31467278" + ], "kit": null, "att_sites": [ "attR1", @@ -483236,7 +512631,10 @@ "plasmid_name": "pDONR221_SLC15A4", "sequence-type": "addgene-full", "addgene_id": "131910", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -483267,7 +512665,10 @@ "plasmid_name": "pEN_TT 3xFLAG-TTI1", "sequence-type": "addgene-full", "addgene_id": "192303", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -483296,7 +512697,10 @@ "plasmid_name": "pGP8GF-ZmAFB2/3 b2", "sequence-type": "addgene-full", "addgene_id": "188425", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attR2" @@ -483339,7 +512743,10 @@ "plasmid_name": "pDRAV-1", "sequence-type": "depositor-full", "addgene_id": "26746", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1521", + "https://www.ncbi.nlm.nih.gov/pubmed/20953177" + ], "kit": null, "file": "data/addgene_plasmids/26746.depositor-full.gb" }, @@ -483348,7 +512755,9 @@ "plasmid_name": "pLentiN MmuPV1 E6", "sequence-type": "addgene-full", "addgene_id": "87661", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28107544" + ], "kit": null, "att_sites": [ "attB1", @@ -483410,7 +512819,10 @@ "plasmid_name": "pBSDONR P4r-P2", "sequence-type": "addgene-full", "addgene_id": "121527", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.110.171785", + "https://www.ncbi.nlm.nih.gov/pubmed/21343429" + ], "kit": null, "att_sites": [ "attP2", @@ -483455,7 +512867,10 @@ "plasmid_name": "BCL6-GFP G55A in Artichoke", "sequence-type": "addgene-full", "addgene_id": "169935", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2925-1", + "https://www.ncbi.nlm.nih.gov/pubmed/33208943" + ], "kit": null, "att_sites": [ "attB1", @@ -483525,7 +512940,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf3b", "sequence-type": "addgene-full", "addgene_id": "158373", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -483570,7 +512988,6 @@ "plasmid_name": "N-SF-TAP-DEST-TLK2-D592V", "sequence-type": "addgene-full", "addgene_id": "218835", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -483625,7 +513042,10 @@ "plasmid_name": "pAG423GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14414", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -483687,7 +513107,6 @@ "plasmid_name": "PSMA4_miniTurbo_Cterm", "sequence-type": "addgene-full", "addgene_id": "222600", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -483730,7 +513149,10 @@ "plasmid_name": "pENTR5'_ubi", "sequence-type": "addgene-full", "addgene_id": "27320", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.059345", + "https://www.ncbi.nlm.nih.gov/pubmed/21138979" + ], "kit": null, "att_sites": [ "attL4", @@ -483761,7 +513183,10 @@ "plasmid_name": "KV001: pMVP (L5-L4) eYFP", "sequence-type": "addgene-full", "addgene_id": "121713", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -483797,7 +513222,10 @@ "plasmid_name": "pDONR223_AURKB_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82963", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -483827,7 +513255,6 @@ "plasmid_name": "pDONR221_NDUFA6_3UTR", "sequence-type": "depositor-full", "addgene_id": "65863", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -483858,7 +513285,9 @@ "plasmid_name": "pDONR221-SLC25A19", "sequence-type": "addgene-full", "addgene_id": "166209", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166209.addgene-full.gb" }, @@ -483867,7 +513296,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-3", "sequence-type": "depositor-full", "addgene_id": "46690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -483918,7 +513350,6 @@ "plasmid_name": "pFRT-TODestGFP_RNAseH1", "sequence-type": "depositor-full", "addgene_id": "65784", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -483965,7 +513396,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-irf2bpl A", "sequence-type": "addgene-full", "addgene_id": "89370", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -484019,7 +513453,10 @@ "plasmid_name": "pMMACE DEST CMV SpCas9", "sequence-type": "addgene-full", "addgene_id": "206268", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attR1", @@ -484057,7 +513494,10 @@ "plasmid_name": "p35SZ", "sequence-type": "depositor-full", "addgene_id": "51513", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attB1", @@ -484106,7 +513546,10 @@ "plasmid_name": "p7142 pHAGE-P-CMVt-N-HA-GAW-ZFYV9", "sequence-type": "addgene-full", "addgene_id": "100162", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -484158,7 +513601,10 @@ "plasmid_name": "pDONR223_OR2T33_WT", "sequence-type": "addgene-full", "addgene_id": "81851", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -484190,7 +513636,10 @@ "plasmid_name": "pDONR221-kcnk1b", "sequence-type": "addgene-full", "addgene_id": "208982", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -484221,7 +513670,10 @@ "plasmid_name": "pYPQ143-ZmUbi", "sequence-type": "addgene-full", "addgene_id": "138107", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL2", @@ -484254,7 +513706,10 @@ "plasmid_name": "pCWXPGR-pTF-betaCatenin", "sequence-type": "addgene-full", "addgene_id": "114281", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.01.061", + "https://www.ncbi.nlm.nih.gov/pubmed/25732825" + ], "kit": null, "att_sites": [ "attB1", @@ -484315,7 +513770,6 @@ "plasmid_name": "R777-E189 Hs.PREX2", "sequence-type": "depositor-full", "addgene_id": "70473", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -484344,7 +513798,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO-miR-30 L1-L4", "sequence-type": "depositor-full", "addgene_id": "62124", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -484380,7 +513837,10 @@ "plasmid_name": "pGC291", "sequence-type": "depositor-full", "addgene_id": "19684", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attL2" @@ -484409,7 +513869,10 @@ "plasmid_name": "pHAGE-BRAF-G466R", "sequence-type": "addgene-full", "addgene_id": "116151", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -484464,7 +513927,10 @@ "plasmid_name": "Tol2-kdrl:mCherry-caax", "sequence-type": "addgene-full", "addgene_id": "194287", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049753", + "https://www.ncbi.nlm.nih.gov/pubmed/36398624" + ], "kit": null, "att_sites": [ "attB1", @@ -484508,7 +513974,9 @@ "plasmid_name": "pDONR221-EIF3D", "sequence-type": "addgene-full", "addgene_id": "166172", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -484539,7 +514007,10 @@ "plasmid_name": "TFORF3155", "sequence-type": "addgene-full", "addgene_id": "144631", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -484599,7 +514070,10 @@ "plasmid_name": "p3E-rab4b", "sequence-type": "addgene-full", "addgene_id": "109715", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -484630,7 +514104,10 @@ "plasmid_name": "pDEST 565-PHL2", "sequence-type": "addgene-full", "addgene_id": "118674", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "att_sites": [ "attB1", @@ -484675,7 +514152,10 @@ "plasmid_name": "pDONR221-SLC36A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161226", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -484706,7 +514186,10 @@ "plasmid_name": "pDONR223_FBXO15_p.E410K", "sequence-type": "addgene-full", "addgene_id": "81405", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -484738,7 +514221,10 @@ "plasmid_name": "LA701: pMVP (L3-L2) P2A-Zeo + WPRE", "sequence-type": "addgene-full", "addgene_id": "121788", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -484774,7 +514260,10 @@ "plasmid_name": "pJEP217-Lenti-CMV-GFP-WPRE-pA", "sequence-type": "addgene-full", "addgene_id": "62925", - "references": [], + "references": [ + "https://doi.org/10.1186/s13041-015-0100-7", + "https://www.ncbi.nlm.nih.gov/pubmed/25887710" + ], "kit": null, "att_sites": [ "attB1", @@ -484836,7 +514325,6 @@ "plasmid_name": "p667-UBC-GFP-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135241", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -484904,7 +514392,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-UD-KD", "sequence-type": "addgene-full", "addgene_id": "140300", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -484956,7 +514447,10 @@ "plasmid_name": "pSC33", "sequence-type": "addgene-full", "addgene_id": "104807", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -485000,7 +514494,6 @@ "plasmid_name": "pSLIK 3xFLAG-NUP37 neo", "sequence-type": "addgene-full", "addgene_id": "220361", - "references": [], "kit": null, "file": "data/addgene_plasmids/220361.addgene-full.gb" }, @@ -485009,7 +514502,6 @@ "plasmid_name": "pENTR_mCherry", "sequence-type": "addgene-full", "addgene_id": "139554", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -485044,7 +514536,10 @@ "plasmid_name": "pRATIO1212", "sequence-type": "addgene-full", "addgene_id": "141299", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -485099,7 +514594,9 @@ "plasmid_name": "pENTR4 AvrRpm1", "sequence-type": "addgene-full", "addgene_id": "209185", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.09.25.558804" + ], "kit": null, "att_sites": [ "attL1", @@ -485123,7 +514620,10 @@ "plasmid_name": "pENTR_Trf2", "sequence-type": "addgene-full", "addgene_id": "125159", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-019-1210-7", + "https://www.ncbi.nlm.nih.gov/pubmed/31092928" + ], "kit": null, "att_sites": [ "attB1", @@ -485154,7 +514654,10 @@ "plasmid_name": "pSGE_769_DipB-EcR_dCP", "sequence-type": "depositor-full", "addgene_id": "71222", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -485187,7 +514690,10 @@ "plasmid_name": "pcDNA3.2 GW delCMV", "sequence-type": "depositor-full", "addgene_id": "29496", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "att_sites": [ "attR1", @@ -485239,7 +514745,10 @@ "plasmid_name": "pANG03", "sequence-type": "addgene-full", "addgene_id": "178085", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2021.102608", + "https://www.ncbi.nlm.nih.gov/pubmed/34801582" + ], "kit": null, "att_sites": [ "attR1", @@ -485270,7 +514779,10 @@ "plasmid_name": "pDONR221 Rrp8", "sequence-type": "depositor-full", "addgene_id": "63775", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1" @@ -485299,7 +514811,10 @@ "plasmid_name": "763 pME mApple", "sequence-type": "addgene-full", "addgene_id": "195960", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL1", @@ -485332,7 +514847,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aa1.2", "sequence-type": "addgene-full", "addgene_id": "136373", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL2", @@ -485362,7 +514880,6 @@ "plasmid_name": "R777-E263 Hs.RASSF6", "sequence-type": "depositor-full", "addgene_id": "70547", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -485390,7 +514907,10 @@ "plasmid_name": "pLX317 CALM2", "sequence-type": "addgene-full", "addgene_id": "193684", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "att_sites": [ "attB1", @@ -485451,7 +514971,10 @@ "plasmid_name": "pDONR221_SLC28A2", "sequence-type": "addgene-full", "addgene_id": "132068", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -485483,7 +515006,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-LC3B2-GFP", "sequence-type": "addgene-full", "addgene_id": "123109", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -485536,7 +515062,6 @@ "plasmid_name": "pAM-35s-CERK1 D441V-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102403", - "references": [], "kit": null, "file": "data/addgene_plasmids/102403.addgene-full.gb" }, @@ -485545,7 +515070,10 @@ "plasmid_name": "MAC-TFRC", "sequence-type": "addgene-full", "addgene_id": "172420", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -485591,7 +515119,6 @@ "plasmid_name": "pAG416GAL10-Bat-SL-CoVZC45_3CL", "sequence-type": "addgene-full", "addgene_id": "201944", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -485640,7 +515167,10 @@ "plasmid_name": "pHAGE-FLT1-W589*", "sequence-type": "addgene-full", "addgene_id": "116400", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -485694,7 +515224,6 @@ "plasmid_name": "IDG_KCNJ14_OE_1", "sequence-type": "addgene-full", "addgene_id": "161691", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -485753,7 +515282,10 @@ "plasmid_name": "pCOCK CMVwt", "sequence-type": "depositor-full", "addgene_id": "46559", - "references": [], + "references": [ + "https://doi.org/10.1007/s11693-011-9089-0", + "https://www.ncbi.nlm.nih.gov/pubmed/23205156" + ], "kit": null, "att_sites": [ "attB1", @@ -485802,7 +515334,6 @@ "plasmid_name": "pX458-Ef1a-dCas9-VPR-H2B-mCherry (CRISPRa)", "sequence-type": "addgene-full", "addgene_id": "175572", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -485847,7 +515378,10 @@ "plasmid_name": "pAAV2ss-U6-sgGFP", "sequence-type": "addgene-full", "addgene_id": "190899", - "references": [], + "references": [ + "https://doi.org/10.1016/j.omtm.2023.03.013", + "https://www.ncbi.nlm.nih.gov/pubmed/37090478" + ], "kit": null, "att_sites": [ "attB1", @@ -485881,7 +515415,10 @@ "plasmid_name": "pLenti-Lifeact mApple", "sequence-type": "addgene-full", "addgene_id": "187687", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0069378", + "https://www.ncbi.nlm.nih.gov/pubmed/23990882" + ], "kit": null, "att_sites": [ "attB1", @@ -485944,7 +515481,6 @@ "plasmid_name": "pLIX403-EBFP2-ccdB-NatMx", "sequence-type": "addgene-full", "addgene_id": "158559", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -486004,7 +515540,10 @@ "plasmid_name": "pHAGE-PTEN-R335*", "sequence-type": "addgene-full", "addgene_id": "116634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -486053,7 +515592,10 @@ "plasmid_name": "pENTR-L5-CAG-R3", "sequence-type": "addgene-full", "addgene_id": "141036", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL5", @@ -486081,7 +515623,10 @@ "plasmid_name": "C514-E23: attB5r-RU5u-3xFLAG-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162958", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -486111,7 +515656,10 @@ "plasmid_name": "pDONR223_HIF1A_WT", "sequence-type": "addgene-full", "addgene_id": "82129", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -486140,7 +515688,10 @@ "plasmid_name": "pDONR223_TNFRSF14_p.A102P", "sequence-type": "addgene-full", "addgene_id": "81360", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -486172,7 +515723,10 @@ "plasmid_name": "pD765 FDFT1 3'UTR", "sequence-type": "addgene-full", "addgene_id": "105765", - "references": [], + "references": [ + "https://doi.org/10.1038/srep40813", + "https://www.ncbi.nlm.nih.gov/pubmed/28102325" + ], "kit": null, "att_sites": [ "attB1", @@ -486208,7 +515762,10 @@ "plasmid_name": "pENTR-R4R3-2xmRuby-C", "sequence-type": "addgene-full", "addgene_id": "113756", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -486243,7 +515800,10 @@ "plasmid_name": "MKAKU41exp", "sequence-type": "addgene-full", "addgene_id": "131015", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "att_sites": [ "attB1", @@ -486278,7 +515838,6 @@ "plasmid_name": "R777-E225 Hs.RAPGEF2", "sequence-type": "depositor-full", "addgene_id": "70509", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -486306,7 +515865,6 @@ "plasmid_name": "p3E_he1a:eYFP", "sequence-type": "addgene-full", "addgene_id": "113879", - "references": [], "kit": null, "file": "data/addgene_plasmids/113879.addgene-full.gb" }, @@ -486315,7 +515873,6 @@ "plasmid_name": "BRAF - R671Q in pENTR", "sequence-type": "addgene-full", "addgene_id": "216615", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -486345,7 +515902,10 @@ "plasmid_name": "BirA-Myc_N_MYC", "sequence-type": "addgene-full", "addgene_id": "167715", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -486390,7 +515950,10 @@ "plasmid_name": "pENTR223-PRDX5K85R", "sequence-type": "addgene-full", "addgene_id": "98694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "att_sites": [ "attL1", @@ -486419,7 +515982,10 @@ "plasmid_name": "pDONR223_BAMBI_WT", "sequence-type": "addgene-full", "addgene_id": "82252", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -486448,7 +516014,6 @@ "plasmid_name": "R777-E009 Hs.ARAF", "sequence-type": "depositor-full", "addgene_id": "70293", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -486476,7 +516041,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0389-luc2", "sequence-type": "addgene-full", "addgene_id": "214625", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -486520,7 +516088,9 @@ "plasmid_name": "pTwist-msEEA1", "sequence-type": "addgene-full", "addgene_id": "214991", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "att_sites": [ "attL1", @@ -486550,7 +516120,10 @@ "plasmid_name": "pDONR221_SLC29A3", "sequence-type": "addgene-full", "addgene_id": "132127", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132127.addgene-full.gb" }, @@ -486559,7 +516132,9 @@ "plasmid_name": "pcDNA5-miniTurbo-TAF5-FL", "sequence-type": "addgene-full", "addgene_id": "209051", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attB1", @@ -486603,7 +516178,10 @@ "plasmid_name": "pDONR221_SLC52A1", "sequence-type": "depositor-full", "addgene_id": "132169", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -486634,7 +516212,10 @@ "plasmid_name": "pLX304-EZH1-dPSET", "sequence-type": "addgene-full", "addgene_id": "203586", - "references": [], + "references": [ + "https://doi.org/10.1126/scitranslmed.aal5272", + "https://www.ncbi.nlm.nih.gov/pubmed/28701475" + ], "kit": null, "att_sites": [ "attB1", @@ -486693,7 +516274,6 @@ "plasmid_name": "IDG_FXYD7_OE_1", "sequence-type": "addgene-full", "addgene_id": "161637", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -486752,7 +516332,10 @@ "plasmid_name": "pDONR223-ZNF674", "sequence-type": "addgene-full", "addgene_id": "88785", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -486781,7 +516364,10 @@ "plasmid_name": "pMx/ATP10A(E203Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209258", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "att_sites": [ "attB1", @@ -486816,7 +516402,10 @@ "plasmid_name": "pENTR-actin-V159N", "sequence-type": "addgene-full", "addgene_id": "118383", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attL1", @@ -486847,7 +516436,10 @@ "plasmid_name": "pHAGE-GALNTL6", "sequence-type": "addgene-full", "addgene_id": "116746", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -486901,7 +516493,10 @@ "plasmid_name": "TRPM2_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53920", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "att_sites": [ "attB1", @@ -486941,7 +516536,10 @@ "plasmid_name": "pYPQ291", "sequence-type": "addgene-full", "addgene_id": "129671", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL1", @@ -486973,7 +516571,10 @@ "plasmid_name": "pDONR223_STK11_WT", "sequence-type": "addgene-full", "addgene_id": "82320", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -487002,7 +516603,10 @@ "plasmid_name": "pQCXIZ CMV/TO DEST (w321-2)", "sequence-type": "depositor-full", "addgene_id": "17401", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -487049,7 +516653,10 @@ "plasmid_name": "pCM1.128", "sequence-type": "depositor-full", "addgene_id": "21385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL4", @@ -487080,7 +516687,10 @@ "plasmid_name": "W118-1_hTGM3-Flag", "sequence-type": "addgene-full", "addgene_id": "180408", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "att_sites": [ "attB1", @@ -487143,7 +516753,6 @@ "plasmid_name": "pPyCAG-Nanog(T100A)-IP", "sequence-type": "depositor-full", "addgene_id": "62989", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -487186,7 +516795,10 @@ "plasmid_name": "VanGlow-RR-DSCP", "sequence-type": "depositor-full", "addgene_id": "83339", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.01.014", + "https://www.ncbi.nlm.nih.gov/pubmed/28245922" + ], "kit": null, "att_sites": [ "attR1", @@ -487218,7 +516830,6 @@ "plasmid_name": "pDONR221-HMGN1-SE", "sequence-type": "addgene-full", "addgene_id": "192720", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -487249,7 +516860,10 @@ "plasmid_name": "pPB-cT3G-cERP2-TCF21", "sequence-type": "addgene-full", "addgene_id": "192894", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -487295,7 +516909,10 @@ "plasmid_name": "pAG413GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14310", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -487356,7 +516973,10 @@ "plasmid_name": "pDONR221_SLC25A6", "sequence-type": "addgene-full", "addgene_id": "132055", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -487387,7 +517007,10 @@ "plasmid_name": "PTPRA_C433S-SHC", "sequence-type": "addgene-full", "addgene_id": "139612", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -487431,7 +517054,10 @@ "plasmid_name": "pGWB414", "sequence-type": "depositor-full", "addgene_id": "74808", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -487481,7 +517107,6 @@ "plasmid_name": "pDEST26-hTLR4-Nluc", "sequence-type": "addgene-full", "addgene_id": "197642", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -487532,7 +517157,10 @@ "plasmid_name": "pDONR223_B2M_p.M1I", "sequence-type": "addgene-full", "addgene_id": "81289", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -487564,7 +517192,6 @@ "plasmid_name": "R777-E055 Hs.EIF4EBP1", "sequence-type": "depositor-full", "addgene_id": "70339", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -487592,7 +517219,10 @@ "plasmid_name": "pDONR221_SLC52A3", "sequence-type": "addgene-full", "addgene_id": "132181", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -487623,7 +517253,9 @@ "plasmid_name": "pLX317-hcRED", "sequence-type": "addgene-full", "addgene_id": "115440", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "att_sites": [ "attB1", @@ -487682,7 +517314,10 @@ "plasmid_name": "pENTR221-Renilla", "sequence-type": "addgene-full", "addgene_id": "79496", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -487718,7 +517353,10 @@ "plasmid_name": "pHAGE-PPP2R1A-V525A", "sequence-type": "addgene-full", "addgene_id": "116609", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -487773,7 +517411,6 @@ "plasmid_name": "pLIX403-ccdB-EYFP", "sequence-type": "addgene-full", "addgene_id": "158564", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -487834,7 +517471,10 @@ "plasmid_name": "pENTR223-LF1", "sequence-type": "addgene-full", "addgene_id": "195812", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -487863,7 +517503,6 @@ "plasmid_name": "R777-E326 Hs.SPRED3-nostop", "sequence-type": "depositor-full", "addgene_id": "70610", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -487891,7 +517530,10 @@ "plasmid_name": "pLenti6.2-Renilla-ccdB", "sequence-type": "addgene-full", "addgene_id": "87076", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.047", + "https://www.ncbi.nlm.nih.gov/pubmed/22939624" + ], "kit": null, "att_sites": [ "attR1", @@ -487956,7 +517598,10 @@ "plasmid_name": "C514-E54: attB5r-RBS-His6-Halotag-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162965", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -487987,7 +517632,10 @@ "plasmid_name": "pMH-EF1-GFP", "sequence-type": "addgene-full", "addgene_id": "133018", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2002193117", + "https://www.ncbi.nlm.nih.gov/pubmed/32611815" + ], "kit": null, "att_sites": [ "attR1", @@ -488036,7 +517684,10 @@ "plasmid_name": "p8325 pLIX YAP1 WT", "sequence-type": "addgene-full", "addgene_id": "184527", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184527.addgene-full.gb" }, @@ -488045,7 +517696,10 @@ "plasmid_name": "pDONR223_ERBB3_WT", "sequence-type": "addgene-full", "addgene_id": "82114", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -488074,7 +517728,10 @@ "plasmid_name": "MAC_N_TLX3", "sequence-type": "addgene-full", "addgene_id": "167807", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -488119,7 +517776,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2 _NSP1", "sequence-type": "addgene-full", "addgene_id": "169376", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -488161,7 +517817,10 @@ "plasmid_name": "JAM2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176966", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -488213,7 +517872,10 @@ "plasmid_name": "pEXPqcxip-hFTSJ3-FLAG", "sequence-type": "addgene-full", "addgene_id": "165463", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1322545111", + "https://www.ncbi.nlm.nih.gov/pubmed/24778252" + ], "kit": null, "att_sites": [ "attB1", @@ -488258,7 +517920,10 @@ "plasmid_name": "pDONR221_SLCO6A1", "sequence-type": "addgene-full", "addgene_id": "132261", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -488289,7 +517954,6 @@ "plasmid_name": "pREP42xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79018", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -488334,7 +517998,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST SNAP29-V5", "sequence-type": "depositor-full", "addgene_id": "69821", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "att_sites": [ "attB1", @@ -488384,7 +518051,10 @@ "plasmid_name": "pHAGE-PIK3CD-P864L", "sequence-type": "addgene-full", "addgene_id": "116572", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -488438,7 +518108,10 @@ "plasmid_name": "pDONR223_FCGR3B_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83016", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -488467,7 +518140,10 @@ "plasmid_name": "pGWB504", "sequence-type": "depositor-full", "addgene_id": "74846", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -488516,7 +518192,10 @@ "plasmid_name": "BirA-Myc_N_TAL1", "sequence-type": "addgene-full", "addgene_id": "167728", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -488560,7 +518239,10 @@ "plasmid_name": "tetO-AKT1", "sequence-type": "addgene-full", "addgene_id": "170682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -488623,7 +518305,10 @@ "plasmid_name": "pENTR_L1-BirA(R118G)-YFP-NLS-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127360", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL1", @@ -488661,7 +518346,10 @@ "plasmid_name": "pFRT/TO/FLAG/HA-DEST PABPC4", "sequence-type": "addgene-full", "addgene_id": "19882", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "att_sites": [ "attB1", @@ -488706,7 +518394,10 @@ "plasmid_name": "pSGE_719_S2-1_GATA-to-ETS21C", "sequence-type": "depositor-full", "addgene_id": "71175", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -488739,7 +518430,10 @@ "plasmid_name": "pT2-cryR;dll4CE2-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90147", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -488787,7 +518481,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0374-luc2", "sequence-type": "addgene-full", "addgene_id": "214618", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214618.addgene-full.gb" }, @@ -488796,7 +518493,10 @@ "plasmid_name": "pENTR L5-GAL4-L2", "sequence-type": "depositor-full", "addgene_id": "32304", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attL2", @@ -488828,7 +518528,10 @@ "plasmid_name": "pR26 CAG/GFP Dest", "sequence-type": "addgene-full", "addgene_id": "74281", - "references": [], + "references": [ + "https://doi.org/10.1186/s12896-016-0234-4", + "https://www.ncbi.nlm.nih.gov/pubmed/26772810" + ], "kit": null, "att_sites": [ "attR1", @@ -488899,7 +518602,6 @@ "plasmid_name": "R777-E093 Hs.FNTA", "sequence-type": "depositor-full", "addgene_id": "70377", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -488928,7 +518630,10 @@ "plasmid_name": "pHAGE-TBC1D3B-G164E", "sequence-type": "addgene-full", "addgene_id": "116692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116692.addgene-full.gb" }, @@ -488937,7 +518642,10 @@ "plasmid_name": "pCFJ2474 - pEXP[Psmu-2 | cas9(PATCs) | gpd-2 tagRFP-T(myr, patcs) smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159816", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -488972,7 +518680,6 @@ "plasmid_name": "pAG416GAL10-YES1-6stop", "sequence-type": "addgene-full", "addgene_id": "203476", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -489021,7 +518728,10 @@ "plasmid_name": "pHAGE-PIK3CB-K290N", "sequence-type": "addgene-full", "addgene_id": "116556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -489076,7 +518786,10 @@ "plasmid_name": "pDONR221 Nsr1", "sequence-type": "depositor-full", "addgene_id": "63769", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -489107,7 +518820,10 @@ "plasmid_name": "pCZGY3196", "sequence-type": "addgene-full", "addgene_id": "172696", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26376", + "https://www.ncbi.nlm.nih.gov/pubmed/28767038" + ], "kit": null, "att_sites": [ "attB1", @@ -489140,7 +518856,9 @@ "plasmid_name": "pDONR223-TAF5-\u2206ex8", "sequence-type": "addgene-full", "addgene_id": "209048", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attL1", @@ -489169,7 +518887,6 @@ "plasmid_name": "pcDNA3.1-ccdB-TwinStrep", "sequence-type": "addgene-full", "addgene_id": "214988", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -489222,7 +518939,10 @@ "plasmid_name": "pDONR221-SLCO6A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161427", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -489253,7 +518973,10 @@ "plasmid_name": "pT2-cryR;mafbbP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90163", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90163.addgene-full.gb" }, @@ -489262,7 +518985,10 @@ "plasmid_name": "pENTR223-BSLF1", "sequence-type": "addgene-full", "addgene_id": "195836", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -489291,7 +519017,10 @@ "plasmid_name": "pENTR223-BSRF1", "sequence-type": "addgene-full", "addgene_id": "195782", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -489320,7 +519049,10 @@ "plasmid_name": "C512-E04: attB5r-mCherry-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162941", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -489351,7 +519083,10 @@ "plasmid_name": "pCellFree_G08", "sequence-type": "depositor-full", "addgene_id": "67142", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "att_sites": [ "attR1", @@ -489392,7 +519127,6 @@ "plasmid_name": "DDX3X - E186A in pENTR", "sequence-type": "addgene-full", "addgene_id": "216577", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -489421,7 +519155,10 @@ "plasmid_name": "pDEST-Myc-FBW7 Delta F-Box", "sequence-type": "addgene-full", "addgene_id": "197452", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "att_sites": [ "attB1", @@ -489473,7 +519210,10 @@ "plasmid_name": "pDONR221_SLC7A9", "sequence-type": "addgene-full", "addgene_id": "132245", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -489504,7 +519244,10 @@ "plasmid_name": "pJW4.16", "sequence-type": "depositor-full", "addgene_id": "62871", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -489548,7 +519291,10 @@ "plasmid_name": "pJRA-GW", "sequence-type": "addgene-full", "addgene_id": "209333", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "att_sites": [ "attR1", @@ -489588,7 +519334,10 @@ "plasmid_name": "pDONR223_HSP90B1_WT", "sequence-type": "addgene-full", "addgene_id": "82130", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -489617,7 +519366,10 @@ "plasmid_name": "pDONR223_TP53_p.S215I", "sequence-type": "addgene-full", "addgene_id": "81379", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -489650,7 +519402,10 @@ "plasmid_name": "pCR8/GW/TOPO-ELK1", "sequence-type": "addgene-full", "addgene_id": "98616", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -489679,7 +519434,6 @@ "plasmid_name": "g6s pDONR", "sequence-type": "addgene-full", "addgene_id": "117454", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -489710,7 +519464,10 @@ "plasmid_name": "BACE2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176942", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -489762,7 +519519,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-LC3C-GFP", "sequence-type": "addgene-full", "addgene_id": "123110", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123110.addgene-full.gb" }, @@ -489771,7 +519531,10 @@ "plasmid_name": "pENTR-mOvol1", "sequence-type": "addgene-full", "addgene_id": "120359", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2018.12.008", + "https://www.ncbi.nlm.nih.gov/pubmed/30639212" + ], "kit": null, "att_sites": [ "attL1", @@ -489802,7 +519565,10 @@ "plasmid_name": "pZA16", "sequence-type": "addgene-full", "addgene_id": "158494", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -489832,7 +519598,10 @@ "plasmid_name": "pDONR221_SLC38A11", "sequence-type": "addgene-full", "addgene_id": "132071", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -489863,7 +519632,10 @@ "plasmid_name": "p2R3a-TagRFP-OcsT", "sequence-type": "depositor-full", "addgene_id": "71270", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL3", @@ -489900,7 +519672,10 @@ "plasmid_name": "pENTR macroH2A1.2-C", "sequence-type": "depositor-full", "addgene_id": "30512", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2011.144", + "https://www.ncbi.nlm.nih.gov/pubmed/21552206" + ], "kit": null, "att_sites": [ "attL1", @@ -489931,7 +519706,10 @@ "plasmid_name": "C122-E15: mOrange", "sequence-type": "addgene-full", "addgene_id": "162895", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -489965,7 +519743,6 @@ "plasmid_name": "IDG_CHRND_OE_1", "sequence-type": "addgene-full", "addgene_id": "161688", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -490024,7 +519801,10 @@ "plasmid_name": "pHAGE-IGF1R-S729S", "sequence-type": "addgene-full", "addgene_id": "116419", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -490074,7 +519854,10 @@ "plasmid_name": "pDONR223-ROR2", "sequence-type": "addgene-full", "addgene_id": "23927", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -490086,7 +519869,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF9B", "sequence-type": "addgene-full", "addgene_id": "141280", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -490115,7 +519901,10 @@ "plasmid_name": "pDONR223-MAP3K7", "sequence-type": "addgene-full", "addgene_id": "23693", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -490127,7 +519916,10 @@ "plasmid_name": "pENTR-GFP-WT1 -KTS N terminal HA", "sequence-type": "addgene-full", "addgene_id": "217641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "att_sites": [ "attB2", @@ -490162,7 +519954,10 @@ "plasmid_name": "pDEST40-2XFL-Src-Y530F", "sequence-type": "addgene-full", "addgene_id": "140319", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -490214,7 +520009,10 @@ "plasmid_name": "pLenti-sgRNA-lib 2.0", "sequence-type": "addgene-full", "addgene_id": "89638", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt.3715", + "https://www.ncbi.nlm.nih.gov/pubmed/27798563" + ], "kit": null, "att_sites": [ "attR1", @@ -490263,7 +520061,6 @@ "plasmid_name": "p667-UBC-BRSK1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135258", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -490328,7 +520125,10 @@ "plasmid_name": "pCK005 ubi:mCerulean_ubb-polyA", "sequence-type": "addgene-full", "addgene_id": "195979", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attB1", @@ -490374,7 +520174,6 @@ "plasmid_name": "R777-E231 Hs.RASA3", "sequence-type": "depositor-full", "addgene_id": "70515", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -490402,7 +520201,10 @@ "plasmid_name": "pHAGE-MET", "sequence-type": "addgene-full", "addgene_id": "116762", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -490456,7 +520258,9 @@ "plasmid_name": "acta2_mCherry_pA_pDestTolpA2", "sequence-type": "depositor-full", "addgene_id": "78685", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24594685" + ], "kit": null, "att_sites": [ "attB1", @@ -490496,7 +520300,10 @@ "plasmid_name": "pLX302 Luciferase-V5 puro", "sequence-type": "addgene-full", "addgene_id": "47553", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.2003624", + "https://www.ncbi.nlm.nih.gov/pubmed/23921087" + ], "kit": null, "att_sites": [ "attB1", @@ -490559,7 +520366,10 @@ "plasmid_name": "pME-Fv2E-flt4um200-ns", "sequence-type": "depositor-full", "addgene_id": "67696", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "att_sites": [ "attL1", @@ -490593,7 +520403,10 @@ "plasmid_name": "pAG414GPD-TpCYP722C(pYL851)", "sequence-type": "addgene-full", "addgene_id": "178295", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "att_sites": [ "attB1", @@ -490645,7 +520458,10 @@ "plasmid_name": "pDONR223_BRCA1_WT", "sequence-type": "addgene-full", "addgene_id": "82196", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -490674,7 +520490,10 @@ "plasmid_name": "pDONR221_SLC2A1", "sequence-type": "addgene-full", "addgene_id": "132103", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -490705,7 +520524,10 @@ "plasmid_name": "CHMP6_GFP", "sequence-type": "addgene-full", "addgene_id": "31806", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1201847", + "https://www.ncbi.nlm.nih.gov/pubmed/21310966" + ], "kit": null, "att_sites": [ "attB1", @@ -490746,7 +520568,10 @@ "plasmid_name": "pWS510", "sequence-type": "addgene-full", "addgene_id": "123062", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123062.addgene-full.gb" }, @@ -490755,7 +520580,6 @@ "plasmid_name": "R777-E358 Hs.VAV1-nostop", "sequence-type": "depositor-full", "addgene_id": "70642", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -490783,7 +520607,10 @@ "plasmid_name": "pDONR223_RHEB_WT", "sequence-type": "addgene-full", "addgene_id": "82276", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -490812,7 +520639,6 @@ "plasmid_name": "pProkR2.Cre.T2A.Venus", "sequence-type": "addgene-full", "addgene_id": "169014", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -490854,7 +520680,10 @@ "plasmid_name": "pHAGE-eGFP-OPTN D474N", "sequence-type": "addgene-full", "addgene_id": "175762", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -490907,7 +520736,10 @@ "plasmid_name": "pENTR/pSM2(U6) (w51-1)", "sequence-type": "depositor-full", "addgene_id": "17387", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -490936,7 +520768,10 @@ "plasmid_name": "Flag-HA-USP26", "sequence-type": "addgene-full", "addgene_id": "22598", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -490985,7 +520820,10 @@ "plasmid_name": "pATD", "sequence-type": "addgene-full", "addgene_id": "141012", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR3", @@ -491018,7 +520856,6 @@ "plasmid_name": "R777-E041 Hs.DUSP5", "sequence-type": "depositor-full", "addgene_id": "70325", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -491046,7 +520883,10 @@ "plasmid_name": "pDONR221_SLC8B1", "sequence-type": "addgene-full", "addgene_id": "132198", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -491077,7 +520917,10 @@ "plasmid_name": "pcDNA5FRT/TO-Cezanne-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113492", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -491121,7 +520964,10 @@ "plasmid_name": "pWZL Neo Myr Flag TBK1", "sequence-type": "addgene-full", "addgene_id": "20648", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "att_sites": [ "attB1", @@ -491162,7 +521008,10 @@ "plasmid_name": "pDONR221-ANKH", "sequence-type": "addgene-full", "addgene_id": "132278", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -491193,7 +521042,10 @@ "plasmid_name": "pDONR221-ZNF385A", "sequence-type": "depositor-full", "addgene_id": "101615", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -491224,7 +521076,10 @@ "plasmid_name": "pMXs-NKX6.1", "sequence-type": "addgene-full", "addgene_id": "32934", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2011.07.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21852222" + ], "kit": null, "att_sites": [ "attB1", @@ -491252,7 +521107,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PIP5K1C_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170600", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -491318,7 +521172,10 @@ "plasmid_name": "pGWB420", "sequence-type": "depositor-full", "addgene_id": "74814", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74814.depositor-full.gb" }, @@ -491327,7 +521184,10 @@ "plasmid_name": "pDONR223_TNF_p.S157R", "sequence-type": "addgene-full", "addgene_id": "81344", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -491359,7 +521219,6 @@ "plasmid_name": "g11s pD42", "sequence-type": "addgene-full", "addgene_id": "117469", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -491398,7 +521257,10 @@ "plasmid_name": "pFUGW-Pol2-ffLuc2-eGFP", "sequence-type": "depositor-full", "addgene_id": "71394", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1755-148X.2009.00545.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19175523" + ], "kit": null, "att_sites": [ "attB1", @@ -491440,7 +521302,6 @@ "plasmid_name": "pLV UbC6-ARRET", "sequence-type": "depositor-full", "addgene_id": "111378", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -491495,7 +521356,10 @@ "plasmid_name": "pMLS360", "sequence-type": "depositor-full", "addgene_id": "73687", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.184275", + "https://www.ncbi.nlm.nih.gov/pubmed/26837755" + ], "kit": null, "att_sites": [ "attB1", @@ -491535,7 +521399,6 @@ "plasmid_name": "pDONR221-ncam2", "sequence-type": "addgene-full", "addgene_id": "192739", - "references": [], "kit": null, "file": "data/addgene_plasmids/192739.addgene-full.gb" }, @@ -491544,7 +521407,10 @@ "plasmid_name": "W118-1_hTGM6-Flag", "sequence-type": "addgene-full", "addgene_id": "180411", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "att_sites": [ "attB1", @@ -491607,7 +521473,10 @@ "plasmid_name": "MAC_N_TBG1", "sequence-type": "addgene-full", "addgene_id": "111696", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -491652,7 +521521,6 @@ "plasmid_name": "pAG426GAL-HCV_NS3-GS-NS4A", "sequence-type": "addgene-full", "addgene_id": "203504", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -491706,7 +521574,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBE2QL1-CS-Strep/HA", "sequence-type": "addgene-full", "addgene_id": "129513", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "att_sites": [ "attB1", @@ -491750,7 +521621,10 @@ "plasmid_name": "pDONR223-DYRK3", "sequence-type": "addgene-full", "addgene_id": "23635", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -491782,7 +521656,10 @@ "plasmid_name": "pHAGE-KRAS-G12V", "sequence-type": "addgene-full", "addgene_id": "116424", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -491833,7 +521710,10 @@ "plasmid_name": "pYPQ-NF-L3-NF-L1-dMb2Cas12a", "sequence-type": "addgene-full", "addgene_id": "177686", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.202100571", + "https://www.ncbi.nlm.nih.gov/pubmed/35377968" + ], "kit": null, "att_sites": [ "attL1", @@ -491866,7 +521746,10 @@ "plasmid_name": "pCAG/ATP8B1(E234Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209241", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "att_sites": [ "attB1", @@ -491911,7 +521794,10 @@ "plasmid_name": "pSGE_91_4xUAS_dCP", "sequence-type": "depositor-full", "addgene_id": "71169", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71169.depositor-full.gb" }, @@ -491920,7 +521806,6 @@ "plasmid_name": "pSC49", "sequence-type": "addgene-full", "addgene_id": "104823", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -491963,7 +521848,10 @@ "plasmid_name": "pDESTsvaw", "sequence-type": "depositor-full", "addgene_id": "32318", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "att_sites": [ "attR1", @@ -491998,7 +521886,6 @@ "plasmid_name": "p663-UBC-V5-eGFP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135265", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -492068,7 +521955,10 @@ "plasmid_name": "pDONR221-PARP15", "sequence-type": "addgene-full", "addgene_id": "184471", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "att_sites": [ "attL1", @@ -492099,7 +521989,10 @@ "plasmid_name": "pENTR/pTER+ (430-1)", "sequence-type": "depositor-full", "addgene_id": "17453", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17453.depositor-full.gb" }, @@ -492153,7 +522046,10 @@ "plasmid_name": "p5E-4xnrUAS", "sequence-type": "addgene-full", "addgene_id": "87120", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL4", @@ -492184,7 +522080,10 @@ "plasmid_name": "4xnrUAS:MLS-KillerRed in pTol2pA2-acrys-EGFP-", "sequence-type": "addgene-full", "addgene_id": "115516", - "references": [], + "references": [ + "https://doi.org/10.1016/j.redox.2018.08.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30193184" + ], "kit": null, "att_sites": [ "attB1", @@ -492226,7 +522125,6 @@ "plasmid_name": "pCM3.12", "sequence-type": "depositor-full", "addgene_id": "19606", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -492249,7 +522147,10 @@ "plasmid_name": "pYPQ166-iSpyMac", "sequence-type": "addgene-full", "addgene_id": "149553", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2020.100101", + "https://www.ncbi.nlm.nih.gov/pubmed/33898973" + ], "kit": null, "att_sites": [ "attL1", @@ -492281,7 +522182,6 @@ "plasmid_name": "pDTA-5", "sequence-type": "addgene-full", "addgene_id": "128845", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -492327,7 +522227,10 @@ "plasmid_name": "pAG423GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14342", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -492389,7 +522292,10 @@ "plasmid_name": "pHAGE-BRAF-L537S", "sequence-type": "addgene-full", "addgene_id": "116175", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -492444,7 +522350,10 @@ "plasmid_name": "p{Mhc-F4-678-EGFP::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182170", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attR1", @@ -492493,7 +522402,10 @@ "plasmid_name": "p7056 pHAGE-P-CMVt-N-HA-GAW-CPT1A", "sequence-type": "addgene-full", "addgene_id": "100146", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -492545,7 +522457,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF7a", "sequence-type": "depositor-full", "addgene_id": "168882", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -492574,7 +522489,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK20_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189883", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -492640,7 +522554,10 @@ "plasmid_name": "pYPQ287 (BsCas12a)", "sequence-type": "addgene-full", "addgene_id": "138123", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -492672,7 +522589,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.G100V", "sequence-type": "addgene-full", "addgene_id": "81421", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -492704,7 +522624,10 @@ "plasmid_name": "KB701: pMAGIC (L5-L4) hU6::SaCas9 gRNA scaffold; CMV promoter", "sequence-type": "addgene-full", "addgene_id": "121818", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -492742,7 +522665,9 @@ "plasmid_name": "pDONR221-CALM3(1of4)", "sequence-type": "addgene-full", "addgene_id": "166156", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166156.addgene-full.gb" }, @@ -492751,7 +522676,10 @@ "plasmid_name": "pDEST-actc1b-ccdb-mKate2", "sequence-type": "addgene-full", "addgene_id": "109731", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB3", @@ -492796,7 +522724,10 @@ "plasmid_name": "TFORF3139", "sequence-type": "addgene-full", "addgene_id": "144615", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -492856,7 +522787,6 @@ "plasmid_name": "p663-UBC-V5-BioID-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158163", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -492922,7 +522852,10 @@ "plasmid_name": "pLX304_zeo_mmFbxw7(res)", "sequence-type": "addgene-full", "addgene_id": "160106", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -492981,7 +522914,10 @@ "plasmid_name": "IO401: pMVP (R4-R3) eYFP open", "sequence-type": "addgene-full", "addgene_id": "121737", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -493016,7 +522952,6 @@ "plasmid_name": "pGEX6P1-DEST-Myc", "sequence-type": "addgene-full", "addgene_id": "119752", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -493061,7 +522996,10 @@ "plasmid_name": "pDONR223_DCAF8_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82947", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -493090,7 +523028,10 @@ "plasmid_name": "pAG426GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14276", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -493150,7 +523091,10 @@ "plasmid_name": "pMuLE ENTR CMV L3-L2", "sequence-type": "depositor-full", "addgene_id": "62092", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -493183,7 +523127,10 @@ "plasmid_name": "lenti-ATAD2-plx303", "sequence-type": "addgene-full", "addgene_id": "188635", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abc1048", + "https://www.ncbi.nlm.nih.gov/pubmed/34516843" + ], "kit": null, "att_sites": [ "attB1", @@ -493242,7 +523189,9 @@ "plasmid_name": "pMpGWB220", "sequence-type": "depositor-full", "addgene_id": "68611", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -493289,7 +523238,10 @@ "plasmid_name": "pCAG-All-in-one-hCascade", "sequence-type": "addgene-full", "addgene_id": "134919", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-13226-x", + "https://www.ncbi.nlm.nih.gov/pubmed/31811138" + ], "kit": null, "att_sites": [ "attB1", @@ -493332,7 +523284,10 @@ "plasmid_name": "SUN2delCC", "sequence-type": "addgene-full", "addgene_id": "130836", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "att_sites": [ "attB1", @@ -493367,7 +523322,10 @@ "plasmid_name": "pDONR223_HAVCR2_WT", "sequence-type": "addgene-full", "addgene_id": "82893", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -493396,7 +523354,10 @@ "plasmid_name": "R619-M68-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-529)-3C-His8-SBP", "sequence-type": "addgene-full", "addgene_id": "166019", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -493451,7 +523412,10 @@ "plasmid_name": "pSLIK 3xFLAG-XRCC6 zeo", "sequence-type": "addgene-full", "addgene_id": "192327", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -493516,7 +523480,10 @@ "plasmid_name": "pEX-CMV-SP-YFP-STM2(15-746) EF hand D80A", "sequence-type": "depositor-full", "addgene_id": "18864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "att_sites": [ "attB1", @@ -493559,7 +523526,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP6", "sequence-type": "addgene-full", "addgene_id": "158357", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -493604,7 +523574,10 @@ "plasmid_name": "GFP-hAgo2", "sequence-type": "addgene-full", "addgene_id": "11590", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb1334", + "https://www.ncbi.nlm.nih.gov/pubmed/16284622" + ], "kit": null, "att_sites": [ "attB1", @@ -493651,7 +523624,10 @@ "plasmid_name": "pENTR-flbio", "sequence-type": "depositor-full", "addgene_id": "30216", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1016959108", + "https://www.ncbi.nlm.nih.gov/pubmed/21415370" + ], "kit": null, "att_sites": [ "attL1", @@ -493677,7 +523653,10 @@ "plasmid_name": "pFPL-Gg", "sequence-type": "addgene-full", "addgene_id": "61653", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-05-14-0144-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/25390188" + ], "kit": null, "att_sites": [ "attR1", @@ -493722,7 +523701,10 @@ "plasmid_name": "pDONR221-SLC35A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161230", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -493753,7 +523735,10 @@ "plasmid_name": "pDONR223_SMAD2_p.D304G", "sequence-type": "addgene-full", "addgene_id": "81615", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -493785,7 +523770,10 @@ "plasmid_name": "pENTR D-TOPO-C3_6", "sequence-type": "depositor-full", "addgene_id": "60255", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -493816,7 +523804,10 @@ "plasmid_name": "actc1b-mKate2-2xFYVEhgs", "sequence-type": "addgene-full", "addgene_id": "109505", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -493858,7 +523849,10 @@ "plasmid_name": "DHX40", "sequence-type": "addgene-full", "addgene_id": "155540", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -493901,7 +523895,9 @@ "plasmid_name": "tre-stblHIF: pLenti-TRE-stblHIF-PGK-rtTAA-2A-Puro", "sequence-type": "addgene-full", "addgene_id": "177203", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.05.17.492374" + ], "kit": null, "att_sites": [ "attB1", @@ -493956,7 +523952,10 @@ "plasmid_name": "TFORF3399", "sequence-type": "addgene-full", "addgene_id": "144875", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -494016,7 +524015,10 @@ "plasmid_name": "pHAGE-ERBB2-L841V", "sequence-type": "addgene-full", "addgene_id": "116341", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -494070,7 +524072,10 @@ "plasmid_name": "pcDNA3_SP-GCGR-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194377", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -494127,7 +524132,10 @@ "plasmid_name": "pDONR221_SLC16A1", "sequence-type": "addgene-full", "addgene_id": "131934", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -494158,7 +524166,10 @@ "plasmid_name": "pAG413GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14238", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -494216,7 +524227,6 @@ "plasmid_name": "SYNJ1_BirA_Cterm", "sequence-type": "addgene-full", "addgene_id": "221522", - "references": [], "kit": null, "file": "data/addgene_plasmids/221522.addgene-full.gb" }, @@ -494225,7 +524235,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep57", "sequence-type": "addgene-full", "addgene_id": "136866", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -494270,7 +524283,10 @@ "plasmid_name": "pDONR223_KRAS_p.G13D", "sequence-type": "addgene-full", "addgene_id": "82808", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -494300,7 +524316,10 @@ "plasmid_name": "pEntry_HCoV-229E-Membrane", "sequence-type": "depositor-full", "addgene_id": "168966", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -494329,7 +524348,10 @@ "plasmid_name": "pHAGE-BRAF-G464V", "sequence-type": "addgene-full", "addgene_id": "116148", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -494384,7 +524406,10 @@ "plasmid_name": "pTone-gata2aECE-EGFP", "sequence-type": "addgene-full", "addgene_id": "132974", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132974.addgene-full.gb" }, @@ -494393,7 +524418,10 @@ "plasmid_name": "pDONR221-SLC16A5_STOP", "sequence-type": "depositor-full", "addgene_id": "161089", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -494424,7 +524452,10 @@ "plasmid_name": "pWPI-E2F3", "sequence-type": "addgene-full", "addgene_id": "114298", - "references": [], + "references": [ + "https://doi.org/10.4161/cc.25834", + "https://www.ncbi.nlm.nih.gov/pubmed/23907129" + ], "kit": null, "att_sites": [ "attB1", @@ -494482,7 +524513,9 @@ "plasmid_name": "pPB-cT3G-cERP2-MEIOC", "sequence-type": "addgene-full", "addgene_id": "222562", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -494528,7 +524561,10 @@ "plasmid_name": "pDONR223_SPAG8_WT", "sequence-type": "addgene-full", "addgene_id": "81848", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -494560,7 +524596,10 @@ "plasmid_name": "IF405: pMAGIC (R4-R3) NLS-Sa dCas9-NLS-p300core", "sequence-type": "addgene-full", "addgene_id": "121825", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -494595,7 +524634,10 @@ "plasmid_name": "pDONR221-SLC12A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161039", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -494626,7 +524668,9 @@ "plasmid_name": "p2K7bsdUBI-mCherry-STIM1", "sequence-type": "addgene-full", "addgene_id": "114178", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29176619" + ], "kit": null, "att_sites": [ "attB1", @@ -494690,7 +524734,10 @@ "plasmid_name": "KZ701: pMVP (L3-L2) AID + polyA", "sequence-type": "addgene-full", "addgene_id": "121791", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -494724,7 +524771,10 @@ "plasmid_name": "pME map2k2a_s219D", "sequence-type": "addgene-full", "addgene_id": "201058", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201820", + "https://www.ncbi.nlm.nih.gov/pubmed/37708300" + ], "kit": null, "att_sites": [ "attL1", @@ -494755,7 +524805,10 @@ "plasmid_name": "TFORF3152", "sequence-type": "addgene-full", "addgene_id": "144628", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -494815,7 +524868,6 @@ "plasmid_name": "Hs.KRAS4b K117N", "sequence-type": "depositor-full", "addgene_id": "83146", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -494841,7 +524893,10 @@ "plasmid_name": "pAD/CMV/V5-DEST-Cdc42-2G", "sequence-type": "depositor-full", "addgene_id": "68812", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21901", + "https://www.ncbi.nlm.nih.gov/pubmed/26912264" + ], "kit": null, "att_sites": [ "attB1", @@ -494885,7 +524940,10 @@ "plasmid_name": "pDONR221-HOXC5", "sequence-type": "addgene-full", "addgene_id": "101399", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -494914,7 +524972,10 @@ "plasmid_name": "pGW-RL-PA", "sequence-type": "depositor-full", "addgene_id": "78856", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "att_sites": [ "attR1", @@ -494970,7 +525031,10 @@ "plasmid_name": "pHAGE-EGFR-A763_Y764insFQEA", "sequence-type": "addgene-full", "addgene_id": "116233", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -495024,7 +525088,10 @@ "plasmid_name": "pLVX-UBE3B-BirA-Puro", "sequence-type": "addgene-full", "addgene_id": "107352", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "att_sites": [ "attB1", @@ -495074,7 +525141,10 @@ "plasmid_name": "TFORF3431", "sequence-type": "addgene-full", "addgene_id": "144907", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -495135,7 +525205,10 @@ "plasmid_name": "pAG414GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14408", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -495196,7 +525269,10 @@ "plasmid_name": "pMetOYC-Dest", "sequence-type": "addgene-full", "addgene_id": "105082", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.00470", + "https://www.ncbi.nlm.nih.gov/pubmed/27208310" + ], "kit": null, "att_sites": [ "attR1", @@ -495246,7 +525322,10 @@ "plasmid_name": "pDONR223_KIF2B_p.I119T", "sequence-type": "addgene-full", "addgene_id": "81487", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -495278,7 +525357,10 @@ "plasmid_name": "pDONR223_CCNG1_WT", "sequence-type": "addgene-full", "addgene_id": "81767", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -495310,7 +525392,6 @@ "plasmid_name": "pEF 3-CFP-2", "sequence-type": "depositor-full", "addgene_id": "20105", - "references": [], "kit": null, "file": "data/addgene_plasmids/20105.depositor-full.gb" }, @@ -495319,7 +525400,10 @@ "plasmid_name": "pDONR221-SLCO1A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161342", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -495350,7 +525434,10 @@ "plasmid_name": "pcDNA5FRT/TO-Strep/HA-UBE2Q2", "sequence-type": "addgene-full", "addgene_id": "124668", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "att_sites": [ "attB1", @@ -495394,7 +525481,9 @@ "plasmid_name": "p3E-IRES-H2A-mCherry-SV40-pA (JDW 1256)", "sequence-type": "addgene-full", "addgene_id": "224532", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL3", @@ -495436,7 +525525,10 @@ "plasmid_name": "pSLIK_hygro_p53(R280K)_V5", "sequence-type": "addgene-full", "addgene_id": "136540", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attB1", @@ -495503,7 +525595,9 @@ "plasmid_name": "pDONR221-SLC25A22", "sequence-type": "addgene-full", "addgene_id": "166210", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -495534,7 +525628,6 @@ "plasmid_name": "R777-E137 Hs.MTOR", "sequence-type": "depositor-full", "addgene_id": "70421", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -495564,7 +525657,10 @@ "plasmid_name": "pPV-EF1a-2xNLS-Cas7-Cas5-Cse1-iPA", "sequence-type": "addgene-full", "addgene_id": "134924", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-13226-x", + "https://www.ncbi.nlm.nih.gov/pubmed/31811138" + ], "kit": null, "att_sites": [ "attB1", @@ -495604,7 +525700,10 @@ "plasmid_name": "pAG424GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14392", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -495666,7 +525765,10 @@ "plasmid_name": "pMH-SFB", "sequence-type": "addgene-full", "addgene_id": "99391", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "att_sites": [ "attR1", @@ -495710,7 +525812,10 @@ "plasmid_name": "pMuLE Lenti Dest iRFP", "sequence-type": "depositor-full", "addgene_id": "62176", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR1", @@ -495771,7 +525876,10 @@ "plasmid_name": "TFORF3077", "sequence-type": "addgene-full", "addgene_id": "144553", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -495831,7 +525939,10 @@ "plasmid_name": "pDONR221-SLC20A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161176", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -495862,7 +525973,10 @@ "plasmid_name": "TFORF3291", "sequence-type": "addgene-full", "addgene_id": "144767", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -495922,7 +526036,10 @@ "plasmid_name": "actc1b-mKate2-rab42b", "sequence-type": "addgene-full", "addgene_id": "109643", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -495964,7 +526081,10 @@ "plasmid_name": "pENTR1A-PIK3CA E545K", "sequence-type": "addgene-full", "addgene_id": "180032", - "references": [], + "references": [ + "https://doi.org/10.1111/liv.13055", + "https://www.ncbi.nlm.nih.gov/pubmed/26716908" + ], "kit": null, "att_sites": [ "attL1", @@ -495989,7 +526109,10 @@ "plasmid_name": "pDONR221_SLC25A25", "sequence-type": "addgene-full", "addgene_id": "131992", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -496020,7 +526143,10 @@ "plasmid_name": "pLVX-CMV-Flag-PolB(K206A/K244A/T304I)-Puro", "sequence-type": "addgene-full", "addgene_id": "177145", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkz293", + "https://www.ncbi.nlm.nih.gov/pubmed/31287140" + ], "kit": null, "att_sites": [ "attB1", @@ -496070,7 +526196,10 @@ "plasmid_name": "Active Wnt16-V5", "sequence-type": "depositor-full", "addgene_id": "43825", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -496118,7 +526247,10 @@ "plasmid_name": "pKM596", "sequence-type": "depositor-full", "addgene_id": "8837", - "references": [], + "references": [ + "https://doi.org/10.1016/S0014-5793%2803%2900070-X", + "https://www.ncbi.nlm.nih.gov/pubmed/12606030" + ], "kit": null, "att_sites": [ "attR1", @@ -496168,7 +526300,10 @@ "plasmid_name": "pBZ-attBtxnl4b", "sequence-type": "depositor-full", "addgene_id": "18667", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "att_sites": [ "attB1", @@ -496206,7 +526341,10 @@ "plasmid_name": "TFORF3011", "sequence-type": "addgene-full", "addgene_id": "144487", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -496267,7 +526405,10 @@ "plasmid_name": "pENTR E2 HSPter-RPS5Ap-mito", "sequence-type": "addgene-full", "addgene_id": "163146", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.15041", + "https://www.ncbi.nlm.nih.gov/pubmed/33098708" + ], "kit": null, "att_sites": [ "attR3", @@ -496299,7 +526440,10 @@ "plasmid_name": "pDONR221-SLC38A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161296", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161296.addgene-full.gb" }, @@ -496308,7 +526452,10 @@ "plasmid_name": "pDONR223_PIK3CG_p.K973R", "sequence-type": "addgene-full", "addgene_id": "81628", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -496320,7 +526467,10 @@ "plasmid_name": "JUP_pLX307", "sequence-type": "addgene-full", "addgene_id": "98347", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -496380,7 +526530,10 @@ "plasmid_name": "pENTR-D-kcnj1a.1", "sequence-type": "addgene-full", "addgene_id": "173125", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -496413,7 +526566,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mNeonGreen-RfA", "sequence-type": "addgene-full", "addgene_id": "186382", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -496458,7 +526610,10 @@ "plasmid_name": "actc1b-mKate2-ARF6-DN", "sequence-type": "addgene-full", "addgene_id": "109538", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -496500,7 +526655,10 @@ "plasmid_name": "pdRBFC-NS1-YN", "sequence-type": "depositor-full", "addgene_id": "74723", - "references": [], + "references": [ + "https://doi.org/10.1016/j.virol.2015.08.023", + "https://www.ncbi.nlm.nih.gov/pubmed/26351203" + ], "kit": null, "att_sites": [ "attB1", @@ -496542,7 +526700,10 @@ "plasmid_name": "pDONR221_SLC13A1", "sequence-type": "addgene-full", "addgene_id": "131909", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -496574,7 +526735,10 @@ "plasmid_name": "TFORF3372", "sequence-type": "addgene-full", "addgene_id": "144848", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -496634,7 +526798,10 @@ "plasmid_name": "pDONR223_KEAP1_p.G333C", "sequence-type": "addgene-full", "addgene_id": "82835", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL2" @@ -496661,7 +526828,10 @@ "plasmid_name": "pCK082 desmaMCS:minprommCherry,exorh:mCerulean", "sequence-type": "addgene-full", "addgene_id": "200015", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attB1", @@ -496708,7 +526878,10 @@ "plasmid_name": "pDONR223_KEAP1_p.R470S", "sequence-type": "addgene-full", "addgene_id": "82781", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL2" @@ -496735,7 +526908,6 @@ "plasmid_name": "IDG_KCNS2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161654", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -496794,7 +526966,10 @@ "plasmid_name": "pDONR223_WISP2_p.R230L", "sequence-type": "addgene-full", "addgene_id": "81271", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -496826,7 +527001,10 @@ "plasmid_name": "pTol2CG2-QUASM1:mScarletNLS-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155124", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "att_sites": [ "attB1", @@ -496869,7 +527047,6 @@ "plasmid_name": "pLEX307-ACE2-puro", "sequence-type": "addgene-full", "addgene_id": "158448", - "references": [], "kit": null, "file": "data/addgene_plasmids/158448.addgene-full.gb" }, @@ -496878,7 +527055,6 @@ "plasmid_name": "pEF 1-PLI-4", "sequence-type": "depositor-full", "addgene_id": "20087", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -496909,7 +527085,10 @@ "plasmid_name": "pHAGE-CDK6", "sequence-type": "addgene-full", "addgene_id": "116725", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -496959,7 +527138,9 @@ "plasmid_name": "pMpGWB412", "sequence-type": "depositor-full", "addgene_id": "68677", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -497008,7 +527189,10 @@ "plasmid_name": "MSCV-N LMP2A", "sequence-type": "addgene-full", "addgene_id": "37963", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "att_sites": [ "attB1", @@ -497053,7 +527237,10 @@ "plasmid_name": "pAG305GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14210", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -497111,7 +527298,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198006", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -497177,7 +527363,10 @@ "plasmid_name": "MAC_C_TGON2", "sequence-type": "addgene-full", "addgene_id": "111677", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -497222,7 +527411,10 @@ "plasmid_name": "pLARRY-EGFP", "sequence-type": "addgene-full", "addgene_id": "140025", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw3381", + "https://www.ncbi.nlm.nih.gov/pubmed/31974159" + ], "kit": null, "att_sites": [ "attB1", @@ -497285,7 +527477,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-R4R3", "sequence-type": "depositor-full", "addgene_id": "113739", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -497319,7 +527514,6 @@ "plasmid_name": "pENTR CMVie-Lifeact-mTagBFP2 L1-R5", "sequence-type": "addgene-full", "addgene_id": "84388", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -497356,7 +527550,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-mir-50", "sequence-type": "depositor-full", "addgene_id": "46740", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -497397,7 +527594,6 @@ "plasmid_name": "p42Hyg 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58551", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -497454,7 +527650,10 @@ "plasmid_name": "pCPP5058", "sequence-type": "addgene-full", "addgene_id": "128710", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.04.037", + "https://www.ncbi.nlm.nih.gov/pubmed/29742421" + ], "kit": null, "att_sites": [ "attL1", @@ -497477,7 +527676,10 @@ "plasmid_name": "pDONR221_SLC22A31", "sequence-type": "addgene-full", "addgene_id": "132036", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -497508,7 +527710,6 @@ "plasmid_name": "pDONR221-olig2", "sequence-type": "addgene-full", "addgene_id": "192743", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -497539,7 +527740,10 @@ "plasmid_name": "pDONR221 Ub-NLRP1 L1218", "sequence-type": "addgene-full", "addgene_id": "166829", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attL1", @@ -497571,7 +527775,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag2_nostop", "sequence-type": "addgene-full", "addgene_id": "153174", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -497602,7 +527809,10 @@ "plasmid_name": "pDONR223 GABARAPL1 WT", "sequence-type": "addgene-full", "addgene_id": "123083", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -497631,7 +527841,10 @@ "plasmid_name": "PB-TRE3G-MYCN", "sequence-type": "addgene-full", "addgene_id": "104542", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2017.12.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29320761" + ], "kit": null, "att_sites": [ "attB1", @@ -497674,7 +527887,10 @@ "plasmid_name": "pPB-cT3G-cERP2-HOPX", "sequence-type": "addgene-full", "addgene_id": "192923", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -497720,7 +527936,6 @@ "plasmid_name": "pDEST17-DDX53", "sequence-type": "addgene-full", "addgene_id": "222240", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -497754,7 +527969,10 @@ "plasmid_name": "C232-E29: attB2r-mClover3-attB3", "sequence-type": "addgene-full", "addgene_id": "162906", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -497782,7 +528000,10 @@ "plasmid_name": "pDONR223_CDK4_WT", "sequence-type": "addgene-full", "addgene_id": "82297", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -497811,7 +528032,10 @@ "plasmid_name": "pAG413GPD-ccdB", "sequence-type": "addgene-full", "addgene_id": "14142", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -497871,7 +528095,10 @@ "plasmid_name": "Hygro-iDEST", "sequence-type": "depositor-full", "addgene_id": "75339", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2016.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/27133796" + ], "kit": null, "att_sites": [ "attR1", @@ -497926,7 +528153,10 @@ "plasmid_name": "Flag-HA-USP37", "sequence-type": "addgene-full", "addgene_id": "22602", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -497974,7 +528204,9 @@ "plasmid_name": "pMpGWB311", "sequence-type": "depositor-full", "addgene_id": "68639", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -498021,7 +528253,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.S218D_S222D", "sequence-type": "addgene-full", "addgene_id": "82177", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -498050,7 +528285,10 @@ "plasmid_name": "pSCR-GW", "sequence-type": "addgene-full", "addgene_id": "209374", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -498090,7 +528328,10 @@ "plasmid_name": "pMuLE_ENTR_CBF-tdTomato_L3-L2", "sequence-type": "addgene-full", "addgene_id": "113708", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "att_sites": [ "attL2", @@ -498127,7 +528368,10 @@ "plasmid_name": "pDONR221_SLC43A3", "sequence-type": "addgene-full", "addgene_id": "132202", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -498159,7 +528403,10 @@ "plasmid_name": "plIVMD164", "sequence-type": "addgene-full", "addgene_id": "160936", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2002650117", + "https://www.ncbi.nlm.nih.gov/pubmed/33037152" + ], "kit": null, "att_sites": [ "attB1", @@ -498207,7 +528454,10 @@ "plasmid_name": "pRATIO4212", "sequence-type": "addgene-full", "addgene_id": "141313", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -498260,7 +528510,10 @@ "plasmid_name": "pDONR221_SLC25A1", "sequence-type": "addgene-full", "addgene_id": "132299", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -498291,7 +528544,10 @@ "plasmid_name": "pHAGE-PIK3CA-M1043L", "sequence-type": "addgene-full", "addgene_id": "116511", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -498345,7 +528601,10 @@ "plasmid_name": "pCFJ2262A - [1-2] ENTR - Fluor - ce-mNeon (1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159851", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -498377,7 +528636,10 @@ "plasmid_name": "MAC_C_NTRK3", "sequence-type": "addgene-full", "addgene_id": "187796", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -498422,7 +528684,10 @@ "plasmid_name": "pMEcldn5bP1gfp", "sequence-type": "addgene-full", "addgene_id": "90124", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL1", @@ -498459,7 +528724,10 @@ "plasmid_name": "pLenti PGK OGT (Neo)", "sequence-type": "addgene-full", "addgene_id": "154289", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "att_sites": [ "attB1", @@ -498520,8 +528788,8 @@ "sequence-type": "addgene-full", "addgene_id": "22579", "references": [ - "https://doi.org/10.1038/nature09320", - "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" ], "kit": null, "att_sites": [ @@ -498567,7 +528835,10 @@ "plasmid_name": "pDONR221-LETMD1_STOP", "sequence-type": "addgene-full", "addgene_id": "161460", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -498598,7 +528869,10 @@ "plasmid_name": "pDONR207-SD3(1-50)", "sequence-type": "depositor-full", "addgene_id": "44587", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "att_sites": [ "attL1", @@ -498622,7 +528896,10 @@ "plasmid_name": "pDONR221_SLC45A4", "sequence-type": "addgene-full", "addgene_id": "132179", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -498653,7 +528930,6 @@ "plasmid_name": "His8:MBP-tev-Phe-e\u0394K-Flv", "sequence-type": "addgene-full", "addgene_id": "83395", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -498692,7 +528968,9 @@ "plasmid_name": "Shim_GlyRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202648", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "att_sites": [ "attB1", @@ -498731,7 +529009,10 @@ "plasmid_name": "MCAM-BirA*-HA", "sequence-type": "addgene-full", "addgene_id": "214472", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E23-06-0255", + "https://www.ncbi.nlm.nih.gov/pubmed/38117590" + ], "kit": null, "att_sites": [ "attB1", @@ -498794,7 +529075,6 @@ "plasmid_name": "IDG_KCNH6_OE_1", "sequence-type": "addgene-full", "addgene_id": "161669", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -498853,7 +529133,10 @@ "plasmid_name": "pDONR223 GABARAPL2 no-stop", "sequence-type": "addgene-full", "addgene_id": "123211", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -498882,7 +529165,6 @@ "plasmid_name": "pENTR-R2L3-cHA-IRESpuro-pA", "sequence-type": "addgene-full", "addgene_id": "139537", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -498922,7 +529204,10 @@ "plasmid_name": "pTol2CG2-ubi:QFGal4-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155119", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "att_sites": [ "attB1", @@ -498967,7 +529252,10 @@ "plasmid_name": "pJH55_pE12_hyCal9", "sequence-type": "addgene-full", "addgene_id": "160410", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -498998,7 +529286,6 @@ "plasmid_name": "R777-E163 Hs.PIK3CA", "sequence-type": "depositor-full", "addgene_id": "70447", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -499026,7 +529313,10 @@ "plasmid_name": "pHAGE-BMPR2", "sequence-type": "addgene-full", "addgene_id": "116718", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -499080,7 +529370,10 @@ "plasmid_name": "pMuLE ENTR 7SK L1-L4", "sequence-type": "depositor-full", "addgene_id": "62110", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -499111,7 +529404,6 @@ "plasmid_name": "pLEX307-TMPRSS11D-puro", "sequence-type": "addgene-full", "addgene_id": "158475", - "references": [], "kit": null, "file": "data/addgene_plasmids/158475.addgene-full.gb" }, @@ -499120,7 +529412,10 @@ "plasmid_name": "pDONR221_SLC2A5", "sequence-type": "addgene-full", "addgene_id": "132090", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -499151,7 +529446,10 @@ "plasmid_name": "PDEST-pSP172BSSPE-pFOGc::RfA-HA", "sequence-type": "addgene-full", "addgene_id": "186406", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -499189,7 +529487,10 @@ "plasmid_name": "R791-X12-636: His6-MBP-tev-Hs.NF1 ABC (2-1540)", "sequence-type": "addgene-full", "addgene_id": "159577", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA119.010934", + "https://www.ncbi.nlm.nih.gov/pubmed/31836666" + ], "kit": null, "att_sites": [ "attB1", @@ -499229,7 +529530,10 @@ "plasmid_name": "pHAGE-SGK3__KRT9", "sequence-type": "addgene-full", "addgene_id": "116837", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -499280,7 +529584,10 @@ "plasmid_name": "pLEX307 RFP", "sequence-type": "addgene-full", "addgene_id": "163976", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-20320-y", + "https://www.ncbi.nlm.nih.gov/pubmed/33420033" + ], "kit": null, "att_sites": [ "attB1", @@ -499344,7 +529651,10 @@ "plasmid_name": "pHAGE-RAC1", "sequence-type": "addgene-full", "addgene_id": "116783", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -499399,7 +529709,10 @@ "plasmid_name": "pHAGE-FAM134C-GFP", "sequence-type": "addgene-full", "addgene_id": "201927", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "att_sites": [ "attB1", @@ -499453,7 +529766,10 @@ "plasmid_name": "pHAGE-PIK3CA-D549N", "sequence-type": "addgene-full", "addgene_id": "116463", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -499507,7 +529823,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP7", "sequence-type": "addgene-full", "addgene_id": "141261", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -499536,7 +529855,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) TSPAN9", "sequence-type": "addgene-full", "addgene_id": "107502", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "att_sites": [ "attB1", @@ -499598,7 +529920,6 @@ "plasmid_name": "pLenti-PGK-c-myc-2A-CDK4(R24C)-GFP-Puro", "sequence-type": "addgene-full", "addgene_id": "83107", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -499664,7 +529985,10 @@ "plasmid_name": "pAS2-1-Brr2", "sequence-type": "addgene-full", "addgene_id": "99995", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "att_sites": [ "attB1", @@ -499711,7 +530035,10 @@ "plasmid_name": "R717-X57-566: His6-MBP-tev-Hs.RAF1(52-188)", "sequence-type": "addgene-full", "addgene_id": "159697", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.005669", + "https://www.ncbi.nlm.nih.gov/pubmed/30559287" + ], "kit": null, "att_sites": [ "attB1", @@ -499757,7 +530084,10 @@ "plasmid_name": "pDONR221-BSX", "sequence-type": "depositor-full", "addgene_id": "101410", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attB2", @@ -499790,7 +530120,10 @@ "plasmid_name": "hsp70:GalT-RFP", "sequence-type": "addgene-full", "addgene_id": "105966", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "att_sites": [ "attB1", @@ -499840,7 +530173,10 @@ "plasmid_name": "pExp_TRE:TAL14", "sequence-type": "depositor-full", "addgene_id": "51794", - "references": [], + "references": [ + "https://doi.org/10.1021/sb500263b", + "https://www.ncbi.nlm.nih.gov/pubmed/25369267" + ], "kit": null, "att_sites": [ "attB1", @@ -499888,7 +530224,10 @@ "plasmid_name": "pUC-DEST-R5R4", "sequence-type": "addgene-full", "addgene_id": "141055", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attR4", @@ -499928,8 +530267,8 @@ "sequence-type": "depositor-full", "addgene_id": "14420", "references": [ - "https://doi.org/10.1016/j.molcel.2014.05.008", - "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" ], "kit": { "name": "Yeast Gateway Kit", @@ -499992,7 +530331,10 @@ "plasmid_name": "pTO_CHMP3_LAP", "sequence-type": "addgene-full", "addgene_id": "101849", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3559", + "https://www.ncbi.nlm.nih.gov/pubmed/28604678" + ], "kit": null, "att_sites": [ "attB1", @@ -500040,7 +530382,6 @@ "plasmid_name": "R777-E109 Hs.IRS1", "sequence-type": "depositor-full", "addgene_id": "70393", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -500069,7 +530410,10 @@ "plasmid_name": "pHAGE-RAF1-N64K", "sequence-type": "addgene-full", "addgene_id": "116657", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -500123,7 +530467,10 @@ "plasmid_name": "pDL65", "sequence-type": "addgene-full", "addgene_id": "175891", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -500147,7 +530494,9 @@ "plasmid_name": "Gatewayp221oxCerulean-oxVenus", "sequence-type": "depositor-full", "addgene_id": "68047", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26142908" + ], "kit": null, "att_sites": [ "attL1", @@ -500179,7 +530528,10 @@ "plasmid_name": "pDONR223_B2M_p.D54N", "sequence-type": "addgene-full", "addgene_id": "81303", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -500211,7 +530563,10 @@ "plasmid_name": "IFNAR2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176938", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -500263,7 +530618,6 @@ "plasmid_name": "R777-E125 Hs.MAPK1", "sequence-type": "depositor-full", "addgene_id": "70409", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -500293,7 +530647,10 @@ "plasmid_name": "PB-TAC-OK+9MS", "sequence-type": "depositor-full", "addgene_id": "80482", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "att_sites": [ "attB1", @@ -500345,7 +530702,6 @@ "plasmid_name": "p3E_he1a:mCherry", "sequence-type": "addgene-full", "addgene_id": "113881", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -500382,7 +530738,10 @@ "plasmid_name": "pCFJ1320", "sequence-type": "depositor-full", "addgene_id": "84829", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.072", + "https://www.ncbi.nlm.nih.gov/pubmed/27374334" + ], "kit": null, "att_sites": [ "attB1", @@ -500417,7 +530776,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L1L2", "sequence-type": "addgene-full", "addgene_id": "113735", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -500451,7 +530813,10 @@ "plasmid_name": "pCM5.30", "sequence-type": "depositor-full", "addgene_id": "19399", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -500482,7 +530847,10 @@ "plasmid_name": "pDONR223-MET", "sequence-type": "addgene-full", "addgene_id": "23889", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -500514,7 +530882,6 @@ "plasmid_name": "pENTR223 CD147, open", "sequence-type": "addgene-full", "addgene_id": "149720", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -500544,7 +530911,10 @@ "plasmid_name": "pLX302 OAS1-V5 puro", "sequence-type": "addgene-full", "addgene_id": "158641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attB1", @@ -500605,7 +530975,10 @@ "plasmid_name": "MAC_N_LHX2", "sequence-type": "addgene-full", "addgene_id": "167776", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -500650,7 +531023,10 @@ "plasmid_name": "pDONR223_HRH4_p.S115L", "sequence-type": "addgene-full", "addgene_id": "81398", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -500682,7 +531058,10 @@ "plasmid_name": "pCM3.32", "sequence-type": "depositor-full", "addgene_id": "19403", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -500705,7 +531084,10 @@ "plasmid_name": "Flag-HA-CYLD", "sequence-type": "addgene-full", "addgene_id": "22544", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -500750,7 +531132,9 @@ "plasmid_name": "pDest-Sumo", "sequence-type": "addgene-full", "addgene_id": "106980", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29170489" + ], "kit": null, "att_sites": [ "attR1", @@ -500796,7 +531180,10 @@ "plasmid_name": "pDONR223_MAPK13_WT", "sequence-type": "addgene-full", "addgene_id": "82231", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -500825,7 +531212,10 @@ "plasmid_name": "pGL4_EGR1p-BC0130-luc2", "sequence-type": "addgene-full", "addgene_id": "214646", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -500868,7 +531258,10 @@ "plasmid_name": "pLenti-CMV-DNAJC5", "sequence-type": "addgene-full", "addgene_id": "205727", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.85837", + "https://www.ncbi.nlm.nih.gov/pubmed/36626307" + ], "kit": null, "att_sites": [ "attB1", @@ -500933,7 +531326,10 @@ "plasmid_name": "p5EyrkE1", "sequence-type": "addgene-full", "addgene_id": "90119", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -500964,7 +531360,10 @@ "plasmid_name": "pMH-Flag-HA", "sequence-type": "addgene-full", "addgene_id": "101766", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "att_sites": [ "attR1", @@ -501017,7 +531416,10 @@ "plasmid_name": "pENTR.CMV.ON", "sequence-type": "depositor-full", "addgene_id": "32687", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "att_sites": [ "attL1", @@ -501048,7 +531450,10 @@ "plasmid_name": "pDONR221_SLC35G2", "sequence-type": "addgene-full", "addgene_id": "132144", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -501079,7 +531484,6 @@ "plasmid_name": "MECP2 - P152L in pENTR", "sequence-type": "addgene-full", "addgene_id": "216596", - "references": [], "kit": null, "file": "data/addgene_plasmids/216596.addgene-full.gb" }, @@ -501088,7 +531492,10 @@ "plasmid_name": "pDONR_P4-P1R_5'arm_apobb.1", "sequence-type": "addgene-full", "addgene_id": "128662", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11259-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31366908" + ], "kit": null, "att_sites": [ "attL4", @@ -501119,7 +531526,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF3b", "sequence-type": "addgene-full", "addgene_id": "168854", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -501148,7 +531558,10 @@ "plasmid_name": "TFORF2990", "sequence-type": "addgene-full", "addgene_id": "144466", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -501208,7 +531621,10 @@ "plasmid_name": "pME-mKate2-GPI-pA", "sequence-type": "addgene-full", "addgene_id": "109542", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -501241,7 +531657,10 @@ "plasmid_name": "pDONR223_NRAS_p.Q61R", "sequence-type": "addgene-full", "addgene_id": "81652", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -501273,7 +531692,9 @@ "plasmid_name": "pDONR221-NUDT5", "sequence-type": "addgene-full", "addgene_id": "219954", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-4644671/v1" + ], "kit": null, "att_sites": [ "attL1", @@ -501304,7 +531725,6 @@ "plasmid_name": "p667-UBC-NUAK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189910", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -501370,7 +531790,9 @@ "plasmid_name": "pUB-nHyPer2 (NLS:HyPer2:NLS)", "sequence-type": "addgene-full", "addgene_id": "84730", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "att_sites": [ "attB1", @@ -501408,7 +531830,10 @@ "plasmid_name": "pDONR221-SLC25A52_STOP", "sequence-type": "addgene-full", "addgene_id": "161197", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -501439,7 +531864,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hSFRP1(aa53-166)", "sequence-type": "addgene-full", "addgene_id": "189544", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -501489,7 +531913,10 @@ "plasmid_name": "pEBTet-SNAP-STIL", "sequence-type": "addgene-full", "addgene_id": "136795", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -501536,7 +531963,10 @@ "plasmid_name": "pDP085", "sequence-type": "addgene-full", "addgene_id": "198425", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms15120", + "https://www.ncbi.nlm.nih.gov/pubmed/28513600" + ], "kit": null, "att_sites": [ "attB1", @@ -501581,7 +532011,10 @@ "plasmid_name": "pEBTet-SNAP-Cep70", "sequence-type": "addgene-full", "addgene_id": "136821", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -501628,7 +532061,10 @@ "plasmid_name": "pDONR221_SLC17A9", "sequence-type": "addgene-full", "addgene_id": "131973", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -501659,7 +532095,10 @@ "plasmid_name": "TFORF3310", "sequence-type": "addgene-full", "addgene_id": "144786", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -501719,7 +532158,10 @@ "plasmid_name": "pHAGE-EGFR-T263I", "sequence-type": "addgene-full", "addgene_id": "116306", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -501773,7 +532215,10 @@ "plasmid_name": "actc1b-mKate2-rab3db", "sequence-type": "addgene-full", "addgene_id": "109639", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -501815,7 +532260,10 @@ "plasmid_name": "pLX304_zeo_eGFP", "sequence-type": "addgene-full", "addgene_id": "160095", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -501878,7 +532326,10 @@ "plasmid_name": "pDONR223_RASA1_p.R913Q", "sequence-type": "addgene-full", "addgene_id": "81529", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -501910,7 +532361,10 @@ "plasmid_name": "pDONR223_STK11_p.G56V", "sequence-type": "addgene-full", "addgene_id": "82760", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -501939,7 +532393,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP6", "sequence-type": "addgene-full", "addgene_id": "154405", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -501999,7 +532456,9 @@ "plasmid_name": "pENTR221-BNT162b2\u0394UTR", "sequence-type": "addgene-full", "addgene_id": "171214", - "references": [], + "references": [ + "https://doi.org/10.1101/2021.04.27.21256151" + ], "kit": null, "att_sites": [ "attL1", @@ -502029,7 +532488,10 @@ "plasmid_name": "pDONR223_ARAF_WT", "sequence-type": "addgene-full", "addgene_id": "82900", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82900.addgene-full.gb" }, @@ -502038,7 +532500,6 @@ "plasmid_name": "pDONR221-SARS-CoV-2 S1 RBD", "sequence-type": "addgene-full", "addgene_id": "167013", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -502068,7 +532529,10 @@ "plasmid_name": "KZ001: pMVP (L3-L2) P2A-eYFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121770", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -502106,7 +532570,10 @@ "plasmid_name": "p8194 MSCV-P C-FlagHA 31E7 R77S", "sequence-type": "addgene-full", "addgene_id": "163308", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "att_sites": [ "attB1", @@ -502152,7 +532619,10 @@ "plasmid_name": "pAFMW-Gwpep(Dm)-Nbr[C399-625]", "sequence-type": "addgene-full", "addgene_id": "188592", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -502182,7 +532652,6 @@ "plasmid_name": "pFRT-TODestFLAGHAhTTP", "sequence-type": "depositor-full", "addgene_id": "48738", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -502227,7 +532696,10 @@ "plasmid_name": "pHAGE-EGFR-G312W", "sequence-type": "addgene-full", "addgene_id": "116249", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -502281,7 +532753,10 @@ "plasmid_name": "pSAM2_mCherry_Baf60c", "sequence-type": "addgene-full", "addgene_id": "72691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -502343,7 +532818,10 @@ "plasmid_name": "TFORF3053", "sequence-type": "addgene-full", "addgene_id": "144529", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -502403,7 +532881,6 @@ "plasmid_name": "pCWXPGR-pTF-NT3", "sequence-type": "addgene-full", "addgene_id": "114279", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -502463,7 +532940,10 @@ "plasmid_name": "pDONR221-SLC6A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161338", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -502494,7 +532974,10 @@ "plasmid_name": "pDONR223_HRH4_WT", "sequence-type": "addgene-full", "addgene_id": "81786", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -502526,7 +533009,10 @@ "plasmid_name": "pPB-MPP8-1\u2013729_Flag2-Blast", "sequence-type": "addgene-full", "addgene_id": "175040", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-23308-4", + "https://www.ncbi.nlm.nih.gov/pubmed/34031396" + ], "kit": null, "file": "data/addgene_plasmids/175040.addgene-full.gb" }, @@ -502535,7 +533021,10 @@ "plasmid_name": "pDONR221 Brx1", "sequence-type": "depositor-full", "addgene_id": "63741", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -502566,7 +533055,10 @@ "plasmid_name": "pEntry_MERS-CoV-ORF8b", "sequence-type": "depositor-full", "addgene_id": "168834", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -502595,7 +533087,10 @@ "plasmid_name": "pHAGE-BRAF-T599Ifs*13", "sequence-type": "addgene-full", "addgene_id": "116132", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -502650,7 +533145,10 @@ "plasmid_name": "pMOS013E: Entry vector for: mito-roGFP2-Grx1 glutathione redox sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163073", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attL1", @@ -502686,7 +533184,10 @@ "plasmid_name": "actc1b-TCAP-mKate2", "sequence-type": "addgene-full", "addgene_id": "109496", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -502726,7 +533227,10 @@ "plasmid_name": "pMXs-Ascl1", "sequence-type": "addgene-full", "addgene_id": "134671", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199723", + "https://www.ncbi.nlm.nih.gov/pubmed/35748297" + ], "kit": null, "att_sites": [ "attB1", @@ -502754,7 +533258,10 @@ "plasmid_name": "pLenti-PGK-Puro-TK-NLS-mTurq2-PCNA", "sequence-type": "addgene-full", "addgene_id": "118617", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "att_sites": [ "attB1", @@ -502821,7 +533328,10 @@ "plasmid_name": "TFORF3176", "sequence-type": "addgene-full", "addgene_id": "144652", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -502881,7 +533391,10 @@ "plasmid_name": "pDONR221-SLC6A15_STOP", "sequence-type": "addgene-full", "addgene_id": "161043", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161043.addgene-full.gb" }, @@ -502890,7 +533403,10 @@ "plasmid_name": "pDONR-IAA6", "sequence-type": "depositor-full", "addgene_id": "83869", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -502921,7 +533437,10 @@ "plasmid_name": "pAV hTERTsh", "sequence-type": "addgene-full", "addgene_id": "111380", - "references": [], + "references": [ + "https://doi.org/10.3390/genes7080046", + "https://www.ncbi.nlm.nih.gov/pubmed/27537914" + ], "kit": null, "att_sites": [ "attB1", @@ -502951,7 +533470,10 @@ "plasmid_name": "Lenti-4XPRE-GFP", "sequence-type": "addgene-full", "addgene_id": "206170", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "att_sites": [ "attB1", @@ -503013,7 +533535,10 @@ "plasmid_name": "CMYA5T2/pDEST15", "sequence-type": "addgene-full", "addgene_id": "98109", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "att_sites": [ "attB1", @@ -503049,7 +533574,9 @@ "plasmid_name": "p3e tdTomato", "sequence-type": "addgene-full", "addgene_id": "188700", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "file": "data/addgene_plasmids/188700.addgene-full.gb" }, @@ -503058,7 +533585,10 @@ "plasmid_name": "pFRT-TODestFLAGHAhFMRPiso1I304N", "sequence-type": "depositor-full", "addgene_id": "48692", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11737", + "https://www.ncbi.nlm.nih.gov/pubmed/23235829" + ], "kit": null, "att_sites": [ "attB1", @@ -503103,7 +533633,10 @@ "plasmid_name": "pGWB401", "sequence-type": "depositor-full", "addgene_id": "74795", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -503150,7 +533683,6 @@ "plasmid_name": "R777-E059 Hs.EIF4EBP3", "sequence-type": "depositor-full", "addgene_id": "70343", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -503178,7 +533710,10 @@ "plasmid_name": "pYPQ143", "sequence-type": "depositor-full", "addgene_id": "69295", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL2", @@ -503210,7 +533745,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp6", "sequence-type": "addgene-full", "addgene_id": "168869", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -503239,7 +533777,10 @@ "plasmid_name": "pGWB533", "sequence-type": "depositor-full", "addgene_id": "74872", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -503285,7 +533826,10 @@ "plasmid_name": "VanGlow-RR", "sequence-type": "depositor-full", "addgene_id": "83343", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.01.014", + "https://www.ncbi.nlm.nih.gov/pubmed/28245922" + ], "kit": null, "att_sites": [ "attR1", @@ -503317,7 +533861,10 @@ "plasmid_name": "pENTR PKAKTRn-Clover", "sequence-type": "addgene-full", "addgene_id": "177199", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2022.02.006", + "https://www.ncbi.nlm.nih.gov/pubmed/35316656" + ], "kit": null, "att_sites": [ "attL1", @@ -503343,7 +533890,10 @@ "plasmid_name": "TFORF3418", "sequence-type": "addgene-full", "addgene_id": "144894", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -503403,7 +533953,10 @@ "plasmid_name": "pDONR223-ZNF423", "sequence-type": "addgene-full", "addgene_id": "88083", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -503432,7 +533985,10 @@ "plasmid_name": "actc1b-mKate2-rab18b", "sequence-type": "addgene-full", "addgene_id": "109604", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -503472,7 +534028,10 @@ "plasmid_name": "TFORF3244", "sequence-type": "addgene-full", "addgene_id": "144720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -503532,7 +534091,10 @@ "plasmid_name": "pCLX-R4-DEST-R2", "sequence-type": "depositor-full", "addgene_id": "45956", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-61779-095-9_8", + "https://www.ncbi.nlm.nih.gov/pubmed/21590398" + ], "kit": null, "att_sites": [ "attR2", @@ -503583,7 +534145,10 @@ "plasmid_name": "JDW 763 (pCS2-EYFP-hsKRAS4B-WT)", "sequence-type": "addgene-full", "addgene_id": "156408", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -503628,7 +534193,10 @@ "plasmid_name": "IH001: pMVP (L5-L4) HA epitope tag", "sequence-type": "addgene-full", "addgene_id": "121699", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -503661,7 +534229,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 C264A", "sequence-type": "addgene-full", "addgene_id": "129297", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attB1", @@ -503705,7 +534276,10 @@ "plasmid_name": "pCFJ326 - operon for germline expression", "sequence-type": "depositor-full", "addgene_id": "34875", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attL3", @@ -503739,7 +534313,10 @@ "plasmid_name": "pDONR223_CTCF_p.P552S", "sequence-type": "addgene-full", "addgene_id": "81514", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -503771,7 +534348,10 @@ "plasmid_name": "pDONR221-SLC22A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161131", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -503802,7 +534382,6 @@ "plasmid_name": "R777-E340 Hs.STK4-nostop", "sequence-type": "depositor-full", "addgene_id": "70624", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -503830,7 +534409,10 @@ "plasmid_name": "pAG423GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14197", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -503893,7 +534475,10 @@ "plasmid_name": "p21-M694V-MEFV", "sequence-type": "addgene-full", "addgene_id": "134703", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "att_sites": [ "attB1", @@ -503950,7 +534535,6 @@ "plasmid_name": "Ad-FOXA2", "sequence-type": "addgene-full", "addgene_id": "131581", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -503986,7 +534570,10 @@ "plasmid_name": "TFORF3535", "sequence-type": "depositor-full", "addgene_id": "145011", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -504046,7 +534633,10 @@ "plasmid_name": "pSAM2_mCherry_GFP", "sequence-type": "addgene-full", "addgene_id": "78172", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -504112,7 +534702,10 @@ "plasmid_name": "pDONR221-Embigin", "sequence-type": "addgene-full", "addgene_id": "221417", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -504143,7 +534736,10 @@ "plasmid_name": "pHAGE-EGFR-L838M", "sequence-type": "addgene-full", "addgene_id": "116274", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -504197,7 +534793,10 @@ "plasmid_name": "PHF6", "sequence-type": "addgene-full", "addgene_id": "155821", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -504240,7 +534839,10 @@ "plasmid_name": "pDONR223-ZNF581", "sequence-type": "addgene-full", "addgene_id": "88157", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -504269,7 +534871,10 @@ "plasmid_name": "TFORF3464", "sequence-type": "addgene-full", "addgene_id": "144940", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -504329,7 +534934,10 @@ "plasmid_name": "NUDT16L1", "sequence-type": "addgene-full", "addgene_id": "155795", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -504372,7 +534980,10 @@ "plasmid_name": "CPSF1", "sequence-type": "addgene-full", "addgene_id": "155475", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -504415,7 +535026,10 @@ "plasmid_name": "TFORF3038", "sequence-type": "addgene-full", "addgene_id": "144514", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -504475,7 +535089,10 @@ "plasmid_name": "pEntry_HCoV-NL63-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168926", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -504504,7 +535121,6 @@ "plasmid_name": "R777-E213 Hs.RAF1", "sequence-type": "depositor-full", "addgene_id": "70497", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -504532,7 +535148,10 @@ "plasmid_name": "pHAGE-BRAF-S467L", "sequence-type": "addgene-full", "addgene_id": "116194", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -504588,7 +535207,10 @@ "plasmid_name": "pDONR223_WIPI1_WT", "sequence-type": "addgene-full", "addgene_id": "81894", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -504620,7 +535242,10 @@ "plasmid_name": "p{ie1-DsRed::FRT-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182191", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -504663,7 +535288,10 @@ "plasmid_name": "pLX302-MKP5-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87770", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "att_sites": [ "attB1", @@ -504724,7 +535352,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-DSTYK _IDG-K", "sequence-type": "addgene-full", "addgene_id": "158182", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -504790,7 +535417,10 @@ "plasmid_name": "JT601: pMVP/SB/mCherry-DEST", "sequence-type": "addgene-full", "addgene_id": "121862", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -504832,7 +535462,10 @@ "plasmid_name": "MEK1 (S218D,S222D)-pcw107", "sequence-type": "addgene-full", "addgene_id": "64604", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attB1", @@ -504890,7 +535523,9 @@ "plasmid_name": "pHAGE pGK hNLRP3-mNG", "sequence-type": "addgene-full", "addgene_id": "218643", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218643.addgene-full.gb" }, @@ -504899,7 +535534,10 @@ "plasmid_name": "pDD372", "sequence-type": "addgene-full", "addgene_id": "91824", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "att_sites": [ "attL1", @@ -504930,7 +535568,10 @@ "plasmid_name": "pDONR223_CHD2_WT", "sequence-type": "addgene-full", "addgene_id": "81768", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -504962,7 +535603,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBE2QL1-GFP", "sequence-type": "addgene-full", "addgene_id": "124667", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "att_sites": [ "attB1", @@ -505008,7 +535652,10 @@ "plasmid_name": "pDONR223_S100A13_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82975", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -505037,7 +535684,10 @@ "plasmid_name": "pMartini Gate C R2-R1", "sequence-type": "depositor-full", "addgene_id": "36436", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "att_sites": [ "attR1", @@ -505076,7 +535726,10 @@ "plasmid_name": "pDONR223_PTPN12_p.G99R", "sequence-type": "addgene-full", "addgene_id": "81488", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -505108,7 +535761,10 @@ "plasmid_name": "IX203: pMVP (L5-L4) V5 epitope tag", "sequence-type": "addgene-full", "addgene_id": "121705", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", @@ -505141,7 +535797,10 @@ "plasmid_name": "pLSLGFP", "sequence-type": "depositor-full", "addgene_id": "51494", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "att_sites": [ "attB1", @@ -505195,7 +535854,10 @@ "plasmid_name": "TFORF3432", "sequence-type": "addgene-full", "addgene_id": "144908", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -505256,7 +535918,10 @@ "plasmid_name": "pAD/CMV/V5-DEST-Rac1-2G", "sequence-type": "depositor-full", "addgene_id": "66112", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.09.002", + "https://www.ncbi.nlm.nih.gov/pubmed/26439400" + ], "kit": null, "att_sites": [ "attB1", @@ -505300,7 +535965,10 @@ "plasmid_name": "TFORF3151", "sequence-type": "addgene-full", "addgene_id": "144627", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -505360,7 +536028,9 @@ "plasmid_name": "pMpGWB229", "sequence-type": "depositor-full", "addgene_id": "68620", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR2" @@ -505406,7 +536076,10 @@ "plasmid_name": "p3E-OSBP", "sequence-type": "depositor-full", "addgene_id": "67677", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attL3", @@ -505437,7 +536110,10 @@ "plasmid_name": "p3E-rab3aa", "sequence-type": "addgene-full", "addgene_id": "109703", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -505468,7 +536144,10 @@ "plasmid_name": "pME rras_Q61R", "sequence-type": "addgene-full", "addgene_id": "201057", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201820", + "https://www.ncbi.nlm.nih.gov/pubmed/37708300" + ], "kit": null, "att_sites": [ "attL1", @@ -505499,7 +536178,10 @@ "plasmid_name": "pAC1825_pCR8-dCasRx-RBM38", "sequence-type": "addgene-full", "addgene_id": "118662", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -505533,7 +536215,10 @@ "plasmid_name": "p3E-DrCavin1a", "sequence-type": "addgene-full", "addgene_id": "194291", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "att_sites": [ "attL3", @@ -505564,7 +536249,10 @@ "plasmid_name": "ETS2_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177005", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -505620,7 +536308,9 @@ "plasmid_name": "pDONR221-DDX5\u0394PrD", "sequence-type": "addgene-full", "addgene_id": "166164", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -505651,7 +536341,10 @@ "plasmid_name": "pENTR-L5-LucmiR-EGFP-L2", "sequence-type": "depositor-full", "addgene_id": "32587", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "att_sites": [ "attL2", @@ -505690,7 +536383,10 @@ "plasmid_name": "pENTR223-BPLF1_1001-2000", "sequence-type": "addgene-full", "addgene_id": "198584", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -505719,7 +536415,10 @@ "plasmid_name": "pAG424GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14247", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -505779,7 +536478,6 @@ "plasmid_name": "pgLAP2", "sequence-type": "depositor-full", "addgene_id": "19703", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -505828,7 +536526,10 @@ "plasmid_name": "pDONR223_HERPUD2_p.P46L", "sequence-type": "addgene-full", "addgene_id": "81413", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -505860,7 +536561,10 @@ "plasmid_name": "pEPYCeGM0001", "sequence-type": "addgene-full", "addgene_id": "196141", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "att_sites": [ "attL1", @@ -505884,7 +536588,9 @@ "plasmid_name": "pENTR1a-tagRFP-KDEL", "sequence-type": "addgene-full", "addgene_id": "114177", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29176619" + ], "kit": null, "att_sites": [ "attL1", @@ -505909,7 +536615,10 @@ "plasmid_name": "pDONR221-kcnk10b", "sequence-type": "addgene-full", "addgene_id": "208994", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -505940,7 +536649,10 @@ "plasmid_name": "pYPQ233-STU", "sequence-type": "addgene-full", "addgene_id": "138111", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL1", @@ -505971,7 +536683,10 @@ "plasmid_name": "pWPI-E2F2", "sequence-type": "addgene-full", "addgene_id": "114297", - "references": [], + "references": [ + "https://doi.org/10.4161/cc.25834", + "https://www.ncbi.nlm.nih.gov/pubmed/23907129" + ], "kit": null, "att_sites": [ "attB1", @@ -506029,7 +536744,10 @@ "plasmid_name": "pHAGE-BRAF-G464R", "sequence-type": "addgene-full", "addgene_id": "116147", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -506085,8 +536803,8 @@ "sequence-type": "depositor-full", "addgene_id": "22770", "references": [ - "https://doi.org/10.1016/j.mimet.2016.12.017", - "https://www.ncbi.nlm.nih.gov/pubmed/28017692" + "https://doi.org/10.1158/0008-5472.CAN-07-1590", + "https://www.ncbi.nlm.nih.gov/pubmed/17909066" ], "kit": null, "att_sites": [ @@ -506138,7 +536856,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep290", "sequence-type": "addgene-full", "addgene_id": "136854", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -506180,7 +536901,10 @@ "plasmid_name": "pDONR221_MPC1", "sequence-type": "addgene-full", "addgene_id": "131906", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131906.addgene-full.gb" }, @@ -506189,7 +536913,10 @@ "plasmid_name": "pHAGE-ESR1-Y537N", "sequence-type": "addgene-full", "addgene_id": "116373", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -506241,7 +536968,10 @@ "plasmid_name": "TFORF3371", "sequence-type": "addgene-full", "addgene_id": "144847", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -506301,7 +537031,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp8", "sequence-type": "addgene-full", "addgene_id": "168821", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -506330,7 +537063,10 @@ "plasmid_name": "TFORF2937", "sequence-type": "addgene-full", "addgene_id": "144413", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -506390,7 +537126,6 @@ "plasmid_name": "UBI10:RFP-RabG3B-DN", "sequence-type": "addgene-full", "addgene_id": "102370", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -506430,7 +537165,10 @@ "plasmid_name": "actc1b-mKate2-ARF6", "sequence-type": "addgene-full", "addgene_id": "109537", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -506472,7 +537210,10 @@ "plasmid_name": "pCMV-IRES-Renilla Luciferase-IRES-Gateway-Firefly Luciferase (pIRIGF)", "sequence-type": "addgene-full", "addgene_id": "101139", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attR1", @@ -506512,7 +537253,10 @@ "plasmid_name": "pDONR223_IDH2_p.I139F", "sequence-type": "addgene-full", "addgene_id": "81627", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -506544,7 +537288,6 @@ "plasmid_name": "p426 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58548", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -506597,7 +537340,10 @@ "plasmid_name": "pDONR221-SLC35F1_STOP", "sequence-type": "addgene-full", "addgene_id": "161299", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -506628,7 +537374,10 @@ "plasmid_name": "pDONR223_MTM1_WT", "sequence-type": "addgene-full", "addgene_id": "81908", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -506660,7 +537409,10 @@ "plasmid_name": "5'-3xFLAG Camta2+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212049", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -506700,7 +537452,10 @@ "plasmid_name": "hDAGLb-V5", "sequence-type": "addgene-full", "addgene_id": "87677", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.biochem.6b00221", + "https://www.ncbi.nlm.nih.gov/pubmed/27115711" + ], "kit": null, "att_sites": [ "attB1", @@ -506749,7 +537504,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP14", "sequence-type": "addgene-full", "addgene_id": "158365", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -506794,7 +537552,10 @@ "plasmid_name": "TFORF3012", "sequence-type": "addgene-full", "addgene_id": "144488", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -506854,7 +537615,10 @@ "plasmid_name": "pcDNA pDEST40 Cas9-POLD3", "sequence-type": "addgene-full", "addgene_id": "183194", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "att_sites": [ "attB1", @@ -506908,7 +537672,10 @@ "plasmid_name": "pAG305GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14209", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -506967,7 +537734,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-EGFR NLS", "sequence-type": "addgene-full", "addgene_id": "192315", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attL1", @@ -507003,7 +537773,10 @@ "plasmid_name": "TFORF3292", "sequence-type": "addgene-full", "addgene_id": "144768", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -507063,7 +537836,10 @@ "plasmid_name": "pENTR-ZmIAA9", "sequence-type": "addgene-full", "addgene_id": "188433", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "att_sites": [ "attL1", @@ -507094,7 +537870,10 @@ "plasmid_name": "pDONR221-SLC23A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161179", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -507125,7 +537904,10 @@ "plasmid_name": "pJA245", "sequence-type": "depositor-full", "addgene_id": "21506", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "att_sites": [ "attL4", @@ -507158,7 +537940,10 @@ "plasmid_name": "pEV1.02", "sequence-type": "depositor-full", "addgene_id": "37487", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.047654", + "https://www.ncbi.nlm.nih.gov/pubmed/20335358" + ], "kit": null, "att_sites": [ "attB1", @@ -507193,7 +537978,10 @@ "plasmid_name": "pENTR D-TOPO-C3_18", "sequence-type": "depositor-full", "addgene_id": "60264", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -507224,7 +538012,10 @@ "plasmid_name": "pYPQ230-RVR", "sequence-type": "addgene-full", "addgene_id": "108861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "att_sites": [ "attL1", @@ -507256,7 +538047,10 @@ "plasmid_name": "TFORF3085", "sequence-type": "addgene-full", "addgene_id": "144561", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144561.addgene-full.gb" }, @@ -507265,7 +538059,6 @@ "plasmid_name": "Hs.NRAS G13D", "sequence-type": "depositor-full", "addgene_id": "83177", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -507290,7 +538083,10 @@ "plasmid_name": "pDONR221-SLC4A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161370", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -507320,7 +538116,10 @@ "plasmid_name": "pDEST26 Ago2 4A", "sequence-type": "depositor-full", "addgene_id": "59907", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2013.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/23603119" + ], "kit": null, "att_sites": [ "attB1", @@ -507369,7 +538168,10 @@ "plasmid_name": "pDONR223_TRAF3_WT", "sequence-type": "addgene-full", "addgene_id": "81755", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -507381,7 +538183,10 @@ "plasmid_name": "pDONR221-ZNF527", "sequence-type": "depositor-full", "addgene_id": "101447", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -507412,7 +538217,10 @@ "plasmid_name": "HD301: pMVP (R4-R3) \u03b2gal", "sequence-type": "addgene-full", "addgene_id": "121738", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -507443,7 +538251,10 @@ "plasmid_name": "pDONR221-SLC17A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161090", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -507474,7 +538285,10 @@ "plasmid_name": "pDONR223_EXOSC4_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82948", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -507503,7 +538317,10 @@ "plasmid_name": "TFORF3459", "sequence-type": "addgene-full", "addgene_id": "144935", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144935.addgene-full.gb" }, @@ -507512,7 +538329,10 @@ "plasmid_name": "pHAGE-BRAF-T599I", "sequence-type": "addgene-full", "addgene_id": "116201", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -507567,7 +538387,10 @@ "plasmid_name": "pMXs-hu-N-Myc", "sequence-type": "depositor-full", "addgene_id": "50772", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "att_sites": [ "attB1", @@ -507595,7 +538418,10 @@ "plasmid_name": "pDONR221_SLC15A1", "sequence-type": "addgene-full", "addgene_id": "131874", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -507626,7 +538452,10 @@ "plasmid_name": "TFORF3205", "sequence-type": "addgene-full", "addgene_id": "144681", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -507686,7 +538515,9 @@ "plasmid_name": "pDONR221-CLF2(2of3)", "sequence-type": "addgene-full", "addgene_id": "166159", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -507717,7 +538548,6 @@ "plasmid_name": "R777-E126 Hs.MAPK1-nostop", "sequence-type": "depositor-full", "addgene_id": "70410", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -507747,7 +538577,10 @@ "plasmid_name": "pMuLE ENTR CMV mCherry R4-R3", "sequence-type": "depositor-full", "addgene_id": "62147", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -507783,7 +538616,10 @@ "plasmid_name": "pInducer-FRA1", "sequence-type": "addgene-full", "addgene_id": "192267", - "references": [], + "references": [ + "https://doi.org/10.1007/s00018-022-04638-y", + "https://www.ncbi.nlm.nih.gov/pubmed/36534167" + ], "kit": null, "att_sites": [ "attB1", @@ -507836,7 +538672,10 @@ "plasmid_name": "pNOC-NLUC", "sequence-type": "addgene-full", "addgene_id": "98141", - 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"references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -508031,7 +538878,10 @@ "plasmid_name": "A1-LCD-30G+30S", "sequence-type": "addgene-full", "addgene_id": "178684", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -508066,7 +538916,9 @@ "plasmid_name": "pPB-cT3G-cERP2-RB1", "sequence-type": "addgene-full", "addgene_id": "222550", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -508112,7 +538964,9 @@ "plasmid_name": "pME-ERT2-Cre-ERT2", "sequence-type": "addgene-full", "addgene_id": "82587", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24643048" + ], "kit": null, "att_sites": [ "attL1", @@ -508156,7 +539010,10 @@ "plasmid_name": "pDONR221-SLC2A11_STOP", "sequence-type": "depositor-full", "addgene_id": "161245", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -508187,7 +539044,10 @@ "plasmid_name": "pSGE_240_pAGW_V5", "sequence-type": "depositor-full", "addgene_id": "71188", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attR1", @@ -508221,7 +539081,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep72", "sequence-type": "addgene-full", "addgene_id": "136869", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -508263,7 +539126,6 @@ "plasmid_name": "Hs.KRAS4b C185S", "sequence-type": "depositor-full", "addgene_id": "83139", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -508289,7 +539151,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12F", "sequence-type": "addgene-full", "addgene_id": "82807", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -508319,7 +539184,9 @@ "plasmid_name": "pLV-EgI-NeoR", "sequence-type": "addgene-full", "addgene_id": "207175", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "att_sites": [ "attR1", @@ -508376,7 +539243,10 @@ "plasmid_name": "pcDNA3_GLP1R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194378", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -508433,7 +539303,9 @@ "plasmid_name": "pMpGWB123", "sequence-type": "depositor-full", "addgene_id": "68577", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -508481,7 +539353,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-N-mEGFP", "sequence-type": "addgene-full", "addgene_id": "223949", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -508533,7 +539404,10 @@ "plasmid_name": "Active Wnt5B-V5", "sequence-type": "depositor-full", "addgene_id": "43814", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -508581,7 +539455,10 @@ "plasmid_name": "pEntr-GATA4flbio", "sequence-type": "depositor-full", "addgene_id": "32937", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1016959108", + "https://www.ncbi.nlm.nih.gov/pubmed/21415370" + ], "kit": null, "att_sites": [ "attL1", @@ -508609,7 +539486,10 @@ "plasmid_name": "TRAPPC8_pLX307", "sequence-type": "addgene-full", "addgene_id": "98375", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -508669,7 +539549,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM L368G", "sequence-type": "addgene-full", "addgene_id": "169985", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attB1", @@ -508721,7 +539604,10 @@ "plasmid_name": "pMuLE ENTR 7SK R4-R3", "sequence-type": "depositor-full", "addgene_id": "62109", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -508752,7 +539638,10 @@ "plasmid_name": "5'-3xFLAG Smarcc2-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212074", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -508792,7 +539681,10 @@ "plasmid_name": "pCM1.27", "sequence-type": "depositor-full", "addgene_id": "21378", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL4", @@ -508824,7 +539716,10 @@ "plasmid_name": "pDONR223_MAP2K4_p.S184L", "sequence-type": "addgene-full", "addgene_id": "81681", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -508857,7 +539752,10 @@ "plasmid_name": "p3E-ARF6", "sequence-type": "addgene-full", "addgene_id": "109591", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -508888,7 +539786,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP7", "sequence-type": "addgene-full", "addgene_id": "158358", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -508933,7 +539834,10 @@ "plasmid_name": "PB-TET-mOct4", "sequence-type": "depositor-full", "addgene_id": "20907", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "att_sites": [ "attB1", @@ -508982,7 +539886,10 @@ "plasmid_name": "R619-M90-303: CMV51p> HCoV-229E S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166016", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "att_sites": [ "attB1", @@ -509038,7 +539945,10 @@ "plasmid_name": "pSLIK 3xFLAG-TTI1 zeo", "sequence-type": "addgene-full", "addgene_id": "192328", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -509103,7 +540013,10 @@ "plasmid_name": "pLenti CMV TRE3G Neo GFP-Progerin", "sequence-type": "addgene-full", "addgene_id": "118710", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.08.024", + "https://www.ncbi.nlm.nih.gov/pubmed/26341717" + ], "kit": null, "att_sites": [ "attB1", @@ -509169,7 +540082,10 @@ "plasmid_name": "p3E-rab18a", "sequence-type": "addgene-full", "addgene_id": "109671", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -509200,7 +540116,10 @@ "plasmid_name": "TFORF3279", "sequence-type": "addgene-full", "addgene_id": "144755", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -509260,7 +540179,10 @@ "plasmid_name": "pCMU-APr", "sequence-type": "depositor-full", "addgene_id": "61182", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61182.depositor-full.gb" }, @@ -509269,7 +540191,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_UBA/UIM-mut", "sequence-type": "addgene-full", "addgene_id": "187152", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attB1", @@ -509314,7 +540239,10 @@ "plasmid_name": "pDONR223_AKT1_p.E267G", "sequence-type": "addgene-full", "addgene_id": "81561", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -509347,7 +540275,10 @@ "plasmid_name": "GABPA_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176970", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -509399,7 +540330,6 @@ "plasmid_name": "g15t pDONR", "sequence-type": "addgene-full", "addgene_id": "117466", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -509430,7 +540360,10 @@ "plasmid_name": "pYPQ300", "sequence-type": "addgene-full", "addgene_id": "205414", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2023.1251903", + "https://www.ncbi.nlm.nih.gov/pubmed/37901282" + ], "kit": null, "att_sites": [ "attL1", @@ -509462,7 +540395,10 @@ "plasmid_name": "pDONR223_CBX1_WT", "sequence-type": "addgene-full", "addgene_id": "82102", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -509491,7 +540427,10 @@ "plasmid_name": "1457_pDEST_miniTol2_R4-R2_Cryst_mCherry", "sequence-type": "addgene-full", "addgene_id": "171796", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "att_sites": [ "attR2", @@ -509540,7 +540479,10 @@ "plasmid_name": "pDONR221-ZNF442", "sequence-type": "addgene-full", "addgene_id": "101455", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -509569,7 +540511,10 @@ "plasmid_name": "pDONR221_SLC26A8", "sequence-type": "addgene-full", "addgene_id": "132277", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -509600,7 +540545,10 @@ "plasmid_name": "pDONR221_SLC7A5", "sequence-type": "addgene-full", "addgene_id": "132197", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -509632,7 +540580,9 @@ "plasmid_name": "p3E-mCherry-FRB-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82595", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -509669,7 +540619,10 @@ "plasmid_name": "C453-E04: attB4-CMV51p>-attB5", "sequence-type": "addgene-full", "addgene_id": "162973", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -509699,7 +540652,10 @@ "plasmid_name": "pENTR223-BORF1", "sequence-type": "addgene-full", "addgene_id": "195804", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -509729,7 +540685,10 @@ "plasmid_name": "pT2-cryR;dusp5CE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90151", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -509777,7 +540736,10 @@ "plasmid_name": "pDONR221-SLCO5A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161415", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -509808,7 +540770,10 @@ "plasmid_name": "pHAGE-SRSF2-P95_R102delPPDSHHSR", "sequence-type": "addgene-full", "addgene_id": "116684", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -509862,7 +540827,10 @@ "plasmid_name": "p35S::AtSOBIR1-YFPc", "sequence-type": "addgene-full", "addgene_id": "86162", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "file": "data/addgene_plasmids/86162.addgene-full.gb" }, @@ -509871,7 +540839,10 @@ "plasmid_name": "pCM1.57", "sequence-type": "depositor-full", "addgene_id": "17252", - "references": [], + "references": [ + "https://doi.org/10.1895/wormbook.1.148.1", + "https://www.ncbi.nlm.nih.gov/pubmed/20169625" + ], "kit": null, "att_sites": [ "attL4", @@ -509901,7 +540872,10 @@ "plasmid_name": "pDE43-MCK", "sequence-type": "depositor-full", "addgene_id": "49523", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "att_sites": [ "attR3", @@ -509931,7 +540905,10 @@ "plasmid_name": "pHAGE-PIK3CD-C416R", "sequence-type": "addgene-full", "addgene_id": "116564", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -509985,7 +540962,10 @@ "plasmid_name": "pDONR223_STAP2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83000", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -510014,7 +540994,10 @@ "plasmid_name": "tetO-MESP1", "sequence-type": "addgene-full", "addgene_id": "170694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -510076,7 +541059,10 @@ "plasmid_name": "pLenti6/V5/DEST-VPS35", "sequence-type": "addgene-full", "addgene_id": "21691", - "references": [], + "references": [ + "https://doi.org/10.1038/nature08109", + "https://www.ncbi.nlm.nih.gov/pubmed/19553991" + ], "kit": null, "file": "data/addgene_plasmids/21691.addgene-full.gb" }, @@ -510085,7 +541071,10 @@ "plasmid_name": "pET22b-His6-UBCH7", "sequence-type": "addgene-full", "addgene_id": "212711", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.11.016", + "https://www.ncbi.nlm.nih.gov/pubmed/38103558" + ], "kit": null, "att_sites": [ "attB1", @@ -510125,7 +541114,10 @@ "plasmid_name": "pCMB-AUTr", "sequence-type": "depositor-full", "addgene_id": "61205", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "att_sites": [ "attB1", @@ -510170,7 +541162,6 @@ "plasmid_name": "IDG_TMC5_OE_1", "sequence-type": "addgene-full", "addgene_id": "161621", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -510229,7 +541220,10 @@ "plasmid_name": "pPPED", "sequence-type": "addgene-full", "addgene_id": "162468", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.617553", + "https://www.ncbi.nlm.nih.gov/pubmed/34713247" + ], "kit": null, "att_sites": [ "attR1", @@ -510281,7 +541275,10 @@ "plasmid_name": "pDONR223-JAK2", "sequence-type": "addgene-full", "addgene_id": "23915", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -510313,7 +541310,10 @@ "plasmid_name": "pSC24", "sequence-type": "addgene-full", "addgene_id": "104798", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -510356,7 +541356,10 @@ "plasmid_name": "pJA281", "sequence-type": "depositor-full", "addgene_id": "22513", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "att_sites": [ "attL4", @@ -510387,7 +541390,10 @@ "plasmid_name": "1a154 (H77)", "sequence-type": "addgene-full", "addgene_id": "177689", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "att_sites": [ "attB1", @@ -510437,7 +541443,6 @@ "plasmid_name": "R777-E240 Hs.RASGRF1-nostop", "sequence-type": "depositor-full", "addgene_id": "70524", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -510465,7 +541470,10 @@ "plasmid_name": "pAG425GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14297", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -510528,7 +541536,10 @@ "plasmid_name": "pLentiX2-PURO-shLKB1-Hu", "sequence-type": "addgene-full", "addgene_id": "61242", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.06.021", + "https://www.ncbi.nlm.nih.gov/pubmed/25042806" + ], "kit": null, "att_sites": [ "attB1", @@ -510587,7 +541598,10 @@ "plasmid_name": "pSF463", "sequence-type": "addgene-full", "addgene_id": "167671", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attL1", @@ -510623,7 +541637,10 @@ "plasmid_name": "pDONR221-SLC5A10_STOP", "sequence-type": "depositor-full", "addgene_id": "161371", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -510654,7 +541671,6 @@ "plasmid_name": "pLenti6.3_HES2", "sequence-type": "addgene-full", "addgene_id": "124070", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -510715,7 +541731,10 @@ "plasmid_name": "pDONR221_SLC25A53", "sequence-type": "addgene-full", "addgene_id": "132043", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -510746,7 +541765,6 @@ "plasmid_name": "pDONR221-si:dkey-79d12.5", "sequence-type": "addgene-full", "addgene_id": "192736", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -510777,7 +541795,10 @@ "plasmid_name": "pENTR-2B-Tbx5", "sequence-type": "addgene-full", "addgene_id": "98619", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "att_sites": [ "attL1", @@ -510801,7 +541822,10 @@ "plasmid_name": "MAC_N_SP7", "sequence-type": "addgene-full", "addgene_id": "167798", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -510846,7 +541870,10 @@ "plasmid_name": "MAC_N_ELK4", "sequence-type": "addgene-full", "addgene_id": "187745", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -510891,7 +541918,10 @@ "plasmid_name": "pDONR223_ILKAP_p.S61Y", "sequence-type": "addgene-full", "addgene_id": "81376", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -510923,7 +541953,10 @@ "plasmid_name": "pCFJ2215 - Intron GG3 - 900 bp", "sequence-type": "addgene-full", "addgene_id": "159882", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -510954,7 +541987,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L3L2", "sequence-type": "addgene-full", "addgene_id": "113740", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -510988,7 +542024,10 @@ "plasmid_name": "pENTR2-L3-SfoI-Cerulean-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141020", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL3", @@ -511031,7 +542070,6 @@ "plasmid_name": "DDX3X - K215G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216578", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -511060,7 +542098,10 @@ "plasmid_name": "2xmyc-RAB10", "sequence-type": "addgene-full", "addgene_id": "164631", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "att_sites": [ "attB1", @@ -511102,7 +542143,10 @@ "plasmid_name": "pHAGE-eGFP-OPTN", "sequence-type": "addgene-full", "addgene_id": "175750", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2015.08.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26365381" + ], "kit": null, "att_sites": [ "attB1", @@ -511155,7 +542199,10 @@ "plasmid_name": "pGWB435", "sequence-type": "depositor-full", "addgene_id": "74825", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -511204,7 +542251,10 @@ "plasmid_name": "pGC48", "sequence-type": "depositor-full", "addgene_id": "19679", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -511240,7 +542290,10 @@ "plasmid_name": "pDONR223_BTRC_WT", "sequence-type": "addgene-full", "addgene_id": "82244", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -511269,7 +542322,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0425-luc2", "sequence-type": "addgene-full", "addgene_id": "214633", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214633.addgene-full.gb" }, @@ -511278,7 +542334,9 @@ "plasmid_name": "pDONR223-TAF5-FL", "sequence-type": "addgene-full", "addgene_id": "209047", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "att_sites": [ "attL1", @@ -511307,7 +542365,10 @@ "plasmid_name": "pDONR221_SLC37A1", "sequence-type": "addgene-full", "addgene_id": "132131", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132131.addgene-full.gb" }, @@ -511316,7 +542377,6 @@ "plasmid_name": "R777-E030 Hs.CNKSR2-nostop", "sequence-type": "depositor-full", "addgene_id": "70314", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -511344,7 +542404,10 @@ "plasmid_name": "pHAGE-PIK3CB-R321Q", "sequence-type": "addgene-full", "addgene_id": "116559", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -511399,7 +542462,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS hygro", "sequence-type": "addgene-full", "addgene_id": "158634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "att_sites": [ "attB1", @@ -511465,7 +542531,6 @@ "plasmid_name": "MECP2 - S411R in pENTR", "sequence-type": "addgene-full", "addgene_id": "216603", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -511495,7 +542560,10 @@ "plasmid_name": "TFORF3532", "sequence-type": "depositor-full", "addgene_id": "145008", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -511555,7 +542623,10 @@ "plasmid_name": "pcDNA5/FRT/TO/MACROD2", "sequence-type": "addgene-full", "addgene_id": "172579", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "att_sites": [ "attB1", @@ -511597,7 +542668,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NN_G1397-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171730", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attL1", @@ -511633,7 +542707,10 @@ "plasmid_name": "pGL2313", "sequence-type": "addgene-full", "addgene_id": "137053", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-9210-2_10", + "https://www.ncbi.nlm.nih.gov/pubmed/30980305" + ], "kit": null, "att_sites": [ "attL1", @@ -511669,7 +542746,10 @@ "plasmid_name": "BirA-Myc_N_FOXL1", "sequence-type": "addgene-full", "addgene_id": "167703", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -511713,7 +542793,6 @@ "plasmid_name": "pAG426-GAL-Alpha-synuclein", "sequence-type": "addgene-full", "addgene_id": "181715", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -511767,7 +542846,10 @@ "plasmid_name": "pYPQ143-ZmUbi-tRNA", "sequence-type": "addgene-full", "addgene_id": "158400", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00953-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34168320" + ], "kit": null, "att_sites": [ "attL2", @@ -511800,7 +542882,9 @@ "plasmid_name": "pDestTol2-QUAS:GCaMP7a", "sequence-type": "addgene-full", "addgene_id": "184817", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "att_sites": [ "attB1", @@ -511841,7 +542925,10 @@ "plasmid_name": "pDEST40-2XHA-Src-Y419F", "sequence-type": "addgene-full", "addgene_id": "140316", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "att_sites": [ "attB1", @@ -511893,7 +542980,10 @@ "plasmid_name": "R703-M72-303: CMV51p> Halotag-Hs.KRAS4b", "sequence-type": "addgene-full", "addgene_id": "159679", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "att_sites": [ "attB1", @@ -511951,7 +543041,6 @@ "plasmid_name": "p667-UBC-AAK1-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135257", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -512017,7 +543106,6 @@ "plasmid_name": "pENTR-R2L3-IRES-Venus-pA", "sequence-type": "addgene-full", "addgene_id": "139542", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -512058,7 +543146,10 @@ "plasmid_name": "pDONR221_SVOP", "sequence-type": "addgene-full", "addgene_id": "132305", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -512089,7 +543180,10 @@ "plasmid_name": "pDONR223-CSF1R", "sequence-type": "addgene-full", "addgene_id": "23928", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -512121,7 +543215,6 @@ "plasmid_name": "pSC37", "sequence-type": "addgene-full", "addgene_id": "104811", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -512165,7 +543258,10 @@ "plasmid_name": "pDEST-FLAG", "sequence-type": "addgene-full", "addgene_id": "183511", - "references": [], + "references": [ + "https://doi.org/10.1186/1755-8417-1-5", + "https://www.ncbi.nlm.nih.gov/pubmed/19046415" + ], "kit": null, "att_sites": [ "attR1", @@ -512214,7 +543310,10 @@ "plasmid_name": "pLX_314-HRI-V5", "sequence-type": "addgene-full", "addgene_id": "202434", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-22-1230", + "https://www.ncbi.nlm.nih.gov/pubmed/36576405" + ], "kit": null, "att_sites": [ "attB1", @@ -512274,7 +543373,10 @@ "plasmid_name": "mTALEAD 16S rRNA-1", "sequence-type": "addgene-full", "addgene_id": "210833", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "att_sites": [ "attB1", @@ -512313,7 +543415,10 @@ "plasmid_name": "pHAGE-IGF1R-N146T", "sequence-type": "addgene-full", "addgene_id": "116416", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -512367,7 +543472,10 @@ "plasmid_name": "pGC276", "sequence-type": "depositor-full", "addgene_id": "19637", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attR1", @@ -512405,7 +543513,10 @@ "plasmid_name": "pAG303GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14373", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -512464,7 +543575,6 @@ "plasmid_name": "IDG_CACNG5_OE_1", "sequence-type": "addgene-full", "addgene_id": "161687", - "references": [], "kit": null, "file": "data/addgene_plasmids/161687.addgene-full.gb" }, @@ -512473,7 +543583,10 @@ "plasmid_name": "pLenti X1 Puro DEST (694-6)", "sequence-type": "addgene-full", "addgene_id": "17297", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attR1", @@ -512536,7 +543649,10 @@ "plasmid_name": "pDL188", "sequence-type": "addgene-full", "addgene_id": "175930", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -512560,7 +543676,10 @@ "plasmid_name": "LVXN-Neo-NSD2", "sequence-type": "addgene-full", "addgene_id": "86010", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2777", + "https://www.ncbi.nlm.nih.gov/pubmed/24076604" + ], "kit": null, "att_sites": [ "attB1", @@ -512613,7 +543732,6 @@ "plasmid_name": "EFR Y877F (17)", "sequence-type": "addgene-full", "addgene_id": "102415", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -512653,7 +543771,10 @@ "plasmid_name": "pSGE_773_zen_VRE_dCP", "sequence-type": "depositor-full", "addgene_id": "71158", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -512686,7 +543807,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16-18 E7 Chimera A", "sequence-type": "addgene-full", "addgene_id": "191542", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "att_sites": [ "attB1", @@ -512732,7 +543856,10 @@ "plasmid_name": "PTPRA_C723S-GFP fusion", "sequence-type": "addgene-full", "addgene_id": "139639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -512779,7 +543906,10 @@ "plasmid_name": "pDONR-221-P3-P4", "sequence-type": "addgene-full", "addgene_id": "186351", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attP3", @@ -512815,7 +543945,10 @@ "plasmid_name": "pDONR221 CARD8 ZUC", "sequence-type": "addgene-full", "addgene_id": "169964", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "att_sites": [ "attL1", @@ -512846,7 +543979,10 @@ "plasmid_name": "pSLIK TT 3xFLAG ID2 hygro", "sequence-type": "addgene-full", "addgene_id": "98394", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "att_sites": [ "attB1", @@ -512912,7 +544048,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 allKR", "sequence-type": "addgene-full", "addgene_id": "129298", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "att_sites": [ "attB1", @@ -512956,7 +544095,10 @@ "plasmid_name": "LF801: pMVP (L1-R5) cTnT promoter", "sequence-type": "addgene-full", "addgene_id": "121696", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL1", @@ -512987,7 +544129,6 @@ "plasmid_name": "R777-E012 Hs.ARHGAP35-nostop", "sequence-type": "depositor-full", "addgene_id": "70296", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -513016,7 +544157,10 @@ "plasmid_name": "pDONR223_GPR137B_p.Y135N", "sequence-type": "addgene-full", "addgene_id": "82752", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -513045,7 +544189,10 @@ "plasmid_name": "JDW 762 (pCS2-EGFP-hsKRAS4B-G12V)", "sequence-type": "addgene-full", "addgene_id": "156407", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "att_sites": [ "attB1", @@ -513090,7 +544237,10 @@ "plasmid_name": "MiniCoopR 2xU6:gRNA pten, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118845", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "att_sites": [ "attB1", @@ -513134,7 +544284,10 @@ "plasmid_name": "pHAGE-ERBB2-G919W", "sequence-type": "addgene-full", "addgene_id": "116334", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -513188,7 +544341,10 @@ "plasmid_name": "p3E-HsNRF2 (NFE2L2)", "sequence-type": "addgene-full", "addgene_id": "194302", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "att_sites": [ "attB2", @@ -513219,7 +544375,10 @@ "plasmid_name": "pAC148-pCR8-dCas9VP96", "sequence-type": "depositor-full", "addgene_id": "48220", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attL1", @@ -513252,7 +544411,10 @@ "plasmid_name": "pcDNA3.2/NS4A-2K", "sequence-type": "addgene-full", "addgene_id": "120820", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "att_sites": [ "attB1", @@ -513302,7 +544464,10 @@ "plasmid_name": "p3E-rab32b", "sequence-type": "addgene-full", "addgene_id": "109690", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -513333,7 +544498,10 @@ "plasmid_name": "pDONR221_MFSD5", "sequence-type": "addgene-full", "addgene_id": "131941", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -513364,7 +544532,10 @@ "plasmid_name": "pEZY45", "sequence-type": "depositor-full", "addgene_id": "18704", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "att_sites": [ "attR1", @@ -513410,7 +544581,10 @@ "plasmid_name": "p5E-mcs2", "sequence-type": "addgene-full", "addgene_id": "138362", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "att_sites": [ "attL4", @@ -513440,7 +544614,10 @@ "plasmid_name": "pEBTet-SNAP-Cep76", "sequence-type": "addgene-full", "addgene_id": "136813", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -513486,7 +544663,6 @@ "plasmid_name": "pCWXPG-UBI-PDX1", "sequence-type": "addgene-full", "addgene_id": "114304", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -513543,7 +544719,10 @@ "plasmid_name": "pDONR223_NRAS_p.G12C", "sequence-type": "addgene-full", "addgene_id": "81660", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -513575,7 +544754,10 @@ "plasmid_name": "pME-Cav3", "sequence-type": "addgene-full", "addgene_id": "109570", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL1", @@ -513607,7 +544789,10 @@ "plasmid_name": "TFORF2978", "sequence-type": "addgene-full", "addgene_id": "144454", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -513667,7 +544852,10 @@ "plasmid_name": "p2R3a-VenusYFP-3AT", "sequence-type": "depositor-full", "addgene_id": "71269", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attL3", @@ -513707,7 +544895,10 @@ "plasmid_name": "pJW4.12", "sequence-type": "depositor-full", "addgene_id": "62868", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "att_sites": [ "attB1", @@ -513751,7 +544942,10 @@ "plasmid_name": "pDONR223_ZNF454_p.P299L", "sequence-type": "addgene-full", "addgene_id": "81454", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -513783,7 +544977,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_Long", "sequence-type": "addgene-full", "addgene_id": "221483", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "att_sites": [ "attB1", @@ -513843,7 +545040,6 @@ "plasmid_name": "R777-E258 Hs.RASSF3-nostop", "sequence-type": "depositor-full", "addgene_id": "70542", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -513871,7 +545067,10 @@ "plasmid_name": "pDONR221-MFSD3_STOP", "sequence-type": "addgene-full", "addgene_id": "161071", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -513902,7 +545101,6 @@ "plasmid_name": "zcUAS:PSD95.FingR-GFP-ZFC(CCR5TC)-KRAB(A)", "sequence-type": "addgene-full", "addgene_id": "72638", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -513948,7 +545146,10 @@ "plasmid_name": "GS2.1/EC", "sequence-type": "addgene-full", "addgene_id": "132568", - "references": [], + "references": [ + "https://doi.org/10.1111/ppl.13079", + "https://www.ncbi.nlm.nih.gov/pubmed/32096870" + ], "kit": null, "att_sites": [ "attB2" @@ -513989,7 +545190,10 @@ "plasmid_name": "pGTQL1211YN", "sequence-type": "depositor-full", "addgene_id": "61704", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2009.04048.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19843313" + ], "kit": null, "file": "data/addgene_plasmids/61704.depositor-full.gb" }, @@ -513998,7 +545202,10 @@ "plasmid_name": "pcDNA3-FLAG -YWAA-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107381", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -514041,7 +545248,9 @@ "plasmid_name": "pMpGWB431", "sequence-type": "depositor-full", "addgene_id": "68696", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -514092,7 +545301,10 @@ "plasmid_name": "TFORF3184", "sequence-type": "addgene-full", "addgene_id": "144660", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -514152,7 +545364,10 @@ "plasmid_name": "pDONR221_RHCG", "sequence-type": "addgene-full", "addgene_id": "131895", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -514183,7 +545398,10 @@ "plasmid_name": "pLX304 ERG", "sequence-type": "addgene-full", "addgene_id": "118625", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.06.040", + "https://www.ncbi.nlm.nih.gov/pubmed/30078722" + ], "kit": null, "att_sites": [ "attB1", @@ -514242,7 +545460,10 @@ "plasmid_name": "TFORF3104", "sequence-type": "addgene-full", "addgene_id": "144580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -514302,7 +545523,6 @@ "plasmid_name": "pHAGE pGK ERFlux (Bip-HaloTag7-mGFP-KDEL-STOP)", "sequence-type": "addgene-full", "addgene_id": "215013", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -514369,7 +545589,10 @@ "plasmid_name": "pDONR223_IDH2_WT", "sequence-type": "addgene-full", "addgene_id": "81800", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -514401,7 +545624,10 @@ "plasmid_name": "pLenti-PGK-EGFP-ALDH1A1-Neo", "sequence-type": "addgene-full", "addgene_id": "189742", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "att_sites": [ "attB1", @@ -514466,7 +545692,10 @@ "plasmid_name": "pDONR221-SLC40A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161391", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -514497,7 +545726,10 @@ "plasmid_name": "A1-LCD-6R", "sequence-type": "addgene-full", "addgene_id": "178665", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -514532,7 +545764,10 @@ "plasmid_name": "pDONR-IAA2_no stop", "sequence-type": "depositor-full", "addgene_id": "83858", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "att_sites": [ "attL1", @@ -514563,7 +545798,10 @@ "plasmid_name": "pDONR221-ASCL3", "sequence-type": "depositor-full", "addgene_id": "101515", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attB2", @@ -514596,7 +545834,10 @@ "plasmid_name": "pKL2351", "sequence-type": "addgene-full", "addgene_id": "199721", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad231", + "https://www.ncbi.nlm.nih.gov/pubmed/37070560" + ], "kit": null, "att_sites": [ "attR1", @@ -514639,7 +545880,10 @@ "plasmid_name": "pEntry_HCoV-NL63-Spike", "sequence-type": "addgene-full", "addgene_id": "168929", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -514668,7 +545912,6 @@ "plasmid_name": "R777-E289 Hs.RPS6KA1", "sequence-type": "addgene-full", "addgene_id": "70573", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -514696,7 +545939,10 @@ "plasmid_name": "pENTR-SLC66A1_STOP", "sequence-type": "addgene-full", "addgene_id": "221418", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -514726,7 +545972,10 @@ "plasmid_name": "KJ101: pMVP (R4-R3) osTir1", "sequence-type": "addgene-full", "addgene_id": "121742", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -514759,7 +546008,10 @@ "plasmid_name": "pDONR223_EBNA1BP2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82932", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -514788,7 +546040,10 @@ "plasmid_name": "pDONR221 Puf6", "sequence-type": "depositor-full", "addgene_id": "63770", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1" @@ -514817,7 +546072,6 @@ "plasmid_name": "pAM-35s-Snrk2.3-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102391", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -514851,7 +546105,10 @@ "plasmid_name": "pLenti CMV Hygro DHFR.dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134731", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "att_sites": [ "attB1", @@ -514912,7 +546169,10 @@ "plasmid_name": "pGWB501", "sequence-type": "depositor-full", "addgene_id": "74843", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -514957,7 +546217,9 @@ "plasmid_name": "pME-Lifeact-mCherry-3xHA (JDW 1321)", "sequence-type": "addgene-full", "addgene_id": "224493", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -514995,7 +546257,10 @@ "plasmid_name": "pDONR221-SLC7A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161103", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -515026,7 +546291,10 @@ "plasmid_name": "pSGE_MC19_Trl-2xUAS_dCP", "sequence-type": "depositor-full", "addgene_id": "71170", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "att_sites": [ "attB1", @@ -515061,7 +546329,10 @@ "plasmid_name": "pDONR223_BAP1_p.D75G", "sequence-type": "addgene-full", "addgene_id": "81526", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -515094,7 +546365,6 @@ "plasmid_name": "R777-E088 Hs.FGFR3-nostop", "sequence-type": "depositor-full", "addgene_id": "70372", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -515122,7 +546392,10 @@ "plasmid_name": "TFORF3236", "sequence-type": "addgene-full", "addgene_id": "144712", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -515182,7 +546455,10 @@ "plasmid_name": "actc1b-mKate2-rab3ab", "sequence-type": "addgene-full", "addgene_id": "109636", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -515224,7 +546500,10 @@ "plasmid_name": "pHAGE-FGFR4-M708I", "sequence-type": "addgene-full", "addgene_id": "116392", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -515274,7 +546553,10 @@ "plasmid_name": "TFORF3313", "sequence-type": "addgene-full", "addgene_id": "144789", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -515334,7 +546616,10 @@ "plasmid_name": "pHAGE-EGFR-T363I", "sequence-type": "addgene-full", "addgene_id": "116309", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116309.addgene-full.gb" }, @@ -515343,7 +546628,10 @@ "plasmid_name": "pDEST26 Ago2 5A", "sequence-type": "depositor-full", "addgene_id": "60651", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2013.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/23603119" + ], "kit": null, "att_sites": [ "attB1", @@ -515392,7 +546680,10 @@ "plasmid_name": "pDONR223_ABCB9_p.R281L", "sequence-type": "addgene-full", "addgene_id": "82840", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -515422,7 +546713,10 @@ "plasmid_name": "pDONR221-SLC26A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161198", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -515453,7 +546747,10 @@ "plasmid_name": "pLIX405-KANK1", "sequence-type": "addgene-full", "addgene_id": "121984", - "references": [], + "references": [ + "https://doi.org/10.1038/srep46392", + "https://www.ncbi.nlm.nih.gov/pubmed/28436992" + ], "kit": null, "att_sites": [ "attB1", @@ -515512,7 +546809,6 @@ "plasmid_name": "R777-E331 Hs.SPRY3", "sequence-type": "depositor-full", "addgene_id": "70615", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -515540,7 +546836,10 @@ "plasmid_name": "EMR2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98332", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1", @@ -515600,7 +546899,10 @@ "plasmid_name": "pDONR221-SLC32A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161278", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -515631,7 +546933,10 @@ "plasmid_name": "pDONR221-kcnj20", "sequence-type": "addgene-full", "addgene_id": "173150", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -515662,7 +546967,10 @@ "plasmid_name": "pMLS714", "sequence-type": "addgene-full", "addgene_id": "188886", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "att_sites": [ "attB1", @@ -515697,7 +547005,10 @@ "plasmid_name": "pYPQ265O2", "sequence-type": "addgene-full", "addgene_id": "174002", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "att_sites": [ "attL1", @@ -515732,7 +547043,10 @@ "plasmid_name": "MAC-NRP1", "sequence-type": "addgene-full", "addgene_id": "158384", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "att_sites": [ "attB1", @@ -515777,7 +547091,10 @@ "plasmid_name": "pCM5.57", "sequence-type": "depositor-full", "addgene_id": "19378", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL3", @@ -515808,7 +547125,10 @@ "plasmid_name": "TFORF2993", "sequence-type": "addgene-full", "addgene_id": "144469", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -515868,7 +547188,10 @@ "plasmid_name": "IZ401: pMVP/Lenti/Neo-DEST", "sequence-type": "addgene-full", "addgene_id": "121850", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -515926,7 +547249,10 @@ "plasmid_name": "pDONR223_TRAP1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82994", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -515955,7 +547281,10 @@ "plasmid_name": "pDONR223_CHD2_p.E412K", "sequence-type": "addgene-full", "addgene_id": "81469", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -515987,7 +547316,10 @@ "plasmid_name": "CMYA5/pDEST15", "sequence-type": "addgene-full", "addgene_id": "98106", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "att_sites": [ "attB1", @@ -516023,7 +547355,10 @@ "plasmid_name": "pENTR1A-NTAP-C (w324-1)", "sequence-type": "depositor-full", "addgene_id": "17404", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -516051,7 +547386,10 @@ "plasmid_name": "pCM1.58", "sequence-type": "depositor-full", "addgene_id": "21380", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL4", @@ -516082,7 +547420,10 @@ "plasmid_name": "pAG306-GPD-AVT1 chr I", "sequence-type": "depositor-full", "addgene_id": "41898", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11654", + "https://www.ncbi.nlm.nih.gov/pubmed/23172144" + ], "kit": null, "att_sites": [ "attB1", @@ -516130,7 +547471,10 @@ "plasmid_name": "pAG416GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14315", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -516192,7 +547536,6 @@ "plasmid_name": "pENTRY4_ PLDbeta1", "sequence-type": "addgene-full", "addgene_id": "126902", - "references": [], "kit": null, "att_sites": [ "attB2", @@ -516227,7 +547570,10 @@ "plasmid_name": "pCLX-UBI-GFP", "sequence-type": "depositor-full", "addgene_id": "27245", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-125-7_25", + "https://www.ncbi.nlm.nih.gov/pubmed/23097121" + ], "kit": null, "att_sites": [ "attB1", @@ -516282,7 +547628,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF9Bwu", "sequence-type": "addgene-full", "addgene_id": "149331", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -516311,7 +547660,10 @@ "plasmid_name": "actc1b-mKate2-LactC2", "sequence-type": "addgene-full", "addgene_id": "109499", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109499.addgene-full.gb" }, @@ -516320,7 +547672,10 @@ "plasmid_name": "pBBR5pemIK-GW", "sequence-type": "addgene-full", "addgene_id": "126556", - "references": [], + "references": [ + "https://doi.org/10.1094/PHYTO-02-16-0097-R", + "https://www.ncbi.nlm.nih.gov/pubmed/27088393" + ], "kit": null, "file": "data/addgene_plasmids/126556.addgene-full.gb" }, @@ -516329,7 +547684,10 @@ "plasmid_name": "TFORF3544", "sequence-type": "depositor-full", "addgene_id": "145020", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -516389,7 +547747,10 @@ "plasmid_name": "pDONR223_CTCF_WT", "sequence-type": "addgene-full", "addgene_id": "81789", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -516421,7 +547782,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a R", "sequence-type": "addgene-full", "addgene_id": "89387", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "att_sites": [ "attR1", @@ -516475,7 +547839,10 @@ "plasmid_name": "pBKWH", "sequence-type": "addgene-full", "addgene_id": "133898", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "att_sites": [ "attR1", @@ -516517,7 +547884,10 @@ "plasmid_name": "pDONR223_MAPK6_p.D387N", "sequence-type": "addgene-full", "addgene_id": "81712", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -516549,7 +547919,10 @@ "plasmid_name": "pCWXPGR-pTF-DVL2deltaDIX", "sequence-type": "addgene-full", "addgene_id": "114276", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "att_sites": [ "attB1", @@ -516611,7 +547984,10 @@ "plasmid_name": "pSLIK_hygro_3xflag_NRF2(RR)", "sequence-type": "addgene-full", "addgene_id": "136535", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "att_sites": [ "attB1", @@ -516677,7 +548053,10 @@ "plasmid_name": "WT A1-LCD +NLS", "sequence-type": "addgene-full", "addgene_id": "178658", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "att_sites": [ "attB1", @@ -516712,7 +548091,10 @@ "plasmid_name": "pDONR221-SLC6A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161337", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -516743,7 +548125,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp5", "sequence-type": "addgene-full", "addgene_id": "168914", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -516772,7 +548157,10 @@ "plasmid_name": "TFORF3050", "sequence-type": "addgene-full", "addgene_id": "144526", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -516832,7 +548220,9 @@ "plasmid_name": "pDONR221 msNLRP3", "sequence-type": "addgene-full", "addgene_id": "218639", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "att_sites": [ "attL1", @@ -516863,7 +548253,10 @@ "plasmid_name": "pDONR 221-PHL2 (STOP)", "sequence-type": "addgene-full", "addgene_id": "118683", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118683.addgene-full.gb" }, @@ -516872,7 +548265,10 @@ "plasmid_name": "p8193 MSCV-P C-FlagHA 18E7 R84S", "sequence-type": "addgene-full", "addgene_id": "163307", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "att_sites": [ "attB1", @@ -516918,7 +548314,9 @@ "plasmid_name": "pDONR221-MARK4(v1)", "sequence-type": "addgene-full", "addgene_id": "166185", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "att_sites": [ "attL1", @@ -516949,7 +548347,10 @@ "plasmid_name": "TFORF3496", "sequence-type": "addgene-full", "addgene_id": "144972", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -517009,7 +548410,10 @@ "plasmid_name": "pTol2p2A--3mnx1:loxP-mTagBFP2-stop-loxP-mCherry-NS-MCS", "sequence-type": "depositor-full", "addgene_id": "78251", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -517055,7 +548459,10 @@ "plasmid_name": "pHAGE-EGFR-E746_T751delinsA", "sequence-type": "addgene-full", "addgene_id": "116246", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -517109,7 +548516,10 @@ "plasmid_name": "pTol2-PcyA-IRES-HO1", "sequence-type": "addgene-full", "addgene_id": "131787", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.232", + "https://www.ncbi.nlm.nih.gov/pubmed/32745301" + ], "kit": null, "att_sites": [ "attB1", @@ -517143,7 +548553,10 @@ "plasmid_name": "pLenti6.3/V5-DEST-GFP", "sequence-type": "addgene-full", "addgene_id": "40125", - "references": [], + "references": [ + "https://doi.org/10.1093/neuonc/nos246", + "https://www.ncbi.nlm.nih.gov/pubmed/23074196" + ], "kit": null, "att_sites": [ "attB1", @@ -517208,7 +548621,6 @@ "plasmid_name": "pENTR-ABCF2_STOP", "sequence-type": "addgene-full", "addgene_id": "221425", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -517238,7 +548650,6 @@ "plasmid_name": "R777-E308 Hs.SHC1-nostop", "sequence-type": "depositor-full", "addgene_id": "70592", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -517266,7 +548677,10 @@ "plasmid_name": "R717-X45-566: His6-MBP-tev-Hs.RAF1(136-188)", "sequence-type": "addgene-full", "addgene_id": "159698", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.005669", + "https://www.ncbi.nlm.nih.gov/pubmed/30559287" + ], "kit": null, "att_sites": [ "attB1", @@ -517312,7 +548726,10 @@ "plasmid_name": "pDONR223_AKT1S1_WT", "sequence-type": "addgene-full", "addgene_id": "82091", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -517344,7 +548761,10 @@ "plasmid_name": "pAG423GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14221", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -517407,7 +548827,10 @@ "plasmid_name": "hsp70:Stathmin1-mKate2", "sequence-type": "addgene-full", "addgene_id": "105969", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21206", + "https://www.ncbi.nlm.nih.gov/pubmed/26879757" + ], "kit": null, "att_sites": [ "attB1", @@ -517448,7 +548871,10 @@ "plasmid_name": "pAC150-KEIMA-REEP5", "sequence-type": "addgene-full", "addgene_id": "201928", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "att_sites": [ "attB1", @@ -517504,7 +548930,10 @@ "plasmid_name": "pLgw RFC1-V5-EcoDam", "sequence-type": "depositor-full", "addgene_id": "59205", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "att_sites": [ "attR1", @@ -517562,7 +548991,10 @@ "plasmid_name": "pHAGE-TANC2__PRKCA", "sequence-type": "addgene-full", "addgene_id": "116838", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -517612,7 +549044,10 @@ "plasmid_name": "pENTR221-NR1H2", "sequence-type": "addgene-full", "addgene_id": "79513", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -517643,7 +549078,10 @@ "plasmid_name": "pCPP5741", "sequence-type": "addgene-full", "addgene_id": "128722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.04.037", + "https://www.ncbi.nlm.nih.gov/pubmed/29742421" + ], "kit": null, "att_sites": [ "attL1", @@ -517674,7 +549112,10 @@ "plasmid_name": "R791-X15-636: His6-MBP-tev-Hs.NF1 DEF (1541-2818)", "sequence-type": "addgene-full", "addgene_id": "159578", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA119.010934", + "https://www.ncbi.nlm.nih.gov/pubmed/31836666" + ], "kit": null, "att_sites": [ "attB1", @@ -517713,7 +549154,6 @@ "plasmid_name": "pCM1.111", "sequence-type": "depositor-full", "addgene_id": "19598", - "references": [], "kit": null, "att_sites": [ "attL4", @@ -517744,7 +549184,10 @@ "plasmid_name": "pKB12 (pDEST-DHFR F[3] C-term, HygR)", "sequence-type": "addgene-full", "addgene_id": "210486", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210486.addgene-full.gb" }, @@ -517753,7 +549196,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::RfA-venus", "sequence-type": "addgene-full", "addgene_id": "186409", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -517801,7 +549247,10 @@ "plasmid_name": "pHAGE-BCL2", "sequence-type": "addgene-full", "addgene_id": "116717", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116717.addgene-full.gb" }, @@ -517810,7 +549259,6 @@ "plasmid_name": "pENTR-R2L3-cGR-IRESpuro-pA", "sequence-type": "addgene-full", "addgene_id": "139538", - "references": [], "kit": null, "att_sites": [ "attL3", @@ -517849,7 +549297,10 @@ "plasmid_name": "pEXP(V5-APEX2-NES)", "sequence-type": "addgene-full", "addgene_id": "107596", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-018-0220-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30478324" + ], "kit": null, "att_sites": [ "attB1", @@ -517894,7 +549345,10 @@ "plasmid_name": "pME-QUASM1:GFPNLS-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155116", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "att_sites": [ "attL1", @@ -517933,7 +549387,10 @@ "plasmid_name": "pCAG/ATP8B1-HA", "sequence-type": "addgene-full", "addgene_id": "209209", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -517979,7 +549436,10 @@ "plasmid_name": "TFORF3520", "sequence-type": "depositor-full", "addgene_id": "144996", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -518039,7 +549499,10 @@ "plasmid_name": "tetO-ZFPM2", "sequence-type": "addgene-full", "addgene_id": "170707", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "att_sites": [ "attB1", @@ -518100,7 +549563,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_R38E", "sequence-type": "depositor-full", "addgene_id": "65665", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "att_sites": [ "attB1", @@ -518117,7 +549583,10 @@ "plasmid_name": "GFP-Ago4", "sequence-type": "addgene-full", "addgene_id": "21536", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1229409", + "https://www.ncbi.nlm.nih.gov/pubmed/19324964" + ], "kit": null, "att_sites": [ "attB1", @@ -518164,7 +549633,10 @@ "plasmid_name": "pENTR4_G3BP2", "sequence-type": "addgene-full", "addgene_id": "127105", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.12.024", + "https://www.ncbi.nlm.nih.gov/pubmed/31981475" + ], "kit": null, "att_sites": [ "attL1", @@ -518195,7 +549667,6 @@ "plasmid_name": "IDG_SCNN1D_OE_1", "sequence-type": "addgene-full", "addgene_id": "161666", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -518254,7 +549725,10 @@ "plasmid_name": "pINDUCER-21-LCOR-P2A-HOXA9-T2A-HOXA5", "sequence-type": "addgene-full", "addgene_id": "97044", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "att_sites": [ "attB1", @@ -518312,7 +549786,10 @@ "plasmid_name": "TRAIP-SFB", "sequence-type": "addgene-full", "addgene_id": "101769", - "references": [], + "references": [ + "https://doi.org/10.1038/celldisc.2016.16", + "https://www.ncbi.nlm.nih.gov/pubmed/27462463" + ], "kit": null, "att_sites": [ "attB1", @@ -518358,7 +549835,6 @@ "plasmid_name": "MECP2 - P217L in pENTR", "sequence-type": "addgene-full", "addgene_id": "216599", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -518388,7 +549864,10 @@ "plasmid_name": "pDONR221-UCP2_STOP", "sequence-type": "addgene-full", "addgene_id": "161452", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -518419,7 +549898,10 @@ "plasmid_name": "p5EsheE1", "sequence-type": "addgene-full", "addgene_id": "90116", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attL4", @@ -518450,7 +549932,10 @@ "plasmid_name": "pLenti-CMV-DNAJC5 (L115R)", "sequence-type": "addgene-full", "addgene_id": "205728", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.85837", + "https://www.ncbi.nlm.nih.gov/pubmed/36626307" + ], "kit": null, "att_sites": [ "attB1", @@ -518515,7 +550000,10 @@ "plasmid_name": "pDEST17-Ctdnep1_C-ter", "sequence-type": "addgene-full", "addgene_id": "196525", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "att_sites": [ "attB1", @@ -518549,7 +550037,9 @@ "plasmid_name": "pMpGWB217", "sequence-type": "depositor-full", "addgene_id": "68608", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -518596,7 +550086,10 @@ "plasmid_name": "pGL4_EGR1p-BC1485-luc2", "sequence-type": "addgene-full", "addgene_id": "214649", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -518640,7 +550133,10 @@ "plasmid_name": "MAC_N_LHX6", "sequence-type": "addgene-full", "addgene_id": "167779", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -518685,7 +550181,10 @@ "plasmid_name": "pAC8_PH-10His-Nter-GWs-Lox (VE5588)", "sequence-type": "addgene-full", "addgene_id": "161806", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-021-04715-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35132103" + ], "kit": null, "att_sites": [ "attR1", @@ -518729,7 +550228,10 @@ "plasmid_name": "pDONR223_ACTG1_p.K61E", "sequence-type": "addgene-full", "addgene_id": "81397", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -518761,7 +550263,10 @@ "plasmid_name": "pCFJ2453 - [1-2] ENTR - Fluor - ce-mCardinal(900bp PATCs, NLS, no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159863", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -518794,7 +550299,10 @@ "plasmid_name": "pHAGE-PIK3CA-P471L", "sequence-type": "addgene-full", "addgene_id": "116523", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -518848,7 +550356,10 @@ "plasmid_name": "pDONR221_SLC5A9", "sequence-type": "addgene-full", "addgene_id": "132230", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -518880,7 +550391,10 @@ "plasmid_name": "pENTR4 PARP2 E614Q", "sequence-type": "addgene-full", "addgene_id": "192545", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koac261", + "https://www.ncbi.nlm.nih.gov/pubmed/35980152" + ], "kit": null, "att_sites": [ "attL1", @@ -518904,7 +550418,10 @@ "plasmid_name": "pDONR223_MAPK1_WT", "sequence-type": "addgene-full", "addgene_id": "82145", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -518935,7 +550452,10 @@ "plasmid_name": "MRAP_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176937", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -518987,7 +550507,10 @@ "plasmid_name": "pLenti-jAspSnFR3-mRuby3", "sequence-type": "addgene-full", "addgene_id": "203498", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "att_sites": [ "attB1", @@ -519051,7 +550574,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (C21Y)", "sequence-type": "addgene-full", "addgene_id": "119304", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "att_sites": [ "attB1", @@ -519103,7 +550629,10 @@ "plasmid_name": "pmCellFree_KA1 ZIKV E", "sequence-type": "addgene-full", "addgene_id": "145341", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -519147,7 +550676,10 @@ "plasmid_name": "C417-E03: attB4-polyhedrinp>His6-GST-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162934", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -519184,7 +550716,10 @@ "plasmid_name": "pDONR221-SLC26A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161174", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -519215,7 +550750,10 @@ "plasmid_name": "pHAGE-RAF1-Q422R", "sequence-type": "addgene-full", "addgene_id": "116658", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -519269,7 +550807,10 @@ "plasmid_name": "pPB-cT3G-cERP2-ATF4", "sequence-type": "addgene-full", "addgene_id": "192911", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "att_sites": [ "attB1", @@ -519316,7 +550857,10 @@ "plasmid_name": "pENTR-R4R3-mEGFP-N", "sequence-type": "depositor-full", "addgene_id": "113746", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -519328,7 +550872,10 @@ "plasmid_name": "mg319", "sequence-type": "depositor-full", "addgene_id": "73367", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb2915", + "https://www.ncbi.nlm.nih.gov/pubmed/24561618" + ], "kit": null, "att_sites": [ "attB1", @@ -519372,7 +550919,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP3 Cys857Ala_nostop", "sequence-type": "addgene-full", "addgene_id": "154029", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -519396,7 +550946,6 @@ "plasmid_name": "R777-E192 Hs.PRKAA1-nostop", "sequence-type": "depositor-full", "addgene_id": "70476", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -519424,7 +550973,10 @@ "plasmid_name": "dTAG NLRP1 P1214R", "sequence-type": "addgene-full", "addgene_id": "166826", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "att_sites": [ "attB1", @@ -519485,7 +551037,10 @@ "plasmid_name": "pSC5", "sequence-type": "addgene-full", "addgene_id": "104779", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "att_sites": [ "attR1", @@ -519526,7 +551081,10 @@ "plasmid_name": "pGC22", "sequence-type": "depositor-full", "addgene_id": "19681", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "att_sites": [ "attL1", @@ -519557,7 +551115,10 @@ "plasmid_name": "pMuLE ENTR 7SK-miR-30 R4-R3", "sequence-type": "depositor-full", "addgene_id": "62121", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -519590,7 +551151,10 @@ "plasmid_name": "pHAGE-PDGFRA-R558C", "sequence-type": "addgene-full", "addgene_id": "116451", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -519640,7 +551204,10 @@ "plasmid_name": "pDONR221_SLC25A21", "sequence-type": "addgene-full", "addgene_id": "132039", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -519671,7 +551238,10 @@ "plasmid_name": "2HA-pDEST-C", "sequence-type": "addgene-full", "addgene_id": "118374", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "att_sites": [ "attR1", @@ -519719,7 +551289,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Bth", "sequence-type": "addgene-full", "addgene_id": "129686", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "att_sites": [ "attL2", @@ -519749,7 +551322,10 @@ "plasmid_name": "R989-X13-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) Q61R", "sequence-type": "addgene-full", "addgene_id": "159545", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -519795,7 +551371,10 @@ "plasmid_name": "pYPQ166-SpRY", "sequence-type": "addgene-full", "addgene_id": "161520", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-00827-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33398158" + ], "kit": null, "att_sites": [ "attL1", @@ -519828,7 +551407,10 @@ "plasmid_name": "MAC_C_TOM20", "sequence-type": "addgene-full", "addgene_id": "111678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -519873,7 +551455,6 @@ "plasmid_name": "p667-UBC-ALPK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198009", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -519939,7 +551520,10 @@ "plasmid_name": "pLenti6.3/TO/CD9-GFP", "sequence-type": "addgene-full", "addgene_id": "104402", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymthe.2017.11.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29221804" + ], "kit": null, "att_sites": [ "attB1", @@ -520003,7 +551587,10 @@ "plasmid_name": "pAG305GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14138", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -520059,7 +551646,6 @@ "plasmid_name": "pDONR221-TMPRSS11D", "sequence-type": "addgene-full", "addgene_id": "158447", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -520090,7 +551676,10 @@ "plasmid_name": "THOC3", "sequence-type": "addgene-full", "addgene_id": "156082", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -520133,7 +551722,9 @@ "plasmid_name": "pCK123 pDESTattB_exorh:mCerulean", "sequence-type": "addgene-full", "addgene_id": "213512", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.12.08.570868" + ], "kit": null, "att_sites": [ "attR3", @@ -520182,7 +551773,10 @@ "plasmid_name": "pMx/ATP10D-HA", "sequence-type": "addgene-full", "addgene_id": "209234", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "att_sites": [ "attB1", @@ -520217,7 +551811,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-wt", "sequence-type": "depositor-full", "addgene_id": "46695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46695.depositor-full.gb" }, @@ -520226,7 +551823,10 @@ "plasmid_name": "pLVpuro-CMV-N-3xFLAG", "sequence-type": "addgene-full", "addgene_id": "123223", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attR1", @@ -520289,7 +551889,9 @@ "plasmid_name": "p3E tdTomato", "sequence-type": "addgene-full", "addgene_id": "135210", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "att_sites": [ "attL3", @@ -520321,7 +551923,10 @@ "plasmid_name": "pRU323", "sequence-type": "addgene-full", "addgene_id": "167690", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -520368,7 +551973,10 @@ "plasmid_name": "pDONR221_SLCO1A2", "sequence-type": "addgene-full", "addgene_id": "132176", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -520399,7 +552007,10 @@ "plasmid_name": "pDONR221-kcnk18", "sequence-type": "addgene-full", "addgene_id": "209000", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "att_sites": [ "attL1", @@ -520430,7 +552041,9 @@ "plasmid_name": "Shim_AspRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202647", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "att_sites": [ "attB1", @@ -520469,7 +552082,10 @@ "plasmid_name": "pDONR223_CREB1_WT", "sequence-type": "addgene-full", "addgene_id": "82203", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82203.addgene-full.gb" }, @@ -520478,7 +552094,6 @@ "plasmid_name": "R777-E154 Hs.PAK4-nostop", "sequence-type": "depositor-full", "addgene_id": "70438", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -520506,7 +552121,10 @@ "plasmid_name": "pDONR221-Hyg", "sequence-type": "depositor-full", "addgene_id": "48994", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2180-9-90", + "https://www.ncbi.nlm.nih.gov/pubmed/19432966" + ], "kit": null, "att_sites": [ "attL1", @@ -520538,7 +552156,10 @@ "plasmid_name": "GNAS_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176991", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -520593,7 +552214,10 @@ "plasmid_name": "pAG306GPD-ccdB-HA", "sequence-type": "addgene-full", "addgene_id": "14236", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -520648,7 +552272,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP7", "sequence-type": "addgene-full", "addgene_id": "169381", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -520691,7 +552314,10 @@ "plasmid_name": "MAC_C_DUX4", "sequence-type": "addgene-full", "addgene_id": "187799", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -520736,7 +552362,10 @@ "plasmid_name": "pDONR221-TMEM241", "sequence-type": "addgene-full", "addgene_id": "132296", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -520767,7 +552396,10 @@ "plasmid_name": "pAG416GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14411", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -520829,7 +552461,10 @@ "plasmid_name": "pENTR D-TOPO-C3_33", "sequence-type": "addgene-full", "addgene_id": "60275", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -520860,7 +552495,10 @@ "plasmid_name": "pHAGE-PIK3R1-D560G", "sequence-type": "addgene-full", "addgene_id": "116585", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -520911,7 +552549,10 @@ "plasmid_name": "pAM PAT-ProCPC GW", "sequence-type": "depositor-full", "addgene_id": "79757", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094698", + "https://www.ncbi.nlm.nih.gov/pubmed/23900543" + ], "kit": null, "att_sites": [ "attR1", @@ -520943,7 +552584,6 @@ "plasmid_name": "pMH-EBFP", "sequence-type": "addgene-full", "addgene_id": "161714", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -520983,7 +552623,10 @@ "plasmid_name": "pAG424GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14176", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -521045,7 +552688,10 @@ "plasmid_name": "pDONR223_OR2T33_p.L60P", "sequence-type": "addgene-full", "addgene_id": "81331", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -521077,7 +552723,10 @@ "plasmid_name": "pDONR223_RAC1_p.Q61L", "sequence-type": "addgene-full", "addgene_id": "82178", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -521107,7 +552756,10 @@ "plasmid_name": "C234-E05: attB2r-V5-attB3", "sequence-type": "addgene-full", "addgene_id": "162909", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -521137,7 +552789,10 @@ "plasmid_name": "pKI-cjPLP1e2-A39T", "sequence-type": "addgene-full", "addgene_id": "129752", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-018-37990-w", + "https://www.ncbi.nlm.nih.gov/pubmed/30728412" + ], "kit": null, "att_sites": [ "attB1", @@ -521183,7 +552838,10 @@ "plasmid_name": "pDONR223_MAPK14_WT", "sequence-type": "addgene-full", "addgene_id": "82298", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -521213,7 +552871,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PAK6_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170595", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -521279,7 +552936,10 @@ "plasmid_name": "pHAGE-RET-E623K", "sequence-type": "addgene-full", "addgene_id": "116665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -521333,7 +552993,10 @@ "plasmid_name": "SITS-ccdb", "sequence-type": "addgene-full", "addgene_id": "141067", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB4", @@ -521380,7 +553043,6 @@ "plasmid_name": "pAG416GALL-HAV_3C", "sequence-type": "addgene-full", "addgene_id": "203481", - "references": [], "kit": null, "att_sites": [ "attB1" @@ -521427,7 +553089,10 @@ "plasmid_name": "pDest-663 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161884", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -521493,7 +553158,10 @@ "plasmid_name": "pDONR223_REG3A_p.P109S", "sequence-type": "addgene-full", "addgene_id": "81315", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -521525,7 +553193,10 @@ "plasmid_name": "pENTR D-TOPO-C2_10", "sequence-type": "depositor-full", "addgene_id": "60250", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -521556,7 +553227,10 @@ "plasmid_name": "pDONR221_SLC5A12", "sequence-type": "addgene-full", "addgene_id": "132229", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -521587,7 +553261,10 @@ "plasmid_name": "pDONR223-PDK1", "sequence-type": "addgene-full", "addgene_id": "23804", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -521619,7 +553296,10 @@ "plasmid_name": "pDONR223-ZNF770", "sequence-type": "addgene-full", "addgene_id": "88562", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -521648,7 +553328,10 @@ "plasmid_name": "pENTR-L3-Cas9-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141043", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -521679,7 +553362,10 @@ "plasmid_name": "pHAGE-PTPN11-E69K", "sequence-type": "addgene-full", "addgene_id": "116641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -521733,7 +553419,10 @@ "plasmid_name": "pPB-cT3G-cERP2-KLF4", "sequence-type": "addgene-full", "addgene_id": "192908", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192908.addgene-full.gb" }, @@ -521742,7 +553431,10 @@ "plasmid_name": "pUC18-mini-Tn7T-Gm-GW", "sequence-type": "depositor-full", "addgene_id": "64961", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth765", + "https://www.ncbi.nlm.nih.gov/pubmed/15908923" + ], "kit": null, "att_sites": [ "attR1", @@ -521780,7 +553472,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS5", "sequence-type": "addgene-full", "addgene_id": "145358", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -521815,7 +553510,10 @@ "plasmid_name": "pJEP228-Lenti-CMV-GFP-GluN2B-WPRE-pA", "sequence-type": "addgene-full", "addgene_id": "84277", - "references": [], + "references": [ + "https://doi.org/10.1186/s13041-015-0100-7", + "https://www.ncbi.nlm.nih.gov/pubmed/25887710" + ], "kit": null, "att_sites": [ "attB1", @@ -521876,7 +553574,10 @@ "plasmid_name": "pDL63", "sequence-type": "addgene-full", "addgene_id": "175887", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -521900,7 +553601,10 @@ "plasmid_name": "pDONR223_PRKCE_WT", "sequence-type": "addgene-full", "addgene_id": "82227", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -521930,7 +553634,10 @@ "plasmid_name": "pGL4_EGR1p-BC1486-luc2", "sequence-type": "addgene-full", "addgene_id": "214650", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -521973,7 +553680,10 @@ "plasmid_name": "pENTR223-BGLF3.5", "sequence-type": "addgene-full", "addgene_id": "195775", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -522002,7 +553712,6 @@ "plasmid_name": "pBPX_C1", "sequence-type": "depositor-full", "addgene_id": "33298", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -522046,7 +553755,10 @@ "plasmid_name": "Flag-HA-OTUB2", "sequence-type": "addgene-full", "addgene_id": "22552", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "att_sites": [ "attB1", @@ -522091,7 +553803,10 @@ "plasmid_name": "pME-ReaChR-citrine", "sequence-type": "addgene-full", "addgene_id": "169045", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2020.05.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32516597" + ], "kit": null, "att_sites": [ "attL1", @@ -522126,7 +553841,10 @@ "plasmid_name": "pDONR221_SLC26A7", "sequence-type": "addgene-full", "addgene_id": "132152", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -522157,7 +553875,6 @@ "plasmid_name": "DDX3X - E388G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216580", - "references": [], "kit": null, "file": "data/addgene_plasmids/216580.addgene-full.gb" }, @@ -522166,7 +553883,10 @@ "plasmid_name": "pMH-SFB-DYRK1A", "sequence-type": "addgene-full", "addgene_id": "101770", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkae574", + "https://www.ncbi.nlm.nih.gov/pubmed/38966995" + ], "kit": null, "att_sites": [ "attB1", @@ -522206,7 +553926,10 @@ "plasmid_name": "pcDNA3.1 NL-BCL2L1", "sequence-type": "addgene-full", "addgene_id": "113458", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "att_sites": [ "attB1", @@ -522257,7 +553980,10 @@ "plasmid_name": "pEX-YFP-STIM1-deltaK", "sequence-type": "depositor-full", "addgene_id": "18861", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702866104", + "https://www.ncbi.nlm.nih.gov/pubmed/17517596" + ], "kit": null, "att_sites": [ "attB1", @@ -522300,7 +554026,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-N17-puro", "sequence-type": "addgene-full", "addgene_id": "156172", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "att_sites": [ "attB1", @@ -522360,7 +554089,10 @@ "plasmid_name": "pDEST-DHFR F[3]-N (LEU2)", "sequence-type": "addgene-full", "addgene_id": "177798", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac045", + "https://www.ncbi.nlm.nih.gov/pubmed/35137167" + ], "kit": null, "att_sites": [ "attR1", @@ -522411,7 +554143,10 @@ "plasmid_name": "pHAGE TRE dCas9", "sequence-type": "addgene-full", "addgene_id": "50915", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.103341", + "https://www.ncbi.nlm.nih.gov/pubmed/24346702" + ], "kit": null, "att_sites": [ "attB1", @@ -522469,7 +554204,10 @@ "plasmid_name": "MAC_N_IRF1", "sequence-type": "addgene-full", "addgene_id": "167760", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -522514,7 +554252,6 @@ "plasmid_name": "pLEX307-CTSB-puro", "sequence-type": "addgene-full", "addgene_id": "158463", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -522574,7 +554311,10 @@ "plasmid_name": "pENTR2B-dCas9-KRAB", "sequence-type": "addgene-full", "addgene_id": "115547", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.03.076", + "https://www.ncbi.nlm.nih.gov/pubmed/30995470" + ], "kit": null, "att_sites": [ "attL1", @@ -522604,7 +554344,10 @@ "plasmid_name": "pDONR221_SLC35E2A", "sequence-type": "addgene-full", "addgene_id": "132086", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -522635,7 +554378,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::RfA-HA", "sequence-type": "addgene-full", "addgene_id": "186410", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "att_sites": [ "attR1", @@ -522680,7 +554426,10 @@ "plasmid_name": "pJH120_pE12_HyPep_emGFP", "sequence-type": "addgene-full", "addgene_id": "160406", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "att_sites": [ "attL1", @@ -522715,7 +554464,10 @@ "plasmid_name": "pAG425GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14273", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -522776,7 +554528,10 @@ "plasmid_name": "pMuLE ENTR SFFV L1-R5", "sequence-type": "depositor-full", "addgene_id": "62097", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL1", @@ -522807,7 +554562,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RIOK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214464", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -522873,7 +554627,10 @@ "plasmid_name": "pENTR2b-mScarlet", "sequence-type": "addgene-full", "addgene_id": "207961", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2304288120", + "https://www.ncbi.nlm.nih.gov/pubmed/37844244" + ], "kit": null, "att_sites": [ "attL1", @@ -522900,7 +554657,10 @@ "plasmid_name": "pCAG/ATP8B2-HA", "sequence-type": "addgene-full", "addgene_id": "209210", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "att_sites": [ "attB1", @@ -522944,7 +554704,9 @@ "plasmid_name": "pMpGWB223", "sequence-type": "depositor-full", "addgene_id": "68614", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68614.depositor-full.gb" }, @@ -522953,7 +554715,10 @@ "plasmid_name": "pDONR223 LC3B2 no-stop", "sequence-type": "addgene-full", "addgene_id": "123207", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -522983,7 +554748,10 @@ "plasmid_name": "pDestTol2pA2-U6:gRNA", "sequence-type": "addgene-full", "addgene_id": "63157", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.01.032", + "https://www.ncbi.nlm.nih.gov/pubmed/25752963" + ], "kit": null, "att_sites": [ "attR3", @@ -523025,7 +554793,6 @@ "plasmid_name": "pSMPUW_6.4_M1-gateway-V5", "sequence-type": "addgene-full", "addgene_id": "128440", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -523067,7 +554834,6 @@ "plasmid_name": "pDEST-R4R3-MC1DTA", "sequence-type": "addgene-full", "addgene_id": "139521", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -523103,7 +554869,10 @@ "plasmid_name": "pAC150-TEX264-GFP", "sequence-type": "addgene-full", "addgene_id": "201931", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "att_sites": [ "attB1", @@ -523161,7 +554930,10 @@ "plasmid_name": "pHAGE-PIK3CA-E453Q", "sequence-type": "addgene-full", "addgene_id": "116475", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -523215,7 +554987,10 @@ "plasmid_name": "pDONR223-ZNF804B", "sequence-type": "addgene-full", "addgene_id": "88756", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -523244,7 +555019,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF7B", "sequence-type": "addgene-full", "addgene_id": "141277", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -523273,7 +555051,10 @@ "plasmid_name": "pMpGWB106-MTS-Citrine", "sequence-type": "depositor-full", "addgene_id": "79135", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "att_sites": [ "attB1", @@ -523318,7 +555099,10 @@ "plasmid_name": "hsp70: mKate2 dynactin1-811", "sequence-type": "addgene-full", "addgene_id": "105970", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21206", + "https://www.ncbi.nlm.nih.gov/pubmed/26879757" + ], "kit": null, "att_sites": [ "attB1", @@ -523364,7 +555148,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF14(9c)", "sequence-type": "depositor-full", "addgene_id": "168887", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -523393,7 +555180,10 @@ "plasmid_name": "pDONR221-SLC24A5_STOP", "sequence-type": "depositor-full", "addgene_id": "161168", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -523424,7 +555214,10 @@ "plasmid_name": "PB-CT3G-CERP2-MG-IRES2-mCherry", "sequence-type": "addgene-full", "addgene_id": "175507", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "att_sites": [ "attR1", @@ -523473,7 +555266,10 @@ "plasmid_name": "R713-M88-303: CMV51p> Halotag-Hs.HRAS", "sequence-type": "addgene-full", "addgene_id": "159681", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "att_sites": [ "attB1", @@ -523531,7 +555327,10 @@ "plasmid_name": "pLENTI EF1alpha FLAG/HA-PALI1", "sequence-type": "addgene-full", "addgene_id": "114445", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "att_sites": [ "attB1", @@ -523598,7 +555397,10 @@ "plasmid_name": "pYPQ265N1", "sequence-type": "addgene-full", "addgene_id": "173998", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "att_sites": [ "attL1", @@ -523634,7 +555436,10 @@ "plasmid_name": "R701-X53-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) G12C", "sequence-type": "addgene-full", "addgene_id": "159561", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "att_sites": [ "attB1", @@ -523681,7 +555486,10 @@ "plasmid_name": "pHAGE-STK19", "sequence-type": "addgene-full", "addgene_id": "116795", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -523731,7 +555539,10 @@ "plasmid_name": "pHAGE-GTF2IRD1__ALK", "sequence-type": "addgene-full", "addgene_id": "116821", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -523782,7 +555593,10 @@ "plasmid_name": "pDONR223_OR2G6_p.N42S", "sequence-type": "addgene-full", "addgene_id": "81328", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -523814,7 +555628,10 @@ "plasmid_name": "pDONR223_RPS6KB1_WT", "sequence-type": "addgene-full", "addgene_id": "82161", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -523843,7 +555660,10 @@ "plasmid_name": "pDONR221_SLC44A2", "sequence-type": "addgene-full", "addgene_id": "132214", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -523874,7 +555694,10 @@ "plasmid_name": "pDONR223-PIK4CB", "sequence-type": "addgene-full", "addgene_id": "23839", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -523906,7 +555729,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NRF2-E79Q", "sequence-type": "addgene-full", "addgene_id": "207813", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "att_sites": [ "attB1", @@ -523972,7 +555798,10 @@ "plasmid_name": "pUBQ10-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209362", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "att_sites": [ "attR1", @@ -524017,7 +555846,9 @@ "plasmid_name": "piggyBac-rtTA (4th_Gen)-NFIB-SOX9-IRES-mKate2 (VK_1244)", "sequence-type": "addgene-full", "addgene_id": "209082", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.11.08.515615" + ], "kit": null, "att_sites": [ "attB1", @@ -524073,7 +555904,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3C WT", "sequence-type": "addgene-full", "addgene_id": "123095", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -524117,7 +555951,10 @@ "plasmid_name": "pAd-PR.CC9", "sequence-type": "addgene-full", "addgene_id": "192935", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "att_sites": [ "attB1", @@ -524158,7 +555995,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV NS3", "sequence-type": "addgene-full", "addgene_id": "145365", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "att_sites": [ "attB1", @@ -524201,7 +556041,10 @@ "plasmid_name": "POLN_pDEST17", "sequence-type": "depositor-full", "addgene_id": "64885", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkq048", + "https://www.ncbi.nlm.nih.gov/pubmed/20144948" + ], "kit": null, "att_sites": [ "attB1", @@ -524237,7 +556080,10 @@ "plasmid_name": "C234-E06: attB2r-FLAG-attB3", "sequence-type": "addgene-full", "addgene_id": "162910", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -524267,7 +556113,10 @@ "plasmid_name": "pDONR223_TSC2_WT", "sequence-type": "addgene-full", "addgene_id": "82281", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -524295,7 +556144,10 @@ "plasmid_name": "pDONR221-NIPA1_STOP", "sequence-type": "addgene-full", "addgene_id": "161476", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -524326,7 +556178,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-2", "sequence-type": "depositor-full", "addgene_id": "46689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -524377,7 +556232,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj13-EGFP", "sequence-type": "addgene-full", "addgene_id": "164940", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "att_sites": [ "attB1", @@ -524420,7 +556278,10 @@ "plasmid_name": "GFP-TAF1", "sequence-type": "addgene-full", "addgene_id": "65395", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "att_sites": [ "attB1", @@ -524473,7 +556334,6 @@ "plasmid_name": "His8:MBP-tev-Gly-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83383", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -524513,7 +556373,10 @@ "plasmid_name": "Active Wnt9A-V5", "sequence-type": "depositor-full", "addgene_id": "43820", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "att_sites": [ "attB1" @@ -524561,7 +556424,10 @@ "plasmid_name": "pRATIO2251", "sequence-type": "addgene-full", "addgene_id": "141305", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -524610,7 +556476,10 @@ "plasmid_name": "pHAGE-PIK3CA-K111N", "sequence-type": "addgene-full", "addgene_id": "116507", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -524665,7 +556534,10 @@ "plasmid_name": "pEF5B-FRT-cilia-APEX", "sequence-type": "depositor-full", "addgene_id": "73186", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.015", + "https://www.ncbi.nlm.nih.gov/pubmed/26585297" + ], "kit": null, "att_sites": [ "attB1", @@ -524715,7 +556587,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF10", "sequence-type": "addgene-full", "addgene_id": "169398", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -524758,7 +556629,10 @@ "plasmid_name": "pDONR P4-P1R-V5-6xHis", "sequence-type": "depositor-full", "addgene_id": "48346", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -524795,7 +556669,10 @@ "plasmid_name": "pCFJ2249 - [1-2] ENTR - Fluor - ce-GFP (1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159847", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attL1", @@ -524826,7 +556703,10 @@ "plasmid_name": "DsRed2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176988", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -524882,7 +556762,10 @@ "plasmid_name": "G-RCAS (A)", "sequence-type": "addgene-full", "addgene_id": "15182", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-213X-6-2", + "https://www.ncbi.nlm.nih.gov/pubmed/16426460" + ], "kit": null, "att_sites": [ "attR1", @@ -524917,7 +556800,10 @@ "plasmid_name": "pHAGE-EPHA3", "sequence-type": "addgene-full", "addgene_id": "116733", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -524967,7 +556853,10 @@ "plasmid_name": "pAD-CMV-STAT5B-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83257", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "att_sites": [ "attB1", @@ -525010,7 +556899,6 @@ "plasmid_name": "p667-UBC-DYRK2-FullLength-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198010", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -525075,7 +556963,10 @@ "plasmid_name": "MAC_C_AOX", "sequence-type": "addgene-full", "addgene_id": "111661", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -525120,7 +557011,10 @@ "plasmid_name": "pYPQ265E3", "sequence-type": "addgene-full", "addgene_id": "164720", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "att_sites": [ "attL1", @@ -525156,7 +557050,10 @@ "plasmid_name": "pDONR223_CBFB_p.R151H", "sequence-type": "addgene-full", "addgene_id": "81267", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -525188,7 +557085,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CSNK1G2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214459", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -525254,7 +557150,6 @@ "plasmid_name": "pEFS 4r-3r", "sequence-type": "depositor-full", "addgene_id": "20100", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -525285,7 +557180,10 @@ "plasmid_name": "pIRES-Puro-MGMT", "sequence-type": "addgene-full", "addgene_id": "187654", - "references": [], + "references": [ + "https://doi.org/10.3390/cancers14153572", + "https://www.ncbi.nlm.nih.gov/pubmed/35892832" + ], "kit": null, "att_sites": [ "attB1", @@ -525330,7 +557228,10 @@ "plasmid_name": "pRU294", "sequence-type": "addgene-full", "addgene_id": "167689", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "att_sites": [ "attR1", @@ -525375,7 +557276,6 @@ "plasmid_name": "IDG_CLIC2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161642", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -525434,7 +557334,10 @@ "plasmid_name": "pME DN-E-cadherin", "sequence-type": "addgene-full", "addgene_id": "135209", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2016.09.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27760340" + ], "kit": null, "file": "data/addgene_plasmids/135209.addgene-full.gb" }, @@ -525443,7 +557346,10 @@ "plasmid_name": "pDONR207-MUM2sp-ADPG2", "sequence-type": "addgene-full", "addgene_id": "170723", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcab077", + "https://www.ncbi.nlm.nih.gov/pubmed/34059917" + ], "kit": null, "att_sites": [ "attL1", @@ -525467,7 +557373,10 @@ "plasmid_name": "pGL4.23-GW", "sequence-type": "addgene-full", "addgene_id": "60323", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attR1", @@ -525500,7 +557409,6 @@ "plasmid_name": "R777-E140 Hs.NF1-nostop", "sequence-type": "depositor-full", "addgene_id": "70424", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -525527,7 +557435,10 @@ "plasmid_name": "pAG303GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14397", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -525586,7 +557497,10 @@ "plasmid_name": "pLX313-Renilla luciferase", "sequence-type": "addgene-full", "addgene_id": "118016", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-018-0204-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30224644" + ], "kit": null, "att_sites": [ "attB1", @@ -525645,7 +557559,10 @@ "plasmid_name": "pMuLE ENTR CMV CreERT2 R4-R3", "sequence-type": "depositor-full", "addgene_id": "62173", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attR3", @@ -525681,7 +557598,10 @@ "plasmid_name": "pHAGE-PDGFRA-G185W", "sequence-type": "addgene-full", "addgene_id": "116448", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -525731,7 +557651,10 @@ "plasmid_name": "pEntry_HCoV-229E-ORF4a", "sequence-type": "depositor-full", "addgene_id": "168963", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -525760,7 +557683,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP5 Cys146Ala_nostop", "sequence-type": "addgene-full", "addgene_id": "154030", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154030.addgene-full.gb" }, @@ -525769,7 +557695,10 @@ "plasmid_name": "pCPP5617", "sequence-type": "addgene-full", "addgene_id": "128706", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "att_sites": [ "attL1", @@ -525800,7 +557729,10 @@ "plasmid_name": "pDONR221_SLC26A3", "sequence-type": "addgene-full", "addgene_id": "132020", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -525831,7 +557763,6 @@ "plasmid_name": "Hs.KRAS4b G12R", "sequence-type": "depositor-full", "addgene_id": "83143", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -525857,7 +557788,10 @@ "plasmid_name": "LZRS-Flag_EZH2_ER", "sequence-type": "addgene-full", "addgene_id": "26111", - "references": [], + "references": [ + "https://doi.org/10.1038/nature08975", + "https://www.ncbi.nlm.nih.gov/pubmed/20393566" + ], "kit": null, "att_sites": [ "attB1", @@ -525893,7 +557827,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp3", "sequence-type": "addgene-full", "addgene_id": "168930", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -525922,7 +557859,10 @@ "plasmid_name": "pLenti-TO/CMV-puro-DD-PAmCherry1-KRas G12D", "sequence-type": "addgene-full", "addgene_id": "177320", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1509123112", + "https://www.ncbi.nlm.nih.gov/pubmed/26080442" + ], "kit": null, "att_sites": [ "attB1", @@ -525991,7 +557931,10 @@ "plasmid_name": "pHAGE-BRAF-L618F", "sequence-type": "addgene-full", "addgene_id": "116182", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -526046,7 +557989,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 E_stop", "sequence-type": "addgene-full", "addgene_id": "168684", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -526075,7 +558021,10 @@ "plasmid_name": "TFORF3026", "sequence-type": "addgene-full", "addgene_id": "144502", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -526135,7 +558084,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK10_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189874", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -526201,7 +558149,10 @@ "plasmid_name": "pDONR223_PIK3CA_WT", "sequence-type": "addgene-full", "addgene_id": "81736", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -526233,7 +558184,10 @@ "plasmid_name": "pDONR223_FAM196A_WT", "sequence-type": "addgene-full", "addgene_id": "81882", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -526265,7 +558219,10 @@ "plasmid_name": "p{Mhc-F4-678-DsRed::FRT-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182187", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attB1", @@ -526306,7 +558263,10 @@ "plasmid_name": "pDONR221-SLC35A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161313", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -526337,7 +558297,10 @@ "plasmid_name": "R620-M06-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-529)-3C-His8-SBP K417N/E484K/N501Y", "sequence-type": "addgene-full", "addgene_id": "170192", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "att_sites": [ "attB1", @@ -526393,7 +558356,6 @@ "plasmid_name": "R777-E226 Hs.RAPGEF2-nostop", "sequence-type": "depositor-full", "addgene_id": "70510", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -526421,7 +558383,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF7a_stop", "sequence-type": "addgene-full", "addgene_id": "168564", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -526450,7 +558415,10 @@ "plasmid_name": "pLX311-SHOC2-V5", "sequence-type": "addgene-full", "addgene_id": "134521", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.08.090", + "https://www.ncbi.nlm.nih.gov/pubmed/31577942" + ], "kit": null, "att_sites": [ "attB1", @@ -526508,7 +558476,10 @@ "plasmid_name": "pHAGE-EGFR-H773_V774insNPH", "sequence-type": "addgene-full", "addgene_id": "116262", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -526562,7 +558533,10 @@ "plasmid_name": "TFORF3480", "sequence-type": "addgene-full", "addgene_id": "144956", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -526622,7 +558596,10 @@ "plasmid_name": "pTol1-UAS-nlstdTomato", "sequence-type": "depositor-full", "addgene_id": "67693", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "att_sites": [ "attB1", @@ -526674,7 +558651,10 @@ "plasmid_name": "pBi2FC-N-MPK8-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216138", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attB1", @@ -526724,7 +558704,6 @@ "plasmid_name": "pENTR L1-13XLexAop2-L4", "sequence-type": "depositor-full", "addgene_id": "41434", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -526757,7 +558736,10 @@ "plasmid_name": "TFORF3203", "sequence-type": "addgene-full", "addgene_id": "144679", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -526817,7 +558799,10 @@ "plasmid_name": "plenti-CAG-gate-FLAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "107398", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attR1", @@ -526883,7 +558868,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK7_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158194", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -526949,7 +558933,10 @@ "plasmid_name": "pCAM-kan-R4R3", "sequence-type": "depositor-full", "addgene_id": "71275", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "att_sites": [ "attR3", @@ -527000,7 +558987,10 @@ "plasmid_name": "pDONR221-SLC52A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161068", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -527031,7 +559021,10 @@ "plasmid_name": "LC201: pMVP/PB/Puro-DEST", "sequence-type": "addgene-full", "addgene_id": "121874", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -527073,7 +559066,10 @@ "plasmid_name": "beta-catenin (S33A, S37A, T41A, S45A)-pcw107", "sequence-type": "addgene-full", "addgene_id": "64612", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "att_sites": [ "attB1", @@ -527133,7 +559129,10 @@ "plasmid_name": "pCW-eGFP-FHA", "sequence-type": "addgene-full", "addgene_id": "114129", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "att_sites": [ "attB1", @@ -527191,7 +559190,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF7b", "sequence-type": "depositor-full", "addgene_id": "168857", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -527220,7 +559222,10 @@ "plasmid_name": "pAAV2-SynTetOff-FGL", "sequence-type": "addgene-full", "addgene_id": "190234", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "att_sites": [ "attB1", @@ -527262,7 +559267,10 @@ "plasmid_name": "pDONR223_CPXCR1_WT", "sequence-type": "addgene-full", "addgene_id": "81819", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -527294,7 +559302,10 @@ "plasmid_name": "pHAGE-AXL-L423Q", "sequence-type": "addgene-full", "addgene_id": "116119", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -527343,7 +559354,10 @@ "plasmid_name": "pDONR221-ZNF197", "sequence-type": "depositor-full", "addgene_id": "101547", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -527374,7 +559388,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP13_nostop", "sequence-type": "addgene-full", "addgene_id": "149315", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -527403,7 +559420,10 @@ "plasmid_name": "p3E-Clover", "sequence-type": "addgene-full", "addgene_id": "126572", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201905065", + "https://www.ncbi.nlm.nih.gov/pubmed/34633413" + ], "kit": null, "att_sites": [ "attL3", @@ -527436,7 +559456,10 @@ "plasmid_name": "pMOS016: roGFP2-Orp1 H2O2 oxidation sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163058", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "att_sites": [ "attB1", @@ -527499,7 +559522,10 @@ "plasmid_name": "TFORF3123", "sequence-type": "addgene-full", "addgene_id": "144599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -527559,7 +559585,10 @@ "plasmid_name": "pDONR223_DCAF8_p.P156S", "sequence-type": "addgene-full", "addgene_id": "82864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -527588,7 +559617,10 @@ "plasmid_name": "pENTR D-TOPO-C3_39", "sequence-type": "depositor-full", "addgene_id": "60280", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "att_sites": [ "attL1", @@ -527619,7 +559651,10 @@ "plasmid_name": "pDONR223_PIK3CB_p.E497D", "sequence-type": "addgene-full", "addgene_id": "81599", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -527653,7 +559688,10 @@ "plasmid_name": "pDONR221_SLC16A12", "sequence-type": "addgene-full", "addgene_id": "131958", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -527684,7 +559722,10 @@ "plasmid_name": "p3E-rab32a", "sequence-type": "addgene-full", "addgene_id": "109689", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -527715,7 +559756,6 @@ "plasmid_name": "pLenti6.3/Envelope", "sequence-type": "addgene-full", "addgene_id": "120839", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -527774,7 +559814,10 @@ "plasmid_name": "pGMCK-0X750-luxAB-DAS+4", "sequence-type": "depositor-full", "addgene_id": "49517", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "att_sites": [ "attB1", @@ -527809,7 +559852,10 @@ "plasmid_name": "p3E-EHD2b", "sequence-type": "addgene-full", "addgene_id": "109569", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -527840,7 +559886,10 @@ "plasmid_name": "pENTR221-H1-sgGFP1-U6-sgGFP2-7SK-sgGFP3", "sequence-type": "addgene-full", "addgene_id": "87906", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "att_sites": [ "attL1", @@ -527877,7 +559926,10 @@ "plasmid_name": "pDONR223_IDH1_p.R132L", "sequence-type": "addgene-full", "addgene_id": "81679", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -527909,7 +559961,10 @@ "plasmid_name": "ADSS_pLX307", "sequence-type": "addgene-full", "addgene_id": "98316", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "att_sites": [ "attB1" @@ -527967,7 +560022,10 @@ "plasmid_name": "pPN10", "sequence-type": "addgene-full", "addgene_id": "114386", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms13272", + "https://www.ncbi.nlm.nih.gov/pubmed/27827362" + ], "kit": null, "att_sites": [ "attB2" @@ -528013,7 +560071,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp6", "sequence-type": "depositor-full", "addgene_id": "168819", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -528042,7 +560103,10 @@ "plasmid_name": "W118-1_hZBTB7B_D35N_R49Q", "sequence-type": "addgene-full", "addgene_id": "180383", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "att_sites": [ "attB1", @@ -528105,7 +560169,10 @@ "plasmid_name": "actc1b-mKate2-rab23", "sequence-type": "addgene-full", "addgene_id": "109612", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -528147,7 +560214,10 @@ "plasmid_name": "TFORF3260", "sequence-type": "addgene-full", "addgene_id": "144736", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -528207,7 +560277,10 @@ "plasmid_name": "pcDNA3_GLP1R-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194380", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -528264,7 +560337,10 @@ "plasmid_name": "pcDNA3.2/V5 mmu-mir-122", "sequence-type": "addgene-full", "addgene_id": "26325", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.1884710", + "https://www.ncbi.nlm.nih.gov/pubmed/20413612" + ], "kit": null, "att_sites": [ "attB1", @@ -528314,7 +560390,10 @@ "plasmid_name": "TFORF3406", "sequence-type": "addgene-full", "addgene_id": "144882", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -528374,7 +560453,10 @@ "plasmid_name": "pDONR221-SLC17A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161127", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -528405,7 +560487,10 @@ "plasmid_name": "pDONR223_FBXW7_p.R658Q", "sequence-type": "addgene-full", "addgene_id": "81502", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -528437,7 +560522,10 @@ "plasmid_name": "p3E-H2B-mCerulean3-P2A-mKOFP2-CAAX", "sequence-type": "depositor-full", "addgene_id": "75177", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -528474,7 +560562,10 @@ "plasmid_name": "SIN-CMV-Ca9-WPRE", "sequence-type": "addgene-full", "addgene_id": "87874", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87874.addgene-full.gb" }, @@ -528483,7 +560574,10 @@ "plasmid_name": "KY901: pMVP (L3-L2) P2A-mCherry + polyA", "sequence-type": "addgene-full", "addgene_id": "121766", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -528520,7 +560614,10 @@ "plasmid_name": "pE2n", "sequence-type": "depositor-full", "addgene_id": "17456", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "att_sites": [ "attL1", @@ -528545,7 +560642,10 @@ "plasmid_name": "pDONR223_RIT1_p.T76insTDLT", "sequence-type": "addgene-full", "addgene_id": "82916", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -528574,7 +560674,6 @@ "plasmid_name": "pCM3.07", "sequence-type": "depositor-full", "addgene_id": "19603", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -528598,7 +560697,10 @@ "plasmid_name": "pSAM2_mCherry_Mesp1", "sequence-type": "addgene-full", "addgene_id": "72687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "att_sites": [ "attB1", @@ -528660,7 +560762,10 @@ "plasmid_name": "pAFMW-Nbr", "sequence-type": "addgene-full", "addgene_id": "188584", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "att_sites": [ "attB1", @@ -528690,7 +560795,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF3a_stop", "sequence-type": "addgene-full", "addgene_id": "168559", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -528719,7 +560827,10 @@ "plasmid_name": "HBM-mVEGF-C-HisTag-pENTR", "sequence-type": "depositor-full", "addgene_id": "64066", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2015.03.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25758709" + ], "kit": null, "att_sites": [ "attL1", @@ -528752,7 +560863,10 @@ "plasmid_name": "pAG426GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14347", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -528815,7 +560929,10 @@ "plasmid_name": "METTL3", "sequence-type": "addgene-full", "addgene_id": "155725", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155725.addgene-full.gb" }, @@ -528824,7 +560941,10 @@ "plasmid_name": "TFORF3168", "sequence-type": "addgene-full", "addgene_id": "144644", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -528884,7 +561004,10 @@ "plasmid_name": "actc1b-mKate2-Rab3b", "sequence-type": "addgene-full", "addgene_id": "109760", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -528926,7 +561049,10 @@ "plasmid_name": "pMuLE (L1-L4) 2X PRE", "sequence-type": "addgene-full", "addgene_id": "206166", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "att_sites": [ "attL1", @@ -528957,7 +561083,10 @@ "plasmid_name": "pENTR1A-GFP-N2 (FR1)", "sequence-type": "depositor-full", "addgene_id": "19364", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "att_sites": [ "attL1", @@ -528987,7 +561116,10 @@ "plasmid_name": "pDONR223_SPAG8_p.P344L", "sequence-type": "addgene-full", "addgene_id": "81470", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -529019,7 +561151,10 @@ "plasmid_name": "pDONR221-SLC1A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161055", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -529050,7 +561185,10 @@ "plasmid_name": "IY601: pMVP/Lenti/Blast-DEST", "sequence-type": "addgene-full", "addgene_id": "121849", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR1", @@ -529107,7 +561245,6 @@ "plasmid_name": "pAM-PAT-ProATE2 GW", "sequence-type": "depositor-full", "addgene_id": "80682", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -529139,7 +561276,10 @@ "plasmid_name": "pDONR223_TNF_WT", "sequence-type": "addgene-full", "addgene_id": "81824", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -529171,7 +561311,10 @@ "plasmid_name": "pDONR223_HAUS1_WT", "sequence-type": "addgene-full", "addgene_id": "81790", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -529203,7 +561346,10 @@ "plasmid_name": "pMOS028E: Entry vector for: Mitycam calcium sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163065", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163065.addgene-full.gb" }, @@ -529212,7 +561358,10 @@ "plasmid_name": "pDEST17-UbE2L3", "sequence-type": "addgene-full", "addgene_id": "15795", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "att_sites": [ "attB1", @@ -529245,7 +561394,10 @@ "plasmid_name": "pHAGE-B2M-M1L", "sequence-type": "addgene-full", "addgene_id": "116124", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -529300,7 +561452,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF9Bwu_nostop", "sequence-type": "addgene-full", "addgene_id": "149328", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -529329,7 +561484,6 @@ "plasmid_name": "R777-E325 Hs.SPRED3", "sequence-type": "depositor-full", "addgene_id": "70609", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -529357,7 +561511,10 @@ "plasmid_name": "pEBTetBl-CLIP-plk4", "sequence-type": "addgene-full", "addgene_id": "136837", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -529403,7 +561560,6 @@ "plasmid_name": "R777-E134 Hs.MLST8-nostop", "sequence-type": "addgene-full", "addgene_id": "70418", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -529431,7 +561587,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hADAM10", "sequence-type": "addgene-full", "addgene_id": "189552", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -529498,7 +561653,10 @@ "plasmid_name": "pDONR223_ERBB2_p.S418T", "sequence-type": "addgene-full", "addgene_id": "82859", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -529527,7 +561685,10 @@ "plasmid_name": "pDONR223-ZNF41", "sequence-type": "addgene-full", "addgene_id": "88033", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -529556,7 +561717,10 @@ "plasmid_name": "TFORF3348", "sequence-type": "addgene-full", "addgene_id": "144824", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -529616,7 +561780,6 @@ "plasmid_name": "R777-E036 Hs.DUSP2-nostop", "sequence-type": "depositor-full", "addgene_id": "70320", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -529644,7 +561807,10 @@ "plasmid_name": "pHAGE-EGFR-T790M", "sequence-type": "addgene-full", "addgene_id": "116310", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -529694,7 +561860,10 @@ "plasmid_name": "pQLinkHD_mVenus", "sequence-type": "addgene-full", "addgene_id": "118861", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "att_sites": [ "attB1", @@ -529734,7 +561903,10 @@ "plasmid_name": "pDONR221_SLC22A6", "sequence-type": "addgene-full", "addgene_id": "131965", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -529765,7 +561937,10 @@ "plasmid_name": "pWS-TK2", "sequence-type": "addgene-full", "addgene_id": "20348", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "att_sites": [ "attR1", @@ -529805,7 +561980,10 @@ "plasmid_name": "TFORF3314", "sequence-type": "addgene-full", "addgene_id": "144790", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -529865,7 +562043,10 @@ "plasmid_name": "TFORF2994", "sequence-type": "addgene-full", "addgene_id": "144470", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -529925,7 +562106,10 @@ "plasmid_name": "p3E-ING2", "sequence-type": "addgene-full", "addgene_id": "109554", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -529956,7 +562140,10 @@ "plasmid_name": "Ad-FOXO1 1-558", "sequence-type": "addgene-full", "addgene_id": "131531", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "att_sites": [ "attB1", @@ -529993,7 +562180,10 @@ "plasmid_name": "pDONR221-kcnj19b", "sequence-type": "addgene-full", "addgene_id": "173149", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -530025,7 +562215,10 @@ "plasmid_name": "pAG413GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14309", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -530087,7 +562280,10 @@ "plasmid_name": "pDONR221-SLC38A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161261", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -530118,7 +562314,10 @@ "plasmid_name": "nls-EGFP", "sequence-type": "addgene-full", "addgene_id": "67652", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "att_sites": [ "attB1", @@ -530163,7 +562362,10 @@ "plasmid_name": "pGWB417", "sequence-type": "depositor-full", "addgene_id": "74811", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -530213,7 +562415,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MAPK4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189906", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -530279,7 +562480,6 @@ "plasmid_name": "pCWX-R4DESTR2-PGK-BSD", "sequence-type": "addgene-full", "addgene_id": "114320", - "references": [], "kit": null, "att_sites": [ "attR2", @@ -530336,7 +562536,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP15", "sequence-type": "addgene-full", "addgene_id": "154413", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -530366,7 +562569,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-124", "sequence-type": "depositor-full", "addgene_id": "46659", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -530416,7 +562622,10 @@ "plasmid_name": "pFRT_TO_FlagHA_TIA1", "sequence-type": "addgene-full", "addgene_id": "106093", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "att_sites": [ "attB1", @@ -530461,7 +562670,10 @@ "plasmid_name": "MAC3_C_CCDC22(Y557C)", "sequence-type": "addgene-full", "addgene_id": "209695", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -530505,7 +562717,10 @@ "plasmid_name": "pLenti CMV Puro dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134728", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "att_sites": [ "attB1", @@ -530567,7 +562782,10 @@ "plasmid_name": "pDONR221-W279A-short-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192096", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "att_sites": [ "attB1", @@ -530598,7 +562816,6 @@ "plasmid_name": "pAM-35s-PBL27-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102388", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -530631,7 +562848,6 @@ "plasmid_name": "pDEST-Spe4-RfA", "sequence-type": "addgene-full", "addgene_id": "186375", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -530674,7 +562890,10 @@ "plasmid_name": "EHD2-T72A-mCherry", "sequence-type": "depositor-full", "addgene_id": "45935", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2012.98", + "https://www.ncbi.nlm.nih.gov/pubmed/22505029" + ], "kit": null, "att_sites": [ "attB1", @@ -530715,7 +562934,10 @@ "plasmid_name": "PDF1::mCitrine-MBD", "sequence-type": "addgene-full", "addgene_id": "115222", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.162255", + "https://www.ncbi.nlm.nih.gov/pubmed/29739839" + ], "kit": null, "att_sites": [ "attB1", @@ -530770,7 +562992,9 @@ "plasmid_name": "pMpGWB202", "sequence-type": "depositor-full", "addgene_id": "68593", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -530817,7 +563041,10 @@ "plasmid_name": "pDONR223_PIK3R3_p.M295T", "sequence-type": "addgene-full", "addgene_id": "82776", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -530846,7 +563073,10 @@ "plasmid_name": "pDONR223_RHOA_p.F106L", "sequence-type": "addgene-full", "addgene_id": "81286", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -530879,7 +563109,6 @@ "plasmid_name": "pAG416GAL10-ccdB-6stop", "sequence-type": "addgene-full", "addgene_id": "203512", - "references": [], "kit": null, "att_sites": [ "attR1" @@ -530933,7 +563162,10 @@ "plasmid_name": "pDONR221 Drs1", "sequence-type": "depositor-full", "addgene_id": "63744", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "att_sites": [ "attL1", @@ -530964,7 +563196,9 @@ "plasmid_name": "p3E-GFP-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82589", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "att_sites": [ "attL3", @@ -531000,7 +563234,10 @@ "plasmid_name": "1a72", "sequence-type": "addgene-full", "addgene_id": "177690", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "att_sites": [ "attB1", @@ -531050,7 +563287,10 @@ "plasmid_name": "pHAGE-MAPK1-E322K", "sequence-type": "addgene-full", "addgene_id": "116432", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -531102,7 +563342,10 @@ "plasmid_name": "pLEX307-mFzd3", "sequence-type": "addgene-full", "addgene_id": "102865", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "att_sites": [ "attB1", @@ -531159,7 +563402,10 @@ "plasmid_name": "MAC-CLEC4E", "sequence-type": "addgene-full", "addgene_id": "172412", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "att_sites": [ "attB1", @@ -531204,7 +563450,10 @@ "plasmid_name": "W118-1_hTGM2-Flag", "sequence-type": "addgene-full", "addgene_id": "180407", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180407.addgene-full.gb" }, @@ -531213,7 +563462,10 @@ "plasmid_name": "pDL109", "sequence-type": "addgene-full", "addgene_id": "175914", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -531237,7 +563489,10 @@ "plasmid_name": "MAC_N_ARP3B", "sequence-type": "addgene-full", "addgene_id": "111680", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "att_sites": [ "attB1", @@ -531282,7 +563537,6 @@ "plasmid_name": "pENTR_Hu_CCNB2(WT)", "sequence-type": "addgene-full", "addgene_id": "136341", - "references": [], "kit": null, "att_sites": [ "attL1", @@ -531313,7 +563567,10 @@ "plasmid_name": "pAB-EXPR(PYL-Nterm_dom_HDAC5)", "sequence-type": "addgene-full", "addgene_id": "114402", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114402.addgene-full.gb" }, @@ -531322,7 +563579,10 @@ "plasmid_name": "pCK051 p5E exorh:mCerulean", "sequence-type": "addgene-full", "addgene_id": "195952", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "att_sites": [ "attL4", @@ -531357,7 +563617,10 @@ "plasmid_name": "pDONR221_HUWE1_isoform1", "sequence-type": "addgene-full", "addgene_id": "190464", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "att_sites": [ "attL1", @@ -531381,7 +563644,10 @@ "plasmid_name": "pENTR221 UBR5 \u2206HECT", "sequence-type": "depositor-full", "addgene_id": "81065", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "att_sites": [ "attL1", @@ -531412,7 +563678,10 @@ "plasmid_name": "pHAGE-GUCY2C", "sequence-type": "addgene-full", "addgene_id": "116749", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -531466,7 +563735,6 @@ "plasmid_name": "pMx/ATP9B(E272Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209257", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -531501,7 +563769,10 @@ "plasmid_name": "pTW323", "sequence-type": "addgene-full", "addgene_id": "115954", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "att_sites": [ "attP1", @@ -531537,7 +563808,10 @@ "plasmid_name": "pDEST-APIC-Flp1", "sequence-type": "addgene-full", "addgene_id": "112806", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1707467114", + "https://www.ncbi.nlm.nih.gov/pubmed/28874572" + ], "kit": null, "att_sites": [ "attR1", @@ -531572,7 +563846,10 @@ "plasmid_name": "pLenti6/V5-DEST-NCAPH", "sequence-type": "depositor-full", "addgene_id": "31214", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccr.2011.05.025", + "https://www.ncbi.nlm.nih.gov/pubmed/21741599" + ], "kit": null, "att_sites": [ "attB1", @@ -531632,7 +563909,10 @@ "plasmid_name": "pDONR223_PDZD11_WT", "sequence-type": "addgene-full", "addgene_id": "82054", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -531664,7 +563944,10 @@ "plasmid_name": "pMuLE ENTR MCS L5-L4", "sequence-type": "addgene-full", "addgene_id": "62089", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL4", @@ -531695,7 +563978,10 @@ "plasmid_name": "pYPQ256", "sequence-type": "addgene-full", "addgene_id": "124312", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "att_sites": [ "attL1", @@ -531733,7 +564019,10 @@ "plasmid_name": "HJP-180-IVS-Syn21-gp41-1C-CreB-NrdJ-1N-WPREw", "sequence-type": "addgene-full", "addgene_id": "162471", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "att_sites": [ "attR1", @@ -531769,7 +564058,6 @@ "plasmid_name": "p663-UBC-V5-BRSK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135273", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -531834,7 +564122,6 @@ "plasmid_name": "R777-E292 Hs.RPS6KA2-nostop", "sequence-type": "depositor-full", "addgene_id": "70576", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -531862,7 +564149,10 @@ "plasmid_name": "pDONR221_SLC29A4", "sequence-type": "addgene-full", "addgene_id": "132115", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -531893,7 +564183,10 @@ "plasmid_name": "pDONR223 LC3B G120", "sequence-type": "addgene-full", "addgene_id": "123074", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attL1", @@ -531922,7 +564215,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0373-luc2", "sequence-type": "addgene-full", "addgene_id": "214617", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "att_sites": [ "attB1", @@ -531966,7 +564262,10 @@ "plasmid_name": "pT2-cryR;tmem88aCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90148", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "att_sites": [ "attB1", @@ -532014,7 +564313,10 @@ "plasmid_name": "pDONR223_RAF1_p.L613V", "sequence-type": "addgene-full", "addgene_id": "82180", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -532043,7 +564345,10 @@ "plasmid_name": "pAC1-pCR8-dCas9VP48", "sequence-type": "depositor-full", "addgene_id": "48214", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "att_sites": [ "attL1", @@ -532076,7 +564381,10 @@ "plasmid_name": "pGW-TurboID-GOI-GFP", "sequence-type": "addgene-full", "addgene_id": "209383", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "att_sites": [ "attR1", @@ -532128,7 +564436,10 @@ "plasmid_name": "YAP1-V5 in pLX304", "sequence-type": "addgene-full", "addgene_id": "42555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/23245941" + ], "kit": null, "att_sites": [ "attB1", @@ -532187,7 +564498,10 @@ "plasmid_name": "p8327 pLIX YAP1 S127A", "sequence-type": "addgene-full", "addgene_id": "184528", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "att_sites": [ "attB1", @@ -532242,7 +564556,10 @@ "plasmid_name": "pDONR223_RBM11_p.R74C", "sequence-type": "addgene-full", "addgene_id": "81352", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -532274,7 +564591,10 @@ "plasmid_name": "MAC_C_EPHA8", "sequence-type": "addgene-full", "addgene_id": "187761", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "att_sites": [ "attB1", @@ -532319,7 +564639,10 @@ "plasmid_name": "CHAF1B_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176969", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -532371,7 +564694,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TSSK1B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170616", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -532437,7 +564759,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP4", "sequence-type": "addgene-full", "addgene_id": "169379", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -532479,7 +564800,10 @@ "plasmid_name": "MAC_N_VSX1", "sequence-type": "addgene-full", "addgene_id": "167808", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -532524,7 +564848,10 @@ "plasmid_name": "pMH-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "133017", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2002193117", + "https://www.ncbi.nlm.nih.gov/pubmed/32611815" + ], "kit": null, "att_sites": [ "attR1", @@ -532573,7 +564900,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 CC1D", "sequence-type": "addgene-full", "addgene_id": "175774", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "att_sites": [ "attB1", @@ -532626,7 +564956,6 @@ "plasmid_name": "R777-E254 Hs.RASSF10-nostop", "sequence-type": "depositor-full", "addgene_id": "70538", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -532654,7 +564983,10 @@ "plasmid_name": "pcDNA5FRT/TO-PLAA-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113484", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "att_sites": [ "attB1", @@ -532698,7 +565030,10 @@ "plasmid_name": "pENTR221-WNT1", "sequence-type": "addgene-full", "addgene_id": "79499", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "att_sites": [ "attL2", @@ -532729,7 +565064,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-TAOK2", "sequence-type": "addgene-full", "addgene_id": "172992", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "att_sites": [ "attB1", @@ -532774,7 +565112,10 @@ "plasmid_name": "pHAGE-PIK3R1-W333R", "sequence-type": "addgene-full", "addgene_id": "116606", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -532825,7 +565166,10 @@ "plasmid_name": "pLenti-Paxillin EGFP", "sequence-type": "addgene-full", "addgene_id": "187688", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0069378", + "https://www.ncbi.nlm.nih.gov/pubmed/23990882" + ], "kit": null, "file": "data/addgene_plasmids/187688.addgene-full.gb" }, @@ -532834,7 +565178,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir17~20", "sequence-type": "depositor-full", "addgene_id": "46671", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "att_sites": [ "attB1", @@ -532884,7 +565231,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-LC3A-GFP", "sequence-type": "addgene-full", "addgene_id": "123106", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "att_sites": [ "attB1", @@ -532938,7 +565288,10 @@ "plasmid_name": "pZA4", "sequence-type": "addgene-full", "addgene_id": "158482", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "att_sites": [ "attL1", @@ -532967,7 +565320,10 @@ "plasmid_name": "RET_Y1062F-SHC", "sequence-type": "addgene-full", "addgene_id": "139620", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "att_sites": [ "attB1", @@ -533011,7 +565367,10 @@ "plasmid_name": "pDONR221_SLC2A12", "sequence-type": "addgene-full", "addgene_id": "132067", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -533042,7 +565401,10 @@ "plasmid_name": "pDL226", "sequence-type": "addgene-full", "addgene_id": "175929", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "att_sites": [ "attL1", @@ -533066,7 +565428,10 @@ "plasmid_name": "TFORF3538", "sequence-type": "depositor-full", "addgene_id": "145014", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -533126,7 +565491,10 @@ "plasmid_name": "R711-X12-566: His6-MBP-tev-Hs.NF1iso2 (1203-1530)", "sequence-type": "addgene-full", "addgene_id": "159580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.107909", + "https://www.ncbi.nlm.nih.gov/pubmed/32697994" + ], "kit": null, "att_sites": [ "attB1", @@ -533172,7 +565540,6 @@ "plasmid_name": "R777-E024 Hs.CDK4-nostop", "sequence-type": "depositor-full", "addgene_id": "70308", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -533200,7 +565567,6 @@ "plasmid_name": "Quas:GFPpA;Betacrystallin:CFP", "sequence-type": "depositor-full", "addgene_id": "81181", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -533244,7 +565610,10 @@ "plasmid_name": "pHAGE-PIK3CG", "sequence-type": "addgene-full", "addgene_id": "116774", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -533299,7 +565668,10 @@ "plasmid_name": "pENTR_hEMSY", "sequence-type": "addgene-full", "addgene_id": "125156", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-019-1210-7", + "https://www.ncbi.nlm.nih.gov/pubmed/31092928" + ], "kit": null, "att_sites": [ "attL1", @@ -533332,7 +565704,10 @@ "plasmid_name": "pSC34", "sequence-type": "addgene-full", "addgene_id": "104808", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "att_sites": [ "attB1", @@ -533375,7 +565750,10 @@ "plasmid_name": "pRATIO2112", "sequence-type": "addgene-full", "addgene_id": "141296", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "att_sites": [ "attR1", @@ -533428,7 +565806,6 @@ "plasmid_name": "R777-E208 Hs.RAC1-nostop", "sequence-type": "depositor-full", "addgene_id": "70492", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -533457,7 +565834,10 @@ "plasmid_name": "pAG425GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14321", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -533520,7 +565900,10 @@ "plasmid_name": "pHAGE-PIK3CA-G106V", "sequence-type": "addgene-full", "addgene_id": "116494", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -533574,7 +565957,10 @@ "plasmid_name": "pEF-ENTR-LacZ (710-1)", "sequence-type": "depositor-full", "addgene_id": "17430", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17430.depositor-full.gb" }, @@ -533583,7 +565969,10 @@ "plasmid_name": "pDONR221_SLC27A1", "sequence-type": "addgene-full", "addgene_id": "132128", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -533614,7 +566003,10 @@ "plasmid_name": "pCWX-R4-DEST-R2-PGR65", "sequence-type": "depositor-full", "addgene_id": "45953", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "file": "data/addgene_plasmids/45953.depositor-full.gb" }, @@ -533623,7 +566015,10 @@ "plasmid_name": "pDONR221-OSF-TRIM5-21R(1-300)", "sequence-type": "depositor-full", "addgene_id": "79029", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.16269", + "https://www.ncbi.nlm.nih.gov/pubmed/27253068" + ], "kit": null, "att_sites": [ "attL1", @@ -533658,7 +566053,10 @@ "plasmid_name": "pCFJ355 - MCS(ttTi14024, X)", "sequence-type": "depositor-full", "addgene_id": "34870", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "att_sites": [ "attB1", @@ -533691,7 +566089,10 @@ "plasmid_name": "pLX311 ARHGAP30", "sequence-type": "addgene-full", "addgene_id": "117739", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117739.addgene-full.gb" }, @@ -533700,7 +566101,10 @@ "plasmid_name": "LIIc F 2-3", "sequence-type": "depositor-full", "addgene_id": "54368", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "att_sites": [ "attR1", @@ -533732,7 +566136,10 @@ "plasmid_name": "pDONR221-SLC14A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161431", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -533763,7 +566170,10 @@ "plasmid_name": "pENTR_L1-YFP-miniTurbo-L2", "sequence-type": "addgene-full", "addgene_id": "127352", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "att_sites": [ "attL1", @@ -533799,7 +566209,6 @@ "plasmid_name": "R777-E337 Hs.STK3", "sequence-type": "depositor-full", "addgene_id": "70621", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -533828,7 +566237,10 @@ "plasmid_name": "pMDJ13 - pEXP[Peft-3 | tagRFP-T (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159800", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "att_sites": [ "attB1", @@ -533865,7 +566277,10 @@ "plasmid_name": "PB-Gata2", "sequence-type": "depositor-full", "addgene_id": "60665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "att_sites": [ "attB1", @@ -533905,7 +566320,10 @@ "plasmid_name": "pAG414GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14192", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -533966,7 +566384,10 @@ "plasmid_name": "pENTR1a-jAspSnFR3", "sequence-type": "addgene-full", "addgene_id": "203460", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "att_sites": [ "attL1", @@ -533992,7 +566413,10 @@ "plasmid_name": "plx304-PHB-V5", "sequence-type": "addgene-full", "addgene_id": "122230", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.127098", + "https://www.ncbi.nlm.nih.gov/pubmed/31391345" + ], "kit": null, "att_sites": [ "attB1", @@ -534051,7 +566475,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NN_G1333-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171729", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "att_sites": [ "attL1", @@ -534087,7 +566514,10 @@ "plasmid_name": "pHAGE-PIK3CA-R93W", "sequence-type": "addgene-full", "addgene_id": "116540", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -534141,7 +566571,6 @@ "plasmid_name": "R777-E062 Hs.ERBB2-nostop", "sequence-type": "depositor-full", "addgene_id": "70346", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -534169,7 +566598,10 @@ "plasmid_name": "pDONR221_OCA2", "sequence-type": "addgene-full", "addgene_id": "132253", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -534200,7 +566632,10 @@ "plasmid_name": "pYPQ141A", "sequence-type": "depositor-full", "addgene_id": "69290", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "att_sites": [ "attL2", @@ -534231,7 +566666,10 @@ "plasmid_name": "APP_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176954", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "att_sites": [ "attB1", @@ -534285,7 +566723,10 @@ "plasmid_name": "pDONR223_GSK3B_WT", "sequence-type": "addgene-full", "addgene_id": "82126", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "att_sites": [ "attL1", @@ -534315,7 +566756,10 @@ "plasmid_name": "MAC_N_NFAC3", "sequence-type": "addgene-full", "addgene_id": "167781", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "att_sites": [ "attB1", @@ -534360,7 +566804,10 @@ "plasmid_name": "pInducer 21-3xFlag-hMEFV-S580X", "sequence-type": "addgene-full", "addgene_id": "195474", - "references": [], + "references": [ + "https://doi.org/10.1038/s41419-023-05745-9", + "https://www.ncbi.nlm.nih.gov/pubmed/36966139" + ], "kit": null, "att_sites": [ "attB1", @@ -534417,7 +566864,10 @@ "plasmid_name": "pHAGE-eGFP-NDP52", "sequence-type": "addgene-full", "addgene_id": "175749", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2015.08.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26365381" + ], "kit": null, "att_sites": [ "attB1", @@ -534470,7 +566920,10 @@ "plasmid_name": "pENTR223-BDLF1", "sequence-type": "addgene-full", "addgene_id": "195794", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -534499,7 +566952,10 @@ "plasmid_name": "C514-E15: attB5r-RU5u-His6-MBP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162957", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -534532,7 +566988,10 @@ "plasmid_name": "pGWB543", "sequence-type": "depositor-full", "addgene_id": "74877", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "att_sites": [ "attR1", @@ -534581,7 +567040,10 @@ "plasmid_name": "GFP-STAM1", "sequence-type": "addgene-full", "addgene_id": "164628", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "att_sites": [ "attB1", @@ -534633,7 +567095,10 @@ "plasmid_name": "pENTR223-BRRF2", "sequence-type": "addgene-full", "addgene_id": "195820", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "att_sites": [ "attL1", @@ -534662,7 +567127,10 @@ "plasmid_name": "pENTR-L3-Cas9n-L2", "sequence-type": "addgene-full", "addgene_id": "141039", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "att_sites": [ "attL2", @@ -534690,7 +567158,6 @@ "plasmid_name": "pLIX403-EBFP2-ccdB-G418", "sequence-type": "addgene-full", "addgene_id": "158556", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -534752,7 +567219,10 @@ "plasmid_name": "TFORF3015", "sequence-type": "addgene-full", "addgene_id": "144491", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -534812,7 +567282,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP12_stop", "sequence-type": "addgene-full", "addgene_id": "168717", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -534841,7 +567314,10 @@ "plasmid_name": "pDONR221-SLC2A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161280", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -534872,7 +567348,10 @@ "plasmid_name": "5'-3xFLAG Gatad2a+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212050", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "att_sites": [ "attB1", @@ -534912,7 +567391,10 @@ "plasmid_name": "mCherry pBSDONR P4r-P2", "sequence-type": "addgene-full", "addgene_id": "121528", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.110.171785", + "https://www.ncbi.nlm.nih.gov/pubmed/21343429" + ], "kit": null, "att_sites": [ "attL2", @@ -534955,7 +567437,10 @@ "plasmid_name": "pDONR223_DNMT3A_p.G746V", "sequence-type": "addgene-full", "addgene_id": "81545", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -534988,7 +567473,10 @@ "plasmid_name": "pDONR221-SLC25A40_STOP", "sequence-type": "addgene-full", "addgene_id": "161160", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -535019,7 +567507,10 @@ "plasmid_name": "TFORF3295", "sequence-type": "addgene-full", "addgene_id": "144771", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -535079,7 +567570,10 @@ "plasmid_name": "actc1b-mKate2-rab7a", "sequence-type": "addgene-full", "addgene_id": "109655", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -535121,7 +567615,10 @@ "plasmid_name": "pDONR221_SLC26A10", "sequence-type": "addgene-full", "addgene_id": "131984", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -535152,7 +567649,10 @@ "plasmid_name": "pDEST-N2H-N2", "sequence-type": "addgene-full", "addgene_id": "125548", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11809-2", + "https://www.ncbi.nlm.nih.gov/pubmed/31467278" + ], "kit": null, "att_sites": [ "attR1", @@ -535200,7 +567700,10 @@ "plasmid_name": "pDONR223_TPK1_p.P152T", "sequence-type": "addgene-full", "addgene_id": "82797", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -535229,7 +567732,10 @@ "plasmid_name": "pDONR223_BRAF_p.A762E", "sequence-type": "addgene-full", "addgene_id": "82823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -535259,7 +567765,10 @@ "plasmid_name": "pME-Gal4", "sequence-type": "depositor-full", "addgene_id": "53366", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.22734", + "https://www.ncbi.nlm.nih.gov/pubmed/21905164" + ], "kit": null, "att_sites": [ "attL1", @@ -535291,7 +567800,10 @@ "plasmid_name": "pDONR221-kcnj6", "sequence-type": "addgene-full", "addgene_id": "173133", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "att_sites": [ "attL1", @@ -535322,7 +567834,10 @@ "plasmid_name": "MATN2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98351", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98351.addgene-full.gb" }, @@ -535331,7 +567846,6 @@ "plasmid_name": "pDest-565", "sequence-type": "addgene-full", "addgene_id": "11520", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -535379,7 +567893,10 @@ "plasmid_name": "pLenti_EF1a_EV", "sequence-type": "addgene-full", "addgene_id": "183116", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "att_sites": [ "attB1", @@ -535437,7 +567954,6 @@ "plasmid_name": "UBI10:RFP-RabG3B-WT", "sequence-type": "addgene-full", "addgene_id": "102369", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -535477,7 +567993,10 @@ "plasmid_name": "MAC_N_COMMD1", "sequence-type": "addgene-full", "addgene_id": "209674", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "att_sites": [ "attB1", @@ -535522,7 +568041,6 @@ "plasmid_name": "pLenti-PGK-CXCR4 (neo)", "sequence-type": "addgene-full", "addgene_id": "192077", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -535583,7 +568101,6 @@ "plasmid_name": "pDEST-Spe4-RfA-mVenus-stop", "sequence-type": "addgene-full", "addgene_id": "186394", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -535631,7 +568148,10 @@ "plasmid_name": "pNL(CMV)GLuc/CMV/WPREdU3", "sequence-type": "addgene-full", "addgene_id": "136999", - "references": [], + "references": [ + "https://doi.org/10.1089/hgtb.2012.054", + "https://www.ncbi.nlm.nih.gov/pubmed/22612657" + ], "kit": null, "att_sites": [ "attB1", @@ -535676,7 +568196,10 @@ "plasmid_name": "LA301: pMVP (L3-L2) P2A-Hygro + WPRE", "sequence-type": "addgene-full", "addgene_id": "121787", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL2", @@ -535713,7 +568236,10 @@ "plasmid_name": "KO101: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS-Dnmt3a3L", "sequence-type": "addgene-full", "addgene_id": "121833", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attR3", @@ -535748,7 +568274,6 @@ "plasmid_name": "p41Neo 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58554", - "references": [], "kit": null, "att_sites": [ "attR3", @@ -535804,7 +568329,10 @@ "plasmid_name": "pME-p3E-GLRX-roGFP2", "sequence-type": "addgene-full", "addgene_id": "194288", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "att_sites": [ "attL1", @@ -535836,7 +568364,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP10_nostop", "sequence-type": "addgene-full", "addgene_id": "168658", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -535865,7 +568396,10 @@ "plasmid_name": "pYPQ144-ZmUbi-pT", "sequence-type": "addgene-full", "addgene_id": "138108", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "att_sites": [ "attL2", @@ -535897,7 +568431,9 @@ "plasmid_name": "pPB-cT3G-cERP2-TET3", "sequence-type": "addgene-full", "addgene_id": "222574", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -535944,7 +568480,10 @@ "plasmid_name": "pDONR221-SLCO1B1_STOP", "sequence-type": "addgene-full", "addgene_id": "161354", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -535975,7 +568514,9 @@ "plasmid_name": "pME-rox-nls-mCherry-V5-2xStop-rox (JDW 1167)", "sequence-type": "addgene-full", "addgene_id": "224524", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "att_sites": [ "attL1", @@ -536011,7 +568552,10 @@ "plasmid_name": "MultiMate-HITI-2c ACTB", "sequence-type": "addgene-full", "addgene_id": "206267", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "att_sites": [ "attB1", @@ -536067,7 +568611,10 @@ "plasmid_name": "pDONR223_RBM10_WT", "sequence-type": "addgene-full", "addgene_id": "81771", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -536101,7 +568648,10 @@ "plasmid_name": "pENTR D-TOPO-C3_37", "sequence-type": "depositor-full", "addgene_id": "60278", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60278.depositor-full.gb" }, @@ -536110,7 +568660,10 @@ "plasmid_name": "TFORF3069", "sequence-type": "addgene-full", "addgene_id": "144545", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -536170,7 +568723,9 @@ "plasmid_name": "pDONR221-SCARB2(v1)", "sequence-type": "addgene-full", "addgene_id": "166206", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166206.addgene-full.gb" }, @@ -536179,7 +568734,10 @@ "plasmid_name": "pHAGE-DDR2-R473H", "sequence-type": "addgene-full", "addgene_id": "116225", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -536234,7 +568792,10 @@ "plasmid_name": "TFORF3435", "sequence-type": "addgene-full", "addgene_id": "144911", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -536295,7 +568856,9 @@ "plasmid_name": "pMpGWB407", "sequence-type": "depositor-full", "addgene_id": "68672", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "att_sites": [ "attR1", @@ -536348,7 +568911,10 @@ "plasmid_name": "pDONR223_EYS_p.C554S", "sequence-type": "addgene-full", "addgene_id": "81491", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -536380,7 +568946,10 @@ "plasmid_name": "pAG414GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14215", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -536442,7 +569011,10 @@ "plasmid_name": "pENTR-3xFLAG-YAP1-S127A", "sequence-type": "depositor-full", "addgene_id": "42239", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1116136109", + "https://www.ncbi.nlm.nih.gov/pubmed/22308401" + ], "kit": null, "att_sites": [ "attL1", @@ -536467,7 +569039,10 @@ "plasmid_name": "pDONR223_PTEN_p.K6N", "sequence-type": "addgene-full", "addgene_id": "81698", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -536499,7 +569074,10 @@ "plasmid_name": "pCM3.09", "sequence-type": "depositor-full", "addgene_id": "19406", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "att_sites": [ "attL1", @@ -536522,7 +569100,10 @@ "plasmid_name": "pDONR223_DCAF8_WT", "sequence-type": "addgene-full", "addgene_id": "82885", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -536551,7 +569132,10 @@ "plasmid_name": "pENTR4-EGFP_opt", "sequence-type": "addgene-full", "addgene_id": "106334", - "references": [], + "references": [ + "https://doi.org/10.1038/nature21690", + "https://www.ncbi.nlm.nih.gov/pubmed/28297718" + ], "kit": null, "att_sites": [ "attL1", @@ -536586,7 +569170,10 @@ "plasmid_name": "pDONR223_STAG2_p.R541K", "sequence-type": "addgene-full", "addgene_id": "81578", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -536618,7 +569205,10 @@ "plasmid_name": "p3E-rab14", "sequence-type": "addgene-full", "addgene_id": "109668", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attL3", @@ -536649,7 +569239,10 @@ "plasmid_name": "p5E-elavl3", "sequence-type": "depositor-full", "addgene_id": "75025", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -536685,7 +569278,10 @@ "plasmid_name": "pSLIK NPIPB11-FLAG zeo", "sequence-type": "addgene-full", "addgene_id": "192331", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "att_sites": [ "attB1", @@ -536750,7 +569346,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 S 24nt-del", "sequence-type": "addgene-full", "addgene_id": "153952", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "att_sites": [ "attL1", @@ -536779,7 +569378,10 @@ "plasmid_name": "pLKO.DEST.puro", "sequence-type": "depositor-full", "addgene_id": "32682", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "att_sites": [ "attR1", @@ -536840,7 +569442,10 @@ "plasmid_name": "pLenti CMV TRE3G Neo GFP-Lamin A wildtype", "sequence-type": "addgene-full", "addgene_id": "118709", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.08.024", + "https://www.ncbi.nlm.nih.gov/pubmed/26341717" + ], "kit": null, "att_sites": [ "attB1", @@ -536906,7 +569511,6 @@ "plasmid_name": "pHAGE mCherry-Rab11A Q70L", "sequence-type": "addgene-full", "addgene_id": "228038", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -536958,7 +569562,10 @@ "plasmid_name": "SERPINH1", "sequence-type": "addgene-full", "addgene_id": "155999", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -537001,7 +569608,10 @@ "plasmid_name": "pLD-puro-Cc-PARK7H126A-VA", "sequence-type": "addgene-full", "addgene_id": "115185", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "att_sites": [ "attB1", @@ -537063,7 +569673,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-C-mECFP", "sequence-type": "addgene-full", "addgene_id": "223950", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -537114,7 +569723,10 @@ "plasmid_name": "pExp_CAG:EYFP", "sequence-type": "depositor-full", "addgene_id": "51791", - "references": [], + "references": [ + "https://doi.org/10.1021/sb500263b", + "https://www.ncbi.nlm.nih.gov/pubmed/25369267" + ], "kit": null, "att_sites": [ "attB1", @@ -537164,7 +569776,10 @@ "plasmid_name": "pDONR221_SLC15A5", "sequence-type": "addgene-full", "addgene_id": "131922", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "att_sites": [ "attL1", @@ -537195,7 +569810,6 @@ "plasmid_name": "pLenti6.3/NS5", "sequence-type": "addgene-full", "addgene_id": "120843", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -537255,7 +569869,10 @@ "plasmid_name": "TFORF3387", "sequence-type": "addgene-full", "addgene_id": "144863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -537316,7 +569933,10 @@ "plasmid_name": "pDONR223-ZNF576", "sequence-type": "addgene-full", "addgene_id": "88074", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "att_sites": [ "attL1", @@ -537345,7 +569965,6 @@ "plasmid_name": "R777-E112 Hs.IRS2-nostop", "sequence-type": "depositor-full", "addgene_id": "70396", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -537373,7 +569992,10 @@ "plasmid_name": "pHAGE-ERBB2-V777_G778insGSP", "sequence-type": "addgene-full", "addgene_id": "116357", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -537427,7 +570049,10 @@ "plasmid_name": "pcDNA3_SP-DRD1-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194361", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "att_sites": [ "attB1", @@ -537484,7 +570109,10 @@ "plasmid_name": "RBM41", "sequence-type": "addgene-full", "addgene_id": "155902", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "att_sites": [ "attB1", @@ -537527,7 +570155,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep70", "sequence-type": "addgene-full", "addgene_id": "136870", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "att_sites": [ "attB1", @@ -537572,7 +570203,10 @@ "plasmid_name": "366 pTol2-CherryDest", "sequence-type": "depositor-full", "addgene_id": "73487", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "att_sites": [ "attR1", @@ -537624,7 +570258,10 @@ "plasmid_name": "pDONR223_CD70_p.D165Y", "sequence-type": "addgene-full", "addgene_id": "81603", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -537656,7 +570293,10 @@ "plasmid_name": "actc1b-mKate2-EHD1a-dEH", "sequence-type": "addgene-full", "addgene_id": "109513", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB1", @@ -537698,7 +570338,10 @@ "plasmid_name": "TFORF2961", "sequence-type": "addgene-full", "addgene_id": "144437", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -537758,7 +570401,10 @@ "plasmid_name": "pIE2-AD", "sequence-type": "depositor-full", "addgene_id": "21603", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ab.2009.05.033", + "https://www.ncbi.nlm.nih.gov/pubmed/19481053" + ], "kit": null, "file": "data/addgene_plasmids/21603.depositor-full.gb" }, @@ -537767,7 +570413,10 @@ "plasmid_name": "pAG416-Gal-PR50", "sequence-type": "addgene-full", "addgene_id": "84901", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "att_sites": [ "attB1", @@ -537822,7 +570471,10 @@ "plasmid_name": "pDONR223_SMAD4_p.R97H", "sequence-type": "addgene-full", "addgene_id": "81437", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -537854,7 +570506,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-Membrane", "sequence-type": "depositor-full", "addgene_id": "168905", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -537883,7 +570538,10 @@ "plasmid_name": "pAC1813_pCR8-gSMN2-DN1", "sequence-type": "addgene-full", "addgene_id": "118646", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "att_sites": [ "attL1", @@ -537916,7 +570574,10 @@ "plasmid_name": "p3E-rab9a", "sequence-type": "addgene-full", "addgene_id": "109727", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "att_sites": [ "attB2", @@ -537947,7 +570608,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 N_nostop", "sequence-type": "addgene-full", "addgene_id": "168585", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "att_sites": [ "attL1", @@ -537976,7 +570640,10 @@ "plasmid_name": "TFORF3127", "sequence-type": "addgene-full", "addgene_id": "144603", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -538036,7 +570703,9 @@ "plasmid_name": "pAG416GAL-EGFP", "sequence-type": "addgene-full", "addgene_id": "166140", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "att_sites": [ "attB1", @@ -538093,7 +570762,10 @@ "plasmid_name": "pHAGE-EGFR-P589L", "sequence-type": "addgene-full", "addgene_id": "116283", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -538147,7 +570819,10 @@ "plasmid_name": "pHAGE-BRAF-H269Y", "sequence-type": "addgene-full", "addgene_id": "116163", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -538202,7 +570877,6 @@ "plasmid_name": "pVP16-tev-PRT1-C29A", "sequence-type": "addgene-full", "addgene_id": "83407", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -538240,7 +570914,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-WEE2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189895", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -538306,7 +570979,9 @@ "plasmid_name": "pPB-cT3G-cERP2-ANHX", "sequence-type": "addgene-full", "addgene_id": "222549", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "att_sites": [ "attB1", @@ -538352,7 +571027,6 @@ "plasmid_name": "pWALIUM10-V5-TurboID-GW", "sequence-type": "addgene-full", "addgene_id": "196285", - "references": [], "kit": null, "att_sites": [ "attR1", @@ -538408,7 +571082,10 @@ "plasmid_name": "pEZYeGFP-SARS-CoV-2E GGG", "sequence-type": "addgene-full", "addgene_id": "224582", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms241612793", + "https://www.ncbi.nlm.nih.gov/pubmed/37628973" + ], "kit": null, "att_sites": [ "attB1", @@ -538450,7 +571127,10 @@ "plasmid_name": "pDONR223_FAM116A_WT", "sequence-type": "addgene-full", "addgene_id": "81863", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -538482,7 +571162,10 @@ "plasmid_name": "pENTR{KDRT-RC}", "sequence-type": "addgene-full", "addgene_id": "182166", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "att_sites": [ "attL1", @@ -538513,7 +571196,10 @@ "plasmid_name": "p7140 pHAGE-P-CMVt-N-HA-GAW-EME1", "sequence-type": "addgene-full", "addgene_id": "100150", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "att_sites": [ "attB1", @@ -538565,7 +571251,10 @@ "plasmid_name": "pFRT_TO_eGFP_CELF1", "sequence-type": "addgene-full", "addgene_id": "106100", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "att_sites": [ "attB1", @@ -538612,7 +571301,10 @@ "plasmid_name": "slc1a3b:myrGFP-P2A-H2AmCherry", "sequence-type": "addgene-full", "addgene_id": "170208", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-020-0703-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32895565" + ], "kit": null, "file": "data/addgene_plasmids/170208.addgene-full.gb" }, @@ -538621,7 +571313,10 @@ "plasmid_name": "pLenti4/V5-DEST-LASSIE", "sequence-type": "addgene-full", "addgene_id": "192105", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-020-0987-0", + "https://www.ncbi.nlm.nih.gov/pubmed/32457386" + ], "kit": null, "att_sites": [ "attB1", @@ -538677,7 +571372,10 @@ "plasmid_name": "SHP2(WT)@pLKO-Trex-SBP", "sequence-type": "addgene-full", "addgene_id": "85457", - "references": [], + "references": [ + "https://doi.org/10.1038/nature18621", + "https://www.ncbi.nlm.nih.gov/pubmed/27362227" + ], "kit": null, "att_sites": [ "attB1", @@ -538744,7 +571442,10 @@ "plasmid_name": "TFORF3102", "sequence-type": "addgene-full", "addgene_id": "144578", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -538804,7 +571505,10 @@ "plasmid_name": "pLenti6.2_3xFLAG_V5_ mmIfih1_V5", "sequence-type": "addgene-full", "addgene_id": "160110", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "att_sites": [ "attB1", @@ -538863,7 +571567,10 @@ "plasmid_name": "TFORF3222", "sequence-type": "addgene-full", "addgene_id": "144698", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "att_sites": [ "attB1", @@ -538923,7 +571630,6 @@ "plasmid_name": "R777-E158 Hs.PDGFRB-nostop", "sequence-type": "depositor-full", "addgene_id": "70442", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -538952,7 +571658,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK19_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158175", - "references": [], "kit": null, "att_sites": [ "attB1", @@ -539018,7 +571723,10 @@ "plasmid_name": "pHAGE-CDK6-V181I", "sequence-type": "addgene-full", "addgene_id": "116218", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "att_sites": [ "attB1", @@ -539068,7 +571776,10 @@ "plasmid_name": "pMuLE ENTR U6-miR-30 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62115", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "att_sites": [ "attL2", @@ -539104,7 +571815,10 @@ "plasmid_name": "plenti-UbcP-HA-YWAA-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107379", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "att_sites": [ "attB1", @@ -539162,7 +571876,10 @@ "plasmid_name": "pBi2FC-N-MGGAGM-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216142", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "att_sites": [ "attB1", @@ -539212,7 +571929,10 @@ "plasmid_name": "pDONR223_PPOX_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82951", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "att_sites": [ "attL1", @@ -539241,7 +571961,10 @@ "plasmid_name": "II801: pMVP (L5-L4) ecDHFR DD", "sequence-type": "addgene-full", "addgene_id": "121721", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "att_sites": [ "attL4", diff --git a/results/plasmid_summary.json b/results/plasmid_summary.json index a62cd47..68c0135 100644 --- a/results/plasmid_summary.json +++ b/results/plasmid_summary.json @@ -469,7 +469,10 @@ "plasmid_name": "pDONR223_C1orf150_p.G2E", "sequence-type": "addgene-full", "addgene_id": "81309", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -481,7 +484,10 @@ "plasmid_name": "pDest-313 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161898", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -493,7 +499,10 @@ "plasmid_name": "pDONR223_MAP2K3_WT", "sequence-type": "addgene-full", "addgene_id": "82140", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82140.addgene-full.gb" }, @@ -502,7 +511,6 @@ "plasmid_name": "Hs.HRAS Q61L", "sequence-type": "depositor-full", "addgene_id": "83186", - "references": [], "kit": null, "file": "data/addgene_plasmids/83186.depositor-full.gb" }, @@ -511,7 +519,10 @@ "plasmid_name": "pDONR221_SLC9B2", "sequence-type": "addgene-full", "addgene_id": "132235", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132235.addgene-full.gb" }, @@ -520,7 +531,10 @@ "plasmid_name": "pLenti CMV TRE3G Puro FLAG-DD-ER-mCherry-TRF1-FokI WT", "sequence-type": "addgene-full", "addgene_id": "207832", - "references": [], + "references": [ + "https://doi.org/10.1038/nature20099", + "https://www.ncbi.nlm.nih.gov/pubmed/27760120" + ], "kit": null, "file": "data/addgene_plasmids/207832.addgene-full.gb" }, @@ -529,7 +543,10 @@ "plasmid_name": "pJRA110", "sequence-type": "addgene-full", "addgene_id": "209343", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209343.addgene-full.gb" }, @@ -538,7 +555,10 @@ "plasmid_name": "pDONR221-GATA4", "sequence-type": "addgene-full", "addgene_id": "101417", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101417.addgene-full.gb" }, @@ -547,7 +567,10 @@ "plasmid_name": "pPB-cT3G-cERP2-FOXL2", "sequence-type": "addgene-full", "addgene_id": "192914", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192914.addgene-full.gb" }, @@ -556,7 +579,10 @@ "plasmid_name": "pMXs-Pou4f3", "sequence-type": "addgene-full", "addgene_id": "158530", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.55249", + "https://www.ncbi.nlm.nih.gov/pubmed/32602462" + ], "kit": null, "file": "data/addgene_plasmids/158530.addgene-full.gb" }, @@ -565,7 +591,10 @@ "plasmid_name": "plenti-CAG-IKZF3-Q147H-FLAG-IRES-GFP", "sequence-type": "depositor-full", "addgene_id": "69050", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/69050.depositor-full.gb" }, @@ -574,7 +603,10 @@ "plasmid_name": "pCM5.65", "sequence-type": "depositor-full", "addgene_id": "19371", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19371.depositor-full.gb" }, @@ -583,7 +615,10 @@ "plasmid_name": "LIIalpha R 5-6", "sequence-type": "depositor-full", "addgene_id": "54355", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54355.depositor-full.gb" }, @@ -592,7 +627,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS2B", "sequence-type": "addgene-full", "addgene_id": "145344", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145344.addgene-full.gb" }, @@ -601,7 +639,10 @@ "plasmid_name": "C415-E01: attB4-stuffer-attB1r", "sequence-type": "addgene-full", "addgene_id": "162931", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -613,7 +654,10 @@ "plasmid_name": "pDONR221-RHBG_STOP", "sequence-type": "depositor-full", "addgene_id": "161049", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161049.depositor-full.gb" }, @@ -622,7 +666,10 @@ "plasmid_name": "pDONR221-NIPAL3_STOP", "sequence-type": "addgene-full", "addgene_id": "161457", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161457.addgene-full.gb" }, @@ -631,7 +678,10 @@ "plasmid_name": "pDONR221-kcnt1a", "sequence-type": "addgene-full", "addgene_id": "164961", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.329", + "https://www.ncbi.nlm.nih.gov/pubmed/33728688" + ], "kit": null, "file": "data/addgene_plasmids/164961.addgene-full.gb" }, @@ -640,7 +690,10 @@ "plasmid_name": "pAG304GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14352", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -652,7 +705,10 @@ "plasmid_name": "pDONR201-Ctdnep1", "sequence-type": "addgene-full", "addgene_id": "196520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196520.addgene-full.gb" }, @@ -661,7 +717,10 @@ "plasmid_name": "pGC180", "sequence-type": "depositor-full", "addgene_id": "19616", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19616.depositor-full.gb" }, @@ -670,7 +729,10 @@ "plasmid_name": "pENTR223-BDLF3.5", "sequence-type": "addgene-full", "addgene_id": "195769", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195769.addgene-full.gb" }, @@ -679,7 +741,10 @@ "plasmid_name": "p5Ecldn5bE1", "sequence-type": "addgene-full", "addgene_id": "90113", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90113.addgene-full.gb" }, @@ -688,7 +753,10 @@ "plasmid_name": "pcDNA3.1 PA-mCit-NL", "sequence-type": "addgene-full", "addgene_id": "113444", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113444.addgene-full.gb" }, @@ -697,7 +765,10 @@ "plasmid_name": "pINDUCER-21-HOXA9", "sequence-type": "addgene-full", "addgene_id": "97041", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "file": "data/addgene_plasmids/97041.addgene-full.gb" }, @@ -706,7 +777,10 @@ "plasmid_name": "pENTR-Site2", "sequence-type": "depositor-full", "addgene_id": "24513", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0009846", + "https://www.ncbi.nlm.nih.gov/pubmed/20352097" + ], "kit": null, "file": "data/addgene_plasmids/24513.depositor-full.gb" }, @@ -715,7 +789,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(TM)-IRES-hyg", "sequence-type": "addgene-full", "addgene_id": "128668", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128668.addgene-full.gb" }, @@ -724,7 +801,10 @@ "plasmid_name": "pHAGE-PIK3CA-Q546E", "sequence-type": "addgene-full", "addgene_id": "116526", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116526.addgene-full.gb" }, @@ -733,7 +813,10 @@ "plasmid_name": "pENTR-TARDBP-A315T", "sequence-type": "addgene-full", "addgene_id": "141324", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "file": "data/addgene_plasmids/141324.addgene-full.gb" }, @@ -742,7 +825,10 @@ "plasmid_name": "pDONR223-NTRK2", "sequence-type": "addgene-full", "addgene_id": "23883", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -754,7 +840,10 @@ "plasmid_name": "pDONR223_CYLC2_p.V105F", "sequence-type": "addgene-full", "addgene_id": "81392", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -766,7 +855,10 @@ "plasmid_name": "pSGE_975_Nhe2_EcR-mut", "sequence-type": "depositor-full", "addgene_id": "71179", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71179.depositor-full.gb" }, @@ -775,7 +867,10 @@ "plasmid_name": "pCFJ2211 - [1-2] ENTR - Fluor - mMaple3(intron, PATC, no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159866", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159866.addgene-full.gb" }, @@ -784,7 +879,10 @@ "plasmid_name": "pENTR L1-5XQUAS-L4", "sequence-type": "depositor-full", "addgene_id": "32308", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32308.depositor-full.gb" }, @@ -793,7 +891,10 @@ "plasmid_name": "MSCV-N EBNA1", "sequence-type": "addgene-full", "addgene_id": "37954", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "file": "data/addgene_plasmids/37954.addgene-full.gb" }, @@ -802,7 +903,10 @@ "plasmid_name": "pDN0604 (pDEST, HygR)", "sequence-type": "addgene-full", "addgene_id": "210483", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210483.addgene-full.gb" }, @@ -811,7 +915,10 @@ "plasmid_name": "pR26 iBFP Dest", "sequence-type": "depositor-full", "addgene_id": "74284", - "references": [], + "references": [ + "https://doi.org/10.1186/s12896-016-0234-4", + "https://www.ncbi.nlm.nih.gov/pubmed/26772810" + ], "kit": null, "file": "data/addgene_plasmids/74284.depositor-full.gb" }, @@ -820,7 +927,10 @@ "plasmid_name": "pHAGE-ALK", "sequence-type": "addgene-full", "addgene_id": "116712", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116712.addgene-full.gb" }, @@ -829,7 +939,10 @@ "plasmid_name": "pLX307 P2A GFP PRDM14", "sequence-type": "addgene-full", "addgene_id": "193676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193676.addgene-full.gb" }, @@ -838,7 +951,10 @@ "plasmid_name": "pYPQ292 (AaCas12b)-D570A-TV-MS2-TV", "sequence-type": "addgene-full", "addgene_id": "136381", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136381.addgene-full.gb" }, @@ -847,7 +963,9 @@ "plasmid_name": "pMpGWB132", "sequence-type": "depositor-full", "addgene_id": "68586", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68586.depositor-full.gb" }, @@ -856,7 +974,6 @@ "plasmid_name": "pcDNA-SUN1 EGFP", "sequence-type": "addgene-full", "addgene_id": "187675", - "references": [], "kit": null, "file": "data/addgene_plasmids/187675.addgene-full.gb" }, @@ -865,7 +982,10 @@ "plasmid_name": "tetO-SNAI2", "sequence-type": "addgene-full", "addgene_id": "170702", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170702.addgene-full.gb" }, @@ -874,7 +994,10 @@ "plasmid_name": "pBABE-puro-Halo-hMRE11(DB1\u0394/DB2\u0394)", "sequence-type": "addgene-full", "addgene_id": "208395", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06889-6", + "https://www.ncbi.nlm.nih.gov/pubmed/38200309" + ], "kit": null, "file": "data/addgene_plasmids/208395.addgene-full.gb" }, @@ -883,7 +1006,6 @@ "plasmid_name": "IDG_KCNK7_OE_1", "sequence-type": "addgene-full", "addgene_id": "161663", - "references": [], "kit": null, "file": "data/addgene_plasmids/161663.addgene-full.gb" }, @@ -892,7 +1014,10 @@ "plasmid_name": "p5E-QUAS5x", "sequence-type": "addgene-full", "addgene_id": "155113", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155113.addgene-full.gb" }, @@ -901,7 +1026,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) EPB41L1", "sequence-type": "addgene-full", "addgene_id": "107508", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107508.addgene-full.gb" }, @@ -910,7 +1038,10 @@ "plasmid_name": "pCM3.23", "sequence-type": "depositor-full", "addgene_id": "21389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21389.depositor-full.gb" }, @@ -919,7 +1050,10 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ash-mCerulean", "sequence-type": "depositor-full", "addgene_id": "69579", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1311126110", + "https://www.ncbi.nlm.nih.gov/pubmed/24006363" + ], "kit": null, "file": "data/addgene_plasmids/69579.depositor-full.gb" }, @@ -928,7 +1062,6 @@ "plasmid_name": "pCDNA3.2/V5-DEST-Noa1", "sequence-type": "addgene-full", "addgene_id": "191969", - "references": [], "kit": null, "file": "data/addgene_plasmids/191969.addgene-full.gb" }, @@ -937,7 +1070,10 @@ "plasmid_name": "pHAGE-PIK3CA-E110delE", "sequence-type": "addgene-full", "addgene_id": "116469", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116469.addgene-full.gb" }, @@ -946,7 +1082,10 @@ "plasmid_name": "pMOS009: pLX304-QuasAr2", "sequence-type": "depositor-full", "addgene_id": "62985", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3000", + "https://www.ncbi.nlm.nih.gov/pubmed/24952910" + ], "kit": null, "file": "data/addgene_plasmids/62985.depositor-full.gb" }, @@ -955,7 +1094,10 @@ "plasmid_name": "pGWB410", "sequence-type": "depositor-full", "addgene_id": "74804", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74804.depositor-full.gb" }, @@ -964,7 +1106,10 @@ "plasmid_name": "pDONR223_AR_WT", "sequence-type": "addgene-full", "addgene_id": "82094", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -976,7 +1121,10 @@ "plasmid_name": "MAP2-GCaMP3", "sequence-type": "addgene-full", "addgene_id": "43917", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0028719", + "https://www.ncbi.nlm.nih.gov/pubmed/22174877" + ], "kit": null, "file": "data/addgene_plasmids/43917.addgene-full.gb" }, @@ -985,7 +1133,6 @@ "plasmid_name": "R777-E051 Hs.ECT2", "sequence-type": "depositor-full", "addgene_id": "70335", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -997,7 +1144,10 @@ "plasmid_name": "pCMB-GAr", "sequence-type": "depositor-full", "addgene_id": "61173", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61173.depositor-full.gb" }, @@ -1006,7 +1156,10 @@ "plasmid_name": "pDONR221_SLC22A9", "sequence-type": "addgene-full", "addgene_id": "132001", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132001.addgene-full.gb" }, @@ -1015,7 +1168,10 @@ "plasmid_name": "pHAGE-ROR1", "sequence-type": "addgene-full", "addgene_id": "116789", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116789.addgene-full.gb" }, @@ -1024,7 +1180,10 @@ "plasmid_name": "pCPP5616", "sequence-type": "addgene-full", "addgene_id": "128727", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128727.addgene-full.gb" }, @@ -1033,7 +1192,10 @@ "plasmid_name": "pENTR4-GFP-C3 (w393-1)", "sequence-type": "depositor-full", "addgene_id": "17397", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17397.depositor-full.gb" }, @@ -1042,7 +1204,10 @@ "plasmid_name": "pGWT35S-Citrine-PTS", "sequence-type": "addgene-full", "addgene_id": "182585", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "file": "data/addgene_plasmids/182585.addgene-full.gb" }, @@ -1051,7 +1216,10 @@ "plasmid_name": "Flag-HA-USP8", "sequence-type": "addgene-full", "addgene_id": "22608", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22608.addgene-full.gb" }, @@ -1060,7 +1228,10 @@ "plasmid_name": "pDONR223_PPP6C_p.E180K", "sequence-type": "addgene-full", "addgene_id": "81334", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -1072,7 +1243,10 @@ "plasmid_name": "pHAGE-PIK3CG-G436R", "sequence-type": "addgene-full", "addgene_id": "116580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116580.addgene-full.gb" }, @@ -1081,7 +1255,10 @@ "plasmid_name": "pDONR221_SLC6A7", "sequence-type": "addgene-full", "addgene_id": "132208", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132208.addgene-full.gb" }, @@ -1090,7 +1267,10 @@ "plasmid_name": "pHAGE-RAF1-S257L", "sequence-type": "addgene-full", "addgene_id": "116660", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116660.addgene-full.gb" }, @@ -1099,7 +1279,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp10", "sequence-type": "depositor-full", "addgene_id": "168842", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168842.depositor-full.gb" }, @@ -1108,7 +1291,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3A WT", "sequence-type": "addgene-full", "addgene_id": "123089", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123089.addgene-full.gb" }, @@ -1117,7 +1303,10 @@ "plasmid_name": "pENTR-R2-pA-L4", "sequence-type": "addgene-full", "addgene_id": "141062", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141062.addgene-full.gb" }, @@ -1126,7 +1315,10 @@ "plasmid_name": "pKI-cjFOXP2-hum", "sequence-type": "addgene-full", "addgene_id": "129757", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-018-37990-w", + "https://www.ncbi.nlm.nih.gov/pubmed/30728412" + ], "kit": null, "file": "data/addgene_plasmids/129757.addgene-full.gb" }, @@ -1135,7 +1327,10 @@ "plasmid_name": "CMV-dCasRx-ccdB", "sequence-type": "addgene-full", "addgene_id": "221003", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.028", + "https://www.ncbi.nlm.nih.gov/pubmed/38917795" + ], "kit": null, "file": "data/addgene_plasmids/221003.addgene-full.gb" }, @@ -1144,7 +1339,10 @@ "plasmid_name": "pAG416GPD-ccdB", "sequence-type": "addgene-full", "addgene_id": "14148", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -1156,7 +1354,6 @@ "plasmid_name": "p667-UBC-PRKCQ-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170590", - "references": [], "kit": null, "file": "data/addgene_plasmids/170590.addgene-full.gb" }, @@ -1165,7 +1362,10 @@ "plasmid_name": "pDONR223_EIF4EBP1_WT", "sequence-type": "addgene-full", "addgene_id": "82206", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82206.addgene-full.gb" }, @@ -1174,7 +1374,10 @@ "plasmid_name": "Flag-HA-USP20", "sequence-type": "addgene-full", "addgene_id": "22573", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22573.addgene-full.gb" }, @@ -1183,7 +1386,10 @@ "plasmid_name": "pENTR1A mKate2-hu_ncOGT D554N", "sequence-type": "addgene-full", "addgene_id": "154283", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154283.addgene-full.gb" }, @@ -1192,7 +1398,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(V306R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128655", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128655.addgene-full.gb" }, @@ -1201,7 +1410,6 @@ "plasmid_name": "R777-E221 Hs.RALGDS", "sequence-type": "depositor-full", "addgene_id": "70505", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -1213,7 +1421,10 @@ "plasmid_name": "pSBDEST.H", "sequence-type": "addgene-full", "addgene_id": "79464", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79464.addgene-full.gb" }, @@ -1222,7 +1433,10 @@ "plasmid_name": "pDONR221_SLC7A14", "sequence-type": "addgene-full", "addgene_id": "132173", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132173.addgene-full.gb" }, @@ -1231,7 +1445,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD7-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113479", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113479.addgene-full.gb" }, @@ -1240,7 +1457,10 @@ "plasmid_name": "pDONR221_SLCO3A1", "sequence-type": "addgene-full", "addgene_id": "132293", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132293.addgene-full.gb" }, @@ -1249,7 +1469,10 @@ "plasmid_name": "pCW57.1-3xFLAG-NLS-GFP", "sequence-type": "addgene-full", "addgene_id": "198238", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddad021", + "https://www.ncbi.nlm.nih.gov/pubmed/36728804" + ], "kit": null, "file": "data/addgene_plasmids/198238.addgene-full.gb" }, @@ -1258,7 +1481,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP10", "sequence-type": "addgene-full", "addgene_id": "169384", - "references": [], "kit": null, "file": "data/addgene_plasmids/169384.addgene-full.gb" }, @@ -1267,7 +1489,6 @@ "plasmid_name": "pDONR221-FURIN", "sequence-type": "addgene-full", "addgene_id": "158442", - "references": [], "kit": null, "file": "data/addgene_plasmids/158442.addgene-full.gb" }, @@ -1276,7 +1497,10 @@ "plasmid_name": "pDONR-IAA14", "sequence-type": "depositor-full", "addgene_id": "83851", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83851.depositor-full.gb" }, @@ -1285,7 +1509,10 @@ "plasmid_name": "UAS::PTPRFb-DN-GFP", "sequence-type": "depositor-full", "addgene_id": "37111", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.01.040", + "https://www.ncbi.nlm.nih.gov/pubmed/22326027" + ], "kit": null, "file": "data/addgene_plasmids/37111.depositor-full.gb" }, @@ -1294,7 +1521,10 @@ "plasmid_name": "pDEST mpeg1:tomato-CAAX", "sequence-type": "addgene-full", "addgene_id": "135215", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13967", + "https://www.ncbi.nlm.nih.gov/pubmed/25470057" + ], "kit": null, "file": "data/addgene_plasmids/135215.addgene-full.gb" }, @@ -1303,7 +1533,10 @@ "plasmid_name": "pDONR221 Tma16", "sequence-type": "depositor-full", "addgene_id": "63779", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63779.depositor-full.gb" }, @@ -1312,7 +1545,10 @@ "plasmid_name": "pTW084", "sequence-type": "addgene-full", "addgene_id": "115932", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115932.addgene-full.gb" }, @@ -1321,7 +1557,6 @@ "plasmid_name": "pMx/ATP9B-HA", "sequence-type": "addgene-full", "addgene_id": "209231", - "references": [], "kit": null, "file": "data/addgene_plasmids/209231.addgene-full.gb" }, @@ -1330,7 +1565,10 @@ "plasmid_name": "10xHis-MBP-TEV-S. pyogenes dCas9 M1C D10A C80S H840A C574S", "sequence-type": "depositor-full", "addgene_id": "60815", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13769", + "https://www.ncbi.nlm.nih.gov/pubmed/25274302" + ], "kit": null, "file": "data/addgene_plasmids/60815.depositor-full.gb" }, @@ -1339,7 +1577,6 @@ "plasmid_name": "pSMPUW_8.1_ M2_CAMKIIA-gateway-V5", "sequence-type": "addgene-full", "addgene_id": "128461", - "references": [], "kit": null, "file": "data/addgene_plasmids/128461.addgene-full.gb" }, @@ -1348,7 +1585,10 @@ "plasmid_name": "pDONR221 NLRP1", "sequence-type": "addgene-full", "addgene_id": "166823", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166823.addgene-full.gb" }, @@ -1357,7 +1597,10 @@ "plasmid_name": "pGGEV_3_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49298", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -1369,7 +1612,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP2", "sequence-type": "addgene-full", "addgene_id": "141256", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141256.addgene-full.gb" }, @@ -1378,7 +1624,10 @@ "plasmid_name": "HS-Ras-mKate2", "sequence-type": "addgene-full", "addgene_id": "105951", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25600237" + ], "kit": null, "file": "data/addgene_plasmids/105951.addgene-full.gb" }, @@ -1387,7 +1636,10 @@ "plasmid_name": "pLX304-BCL-XL-499R", "sequence-type": "addgene-full", "addgene_id": "203574", - "references": [], + "references": [ + "https://doi.org/10.1158/1078-0432.CCR-22-0669", + "https://www.ncbi.nlm.nih.gov/pubmed/35776130" + ], "kit": null, "file": "data/addgene_plasmids/203574.addgene-full.gb" }, @@ -1396,7 +1648,10 @@ "plasmid_name": "pYPQ291-D573A-SRDX", "sequence-type": "addgene-full", "addgene_id": "129683", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129683.addgene-full.gb" }, @@ -1405,7 +1660,10 @@ "plasmid_name": "R989-X08-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) G12C", "sequence-type": "addgene-full", "addgene_id": "159540", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159540.addgene-full.gb" }, @@ -1414,7 +1672,10 @@ "plasmid_name": "pENTR-Mm_MyoGEF(WT)", "sequence-type": "addgene-full", "addgene_id": "136327", - "references": [], + "references": [ + "https://doi.org/10.1038/nm.4364", + "https://www.ncbi.nlm.nih.gov/pubmed/28692064" + ], "kit": null, "file": "data/addgene_plasmids/136327.addgene-full.gb" }, @@ -1423,7 +1684,10 @@ "plasmid_name": "pYPQ158", "sequence-type": "depositor-full", "addgene_id": "69307", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69307.depositor-full.gb" }, @@ -1432,7 +1696,6 @@ "plasmid_name": "pTwist-ENTR-rbm11-203", "sequence-type": "addgene-full", "addgene_id": "192749", - "references": [], "kit": null, "file": "data/addgene_plasmids/192749.addgene-full.gb" }, @@ -1441,7 +1704,10 @@ "plasmid_name": "pHAGE-TGFBR2", "sequence-type": "addgene-full", "addgene_id": "116800", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116800.addgene-full.gb" }, @@ -1450,7 +1716,10 @@ "plasmid_name": "2Flag-pDEST-N", "sequence-type": "addgene-full", "addgene_id": "118371", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118371.addgene-full.gb" }, @@ -1459,7 +1728,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP14_nostop", "sequence-type": "addgene-full", "addgene_id": "168698", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168698.addgene-full.gb" }, @@ -1468,7 +1740,10 @@ "plasmid_name": "pDONR P2R-P3-ECFP", "sequence-type": "depositor-full", "addgene_id": "48353", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -1480,7 +1755,9 @@ "plasmid_name": "pMpGWB102", "sequence-type": "depositor-full", "addgene_id": "68556", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68556.depositor-full.gb" }, @@ -1489,7 +1766,10 @@ "plasmid_name": "A1-LCD+7F-7Y", "sequence-type": "addgene-full", "addgene_id": "178660", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178660.addgene-full.gb" }, @@ -1498,7 +1778,10 @@ "plasmid_name": "pNL(CMV)Luc2-Turbo RFP/CMV/WPREdU3", "sequence-type": "addgene-full", "addgene_id": "136959", - "references": [], + "references": [ + "https://doi.org/10.18632/oncotarget.26024", + "https://www.ncbi.nlm.nih.gov/pubmed/30220977" + ], "kit": null, "file": "data/addgene_plasmids/136959.addgene-full.gb" }, @@ -1507,7 +1790,6 @@ "plasmid_name": "R777-E292 Hs.RPS6KA2-nostop", "sequence-type": "addgene-full", "addgene_id": "70576", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -1519,7 +1801,10 @@ "plasmid_name": "HD201: pMVP (L3-L2) IRES-eGFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121747", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121747.addgene-full.gb" }, @@ -1528,7 +1813,10 @@ "plasmid_name": "pDONR223_BMP4_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82937", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82937.addgene-full.gb" }, @@ -1537,7 +1825,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RIOK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158188", - "references": [], "kit": null, "file": "data/addgene_plasmids/158188.addgene-full.gb" }, @@ -1546,7 +1833,10 @@ "plasmid_name": "pGAMA-YAP", "sequence-type": "addgene-full", "addgene_id": "74942", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2016.02.036", + "https://www.ncbi.nlm.nih.gov/pubmed/26947063" + ], "kit": null, "file": "data/addgene_plasmids/74942.addgene-full.gb" }, @@ -1555,7 +1845,10 @@ "plasmid_name": "plenti-UBC- IKZF4-3xHA-pGK-PUR", "sequence-type": "addgene-full", "addgene_id": "107384", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107384.addgene-full.gb" }, @@ -1564,7 +1857,10 @@ "plasmid_name": "TFORF3189", "sequence-type": "addgene-full", "addgene_id": "144665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144665.addgene-full.gb" }, @@ -1573,7 +1869,10 @@ "plasmid_name": "pBABEpuro-ARAF_S214F", "sequence-type": "depositor-full", "addgene_id": "51078", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI72763", + "https://www.ncbi.nlm.nih.gov/pubmed/24569458" + ], "kit": null, "file": "data/addgene_plasmids/51078.depositor-full.gb" }, @@ -1582,7 +1881,10 @@ "plasmid_name": "pDONR221_MFSD10", "sequence-type": "addgene-full", "addgene_id": "131890", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131890.addgene-full.gb" }, @@ -1591,7 +1893,10 @@ "plasmid_name": "pMuLE ENTR U6 stuffer sgRNA scaffold L1-L4", "sequence-type": "depositor-full", "addgene_id": "62128", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62128.depositor-full.gb" }, @@ -1600,7 +1905,10 @@ "plasmid_name": "pDONR223_FAM196A_p.Q46R", "sequence-type": "addgene-full", "addgene_id": "81451", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -1612,7 +1920,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_W208L", "sequence-type": "addgene-full", "addgene_id": "221486", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221486.addgene-full.gb" }, @@ -1621,7 +1932,9 @@ "plasmid_name": "nTALECD for_MSH1 exon21_1397NC", "sequence-type": "addgene-full", "addgene_id": "193381", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "file": "data/addgene_plasmids/193381.addgene-full.gb" }, @@ -1630,7 +1943,10 @@ "plasmid_name": "pDONR221-SLC12A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161074", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161074.addgene-full.gb" }, @@ -1639,7 +1955,10 @@ "plasmid_name": "KK901: pMVP/SB/Zeo-DEST", "sequence-type": "addgene-full", "addgene_id": "121868", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121868.addgene-full.gb" }, @@ -1648,7 +1967,10 @@ "plasmid_name": "pLX303-PCDH7-a", "sequence-type": "addgene-full", "addgene_id": "108538", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-1267-T", + "https://www.ncbi.nlm.nih.gov/pubmed/27821484" + ], "kit": null, "file": "data/addgene_plasmids/108538.addgene-full.gb" }, @@ -1657,7 +1979,10 @@ "plasmid_name": "p6326 pHAGE-P-CMVt-N-HA-GAW-HERC2-F2", "sequence-type": "addgene-full", "addgene_id": "100136", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100136.addgene-full.gb" }, @@ -1666,7 +1991,10 @@ "plasmid_name": "pDONR223_RHOA_WT", "sequence-type": "addgene-full", "addgene_id": "81805", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81805.addgene-full.gb" }, @@ -1675,7 +2003,10 @@ "plasmid_name": "pCSDest2-2XNLS-SpCas9-MT3-NLS-3XHA-NLS-TALentry", "sequence-type": "depositor-full", "addgene_id": "69233", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3624", + "https://www.ncbi.nlm.nih.gov/pubmed/26480473" + ], "kit": null, "file": "data/addgene_plasmids/69233.depositor-full.gb" }, @@ -1684,7 +2015,10 @@ "plasmid_name": "pMOS010: CheRiff-eGFP channelrhodopsin (plasma membrane)", "sequence-type": "addgene-full", "addgene_id": "163044", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163044.addgene-full.gb" }, @@ -1693,7 +2027,10 @@ "plasmid_name": "TFORF3109", "sequence-type": "addgene-full", "addgene_id": "144585", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144585.addgene-full.gb" }, @@ -1702,7 +2039,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP6_nostop", "sequence-type": "addgene-full", "addgene_id": "149309", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149309.addgene-full.gb" }, @@ -1711,7 +2051,10 @@ "plasmid_name": "pHAGE-AKT3-M339I", "sequence-type": "addgene-full", "addgene_id": "116105", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116105.addgene-full.gb" }, @@ -1720,7 +2063,10 @@ "plasmid_name": "pDONR223_SYCP1_p.E442K", "sequence-type": "addgene-full", "addgene_id": "81585", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -1732,7 +2078,10 @@ "plasmid_name": "pEBTetD-SNAP-CPAP", "sequence-type": "addgene-full", "addgene_id": "136816", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136816.addgene-full.gb" }, @@ -1741,7 +2090,6 @@ "plasmid_name": "Hs.KRAS4b S17N", "sequence-type": "depositor-full", "addgene_id": "83156", - "references": [], "kit": null, "file": "data/addgene_plasmids/83156.depositor-full.gb" }, @@ -1750,7 +2098,10 @@ "plasmid_name": "pLenti-161K enhancer-ETS-CORE-MUT-minP:fLuc-TK:rLuc", "sequence-type": "addgene-full", "addgene_id": "138367", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138367.addgene-full.gb" }, @@ -1759,7 +2110,10 @@ "plasmid_name": "pDEST40-mPTER", "sequence-type": "addgene-full", "addgene_id": "224864", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.03.21.586194", + "https://www.ncbi.nlm.nih.gov/pubmed/38562797" + ], "kit": null, "file": "data/addgene_plasmids/224864.addgene-full.gb" }, @@ -1768,7 +2122,10 @@ "plasmid_name": "pDONR223_FBXW7_p.V464E", "sequence-type": "addgene-full", "addgene_id": "82878", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82878.addgene-full.gb" }, @@ -1777,7 +2134,10 @@ "plasmid_name": "pDONR221-ZNF727", "sequence-type": "depositor-full", "addgene_id": "101466", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101466.depositor-full.gb" }, @@ -1786,7 +2146,10 @@ "plasmid_name": "pENTR223-PARK7V51G", "sequence-type": "addgene-full", "addgene_id": "115178", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115178.addgene-full.gb" }, @@ -1795,7 +2158,10 @@ "plasmid_name": "pHAGE-ERBB2-G776delinsVC", "sequence-type": "addgene-full", "addgene_id": "116331", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116331.addgene-full.gb" }, @@ -1804,7 +2170,10 @@ "plasmid_name": "MiniCoopR U6:gRNA, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118840", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118840.addgene-full.gb" }, @@ -1813,7 +2182,10 @@ "plasmid_name": "TFORF3329", "sequence-type": "addgene-full", "addgene_id": "144805", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144805.addgene-full.gb" }, @@ -1822,7 +2194,10 @@ "plasmid_name": "pDONR223-ZNF268", "sequence-type": "addgene-full", "addgene_id": "88012", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88012.addgene-full.gb" }, @@ -1831,7 +2206,10 @@ "plasmid_name": "pcDNA3.2/NS5", "sequence-type": "addgene-full", "addgene_id": "120825", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120825.addgene-full.gb" }, @@ -1840,7 +2218,10 @@ "plasmid_name": "pDONR221_SLC12A5", "sequence-type": "addgene-full", "addgene_id": "131944", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131944.addgene-full.gb" }, @@ -1849,7 +2230,10 @@ "plasmid_name": "pdRBFC-B2-YC", "sequence-type": "addgene-full", "addgene_id": "74722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.virol.2015.08.023", + "https://www.ncbi.nlm.nih.gov/pubmed/26351203" + ], "kit": null, "file": "data/addgene_plasmids/74722.addgene-full.gb" }, @@ -1858,7 +2242,10 @@ "plasmid_name": "DDX56", "sequence-type": "addgene-full", "addgene_id": "155530", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155530.addgene-full.gb" }, @@ -1867,7 +2254,10 @@ "plasmid_name": "pME-CD44a", "sequence-type": "addgene-full", "addgene_id": "109575", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109575.addgene-full.gb" }, @@ -1876,7 +2266,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp2", "sequence-type": "addgene-full", "addgene_id": "168863", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168863.addgene-full.gb" }, @@ -1885,7 +2278,10 @@ "plasmid_name": "pDONR221-SLC35E2B_STOP", "sequence-type": "addgene-full", "addgene_id": "161240", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161240.addgene-full.gb" }, @@ -1894,7 +2290,10 @@ "plasmid_name": "5'-BirA-FLAG Chtop-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212090", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212090.addgene-full.gb" }, @@ -1903,7 +2302,10 @@ "plasmid_name": "pDONR221-SLC13A4_STOP", "sequence-type": "depositor-full", "addgene_id": "161099", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161099.depositor-full.gb" }, @@ -1912,7 +2314,10 @@ "plasmid_name": "pLXI_TRC401 LacZ", "sequence-type": "addgene-full", "addgene_id": "111183", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.44161", + "https://www.ncbi.nlm.nih.gov/pubmed/30860482" + ], "kit": null, "file": "data/addgene_plasmids/111183.addgene-full.gb" }, @@ -1921,7 +2326,10 @@ "plasmid_name": "LIIIalpha R C-D", "sequence-type": "depositor-full", "addgene_id": "54385", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54385.depositor-full.gb" }, @@ -1930,7 +2338,6 @@ "plasmid_name": "pCWXPG-UBI-Glis3M412", "sequence-type": "addgene-full", "addgene_id": "114301", - "references": [], "kit": null, "file": "data/addgene_plasmids/114301.addgene-full.gb" }, @@ -1939,7 +2346,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12V", "sequence-type": "addgene-full", "addgene_id": "81665", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -1951,7 +2361,10 @@ "plasmid_name": "pMuLE ENTR CMV LacZ L5-L2", "sequence-type": "depositor-full", "addgene_id": "62166", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62166.depositor-full.gb" }, @@ -1960,7 +2373,6 @@ "plasmid_name": "R777-E147 Hs.PAK1", "sequence-type": "depositor-full", "addgene_id": "70431", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -1972,7 +2384,10 @@ "plasmid_name": "pAG413GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14382", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -1984,7 +2399,10 @@ "plasmid_name": "pEN_TT 3xFLAG Luciferase", "sequence-type": "addgene-full", "addgene_id": "98391", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98391.addgene-full.gb" }, @@ -1993,7 +2411,10 @@ "plasmid_name": "p21-S208C/M694V-MEFV", "sequence-type": "addgene-full", "addgene_id": "134709", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "file": "data/addgene_plasmids/134709.addgene-full.gb" }, @@ -2002,7 +2423,6 @@ "plasmid_name": "pENT-L1-Kozak-PH-domain-L2", "sequence-type": "addgene-full", "addgene_id": "186354", - "references": [], "kit": null, "file": "data/addgene_plasmids/186354.addgene-full.gb" }, @@ -2011,7 +2431,10 @@ "plasmid_name": "JDW 743 (pDONR221-EYFP-hKRAS4B-WT)", "sequence-type": "addgene-full", "addgene_id": "156402", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156402.addgene-full.gb" }, @@ -2020,7 +2443,10 @@ "plasmid_name": "pDEST_6xUAS:miRFP670-cetn4", "sequence-type": "addgene-full", "addgene_id": "192357", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.82094", + "https://www.ncbi.nlm.nih.gov/pubmed/36398880" + ], "kit": null, "file": "data/addgene_plasmids/192357.addgene-full.gb" }, @@ -2029,7 +2455,10 @@ "plasmid_name": "pAG425GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14418", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -2041,7 +2470,10 @@ "plasmid_name": "pDONR223_GPR137B_p.C212S", "sequence-type": "addgene-full", "addgene_id": "82757", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82757.addgene-full.gb" }, @@ -2050,7 +2482,10 @@ "plasmid_name": "IY704: pMVP (L1-R5) EF1a promoter", "sequence-type": "addgene-full", "addgene_id": "121693", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121693.addgene-full.gb" }, @@ -2059,7 +2494,10 @@ "plasmid_name": "MLKG1delKASHec", "sequence-type": "addgene-full", "addgene_id": "130846", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130846.addgene-full.gb" }, @@ -2068,7 +2506,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS3", "sequence-type": "depositor-full", "addgene_id": "20242", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20242.depositor-full.gb" }, @@ -2077,7 +2518,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-Spike", "sequence-type": "addgene-full", "addgene_id": "168911", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168911.addgene-full.gb" }, @@ -2086,7 +2530,10 @@ "plasmid_name": "TFORF3047", "sequence-type": "addgene-full", "addgene_id": "144523", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144523.addgene-full.gb" }, @@ -2095,7 +2542,10 @@ "plasmid_name": "pAM100", "sequence-type": "addgene-full", "addgene_id": "226692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226692.addgene-full.gb" }, @@ -2104,7 +2554,10 @@ "plasmid_name": "pLX304-DCK*-IRES-Td", "sequence-type": "addgene-full", "addgene_id": "176298", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "file": "data/addgene_plasmids/176298.addgene-full.gb" }, @@ -2113,7 +2566,9 @@ "plasmid_name": "p5E-dr_Ubi (JDW 804)", "sequence-type": "addgene-full", "addgene_id": "224542", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224542.addgene-full.gb" }, @@ -2122,7 +2577,10 @@ "plasmid_name": "pInducer21-3xFlag-S208C-MEFV", "sequence-type": "addgene-full", "addgene_id": "167019", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-2449-4_12", + "https://www.ncbi.nlm.nih.gov/pubmed/35759198" + ], "kit": null, "file": "data/addgene_plasmids/167019.addgene-full.gb" }, @@ -2131,7 +2589,10 @@ "plasmid_name": "pENTR-BPC4 (NON-STOP)", "sequence-type": "addgene-full", "addgene_id": "118686", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118686.addgene-full.gb" }, @@ -2140,7 +2601,10 @@ "plasmid_name": "pAFMW-Nbr[R280A,K284A]", "sequence-type": "addgene-full", "addgene_id": "188598", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188598.addgene-full.gb" }, @@ -2149,7 +2613,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP2_stop", "sequence-type": "addgene-full", "addgene_id": "168545", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168545.addgene-full.gb" }, @@ -2158,7 +2625,10 @@ "plasmid_name": "p7270 MSCV-N-HA-IRES-PURO Empty", "sequence-type": "addgene-full", "addgene_id": "163302", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01197-14", + "https://www.ncbi.nlm.nih.gov/pubmed/24850740" + ], "kit": null, "file": "data/addgene_plasmids/163302.addgene-full.gb" }, @@ -2167,7 +2637,10 @@ "plasmid_name": "TFORF3501", "sequence-type": "addgene-full", "addgene_id": "144977", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144977.addgene-full.gb" }, @@ -2176,7 +2649,9 @@ "plasmid_name": "pDONR221-HNRNPH1(2of2)", "sequence-type": "addgene-full", "addgene_id": "166180", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166180.addgene-full.gb" }, @@ -2185,7 +2660,10 @@ "plasmid_name": "pHAGE-EGFR-E709Q", "sequence-type": "addgene-full", "addgene_id": "116243", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116243.addgene-full.gb" }, @@ -2194,7 +2672,10 @@ "plasmid_name": "pME-CreLite", "sequence-type": "addgene-full", "addgene_id": "131782", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.232", + "https://www.ncbi.nlm.nih.gov/pubmed/32745301" + ], "kit": null, "file": "data/addgene_plasmids/131782.addgene-full.gb" }, @@ -2203,7 +2684,10 @@ "plasmid_name": "TFORF3182", "sequence-type": "addgene-full", "addgene_id": "144658", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144658.addgene-full.gb" }, @@ -2212,7 +2696,10 @@ "plasmid_name": "pB-TAG-NICD", "sequence-type": "addgene-full", "addgene_id": "130934", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.07.090", + "https://www.ncbi.nlm.nih.gov/pubmed/31461642" + ], "kit": null, "file": "data/addgene_plasmids/130934.addgene-full.gb" }, @@ -2221,7 +2708,10 @@ "plasmid_name": "pDONR223_PYGL_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82991", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82991.addgene-full.gb" }, @@ -2230,7 +2720,10 @@ "plasmid_name": "pAG426GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14228", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -2242,7 +2735,10 @@ "plasmid_name": "JK305: pMVP/Blast-DEST", "sequence-type": "addgene-full", "addgene_id": "121855", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121855.addgene-full.gb" }, @@ -2251,7 +2747,10 @@ "plasmid_name": "pDONR221-In18runon-PTPN22", "sequence-type": "addgene-full", "addgene_id": "195377", - "references": [], + "references": [ + "https://doi.org/10.2337/db15-0322", + "https://www.ncbi.nlm.nih.gov/pubmed/26631741" + ], "kit": null, "file": "data/addgene_plasmids/195377.addgene-full.gb" }, @@ -2260,7 +2759,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a M", "sequence-type": "addgene-full", "addgene_id": "89382", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89382.addgene-full.gb" }, @@ -2281,7 +2783,10 @@ "plasmid_name": "pHAGE-BRAF-D594N", "sequence-type": "addgene-full", "addgene_id": "116138", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116138.addgene-full.gb" }, @@ -2290,7 +2795,10 @@ "plasmid_name": "pLenti-pHluorin_M153R-CD63-mScarlet", "sequence-type": "addgene-full", "addgene_id": "172118", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-15747-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32350252" + ], "kit": null, "file": "data/addgene_plasmids/172118.addgene-full.gb" }, @@ -2299,7 +2807,10 @@ "plasmid_name": "pDEST17-UbE2E3", "sequence-type": "addgene-full", "addgene_id": "15789", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "file": "data/addgene_plasmids/15789.addgene-full.gb" }, @@ -2308,7 +2819,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.E726K", "sequence-type": "addgene-full", "addgene_id": "82845", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82845.addgene-full.gb" }, @@ -2317,7 +2831,10 @@ "plasmid_name": "pME-mCherry-NS", "sequence-type": "addgene-full", "addgene_id": "108885", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "file": "data/addgene_plasmids/108885.addgene-full.gb" }, @@ -2326,7 +2843,10 @@ "plasmid_name": "pcDNA3.2/NS2A", "sequence-type": "addgene-full", "addgene_id": "120818", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120818.addgene-full.gb" }, @@ -2335,7 +2855,10 @@ "plasmid_name": "pDONR221_SLC25A16", "sequence-type": "addgene-full", "addgene_id": "131979", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131979.addgene-full.gb" }, @@ -2344,7 +2867,10 @@ "plasmid_name": "TFORF3362", "sequence-type": "addgene-full", "addgene_id": "144838", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144838.addgene-full.gb" }, @@ -2353,7 +2879,10 @@ "plasmid_name": "pMLS546", "sequence-type": "addgene-full", "addgene_id": "188883", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "file": "data/addgene_plasmids/188883.addgene-full.gb" }, @@ -2362,7 +2891,10 @@ "plasmid_name": "MAC-ACE2", "sequence-type": "addgene-full", "addgene_id": "158381", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158381.addgene-full.gb" }, @@ -2371,7 +2903,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp12", "sequence-type": "depositor-full", "addgene_id": "168892", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168892.depositor-full.gb" }, @@ -2380,7 +2915,10 @@ "plasmid_name": "pDONR223_VHL_p.H115Y", "sequence-type": "addgene-full", "addgene_id": "81658", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -2392,7 +2930,10 @@ "plasmid_name": "pLV[TetOn]-Puro-TRE3G>mNeurog2", "sequence-type": "addgene-full", "addgene_id": "198754", - "references": [], + "references": [ + "https://doi.org/10.1038/s41380-021-01117-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33972691" + ], "kit": null, "file": "data/addgene_plasmids/198754.addgene-full.gb" }, @@ -2401,7 +2942,10 @@ "plasmid_name": "pDONR223_UNC93B1_WT", "sequence-type": "addgene-full", "addgene_id": "81977", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -2413,7 +2957,9 @@ "plasmid_name": "pMpGWB210", "sequence-type": "depositor-full", "addgene_id": "68601", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68601.depositor-full.gb" }, @@ -2422,7 +2968,10 @@ "plasmid_name": "pENT-R4-bpFOG-L5", "sequence-type": "addgene-full", "addgene_id": "186369", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186369.addgene-full.gb" }, @@ -2431,7 +2980,6 @@ "plasmid_name": "pAM-35s-CBL2-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102394", - "references": [], "kit": null, "file": "data/addgene_plasmids/102394.addgene-full.gb" }, @@ -2440,7 +2988,10 @@ "plasmid_name": "pLenti CMV/TO Zeo dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134734", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "file": "data/addgene_plasmids/134734.addgene-full.gb" }, @@ -2449,7 +3000,10 @@ "plasmid_name": "MAC_N_VPS26C", "sequence-type": "addgene-full", "addgene_id": "209689", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209689.addgene-full.gb" }, @@ -2458,7 +3012,10 @@ "plasmid_name": "pDE43-MCKq26", "sequence-type": "depositor-full", "addgene_id": "27336", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "file": "data/addgene_plasmids/27336.depositor-full.gb" }, @@ -2467,7 +3024,10 @@ "plasmid_name": "IGF2BP1", "sequence-type": "addgene-full", "addgene_id": "155676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155676.addgene-full.gb" }, @@ -2476,7 +3036,10 @@ "plasmid_name": "SITS-ccdb-EGFP", "sequence-type": "addgene-full", "addgene_id": "118752", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/118752.addgene-full.gb" }, @@ -2485,7 +3048,10 @@ "plasmid_name": "actc1b-mKate2-rab39ba", "sequence-type": "addgene-full", "addgene_id": "109633", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109633.addgene-full.gb" }, @@ -2494,7 +3060,10 @@ "plasmid_name": "TFORF3241", "sequence-type": "addgene-full", "addgene_id": "144717", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144717.addgene-full.gb" }, @@ -2503,7 +3072,10 @@ "plasmid_name": "pHAGE-FLT1-R781Q", "sequence-type": "addgene-full", "addgene_id": "116397", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116397.addgene-full.gb" }, @@ -2512,7 +3084,10 @@ "plasmid_name": "pBabe_puro_DEST_Flag_TNIK", "sequence-type": "addgene-full", "addgene_id": "45276", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-12-0592", + "https://www.ncbi.nlm.nih.gov/pubmed/23764425" + ], "kit": null, "file": "data/addgene_plasmids/45276.addgene-full.gb" }, @@ -2521,7 +3096,10 @@ "plasmid_name": "pDONR223_EYS_p.R26Q", "sequence-type": "addgene-full", "addgene_id": "81523", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -2533,7 +3111,10 @@ "plasmid_name": "pAAVS1-P-CAG-mCh", "sequence-type": "depositor-full", "addgene_id": "80492", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "file": "data/addgene_plasmids/80492.depositor-full.gb" }, @@ -2542,7 +3123,10 @@ "plasmid_name": "pSF279", "sequence-type": "addgene-full", "addgene_id": "167674", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167674.addgene-full.gb" }, @@ -2551,7 +3135,6 @@ "plasmid_name": "R777-E135 Hs.MRAS", "sequence-type": "depositor-full", "addgene_id": "70419", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -2563,7 +3146,10 @@ "plasmid_name": "pDONR221_SLC22A10", "sequence-type": "addgene-full", "addgene_id": "132046", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132046.addgene-full.gb" }, @@ -2572,7 +3158,6 @@ "plasmid_name": "p223-RV-dlx-dio-Tdtomato-T2A-SYPEGFP", "sequence-type": "addgene-full", "addgene_id": "185699", - "references": [], "kit": null, "file": "data/addgene_plasmids/185699.addgene-full.gb" }, @@ -2581,7 +3166,9 @@ "plasmid_name": "pDRFLIP35", "sequence-type": "depositor-full", "addgene_id": "65513", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65513.depositor-full.gb" }, @@ -2590,7 +3177,10 @@ "plasmid_name": "Tol2-krt4-RFP", "sequence-type": "addgene-full", "addgene_id": "97149", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "file": "data/addgene_plasmids/97149.addgene-full.gb" }, @@ -2599,7 +3189,6 @@ "plasmid_name": "DENV2 NS2B-NS3 protease: Co-expression of DENV-2 NS2B and NS3", "sequence-type": "addgene-full", "addgene_id": "204808", - "references": [], "kit": null, "file": "data/addgene_plasmids/204808.addgene-full.gb" }, @@ -2608,7 +3197,6 @@ "plasmid_name": "pDONR221-usp25", "sequence-type": "addgene-full", "addgene_id": "192733", - "references": [], "kit": null, "file": "data/addgene_plasmids/192733.addgene-full.gb" }, @@ -2617,7 +3205,6 @@ "plasmid_name": "R777-E099 Hs.GRB2", "sequence-type": "depositor-full", "addgene_id": "70383", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -2629,7 +3216,10 @@ "plasmid_name": "pGAMA-empty", "sequence-type": "depositor-full", "addgene_id": "74755", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2016.02.036", + "https://www.ncbi.nlm.nih.gov/pubmed/26947063" + ], "kit": null, "file": "data/addgene_plasmids/74755.depositor-full.gb" }, @@ -2638,7 +3228,10 @@ "plasmid_name": "pDL16", "sequence-type": "addgene-full", "addgene_id": "175908", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175908.addgene-full.gb" }, @@ -2647,7 +3240,6 @@ "plasmid_name": "pLenti6.3_HES7", "sequence-type": "addgene-full", "addgene_id": "124075", - "references": [], "kit": null, "file": "data/addgene_plasmids/124075.addgene-full.gb" }, @@ -2656,7 +3248,10 @@ "plasmid_name": "pCFJ907", "sequence-type": "depositor-full", "addgene_id": "44473", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44473.depositor-full.gb" }, @@ -2665,7 +3260,10 @@ "plasmid_name": "pKM1137", "sequence-type": "depositor-full", "addgene_id": "8841", - "references": [], + "references": [ + "https://doi.org/10.1016/S0014-5793%2803%2900070-X", + "https://www.ncbi.nlm.nih.gov/pubmed/12606030" + ], "kit": null, "file": "data/addgene_plasmids/8841.depositor-full.gb" }, @@ -2674,7 +3272,10 @@ "plasmid_name": "pHAGE-KRAS", "sequence-type": "addgene-full", "addgene_id": "116755", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116755.addgene-full.gb" }, @@ -2683,7 +3284,6 @@ "plasmid_name": "pDONR221-ACE2", "sequence-type": "addgene-full", "addgene_id": "158438", - "references": [], "kit": null, "file": "data/addgene_plasmids/158438.addgene-full.gb" }, @@ -2692,7 +3292,10 @@ "plasmid_name": "pAG303GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14157", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -2704,7 +3307,10 @@ "plasmid_name": "p2R3z-AtU3b-tRNA-ccdB-gRNA", "sequence-type": "addgene-full", "addgene_id": "118390", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "file": "data/addgene_plasmids/118390.addgene-full.gb" }, @@ -2713,7 +3319,10 @@ "plasmid_name": "pRECLV103_PGBD5_B", "sequence-type": "addgene-full", "addgene_id": "168053", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.3866", + "https://www.ncbi.nlm.nih.gov/pubmed/28504702" + ], "kit": null, "file": "data/addgene_plasmids/168053.addgene-full.gb" }, @@ -2722,7 +3331,10 @@ "plasmid_name": "pDONR223-DDR1", "sequence-type": "addgene-full", "addgene_id": "23910", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -2734,7 +3346,6 @@ "plasmid_name": "IDG_SCN2B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161624", - "references": [], "kit": null, "file": "data/addgene_plasmids/161624.addgene-full.gb" }, @@ -2743,7 +3354,10 @@ "plasmid_name": "pCM5.44", "sequence-type": "depositor-full", "addgene_id": "19389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19389.depositor-full.gb" }, @@ -2752,7 +3366,10 @@ "plasmid_name": "pHAGE-SIRPB1-W183*", "sequence-type": "addgene-full", "addgene_id": "116681", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116681.addgene-full.gb" }, @@ -2761,7 +3378,10 @@ "plasmid_name": "pDONR221_SLC35F3", "sequence-type": "addgene-full", "addgene_id": "132109", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132109.addgene-full.gb" }, @@ -2770,7 +3390,10 @@ "plasmid_name": "pT2-cryR;cldn5bCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90154", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90154.addgene-full.gb" }, @@ -2779,7 +3402,10 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ashL344P-mCerulean", "sequence-type": "depositor-full", "addgene_id": "69581", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1311126110", + "https://www.ncbi.nlm.nih.gov/pubmed/24006363" + ], "kit": null, "file": "data/addgene_plasmids/69581.depositor-full.gb" }, @@ -2788,7 +3414,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO R4-R3", "sequence-type": "depositor-full", "addgene_id": "62100", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62100.depositor-full.gb" }, @@ -2809,7 +3438,6 @@ "plasmid_name": "R777-E173 Hs.PIK3R2", "sequence-type": "depositor-full", "addgene_id": "70457", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -2821,7 +3449,10 @@ "plasmid_name": "pDONR221-SLC7A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161410", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161410.addgene-full.gb" }, @@ -2830,7 +3461,10 @@ "plasmid_name": "tetO-HEY2", "sequence-type": "addgene-full", "addgene_id": "170691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170691.addgene-full.gb" }, @@ -2839,7 +3473,10 @@ "plasmid_name": "pAG425GAL-ccdB-HA", "sequence-type": "addgene-full", "addgene_id": "14249", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -2851,7 +3488,10 @@ "plasmid_name": "pDONR221-SLC22A31_STOP", "sequence-type": "depositor-full", "addgene_id": "161202", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161202.depositor-full.gb" }, @@ -2860,7 +3500,10 @@ "plasmid_name": "pSEM234 - pEXP[Pmlc-1 | mCherry(2xNLS) | cbr-tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159795", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000302", + "https://www.ncbi.nlm.nih.gov/pubmed/32908967" + ], "kit": null, "file": "data/addgene_plasmids/159795.addgene-full.gb" }, @@ -2869,7 +3512,10 @@ "plasmid_name": "pHAGE-PIK3CB-R604Pfs*29", "sequence-type": "addgene-full", "addgene_id": "116561", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116561.addgene-full.gb" }, @@ -2878,7 +3524,10 @@ "plasmid_name": "Crimson/P2A-NLS/HA-HumBeta (pSLIK2)", "sequence-type": "addgene-full", "addgene_id": "113857", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0200955", + "https://www.ncbi.nlm.nih.gov/pubmed/30110337" + ], "kit": null, "file": "data/addgene_plasmids/113857.addgene-full.gb" }, @@ -2887,7 +3536,10 @@ "plasmid_name": "pDONR223_SDHB_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83005", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83005.addgene-full.gb" }, @@ -2896,7 +3548,10 @@ "plasmid_name": "141_pT3TS_iCre", "sequence-type": "addgene-full", "addgene_id": "171793", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "file": "data/addgene_plasmids/171793.addgene-full.gb" }, @@ -2905,7 +3560,10 @@ "plasmid_name": "pDONR221-TMEM165", "sequence-type": "addgene-full", "addgene_id": "132272", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132272.addgene-full.gb" }, @@ -2914,7 +3572,10 @@ "plasmid_name": "Nup98-pDONR221", "sequence-type": "addgene-full", "addgene_id": "124241", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbamcr.2017.05.020", + "https://www.ncbi.nlm.nih.gov/pubmed/28554770" + ], "kit": null, "file": "data/addgene_plasmids/124241.addgene-full.gb" }, @@ -2923,7 +3584,10 @@ "plasmid_name": "MOSMO_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176975", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176975.addgene-full.gb" }, @@ -2932,7 +3596,6 @@ "plasmid_name": "Hs.KRAS4b G12C", "sequence-type": "depositor-full", "addgene_id": "83130", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -2944,7 +3607,10 @@ "plasmid_name": "pB_35S/mEGFP", "sequence-type": "addgene-full", "addgene_id": "135320", - "references": [], + "references": [ + "https://doi.org/10.1111/ppl.13079", + "https://www.ncbi.nlm.nih.gov/pubmed/32096870" + ], "kit": null, "file": "data/addgene_plasmids/135320.addgene-full.gb" }, @@ -2953,7 +3619,10 @@ "plasmid_name": "pCR8/GW/TOPO-ETS1", "sequence-type": "addgene-full", "addgene_id": "98621", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98621.addgene-full.gb" }, @@ -2962,7 +3631,6 @@ "plasmid_name": "g15s pDONR", "sequence-type": "addgene-full", "addgene_id": "117463", - "references": [], "kit": null, "file": "data/addgene_plasmids/117463.addgene-full.gb" }, @@ -2971,7 +3639,10 @@ "plasmid_name": "pDONR223_DDIT3_WT", "sequence-type": "addgene-full", "addgene_id": "82107", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82107.addgene-full.gb" }, @@ -2980,7 +3651,10 @@ "plasmid_name": "C453-E17: attB4-PGKp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162976", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -2992,7 +3666,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 SKICH (1-140D)", "sequence-type": "addgene-full", "addgene_id": "175768", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175768.addgene-full.gb" }, @@ -3001,7 +3678,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp13", "sequence-type": "depositor-full", "addgene_id": "168910", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168910.depositor-full.gb" }, @@ -3010,7 +3690,10 @@ "plasmid_name": "pENTR223-BFRF1", "sequence-type": "addgene-full", "addgene_id": "195801", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195801.addgene-full.gb" }, @@ -3019,7 +3702,6 @@ "plasmid_name": "pcDNA3.1-ccdB-Renilla", "sequence-type": "addgene-full", "addgene_id": "87065", - "references": [], "kit": null, "file": "data/addgene_plasmids/87065.addgene-full.gb" }, @@ -3028,7 +3710,10 @@ "plasmid_name": "Flag-HA-VCPIP1", "sequence-type": "addgene-full", "addgene_id": "22592", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22592.addgene-full.gb" }, @@ -3037,7 +3722,10 @@ "plasmid_name": "pDONR221_SLC4A11", "sequence-type": "addgene-full", "addgene_id": "132192", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132192.addgene-full.gb" }, @@ -3046,7 +3734,10 @@ "plasmid_name": "pENTR2-L3-SfoI-EGFP-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141018", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141018.addgene-full.gb" }, @@ -3055,7 +3746,10 @@ "plasmid_name": "pcDNA5FRT/TO-RNF185-GFP", "sequence-type": "addgene-full", "addgene_id": "113498", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113498.addgene-full.gb" }, @@ -3064,7 +3758,10 @@ "plasmid_name": "pLenti-Zyxin-B (aa309-564)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187694", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187694.addgene-full.gb" }, @@ -3073,7 +3770,10 @@ "plasmid_name": "pET28c-Ku", "sequence-type": "addgene-full", "addgene_id": "161936", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.0c00277", + "https://www.ncbi.nlm.nih.gov/pubmed/32926785" + ], "kit": null, "file": "data/addgene_plasmids/161936.addgene-full.gb" }, @@ -3082,7 +3782,6 @@ "plasmid_name": "IDG_TMEM63B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161682", - "references": [], "kit": null, "file": "data/addgene_plasmids/161682.addgene-full.gb" }, @@ -3091,7 +3790,10 @@ "plasmid_name": "mTALEAD 16S rRNA-1131T10C", "sequence-type": "addgene-full", "addgene_id": "210836", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "file": "data/addgene_plasmids/210836.addgene-full.gb" }, @@ -3100,7 +3802,9 @@ "plasmid_name": "pMpGWB301", "sequence-type": "depositor-full", "addgene_id": "68629", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68629.depositor-full.gb" }, @@ -3109,7 +3813,10 @@ "plasmid_name": "HSP70l-APEX2-GBP in pDEST-Tol2-pA2-acrys-mCherry", "sequence-type": "addgene-full", "addgene_id": "71282", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/71282.addgene-full.gb" }, @@ -3118,7 +3825,10 @@ "plasmid_name": "pHAGE-IGF1R-E1356K", "sequence-type": "addgene-full", "addgene_id": "116413", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116413.addgene-full.gb" }, @@ -3127,7 +3837,10 @@ "plasmid_name": "pDONR221-SLC19A1_STOP", "sequence-type": "depositor-full", "addgene_id": "161432", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161432.depositor-full.gb" }, @@ -3136,7 +3849,10 @@ "plasmid_name": "AAVS1-TRE-SHH", "sequence-type": "addgene-full", "addgene_id": "134350", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-019-0085-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30936566" + ], "kit": null, "file": "data/addgene_plasmids/134350.addgene-full.gb" }, @@ -3145,7 +3861,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16 E7 H73A", "sequence-type": "addgene-full", "addgene_id": "191547", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "file": "data/addgene_plasmids/191547.addgene-full.gb" }, @@ -3154,7 +3873,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab11A", "sequence-type": "addgene-full", "addgene_id": "166430", - "references": [], "kit": null, "file": "data/addgene_plasmids/166430.addgene-full.gb" }, @@ -3163,7 +3881,10 @@ "plasmid_name": "pINDUCER20-Flag-NLS-hSPDEF delta1", "sequence-type": "addgene-full", "addgene_id": "100874", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2017.03.048", + "https://www.ncbi.nlm.nih.gov/pubmed/28390865" + ], "kit": null, "file": "data/addgene_plasmids/100874.addgene-full.gb" }, @@ -3172,7 +3893,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term RNPS1", "sequence-type": "addgene-full", "addgene_id": "187574", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187574.addgene-full.gb" }, @@ -3181,7 +3905,9 @@ "plasmid_name": "pDestTol2-QUAS:mApple-he1.1:CFP", "sequence-type": "addgene-full", "addgene_id": "184812", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "file": "data/addgene_plasmids/184812.addgene-full.gb" }, @@ -3190,7 +3916,10 @@ "plasmid_name": "791 p3E-2A-pCS2MCSpA v2", "sequence-type": "addgene-full", "addgene_id": "195973", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195973.addgene-full.gb" }, @@ -3199,7 +3928,10 @@ "plasmid_name": "pHAGE-OXA1L", "sequence-type": "addgene-full", "addgene_id": "116768", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116768.addgene-full.gb" }, @@ -3208,7 +3940,10 @@ "plasmid_name": "pDONR221_SLC4A8", "sequence-type": "addgene-full", "addgene_id": "132300", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132300.addgene-full.gb" }, @@ -3217,7 +3952,10 @@ "plasmid_name": "pSK234", "sequence-type": "addgene-full", "addgene_id": "131149", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/29056345" + ], "kit": null, "file": "data/addgene_plasmids/131149.addgene-full.gb" }, @@ -3226,7 +3964,10 @@ "plasmid_name": "pHAGE-PIK3CA-E726K", "sequence-type": "addgene-full", "addgene_id": "116488", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116488.addgene-full.gb" }, @@ -3235,7 +3976,6 @@ "plasmid_name": "pENTR-CreERT2", "sequence-type": "addgene-full", "addgene_id": "139547", - "references": [], "kit": null, "file": "data/addgene_plasmids/139547.addgene-full.gb" }, @@ -3244,7 +3984,10 @@ "plasmid_name": "pDEST40-2XFL-Src-KD", "sequence-type": "addgene-full", "addgene_id": "140313", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140313.addgene-full.gb" }, @@ -3253,7 +3996,10 @@ "plasmid_name": "pT3-EF1\u03b1-Dest", "sequence-type": "addgene-full", "addgene_id": "133299", - "references": [], + "references": [ + "https://doi.org/10.1002/hep.22169", + "https://www.ncbi.nlm.nih.gov/pubmed/18214995" + ], "kit": null, "file": "data/addgene_plasmids/133299.addgene-full.gb" }, @@ -3262,7 +4008,6 @@ "plasmid_name": "p667-UBC-BRSK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135252", - "references": [], "kit": null, "file": "data/addgene_plasmids/135252.addgene-full.gb" }, @@ -3271,7 +4016,6 @@ "plasmid_name": "IDG_KCNK4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161619", - "references": [], "kit": null, "file": "data/addgene_plasmids/161619.addgene-full.gb" }, @@ -3280,7 +4024,10 @@ "plasmid_name": "pAUC40", "sequence-type": "depositor-full", "addgene_id": "71298", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-2958.2009.06906.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19843225" + ], "kit": null, "file": "data/addgene_plasmids/71298.depositor-full.gb" }, @@ -3289,7 +4036,10 @@ "plasmid_name": "pT3-N90-beta-catenin", "sequence-type": "addgene-full", "addgene_id": "31785", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0706578104", + "https://www.ncbi.nlm.nih.gov/pubmed/17785413" + ], "kit": null, "file": "data/addgene_plasmids/31785.addgene-full.gb" }, @@ -3298,7 +4048,10 @@ "plasmid_name": "pAG424GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14200", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -3310,7 +4063,10 @@ "plasmid_name": "pWS932", "sequence-type": "addgene-full", "addgene_id": "123055", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123055.addgene-full.gb" }, @@ -3319,7 +4075,10 @@ "plasmid_name": "pDONR221_SLC35D1", "sequence-type": "addgene-full", "addgene_id": "132134", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132134.addgene-full.gb" }, @@ -3328,7 +4087,10 @@ "plasmid_name": "pLX307-CRBN-3F-BirA", "sequence-type": "addgene-full", "addgene_id": "220146", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-024-01590-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38514884" + ], "kit": null, "file": "data/addgene_plasmids/220146.addgene-full.gb" }, @@ -3337,7 +4099,6 @@ "plasmid_name": "pEF 4r-GUS-3r", "sequence-type": "depositor-full", "addgene_id": "20097", - "references": [], "kit": null, "file": "data/addgene_plasmids/20097.depositor-full.gb" }, @@ -3346,7 +4107,10 @@ "plasmid_name": "pT2-cryR;basPEgfp", "sequence-type": "addgene-full", "addgene_id": "90169", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90169.addgene-full.gb" }, @@ -3355,7 +4119,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0483-luc2", "sequence-type": "addgene-full", "addgene_id": "214636", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214636.addgene-full.gb" }, @@ -3364,7 +4131,9 @@ "plasmid_name": "pMpGWB402", "sequence-type": "depositor-full", "addgene_id": "68667", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68667.depositor-full.gb" }, @@ -3373,7 +4142,10 @@ "plasmid_name": "pDONR223_SIP1_WT", "sequence-type": "addgene-full", "addgene_id": "82241", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82241.addgene-full.gb" }, @@ -3382,7 +4154,10 @@ "plasmid_name": "pDest-624 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161879", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -3394,7 +4169,6 @@ "plasmid_name": "pAG416-GAL-hnRNPA1", "sequence-type": "addgene-full", "addgene_id": "181710", - "references": [], "kit": null, "file": "data/addgene_plasmids/181710.addgene-full.gb" }, @@ -3403,7 +4177,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS-Ala271", "sequence-type": "addgene-full", "addgene_id": "158631", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158631.addgene-full.gb" }, @@ -3412,7 +4189,6 @@ "plasmid_name": "BRAF - A12G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216606", - "references": [], "kit": null, "file": "data/addgene_plasmids/216606.addgene-full.gb" }, @@ -3421,7 +4197,10 @@ "plasmid_name": "E3_pENTR_L3-L2_NG_G1397-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171735", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171735.addgene-full.gb" }, @@ -3430,7 +4209,10 @@ "plasmid_name": "pJRA106", "sequence-type": "addgene-full", "addgene_id": "209339", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209339.addgene-full.gb" }, @@ -3439,7 +4221,10 @@ "plasmid_name": "pENTR-R4R3-stop", "sequence-type": "addgene-full", "addgene_id": "113745", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -3451,7 +4236,10 @@ "plasmid_name": "pDONR223_OR2T33_p.F164V", "sequence-type": "addgene-full", "addgene_id": "81373", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -3463,7 +4251,10 @@ "plasmid_name": "MAC_N_ELF3", "sequence-type": "addgene-full", "addgene_id": "187740", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187740.addgene-full.gb" }, @@ -3472,7 +4263,10 @@ "plasmid_name": "pMDJ80 - pENTR[4-1] - Promoter - Psmu-2 (no_start)", "sequence-type": "addgene-full", "addgene_id": "159887", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159887.addgene-full.gb" }, @@ -3481,7 +4275,10 @@ "plasmid_name": "CFAP410_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176948", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176948.addgene-full.gb" }, @@ -3490,7 +4287,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-LGALS1", "sequence-type": "addgene-full", "addgene_id": "175755", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175755.addgene-full.gb" }, @@ -3499,7 +4299,10 @@ "plasmid_name": "pENTR223-BILF2", "sequence-type": "addgene-full", "addgene_id": "195788", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195788.addgene-full.gb" }, @@ -3508,7 +4311,10 @@ "plasmid_name": "pJAK1.B", "sequence-type": "depositor-full", "addgene_id": "29462", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2009.07.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19647016" + ], "kit": null, "file": "data/addgene_plasmids/29462.depositor-full.gb" }, @@ -3517,7 +4323,10 @@ "plasmid_name": "pAC8_PH-GST-Nter-GWs-Lox (VE5586)", "sequence-type": "addgene-full", "addgene_id": "163766", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-021-04715-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35132103" + ], "kit": null, "file": "data/addgene_plasmids/163766.addgene-full.gb" }, @@ -3526,7 +4335,10 @@ "plasmid_name": "p415GPD-3xHA-GW", "sequence-type": "depositor-full", "addgene_id": "63781", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63781.depositor-full.gb" }, @@ -3535,7 +4347,10 @@ "plasmid_name": "pHAGE-PTEN-N12T", "sequence-type": "addgene-full", "addgene_id": "116627", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116627.addgene-full.gb" }, @@ -3544,7 +4359,10 @@ "plasmid_name": "pENTR2-L3-SfoI-EGFP-secNanoLuc-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141025", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141025.addgene-full.gb" }, @@ -3553,7 +4371,10 @@ "plasmid_name": "pCS-flt4um159-HA", "sequence-type": "depositor-full", "addgene_id": "67704", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "file": "data/addgene_plasmids/67704.depositor-full.gb" }, @@ -3562,7 +4383,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP9", "sequence-type": "addgene-full", "addgene_id": "158360", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158360.addgene-full.gb" }, @@ -3571,7 +4395,6 @@ "plasmid_name": "R777-E203 Hs.PRKAG3", "sequence-type": "depositor-full", "addgene_id": "70487", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -3583,7 +4406,10 @@ "plasmid_name": "pAG413GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14334", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -3595,7 +4421,10 @@ "plasmid_name": "pBRC_double_attB_GFP_donor", "sequence-type": "addgene-full", "addgene_id": "169692", - "references": [], + "references": [ + "https://doi.org/10.1093/genetics/iyab206", + "https://www.ncbi.nlm.nih.gov/pubmed/34791215" + ], "kit": null, "file": "data/addgene_plasmids/169692.addgene-full.gb" }, @@ -3604,7 +4433,10 @@ "plasmid_name": "pBABEpuro-ARAF_D429A", "sequence-type": "depositor-full", "addgene_id": "51080", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI72763", + "https://www.ncbi.nlm.nih.gov/pubmed/24569458" + ], "kit": null, "file": "data/addgene_plasmids/51080.depositor-full.gb" }, @@ -3613,7 +4445,10 @@ "plasmid_name": "pMF-FU_TetO_GW_PPARG2", "sequence-type": "addgene-full", "addgene_id": "193289", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abn7298", + "https://www.ncbi.nlm.nih.gov/pubmed/35714187" + ], "kit": null, "file": "data/addgene_plasmids/193289.addgene-full.gb" }, @@ -3622,7 +4457,10 @@ "plasmid_name": "pLenti CRISPR V2 sgShmt2_2", "sequence-type": "addgene-full", "addgene_id": "106315", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106315.addgene-full.gb" }, @@ -3631,7 +4469,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Fn", "sequence-type": "addgene-full", "addgene_id": "108864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "file": "data/addgene_plasmids/108864.addgene-full.gb" }, @@ -3640,7 +4481,10 @@ "plasmid_name": "pDONR223_POT1_p.L265H", "sequence-type": "addgene-full", "addgene_id": "81559", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -3652,7 +4496,10 @@ "plasmid_name": "pEN_TT BirA* w ccdB", "sequence-type": "addgene-full", "addgene_id": "192310", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192310.addgene-full.gb" }, @@ -3661,7 +4508,10 @@ "plasmid_name": "pDONR221_SLC1A7", "sequence-type": "addgene-full", "addgene_id": "131998", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131998.addgene-full.gb" }, @@ -3670,7 +4520,10 @@ "plasmid_name": "pCZGY2254", "sequence-type": "addgene-full", "addgene_id": "101247", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26376", + "https://www.ncbi.nlm.nih.gov/pubmed/28767038" + ], "kit": null, "file": "data/addgene_plasmids/101247.addgene-full.gb" }, @@ -3679,7 +4532,10 @@ "plasmid_name": "actc1b-mKate2-rab5ab", "sequence-type": "addgene-full", "addgene_id": "109649", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109649.addgene-full.gb" }, @@ -3688,7 +4544,10 @@ "plasmid_name": "pENTR-ZmIAA14", "sequence-type": "addgene-full", "addgene_id": "188436", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188436.addgene-full.gb" }, @@ -3697,7 +4556,10 @@ "plasmid_name": "TFORF3525", "sequence-type": "depositor-full", "addgene_id": "145001", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145001.depositor-full.gb" }, @@ -3706,7 +4568,10 @@ "plasmid_name": "pinducer 20 DN-KASH", "sequence-type": "addgene-full", "addgene_id": "125554", - "references": [], + "references": [ + "https://doi.org/10.1007/s12195-019-00579-y", + "https://www.ncbi.nlm.nih.gov/pubmed/31719915" + ], "kit": null, "file": "data/addgene_plasmids/125554.addgene-full.gb" }, @@ -3715,7 +4580,10 @@ "plasmid_name": "pDONR221_SLC22A4", "sequence-type": "addgene-full", "addgene_id": "131903", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131903.addgene-full.gb" }, @@ -3724,7 +4592,10 @@ "plasmid_name": "TFORF3366", "sequence-type": "addgene-full", "addgene_id": "144842", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144842.addgene-full.gb" }, @@ -3733,7 +4604,10 @@ "plasmid_name": "pEBTetBl-CLIP-CP110", "sequence-type": "addgene-full", "addgene_id": "136851", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136851.addgene-full.gb" }, @@ -3742,7 +4616,10 @@ "plasmid_name": "pDONR223_SLC46A1_p.W299S", "sequence-type": "addgene-full", "addgene_id": "81622", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -3754,7 +4631,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-mir-2a-1", "sequence-type": "depositor-full", "addgene_id": "46664", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46664.depositor-full.gb" }, @@ -3763,7 +4643,10 @@ "plasmid_name": "pDONR221-SLC25A37_STOP", "sequence-type": "addgene-full", "addgene_id": "161207", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161207.addgene-full.gb" }, @@ -3772,7 +4655,10 @@ "plasmid_name": "pDONR-U6gRNA-PGKpuro2ABFP", "sequence-type": "addgene-full", "addgene_id": "136405", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03731-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29654229" + ], "kit": null, "file": "data/addgene_plasmids/136405.addgene-full.gb" }, @@ -3781,7 +4667,9 @@ "plasmid_name": "p5E lexOP-c-fos min pro (JDW 1254)", "sequence-type": "addgene-full", "addgene_id": "224477", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224477.addgene-full.gb" }, @@ -3790,7 +4678,6 @@ "plasmid_name": "pDEST-Spe4-Rfa-mCherry-stop", "sequence-type": "addgene-full", "addgene_id": "186388", - "references": [], "kit": null, "file": "data/addgene_plasmids/186388.addgene-full.gb" }, @@ -3799,7 +4686,10 @@ "plasmid_name": "actc1b-mKate2-CDC42-DN", "sequence-type": "addgene-full", "addgene_id": "109532", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109532.addgene-full.gb" }, @@ -3808,7 +4698,10 @@ "plasmid_name": "TFORF2940", "sequence-type": "addgene-full", "addgene_id": "144416", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144416.addgene-full.gb" }, @@ -3817,7 +4710,10 @@ "plasmid_name": "pENTR223-BcLF1", "sequence-type": "addgene-full", "addgene_id": "198581", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198581.addgene-full.gb" }, @@ -3826,7 +4722,10 @@ "plasmid_name": "pDONR221-SLC27A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161033", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161033.addgene-full.gb" }, @@ -3835,7 +4734,10 @@ "plasmid_name": "pDONR223_AKT1_p.R370C", "sequence-type": "addgene-full", "addgene_id": "81416", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -3847,7 +4749,10 @@ "plasmid_name": "pEPYCeGM0010", "sequence-type": "addgene-full", "addgene_id": "196144", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196144.addgene-full.gb" }, @@ -3856,7 +4761,10 @@ "plasmid_name": "p3E-rab3da", "sequence-type": "addgene-full", "addgene_id": "109706", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109706.addgene-full.gb" }, @@ -3865,7 +4773,10 @@ "plasmid_name": "pBA cMYC-AIP2", "sequence-type": "addgene-full", "addgene_id": "118667", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118667.addgene-full.gb" }, @@ -3874,7 +4785,10 @@ "plasmid_name": "pGWB520", "sequence-type": "depositor-full", "addgene_id": "74862", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74862.depositor-full.gb" }, @@ -3883,7 +4797,9 @@ "plasmid_name": "pDONR221-DDX39A", "sequence-type": "addgene-full", "addgene_id": "166161", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166161.addgene-full.gb" }, @@ -3892,7 +4808,10 @@ "plasmid_name": "pHAGE-BRAF-E695K", "sequence-type": "addgene-full", "addgene_id": "116142", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116142.addgene-full.gb" }, @@ -3901,7 +4820,10 @@ "plasmid_name": "pAWH-Rluc-let-7-Poly(A)", "sequence-type": "depositor-full", "addgene_id": "50556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.09.024", + "https://www.ncbi.nlm.nih.gov/pubmed/23123195" + ], "kit": null, "file": "data/addgene_plasmids/50556.depositor-full.gb" }, @@ -3910,7 +4832,10 @@ "plasmid_name": "pME VIVIT NS", "sequence-type": "addgene-full", "addgene_id": "188699", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111817", + "https://www.ncbi.nlm.nih.gov/pubmed/36516756" + ], "kit": null, "file": "data/addgene_plasmids/188699.addgene-full.gb" }, @@ -3919,7 +4844,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SOD1", "sequence-type": "addgene-full", "addgene_id": "222568", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222568.addgene-full.gb" }, @@ -3928,7 +4855,6 @@ "plasmid_name": "pCWXPGR-pTF-BDNF", "sequence-type": "addgene-full", "addgene_id": "114292", - "references": [], "kit": null, "file": "data/addgene_plasmids/114292.addgene-full.gb" }, @@ -3937,7 +4863,10 @@ "plasmid_name": "pYPQ282 (TsCas12a)", "sequence-type": "addgene-full", "addgene_id": "138114", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138114.addgene-full.gb" }, @@ -3946,7 +4875,6 @@ "plasmid_name": "p5E-elavl3", "sequence-type": "depositor-full", "addgene_id": "72640", - "references": [], "kit": null, "file": "data/addgene_plasmids/72640.depositor-full.gb" }, @@ -3955,7 +4883,10 @@ "plasmid_name": "pDONR221-kcnk7", "sequence-type": "addgene-full", "addgene_id": "208991", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208991.addgene-full.gb" }, @@ -3964,7 +4895,10 @@ "plasmid_name": "pDONR223_C1orf150_WT", "sequence-type": "addgene-full", "addgene_id": "81842", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -3976,7 +4910,9 @@ "plasmid_name": "pLenti Dest BlastR R1-R2", "sequence-type": "addgene-full", "addgene_id": "84574", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "file": "data/addgene_plasmids/84574.addgene-full.gb" }, @@ -3985,7 +4921,10 @@ "plasmid_name": "pENTR4-FLAG (w210-2)", "sequence-type": "addgene-full", "addgene_id": "17423", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17423.addgene-full.gb" }, @@ -3994,7 +4933,6 @@ "plasmid_name": "R777-E069 Hs.EXOC2", "sequence-type": "depositor-full", "addgene_id": "70353", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -4018,7 +4956,9 @@ "plasmid_name": "pDONR221-Lifeact- mScarlet-HA (JDW 1247)", "sequence-type": "addgene-full", "addgene_id": "224538", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224538.addgene-full.gb" }, @@ -4027,7 +4967,10 @@ "plasmid_name": "pDONR221-SLC5A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161348", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161348.addgene-full.gb" }, @@ -4036,7 +4979,10 @@ "plasmid_name": "AAEL012920 AstC R", "sequence-type": "addgene-full", "addgene_id": "115390", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115390.addgene-full.gb" }, @@ -4045,7 +4991,6 @@ "plasmid_name": "R777-E350 Hs.TIAM2-nostop", "sequence-type": "depositor-full", "addgene_id": "70634", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -4057,7 +5002,10 @@ "plasmid_name": "TFORF3083", "sequence-type": "addgene-full", "addgene_id": "144559", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144559.addgene-full.gb" }, @@ -4066,7 +5014,10 @@ "plasmid_name": "PB-Tal1", "sequence-type": "depositor-full", "addgene_id": "60670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "file": "data/addgene_plasmids/60670.depositor-full.gb" }, @@ -4075,7 +5026,10 @@ "plasmid_name": "pAG306GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14187", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -4087,7 +5041,10 @@ "plasmid_name": "pDONR221-RHCG_STOP", "sequence-type": "depositor-full", "addgene_id": "161061", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161061.depositor-full.gb" }, @@ -4096,7 +5053,10 @@ "plasmid_name": "pHAGE-EGFR-E709_T710delinsD", "sequence-type": "addgene-full", "addgene_id": "116239", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116239.addgene-full.gb" }, @@ -4105,7 +5065,10 @@ "plasmid_name": "pDONR223_NOSIP_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82970", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82970.addgene-full.gb" }, @@ -4114,7 +5077,10 @@ "plasmid_name": "IH201: pMVP (L5-L4) 3x HA epitope tag", "sequence-type": "addgene-full", "addgene_id": "121700", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121700.addgene-full.gb" }, @@ -4123,7 +5089,10 @@ "plasmid_name": "pVTU-Dest", "sequence-type": "addgene-full", "addgene_id": "105088", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-59745-289-2_14", + "https://www.ncbi.nlm.nih.gov/pubmed/19083185" + ], "kit": null, "file": "data/addgene_plasmids/105088.addgene-full.gb" }, @@ -4132,7 +5101,10 @@ "plasmid_name": "actc1b-mKate2-rab11a", "sequence-type": "addgene-full", "addgene_id": "109594", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109594.addgene-full.gb" }, @@ -4141,7 +5113,10 @@ "plasmid_name": "pDONR223 HCoV-229E NSP9_nostop", "sequence-type": "addgene-full", "addgene_id": "168736", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168736.addgene-full.gb" }, @@ -4150,7 +5125,6 @@ "plasmid_name": "R777-E279 Hs.RHOB", "sequence-type": "depositor-full", "addgene_id": "70563", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -4162,7 +5136,10 @@ "plasmid_name": "hSyn-GW-dCas9-SET2-IRES2-mCherry", "sequence-type": "addgene-full", "addgene_id": "202089", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2021.08.008", + "https://www.ncbi.nlm.nih.gov/pubmed/34480866" + ], "kit": null, "file": "data/addgene_plasmids/202089.addgene-full.gb" }, @@ -4171,7 +5148,10 @@ "plasmid_name": "pACT2-Dhr1", "sequence-type": "addgene-full", "addgene_id": "100003", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/100003.addgene-full.gb" }, @@ -4180,7 +5160,10 @@ "plasmid_name": "5'-3xFLAG Mta1-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212071", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212071.addgene-full.gb" }, @@ -4189,7 +5172,10 @@ "plasmid_name": "pDONR223_BRAF_p.L597Q", "sequence-type": "addgene-full", "addgene_id": "81684", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -4201,7 +5187,10 @@ "plasmid_name": "pDONR223_KIF2B_p.E211K", "sequence-type": "addgene-full", "addgene_id": "81564", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -4213,7 +5202,10 @@ "plasmid_name": "pYPQ239", "sequence-type": "addgene-full", "addgene_id": "108859", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "file": "data/addgene_plasmids/108859.addgene-full.gb" }, @@ -4222,7 +5214,10 @@ "plasmid_name": "pDONR221-SLC22A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161141", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161141.addgene-full.gb" }, @@ -4231,7 +5226,10 @@ "plasmid_name": "pDONR223_ABCB9_WT", "sequence-type": "addgene-full", "addgene_id": "82899", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82899.addgene-full.gb" }, @@ -4240,7 +5238,10 @@ "plasmid_name": "R619-M88-303: CMV51p> MERS-CoV S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166013", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/166013.addgene-full.gb" }, @@ -4249,7 +5250,10 @@ "plasmid_name": "TFORF3274", "sequence-type": "addgene-full", "addgene_id": "144750", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144750.addgene-full.gb" }, @@ -4258,7 +5262,10 @@ "plasmid_name": "p3E-rab1ab", "sequence-type": "addgene-full", "addgene_id": "109674", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109674.addgene-full.gb" }, @@ -4267,7 +5274,6 @@ "plasmid_name": "pENTR_AtU6p_BsaI_gRNA", "sequence-type": "addgene-full", "addgene_id": "225987", - "references": [], "kit": null, "file": "data/addgene_plasmids/225987.addgene-full.gb" }, @@ -4276,7 +5282,6 @@ "plasmid_name": "pENTRY4_ Dja6_1", "sequence-type": "addgene-full", "addgene_id": "126894", - "references": [], "kit": null, "file": "data/addgene_plasmids/126894.addgene-full.gb" }, @@ -4285,7 +5290,10 @@ "plasmid_name": "pDONR223-ZNF786", "sequence-type": "addgene-full", "addgene_id": "88068", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88068.addgene-full.gb" }, @@ -4294,7 +5302,6 @@ "plasmid_name": "pGP5G-ccdB", "sequence-type": "depositor-full", "addgene_id": "83879", - "references": [], "kit": null, "file": "data/addgene_plasmids/83879.depositor-full.gb" }, @@ -4303,7 +5310,10 @@ "plasmid_name": "pDONR223_TPK1_p.E81Q", "sequence-type": "addgene-full", "addgene_id": "82802", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82802.addgene-full.gb" }, @@ -4312,7 +5322,10 @@ "plasmid_name": "RPS18_pLX307", "sequence-type": "addgene-full", "addgene_id": "98370", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98370.addgene-full.gb" }, @@ -4321,7 +5334,10 @@ "plasmid_name": "pDONR221 CARD8 PAM R394E", "sequence-type": "addgene-full", "addgene_id": "169980", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169980.addgene-full.gb" }, @@ -4330,7 +5346,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp14", "sequence-type": "depositor-full", "addgene_id": "168824", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168824.depositor-full.gb" }, @@ -4339,7 +5358,10 @@ "plasmid_name": "pMDC-pRPS2-HPB", "sequence-type": "depositor-full", "addgene_id": "32077", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2008.03736.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19000159" + ], "kit": null, "file": "data/addgene_plasmids/32077.depositor-full.gb" }, @@ -4348,7 +5370,10 @@ "plasmid_name": "ATX3-77Q-R388G", "sequence-type": "addgene-full", "addgene_id": "184251", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "file": "data/addgene_plasmids/184251.addgene-full.gb" }, @@ -4357,7 +5382,10 @@ "plasmid_name": "JJ802: pMAGIC (L1-R5) hU6::SaCas9 gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121812", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121812.addgene-full.gb" }, @@ -4366,7 +5394,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_M", "sequence-type": "addgene-full", "addgene_id": "169400", - "references": [], "kit": null, "file": "data/addgene_plasmids/169400.addgene-full.gb" }, @@ -4375,7 +5402,10 @@ "plasmid_name": "pDEST53-LRRK2-G2019S", "sequence-type": "addgene-full", "addgene_id": "25045", - "references": [], + "references": [ + "https://doi.org/10.1016/j.nbd.2006.04.001", + "https://www.ncbi.nlm.nih.gov/pubmed/16750377" + ], "kit": null, "file": "data/addgene_plasmids/25045.addgene-full.gb" }, @@ -4384,7 +5414,10 @@ "plasmid_name": "pYPQ230-RV", "sequence-type": "addgene-full", "addgene_id": "188544", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02929-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37122009" + ], "kit": null, "file": "data/addgene_plasmids/188544.addgene-full.gb" }, @@ -4393,7 +5426,10 @@ "plasmid_name": "pGCS1", "sequence-type": "addgene-full", "addgene_id": "85730", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -4405,7 +5441,6 @@ "plasmid_name": "pLenti-EF1a-Luciferase-IRES-Blast-WPRE", "sequence-type": "addgene-full", "addgene_id": "108542", - "references": [], "kit": null, "file": "data/addgene_plasmids/108542.addgene-full.gb" }, @@ -4414,7 +5449,10 @@ "plasmid_name": "pDONR221-SLCO1B7_STOP", "sequence-type": "depositor-full", "addgene_id": "161378", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161378.depositor-full.gb" }, @@ -4423,7 +5461,10 @@ "plasmid_name": "A1-LCD-4R-2K+5D", "sequence-type": "addgene-full", "addgene_id": "178681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178681.addgene-full.gb" }, @@ -4432,7 +5473,9 @@ "plasmid_name": "pPB-cT3G-cERP2-KDM5B", "sequence-type": "addgene-full", "addgene_id": "222555", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222555.addgene-full.gb" }, @@ -4441,7 +5484,6 @@ "plasmid_name": "p667-UBC-AKT1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189889", - "references": [], "kit": null, "file": "data/addgene_plasmids/189889.addgene-full.gb" }, @@ -4450,7 +5492,9 @@ "plasmid_name": "pME-LexA-mODC-LexOP-35SCaMV (JDW 1348)", "sequence-type": "addgene-full", "addgene_id": "224505", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224505.addgene-full.gb" }, @@ -4459,7 +5503,10 @@ "plasmid_name": "pDONR221-SLC7A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161375", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161375.addgene-full.gb" }, @@ -4468,7 +5515,10 @@ "plasmid_name": "pDONR223_CD79B_WT", "sequence-type": "addgene-full", "addgene_id": "81750", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -4492,7 +5542,10 @@ "plasmid_name": "pGLTR-X-GFP", "sequence-type": "depositor-full", "addgene_id": "58245", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "file": "data/addgene_plasmids/58245.depositor-full.gb" }, @@ -4501,7 +5554,10 @@ "plasmid_name": "592 p3e-EST etv2 3\u2019UTR", "sequence-type": "depositor-full", "addgene_id": "49003", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49003.depositor-full.gb" }, @@ -4510,7 +5566,10 @@ "plasmid_name": "pDONR223-ZNF99", "sequence-type": "addgene-full", "addgene_id": "88127", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88127.addgene-full.gb" }, @@ -4519,7 +5578,10 @@ "plasmid_name": "TFORF3454", "sequence-type": "addgene-full", "addgene_id": "144930", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144930.addgene-full.gb" }, @@ -4528,7 +5590,10 @@ "plasmid_name": "PRPF40A", "sequence-type": "addgene-full", "addgene_id": "155851", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155851.addgene-full.gb" }, @@ -4537,7 +5602,10 @@ "plasmid_name": "pHAGE-BRAF-V600E", "sequence-type": "addgene-full", "addgene_id": "116204", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116204.addgene-full.gb" }, @@ -4546,7 +5614,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CAMKK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158169", - "references": [], "kit": null, "file": "data/addgene_plasmids/158169.addgene-full.gb" }, @@ -4555,7 +5622,10 @@ "plasmid_name": "pDEST-IRES-puro-polyA", "sequence-type": "depositor-full", "addgene_id": "43967", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "file": "data/addgene_plasmids/43967.depositor-full.gb" }, @@ -4564,7 +5634,10 @@ "plasmid_name": "pDONR221_RHAG", "sequence-type": "addgene-full", "addgene_id": "131871", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131871.addgene-full.gb" }, @@ -4573,7 +5646,10 @@ "plasmid_name": "TFORF3208", "sequence-type": "addgene-full", "addgene_id": "144684", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144684.addgene-full.gb" }, @@ -4582,7 +5658,10 @@ "plasmid_name": "pLX307_CdTag-HA_EmptyVector", "sequence-type": "addgene-full", "addgene_id": "221467", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221467.addgene-full.gb" }, @@ -4591,7 +5670,10 @@ "plasmid_name": "pDONR221-MFSD4B_STOP", "sequence-type": "addgene-full", "addgene_id": "161095", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161095.addgene-full.gb" }, @@ -4600,7 +5682,10 @@ "plasmid_name": "TFORF3064", "sequence-type": "addgene-full", "addgene_id": "144540", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144540.addgene-full.gb" }, @@ -4609,7 +5694,9 @@ "plasmid_name": "pDONR221-RPL30", "sequence-type": "addgene-full", "addgene_id": "166203", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166203.addgene-full.gb" }, @@ -4618,7 +5705,10 @@ "plasmid_name": "AAEL011325 AKH R", "sequence-type": "addgene-full", "addgene_id": "115389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115389.addgene-full.gb" }, @@ -4627,7 +5717,10 @@ "plasmid_name": "pDONR221-SLC7A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161351", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161351.addgene-full.gb" }, @@ -4636,7 +5729,9 @@ "plasmid_name": "pME-lox-3xSTOP-lox (JDW 869)", "sequence-type": "addgene-full", "addgene_id": "224521", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224521.addgene-full.gb" }, @@ -4645,7 +5740,10 @@ "plasmid_name": "pMMK ENTR 3", "sequence-type": "addgene-full", "addgene_id": "206262", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206262.addgene-full.gb" }, @@ -4654,7 +5752,6 @@ "plasmid_name": "R777-E017 Hs.CCND1", "sequence-type": "depositor-full", "addgene_id": "70301", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -4678,7 +5775,10 @@ "plasmid_name": "pDONR223_ATPIF1_WT", "sequence-type": "addgene-full", "addgene_id": "81774", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -4690,7 +5790,10 @@ "plasmid_name": "KK802: pMVP (L5-L4) Zeo-P2A", "sequence-type": "addgene-full", "addgene_id": "121719", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121719.addgene-full.gb" }, @@ -4699,7 +5802,10 @@ "plasmid_name": "pDONR223_FBXW7_p.A502V", "sequence-type": "addgene-full", "addgene_id": "81494", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -4711,7 +5817,10 @@ "plasmid_name": "pME-secAnxaV-NS", "sequence-type": "depositor-full", "addgene_id": "67718", - "references": [], + "references": [ + "https://doi.org/10.3389/fncel.2015.00321", + "https://www.ncbi.nlm.nih.gov/pubmed/26379496" + ], "kit": null, "file": "data/addgene_plasmids/67718.depositor-full.gb" }, @@ -4720,7 +5829,10 @@ "plasmid_name": "pDONR223_PWP1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82969", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82969.addgene-full.gb" }, @@ -4729,7 +5841,10 @@ "plasmid_name": "pHAGE-CDKN2A-A68T", "sequence-type": "addgene-full", "addgene_id": "116220", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116220.addgene-full.gb" }, @@ -4738,7 +5853,10 @@ "plasmid_name": "TFORF3438", "sequence-type": "addgene-full", "addgene_id": "144914", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144914.addgene-full.gb" }, @@ -4747,7 +5865,10 @@ "plasmid_name": "pGWB444", "sequence-type": "depositor-full", "addgene_id": "74830", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74830.depositor-full.gb" }, @@ -4756,7 +5877,10 @@ "plasmid_name": "pAG304GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14328", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -4768,7 +5892,9 @@ "plasmid_name": "pDONR221-HBE1", "sequence-type": "addgene-full", "addgene_id": "166178", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166178.addgene-full.gb" }, @@ -4777,7 +5903,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-142", "sequence-type": "depositor-full", "addgene_id": "46678", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46678.depositor-full.gb" }, @@ -4786,7 +5915,10 @@ "plasmid_name": "KZ201: pMVP (L3-L2) P2A-Hygro + polyA", "sequence-type": "addgene-full", "addgene_id": "121782", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121782.addgene-full.gb" }, @@ -4795,7 +5927,10 @@ "plasmid_name": "KL001: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS-VPR", "sequence-type": "addgene-full", "addgene_id": "121836", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121836.addgene-full.gb" }, @@ -4804,7 +5939,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SOX17", "sequence-type": "addgene-full", "addgene_id": "222925", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "file": "data/addgene_plasmids/222925.addgene-full.gb" }, @@ -4813,7 +5950,10 @@ "plasmid_name": "pHDT2:HDT2-GFP", "sequence-type": "addgene-full", "addgene_id": "108566", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "file": "data/addgene_plasmids/108566.addgene-full.gb" }, @@ -4822,7 +5962,9 @@ "plasmid_name": "pPB-cT3G-cERP2-DMRT1", "sequence-type": "addgene-full", "addgene_id": "222571", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222571.addgene-full.gb" }, @@ -4831,7 +5973,10 @@ "plasmid_name": "pEBTetBl-CLIP-\u03b3-tubulin", "sequence-type": "addgene-full", "addgene_id": "136848", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136848.addgene-full.gb" }, @@ -4840,7 +5985,10 @@ "plasmid_name": "pDONR223_DCAF8_p.G588C", "sequence-type": "addgene-full", "addgene_id": "82792", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82792.addgene-full.gb" }, @@ -4849,7 +5997,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.I140T", "sequence-type": "addgene-full", "addgene_id": "82826", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82826.addgene-full.gb" }, @@ -4858,7 +6009,10 @@ "plasmid_name": "pGWB405", "sequence-type": "depositor-full", "addgene_id": "74799", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74799.depositor-full.gb" }, @@ -4867,7 +6021,10 @@ "plasmid_name": "pcDNA3_SP-DRD1-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194359", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194359.addgene-full.gb" }, @@ -4876,7 +6033,10 @@ "plasmid_name": "pYPQ147", "sequence-type": "depositor-full", "addgene_id": "69299", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69299.depositor-full.gb" }, @@ -4885,7 +6045,10 @@ "plasmid_name": "pLenti_EF1a_Flag_TP53_P278A", "sequence-type": "addgene-full", "addgene_id": "183113", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "file": "data/addgene_plasmids/183113.addgene-full.gb" }, @@ -4894,7 +6057,9 @@ "plasmid_name": "pMpGWB436", "sequence-type": "depositor-full", "addgene_id": "68701", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68701.depositor-full.gb" }, @@ -4903,7 +6068,10 @@ "plasmid_name": "pGGEV_5'_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49306", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -4915,7 +6083,6 @@ "plasmid_name": "pDEST-Spe4-RfA-miRFP713-stop", "sequence-type": "addgene-full", "addgene_id": "186391", - "references": [], "kit": null, "file": "data/addgene_plasmids/186391.addgene-full.gb" }, @@ -4924,7 +6091,10 @@ "plasmid_name": "pQYD", "sequence-type": "depositor-full", "addgene_id": "48104", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.02296-13", + "https://www.ncbi.nlm.nih.gov/pubmed/23995928" + ], "kit": null, "file": "data/addgene_plasmids/48104.depositor-full.gb" }, @@ -4933,7 +6103,10 @@ "plasmid_name": "pAG423GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14366", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -4945,7 +6118,10 @@ "plasmid_name": "MTCH2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98354", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98354.addgene-full.gb" }, @@ -4954,7 +6130,10 @@ "plasmid_name": "5'-3xFLAG Kdm1a+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212055", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212055.addgene-full.gb" }, @@ -4963,7 +6142,10 @@ "plasmid_name": "pDONR221-SLC37A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161285", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161285.addgene-full.gb" }, @@ -4972,7 +6154,10 @@ "plasmid_name": "LIIbeta R 3-4", "sequence-type": "depositor-full", "addgene_id": "54361", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54361.depositor-full.gb" }, @@ -4981,7 +6166,10 @@ "plasmid_name": "TFORF3018", "sequence-type": "addgene-full", "addgene_id": "144494", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144494.addgene-full.gb" }, @@ -4990,7 +6178,10 @@ "plasmid_name": "pDONR223-ZNF670", "sequence-type": "addgene-full", "addgene_id": "88337", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88337.addgene-full.gb" }, @@ -4999,7 +6190,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST CDC42EP1 WT", "sequence-type": "depositor-full", "addgene_id": "69819", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "file": "data/addgene_plasmids/69819.depositor-full.gb" }, @@ -5008,7 +6202,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf9c", "sequence-type": "addgene-full", "addgene_id": "158379", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158379.addgene-full.gb" }, @@ -5017,7 +6214,6 @@ "plasmid_name": "pREP82xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79020", - "references": [], "kit": null, "file": "data/addgene_plasmids/79020.depositor-full.gb" }, @@ -5026,7 +6222,10 @@ "plasmid_name": "actc1b-mKate2-rab5b", "sequence-type": "addgene-full", "addgene_id": "109650", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109650.addgene-full.gb" }, @@ -5035,7 +6234,10 @@ "plasmid_name": "TFORF3298", "sequence-type": "addgene-full", "addgene_id": "144774", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144774.addgene-full.gb" }, @@ -5044,7 +6246,10 @@ "plasmid_name": "pEN_TT BirA*", "sequence-type": "addgene-full", "addgene_id": "192309", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192309.addgene-full.gb" }, @@ -5053,7 +6258,10 @@ "plasmid_name": "pDONR221_SLC25A32", "sequence-type": "addgene-full", "addgene_id": "131981", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131981.addgene-full.gb" }, @@ -5062,7 +6270,6 @@ "plasmid_name": "R777-E344 Hs.TFDP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70628", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -5074,7 +6281,10 @@ "plasmid_name": "pDONR223_SV2C_p.M727I", "sequence-type": "addgene-full", "addgene_id": "81540", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -5086,7 +6296,10 @@ "plasmid_name": "pDONR221-SLC22A14_STOP", "sequence-type": "addgene-full", "addgene_id": "161165", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161165.addgene-full.gb" }, @@ -5095,7 +6308,10 @@ "plasmid_name": "pCZGY2162", "sequence-type": "addgene-full", "addgene_id": "110136", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.08.002", + "https://www.ncbi.nlm.nih.gov/pubmed/25313960" + ], "kit": null, "file": "data/addgene_plasmids/110136.addgene-full.gb" }, @@ -5104,7 +6320,10 @@ "plasmid_name": "pDONR221-WT-short-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192100", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/192100.addgene-full.gb" }, @@ -5113,7 +6332,10 @@ "plasmid_name": "pMM2_12", "sequence-type": "addgene-full", "addgene_id": "183061", - "references": [], + "references": [ + "https://doi.org/10.1093/femsyr/foab049", + "https://www.ncbi.nlm.nih.gov/pubmed/34477863" + ], "kit": null, "file": "data/addgene_plasmids/183061.addgene-full.gb" }, @@ -5122,7 +6344,10 @@ "plasmid_name": "pDONR223_RAC1_WT", "sequence-type": "addgene-full", "addgene_id": "81749", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -5134,7 +6359,10 @@ "plasmid_name": "pFRT_TO_eGFP_ELAVL1", "sequence-type": "addgene-full", "addgene_id": "106105", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106105.addgene-full.gb" }, @@ -5143,7 +6371,10 @@ "plasmid_name": "pFRT-TODestFLAGHAhFMRPiso1", "sequence-type": "addgene-full", "addgene_id": "48690", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11737", + "https://www.ncbi.nlm.nih.gov/pubmed/23235829" + ], "kit": null, "file": "data/addgene_plasmids/48690.addgene-full.gb" }, @@ -5152,7 +6383,9 @@ "plasmid_name": "nTALECD for_PKT3 exon12_1397NC", "sequence-type": "addgene-full", "addgene_id": "193379", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "file": "data/addgene_plasmids/193379.addgene-full.gb" }, @@ -5161,7 +6394,10 @@ "plasmid_name": "pDONR223_PSMG1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82954", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82954.addgene-full.gb" }, @@ -5170,7 +6406,10 @@ "plasmid_name": "IO901: pMVP (L5-L4) BioID2", "sequence-type": "addgene-full", "addgene_id": "121724", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121724.addgene-full.gb" }, @@ -5179,7 +6418,6 @@ "plasmid_name": "pLV-SspB-HaloTag-TRIO-DHPH1", "sequence-type": "addgene-full", "addgene_id": "176126", - "references": [], "kit": null, "file": "data/addgene_plasmids/176126.addgene-full.gb" }, @@ -5188,7 +6426,10 @@ "plasmid_name": "pDONR221_CLN3", "sequence-type": "addgene-full", "addgene_id": "131868", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131868.addgene-full.gb" }, @@ -5197,7 +6438,10 @@ "plasmid_name": "PRPF3", "sequence-type": "addgene-full", "addgene_id": "155848", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155848.addgene-full.gb" }, @@ -5206,7 +6450,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CAMKV_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158170", - "references": [], "kit": null, "file": "data/addgene_plasmids/158170.addgene-full.gb" }, @@ -5215,7 +6458,10 @@ "plasmid_name": "TFORF3453", "sequence-type": "addgene-full", "addgene_id": "144929", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144929.addgene-full.gb" }, @@ -5224,7 +6470,10 @@ "plasmid_name": "pAC1810_pmax-FRB-RBM38", "sequence-type": "addgene-full", "addgene_id": "118643", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118643.addgene-full.gb" }, @@ -5233,7 +6482,10 @@ "plasmid_name": "TFORF3130", "sequence-type": "addgene-full", "addgene_id": "144606", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144606.addgene-full.gb" }, @@ -5242,7 +6494,10 @@ "plasmid_name": "pGCS-C6(eGFP)", "sequence-type": "addgene-full", "addgene_id": "85729", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -5254,7 +6509,10 @@ "plasmid_name": "p3E-rab6bb", "sequence-type": "addgene-full", "addgene_id": "109722", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109722.addgene-full.gb" }, @@ -5263,7 +6521,9 @@ "plasmid_name": "pDEST17-His10-ccdB", "sequence-type": "addgene-full", "addgene_id": "166145", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166145.addgene-full.gb" }, @@ -5272,7 +6532,10 @@ "plasmid_name": "pHAGE-EGFR-P699L", "sequence-type": "addgene-full", "addgene_id": "116286", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116286.addgene-full.gb" }, @@ -5281,7 +6544,10 @@ "plasmid_name": "AAV-EFS-GFP", "sequence-type": "addgene-full", "addgene_id": "170176", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2024.02.006", + "https://www.ncbi.nlm.nih.gov/pubmed/38518781" + ], "kit": null, "file": "data/addgene_plasmids/170176.addgene-full.gb" }, @@ -5290,7 +6556,10 @@ "plasmid_name": "ATX3-13Q", "sequence-type": "addgene-full", "addgene_id": "184248", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "file": "data/addgene_plasmids/184248.addgene-full.gb" }, @@ -5299,7 +6568,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp3", "sequence-type": "depositor-full", "addgene_id": "168838", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168838.depositor-full.gb" }, @@ -5308,7 +6580,10 @@ "plasmid_name": "pDONR223_IDH2_p.R172K", "sequence-type": "addgene-full", "addgene_id": "81432", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -5320,7 +6595,10 @@ "plasmid_name": "pDONR-IAA31_no stop", "sequence-type": "depositor-full", "addgene_id": "83865", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83865.depositor-full.gb" }, @@ -5329,7 +6607,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-AKT1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189890", - "references": [], "kit": null, "file": "data/addgene_plasmids/189890.addgene-full.gb" }, @@ -5338,7 +6615,10 @@ "plasmid_name": "p7129 pHAGE-P-CMVt-N-HA-GAW-HM13", "sequence-type": "addgene-full", "addgene_id": "100155", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100155.addgene-full.gb" }, @@ -5347,7 +6627,10 @@ "plasmid_name": "pDONR223_SPATA8_WT", "sequence-type": "addgene-full", "addgene_id": "81866", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -5359,7 +6642,10 @@ "plasmid_name": "pENTR{FRT}", "sequence-type": "addgene-full", "addgene_id": "182163", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182163.addgene-full.gb" }, @@ -5368,7 +6654,10 @@ "plasmid_name": "pME-H2B-mCerulean3", "sequence-type": "depositor-full", "addgene_id": "75156", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -5380,7 +6669,10 @@ "plasmid_name": "pHAGE-BRAF-K483E", "sequence-type": "addgene-full", "addgene_id": "116166", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116166.addgene-full.gb" }, @@ -5389,7 +6681,10 @@ "plasmid_name": "pDONR223-ZNF146", "sequence-type": "addgene-full", "addgene_id": "88245", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88245.addgene-full.gb" }, @@ -5398,7 +6693,10 @@ "plasmid_name": "CSTF3", "sequence-type": "addgene-full", "addgene_id": "155487", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155487.addgene-full.gb" }, @@ -5407,7 +6705,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep131", "sequence-type": "addgene-full", "addgene_id": "136875", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136875.addgene-full.gb" }, @@ -5416,7 +6717,10 @@ "plasmid_name": "pDONR221_SLC29A1", "sequence-type": "addgene-full", "addgene_id": "131927", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131927.addgene-full.gb" }, @@ -5425,7 +6729,6 @@ "plasmid_name": "plix403-V5-N-mEYFP", "sequence-type": "addgene-full", "addgene_id": "223955", - "references": [], "kit": null, "file": "data/addgene_plasmids/223955.addgene-full.gb" }, @@ -5434,7 +6737,6 @@ "plasmid_name": "pLenti6.3/NS4A-2K-NS4B", "sequence-type": "addgene-full", "addgene_id": "120846", - "references": [], "kit": null, "file": "data/addgene_plasmids/120846.addgene-full.gb" }, @@ -5443,7 +6745,10 @@ "plasmid_name": "pDONR221-SLC8B1_STOP", "sequence-type": "depositor-full", "addgene_id": "161364", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161364.depositor-full.gb" }, @@ -5452,7 +6757,10 @@ "plasmid_name": "TFORF3390", "sequence-type": "addgene-full", "addgene_id": "144866", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144866.addgene-full.gb" }, @@ -5461,7 +6769,10 @@ "plasmid_name": "pcDNA3_DRD2-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194364", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194364.addgene-full.gb" }, @@ -5470,7 +6781,9 @@ "plasmid_name": "pLV-TET2Puro-gal4DBD-miniVPR-HA", "sequence-type": "addgene-full", "addgene_id": "207169", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207169.addgene-full.gb" }, @@ -5479,7 +6792,10 @@ "plasmid_name": "pHAGE-ERBB2-T733I", "sequence-type": "addgene-full", "addgene_id": "116352", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116352.addgene-full.gb" }, @@ -5488,7 +6804,6 @@ "plasmid_name": "R777-E247 Hs.RASGRP3", "sequence-type": "depositor-full", "addgene_id": "70531", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -5500,7 +6815,10 @@ "plasmid_name": "pAG305GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14282", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -5512,7 +6830,10 @@ "plasmid_name": "pT2-5xERE:GFP", "sequence-type": "addgene-full", "addgene_id": "125690", - "references": [], + "references": [ + "https://doi.org/10.1210/en.2010-1257", + "https://www.ncbi.nlm.nih.gov/pubmed/21540282" + ], "kit": null, "file": "data/addgene_plasmids/125690.addgene-full.gb" }, @@ -5521,7 +6842,10 @@ "plasmid_name": "TFORF2956", "sequence-type": "addgene-full", "addgene_id": "144432", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144432.addgene-full.gb" }, @@ -5530,7 +6854,10 @@ "plasmid_name": "actc1b-mKate2-EHD2a", "sequence-type": "addgene-full", "addgene_id": "109516", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109516.addgene-full.gb" }, @@ -5539,7 +6866,10 @@ "plasmid_name": "pDONR223_RASA1_p.L146S", "sequence-type": "addgene-full", "addgene_id": "81606", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -5551,7 +6881,6 @@ "plasmid_name": "pDest-527", "sequence-type": "addgene-full", "addgene_id": "11518", - "references": [], "kit": null, "file": "data/addgene_plasmids/11518.addgene-full.gb" }, @@ -5560,7 +6889,10 @@ "plasmid_name": "pDONR221-SLC39A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161223", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161223.addgene-full.gb" }, @@ -5569,7 +6901,10 @@ "plasmid_name": "pDONR223_CBFB_WT", "sequence-type": "addgene-full", "addgene_id": "81929", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -5581,7 +6916,10 @@ "plasmid_name": "5'-3xFLAG Msl1-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212068", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212068.addgene-full.gb" }, @@ -5590,7 +6928,10 @@ "plasmid_name": "hSyn-GW-dCas9-SET2-R195G-C201A-IRES2-mCherry", "sequence-type": "addgene-full", "addgene_id": "202090", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2021.08.008", + "https://www.ncbi.nlm.nih.gov/pubmed/34480866" + ], "kit": null, "file": "data/addgene_plasmids/202090.addgene-full.gb" }, @@ -5599,7 +6940,10 @@ "plasmid_name": "TFORF3273", "sequence-type": "addgene-full", "addgene_id": "144749", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144749.addgene-full.gb" }, @@ -5608,7 +6952,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF7B C-trunc", "sequence-type": "addgene-full", "addgene_id": "153957", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153957.addgene-full.gb" }, @@ -5617,7 +6964,10 @@ "plasmid_name": "pSLIK BirA* 3xFLAG-CSE1L zeo", "sequence-type": "addgene-full", "addgene_id": "192334", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192334.addgene-full.gb" }, @@ -5626,7 +6976,10 @@ "plasmid_name": "pENTR223-PARK7H126A", "sequence-type": "addgene-full", "addgene_id": "115180", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115180.addgene-full.gb" }, @@ -5635,7 +6988,10 @@ "plasmid_name": "pDONR223_EGFR_p.769_770insASV", "sequence-type": "addgene-full", "addgene_id": "82880", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82880.addgene-full.gb" }, @@ -5644,7 +7000,10 @@ "plasmid_name": "pDONR221-ZNF516", "sequence-type": "depositor-full", "addgene_id": "101566", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101566.depositor-full.gb" }, @@ -5653,7 +7012,10 @@ "plasmid_name": "pDONR223_SERPINB5_p.I159S", "sequence-type": "addgene-full", "addgene_id": "82734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -5665,7 +7027,6 @@ "plasmid_name": "pUC-L3L2", "sequence-type": "addgene-full", "addgene_id": "114019", - "references": [], "kit": null, "file": "data/addgene_plasmids/114019.addgene-full.gb" }, @@ -5674,7 +7035,10 @@ "plasmid_name": "pDONR223_GPR141_p.Q224K", "sequence-type": "addgene-full", "addgene_id": "81357", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -5686,7 +7050,10 @@ "plasmid_name": "pLentiPGK Hygro DEST H2B-mRuby2", "sequence-type": "addgene-full", "addgene_id": "90236", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "file": "data/addgene_plasmids/90236.addgene-full.gb" }, @@ -5695,7 +7062,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK40_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170613", - "references": [], "kit": null, "file": "data/addgene_plasmids/170613.addgene-full.gb" }, @@ -5704,7 +7070,10 @@ "plasmid_name": "pcDNA5FRT/TO-DVC1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113481", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113481.addgene-full.gb" }, @@ -5713,7 +7082,10 @@ "plasmid_name": "223 pCS EGFP DEST", "sequence-type": "depositor-full", "addgene_id": "13071", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/13071.depositor-full.gb" }, @@ -5722,7 +7094,10 @@ "plasmid_name": "pHAGE-PIK3R1-R348*", "sequence-type": "addgene-full", "addgene_id": "116603", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116603.addgene-full.gb" }, @@ -5731,7 +7106,10 @@ "plasmid_name": "pcDNA3.1_nV5-AMOT (p130)", "sequence-type": "addgene-full", "addgene_id": "172997", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172997.addgene-full.gb" }, @@ -5740,7 +7118,10 @@ "plasmid_name": "pMuLE ENTR CMV tdTomato L5-L2", "sequence-type": "depositor-full", "addgene_id": "62152", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62152.depositor-full.gb" }, @@ -5749,7 +7130,10 @@ "plasmid_name": "pENTR223-BGLF1", "sequence-type": "addgene-full", "addgene_id": "195818", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195818.addgene-full.gb" }, @@ -5758,7 +7142,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 632-639D", "sequence-type": "addgene-full", "addgene_id": "175771", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175771.addgene-full.gb" }, @@ -5767,7 +7154,6 @@ "plasmid_name": "R777-E121 Hs.MAP2K1", "sequence-type": "depositor-full", "addgene_id": "70405", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -5779,7 +7165,10 @@ "plasmid_name": "pDONR221-SLC6A20_STOP", "sequence-type": "addgene-full", "addgene_id": "161409", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161409.addgene-full.gb" }, @@ -5788,7 +7177,10 @@ "plasmid_name": "pcDNA3_ERBB2-V5", "sequence-type": "addgene-full", "addgene_id": "214612", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214612.addgene-full.gb" }, @@ -5809,7 +7201,10 @@ "plasmid_name": "pCM5.35", "sequence-type": "depositor-full", "addgene_id": "19395", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19395.depositor-full.gb" }, @@ -5818,7 +7213,10 @@ "plasmid_name": "mpeg:lamp2-mCherry-stop; cmlc2:GFP", "sequence-type": "addgene-full", "addgene_id": "213740", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abp8321", + "https://www.ncbi.nlm.nih.gov/pubmed/36044568" + ], "kit": null, "file": "data/addgene_plasmids/213740.addgene-full.gb" }, @@ -5827,7 +7225,10 @@ "plasmid_name": "pHAGE-TGFB1-V367M", "sequence-type": "addgene-full", "addgene_id": "116698", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116698.addgene-full.gb" }, @@ -5836,7 +7237,10 @@ "plasmid_name": "pDONR221_SLC35D3", "sequence-type": "addgene-full", "addgene_id": "132110", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132110.addgene-full.gb" }, @@ -5845,7 +7249,10 @@ "plasmid_name": "pBullet-vac-c", "sequence-type": "depositor-full", "addgene_id": "53076", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53076.depositor-full.gb" }, @@ -5854,7 +7261,10 @@ "plasmid_name": "pDONR223 LC3A G120", "sequence-type": "addgene-full", "addgene_id": "123071", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123071.addgene-full.gb" }, @@ -5863,7 +7273,6 @@ "plasmid_name": "CTNNB1 - R673w in pENTR", "sequence-type": "addgene-full", "addgene_id": "216622", - "references": [], "kit": null, "file": "data/addgene_plasmids/216622.addgene-full.gb" }, @@ -5872,7 +7281,10 @@ "plasmid_name": "pHAGE-PIK3CG-E347K", "sequence-type": "addgene-full", "addgene_id": "116578", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116578.addgene-full.gb" }, @@ -5881,7 +7293,6 @@ "plasmid_name": "Hs.KRAS4b R73E", "sequence-type": "depositor-full", "addgene_id": "83162", - "references": [], "kit": null, "file": "data/addgene_plasmids/83162.depositor-full.gb" }, @@ -5890,7 +7301,10 @@ "plasmid_name": "Phage-PGK-Flag-HA-FKBP-T(WT)", "sequence-type": "addgene-full", "addgene_id": "181734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xcrm.2020.100188", + "https://www.ncbi.nlm.nih.gov/pubmed/33521702" + ], "kit": null, "file": "data/addgene_plasmids/181734.addgene-full.gb" }, @@ -5899,7 +7313,10 @@ "plasmid_name": "pCFJ1820 - pDEST[2-3](5605)[Psmu-1 | smu-1 genomic | ccdB Cm]", "sequence-type": "addgene-full", "addgene_id": "159838", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159838.addgene-full.gb" }, @@ -5908,7 +7325,10 @@ "plasmid_name": "tetO-GATA6", "sequence-type": "addgene-full", "addgene_id": "170688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170688.addgene-full.gb" }, @@ -5917,7 +7337,10 @@ "plasmid_name": "p2R3z-BASI-ccdB-BSAI", "sequence-type": "addgene-full", "addgene_id": "118389", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "file": "data/addgene_plasmids/118389.addgene-full.gb" }, @@ -5926,7 +7349,10 @@ "plasmid_name": "pCMB-MTUBr", "sequence-type": "depositor-full", "addgene_id": "61197", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61197.depositor-full.gb" }, @@ -5935,7 +7361,10 @@ "plasmid_name": "pLX304-FOS-V5", "sequence-type": "addgene-full", "addgene_id": "59140", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.06.004", + "https://www.ncbi.nlm.nih.gov/pubmed/24954536" + ], "kit": null, "file": "data/addgene_plasmids/59140.addgene-full.gb" }, @@ -5944,7 +7373,10 @@ "plasmid_name": "769 pME mCerulean-CAAX", "sequence-type": "addgene-full", "addgene_id": "195957", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195957.addgene-full.gb" }, @@ -5953,7 +7385,9 @@ "plasmid_name": "pH4-DEST", "sequence-type": "addgene-full", "addgene_id": "90099", - "references": [], + "references": [ + "https://doi.org/10.7287/peerj.preprints.2907v1" + ], "kit": null, "file": "data/addgene_plasmids/90099.addgene-full.gb" }, @@ -5962,7 +7396,10 @@ "plasmid_name": "pUASTP2.1", "sequence-type": "depositor-full", "addgene_id": "13842", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.106.056945", + "https://www.ncbi.nlm.nih.gov/pubmed/16547094" + ], "kit": null, "file": "data/addgene_plasmids/13842.depositor-full.gb" }, @@ -5971,7 +7408,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-GFP (gRNA: Ascl1-3)", "sequence-type": "addgene-full", "addgene_id": "159658", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/159658.addgene-full.gb" }, @@ -5980,7 +7420,10 @@ "plasmid_name": "HJP-177-IVS-Syn21-gp41-1C-CreBC-WPREw", "sequence-type": "addgene-full", "addgene_id": "162474", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162474.addgene-full.gb" }, @@ -5989,7 +7432,10 @@ "plasmid_name": "pUB6-VSV-GS", "sequence-type": "addgene-full", "addgene_id": "190781", - "references": [], + "references": [ + "https://doi.org/10.1186/1742-4690-7-3", + "https://www.ncbi.nlm.nih.gov/pubmed/20100344" + ], "kit": null, "file": "data/addgene_plasmids/190781.addgene-full.gb" }, @@ -5998,7 +7444,6 @@ "plasmid_name": "pHAGE-CMV-Flag-CDK13_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135276", - "references": [], "kit": null, "file": "data/addgene_plasmids/135276.addgene-full.gb" }, @@ -6007,7 +7452,10 @@ "plasmid_name": "pSC10", "sequence-type": "addgene-full", "addgene_id": "104784", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104784.addgene-full.gb" }, @@ -6016,7 +7464,6 @@ "plasmid_name": "PB-TET-ZH-lox66FRT", "sequence-type": "addgene-full", "addgene_id": "139563", - "references": [], "kit": null, "file": "data/addgene_plasmids/139563.addgene-full.gb" }, @@ -6025,7 +7472,10 @@ "plasmid_name": "pTW064", "sequence-type": "addgene-full", "addgene_id": "115951", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115951.addgene-full.gb" }, @@ -6034,7 +7484,10 @@ "plasmid_name": "pMx/ATP8A1(E191Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209252", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209252.addgene-full.gb" }, @@ -6043,7 +7496,10 @@ "plasmid_name": "pHAGE-MRPS31-R219C", "sequence-type": "addgene-full", "addgene_id": "116437", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116437.addgene-full.gb" }, @@ -6052,7 +7508,10 @@ "plasmid_name": "MAC-IFITM1", "sequence-type": "addgene-full", "addgene_id": "172417", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172417.addgene-full.gb" }, @@ -6061,7 +7520,10 @@ "plasmid_name": "pDONR223_REG1B_p.K157T", "sequence-type": "addgene-full", "addgene_id": "81283", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -6073,7 +7535,10 @@ "plasmid_name": "pTORKm43GWC", "sequence-type": "addgene-full", "addgene_id": "112898", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01516-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31575765" + ], "kit": null, "file": "data/addgene_plasmids/112898.addgene-full.gb" }, @@ -6082,7 +7547,6 @@ "plasmid_name": "pAG416GAL-2x-uA-ccdB-6stop", "sequence-type": "addgene-full", "addgene_id": "203517", - "references": [], "kit": null, "file": "data/addgene_plasmids/203517.addgene-full.gb" }, @@ -6091,7 +7555,10 @@ "plasmid_name": "MAC_N_CDK8", "sequence-type": "addgene-full", "addgene_id": "111685", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111685.addgene-full.gb" }, @@ -6100,7 +7567,10 @@ "plasmid_name": "plenti6-SLC7A11/xCT-V5", "sequence-type": "addgene-full", "addgene_id": "170427", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M117.798405", + "https://www.ncbi.nlm.nih.gov/pubmed/28630042" + ], "kit": null, "file": "data/addgene_plasmids/170427.addgene-full.gb" }, @@ -6109,7 +7579,9 @@ "plasmid_name": "pMpGWB108", "sequence-type": "depositor-full", "addgene_id": "68562", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68562.depositor-full.gb" }, @@ -6118,7 +7590,10 @@ "plasmid_name": "pDL106", "sequence-type": "addgene-full", "addgene_id": "175911", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175911.addgene-full.gb" }, @@ -6127,7 +7602,6 @@ "plasmid_name": "EV-A71 2A protease; 6xHis-MBP-TEV tag, self cleaving", "sequence-type": "addgene-full", "addgene_id": "204811", - "references": [], "kit": null, "file": "data/addgene_plasmids/204811.addgene-full.gb" }, @@ -6136,7 +7610,10 @@ "plasmid_name": "Tol2-krt4-RFP-miR-223 sponge", "sequence-type": "addgene-full", "addgene_id": "97150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "file": "data/addgene_plasmids/97150.addgene-full.gb" }, @@ -6145,7 +7622,10 @@ "plasmid_name": "MEN2A-SHC", "sequence-type": "addgene-full", "addgene_id": "139618", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139618.addgene-full.gb" }, @@ -6154,7 +7634,10 @@ "plasmid_name": "SLC19A1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176951", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176951.addgene-full.gb" }, @@ -6163,7 +7646,10 @@ "plasmid_name": "MAC_C_ROR2", "sequence-type": "addgene-full", "addgene_id": "187759", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187759.addgene-full.gb" }, @@ -6172,7 +7658,10 @@ "plasmid_name": "pDONR223_GLI1_WT", "sequence-type": "addgene-full", "addgene_id": "82123", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82123.addgene-full.gb" }, @@ -6181,7 +7670,6 @@ "plasmid_name": "g4s pDONR", "sequence-type": "addgene-full", "addgene_id": "117447", - "references": [], "kit": null, "file": "data/addgene_plasmids/117447.addgene-full.gb" }, @@ -6190,7 +7678,10 @@ "plasmid_name": "pLV-PLXNB2-decto", "sequence-type": "addgene-full", "addgene_id": "86238", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "file": "data/addgene_plasmids/86238.addgene-full.gb" }, @@ -6199,7 +7690,10 @@ "plasmid_name": "pEXPA10-NLS-3xmCitrine", "sequence-type": "addgene-full", "addgene_id": "192523", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.112676", + "https://www.ncbi.nlm.nih.gov/pubmed/37342910" + ], "kit": null, "file": "data/addgene_plasmids/192523.addgene-full.gb" }, @@ -6208,7 +7702,10 @@ "plasmid_name": "pDONR221-SFXN2", "sequence-type": "addgene-full", "addgene_id": "132256", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132256.addgene-full.gb" }, @@ -6217,7 +7714,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-EBFP2", "sequence-type": "addgene-full", "addgene_id": "158553", - "references": [], "kit": null, "file": "data/addgene_plasmids/158553.addgene-full.gb" }, @@ -6226,7 +7722,10 @@ "plasmid_name": "OLIG2_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53858", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53858.addgene-full.gb" }, @@ -6235,7 +7734,10 @@ "plasmid_name": "pAG426GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14252", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -6247,7 +7749,10 @@ "plasmid_name": "pENTR223-BVLF1.5", "sequence-type": "addgene-full", "addgene_id": "195791", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195791.addgene-full.gb" }, @@ -6256,7 +7761,10 @@ "plasmid_name": "C514-E10: attB5r-RU5u-HA-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162952", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -6268,7 +7776,10 @@ "plasmid_name": "pENTR-L5-ECFP-L2", "sequence-type": "depositor-full", "addgene_id": "32592", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32592.depositor-full.gb" }, @@ -6277,7 +7788,9 @@ "plasmid_name": "pMpGWB307", "sequence-type": "depositor-full", "addgene_id": "68635", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68635.depositor-full.gb" }, @@ -6286,7 +7799,10 @@ "plasmid_name": "mKate2-P2A-APEX2-TAPP1-PH", "sequence-type": "depositor-full", "addgene_id": "67662", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67662.depositor-full.gb" }, @@ -6295,7 +7811,10 @@ "plasmid_name": "pENTR223-BXLF1", "sequence-type": "addgene-full", "addgene_id": "195825", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195825.addgene-full.gb" }, @@ -6304,7 +7823,10 @@ "plasmid_name": "pDEST40-CES2C-\u0394C-S230A", "sequence-type": "addgene-full", "addgene_id": "200557", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2023.04.011", + "https://www.ncbi.nlm.nih.gov/pubmed/37141889" + ], "kit": null, "file": "data/addgene_plasmids/200557.addgene-full.gb" }, @@ -6325,7 +7847,9 @@ "plasmid_name": "pDRF'- AmTryoshka1;3-LS-F138I", "sequence-type": "addgene-full", "addgene_id": "100922", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "file": "data/addgene_plasmids/100922.addgene-full.gb" }, @@ -6334,7 +7858,10 @@ "plasmid_name": "pDONR223_MLST8_WT", "sequence-type": "addgene-full", "addgene_id": "82258", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82258.addgene-full.gb" }, @@ -6343,7 +7870,10 @@ "plasmid_name": "pCFJ1655", "sequence-type": "depositor-full", "addgene_id": "51481", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/51481.depositor-full.gb" }, @@ -6352,7 +7882,10 @@ "plasmid_name": "pRK5mycGW-Eps8L2_529-715", "sequence-type": "addgene-full", "addgene_id": "196543", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196543.addgene-full.gb" }, @@ -6361,7 +7894,10 @@ "plasmid_name": "pENTR_L1-BirA(R118G)-NES-YFP-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127357", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127357.addgene-full.gb" }, @@ -6370,7 +7906,10 @@ "plasmid_name": "pDONR221-SFXN3_STOP", "sequence-type": "addgene-full", "addgene_id": "161434", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161434.addgene-full.gb" }, @@ -6379,7 +7918,9 @@ "plasmid_name": "pFLIP38", "sequence-type": "depositor-full", "addgene_id": "65616", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65616.depositor-full.gb" }, @@ -6388,7 +7929,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-7", "sequence-type": "depositor-full", "addgene_id": "46702", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46702.depositor-full.gb" }, @@ -6397,7 +7941,10 @@ "plasmid_name": "pME-TurboID-NS", "sequence-type": "addgene-full", "addgene_id": "166566", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "file": "data/addgene_plasmids/166566.addgene-full.gb" }, @@ -6406,7 +7953,10 @@ "plasmid_name": "2PH-PLCd-APEX2-P2A-mKate2", "sequence-type": "depositor-full", "addgene_id": "71284", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/71284.depositor-full.gb" }, @@ -6415,7 +7965,10 @@ "plasmid_name": "pEAHISPSVORF131", "sequence-type": "addgene-full", "addgene_id": "97022", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97022.addgene-full.gb" }, @@ -6424,7 +7977,10 @@ "plasmid_name": "Tol2-LyzC-Rac-DN(guide resistant)-2a-mcherry-U6ac-Rac guides", "sequence-type": "addgene-full", "addgene_id": "168243", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "file": "data/addgene_plasmids/168243.addgene-full.gb" }, @@ -6433,7 +7989,10 @@ "plasmid_name": "pDONR223-ZNF698", "sequence-type": "addgene-full", "addgene_id": "88666", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88666.addgene-full.gb" }, @@ -6442,7 +8001,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS", "sequence-type": "addgene-full", "addgene_id": "158628", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158628.addgene-full.gb" }, @@ -6451,7 +8013,10 @@ "plasmid_name": "pHAGE-PIK3CA-V105_R108delVGNR", "sequence-type": "addgene-full", "addgene_id": "116545", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116545.addgene-full.gb" }, @@ -6460,7 +8025,6 @@ "plasmid_name": "pAG416-GAL-TDP-43", "sequence-type": "addgene-full", "addgene_id": "181709", - "references": [], "kit": null, "file": "data/addgene_plasmids/181709.addgene-full.gb" }, @@ -6469,7 +8033,6 @@ "plasmid_name": "pAG416GAL10-HPeV_3C", "sequence-type": "addgene-full", "addgene_id": "203465", - "references": [], "kit": null, "file": "data/addgene_plasmids/203465.addgene-full.gb" }, @@ -6478,7 +8041,10 @@ "plasmid_name": "pCFJ1359 - Intron GG2 - smu-1", "sequence-type": "addgene-full", "addgene_id": "159805", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159805.addgene-full.gb" }, @@ -6487,7 +8053,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS1", "sequence-type": "depositor-full", "addgene_id": "20238", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20238.depositor-full.gb" }, @@ -6496,7 +8065,10 @@ "plasmid_name": "pBABEpuro-ERBB2 S310Y", "sequence-type": "addgene-full", "addgene_id": "40992", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1203201109", + "https://www.ncbi.nlm.nih.gov/pubmed/22908275" + ], "kit": null, "file": "data/addgene_plasmids/40992.addgene-full.gb" }, @@ -6505,7 +8077,10 @@ "plasmid_name": "pENTR D-TOPO-C3_28", "sequence-type": "depositor-full", "addgene_id": "60271", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60271.depositor-full.gb" }, @@ -6514,7 +8089,10 @@ "plasmid_name": "pHAGE-PIK3CA", "sequence-type": "addgene-full", "addgene_id": "116771", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116771.addgene-full.gb" }, @@ -6523,7 +8101,10 @@ "plasmid_name": "pAGW-dpse-GAL4-DBD", "sequence-type": "addgene-full", "addgene_id": "125153", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-019-1210-7", + "https://www.ncbi.nlm.nih.gov/pubmed/31092928" + ], "kit": null, "file": "data/addgene_plasmids/125153.addgene-full.gb" }, @@ -6532,7 +8113,10 @@ "plasmid_name": "pHAGE-PIK3CA-G1049R", "sequence-type": "addgene-full", "addgene_id": "116491", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116491.addgene-full.gb" }, @@ -6541,7 +8125,10 @@ "plasmid_name": "pWZL Neo Myr Flag CDK7", "sequence-type": "addgene-full", "addgene_id": "20452", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20452.addgene-full.gb" }, @@ -6550,7 +8137,10 @@ "plasmid_name": "MSCV-CMV-DsRed-IRES-d24EGFP", "sequence-type": "addgene-full", "addgene_id": "41944", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1160489", + "https://www.ncbi.nlm.nih.gov/pubmed/18988847" + ], "kit": null, "file": "data/addgene_plasmids/41944.addgene-full.gb" }, @@ -6559,7 +8149,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_K36E_R38A_E39A", "sequence-type": "depositor-full", "addgene_id": "65658", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65658.depositor-full.gb" }, @@ -6568,7 +8161,10 @@ "plasmid_name": "pDONR223_RAF1_WT", "sequence-type": "addgene-full", "addgene_id": "82317", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82317.addgene-full.gb" }, @@ -6577,7 +8173,10 @@ "plasmid_name": "pYPQ239A (dFnCas12a)-TV", "sequence-type": "addgene-full", "addgene_id": "136379", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136379.addgene-full.gb" }, @@ -6586,7 +8185,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab10", "sequence-type": "addgene-full", "addgene_id": "166429", - "references": [], "kit": null, "file": "data/addgene_plasmids/166429.addgene-full.gb" }, @@ -6595,7 +8193,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL2 WT", "sequence-type": "addgene-full", "addgene_id": "123103", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123103.addgene-full.gb" }, @@ -6604,7 +8205,10 @@ "plasmid_name": "pDONR221_SLC35E3", "sequence-type": "addgene-full", "addgene_id": "132062", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132062.addgene-full.gb" }, @@ -6613,7 +8217,10 @@ "plasmid_name": "pZA9", "sequence-type": "addgene-full", "addgene_id": "158487", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158487.addgene-full.gb" }, @@ -6622,7 +8229,10 @@ "plasmid_name": "GRB2-SHN", "sequence-type": "addgene-full", "addgene_id": "139625", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139625.addgene-full.gb" }, @@ -6631,7 +8241,6 @@ "plasmid_name": "pDONR221-si:ch73-1a9.3", "sequence-type": "addgene-full", "addgene_id": "192717", - "references": [], "kit": null, "file": "data/addgene_plasmids/192717.addgene-full.gb" }, @@ -6640,7 +8249,6 @@ "plasmid_name": "pCW57.1_TStrp_HA_Nt", "sequence-type": "addgene-full", "addgene_id": "194065", - "references": [], "kit": null, "file": "data/addgene_plasmids/194065.addgene-full.gb" }, @@ -6649,7 +8257,10 @@ "plasmid_name": "p21-M694I-MEFV", "sequence-type": "addgene-full", "addgene_id": "134710", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "file": "data/addgene_plasmids/134710.addgene-full.gb" }, @@ -6658,7 +8269,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir16-1.1", "sequence-type": "depositor-full", "addgene_id": "46680", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46680.depositor-full.gb" }, @@ -6667,7 +8281,10 @@ "plasmid_name": "pDONR221 CARD8 PAM L368G", "sequence-type": "addgene-full", "addgene_id": "169978", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169978.addgene-full.gb" }, @@ -6676,7 +8293,10 @@ "plasmid_name": "YES1 Y537F", "sequence-type": "depositor-full", "addgene_id": "51299", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/23245941" + ], "kit": null, "file": "data/addgene_plasmids/51299.depositor-full.gb" }, @@ -6685,7 +8305,10 @@ "plasmid_name": "pDONR221-SLC12A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161122", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161122.addgene-full.gb" }, @@ -6694,7 +8317,10 @@ "plasmid_name": "pDONR223_FBXW7_p.R505C", "sequence-type": "addgene-full", "addgene_id": "81507", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -6706,7 +8332,10 @@ "plasmid_name": "pCZGY546", "sequence-type": "addgene-full", "addgene_id": "90466", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/90466.addgene-full.gb" }, @@ -6715,7 +8344,10 @@ "plasmid_name": "TFORF3257", "sequence-type": "addgene-full", "addgene_id": "144733", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144733.addgene-full.gb" }, @@ -6724,7 +8356,10 @@ "plasmid_name": "actc1b-mKate2-rab27a", "sequence-type": "addgene-full", "addgene_id": "109617", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109617.addgene-full.gb" }, @@ -6733,7 +8368,10 @@ "plasmid_name": "pcDNA3_attR1-ORF-attR2-NTEV-TCS-GV-2xHA_DEST", "sequence-type": "addgene-full", "addgene_id": "194385", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194385.addgene-full.gb" }, @@ -6742,7 +8380,10 @@ "plasmid_name": "TFORF3411", "sequence-type": "addgene-full", "addgene_id": "144887", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144887.addgene-full.gb" }, @@ -6751,7 +8392,10 @@ "plasmid_name": "pQLinkHD_mTFP1-mVenus", "sequence-type": "addgene-full", "addgene_id": "118859", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "file": "data/addgene_plasmids/118859.addgene-full.gb" }, @@ -6760,7 +8404,10 @@ "plasmid_name": "pHAGE-ERBB2-D769N", "sequence-type": "addgene-full", "addgene_id": "116328", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116328.addgene-full.gb" }, @@ -6769,7 +8416,10 @@ "plasmid_name": "pDONR223_TPK1_p.T205S", "sequence-type": "addgene-full", "addgene_id": "82861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82861.addgene-full.gb" }, @@ -6778,7 +8428,6 @@ "plasmid_name": "pCLXEBR-pTF-kRasV12", "sequence-type": "addgene-full", "addgene_id": "114318", - "references": [], "kit": null, "file": "data/addgene_plasmids/114318.addgene-full.gb" }, @@ -6787,7 +8436,10 @@ "plasmid_name": "pMuLE ENTR SV40-hCas9 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62134", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62134.depositor-full.gb" }, @@ -6796,7 +8448,6 @@ "plasmid_name": "R777-E179 Hs.PIK3R5", "sequence-type": "depositor-full", "addgene_id": "70463", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -6808,7 +8459,10 @@ "plasmid_name": "pDONR221-SLC39A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161259", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161259.addgene-full.gb" }, @@ -6817,7 +8471,10 @@ "plasmid_name": "5'-BirA-FLAG Kdm1a+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212089", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212089.addgene-full.gb" }, @@ -6826,7 +8483,10 @@ "plasmid_name": "pCMV-Target-AIDmax", "sequence-type": "addgene-full", "addgene_id": "139107", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0509-0", + "https://www.ncbi.nlm.nih.gov/pubmed/32483365" + ], "kit": null, "file": "data/addgene_plasmids/139107.addgene-full.gb" }, @@ -6835,7 +8495,10 @@ "plasmid_name": "TFORF2972", "sequence-type": "addgene-full", "addgene_id": "144448", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144448.addgene-full.gb" }, @@ -6844,7 +8507,10 @@ "plasmid_name": "LB701: pMVP/PB/mCherry-DEST", "sequence-type": "addgene-full", "addgene_id": "121871", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121871.addgene-full.gb" }, @@ -6853,7 +8519,10 @@ "plasmid_name": "pDONR223_EYS_p.Q172L", "sequence-type": "addgene-full", "addgene_id": "81448", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -6865,7 +8534,10 @@ "plasmid_name": "pDONR221_SLC1A3", "sequence-type": "addgene-full", "addgene_id": "131889", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131889.addgene-full.gb" }, @@ -6874,7 +8546,10 @@ "plasmid_name": "pAC1806_pmax-FKBP-dCasRx", "sequence-type": "addgene-full", "addgene_id": "118639", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118639.addgene-full.gb" }, @@ -6883,7 +8558,10 @@ "plasmid_name": "p3E-Rab38c", "sequence-type": "addgene-full", "addgene_id": "109758", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109758.addgene-full.gb" }, @@ -6892,7 +8570,10 @@ "plasmid_name": "pSM2", "sequence-type": "addgene-full", "addgene_id": "85753", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mimet.2016.12.017", + "https://www.ncbi.nlm.nih.gov/pubmed/28017692" + ], "kit": null, "file": "data/addgene_plasmids/85753.addgene-full.gb" }, @@ -6901,7 +8582,6 @@ "plasmid_name": "p667-UBC-HIPK3-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158191", - "references": [], "kit": null, "file": "data/addgene_plasmids/158191.addgene-full.gb" }, @@ -6910,7 +8590,10 @@ "plasmid_name": "pAG306GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14163", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -6922,7 +8605,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP7_nostop", "sequence-type": "addgene-full", "addgene_id": "149310", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149310.addgene-full.gb" }, @@ -6931,7 +8617,10 @@ "plasmid_name": "LIIbeta F 1-2 RNAi", "sequence-type": "depositor-full", "addgene_id": "54403", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54403.depositor-full.gb" }, @@ -6940,7 +8629,10 @@ "plasmid_name": "pOPTXLUC", "sequence-type": "depositor-full", "addgene_id": "68504", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-13-97", + "https://www.ncbi.nlm.nih.gov/pubmed/24206622" + ], "kit": null, "file": "data/addgene_plasmids/68504.depositor-full.gb" }, @@ -6949,7 +8641,10 @@ "plasmid_name": "pAAV2-SynTetOff-GFP", "sequence-type": "addgene-full", "addgene_id": "190231", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190231.addgene-full.gb" }, @@ -6958,7 +8653,10 @@ "plasmid_name": "pCZGY2845", "sequence-type": "addgene-full", "addgene_id": "87763", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/87763.addgene-full.gb" }, @@ -6967,7 +8665,10 @@ "plasmid_name": "pInducer20-iCreb5(T59/T61D)(HA)", "sequence-type": "addgene-full", "addgene_id": "195028", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "file": "data/addgene_plasmids/195028.addgene-full.gb" }, @@ -6976,7 +8677,10 @@ "plasmid_name": "pAG306GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14404", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -6988,7 +8692,10 @@ "plasmid_name": "pDONR223_EGFR_p.A289V", "sequence-type": "addgene-full", "addgene_id": "81733", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -7000,7 +8707,10 @@ "plasmid_name": "pJOG130", "sequence-type": "addgene-full", "addgene_id": "105336", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -7012,7 +8722,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189871", - "references": [], "kit": null, "file": "data/addgene_plasmids/189871.addgene-full.gb" }, @@ -7021,7 +8730,10 @@ "plasmid_name": "pDONR221-SLC2A13_STOP", "sequence-type": "addgene-full", "addgene_id": "161316", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161316.addgene-full.gb" }, @@ -7030,7 +8742,10 @@ "plasmid_name": "A1-LCD Perfect Mix", "sequence-type": "addgene-full", "addgene_id": "169718", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "file": "data/addgene_plasmids/169718.addgene-full.gb" }, @@ -7039,7 +8754,10 @@ "plasmid_name": "pDONR223_SMR3A_WT", "sequence-type": "addgene-full", "addgene_id": "81887", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -7051,7 +8769,10 @@ "plasmid_name": "p{3P3-mTurquoise::KD,attB}", "sequence-type": "addgene-full", "addgene_id": "182182", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182182.addgene-full.gb" }, @@ -7060,7 +8781,10 @@ "plasmid_name": "A1-LCD+7K+12D", "sequence-type": "addgene-full", "addgene_id": "178679", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178679.addgene-full.gb" }, @@ -7069,7 +8793,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp7", "sequence-type": "addgene-full", "addgene_id": "168935", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168935.addgene-full.gb" }, @@ -7078,7 +8805,10 @@ "plasmid_name": "pHAGE-BRAF-N581K", "sequence-type": "addgene-full", "addgene_id": "116187", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116187.addgene-full.gb" }, @@ -7087,7 +8817,10 @@ "plasmid_name": "CNOT2", "sequence-type": "addgene-full", "addgene_id": "155466", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155466.addgene-full.gb" }, @@ -7096,7 +8829,10 @@ "plasmid_name": "TFORF3031", "sequence-type": "addgene-full", "addgene_id": "144507", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144507.addgene-full.gb" }, @@ -7105,7 +8841,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP16_stop", "sequence-type": "addgene-full", "addgene_id": "168681", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168681.addgene-full.gb" }, @@ -7114,7 +8853,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 E_stop", "sequence-type": "addgene-full", "addgene_id": "168561", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168561.addgene-full.gb" }, @@ -7123,7 +8865,6 @@ "plasmid_name": "His SUMO TEV E78K SPOP 1-374", "sequence-type": "addgene-full", "addgene_id": "197018", - "references": [], "kit": null, "file": "data/addgene_plasmids/197018.addgene-full.gb" }, @@ -7132,7 +8873,10 @@ "plasmid_name": "pHAGE-EGFR-L747_A750delinsP", "sequence-type": "addgene-full", "addgene_id": "116267", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116267.addgene-full.gb" }, @@ -7141,7 +8885,10 @@ "plasmid_name": "TFORF3477", "sequence-type": "addgene-full", "addgene_id": "144953", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144953.addgene-full.gb" }, @@ -7150,7 +8897,10 @@ "plasmid_name": "pDONR223-ZNF607", "sequence-type": "addgene-full", "addgene_id": "88144", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88144.addgene-full.gb" }, @@ -7159,7 +8909,10 @@ "plasmid_name": "R620-M13-303: CMV51p> SARS-CoV-2 S(1-1213)-2P-T4f-His6 B.1.1.7", "sequence-type": "addgene-full", "addgene_id": "170197", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/170197.addgene-full.gb" }, @@ -7168,7 +8921,6 @@ "plasmid_name": "pDONR221-K202R-long-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192093", - "references": [], "kit": null, "file": "data/addgene_plasmids/192093.addgene-full.gb" }, @@ -7177,7 +8929,10 @@ "plasmid_name": "MAC_C_VPS26C", "sequence-type": "addgene-full", "addgene_id": "209690", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209690.addgene-full.gb" }, @@ -7186,7 +8941,10 @@ "plasmid_name": "pDEST-Spe3-RfA", "sequence-type": "addgene-full", "addgene_id": "186370", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186370.addgene-full.gb" }, @@ -7195,7 +8953,10 @@ "plasmid_name": "TFORF3507", "sequence-type": "depositor-full", "addgene_id": "144983", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144983.depositor-full.gb" }, @@ -7204,7 +8965,10 @@ "plasmid_name": "pEX-CMV-SP-STIM2(15-746)", "sequence-type": "depositor-full", "addgene_id": "18868", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "file": "data/addgene_plasmids/18868.depositor-full.gb" }, @@ -7213,7 +8977,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF3A", "sequence-type": "addgene-full", "addgene_id": "154416", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154416.addgene-full.gb" }, @@ -7222,7 +8989,10 @@ "plasmid_name": "pDONR223_ATF2_p.A481V", "sequence-type": "addgene-full", "addgene_id": "82773", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82773.addgene-full.gb" }, @@ -7231,7 +9001,10 @@ "plasmid_name": "pIF3", "sequence-type": "addgene-full", "addgene_id": "196068", - "references": [], + "references": [ + "https://doi.org/10.1128/msphere.00594-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36655998" + ], "kit": null, "file": "data/addgene_plasmids/196068.addgene-full.gb" }, @@ -7240,7 +9013,10 @@ "plasmid_name": "MLKS2delKASHexp", "sequence-type": "addgene-full", "addgene_id": "130862", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "file": "data/addgene_plasmids/130862.addgene-full.gb" }, @@ -7249,7 +9025,10 @@ "plasmid_name": "pHAGE-EGFR-V765G", "sequence-type": "addgene-full", "addgene_id": "116315", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116315.addgene-full.gb" }, @@ -7258,7 +9037,10 @@ "plasmid_name": "pDONR221_SLC17A7", "sequence-type": "addgene-full", "addgene_id": "131960", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131960.addgene-full.gb" }, @@ -7267,7 +9049,10 @@ "plasmid_name": "TFORF3319", "sequence-type": "addgene-full", "addgene_id": "144795", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144795.addgene-full.gb" }, @@ -7276,7 +9061,10 @@ "plasmid_name": "pPB-EF1a-MegaGate-DD-Hygro", "sequence-type": "addgene-full", "addgene_id": "175267", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175267.addgene-full.gb" }, @@ -7285,7 +9073,10 @@ "plasmid_name": "pEBTetD-\u03b2-tubulin_SNAP", "sequence-type": "addgene-full", "addgene_id": "136832", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136832.addgene-full.gb" }, @@ -7294,7 +9085,10 @@ "plasmid_name": "pDONR223 SCAF4_CRISPR resistant", "sequence-type": "addgene-full", "addgene_id": "122465", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "file": "data/addgene_plasmids/122465.addgene-full.gb" }, @@ -7303,7 +9097,10 @@ "plasmid_name": "pDONR221-SLC25A42_STOP", "sequence-type": "addgene-full", "addgene_id": "161184", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161184.addgene-full.gb" }, @@ -7312,7 +9109,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hADAM10(aa551-654)", "sequence-type": "addgene-full", "addgene_id": "189557", - "references": [], "kit": null, "file": "data/addgene_plasmids/189557.addgene-full.gb" }, @@ -7321,7 +9117,10 @@ "plasmid_name": "pEBTet-SNAP-POC5", "sequence-type": "addgene-full", "addgene_id": "136786", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136786.addgene-full.gb" }, @@ -7330,7 +9129,10 @@ "plasmid_name": "pDONR221-UNC93A_STOP", "sequence-type": "depositor-full", "addgene_id": "161448", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161448.depositor-full.gb" }, @@ -7339,7 +9141,10 @@ "plasmid_name": "pLgw V5-EcoDam", "sequence-type": "depositor-full", "addgene_id": "59210", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "file": "data/addgene_plasmids/59210.depositor-full.gb" }, @@ -7348,7 +9153,10 @@ "plasmid_name": "pDONR221-SLC35E1_STOP", "sequence-type": "addgene-full", "addgene_id": "161264", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161264.addgene-full.gb" }, @@ -7357,7 +9165,6 @@ "plasmid_name": "p667-UBC-MAP3K14-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189903", - "references": [], "kit": null, "file": "data/addgene_plasmids/189903.addgene-full.gb" }, @@ -7366,7 +9173,9 @@ "plasmid_name": "pMpGWB325", "sequence-type": "depositor-full", "addgene_id": "68653", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68653.depositor-full.gb" }, @@ -7375,7 +9184,10 @@ "plasmid_name": "pDONR223_SPOP_p.K101I", "sequence-type": "addgene-full", "addgene_id": "81641", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -7387,7 +9199,10 @@ "plasmid_name": "p3E-jph1a", "sequence-type": "addgene-full", "addgene_id": "109551", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109551.addgene-full.gb" }, @@ -7396,7 +9211,10 @@ "plasmid_name": "DDX27-1", "sequence-type": "addgene-full", "addgene_id": "155514", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155514.addgene-full.gb" }, @@ -7405,7 +9223,10 @@ "plasmid_name": "Ad-FOXO1 1-280", "sequence-type": "addgene-full", "addgene_id": "131534", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "file": "data/addgene_plasmids/131534.addgene-full.gb" }, @@ -7414,7 +9235,6 @@ "plasmid_name": "R777-E303 Hs.SAV1", "sequence-type": "depositor-full", "addgene_id": "70587", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -7426,7 +9246,10 @@ "plasmid_name": "pGMCSq17-10M-0X", "sequence-type": "depositor-full", "addgene_id": "27364", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "file": "data/addgene_plasmids/27364.depositor-full.gb" }, @@ -7435,7 +9258,10 @@ "plasmid_name": "pAG305GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14234", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -7447,7 +9273,10 @@ "plasmid_name": "pENTR-R4R3-2xmRuby-N", "sequence-type": "depositor-full", "addgene_id": "113753", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -7459,7 +9288,10 @@ "plasmid_name": "pDONR223_GALNT14_p.A187T", "sequence-type": "addgene-full", "addgene_id": "81475", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -7471,7 +9303,10 @@ "plasmid_name": "pDONR221-SLC11A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161050", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161050.addgene-full.gb" }, @@ -7480,7 +9315,10 @@ "plasmid_name": "pDONR223_RALA_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82988", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82988.addgene-full.gb" }, @@ -7489,7 +9327,10 @@ "plasmid_name": "actc1b-mKate2-Rab38b", "sequence-type": "addgene-full", "addgene_id": "109765", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109765.addgene-full.gb" }, @@ -7498,7 +9339,10 @@ "plasmid_name": "TFORF3165", "sequence-type": "addgene-full", "addgene_id": "144641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144641.addgene-full.gb" }, @@ -7507,7 +9351,6 @@ "plasmid_name": "60-p3E_INTRON-EmptyRNAi", "sequence-type": "addgene-full", "addgene_id": "163380", - "references": [], "kit": null, "file": "data/addgene_plasmids/163380.addgene-full.gb" }, @@ -7516,7 +9359,10 @@ "plasmid_name": "pMOS023: Peredox NADH/NAD+ sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163060", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163060.addgene-full.gb" }, @@ -7525,7 +9371,10 @@ "plasmid_name": "pMpGE010", "sequence-type": "depositor-full", "addgene_id": "71536", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0205117", + "https://www.ncbi.nlm.nih.gov/pubmed/30379827" + ], "kit": null, "file": "data/addgene_plasmids/71536.depositor-full.gb" }, @@ -7534,7 +9383,10 @@ "plasmid_name": "pHAGE-AXL-R506H", "sequence-type": "addgene-full", "addgene_id": "116121", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116121.addgene-full.gb" }, @@ -7543,7 +9395,10 @@ "plasmid_name": "pDEST-mCherry-GJA1-20k-N1", "sequence-type": "addgene-full", "addgene_id": "49861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2013.10.009", + "https://www.ncbi.nlm.nih.gov/pubmed/24210816" + ], "kit": null, "file": "data/addgene_plasmids/49861.addgene-full.gb" }, @@ -7564,7 +9419,10 @@ "plasmid_name": "pDONR223_FBXW7_WT", "sequence-type": "addgene-full", "addgene_id": "81795", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -7576,7 +9434,10 @@ "plasmid_name": "pKRG3-mU6-PUb-hSpCas9", "sequence-type": "addgene-full", "addgene_id": "162162", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-80436-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33436886" + ], "kit": null, "file": "data/addgene_plasmids/162162.addgene-full.gb" }, @@ -7585,7 +9446,10 @@ "plasmid_name": "SPOP-V5 (F133V)", "sequence-type": "addgene-full", "addgene_id": "169725", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169725.addgene-full.gb" }, @@ -7594,7 +9458,10 @@ "plasmid_name": "pAAV_18xTEAD_luc2", "sequence-type": "addgene-full", "addgene_id": "173003", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/173003.addgene-full.gb" }, @@ -7603,7 +9470,6 @@ "plasmid_name": "Human-Dysferlin-v1", "sequence-type": "depositor-full", "addgene_id": "60217", - "references": [], "kit": null, "file": "data/addgene_plasmids/60217.depositor-full.gb" }, @@ -7612,7 +9478,9 @@ "plasmid_name": "pDONR221-PRPF39(1of2)", "sequence-type": "addgene-full", "addgene_id": "166199", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166199.addgene-full.gb" }, @@ -7621,7 +9489,10 @@ "plasmid_name": "pDEST51-LRRK2-WT", "sequence-type": "addgene-full", "addgene_id": "25080", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M708718200", + "https://www.ncbi.nlm.nih.gov/pubmed/18397888" + ], "kit": null, "file": "data/addgene_plasmids/25080.addgene-full.gb" }, @@ -7630,7 +9501,10 @@ "plasmid_name": "pID2.02", "sequence-type": "depositor-full", "addgene_id": "26955", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2008.07.008", + "https://www.ncbi.nlm.nih.gov/pubmed/18692039" + ], "kit": null, "file": "data/addgene_plasmids/26955.depositor-full.gb" }, @@ -7639,7 +9513,10 @@ "plasmid_name": "LC402: pMVP (L3-L2) eGFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121763", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121763.addgene-full.gb" }, @@ -7648,7 +9525,10 @@ "plasmid_name": "p3E_BAG3P209L-eGFP", "sequence-type": "addgene-full", "addgene_id": "98181", - "references": [], + "references": [ + "https://doi.org/10.1007/s00401-014-1344-5", + "https://www.ncbi.nlm.nih.gov/pubmed/25273835" + ], "kit": null, "file": "data/addgene_plasmids/98181.addgene-full.gb" }, @@ -7657,7 +9537,10 @@ "plasmid_name": "sox10:PDGFRA wild-type", "sequence-type": "depositor-full", "addgene_id": "98696", - "references": [], + "references": [ + "https://doi.org/10.1038/onc.2016.269", + "https://www.ncbi.nlm.nih.gov/pubmed/27477693" + ], "kit": null, "file": "data/addgene_plasmids/98696.depositor-full.gb" }, @@ -7666,7 +9549,10 @@ "plasmid_name": "pENTR223-BOLF1", "sequence-type": "addgene-full", "addgene_id": "198579", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198579.addgene-full.gb" }, @@ -7675,7 +9561,10 @@ "plasmid_name": "pDONR223_ARAF_p.S214F_p.D429A", "sequence-type": "addgene-full", "addgene_id": "82913", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82913.addgene-full.gb" }, @@ -7684,7 +9573,10 @@ "plasmid_name": "pCS2+ Integrin beta 1b-mKate", "sequence-type": "addgene-full", "addgene_id": "105975", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.22689", + "https://www.ncbi.nlm.nih.gov/pubmed/28372636" + ], "kit": null, "file": "data/addgene_plasmids/105975.addgene-full.gb" }, @@ -7693,7 +9585,10 @@ "plasmid_name": "R713-M48-303: CMV51p> Halotag-Kras4aHVR", "sequence-type": "addgene-full", "addgene_id": "159684", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "file": "data/addgene_plasmids/159684.addgene-full.gb" }, @@ -7702,7 +9597,10 @@ "plasmid_name": "pWZL Neo Myr Flag AXL", "sequence-type": "addgene-full", "addgene_id": "20428", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20428.addgene-full.gb" }, @@ -7711,7 +9609,6 @@ "plasmid_name": "pAV hH1-ARRET", "sequence-type": "depositor-full", "addgene_id": "111374", - "references": [], "kit": null, "file": "data/addgene_plasmids/111374.depositor-full.gb" }, @@ -7720,7 +9617,10 @@ "plasmid_name": "LIIalpha R 2-3", "sequence-type": "depositor-full", "addgene_id": "54349", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54349.depositor-full.gb" }, @@ -7729,7 +9629,10 @@ "plasmid_name": "pHAGE-PIK3CA-E365K", "sequence-type": "addgene-full", "addgene_id": "116470", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116470.addgene-full.gb" }, @@ -7738,7 +9641,9 @@ "plasmid_name": "p5E-mnx1", "sequence-type": "depositor-full", "addgene_id": "82402", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82402.depositor-full.gb" }, @@ -7747,7 +9652,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF3B", "sequence-type": "addgene-full", "addgene_id": "141272", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141272.addgene-full.gb" }, @@ -7756,7 +9664,10 @@ "plasmid_name": "pDONR221_SLC25A42", "sequence-type": "addgene-full", "addgene_id": "132018", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132018.addgene-full.gb" }, @@ -7765,7 +9676,10 @@ "plasmid_name": "pBoPyV2b-S24", "sequence-type": "depositor-full", "addgene_id": "62357", - "references": [], + "references": [ + "https://doi.org/10.1099/vir.0.000033", + "https://www.ncbi.nlm.nih.gov/pubmed/25568187" + ], "kit": null, "file": "data/addgene_plasmids/62357.depositor-full.gb" }, @@ -7774,7 +9688,10 @@ "plasmid_name": "pCZGY 1703 tomm-20N::miniSOG(426Cys) in pENTR[1-2]", "sequence-type": "depositor-full", "addgene_id": "66781", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1204096109", + "https://www.ncbi.nlm.nih.gov/pubmed/22532663" + ], "kit": null, "file": "data/addgene_plasmids/66781.depositor-full.gb" }, @@ -7783,7 +9700,10 @@ "plasmid_name": "pHAGE-SIRPB1", "sequence-type": "addgene-full", "addgene_id": "116790", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116790.addgene-full.gb" }, @@ -7792,7 +9712,10 @@ "plasmid_name": "pHAGE-IKBKB__ANK1", "sequence-type": "addgene-full", "addgene_id": "116824", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116824.addgene-full.gb" }, @@ -7801,7 +9724,6 @@ "plasmid_name": "R777-E316 Hs.SHOC2-nostop", "sequence-type": "depositor-full", "addgene_id": "70600", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -7813,7 +9735,10 @@ "plasmid_name": "R701-X56-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) G13D", "sequence-type": "addgene-full", "addgene_id": "159564", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159564.addgene-full.gb" }, @@ -7822,7 +9747,10 @@ "plasmid_name": "pYPQ265E1", "sequence-type": "addgene-full", "addgene_id": "164718", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164718.addgene-full.gb" }, @@ -7831,7 +9759,6 @@ "plasmid_name": "pKPY738", "sequence-type": "depositor-full", "addgene_id": "72674", - "references": [], "kit": null, "file": "data/addgene_plasmids/72674.depositor-full.gb" }, @@ -7840,7 +9767,10 @@ "plasmid_name": "MAC_C_AIFM1", "sequence-type": "addgene-full", "addgene_id": "111659", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111659.addgene-full.gb" }, @@ -7849,7 +9779,6 @@ "plasmid_name": "R777-E083 Hs.FGFR1", "sequence-type": "depositor-full", "addgene_id": "70367", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -7861,7 +9790,9 @@ "plasmid_name": "Non tagged Avidin", "sequence-type": "addgene-full", "addgene_id": "214835", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.01.21.576499" + ], "kit": null, "file": "data/addgene_plasmids/214835.addgene-full.gb" }, @@ -7870,7 +9801,10 @@ "plasmid_name": "pDONR221_SLC38A10", "sequence-type": "addgene-full", "addgene_id": "132083", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132083.addgene-full.gb" }, @@ -7879,7 +9813,10 @@ "plasmid_name": "pSGE_662_S2-1-Tor_dCP", "sequence-type": "depositor-full", "addgene_id": "71165", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71165.depositor-full.gb" }, @@ -7888,7 +9825,6 @@ "plasmid_name": "pLEX307-CTSL-puro", "sequence-type": "addgene-full", "addgene_id": "158466", - "references": [], "kit": null, "file": "data/addgene_plasmids/158466.addgene-full.gb" }, @@ -7897,7 +9833,10 @@ "plasmid_name": "pENTR L3-eGFP-Myc-L2", "sequence-type": "depositor-full", "addgene_id": "32314", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32314.depositor-full.gb" }, @@ -7906,7 +9845,10 @@ "plasmid_name": "pCAG/ATP10A-HA", "sequence-type": "addgene-full", "addgene_id": "209215", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209215.addgene-full.gb" }, @@ -7915,7 +9857,10 @@ "plasmid_name": "pGWB514", "sequence-type": "depositor-full", "addgene_id": "74856", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74856.depositor-full.gb" }, @@ -7924,7 +9869,6 @@ "plasmid_name": "pENTR-L4R1-PGK", "sequence-type": "addgene-full", "addgene_id": "139524", - "references": [], "kit": null, "file": "data/addgene_plasmids/139524.addgene-full.gb" }, @@ -7933,7 +9877,10 @@ "plasmid_name": "PB-TAG-ERN", "sequence-type": "depositor-full", "addgene_id": "80476", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "file": "data/addgene_plasmids/80476.depositor-full.gb" }, @@ -7942,7 +9889,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK11A_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214461", - "references": [], "kit": null, "file": "data/addgene_plasmids/214461.addgene-full.gb" }, @@ -7951,7 +9897,10 @@ "plasmid_name": "pDONR221_SLC51B", "sequence-type": "addgene-full", "addgene_id": "132157", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132157.addgene-full.gb" }, @@ -7960,7 +9909,6 @@ "plasmid_name": "EEF1A2 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216585", - "references": [], "kit": null, "file": "data/addgene_plasmids/216585.addgene-full.gb" }, @@ -7969,7 +9917,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(TM)-IRES-neo", "sequence-type": "addgene-full", "addgene_id": "128671", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128671.addgene-full.gb" }, @@ -7978,7 +9929,10 @@ "plasmid_name": "pWS487", "sequence-type": "addgene-full", "addgene_id": "123036", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123036.addgene-full.gb" }, @@ -7987,7 +9941,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-WT-neo", "sequence-type": "addgene-full", "addgene_id": "156177", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156177.addgene-full.gb" }, @@ -7996,7 +9953,10 @@ "plasmid_name": "pEAHISSSO2373", "sequence-type": "addgene-full", "addgene_id": "97058", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97058.addgene-full.gb" }, @@ -8005,7 +9965,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0525-luc2", "sequence-type": "addgene-full", "addgene_id": "214655", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214655.addgene-full.gb" }, @@ -8014,7 +9977,10 @@ "plasmid_name": "pDONR223_PIK3CD_WT", "sequence-type": "addgene-full", "addgene_id": "82222", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82222.addgene-full.gb" }, @@ -8023,7 +9989,10 @@ "plasmid_name": "pDEST15-Eps8L2_494-546", "sequence-type": "addgene-full", "addgene_id": "196539", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196539.addgene-full.gb" }, @@ -8032,7 +10001,10 @@ "plasmid_name": "pENTR223-BNLF2b", "sequence-type": "addgene-full", "addgene_id": "195770", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195770.addgene-full.gb" }, @@ -8041,7 +10013,10 @@ "plasmid_name": "pFRT-TODestGFP_RBPMS", "sequence-type": "depositor-full", "addgene_id": "65744", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.045005.114", + "https://www.ncbi.nlm.nih.gov/pubmed/24860013" + ], "kit": null, "file": "data/addgene_plasmids/65744.depositor-full.gb" }, @@ -8050,7 +10025,10 @@ "plasmid_name": "Flag-HA-PSMD14", "sequence-type": "addgene-full", "addgene_id": "22557", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22557.addgene-full.gb" }, @@ -8059,7 +10037,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-lsy-6", "sequence-type": "depositor-full", "addgene_id": "46650", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46650.depositor-full.gb" }, @@ -8068,7 +10049,10 @@ "plasmid_name": "pAG415GAL-ccdB-EYFP", "sequence-type": "addgene-full", "addgene_id": "14217", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -8080,7 +10064,10 @@ "plasmid_name": "pDest_U6_A2_CG2_erbb2_gRNA171", "sequence-type": "addgene-full", "addgene_id": "199385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "file": "data/addgene_plasmids/199385.addgene-full.gb" }, @@ -8089,7 +10076,6 @@ "plasmid_name": "R777-E045 Hs.E2F1", "sequence-type": "depositor-full", "addgene_id": "70329", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -8101,7 +10087,10 @@ "plasmid_name": "pDEST-EGFP-MACROD1", "sequence-type": "addgene-full", "addgene_id": "172584", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172584.addgene-full.gb" }, @@ -8110,7 +10099,10 @@ "plasmid_name": "pPV-TetO-SpCas9-GR-iC-ERiH (CRONUS-Hygro)", "sequence-type": "addgene-full", "addgene_id": "100597", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-017-18568-4", + "https://www.ncbi.nlm.nih.gov/pubmed/29321585" + ], "kit": null, "file": "data/addgene_plasmids/100597.addgene-full.gb" }, @@ -8119,7 +10111,10 @@ "plasmid_name": "pINDUCER20_mStrawberry_Atg4BC74A", "sequence-type": "addgene-full", "addgene_id": "161735", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2229-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32376951" + ], "kit": null, "file": "data/addgene_plasmids/161735.addgene-full.gb" }, @@ -8128,7 +10123,10 @@ "plasmid_name": "pDONR223_PPIAL4G_p.N35H", "sequence-type": "addgene-full", "addgene_id": "81310", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -8140,7 +10138,6 @@ "plasmid_name": "pDest-795", "sequence-type": "addgene-full", "addgene_id": "161881", - "references": [], "kit": null, "file": "data/addgene_plasmids/161881.addgene-full.gb" }, @@ -8149,7 +10146,10 @@ "plasmid_name": "pAG426GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14300", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -8161,7 +10161,10 @@ "plasmid_name": "punc503GFP", "sequence-type": "depositor-full", "addgene_id": "64021", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22385", + "https://www.ncbi.nlm.nih.gov/pubmed/23444339" + ], "kit": null, "file": "data/addgene_plasmids/64021.depositor-full.gb" }, @@ -8170,7 +10173,10 @@ "plasmid_name": "C413-E40: attB4-EFSp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162928", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -8182,7 +10188,10 @@ "plasmid_name": "pGWB424", "sequence-type": "depositor-full", "addgene_id": "74818", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74818.depositor-full.gb" }, @@ -8191,7 +10200,10 @@ "plasmid_name": "pDL4", "sequence-type": "addgene-full", "addgene_id": "175882", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175882.addgene-full.gb" }, @@ -8200,7 +10212,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6AP III (C41A, C46A, C840A)", "sequence-type": "addgene-full", "addgene_id": "119318", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119318.addgene-full.gb" }, @@ -8209,7 +10224,10 @@ "plasmid_name": "pENTR-L3-Csy4-Cas9n-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141046", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141046.addgene-full.gb" }, @@ -8218,7 +10236,10 @@ "plasmid_name": "pDONR223-ZNF98", "sequence-type": "addgene-full", "addgene_id": "88567", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88567.addgene-full.gb" }, @@ -8227,7 +10248,10 @@ "plasmid_name": "pHAGE-PTPN11-N308D", "sequence-type": "addgene-full", "addgene_id": "116644", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116644.addgene-full.gb" }, @@ -8236,7 +10260,10 @@ "plasmid_name": "pMXs-Atoh1", "sequence-type": "addgene-full", "addgene_id": "158529", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.55249", + "https://www.ncbi.nlm.nih.gov/pubmed/32602462" + ], "kit": null, "file": "data/addgene_plasmids/158529.addgene-full.gb" }, @@ -8245,7 +10272,6 @@ "plasmid_name": "pCDNA3-hTICAM1-VenusFlag", "sequence-type": "addgene-full", "addgene_id": "197632", - "references": [], "kit": null, "file": "data/addgene_plasmids/197632.addgene-full.gb" }, @@ -8254,7 +10280,6 @@ "plasmid_name": "pTwist-ENTR-NP_001373296.1", "sequence-type": "addgene-full", "addgene_id": "192750", - "references": [], "kit": null, "file": "data/addgene_plasmids/192750.addgene-full.gb" }, @@ -8263,7 +10288,10 @@ "plasmid_name": "HA-GFP1-10-pDEST-N", "sequence-type": "addgene-full", "addgene_id": "118368", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118368.addgene-full.gb" }, @@ -8272,7 +10300,10 @@ "plasmid_name": "pCPP5912", "sequence-type": "addgene-full", "addgene_id": "128703", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000388", + "https://www.ncbi.nlm.nih.gov/pubmed/19381254" + ], "kit": null, "file": "data/addgene_plasmids/128703.addgene-full.gb" }, @@ -8281,7 +10312,10 @@ "plasmid_name": "pDONR221_SLC23A2", "sequence-type": "addgene-full", "addgene_id": "132025", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132025.addgene-full.gb" }, @@ -8290,7 +10324,10 @@ "plasmid_name": "R989-X32-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) Q61R", "sequence-type": "addgene-full", "addgene_id": "159559", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159559.addgene-full.gb" }, @@ -8299,7 +10336,10 @@ "plasmid_name": "MAC_C_COX41", "sequence-type": "addgene-full", "addgene_id": "111664", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111664.addgene-full.gb" }, @@ -8308,7 +10348,10 @@ "plasmid_name": "p35S-hmKO2", "sequence-type": "addgene-full", "addgene_id": "182733", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182733.addgene-full.gb" }, @@ -8317,7 +10360,10 @@ "plasmid_name": "pDONR-A-HYG", "sequence-type": "depositor-full", "addgene_id": "29635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.fgb.2007.11.001", + "https://www.ncbi.nlm.nih.gov/pubmed/18248826" + ], "kit": null, "file": "data/addgene_plasmids/29635.depositor-full.gb" }, @@ -8326,7 +10372,10 @@ "plasmid_name": "D. vulgaris Cas5c/pHMGWA", "sequence-type": "addgene-full", "addgene_id": "81182", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2016.07.027", + "https://www.ncbi.nlm.nih.gov/pubmed/27588603" + ], "kit": null, "file": "data/addgene_plasmids/81182.addgene-full.gb" }, @@ -8335,7 +10384,10 @@ "plasmid_name": "pHAGE-ERBB4", "sequence-type": "addgene-full", "addgene_id": "116736", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116736.addgene-full.gb" }, @@ -8344,7 +10396,10 @@ "plasmid_name": "pAD-CMV-STAT5A-DN-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83252", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "file": "data/addgene_plasmids/83252.addgene-full.gb" }, @@ -8353,7 +10408,6 @@ "plasmid_name": "pDEST-EB-R4R3", "sequence-type": "addgene-full", "addgene_id": "139519", - "references": [], "kit": null, "file": "data/addgene_plasmids/139519.addgene-full.gb" }, @@ -8362,7 +10416,10 @@ "plasmid_name": "pJ23119-sgRNA", "sequence-type": "addgene-full", "addgene_id": "113654", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.8b00426", + "https://www.ncbi.nlm.nih.gov/pubmed/30703321" + ], "kit": null, "file": "data/addgene_plasmids/113654.addgene-full.gb" }, @@ -8371,7 +10428,10 @@ "plasmid_name": "pMx/ATP8B3-HA", "sequence-type": "addgene-full", "addgene_id": "209228", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209228.addgene-full.gb" }, @@ -8380,7 +10440,10 @@ "plasmid_name": "Six5 pGWB402", "sequence-type": "addgene-full", "addgene_id": "118013", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.3114", + "https://www.ncbi.nlm.nih.gov/pubmed/29481865" + ], "kit": null, "file": "data/addgene_plasmids/118013.addgene-full.gb" }, @@ -8389,7 +10452,10 @@ "plasmid_name": "pDEST-mCherry-ARHGEF2", "sequence-type": "addgene-full", "addgene_id": "207959", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2304288120", + "https://www.ncbi.nlm.nih.gov/pubmed/37844244" + ], "kit": null, "file": "data/addgene_plasmids/207959.addgene-full.gb" }, @@ -8398,7 +10464,10 @@ "plasmid_name": "PL-5LTR-GW-A", "sequence-type": "addgene-full", "addgene_id": "138480", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-14957-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32170079" + ], "kit": null, "file": "data/addgene_plasmids/138480.addgene-full.gb" }, @@ -8407,7 +10476,10 @@ "plasmid_name": "pDONR223_SPANXN4_p.P4Q", "sequence-type": "addgene-full", "addgene_id": "81262", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -8419,7 +10491,6 @@ "plasmid_name": "IDG_KCNAB2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161647", - "references": [], "kit": null, "file": "data/addgene_plasmids/161647.addgene-full.gb" }, @@ -8428,7 +10499,6 @@ "plasmid_name": "R777-E235 Hs.RASAL2", "sequence-type": "depositor-full", "addgene_id": "70519", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -8440,7 +10510,10 @@ "plasmid_name": "hu-TLR4 399 SNP flag pLenti4/To/v5/DEST", "sequence-type": "addgene-full", "addgene_id": "42651", - "references": [], + "references": [ + "https://doi.org/10.1002/hep.22697", + "https://www.ncbi.nlm.nih.gov/pubmed/19085953" + ], "kit": null, "file": "data/addgene_plasmids/42651.addgene-full.gb" }, @@ -8449,7 +10522,10 @@ "plasmid_name": "SMARCA2-GFP", "sequence-type": "addgene-full", "addgene_id": "65390", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65390.addgene-full.gb" }, @@ -8458,7 +10534,10 @@ "plasmid_name": "pDONR221 Nop16", "sequence-type": "depositor-full", "addgene_id": "63765", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63765.depositor-full.gb" }, @@ -8467,7 +10546,6 @@ "plasmid_name": "pDest eGFP CUGBP1", "sequence-type": "depositor-full", "addgene_id": "61276", - "references": [], "kit": null, "file": "data/addgene_plasmids/61276.depositor-full.gb" }, @@ -8476,7 +10554,6 @@ "plasmid_name": "His8:MBP-tev-Leu-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83386", - "references": [], "kit": null, "file": "data/addgene_plasmids/83386.addgene-full.gb" }, @@ -8485,7 +10562,10 @@ "plasmid_name": "pDestTol2-actinb-Hs.KCNJ13-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164945", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164945.addgene-full.gb" }, @@ -8494,7 +10574,10 @@ "plasmid_name": "pDONR221-SPNS2_STOP", "sequence-type": "addgene-full", "addgene_id": "161473", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161473.addgene-full.gb" }, @@ -8503,7 +10586,10 @@ "plasmid_name": "pAAV_MLP-BC0253-luc2", "sequence-type": "addgene-full", "addgene_id": "214668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214668.addgene-full.gb" }, @@ -8512,7 +10598,10 @@ "plasmid_name": "pT2-cryR;mafbbCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90137", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90137.addgene-full.gb" }, @@ -8521,7 +10610,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-S32-KD", "sequence-type": "addgene-full", "addgene_id": "140299", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140299.addgene-full.gb" }, @@ -8530,7 +10622,10 @@ "plasmid_name": "MAC_N_GATA4", "sequence-type": "addgene-full", "addgene_id": "167758", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167758.addgene-full.gb" }, @@ -8539,7 +10634,10 @@ "plasmid_name": "pRATIO2151", "sequence-type": "addgene-full", "addgene_id": "141300", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141300.addgene-full.gb" }, @@ -8548,7 +10646,10 @@ "plasmid_name": "pHAGE-PIK3CA-I112N", "sequence-type": "addgene-full", "addgene_id": "116502", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116502.addgene-full.gb" }, @@ -8557,7 +10658,10 @@ "plasmid_name": "pDONR223-PAK4", "sequence-type": "addgene-full", "addgene_id": "23713", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -8569,7 +10673,10 @@ "plasmid_name": "pHAGE-PIK3R1-L380delL", "sequence-type": "addgene-full", "addgene_id": "116599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116599.addgene-full.gb" }, @@ -8578,7 +10685,10 @@ "plasmid_name": "pDONR221_SLC9A9", "sequence-type": "addgene-full", "addgene_id": "132211", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132211.addgene-full.gb" }, @@ -8587,7 +10697,10 @@ "plasmid_name": "Zed_vector_tol2_+15.2prox1a:EGFP_XCA:DsRed2", "sequence-type": "addgene-full", "addgene_id": "218206", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.202525", + "https://www.ncbi.nlm.nih.gov/pubmed/38722096" + ], "kit": null, "file": "data/addgene_plasmids/218206.addgene-full.gb" }, @@ -8596,7 +10709,10 @@ "plasmid_name": "p667-UBC-NRF3-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207816", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207816.addgene-full.gb" }, @@ -8605,7 +10721,10 @@ "plasmid_name": "pDONR223_SNAI1_WT", "sequence-type": "addgene-full", "addgene_id": "82164", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82164.addgene-full.gb" }, @@ -8614,7 +10733,10 @@ "plasmid_name": "pAAV2ss-U6-sgHTT1-7sk-sgCas9", "sequence-type": "addgene-full", "addgene_id": "190900", - "references": [], + "references": [ + "https://doi.org/10.1016/j.omtm.2023.03.013", + "https://www.ncbi.nlm.nih.gov/pubmed/37090478" + ], "kit": null, "file": "data/addgene_plasmids/190900.addgene-full.gb" }, @@ -8623,7 +10745,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV PrM", "sequence-type": "addgene-full", "addgene_id": "145360", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145360.addgene-full.gb" }, @@ -8632,7 +10757,9 @@ "plasmid_name": "pMpGWB418", "sequence-type": "depositor-full", "addgene_id": "68683", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68683.depositor-full.gb" }, @@ -8641,7 +10768,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TP53RK_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170589", - "references": [], "kit": null, "file": "data/addgene_plasmids/170589.addgene-full.gb" }, @@ -8650,7 +10776,10 @@ "plasmid_name": "C234-E26: attB2r-Halotag-attB3", "sequence-type": "addgene-full", "addgene_id": "162915", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -8662,7 +10791,10 @@ "plasmid_name": "pGGEV_4_Linker", "sequence-type": "depositor-full", "addgene_id": "49284", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -8674,7 +10806,6 @@ "plasmid_name": "R777-E273 Hs.RCE1", "sequence-type": "depositor-full", "addgene_id": "70557", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -8686,7 +10817,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3A G120A", "sequence-type": "addgene-full", "addgene_id": "123090", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123090.addgene-full.gb" }, @@ -8695,7 +10829,10 @@ "plasmid_name": "pHAGE-SIRPB1-R124Q", "sequence-type": "addgene-full", "addgene_id": "116679", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116679.addgene-full.gb" }, @@ -8704,7 +10841,10 @@ "plasmid_name": "pShuttle.Cre", "sequence-type": "addgene-full", "addgene_id": "192930", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "file": "data/addgene_plasmids/192930.addgene-full.gb" }, @@ -8713,7 +10853,10 @@ "plasmid_name": "pMuLE ENTR CMV PuroR L3-L2", "sequence-type": "depositor-full", "addgene_id": "62163", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62163.depositor-full.gb" }, @@ -8722,7 +10865,6 @@ "plasmid_name": "pAG416-GAL-RNQ1", "sequence-type": "addgene-full", "addgene_id": "181706", - "references": [], "kit": null, "file": "data/addgene_plasmids/181706.addgene-full.gb" }, @@ -8731,7 +10873,6 @@ "plasmid_name": "R777-E150 Hs.PAK2-nostop", "sequence-type": "depositor-full", "addgene_id": "70434", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -8743,7 +10884,10 @@ "plasmid_name": "BirA-Myc_N_HNF1a", "sequence-type": "addgene-full", "addgene_id": "167710", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167710.addgene-full.gb" }, @@ -8752,7 +10896,10 @@ "plasmid_name": "pAG416GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14387", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -8764,7 +10911,10 @@ "plasmid_name": "pLD-puro-Cc-PRDX5K85R-VA", "sequence-type": "addgene-full", "addgene_id": "98691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "file": "data/addgene_plasmids/98691.addgene-full.gb" }, @@ -8773,7 +10923,10 @@ "plasmid_name": "pWZL Neo Myr Flag LIMK1", "sequence-type": "addgene-full", "addgene_id": "20512", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20512.addgene-full.gb" }, @@ -8782,7 +10935,6 @@ "plasmid_name": "BRAF - P453A in pENTR", "sequence-type": "addgene-full", "addgene_id": "216610", - "references": [], "kit": null, "file": "data/addgene_plasmids/216610.addgene-full.gb" }, @@ -8791,7 +10943,10 @@ "plasmid_name": "pME-Ruby2-NS", "sequence-type": "addgene-full", "addgene_id": "166569", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "file": "data/addgene_plasmids/166569.addgene-full.gb" }, @@ -8800,7 +10955,10 @@ "plasmid_name": "pDONR223-ZNF436", "sequence-type": "addgene-full", "addgene_id": "88589", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88589.addgene-full.gb" }, @@ -8809,7 +10967,10 @@ "plasmid_name": "pWS495", "sequence-type": "addgene-full", "addgene_id": "123043", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123043.addgene-full.gb" }, @@ -8818,7 +10979,10 @@ "plasmid_name": "pDONR221_SLC35D2", "sequence-type": "addgene-full", "addgene_id": "132122", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132122.addgene-full.gb" }, @@ -8827,7 +10991,9 @@ "plasmid_name": "pDONR223-TAF5-\u2206ex8_WobbleMut", "sequence-type": "addgene-full", "addgene_id": "209054", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209054.addgene-full.gb" }, @@ -8836,7 +11002,10 @@ "plasmid_name": "pLX311 hcRed1", "sequence-type": "addgene-full", "addgene_id": "117733", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117733.addgene-full.gb" }, @@ -8845,7 +11014,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0382-luc2", "sequence-type": "addgene-full", "addgene_id": "214620", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214620.addgene-full.gb" }, @@ -8854,7 +11026,10 @@ "plasmid_name": "pDONR223_DIABLO_WT", "sequence-type": "addgene-full", "addgene_id": "82257", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82257.addgene-full.gb" }, @@ -8863,7 +11038,10 @@ "plasmid_name": "pENTR_L1-Turbo-NES-YFP-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127358", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127358.addgene-full.gb" }, @@ -8872,7 +11050,10 @@ "plasmid_name": "pAG303GPD-ccdB-EGFP", "sequence-type": "addgene-full", "addgene_id": "14182", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -8884,7 +11065,10 @@ "plasmid_name": "3xflag-APEX2-LRRK2", "sequence-type": "addgene-full", "addgene_id": "164622", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164622.addgene-full.gb" }, @@ -8893,7 +11077,6 @@ "plasmid_name": "Hs.KRAS4b K104Q", "sequence-type": "depositor-full", "addgene_id": "83153", - "references": [], "kit": null, "file": "data/addgene_plasmids/83153.depositor-full.gb" }, @@ -8902,7 +11085,10 @@ "plasmid_name": "PB-CRX-T2A-NeuroD1", "sequence-type": "addgene-full", "addgene_id": "194607", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2022.103987", + "https://www.ncbi.nlm.nih.gov/pubmed/35330684" + ], "kit": null, "file": "data/addgene_plasmids/194607.addgene-full.gb" }, @@ -8911,7 +11097,10 @@ "plasmid_name": "pHAGE-PTEN-R130Q", "sequence-type": "addgene-full", "addgene_id": "116631", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116631.addgene-full.gb" }, @@ -8920,7 +11109,10 @@ "plasmid_name": "pENTR-R4-H1-BbsI-L2", "sequence-type": "addgene-full", "addgene_id": "141033", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141033.addgene-full.gb" }, @@ -8929,7 +11121,10 @@ "plasmid_name": "pENTR-R4R3-2xmRuby-N", "sequence-type": "addgene-full", "addgene_id": "113753", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -8941,7 +11136,10 @@ "plasmid_name": "pWZL Neo Myr Flag PLK1", "sequence-type": "addgene-full", "addgene_id": "20589", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20589.addgene-full.gb" }, @@ -8950,7 +11148,10 @@ "plasmid_name": "pLV-PLXNB2", "sequence-type": "addgene-full", "addgene_id": "86237", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "file": "data/addgene_plasmids/86237.addgene-full.gb" }, @@ -8959,7 +11160,10 @@ "plasmid_name": "YAP1 (S6A) - V5 in pLX304", "sequence-type": "addgene-full", "addgene_id": "42562", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/23245941" + ], "kit": null, "file": "data/addgene_plasmids/42562.addgene-full.gb" }, @@ -8968,7 +11172,10 @@ "plasmid_name": "pDONR223-ERBB3", "sequence-type": "addgene-full", "addgene_id": "23874", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -8980,7 +11187,10 @@ "plasmid_name": "pDONR221_SLC25A26", "sequence-type": "addgene-full", "addgene_id": "132259", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132259.addgene-full.gb" }, @@ -8989,7 +11199,10 @@ "plasmid_name": "Fragment1 with TLS2", "sequence-type": "addgene-full", "addgene_id": "196983", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-022-01585-8", + "https://www.ncbi.nlm.nih.gov/pubmed/36593415" + ], "kit": null, "file": "data/addgene_plasmids/196983.addgene-full.gb" }, @@ -8998,7 +11211,6 @@ "plasmid_name": "g4s pD47", "sequence-type": "addgene-full", "addgene_id": "117448", - "references": [], "kit": null, "file": "data/addgene_plasmids/117448.addgene-full.gb" }, @@ -9007,7 +11219,10 @@ "plasmid_name": "pDONR223_ISX_p.R86C", "sequence-type": "addgene-full", "addgene_id": "81365", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -9019,7 +11234,10 @@ "plasmid_name": "pZA10", "sequence-type": "addgene-full", "addgene_id": "158488", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158488.addgene-full.gb" }, @@ -9028,7 +11246,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab5c", "sequence-type": "addgene-full", "addgene_id": "166426", - "references": [], "kit": null, "file": "data/addgene_plasmids/166426.addgene-full.gb" }, @@ -9037,7 +11254,6 @@ "plasmid_name": "pDONR221-HMGN1", "sequence-type": "addgene-full", "addgene_id": "192718", - "references": [], "kit": null, "file": "data/addgene_plasmids/192718.addgene-full.gb" }, @@ -9046,7 +11262,10 @@ "plasmid_name": "C121-E02: ffLuc2", "sequence-type": "addgene-full", "addgene_id": "162889", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -9058,7 +11277,10 @@ "plasmid_name": "pLX317 GFP", "sequence-type": "addgene-full", "addgene_id": "193681", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193681.addgene-full.gb" }, @@ -9067,7 +11289,10 @@ "plasmid_name": "pDL214", "sequence-type": "addgene-full", "addgene_id": "175923", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175923.addgene-full.gb" }, @@ -9076,7 +11301,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aa3.8", "sequence-type": "addgene-full", "addgene_id": "136376", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136376.addgene-full.gb" }, @@ -9085,7 +11313,10 @@ "plasmid_name": "pGB-GST-3C-mCherry-ATG14/Vps34/Vps15/BECN1", "sequence-type": "addgene-full", "addgene_id": "187936", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.04.021", + "https://www.ncbi.nlm.nih.gov/pubmed/37207627" + ], "kit": null, "file": "data/addgene_plasmids/187936.addgene-full.gb" }, @@ -9094,7 +11325,6 @@ "plasmid_name": "IDG_LRRC55_OE_1", "sequence-type": "addgene-full", "addgene_id": "161694", - "references": [], "kit": null, "file": "data/addgene_plasmids/161694.addgene-full.gb" }, @@ -9103,7 +11333,6 @@ "plasmid_name": "pAG416GAL-EMCV_3C", "sequence-type": "addgene-full", "addgene_id": "201941", - "references": [], "kit": null, "file": "data/addgene_plasmids/201941.addgene-full.gb" }, @@ -9112,7 +11341,10 @@ "plasmid_name": "pMx/ATP10D(E215Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209260", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209260.addgene-full.gb" }, @@ -9121,7 +11353,10 @@ "plasmid_name": "K84M kinase-dead Nuak1-3xflag", "sequence-type": "addgene-full", "addgene_id": "97219", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2016.09.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27720485" + ], "kit": null, "file": "data/addgene_plasmids/97219.addgene-full.gb" }, @@ -9130,7 +11365,10 @@ "plasmid_name": "pJB553", "sequence-type": "addgene-full", "addgene_id": "115963", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115963.addgene-full.gb" }, @@ -9139,7 +11377,6 @@ "plasmid_name": "pSLIK luciferase-V5 neo", "sequence-type": "addgene-full", "addgene_id": "220364", - "references": [], "kit": null, "file": "data/addgene_plasmids/220364.addgene-full.gb" }, @@ -9148,7 +11385,6 @@ "plasmid_name": "pENTR-Venus", "sequence-type": "addgene-full", "addgene_id": "139551", - "references": [], "kit": null, "file": "data/addgene_plasmids/139551.addgene-full.gb" }, @@ -9157,7 +11393,6 @@ "plasmid_name": "p667-UBC-CDK12-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135244", - "references": [], "kit": null, "file": "data/addgene_plasmids/135244.addgene-full.gb" }, @@ -9166,7 +11401,10 @@ "plasmid_name": "pEZY3", "sequence-type": "depositor-full", "addgene_id": "18672", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18672.depositor-full.gb" }, @@ -9175,7 +11413,10 @@ "plasmid_name": "pcDNA3.2 V5-DEST 3XFlag-SRSF3", "sequence-type": "addgene-full", "addgene_id": "46736", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46736.addgene-full.gb" }, @@ -9184,7 +11425,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-UD", "sequence-type": "addgene-full", "addgene_id": "140305", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140305.addgene-full.gb" }, @@ -9193,7 +11437,10 @@ "plasmid_name": "pAXY0006", "sequence-type": "addgene-full", "addgene_id": "205575", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-023-04950-8", + "https://www.ncbi.nlm.nih.gov/pubmed/37237044" + ], "kit": null, "file": "data/addgene_plasmids/205575.addgene-full.gb" }, @@ -9202,7 +11449,10 @@ "plasmid_name": "pCK007 pME KalTa4", "sequence-type": "addgene-full", "addgene_id": "195965", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195965.addgene-full.gb" }, @@ -9211,7 +11461,9 @@ "plasmid_name": "p4P1R_EC1.2en-EC1.1p", "sequence-type": "addgene-full", "addgene_id": "213912", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.5029" + ], "kit": null, "file": "data/addgene_plasmids/213912.addgene-full.gb" }, @@ -9220,7 +11472,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-4", "sequence-type": "depositor-full", "addgene_id": "46699", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46699.depositor-full.gb" }, @@ -9229,7 +11484,10 @@ "plasmid_name": "p415PGK1-AtMAX1(pYL759)", "sequence-type": "addgene-full", "addgene_id": "178289", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178289.addgene-full.gb" }, @@ -9238,7 +11496,10 @@ "plasmid_name": "tetO-FOSL1", "sequence-type": "addgene-full", "addgene_id": "170687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170687.addgene-full.gb" }, @@ -9247,7 +11508,9 @@ "plasmid_name": "pMpGWB213", "sequence-type": "depositor-full", "addgene_id": "68604", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68604.depositor-full.gb" }, @@ -9256,7 +11519,10 @@ "plasmid_name": "BTK-APEX2-P2A-mKate2", "sequence-type": "depositor-full", "addgene_id": "67653", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67653.depositor-full.gb" }, @@ -9265,7 +11531,10 @@ "plasmid_name": "pHAGE-PIK3CG-E267K", "sequence-type": "addgene-full", "addgene_id": "116577", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116577.addgene-full.gb" }, @@ -9274,7 +11543,10 @@ "plasmid_name": "pAG414GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14263", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -9286,7 +11558,10 @@ "plasmid_name": "pENTR223-CMV-Cre-U6-sgNotch2#1-U6-sgRb1-U6-sgTrp53-U6-sgRbl2", "sequence-type": "addgene-full", "addgene_id": "209069", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-21-1991", + "https://www.ncbi.nlm.nih.gov/pubmed/34810201" + ], "kit": null, "file": "data/addgene_plasmids/209069.addgene-full.gb" }, @@ -9295,7 +11570,10 @@ "plasmid_name": "pHAGE-TGFB1-S192*", "sequence-type": "addgene-full", "addgene_id": "116697", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116697.addgene-full.gb" }, @@ -9304,7 +11582,10 @@ "plasmid_name": "pDONR221-SLC51A_STOP", "sequence-type": "addgene-full", "addgene_id": "161406", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161406.addgene-full.gb" }, @@ -9313,7 +11594,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-BirA(R118G)-YFP-NLS", "sequence-type": "addgene-full", "addgene_id": "127365", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127365.addgene-full.gb" }, @@ -9322,7 +11606,10 @@ "plasmid_name": "pT2-cryR;yrkCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90142", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90142.addgene-full.gb" }, @@ -9331,7 +11618,10 @@ "plasmid_name": "Active Wnt2-V5", "sequence-type": "addgene-full", "addgene_id": "43809", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43809.addgene-full.gb" }, @@ -9352,7 +11642,10 @@ "plasmid_name": "pDEST-cDNA5-FRT/TO-3*Flag-APEX2 C-term", "sequence-type": "addgene-full", "addgene_id": "182926", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/182926.addgene-full.gb" }, @@ -9361,7 +11654,10 @@ "plasmid_name": "pENTR223-EBNALP", "sequence-type": "addgene-full", "addgene_id": "195817", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195817.addgene-full.gb" }, @@ -9370,7 +11666,10 @@ "plasmid_name": "pLenti6.2-ccdB-Renilla", "sequence-type": "addgene-full", "addgene_id": "87073", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.047", + "https://www.ncbi.nlm.nih.gov/pubmed/22939624" + ], "kit": null, "file": "data/addgene_plasmids/87073.addgene-full.gb" }, @@ -9379,7 +11678,10 @@ "plasmid_name": "Flag-HA-USP46", "sequence-type": "addgene-full", "addgene_id": "22584", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22584.addgene-full.gb" }, @@ -9388,7 +11690,10 @@ "plasmid_name": "C514-E26: attB5r-RU5u-myc-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162960", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -9400,7 +11705,6 @@ "plasmid_name": "pLIX403-ccdB-G418", "sequence-type": "addgene-full", "addgene_id": "158561", - "references": [], "kit": null, "file": "data/addgene_plasmids/158561.addgene-full.gb" }, @@ -9409,7 +11713,10 @@ "plasmid_name": "pcDNA3.1_nV5-AMOTL1", "sequence-type": "addgene-full", "addgene_id": "172998", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172998.addgene-full.gb" }, @@ -9418,7 +11725,10 @@ "plasmid_name": "pDONR221_SLC6A5", "sequence-type": "addgene-full", "addgene_id": "132184", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132184.addgene-full.gb" }, @@ -9427,7 +11737,9 @@ "plasmid_name": "pLX317-CELF4", "sequence-type": "addgene-full", "addgene_id": "115445", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "file": "data/addgene_plasmids/115445.addgene-full.gb" }, @@ -9436,7 +11748,10 @@ "plasmid_name": "pDONR221-SLC22A25_STOP", "sequence-type": "depositor-full", "addgene_id": "161178", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161178.depositor-full.gb" }, @@ -9445,7 +11760,10 @@ "plasmid_name": "pDONR221_SLC33A1", "sequence-type": "addgene-full", "addgene_id": "132264", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132264.addgene-full.gb" }, @@ -9454,7 +11772,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir193b-3", "sequence-type": "depositor-full", "addgene_id": "46733", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46733.depositor-full.gb" }, @@ -9463,7 +11784,10 @@ "plasmid_name": "pLentiPGK Puro DEST JNKKTR EE Clover", "sequence-type": "addgene-full", "addgene_id": "90239", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "file": "data/addgene_plasmids/90239.addgene-full.gb" }, @@ -9472,7 +11796,6 @@ "plasmid_name": "g16t pDONR", "sequence-type": "addgene-full", "addgene_id": "117475", - "references": [], "kit": null, "file": "data/addgene_plasmids/117475.addgene-full.gb" }, @@ -9481,7 +11804,10 @@ "plasmid_name": "pDONR223_EIF2A_WT", "sequence-type": "addgene-full", "addgene_id": "82111", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82111.addgene-full.gb" }, @@ -9490,7 +11816,10 @@ "plasmid_name": "p8133 MSCV GFP Neo C-HA", "sequence-type": "addgene-full", "addgene_id": "184522", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184522.addgene-full.gb" }, @@ -9499,7 +11828,10 @@ "plasmid_name": "pDONR223_U2AF1_p.S34F", "sequence-type": "addgene-full", "addgene_id": "81358", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -9511,7 +11843,10 @@ "plasmid_name": "MAC_N_STAT4", "sequence-type": "addgene-full", "addgene_id": "167802", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167802.addgene-full.gb" }, @@ -9520,7 +11855,10 @@ "plasmid_name": "CLDN8_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176963", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176963.addgene-full.gb" }, @@ -9529,7 +11867,6 @@ "plasmid_name": "pDONR221-kcnj6", "sequence-type": "addgene-full", "addgene_id": "192725", - "references": [], "kit": null, "file": "data/addgene_plasmids/192725.addgene-full.gb" }, @@ -9538,7 +11875,10 @@ "plasmid_name": "pLgw EcoDam-V5-RFC1", "sequence-type": "depositor-full", "addgene_id": "59209", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "file": "data/addgene_plasmids/59209.depositor-full.gb" }, @@ -9547,7 +11887,10 @@ "plasmid_name": "RET-SHC", "sequence-type": "addgene-full", "addgene_id": "139617", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139617.addgene-full.gb" }, @@ -9556,7 +11899,10 @@ "plasmid_name": "pDONR221_SLC25A14", "sequence-type": "addgene-full", "addgene_id": "132050", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132050.addgene-full.gb" }, @@ -9565,7 +11911,10 @@ "plasmid_name": "GFP-CYLD-C601A", "sequence-type": "addgene-full", "addgene_id": "60028", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0703268104", + "https://www.ncbi.nlm.nih.gov/pubmed/17495026" + ], "kit": null, "file": "data/addgene_plasmids/60028.addgene-full.gb" }, @@ -9574,7 +11923,10 @@ "plasmid_name": "pENTREGFP2", "sequence-type": "addgene-full", "addgene_id": "22450", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/22450.addgene-full.gb" }, @@ -9583,7 +11935,10 @@ "plasmid_name": "pTORKm43GW", "sequence-type": "addgene-full", "addgene_id": "112897", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01516-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31575765" + ], "kit": null, "file": "data/addgene_plasmids/112897.addgene-full.gb" }, @@ -9592,7 +11947,10 @@ "plasmid_name": "pMpGE_En03-sgRNA_Target1 (Mpphot)", "sequence-type": "addgene-full", "addgene_id": "186726", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbrc.2018.06.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29885839" + ], "kit": null, "file": "data/addgene_plasmids/186726.addgene-full.gb" }, @@ -9601,7 +11959,10 @@ "plasmid_name": "MAC-ANPEP", "sequence-type": "addgene-full", "addgene_id": "172418", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172418.addgene-full.gb" }, @@ -9610,7 +11971,6 @@ "plasmid_name": "pEN_TT DNM1L-V5", "sequence-type": "addgene-full", "addgene_id": "220359", - "references": [], "kit": null, "file": "data/addgene_plasmids/220359.addgene-full.gb" }, @@ -9619,7 +11979,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS8", "sequence-type": "depositor-full", "addgene_id": "20247", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20247.depositor-full.gb" }, @@ -9628,7 +11991,10 @@ "plasmid_name": "pDONR223-RET", "sequence-type": "addgene-full", "addgene_id": "23906", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -9640,7 +12006,10 @@ "plasmid_name": "pbZIP9:GFP-GUS", "sequence-type": "addgene-full", "addgene_id": "172483", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koaa060", + "https://www.ncbi.nlm.nih.gov/pubmed/33955487" + ], "kit": null, "file": "data/addgene_plasmids/172483.addgene-full.gb" }, @@ -9649,7 +12018,9 @@ "plasmid_name": "pDONR221-LAP3", "sequence-type": "addgene-full", "addgene_id": "217660", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-4644671/v1" + ], "kit": null, "file": "data/addgene_plasmids/217660.addgene-full.gb" }, @@ -9658,7 +12029,10 @@ "plasmid_name": "pDEST40-Arl13b89", "sequence-type": "addgene-full", "addgene_id": "40874", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E10-12-0994", + "https://www.ncbi.nlm.nih.gov/pubmed/21976698" + ], "kit": null, "file": "data/addgene_plasmids/40874.addgene-full.gb" }, @@ -9667,7 +12041,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-GFP (gRNA: Ascl1-2)", "sequence-type": "addgene-full", "addgene_id": "159657", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/159657.addgene-full.gb" }, @@ -9676,7 +12053,6 @@ "plasmid_name": "pHAGE-CMV-Flag-BRSK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135279", - "references": [], "kit": null, "file": "data/addgene_plasmids/135279.addgene-full.gb" }, @@ -9685,7 +12061,6 @@ "plasmid_name": "pGP8G-ccdB", "sequence-type": "depositor-full", "addgene_id": "83884", - "references": [], "kit": null, "file": "data/addgene_plasmids/83884.depositor-full.gb" }, @@ -9694,7 +12069,6 @@ "plasmid_name": "pCM1.60", "sequence-type": "depositor-full", "addgene_id": "19594", - "references": [], "kit": null, "file": "data/addgene_plasmids/19594.depositor-full.gb" }, @@ -9703,7 +12077,6 @@ "plasmid_name": "IDG_KCNK12_OE_1", "sequence-type": "addgene-full", "addgene_id": "161632", - "references": [], "kit": null, "file": "data/addgene_plasmids/161632.addgene-full.gb" }, @@ -9712,7 +12085,10 @@ "plasmid_name": "pDAI-SceI-pheS", "sequence-type": "addgene-full", "addgene_id": "111611", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.03909-14", + "https://www.ncbi.nlm.nih.gov/pubmed/25795676" + ], "kit": null, "file": "data/addgene_plasmids/111611.addgene-full.gb" }, @@ -9721,7 +12097,10 @@ "plasmid_name": "765 pME nls mCerulean", "sequence-type": "addgene-full", "addgene_id": "195958", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195958.addgene-full.gb" }, @@ -9730,7 +12109,10 @@ "plasmid_name": "pLenti-CMV-Blast-PIP-FUCCI", "sequence-type": "addgene-full", "addgene_id": "138715", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "file": "data/addgene_plasmids/138715.addgene-full.gb" }, @@ -9739,7 +12121,10 @@ "plasmid_name": "pYPQ290-D977A", "sequence-type": "addgene-full", "addgene_id": "129674", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129674.addgene-full.gb" }, @@ -9748,7 +12133,10 @@ "plasmid_name": "p221z-CAS9p-TagRFP-t35s", "sequence-type": "addgene-full", "addgene_id": "118386", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "file": "data/addgene_plasmids/118386.addgene-full.gb" }, @@ -9757,7 +12145,10 @@ "plasmid_name": "pHAGE-FGFR4", "sequence-type": "addgene-full", "addgene_id": "116743", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116743.addgene-full.gb" }, @@ -9766,7 +12157,10 @@ "plasmid_name": "pHAGE-BRAF-K601N", "sequence-type": "addgene-full", "addgene_id": "116169", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116169.addgene-full.gb" }, @@ -9775,7 +12169,10 @@ "plasmid_name": "pYZ714", "sequence-type": "addgene-full", "addgene_id": "132955", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkaa329", + "https://www.ncbi.nlm.nih.gov/pubmed/32374858" + ], "kit": null, "file": "data/addgene_plasmids/132955.addgene-full.gb" }, @@ -9784,7 +12181,10 @@ "plasmid_name": "pAG424GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14319", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -9796,7 +12196,10 @@ "plasmid_name": "pGWB407", "sequence-type": "depositor-full", "addgene_id": "74801", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74801.depositor-full.gb" }, @@ -9805,7 +12208,6 @@ "plasmid_name": "pCW57.1", "sequence-type": "addgene-full", "addgene_id": "41393", - "references": [], "kit": null, "file": "data/addgene_plasmids/41393.addgene-full.gb" }, @@ -9814,7 +12216,9 @@ "plasmid_name": "pPB-cT3G-cERP2-ZCWPW1", "sequence-type": "addgene-full", "addgene_id": "222543", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222543.addgene-full.gb" }, @@ -9823,7 +12227,10 @@ "plasmid_name": "pDONR223_BCL6_WT", "sequence-type": "addgene-full", "addgene_id": "81869", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81869.addgene-full.gb" }, @@ -9832,7 +12239,10 @@ "plasmid_name": "KA901: pMVP (L3-L2) HA tag + pA; EF1a::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121804", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121804.addgene-full.gb" }, @@ -9841,7 +12251,10 @@ "plasmid_name": "ATX3-JD", "sequence-type": "addgene-full", "addgene_id": "184247", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "file": "data/addgene_plasmids/184247.addgene-full.gb" }, @@ -9850,7 +12263,6 @@ "plasmid_name": "R777-E046 Hs.E2F1-nostop", "sequence-type": "depositor-full", "addgene_id": "70330", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -9862,7 +12274,10 @@ "plasmid_name": "pMpGE_En03-gR085", "sequence-type": "addgene-full", "addgene_id": "188552", - "references": [], + "references": [ + "https://doi.org/10.5511/plantbiotechnology.22.0810a", + "https://www.ncbi.nlm.nih.gov/pubmed/37283617" + ], "kit": null, "file": "data/addgene_plasmids/188552.addgene-full.gb" }, @@ -9871,7 +12286,10 @@ "plasmid_name": "pCMU-TGN41r", "sequence-type": "depositor-full", "addgene_id": "61176", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61176.depositor-full.gb" }, @@ -9880,7 +12298,10 @@ "plasmid_name": "pGCS-C3m(3xFLAG)", "sequence-type": "addgene-full", "addgene_id": "85726", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -9892,7 +12313,10 @@ "plasmid_name": "pHAGE-EGFR-P848L", "sequence-type": "addgene-full", "addgene_id": "116289", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116289.addgene-full.gb" }, @@ -9901,7 +12325,10 @@ "plasmid_name": "pDONR221_SLC27A2", "sequence-type": "addgene-full", "addgene_id": "131867", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131867.addgene-full.gb" }, @@ -9910,7 +12337,10 @@ "plasmid_name": "TFORF3216", "sequence-type": "addgene-full", "addgene_id": "144692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144692.addgene-full.gb" }, @@ -9919,7 +12349,10 @@ "plasmid_name": "TFORF3450", "sequence-type": "addgene-full", "addgene_id": "144926", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144926.addgene-full.gb" }, @@ -9928,7 +12361,10 @@ "plasmid_name": "PRPF19", "sequence-type": "addgene-full", "addgene_id": "155847", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155847.addgene-full.gb" }, @@ -9937,7 +12373,10 @@ "plasmid_name": "pDONR221-MFSD4A_STOP", "sequence-type": "addgene-full", "addgene_id": "161083", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161083.addgene-full.gb" }, @@ -9946,7 +12385,9 @@ "plasmid_name": "nTALECD for_CYO1 exon1_1397NC", "sequence-type": "addgene-full", "addgene_id": "193376", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "file": "data/addgene_plasmids/193376.addgene-full.gb" }, @@ -9955,7 +12396,10 @@ "plasmid_name": "pDONR223_NKX2-1_Long", "sequence-type": "addgene-full", "addgene_id": "221471", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221471.addgene-full.gb" }, @@ -9964,7 +12408,9 @@ "plasmid_name": "pMpGWB129", "sequence-type": "depositor-full", "addgene_id": "68583", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68583.depositor-full.gb" }, @@ -9973,7 +12419,10 @@ "plasmid_name": "pDONR223_BCL6_WT", "sequence-type": "addgene-full", "addgene_id": "81746", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -9997,7 +12446,9 @@ "plasmid_name": "pME-3x-FLAG-Ubiquitin (JDW 1098)", "sequence-type": "addgene-full", "addgene_id": "224513", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224513.addgene-full.gb" }, @@ -10006,7 +12457,10 @@ "plasmid_name": "R620-M18-303: CMV51p> SARS-CoV-2 S-RBD(319-541)-His6 K417T/E484K/N501Y", "sequence-type": "addgene-full", "addgene_id": "170202", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/170202.addgene-full.gb" }, @@ -10015,7 +12469,10 @@ "plasmid_name": "pDONR221-SLC7A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161363", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161363.addgene-full.gb" }, @@ -10024,7 +12481,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-lin-4", "sequence-type": "depositor-full", "addgene_id": "46649", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46649.depositor-full.gb" }, @@ -10033,7 +12493,10 @@ "plasmid_name": "TFORF3096", "sequence-type": "addgene-full", "addgene_id": "144572", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144572.addgene-full.gb" }, @@ -10042,7 +12505,10 @@ "plasmid_name": "pcDNA 3.2-FUS-1-526aa-V5", "sequence-type": "addgene-full", "addgene_id": "29609", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.1000614", + "https://www.ncbi.nlm.nih.gov/pubmed/21541367" + ], "kit": null, "file": "data/addgene_plasmids/29609.addgene-full.gb" }, @@ -10051,7 +12517,10 @@ "plasmid_name": "pAG413GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14357", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -10063,7 +12532,10 @@ "plasmid_name": "pDONR223_BAP1_p.N299S", "sequence-type": "addgene-full", "addgene_id": "81572", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -10075,7 +12547,10 @@ "plasmid_name": "TFORF3270", "sequence-type": "addgene-full", "addgene_id": "144746", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144746.addgene-full.gb" }, @@ -10084,7 +12559,10 @@ "plasmid_name": "p3E-rab11a", "sequence-type": "addgene-full", "addgene_id": "109662", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109662.addgene-full.gb" }, @@ -10093,7 +12571,6 @@ "plasmid_name": "pENTR223 Rab11A S25N-STOP", "sequence-type": "addgene-full", "addgene_id": "228032", - "references": [], "kit": null, "file": "data/addgene_plasmids/228032.addgene-full.gb" }, @@ -10102,7 +12579,6 @@ "plasmid_name": "pME-TA", "sequence-type": "depositor-full", "addgene_id": "49337", - "references": [], "kit": null, "file": "data/addgene_plasmids/49337.depositor-full.gb" }, @@ -10111,7 +12587,10 @@ "plasmid_name": "pAdCMV/V5-DEST-STAT3C-3xFlag", "sequence-type": "addgene-full", "addgene_id": "99264", - "references": [], + "references": [ + "https://doi.org/10.1152/ajpcell.00235.2017", + "https://www.ncbi.nlm.nih.gov/pubmed/29351406" + ], "kit": null, "file": "data/addgene_plasmids/99264.addgene-full.gb" }, @@ -10120,7 +12599,10 @@ "plasmid_name": "pDONR223-ZNF232", "sequence-type": "addgene-full", "addgene_id": "88305", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88305.addgene-full.gb" }, @@ -10129,7 +12611,10 @@ "plasmid_name": "p3E-Rac1-DN", "sequence-type": "addgene-full", "addgene_id": "109582", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109582.addgene-full.gb" }, @@ -10138,7 +12623,10 @@ "plasmid_name": "p8552 pLIX-PTPN14 \u0394PPXY3/4", "sequence-type": "addgene-full", "addgene_id": "221645", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "file": "data/addgene_plasmids/221645.addgene-full.gb" }, @@ -10147,7 +12635,10 @@ "plasmid_name": "5'-3xFLAG Mllt1+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212067", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212067.addgene-full.gb" }, @@ -10156,7 +12647,10 @@ "plasmid_name": "pDONR223_EGFR_WT", "sequence-type": "addgene-full", "addgene_id": "81926", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -10168,7 +12662,10 @@ "plasmid_name": "RNF6_pLX307", "sequence-type": "addgene-full", "addgene_id": "98366", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98366.addgene-full.gb" }, @@ -10177,7 +12674,6 @@ "plasmid_name": "pDest-566", "sequence-type": "addgene-full", "addgene_id": "11517", - "references": [], "kit": null, "file": "data/addgene_plasmids/11517.addgene-full.gb" }, @@ -10186,7 +12682,10 @@ "plasmid_name": "pDONR223_TRIM55_p.R322H", "sequence-type": "addgene-full", "addgene_id": "81609", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -10198,7 +12697,6 @@ "plasmid_name": "R777-E335 Hs.STK11", "sequence-type": "depositor-full", "addgene_id": "70619", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -10210,7 +12708,6 @@ "plasmid_name": "Hs.HRAS G12D", "sequence-type": "depositor-full", "addgene_id": "83183", - "references": [], "kit": null, "file": "data/addgene_plasmids/83183.depositor-full.gb" }, @@ -10219,7 +12716,10 @@ "plasmid_name": "pGL3-MTS-G3635A-R16-FZY2-S100C-UGI-Puro", "sequence-type": "addgene-full", "addgene_id": "209643", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-42359-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37857619" + ], "kit": null, "file": "data/addgene_plasmids/209643.addgene-full.gb" }, @@ -10228,7 +12728,10 @@ "plasmid_name": "actc1b-mKate2-Dnm2a", "sequence-type": "addgene-full", "addgene_id": "109519", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109519.addgene-full.gb" }, @@ -10237,7 +12740,10 @@ "plasmid_name": "pDONR221_MFSD11", "sequence-type": "addgene-full", "addgene_id": "131928", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131928.addgene-full.gb" }, @@ -10246,7 +12752,6 @@ "plasmid_name": "pGENT_GW_aco_mScarlet3", "sequence-type": "addgene-full", "addgene_id": "225991", - "references": [], "kit": null, "file": "data/addgene_plasmids/225991.addgene-full.gb" }, @@ -10255,7 +12760,10 @@ "plasmid_name": "eA3Ai-max", "sequence-type": "addgene-full", "addgene_id": "207166", - "references": [], + "references": [ + "https://doi.org/10.1089/crispr.2023.0027", + "https://www.ncbi.nlm.nih.gov/pubmed/37672599" + ], "kit": null, "file": "data/addgene_plasmids/207166.addgene-full.gb" }, @@ -10264,7 +12772,10 @@ "plasmid_name": "TFORF3393", "sequence-type": "addgene-full", "addgene_id": "144869", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144869.addgene-full.gb" }, @@ -10273,7 +12784,10 @@ "plasmid_name": "pCM5.60", "sequence-type": "depositor-full", "addgene_id": "19374", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19374.depositor-full.gb" }, @@ -10282,7 +12796,10 @@ "plasmid_name": "pMXs-ms-Klf2", "sequence-type": "depositor-full", "addgene_id": "50786", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "file": "data/addgene_plasmids/50786.depositor-full.gb" }, @@ -10291,7 +12808,10 @@ "plasmid_name": "pDONR223_MAPK7_p.T28I", "sequence-type": "addgene-full", "addgene_id": "82814", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82814.addgene-full.gb" }, @@ -10300,7 +12820,10 @@ "plasmid_name": "p5E-6xgata2aECEbasp", "sequence-type": "addgene-full", "addgene_id": "132968", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132968.addgene-full.gb" }, @@ -10309,7 +12832,10 @@ "plasmid_name": "pHAGE-BRAF-G469E", "sequence-type": "addgene-full", "addgene_id": "116154", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116154.addgene-full.gb" }, @@ -10318,7 +12844,10 @@ "plasmid_name": "pDONR223_EYS_WT", "sequence-type": "addgene-full", "addgene_id": "81854", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -10330,7 +12859,6 @@ "plasmid_name": "pCWXPGR-pTF-Kir2.1", "sequence-type": "addgene-full", "addgene_id": "114284", - "references": [], "kit": null, "file": "data/addgene_plasmids/114284.addgene-full.gb" }, @@ -10339,7 +12867,10 @@ "plasmid_name": "pDONR223_TP53_p.M246R", "sequence-type": "addgene-full", "addgene_id": "81400", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -10351,7 +12882,10 @@ "plasmid_name": "pEPYCdKN0011", "sequence-type": "addgene-full", "addgene_id": "196152", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196152.addgene-full.gb" }, @@ -10360,7 +12894,10 @@ "plasmid_name": "pAAV-rBrokenheart", "sequence-type": "addgene-full", "addgene_id": "203394", - "references": [], + "references": [ + "https://doi.org/10.1002/cpz1.883", + "https://www.ncbi.nlm.nih.gov/pubmed/37755132" + ], "kit": null, "file": "data/addgene_plasmids/203394.addgene-full.gb" }, @@ -10369,7 +12906,10 @@ "plasmid_name": "KL301: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS-p300core", "sequence-type": "addgene-full", "addgene_id": "121839", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121839.addgene-full.gb" }, @@ -10378,7 +12918,10 @@ "plasmid_name": "pYPQ151", "sequence-type": "depositor-full", "addgene_id": "69302", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69302.depositor-full.gb" }, @@ -10387,7 +12930,10 @@ "plasmid_name": "TFORF3504", "sequence-type": "addgene-full", "addgene_id": "144980", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144980.addgene-full.gb" }, @@ -10396,7 +12942,9 @@ "plasmid_name": "pDONR221-GNMT", "sequence-type": "addgene-full", "addgene_id": "166177", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166177.addgene-full.gb" }, @@ -10405,7 +12953,10 @@ "plasmid_name": "p3E-rab42a", "sequence-type": "addgene-full", "addgene_id": "109710", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109710.addgene-full.gb" }, @@ -10414,7 +12965,10 @@ "plasmid_name": "TFORF3158", "sequence-type": "addgene-full", "addgene_id": "144634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144634.addgene-full.gb" }, @@ -10423,7 +12977,10 @@ "plasmid_name": "pDEST 527-XERICO", "sequence-type": "addgene-full", "addgene_id": "118671", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118671.addgene-full.gb" }, @@ -10432,7 +12989,10 @@ "plasmid_name": "pME-TagBFP2-NS", "sequence-type": "addgene-full", "addgene_id": "80502", - "references": [], + "references": [ + "https://doi.org/10.1080/21592799.2017.1301151", + "https://www.ncbi.nlm.nih.gov/pubmed/28396820" + ], "kit": null, "file": "data/addgene_plasmids/80502.addgene-full.gb" }, @@ -10441,7 +13001,10 @@ "plasmid_name": "pDONR-IAA16", "sequence-type": "depositor-full", "addgene_id": "83854", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83854.depositor-full.gb" }, @@ -10450,7 +13013,10 @@ "plasmid_name": "KP101: pMVP (L5-L4) Puro-P2A", "sequence-type": "addgene-full", "addgene_id": "121716", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121716.addgene-full.gb" }, @@ -10459,7 +13025,10 @@ "plasmid_name": "pDONR223_MTERFD1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82966", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82966.addgene-full.gb" }, @@ -10468,7 +13037,10 @@ "plasmid_name": "AAEL006283 MS R", "sequence-type": "addgene-full", "addgene_id": "115386", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115386.addgene-full.gb" }, @@ -10477,7 +13049,10 @@ "plasmid_name": "pEN_TT 3xFLAG-KPNA2", "sequence-type": "addgene-full", "addgene_id": "192306", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192306.addgene-full.gb" }, @@ -10486,7 +13061,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf7b", "sequence-type": "addgene-full", "addgene_id": "158376", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158376.addgene-full.gb" }, @@ -10495,7 +13073,10 @@ "plasmid_name": "pINDUCER22-MKK6E-Flag", "sequence-type": "addgene-full", "addgene_id": "99259", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0161975", + "https://www.ncbi.nlm.nih.gov/pubmed/27603666" + ], "kit": null, "file": "data/addgene_plasmids/99259.addgene-full.gb" }, @@ -10504,7 +13085,6 @@ "plasmid_name": "pLPC-C-SF-TAP-DEST-TLK1- Q479E", "sequence-type": "addgene-full", "addgene_id": "218830", - "references": [], "kit": null, "file": "data/addgene_plasmids/218830.addgene-full.gb" }, @@ -10513,7 +13093,10 @@ "plasmid_name": "GFP-UBR5", "sequence-type": "addgene-full", "addgene_id": "52050", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.039", + "https://www.ncbi.nlm.nih.gov/pubmed/22884692" + ], "kit": null, "file": "data/addgene_plasmids/52050.addgene-full.gb" }, @@ -10522,7 +13105,10 @@ "plasmid_name": "pDEST-CMV-C-EGFP", "sequence-type": "addgene-full", "addgene_id": "122844", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/122844.addgene-full.gb" }, @@ -10531,7 +13117,10 @@ "plasmid_name": "pDONR221-SLC19A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161211", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161211.addgene-full.gb" }, @@ -10540,7 +13129,10 @@ "plasmid_name": "pKLV-gRNA-Bcan-Ntrk1_4", "sequence-type": "addgene-full", "addgene_id": "136413", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03731-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29654229" + ], "kit": null, "file": "data/addgene_plasmids/136413.addgene-full.gb" }, @@ -10549,7 +13141,10 @@ "plasmid_name": "pDONR221-kcnj11", "sequence-type": "addgene-full", "addgene_id": "173139", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173139.addgene-full.gb" }, @@ -10558,7 +13153,10 @@ "plasmid_name": "pDONR223_OR2M2_p.E232V", "sequence-type": "addgene-full", "addgene_id": "81634", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -10570,7 +13168,10 @@ "plasmid_name": "EDC3", "sequence-type": "addgene-full", "addgene_id": "155561", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155561.addgene-full.gb" }, @@ -10579,7 +13180,10 @@ "plasmid_name": "actc1b-CD44b-mKate2", "sequence-type": "addgene-full", "addgene_id": "109524", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109524.addgene-full.gb" }, @@ -10588,7 +13192,10 @@ "plasmid_name": "pHAGE-ERBB3-D297Y", "sequence-type": "addgene-full", "addgene_id": "116360", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116360.addgene-full.gb" }, @@ -10597,7 +13204,10 @@ "plasmid_name": "TFORF3378", "sequence-type": "addgene-full", "addgene_id": "144854", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144854.addgene-full.gb" }, @@ -10606,7 +13216,10 @@ "plasmid_name": "p221z-erVenusYFP", "sequence-type": "depositor-full", "addgene_id": "71265", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71265.depositor-full.gb" }, @@ -10615,7 +13228,10 @@ "plasmid_name": "INTS6", "sequence-type": "addgene-full", "addgene_id": "155681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155681.addgene-full.gb" }, @@ -10624,7 +13240,10 @@ "plasmid_name": "pDONR221_SLC6A8", "sequence-type": "addgene-full", "addgene_id": "131915", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131915.addgene-full.gb" }, @@ -10633,7 +13252,6 @@ "plasmid_name": "pUbi_dCas9-BFP-KRAB-gRNA", "sequence-type": "addgene-full", "addgene_id": "221503", - "references": [], "kit": null, "file": "data/addgene_plasmids/221503.addgene-full.gb" }, @@ -10642,7 +13260,10 @@ "plasmid_name": "pEBTetBl-CLIP-CCCAP", "sequence-type": "addgene-full", "addgene_id": "136847", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136847.addgene-full.gb" }, @@ -10651,7 +13272,10 @@ "plasmid_name": "pBTM116-D9", "sequence-type": "addgene-full", "addgene_id": "111232", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-61779-455-1_4", + "https://www.ncbi.nlm.nih.gov/pubmed/22218854" + ], "kit": null, "file": "data/addgene_plasmids/111232.addgene-full.gb" }, @@ -10660,7 +13284,10 @@ "plasmid_name": "pDONR223_SMAD4_p.P215S", "sequence-type": "addgene-full", "addgene_id": "82829", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82829.addgene-full.gb" }, @@ -10669,7 +13296,10 @@ "plasmid_name": "pRU322", "sequence-type": "addgene-full", "addgene_id": "167683", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167683.addgene-full.gb" }, @@ -10678,7 +13308,6 @@ "plasmid_name": "p663-UBC-ER-TurboID-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214453", - "references": [], "kit": null, "file": "data/addgene_plasmids/214453.addgene-full.gb" }, @@ -10687,7 +13316,6 @@ "plasmid_name": "pME tdTomato No stop (for 5' tagging)", "sequence-type": "addgene-full", "addgene_id": "135203", - "references": [], "kit": null, "file": "data/addgene_plasmids/135203.addgene-full.gb" }, @@ -10696,7 +13324,6 @@ "plasmid_name": "IDG_CHRNA2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161648", - "references": [], "kit": null, "file": "data/addgene_plasmids/161648.addgene-full.gb" }, @@ -10705,7 +13332,6 @@ "plasmid_name": "pLEX305_3xFLAG_STAT1", "sequence-type": "addgene-full", "addgene_id": "220323", - "references": [], "kit": null, "file": "data/addgene_plasmids/220323.addgene-full.gb" }, @@ -10714,7 +13340,10 @@ "plasmid_name": "pDEST-CMV mCherry-GFP-LC3B WT", "sequence-type": "addgene-full", "addgene_id": "123230", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123230.addgene-full.gb" }, @@ -10723,7 +13352,6 @@ "plasmid_name": "R777-E347 Hs.TIAM1", "sequence-type": "depositor-full", "addgene_id": "70631", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -10735,7 +13363,10 @@ "plasmid_name": "pWZL Neo Myr Flag AKAP8L", "sequence-type": "addgene-full", "addgene_id": "20481", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20481.addgene-full.gb" }, @@ -10744,7 +13375,10 @@ "plasmid_name": "pMx/ATP8B2-HA", "sequence-type": "addgene-full", "addgene_id": "209227", - "references": [], + "references": [ + "https://doi.org/10.1080/10985549.2024.2391829", + "https://www.ncbi.nlm.nih.gov/pubmed/39219493" + ], "kit": null, "file": "data/addgene_plasmids/209227.addgene-full.gb" }, @@ -10753,7 +13387,10 @@ "plasmid_name": "TOE1", "sequence-type": "addgene-full", "addgene_id": "156091", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156091.addgene-full.gb" }, @@ -10762,7 +13399,10 @@ "plasmid_name": "pLG327", "sequence-type": "addgene-full", "addgene_id": "128797", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-019-0412-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31792444" + ], "kit": null, "file": "data/addgene_plasmids/128797.addgene-full.gb" }, @@ -10771,7 +13411,10 @@ "plasmid_name": "pHAGE-FAM58A", "sequence-type": "addgene-full", "addgene_id": "116739", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116739.addgene-full.gb" }, @@ -10780,7 +13423,6 @@ "plasmid_name": "pLEX307-APN-puro", "sequence-type": "addgene-full", "addgene_id": "158454", - "references": [], "kit": null, "file": "data/addgene_plasmids/158454.addgene-full.gb" }, @@ -10789,7 +13431,10 @@ "plasmid_name": "R989-X29-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12V", "sequence-type": "addgene-full", "addgene_id": "159556", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159556.addgene-full.gb" }, @@ -10798,7 +13443,10 @@ "plasmid_name": "pHAGE-ERGIC1__RANBP17", "sequence-type": "addgene-full", "addgene_id": "116816", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116816.addgene-full.gb" }, @@ -10807,7 +13455,10 @@ "plasmid_name": "Flag-GFP11-pDEST-C", "sequence-type": "addgene-full", "addgene_id": "118367", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118367.addgene-full.gb" }, @@ -10816,7 +13467,10 @@ "plasmid_name": "pGWB525", "sequence-type": "depositor-full", "addgene_id": "74867", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74867.depositor-full.gb" }, @@ -10825,7 +13479,10 @@ "plasmid_name": "p6346 MSCV-CMV-Flag-HA-Brd4-1-444", "sequence-type": "addgene-full", "addgene_id": "32886", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.01341-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21555454" + ], "kit": null, "file": "data/addgene_plasmids/32886.addgene-full.gb" }, @@ -10834,7 +13491,10 @@ "plasmid_name": "pHAGE-NOTCH2NL-S165F", "sequence-type": "addgene-full", "addgene_id": "116442", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116442.addgene-full.gb" }, @@ -10843,7 +13503,10 @@ "plasmid_name": "pSGE_530_S2-1-CGCG_dCP", "sequence-type": "depositor-full", "addgene_id": "71154", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71154.depositor-full.gb" }, @@ -10852,7 +13515,10 @@ "plasmid_name": "pAFW-Ago1", "sequence-type": "depositor-full", "addgene_id": "50553", - "references": [], + "references": [ + "https://doi.org/10.1038/nsmb.1630", + "https://www.ncbi.nlm.nih.gov/pubmed/19684602" + ], "kit": null, "file": "data/addgene_plasmids/50553.depositor-full.gb" }, @@ -10861,7 +13527,6 @@ "plasmid_name": "pDONR2T18ms", "sequence-type": "depositor-full", "addgene_id": "72645", - "references": [], "kit": null, "file": "data/addgene_plasmids/72645.depositor-full.gb" }, @@ -10870,7 +13535,10 @@ "plasmid_name": "pYZ463", "sequence-type": "addgene-full", "addgene_id": "187971", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkad491", + "https://www.ncbi.nlm.nih.gov/pubmed/37326023" + ], "kit": null, "file": "data/addgene_plasmids/187971.addgene-full.gb" }, @@ -10879,7 +13547,6 @@ "plasmid_name": "R777-E072 Hs.EXOC3-nostop", "sequence-type": "depositor-full", "addgene_id": "70356", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -10891,7 +13558,10 @@ "plasmid_name": "ADD1", "sequence-type": "addgene-full", "addgene_id": "155397", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155397.addgene-full.gb" }, @@ -10900,7 +13570,10 @@ "plasmid_name": "pHAGE-SIRPB1-D198N", "sequence-type": "addgene-full", "addgene_id": "116676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116676.addgene-full.gb" }, @@ -10909,7 +13582,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RIOK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170586", - "references": [], "kit": null, "file": "data/addgene_plasmids/170586.addgene-full.gb" }, @@ -10918,7 +13590,10 @@ "plasmid_name": "pLenti GW V5 Eco/Dam hum LaminA", "sequence-type": "addgene-full", "addgene_id": "182673", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.141028.112", + "https://www.ncbi.nlm.nih.gov/pubmed/23124521" + ], "kit": null, "file": "data/addgene_plasmids/182673.addgene-full.gb" }, @@ -10927,7 +13602,10 @@ "plasmid_name": "pDONR223_CD79B_p.H194N", "sequence-type": "addgene-full", "addgene_id": "81322", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -10939,7 +13617,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-240", "sequence-type": "depositor-full", "addgene_id": "46661", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46661.depositor-full.gb" }, @@ -10948,7 +13629,10 @@ "plasmid_name": "pHAGE-PIK3R1-K379E", "sequence-type": "addgene-full", "addgene_id": "116596", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116596.addgene-full.gb" }, @@ -10957,7 +13641,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-ZNF746", "sequence-type": "addgene-full", "addgene_id": "207819", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207819.addgene-full.gb" }, @@ -10966,7 +13653,10 @@ "plasmid_name": "pCOBL-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209368", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209368.addgene-full.gb" }, @@ -10975,7 +13665,10 @@ "plasmid_name": "pDONR221_SPNS3", "sequence-type": "addgene-full", "addgene_id": "132285", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132285.addgene-full.gb" }, @@ -10984,7 +13677,10 @@ "plasmid_name": "p6622 MSCV-P C HA GLTSCR", "sequence-type": "addgene-full", "addgene_id": "34902", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1116776109", + "https://www.ncbi.nlm.nih.gov/pubmed/22232672" + ], "kit": null, "file": "data/addgene_plasmids/34902.addgene-full.gb" }, @@ -10993,7 +13689,6 @@ "plasmid_name": "R777-E198 Hs.PRKAB2-nostop", "sequence-type": "depositor-full", "addgene_id": "70482", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -11005,7 +13700,10 @@ "plasmid_name": "MAC_N_FEV", "sequence-type": "addgene-full", "addgene_id": "167757", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167757.addgene-full.gb" }, @@ -11014,7 +13712,10 @@ "plasmid_name": "pGWB443", "sequence-type": "depositor-full", "addgene_id": "74829", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74829.depositor-full.gb" }, @@ -11023,7 +13724,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-KD", "sequence-type": "addgene-full", "addgene_id": "140296", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140296.addgene-full.gb" }, @@ -11032,7 +13736,10 @@ "plasmid_name": "pAG306GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14331", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -11044,7 +13751,10 @@ "plasmid_name": "VPS26C_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176982", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176982.addgene-full.gb" }, @@ -11053,7 +13763,10 @@ "plasmid_name": "pGC236", "sequence-type": "depositor-full", "addgene_id": "19675", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19675.depositor-full.gb" }, @@ -11062,7 +13775,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF6", "sequence-type": "addgene-full", "addgene_id": "169392", - "references": [], "kit": null, "file": "data/addgene_plasmids/169392.addgene-full.gb" }, @@ -11071,7 +13783,10 @@ "plasmid_name": "Flag-HA-UCHL5", "sequence-type": "addgene-full", "addgene_id": "22565", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22565.addgene-full.gb" }, @@ -11080,7 +13795,10 @@ "plasmid_name": "pT2-cryR;snx5CE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90138", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90138.addgene-full.gb" }, @@ -11089,7 +13807,10 @@ "plasmid_name": "pDONR223_FH_WT", "sequence-type": "addgene-full", "addgene_id": "82210", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82210.addgene-full.gb" }, @@ -11098,7 +13819,10 @@ "plasmid_name": "C453-E25: attB4-mPol2p>-attB5", "sequence-type": "addgene-full", "addgene_id": "162981", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -11110,7 +13834,10 @@ "plasmid_name": "pAAV_MLP-BC0252-luc2", "sequence-type": "addgene-full", "addgene_id": "214667", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214667.addgene-full.gb" }, @@ -11119,7 +13846,10 @@ "plasmid_name": "Silene_conica _GlnRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202654", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "file": "data/addgene_plasmids/202654.addgene-full.gb" }, @@ -11128,7 +13858,6 @@ "plasmid_name": "R777-E034 Hs.DUSP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70318", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -11140,7 +13869,6 @@ "plasmid_name": "His8:MBP-tev-Asp-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83389", - "references": [], "kit": null, "file": "data/addgene_plasmids/83389.addgene-full.gb" }, @@ -11149,7 +13877,10 @@ "plasmid_name": "pSBDEST.IP", "sequence-type": "addgene-full", "addgene_id": "79472", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79472.addgene-full.gb" }, @@ -11158,7 +13889,10 @@ "plasmid_name": "pINDUCER21-puro_TAOK2", "sequence-type": "addgene-full", "addgene_id": "172979", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172979.addgene-full.gb" }, @@ -11167,7 +13901,10 @@ "plasmid_name": "TFORF3528", "sequence-type": "depositor-full", "addgene_id": "145004", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145004.depositor-full.gb" }, @@ -11176,7 +13913,10 @@ "plasmid_name": "pDONR221_SLC39A7", "sequence-type": "addgene-full", "addgene_id": "132165", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132165.addgene-full.gb" }, @@ -11185,7 +13925,6 @@ "plasmid_name": "IDG_CNGA4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161675", - "references": [], "kit": null, "file": "data/addgene_plasmids/161675.addgene-full.gb" }, @@ -11194,7 +13933,10 @@ "plasmid_name": "666 pME-Lnx-1", "sequence-type": "depositor-full", "addgene_id": "49006", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49006.depositor-full.gb" }, @@ -11203,7 +13945,10 @@ "plasmid_name": "pDEST47-CYFIP2.GFP", "sequence-type": "addgene-full", "addgene_id": "109140", - "references": [], + "references": [ + "https://doi.org/10.1038/tp.2014.16", + "https://www.ncbi.nlm.nih.gov/pubmed/24667445" + ], "kit": null, "file": "data/addgene_plasmids/109140.addgene-full.gb" }, @@ -11212,7 +13957,10 @@ "plasmid_name": "pcDNA5 rtTA BirA eIF4G", "sequence-type": "addgene-full", "addgene_id": "158789", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2020.01.006", + "https://www.ncbi.nlm.nih.gov/pubmed/31999954" + ], "kit": null, "file": "data/addgene_plasmids/158789.addgene-full.gb" }, @@ -11221,7 +13969,6 @@ "plasmid_name": "pLEX307-CTSS-puro", "sequence-type": "addgene-full", "addgene_id": "158469", - "references": [], "kit": null, "file": "data/addgene_plasmids/158469.addgene-full.gb" }, @@ -11230,7 +13977,10 @@ "plasmid_name": "pCMB-TMEg", "sequence-type": "depositor-full", "addgene_id": "61209", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61209.depositor-full.gb" }, @@ -11239,7 +13989,10 @@ "plasmid_name": "pYPQ269D", "sequence-type": "addgene-full", "addgene_id": "164717", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164717.addgene-full.gb" }, @@ -11248,7 +14001,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term PML", "sequence-type": "addgene-full", "addgene_id": "187583", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187583.addgene-full.gb" }, @@ -11257,7 +14013,10 @@ "plasmid_name": "TU#1448_unc-73b_cDNA", "sequence-type": "addgene-full", "addgene_id": "82362", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1607179113", + "https://www.ncbi.nlm.nih.gov/pubmed/27274054" + ], "kit": null, "file": "data/addgene_plasmids/82362.addgene-full.gb" }, @@ -11266,7 +14025,10 @@ "plasmid_name": "pLX_TRC311 ETV4-S", "sequence-type": "depositor-full", "addgene_id": "74983", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/28178529" + ], "kit": null, "file": "data/addgene_plasmids/74983.depositor-full.gb" }, @@ -11275,7 +14037,6 @@ "plasmid_name": "R777-E244 Hs.RASGRP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70528", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -11287,7 +14048,10 @@ "plasmid_name": "pENTR221-WNT3", "sequence-type": "addgene-full", "addgene_id": "79500", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79500.addgene-full.gb" }, @@ -11296,7 +14060,10 @@ "plasmid_name": "pDONR221_SLC25A35", "sequence-type": "addgene-full", "addgene_id": "132017", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132017.addgene-full.gb" }, @@ -11305,7 +14072,10 @@ "plasmid_name": "pCPP6450", "sequence-type": "addgene-full", "addgene_id": "128731", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2015.05.007", + "https://www.ncbi.nlm.nih.gov/pubmed/26067603" + ], "kit": null, "file": "data/addgene_plasmids/128731.addgene-full.gb" }, @@ -11314,7 +14084,10 @@ "plasmid_name": "pAG303-Gal-GR100", "sequence-type": "depositor-full", "addgene_id": "84908", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "file": "data/addgene_plasmids/84908.depositor-full.gb" }, @@ -11323,7 +14096,10 @@ "plasmid_name": "SR140", "sequence-type": "addgene-full", "addgene_id": "156037", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156037.addgene-full.gb" }, @@ -11332,7 +14108,10 @@ "plasmid_name": "pDEST-Myc-FBW7K404/412/R", "sequence-type": "addgene-full", "addgene_id": "200716", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "file": "data/addgene_plasmids/200716.addgene-full.gb" }, @@ -11341,7 +14120,10 @@ "plasmid_name": "AAEL008296 CCAP R", "sequence-type": "addgene-full", "addgene_id": "115402", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115402.addgene-full.gb" }, @@ -11350,7 +14132,10 @@ "plasmid_name": "pENTR-L3-SpCas9-HF4-2A-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141049", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141049.addgene-full.gb" }, @@ -11359,7 +14144,10 @@ "plasmid_name": "TERT - WT", "sequence-type": "addgene-full", "addgene_id": "213827", - "references": [], + "references": [ + "https://doi.org/10.1182/blood.2021011075", + "https://www.ncbi.nlm.nih.gov/pubmed/34019641" + ], "kit": null, "file": "data/addgene_plasmids/213827.addgene-full.gb" }, @@ -11368,7 +14156,10 @@ "plasmid_name": "C413-E36: attB4-CMV51p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162927", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -11380,7 +14171,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP II (AA 1-87)", "sequence-type": "addgene-full", "addgene_id": "119317", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119317.addgene-full.gb" }, @@ -11389,7 +14183,10 @@ "plasmid_name": "pKH143_EGFP-YIPF3 LIR mut", "sequence-type": "addgene-full", "addgene_id": "214975", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "file": "data/addgene_plasmids/214975.addgene-full.gb" }, @@ -11398,7 +14195,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS1", "sequence-type": "addgene-full", "addgene_id": "145352", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145352.addgene-full.gb" }, @@ -11407,7 +14207,6 @@ "plasmid_name": "deltaUBA-short-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "195404", - "references": [], "kit": null, "file": "data/addgene_plasmids/195404.addgene-full.gb" }, @@ -11416,7 +14215,10 @@ "plasmid_name": "pTORGm43GWF", "sequence-type": "addgene-full", "addgene_id": "112904", - "references": [], + "references": [ + "https://doi.org/10.1186/s12866-019-1642-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31775609" + ], "kit": null, "file": "data/addgene_plasmids/112904.addgene-full.gb" }, @@ -11425,7 +14227,10 @@ "plasmid_name": "pDONR223_PRKACG_WT", "sequence-type": "addgene-full", "addgene_id": "82156", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82156.addgene-full.gb" }, @@ -11434,7 +14239,10 @@ "plasmid_name": "pLCS101", "sequence-type": "addgene-full", "addgene_id": "209355", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209355.addgene-full.gb" }, @@ -11443,7 +14251,10 @@ "plasmid_name": "pDONR221_SLC9B1", "sequence-type": "addgene-full", "addgene_id": "132223", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132223.addgene-full.gb" }, @@ -11452,7 +14263,6 @@ "plasmid_name": "R777-E282 Hs.RHOC-nostop", "sequence-type": "depositor-full", "addgene_id": "70566", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -11464,7 +14274,9 @@ "plasmid_name": "Pinducer20-dCas9-SunTag-2A-BFP", "sequence-type": "addgene-full", "addgene_id": "115779", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30097071" + ], "kit": null, "file": "data/addgene_plasmids/115779.addgene-full.gb" }, @@ -11473,7 +14285,10 @@ "plasmid_name": "pHAGE-PIK3CA-Q546R", "sequence-type": "addgene-full", "addgene_id": "116530", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116530.addgene-full.gb" }, @@ -11482,7 +14297,10 @@ "plasmid_name": "pDONR223-FLT3", "sequence-type": "addgene-full", "addgene_id": "23895", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -11494,7 +14312,10 @@ "plasmid_name": "pCFJ2441 - [1-2] ENTR - Fluor - ce-Dendra2(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159870", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159870.addgene-full.gb" }, @@ -11503,7 +14324,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP1 124A/125A", "sequence-type": "addgene-full", "addgene_id": "164523", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.10.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33080218" + ], "kit": null, "file": "data/addgene_plasmids/164523.addgene-full.gb" }, @@ -11512,7 +14336,10 @@ "plasmid_name": "pDONR223_IKZF5_p.E135K", "sequence-type": "addgene-full", "addgene_id": "81384", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -11524,7 +14351,10 @@ "plasmid_name": "pDEST15-Eps8L2_181-299", "sequence-type": "addgene-full", "addgene_id": "196536", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196536.addgene-full.gb" }, @@ -11533,7 +14363,10 @@ "plasmid_name": "pLX311 HRAS", "sequence-type": "addgene-full", "addgene_id": "117749", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117749.addgene-full.gb" }, @@ -11542,7 +14375,10 @@ "plasmid_name": "Flag-HA-PSMD7", "sequence-type": "addgene-full", "addgene_id": "22558", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22558.addgene-full.gb" }, @@ -11551,7 +14387,10 @@ "plasmid_name": "pDONR221-SLC39A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161441", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161441.addgene-full.gb" }, @@ -11560,7 +14399,10 @@ "plasmid_name": "pENTR/D-Topo CDS A. thaliana IMPORTIN ALPHA 2", "sequence-type": "addgene-full", "addgene_id": "175816", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12691", + "https://www.ncbi.nlm.nih.gov/pubmed/25284001" + ], "kit": null, "file": "data/addgene_plasmids/175816.addgene-full.gb" }, @@ -11569,7 +14411,10 @@ "plasmid_name": "pXL-BacII-CAG-loxP-STOP-loxP-Venus", "sequence-type": "addgene-full", "addgene_id": "170520", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.4105", + "https://www.ncbi.nlm.nih.gov/pubmed/34458399" + ], "kit": null, "file": "data/addgene_plasmids/170520.addgene-full.gb" }, @@ -11578,7 +14423,10 @@ "plasmid_name": "pWS486", "sequence-type": "addgene-full", "addgene_id": "123039", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123039.addgene-full.gb" }, @@ -11587,7 +14435,10 @@ "plasmid_name": "pDONR221_SLC5A3", "sequence-type": "addgene-full", "addgene_id": "132158", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132158.addgene-full.gb" }, @@ -11596,7 +14447,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-V12-neo", "sequence-type": "addgene-full", "addgene_id": "156178", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156178.addgene-full.gb" }, @@ -11605,7 +14459,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp6", "sequence-type": "addgene-full", "addgene_id": "168848", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168848.addgene-full.gb" }, @@ -11614,7 +14471,6 @@ "plasmid_name": "Hs.KRAS4b Q61R", "sequence-type": "depositor-full", "addgene_id": "83135", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -11626,7 +14482,10 @@ "plasmid_name": "pENTR-D-kcnj13", "sequence-type": "addgene-full", "addgene_id": "173143", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173143.addgene-full.gb" }, @@ -11635,7 +14494,10 @@ "plasmid_name": "BMP4_pLX307", "sequence-type": "addgene-full", "addgene_id": "98321", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98321.addgene-full.gb" }, @@ -11644,7 +14506,10 @@ "plasmid_name": "pDONR221-TAF15 g1172a No Stop", "sequence-type": "addgene-full", "addgene_id": "84898", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1109434108", + "https://www.ncbi.nlm.nih.gov/pubmed/22065782" + ], "kit": null, "file": "data/addgene_plasmids/84898.addgene-full.gb" }, @@ -11653,7 +14518,10 @@ "plasmid_name": "pPB-EF1a-MegaGate-HA-Hygro", "sequence-type": "addgene-full", "addgene_id": "175268", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175268.addgene-full.gb" }, @@ -11662,7 +14530,10 @@ "plasmid_name": "pEBTet-SNAP-HsSAS6", "sequence-type": "addgene-full", "addgene_id": "136789", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136789.addgene-full.gb" }, @@ -11671,7 +14542,10 @@ "plasmid_name": "pDONR223_EGFR_p.S645C", "sequence-type": "addgene-full", "addgene_id": "82853", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82853.addgene-full.gb" }, @@ -11680,7 +14554,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hADAM10(aa1-654)", "sequence-type": "addgene-full", "addgene_id": "189558", - "references": [], "kit": null, "file": "data/addgene_plasmids/189558.addgene-full.gb" }, @@ -11689,7 +14562,10 @@ "plasmid_name": "Active Wnt8A-V5", "sequence-type": "depositor-full", "addgene_id": "43818", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43818.depositor-full.gb" }, @@ -11698,7 +14574,10 @@ "plasmid_name": "pCSegfpcherry", "sequence-type": "depositor-full", "addgene_id": "22465", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/22465.depositor-full.gb" }, @@ -11707,7 +14586,10 @@ "plasmid_name": "pHAGE-FGFR3-A634T", "sequence-type": "addgene-full", "addgene_id": "116381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116381.addgene-full.gb" }, @@ -11716,7 +14598,10 @@ "plasmid_name": "actc1b-mKate2-rab34a", "sequence-type": "addgene-full", "addgene_id": "109625", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109625.addgene-full.gb" }, @@ -11725,7 +14610,10 @@ "plasmid_name": "TFORF3225", "sequence-type": "addgene-full", "addgene_id": "144701", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144701.addgene-full.gb" }, @@ -11734,7 +14622,10 @@ "plasmid_name": "pMuLE ENTR H1 R4-R3", "sequence-type": "depositor-full", "addgene_id": "62105", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62105.depositor-full.gb" }, @@ -11743,7 +14634,9 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ashL344A-mKate2-splitmVenusN", "sequence-type": "depositor-full", "addgene_id": "69584", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "file": "data/addgene_plasmids/69584.depositor-full.gb" }, @@ -11752,7 +14645,10 @@ "plasmid_name": "tetO-NKX2.5", "sequence-type": "addgene-full", "addgene_id": "46029", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "file": "data/addgene_plasmids/46029.addgene-full.gb" }, @@ -11761,7 +14657,10 @@ "plasmid_name": "pDONR223_SYCP1_p.E773K", "sequence-type": "addgene-full", "addgene_id": "81535", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -11773,7 +14672,6 @@ "plasmid_name": "R777-E168 Hs.PIK3CD-nostop", "sequence-type": "depositor-full", "addgene_id": "70452", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -11785,7 +14683,10 @@ "plasmid_name": "pDONR221-SLC12A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161110", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161110.addgene-full.gb" }, @@ -11794,7 +14695,9 @@ "plasmid_name": "GGDest2-Amp", "sequence-type": "addgene-full", "addgene_id": "157650", - "references": [], + "references": [ + "https://doi.org/10.17504/protocols.io.brgcm3sw" + ], "kit": null, "file": "data/addgene_plasmids/157650.addgene-full.gb" }, @@ -11803,7 +14706,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-M", "sequence-type": "addgene-full", "addgene_id": "154419", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154419.addgene-full.gb" }, @@ -11812,7 +14718,9 @@ "plasmid_name": "p5E-hs_ICAM_short (JDW 1046)", "sequence-type": "addgene-full", "addgene_id": "224480", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224480.addgene-full.gb" }, @@ -11821,7 +14729,10 @@ "plasmid_name": "pFRT_TO_FlagHA_CELF1", "sequence-type": "addgene-full", "addgene_id": "106099", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106099.addgene-full.gb" }, @@ -11830,7 +14741,10 @@ "plasmid_name": "pDONR223-ZNF830", "sequence-type": "addgene-full", "addgene_id": "88342", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88342.addgene-full.gb" }, @@ -11839,7 +14753,10 @@ "plasmid_name": "pCFJ1001", "sequence-type": "depositor-full", "addgene_id": "44476", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44476.depositor-full.gb" }, @@ -11848,7 +14765,10 @@ "plasmid_name": "pENTR223-EBNA3C", "sequence-type": "addgene-full", "addgene_id": "198576", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198576.addgene-full.gb" }, @@ -11857,7 +14777,10 @@ "plasmid_name": "TFORF3485", "sequence-type": "addgene-full", "addgene_id": "144961", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144961.addgene-full.gb" }, @@ -11866,7 +14789,9 @@ "plasmid_name": "pDONR221-PNPT1", "sequence-type": "addgene-full", "addgene_id": "166196", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166196.addgene-full.gb" }, @@ -11875,7 +14800,10 @@ "plasmid_name": "pHAGE-EGFR-G719D", "sequence-type": "addgene-full", "addgene_id": "116255", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116255.addgene-full.gb" }, @@ -11884,7 +14812,10 @@ "plasmid_name": "pAG424GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14152", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -11896,7 +14827,10 @@ "plasmid_name": "pER8 cHA-XERICO", "sequence-type": "addgene-full", "addgene_id": "118690", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118690.addgene-full.gb" }, @@ -11905,7 +14839,10 @@ "plasmid_name": "TFORF3059", "sequence-type": "addgene-full", "addgene_id": "144535", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144535.addgene-full.gb" }, @@ -11914,7 +14851,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-Nucleocapsid2", "sequence-type": "addgene-full", "addgene_id": "168907", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168907.addgene-full.gb" }, @@ -11923,7 +14863,10 @@ "plasmid_name": "pEN_TTmiRc2_3xflag_CHEK2", "sequence-type": "addgene-full", "addgene_id": "136526", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136526.addgene-full.gb" }, @@ -11932,7 +14875,10 @@ "plasmid_name": "pDONR221-SLC5A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161324", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161324.addgene-full.gb" }, @@ -11941,7 +14887,10 @@ "plasmid_name": "pTOX2", "sequence-type": "addgene-full", "addgene_id": "127447", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.00990-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31201277" + ], "kit": null, "file": "data/addgene_plasmids/127447.addgene-full.gb" }, @@ -11950,7 +14899,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.H1047Y", "sequence-type": "addgene-full", "addgene_id": "81701", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -11962,7 +14914,10 @@ "plasmid_name": "pMMLV-EGFP-P2A-Puro", "sequence-type": "addgene-full", "addgene_id": "160226", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.07.009", + "https://www.ncbi.nlm.nih.gov/pubmed/34352222" + ], "kit": null, "file": "data/addgene_plasmids/160226.addgene-full.gb" }, @@ -11971,7 +14926,10 @@ "plasmid_name": "pDR FLIP43 GPS1", "sequence-type": "addgene-full", "addgene_id": "101084", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-017-0021-9", + "https://www.ncbi.nlm.nih.gov/pubmed/28970478" + ], "kit": null, "file": "data/addgene_plasmids/101084.addgene-full.gb" }, @@ -11980,7 +14938,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 M_nostop", "sequence-type": "addgene-full", "addgene_id": "149322", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149322.addgene-full.gb" }, @@ -11989,7 +14950,9 @@ "plasmid_name": "pDRFLIP38", "sequence-type": "depositor-full", "addgene_id": "65516", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65516.depositor-full.gb" }, @@ -11998,7 +14961,10 @@ "plasmid_name": "pSGE_895_Nhe2_EcR-to-gl", "sequence-type": "depositor-full", "addgene_id": "71184", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71184.depositor-full.gb" }, @@ -12007,7 +14973,10 @@ "plasmid_name": "CMYA5/pDEST17", "sequence-type": "addgene-full", "addgene_id": "98115", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "file": "data/addgene_plasmids/98115.addgene-full.gb" }, @@ -12016,7 +14985,6 @@ "plasmid_name": "R777-E102 Hs.HRAS-nostop", "sequence-type": "depositor-full", "addgene_id": "70386", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -12028,7 +14996,10 @@ "plasmid_name": "pCR8_TtNAM-B1", "sequence-type": "addgene-full", "addgene_id": "124575", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "file": "data/addgene_plasmids/124575.addgene-full.gb" }, @@ -12037,7 +15008,10 @@ "plasmid_name": "pDONR223_ETFB_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82987", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82987.addgene-full.gb" }, @@ -12046,7 +15020,10 @@ "plasmid_name": "IQ013: pMVP/Ad-DEST", "sequence-type": "addgene-full", "addgene_id": "121843", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121843.addgene-full.gb" }, @@ -12055,7 +15032,10 @@ "plasmid_name": "TFORF2971", "sequence-type": "addgene-full", "addgene_id": "144447", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144447.addgene-full.gb" }, @@ -12064,7 +15044,10 @@ "plasmid_name": "pCLXEBR-pTF-mBmi1", "sequence-type": "addgene-full", "addgene_id": "114317", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-125-7_25", + "https://www.ncbi.nlm.nih.gov/pubmed/23097121" + ], "kit": null, "file": "data/addgene_plasmids/114317.addgene-full.gb" }, @@ -12073,7 +15056,10 @@ "plasmid_name": "pEF5B-FRT-AP-Sstr3-GFP-DEST", "sequence-type": "depositor-full", "addgene_id": "49098", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.00654", + "https://www.ncbi.nlm.nih.gov/pubmed/23930224" + ], "kit": null, "file": "data/addgene_plasmids/49098.depositor-full.gb" }, @@ -12082,7 +15068,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12A", "sequence-type": "addgene-full", "addgene_id": "81673", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -12094,7 +15083,10 @@ "plasmid_name": "5'-3xFLAG GFP minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212086", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212086.addgene-full.gb" }, @@ -12103,7 +15095,10 @@ "plasmid_name": "pDONR223_PIK3R4_p.R998Q", "sequence-type": "addgene-full", "addgene_id": "81593", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -12115,7 +15110,10 @@ "plasmid_name": "pEBTet-SNAP-Cep97", "sequence-type": "addgene-full", "addgene_id": "136800", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136800.addgene-full.gb" }, @@ -12124,7 +15122,10 @@ "plasmid_name": "p5E-161K enhancer-NR2F2-MUT", "sequence-type": "addgene-full", "addgene_id": "138371", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138371.addgene-full.gb" }, @@ -12133,7 +15134,10 @@ "plasmid_name": "p3E-rab25b", "sequence-type": "addgene-full", "addgene_id": "109683", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109683.addgene-full.gb" }, @@ -12142,7 +15146,10 @@ "plasmid_name": "pcDNA3.2/EV", "sequence-type": "addgene-full", "addgene_id": "120833", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120833.addgene-full.gb" }, @@ -12151,7 +15158,10 @@ "plasmid_name": "pDONR221_MFSD13A", "sequence-type": "addgene-full", "addgene_id": "131952", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131952.addgene-full.gb" }, @@ -12160,7 +15170,9 @@ "plasmid_name": "p3E-P2A-CFP no-pA", "sequence-type": "depositor-full", "addgene_id": "80827", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80827.depositor-full.gb" }, @@ -12169,7 +15181,10 @@ "plasmid_name": "pHAGE-ERBB2-D769H", "sequence-type": "addgene-full", "addgene_id": "116327", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116327.addgene-full.gb" }, @@ -12178,7 +15193,10 @@ "plasmid_name": "pQLinkHD_EBFP2-LSSmOrange", "sequence-type": "addgene-full", "addgene_id": "118856", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "file": "data/addgene_plasmids/118856.addgene-full.gb" }, @@ -12187,7 +15205,10 @@ "plasmid_name": "TFORF3337", "sequence-type": "addgene-full", "addgene_id": "144813", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144813.addgene-full.gb" }, @@ -12196,7 +15217,10 @@ "plasmid_name": "JDW 770 (pTol2-kdrl:EGFP-hsKRAS4B-G12V-ac/Y)", "sequence-type": "addgene-full", "addgene_id": "156414", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156414.addgene-full.gb" }, @@ -12205,7 +15229,10 @@ "plasmid_name": "pSLIK 3xFLAG-CSE1L neo", "sequence-type": "addgene-full", "addgene_id": "192341", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192341.addgene-full.gb" }, @@ -12214,7 +15241,10 @@ "plasmid_name": "pLEX307-mFzd8", "sequence-type": "depositor-full", "addgene_id": "102870", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "file": "data/addgene_plasmids/102870.depositor-full.gb" }, @@ -12223,7 +15253,10 @@ "plasmid_name": "actc1b-mKate2-rab28", "sequence-type": "addgene-full", "addgene_id": "109618", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109618.addgene-full.gb" }, @@ -12232,7 +15265,10 @@ "plasmid_name": "pDON207 NSP3 A890D", "sequence-type": "addgene-full", "addgene_id": "180069", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180069.addgene-full.gb" }, @@ -12241,7 +15277,10 @@ "plasmid_name": "TFORF3412", "sequence-type": "addgene-full", "addgene_id": "144888", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144888.addgene-full.gb" }, @@ -12250,7 +15289,10 @@ "plasmid_name": "pAAVS1-P-CAG-GFP", "sequence-type": "addgene-full", "addgene_id": "80491", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "file": "data/addgene_plasmids/80491.addgene-full.gb" }, @@ -12259,7 +15301,10 @@ "plasmid_name": "pAG303GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14205", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -12271,7 +15316,6 @@ "plasmid_name": "pEF 1-SAG12-4", "sequence-type": "depositor-full", "addgene_id": "20092", - "references": [], "kit": null, "file": "data/addgene_plasmids/20092.depositor-full.gb" }, @@ -12280,7 +15324,10 @@ "plasmid_name": "pDONR223_THEMIS_p.P216S", "sequence-type": "addgene-full", "addgene_id": "81508", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -12292,7 +15339,9 @@ "plasmid_name": "pMpGWB334", "sequence-type": "depositor-full", "addgene_id": "68662", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68662.depositor-full.gb" }, @@ -12301,7 +15350,10 @@ "plasmid_name": "pDONR223_SERPINB5_p.A165T", "sequence-type": "addgene-full", "addgene_id": "82741", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -12313,7 +15365,10 @@ "plasmid_name": "pDONR221 CARD8 PAM E274R", "sequence-type": "addgene-full", "addgene_id": "169977", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169977.addgene-full.gb" }, @@ -12322,7 +15377,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-N", "sequence-type": "addgene-full", "addgene_id": "154424", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154424.addgene-full.gb" }, @@ -12331,7 +15389,10 @@ "plasmid_name": "EcAvs1", "sequence-type": "addgene-full", "addgene_id": "188787", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abm4096", + "https://www.ncbi.nlm.nih.gov/pubmed/35951700" + ], "kit": null, "file": "data/addgene_plasmids/188787.addgene-full.gb" }, @@ -12340,7 +15401,10 @@ "plasmid_name": "pDONR223_FGFR3_p.R399H", "sequence-type": "addgene-full", "addgene_id": "82921", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82921.addgene-full.gb" }, @@ -12349,7 +15413,10 @@ "plasmid_name": "R620-M14-303: CMV51p> SARS-CoV-2 S(1-1213)-2P-T4f-His6 B.1.351", "sequence-type": "addgene-full", "addgene_id": "170198", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/170198.addgene-full.gb" }, @@ -12358,7 +15425,10 @@ "plasmid_name": "IX601: pMVP (L3-L2) FLAG epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121751", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121751.addgene-full.gb" }, @@ -12367,7 +15437,10 @@ "plasmid_name": "pEN_TT 3xFLAG-CSE1L", "sequence-type": "addgene-full", "addgene_id": "192295", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192295.addgene-full.gb" }, @@ -12376,7 +15449,10 @@ "plasmid_name": "pMpGWB102-Citrine-PTS1", "sequence-type": "depositor-full", "addgene_id": "44592", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "file": "data/addgene_plasmids/44592.depositor-full.gb" }, @@ -12385,7 +15461,10 @@ "plasmid_name": "pGL3-DSCP-Gateway", "sequence-type": "depositor-full", "addgene_id": "71507", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13994", + "https://www.ncbi.nlm.nih.gov/pubmed/25517091" + ], "kit": null, "file": "data/addgene_plasmids/71507.depositor-full.gb" }, @@ -12394,7 +15473,10 @@ "plasmid_name": "pHAGE-EGFR-L747_P753delinsS", "sequence-type": "addgene-full", "addgene_id": "116268", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116268.addgene-full.gb" }, @@ -12403,7 +15485,6 @@ "plasmid_name": "His SUMO TEV E47K SPOP 1-374", "sequence-type": "addgene-full", "addgene_id": "197017", - "references": [], "kit": null, "file": "data/addgene_plasmids/197017.addgene-full.gb" }, @@ -12412,7 +15493,10 @@ "plasmid_name": "pHAGE-BRAF-N581S", "sequence-type": "addgene-full", "addgene_id": "116188", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116188.addgene-full.gb" }, @@ -12421,7 +15505,10 @@ "plasmid_name": "TFORF3032", "sequence-type": "addgene-full", "addgene_id": "144508", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144508.addgene-full.gb" }, @@ -12430,7 +15517,10 @@ "plasmid_name": "pLEX307-SARS-CoV-3CL", "sequence-type": "addgene-full", "addgene_id": "160280", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160280.addgene-full.gb" }, @@ -12439,7 +15529,10 @@ "plasmid_name": "pLSLT", "sequence-type": "depositor-full", "addgene_id": "51498", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51498.depositor-full.gb" }, @@ -12448,7 +15541,10 @@ "plasmid_name": "pTKan-p35S::Csy4-pC4H::cogRFP (C90, JBEI-15908)", "sequence-type": "addgene-full", "addgene_id": "110143", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.6b00295", + "https://www.ncbi.nlm.nih.gov/pubmed/28094975" + ], "kit": null, "file": "data/addgene_plasmids/110143.addgene-full.gb" }, @@ -12457,7 +15553,10 @@ "plasmid_name": "pENTR-Rabin8", "sequence-type": "depositor-full", "addgene_id": "24910", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.053", + "https://www.ncbi.nlm.nih.gov/pubmed/17574030" + ], "kit": null, "file": "data/addgene_plasmids/24910.depositor-full.gb" }, @@ -12466,7 +15565,10 @@ "plasmid_name": "pJOG267", "sequence-type": "addgene-full", "addgene_id": "105339", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -12478,7 +15580,10 @@ "plasmid_name": "pInducer20-iCreb5(T59/T61A)(HA)", "sequence-type": "addgene-full", "addgene_id": "195027", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "file": "data/addgene_plasmids/195027.addgene-full.gb" }, @@ -12487,7 +15592,10 @@ "plasmid_name": "A1-LCD+12E", "sequence-type": "addgene-full", "addgene_id": "178676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178676.addgene-full.gb" }, @@ -12496,7 +15604,10 @@ "plasmid_name": "A1-LCD Aro+", "sequence-type": "addgene-full", "addgene_id": "169717", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "file": "data/addgene_plasmids/169717.addgene-full.gb" }, @@ -12505,7 +15616,10 @@ "plasmid_name": "pDONR221-SLC39A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161319", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161319.addgene-full.gb" }, @@ -12514,7 +15628,10 @@ "plasmid_name": "pDONR223_ADORA2A_WT", "sequence-type": "addgene-full", "addgene_id": "81888", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -12526,7 +15643,9 @@ "plasmid_name": "pPB-cT3G-cERP2-HOXA10", "sequence-type": "addgene-full", "addgene_id": "222539", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222539.addgene-full.gb" }, @@ -12535,7 +15654,10 @@ "plasmid_name": "pDONR221-RAP1", "sequence-type": "addgene-full", "addgene_id": "84525", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.185793.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25800674" + ], "kit": null, "file": "data/addgene_plasmids/84525.addgene-full.gb" }, @@ -12544,7 +15666,10 @@ "plasmid_name": "pDONR223_OTUD6A_WT", "sequence-type": "addgene-full", "addgene_id": "81813", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -12556,7 +15681,10 @@ "plasmid_name": "pHAGE-ARAF-P216L", "sequence-type": "addgene-full", "addgene_id": "116113", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116113.addgene-full.gb" }, @@ -12565,7 +15693,10 @@ "plasmid_name": "TFORF3117", "sequence-type": "addgene-full", "addgene_id": "144593", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144593.addgene-full.gb" }, @@ -12574,7 +15705,10 @@ "plasmid_name": "pMOS017: ratiometric pHluorin (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163052", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163052.addgene-full.gb" }, @@ -12583,7 +15717,10 @@ "plasmid_name": "TFORF3197", "sequence-type": "addgene-full", "addgene_id": "144673", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144673.addgene-full.gb" }, @@ -12592,7 +15729,10 @@ "plasmid_name": "p3E-Rab38b", "sequence-type": "addgene-full", "addgene_id": "109757", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109757.addgene-full.gb" }, @@ -12601,7 +15741,10 @@ "plasmid_name": "pDONR221_SLC15A2", "sequence-type": "addgene-full", "addgene_id": "131886", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131886.addgene-full.gb" }, @@ -12610,7 +15753,10 @@ "plasmid_name": "pJA269", "sequence-type": "depositor-full", "addgene_id": "21544", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "file": "data/addgene_plasmids/21544.depositor-full.gb" }, @@ -12619,7 +15765,10 @@ "plasmid_name": "pDONR223_ACVR1B_p.E412D", "sequence-type": "addgene-full", "addgene_id": "81447", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -12631,7 +15780,10 @@ "plasmid_name": "pLX-EF1a_NKX2-4", "sequence-type": "addgene-full", "addgene_id": "221490", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221490.addgene-full.gb" }, @@ -12640,7 +15792,6 @@ "plasmid_name": "CMYA5tnC/pENTR3C", "sequence-type": "addgene-full", "addgene_id": "98128", - "references": [], "kit": null, "file": "data/addgene_plasmids/98128.addgene-full.gb" }, @@ -12649,7 +15800,10 @@ "plasmid_name": "pHAGE-BRAF-D594H", "sequence-type": "addgene-full", "addgene_id": "116137", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116137.addgene-full.gb" }, @@ -12658,7 +15812,10 @@ "plasmid_name": "pDEST-ORF-V2", "sequence-type": "depositor-full", "addgene_id": "73638", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaf0793", + "https://www.ncbi.nlm.nih.gov/pubmed/27405979" + ], "kit": null, "file": "data/addgene_plasmids/73638.depositor-full.gb" }, @@ -12667,7 +15824,10 @@ "plasmid_name": "pInducer10-SAE1_sh3", "sequence-type": "addgene-full", "addgene_id": "168985", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "file": "data/addgene_plasmids/168985.addgene-full.gb" }, @@ -12676,7 +15836,10 @@ "plasmid_name": "actc1b-Lifeact-mKate2", "sequence-type": "addgene-full", "addgene_id": "109493", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109493.addgene-full.gb" }, @@ -12685,7 +15848,10 @@ "plasmid_name": "pMOS015E: Entry vector for: mito-roGFP2-Orp1 H2O2 oxidation sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163076", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163076.addgene-full.gb" }, @@ -12694,7 +15860,10 @@ "plasmid_name": "pLenti-pHluorin_M153R-CD63", "sequence-type": "addgene-full", "addgene_id": "172117", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-15747-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32350252" + ], "kit": null, "file": "data/addgene_plasmids/172117.addgene-full.gb" }, @@ -12715,7 +15884,10 @@ "plasmid_name": "pDONR223_WBSCR17_WT", "sequence-type": "addgene-full", "addgene_id": "81837", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -12727,7 +15899,10 @@ "plasmid_name": "pDONR221-DIRC2_STOP", "sequence-type": "addgene-full", "addgene_id": "161046", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161046.addgene-full.gb" }, @@ -12736,7 +15911,10 @@ "plasmid_name": "pENTR U6-hTERTsh", "sequence-type": "addgene-full", "addgene_id": "111385", - "references": [], + "references": [ + "https://doi.org/10.3390/genes7080046", + "https://www.ncbi.nlm.nih.gov/pubmed/27537914" + ], "kit": null, "file": "data/addgene_plasmids/111385.addgene-full.gb" }, @@ -12745,7 +15923,9 @@ "plasmid_name": "pMpGWB113", "sequence-type": "depositor-full", "addgene_id": "68567", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68567.depositor-full.gb" }, @@ -12754,7 +15934,10 @@ "plasmid_name": "pDONR223_CHD2_p.P195L", "sequence-type": "addgene-full", "addgene_id": "81463", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -12766,7 +15949,10 @@ "plasmid_name": "TFORF3181", "sequence-type": "addgene-full", "addgene_id": "144657", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144657.addgene-full.gb" }, @@ -12775,7 +15961,6 @@ "plasmid_name": "Hs.KRAS4b", "sequence-type": "depositor-full", "addgene_id": "83129", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -12787,7 +15972,10 @@ "plasmid_name": "pAFMW-Nbr[K276A]", "sequence-type": "addgene-full", "addgene_id": "188597", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188597.addgene-full.gb" }, @@ -12796,7 +15984,10 @@ "plasmid_name": "pER8 cHA-FG1", "sequence-type": "addgene-full", "addgene_id": "118689", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118689.addgene-full.gb" }, @@ -12805,7 +15996,10 @@ "plasmid_name": "pSAM2_mCherry_Gata6", "sequence-type": "addgene-full", "addgene_id": "72694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72694.addgene-full.gb" }, @@ -12814,7 +16008,10 @@ "plasmid_name": "pMT405", "sequence-type": "addgene-full", "addgene_id": "139383", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0468-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32231334" + ], "kit": null, "file": "data/addgene_plasmids/139383.addgene-full.gb" }, @@ -12823,7 +16020,10 @@ "plasmid_name": "TFORF3502", "sequence-type": "addgene-full", "addgene_id": "144978", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144978.addgene-full.gb" }, @@ -12832,7 +16032,10 @@ "plasmid_name": "pCMB-ACTFr", "sequence-type": "depositor-full", "addgene_id": "61192", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61192.depositor-full.gb" }, @@ -12841,7 +16044,10 @@ "plasmid_name": "pDONR223_ERBB2_p.D845A", "sequence-type": "addgene-full", "addgene_id": "82905", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82905.addgene-full.gb" }, @@ -12850,7 +16056,10 @@ "plasmid_name": "LD101: pMVP (L3-L2) eCFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121775", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121775.addgene-full.gb" }, @@ -12859,7 +16068,10 @@ "plasmid_name": "pLX304-DCK*-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176297", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "file": "data/addgene_plasmids/176297.addgene-full.gb" }, @@ -12868,7 +16080,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.T257I", "sequence-type": "addgene-full", "addgene_id": "81718", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -12880,7 +16095,10 @@ "plasmid_name": "pDONR221-SLC10A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161109", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161109.addgene-full.gb" }, @@ -12889,7 +16107,10 @@ "plasmid_name": "pEntr-Nkx2-5flbio", "sequence-type": "depositor-full", "addgene_id": "32969", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1016959108", + "https://www.ncbi.nlm.nih.gov/pubmed/21415370" + ], "kit": null, "file": "data/addgene_plasmids/32969.depositor-full.gb" }, @@ -12898,7 +16119,10 @@ "plasmid_name": "pDONR223_STK11_p.G251V", "sequence-type": "addgene-full", "addgene_id": "82765", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82765.addgene-full.gb" }, @@ -12907,7 +16131,10 @@ "plasmid_name": "tetO-GATA4", "sequence-type": "addgene-full", "addgene_id": "46030", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "file": "data/addgene_plasmids/46030.addgene-full.gb" }, @@ -12916,7 +16143,10 @@ "plasmid_name": "pENTR-BIF4", "sequence-type": "addgene-full", "addgene_id": "188443", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188443.addgene-full.gb" }, @@ -12925,7 +16155,10 @@ "plasmid_name": "TFORF3242", "sequence-type": "addgene-full", "addgene_id": "144718", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144718.addgene-full.gb" }, @@ -12934,7 +16167,10 @@ "plasmid_name": "pCM5.42", "sequence-type": "depositor-full", "addgene_id": "19390", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19390.depositor-full.gb" }, @@ -12943,7 +16179,10 @@ "plasmid_name": "pHAGE-FLT1-T777I", "sequence-type": "addgene-full", "addgene_id": "116398", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116398.addgene-full.gb" }, @@ -12952,7 +16191,10 @@ "plasmid_name": "pBullet-end-n", "sequence-type": "depositor-full", "addgene_id": "53073", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53073.depositor-full.gb" }, @@ -12961,7 +16203,10 @@ "plasmid_name": "pENT-L3-a-element-L4", "sequence-type": "addgene-full", "addgene_id": "186366", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186366.addgene-full.gb" }, @@ -12970,7 +16215,6 @@ "plasmid_name": "V5-W279A-long-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192085", - "references": [], "kit": null, "file": "data/addgene_plasmids/192085.addgene-full.gb" }, @@ -12979,7 +16223,10 @@ "plasmid_name": "MAC_C_CCDC22", "sequence-type": "addgene-full", "addgene_id": "209686", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209686.addgene-full.gb" }, @@ -12988,7 +16235,6 @@ "plasmid_name": "Hs.KRAS4a G12C", "sequence-type": "depositor-full", "addgene_id": "83167", - "references": [], "kit": null, "file": "data/addgene_plasmids/83167.depositor-full.gb" }, @@ -12997,7 +16243,9 @@ "plasmid_name": "GGDest1-Amp", "sequence-type": "addgene-full", "addgene_id": "157649", - "references": [], + "references": [ + "https://doi.org/10.17504/protocols.io.brgcm3sw" + ], "kit": null, "file": "data/addgene_plasmids/157649.addgene-full.gb" }, @@ -13006,7 +16254,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP1", "sequence-type": "addgene-full", "addgene_id": "154400", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154400.addgene-full.gb" }, @@ -13015,7 +16266,6 @@ "plasmid_name": "p667-UBC-COQ8B-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189915", - "references": [], "kit": null, "file": "data/addgene_plasmids/189915.addgene-full.gb" }, @@ -13024,7 +16274,10 @@ "plasmid_name": "pDONR223_NRAS_p.Q61K", "sequence-type": "addgene-full", "addgene_id": "81657", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -13036,7 +16289,10 @@ "plasmid_name": "GALE_pLX307", "sequence-type": "addgene-full", "addgene_id": "98338", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98338.addgene-full.gb" }, @@ -13045,7 +16301,10 @@ "plasmid_name": "pENTR/pSUPER+ (575-1)", "sequence-type": "depositor-full", "addgene_id": "17338", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17338.depositor-full.gb" }, @@ -13054,7 +16313,10 @@ "plasmid_name": "AdMKP-3 S197A", "sequence-type": "addgene-full", "addgene_id": "131522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mce.2012.03.025", + "https://www.ncbi.nlm.nih.gov/pubmed/22521266" + ], "kit": null, "file": "data/addgene_plasmids/131522.addgene-full.gb" }, @@ -13063,7 +16325,10 @@ "plasmid_name": "pME-nCas9n-P2A-mKate2-pA", "sequence-type": "addgene-full", "addgene_id": "109547", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109547.addgene-full.gb" }, @@ -13072,7 +16337,10 @@ "plasmid_name": "TFORF2987", "sequence-type": "addgene-full", "addgene_id": "144463", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144463.addgene-full.gb" }, @@ -13081,7 +16349,10 @@ "plasmid_name": "DDX11", "sequence-type": "addgene-full", "addgene_id": "155502", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155502.addgene-full.gb" }, @@ -13090,7 +16361,10 @@ "plasmid_name": "pDONR221_SLC22A20P", "sequence-type": "addgene-full", "addgene_id": "131976", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131976.addgene-full.gb" }, @@ -13099,7 +16373,10 @@ "plasmid_name": "pcDNA3.2/pr-Membrane", "sequence-type": "addgene-full", "addgene_id": "120817", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120817.addgene-full.gb" }, @@ -13108,7 +16385,10 @@ "plasmid_name": "TFORF3307", "sequence-type": "addgene-full", "addgene_id": "144783", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144783.addgene-full.gb" }, @@ -13117,7 +16397,10 @@ "plasmid_name": "pHAGE-EGFR-S492R", "sequence-type": "addgene-full", "addgene_id": "116303", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116303.addgene-full.gb" }, @@ -13126,7 +16409,10 @@ "plasmid_name": "pMMK803", "sequence-type": "addgene-full", "addgene_id": "207138", - "references": [], + "references": [ + "https://doi.org/10.1038/s43705-023-00309-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37726481" + ], "kit": null, "file": "data/addgene_plasmids/207138.addgene-full.gb" }, @@ -13135,7 +16421,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hSFRP1", "sequence-type": "addgene-full", "addgene_id": "189541", - "references": [], "kit": null, "file": "data/addgene_plasmids/189541.addgene-full.gb" }, @@ -13144,7 +16429,9 @@ "plasmid_name": "pGem-nHyPer:sAPX", "sequence-type": "addgene-full", "addgene_id": "84735", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "file": "data/addgene_plasmids/84735.addgene-full.gb" }, @@ -13153,7 +16440,10 @@ "plasmid_name": "pEBTetD-SNAP-HsSAS6", "sequence-type": "addgene-full", "addgene_id": "136790", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136790.addgene-full.gb" }, @@ -13162,7 +16452,10 @@ "plasmid_name": "pMuLE ENTR CMV iRFP L5-L2", "sequence-type": "depositor-full", "addgene_id": "62157", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62157.depositor-full.gb" }, @@ -13171,7 +16464,10 @@ "plasmid_name": "pPB-EF1a-MegaGate-DD-Blast", "sequence-type": "addgene-full", "addgene_id": "175271", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175271.addgene-full.gb" }, @@ -13180,7 +16476,10 @@ "plasmid_name": "pME-luc2", "sequence-type": "addgene-full", "addgene_id": "138355", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138355.addgene-full.gb" }, @@ -13189,7 +16488,10 @@ "plasmid_name": "pEBTet-SNAP-Cep164", "sequence-type": "addgene-full", "addgene_id": "136824", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136824.addgene-full.gb" }, @@ -13198,7 +16500,6 @@ "plasmid_name": "p42Neo 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58558", - "references": [], "kit": null, "file": "data/addgene_plasmids/58558.depositor-full.gb" }, @@ -13207,7 +16508,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP3_nostop", "sequence-type": "addgene-full", "addgene_id": "149306", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149306.addgene-full.gb" }, @@ -13216,7 +16520,10 @@ "plasmid_name": "p6329 pHAGE-P-CMVt-N-HA-GAW-HERC2-F5", "sequence-type": "addgene-full", "addgene_id": "100139", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100139.addgene-full.gb" }, @@ -13225,7 +16532,10 @@ "plasmid_name": "pLX302-NIPP1-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87775", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "file": "data/addgene_plasmids/87775.addgene-full.gb" }, @@ -13234,7 +16544,10 @@ "plasmid_name": "PP7_mCherry", "sequence-type": "addgene-full", "addgene_id": "61763", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.03939", + "https://www.ncbi.nlm.nih.gov/pubmed/25271374" + ], "kit": null, "file": "data/addgene_plasmids/61763.addgene-full.gb" }, @@ -13243,7 +16556,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_HD_160-223AA", "sequence-type": "addgene-full", "addgene_id": "221489", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221489.addgene-full.gb" }, @@ -13252,7 +16568,6 @@ "plasmid_name": "CMYA5tnT/pDEST26-N-FLAG", "sequence-type": "addgene-full", "addgene_id": "98131", - "references": [], "kit": null, "file": "data/addgene_plasmids/98131.addgene-full.gb" }, @@ -13261,7 +16576,10 @@ "plasmid_name": "KK001: pMVP/SB/Hygro-DEST", "sequence-type": "addgene-full", "addgene_id": "121867", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121867.addgene-full.gb" }, @@ -13270,7 +16588,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-ICK_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158187", - "references": [], "kit": null, "file": "data/addgene_plasmids/158187.addgene-full.gb" }, @@ -13279,7 +16596,10 @@ "plasmid_name": "pENTR D-TOPO-C3_32", "sequence-type": "depositor-full", "addgene_id": "60274", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60274.depositor-full.gb" }, @@ -13288,7 +16608,10 @@ "plasmid_name": "pHAGE-EGFR-L747S", "sequence-type": "addgene-full", "addgene_id": "116271", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116271.addgene-full.gb" }, @@ -13297,7 +16620,10 @@ "plasmid_name": "TFORF3469", "sequence-type": "addgene-full", "addgene_id": "144945", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144945.addgene-full.gb" }, @@ -13306,7 +16632,10 @@ "plasmid_name": "IX702: pMVP (L3-L2) OLLAS-IRES-eGFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121748", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121748.addgene-full.gb" }, @@ -13315,7 +16644,10 @@ "plasmid_name": "pDONR221-eGFP_myr", "sequence-type": "addgene-full", "addgene_id": "221412", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221412.addgene-full.gb" }, @@ -13324,7 +16656,10 @@ "plasmid_name": "pLenti CMV/TO Neo DEST (685-3)", "sequence-type": "depositor-full", "addgene_id": "17292", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17292.depositor-full.gb" }, @@ -13333,7 +16668,10 @@ "plasmid_name": "modRNAc0-Cas9-2A-GFP", "sequence-type": "addgene-full", "addgene_id": "170181", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2022.100290", + "https://www.ncbi.nlm.nih.gov/pubmed/36160051" + ], "kit": null, "file": "data/addgene_plasmids/170181.addgene-full.gb" }, @@ -13342,7 +16680,10 @@ "plasmid_name": "pDONR223_PCCB_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82938", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82938.addgene-full.gb" }, @@ -13351,7 +16692,10 @@ "plasmid_name": "pDONR221-SLC35D1_STOP", "sequence-type": "addgene-full", "addgene_id": "161300", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161300.addgene-full.gb" }, @@ -13360,7 +16704,10 @@ "plasmid_name": "pDONR223_KPNA3_WT", "sequence-type": "addgene-full", "addgene_id": "81891", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -13372,7 +16719,10 @@ "plasmid_name": "pAG416GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14219", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -13384,7 +16734,10 @@ "plasmid_name": "TFORF3035", "sequence-type": "addgene-full", "addgene_id": "144511", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144511.addgene-full.gb" }, @@ -13393,7 +16746,10 @@ "plasmid_name": "pG3H-PE3max-attR1R2", "sequence-type": "addgene-full", "addgene_id": "213049", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100741", + "https://www.ncbi.nlm.nih.gov/pubmed/37897041" + ], "kit": null, "file": "data/addgene_plasmids/213049.addgene-full.gb" }, @@ -13402,7 +16758,10 @@ "plasmid_name": "pHAGE-BRAF-P731S", "sequence-type": "addgene-full", "addgene_id": "116191", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116191.addgene-full.gb" }, @@ -13411,7 +16770,10 @@ "plasmid_name": "pDONR223_NFE2L2_p.T80K", "sequence-type": "addgene-full", "addgene_id": "81511", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -13423,7 +16785,10 @@ "plasmid_name": "pDONR223 ATG3 WT", "sequence-type": "addgene-full", "addgene_id": "129292", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129292.addgene-full.gb" }, @@ -13432,8 +16797,11 @@ "plasmid_name": "pDONR223_RBM45_p.D434Y", "sequence-type": "addgene-full", "addgene_id": "82758", - "references": [], - "kit": null, + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], + "kit": null, "file": "data/addgene_plasmids/82758.addgene-full.gb" }, { @@ -13441,7 +16809,10 @@ "plasmid_name": "Hsp70-mplum", "sequence-type": "depositor-full", "addgene_id": "45016", - "references": [], + "references": [ + "https://doi.org/10.1007/s00259-012-2277-7", + "https://www.ncbi.nlm.nih.gov/pubmed/23135322" + ], "kit": null, "file": "data/addgene_plasmids/45016.depositor-full.gb" }, @@ -13450,7 +16821,10 @@ "plasmid_name": "dg264_pENTR_ChronosCel", "sequence-type": "depositor-full", "addgene_id": "66102", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.177956", + "https://www.ncbi.nlm.nih.gov/pubmed/26022242" + ], "kit": null, "file": "data/addgene_plasmids/66102.depositor-full.gb" }, @@ -13459,7 +16833,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-4", "sequence-type": "depositor-full", "addgene_id": "46707", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46707.depositor-full.gb" }, @@ -13468,7 +16845,10 @@ "plasmid_name": "TFORF3415", "sequence-type": "addgene-full", "addgene_id": "144891", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144891.addgene-full.gb" }, @@ -13477,7 +16857,10 @@ "plasmid_name": "TFORF3249", "sequence-type": "addgene-full", "addgene_id": "144725", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144725.addgene-full.gb" }, @@ -13486,7 +16869,10 @@ "plasmid_name": "pDON223 Spike L241-L242-A243-", "sequence-type": "addgene-full", "addgene_id": "180070", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180070.addgene-full.gb" }, @@ -13495,7 +16881,10 @@ "plasmid_name": "actc1b-mKate2-rab14l", "sequence-type": "addgene-full", "addgene_id": "109601", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109601.addgene-full.gb" }, @@ -13504,7 +16893,10 @@ "plasmid_name": "pME eos", "sequence-type": "depositor-full", "addgene_id": "73792", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.072439", + "https://www.ncbi.nlm.nih.gov/pubmed/22296847" + ], "kit": null, "file": "data/addgene_plasmids/73792.depositor-full.gb" }, @@ -13513,7 +16905,10 @@ "plasmid_name": "pDEST_5xUAS:EB3-mScarlet-I", "sequence-type": "addgene-full", "addgene_id": "192358", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.82094", + "https://www.ncbi.nlm.nih.gov/pubmed/36398880" + ], "kit": null, "file": "data/addgene_plasmids/192358.addgene-full.gb" }, @@ -13522,7 +16917,10 @@ "plasmid_name": "p21-S208C/S242R/M694V-MEFV", "sequence-type": "addgene-full", "addgene_id": "134706", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "file": "data/addgene_plasmids/134706.addgene-full.gb" }, @@ -13531,7 +16929,6 @@ "plasmid_name": "pCW57.1_V5_TurboID_FLAG_Ct", "sequence-type": "addgene-full", "addgene_id": "194073", - "references": [], "kit": null, "file": "data/addgene_plasmids/194073.addgene-full.gb" }, @@ -13540,7 +16937,10 @@ "plasmid_name": "pKG-GW2-NgBR", "sequence-type": "addgene-full", "addgene_id": "203165", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "file": "data/addgene_plasmids/203165.addgene-full.gb" }, @@ -13549,7 +16949,10 @@ "plasmid_name": "pAB(EXPR-PYL-HDAC5-NEO)", "sequence-type": "addgene-full", "addgene_id": "114395", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114395.addgene-full.gb" }, @@ -13558,7 +16961,10 @@ "plasmid_name": "pLenti6/V5-DEST-FASCIN", "sequence-type": "addgene-full", "addgene_id": "31207", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccr.2011.05.025", + "https://www.ncbi.nlm.nih.gov/pubmed/21741599" + ], "kit": null, "file": "data/addgene_plasmids/31207.addgene-full.gb" }, @@ -13567,7 +16973,10 @@ "plasmid_name": "pAG305GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14257", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -13579,7 +16988,10 @@ "plasmid_name": "pLenti-161K enhancer-NR2F2-MUT-minP:fLuc-TK:rLuc", "sequence-type": "addgene-full", "addgene_id": "138368", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138368.addgene-full.gb" }, @@ -13588,7 +17000,10 @@ "plasmid_name": "pEBTet-SNAP-Cep72", "sequence-type": "addgene-full", "addgene_id": "136819", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136819.addgene-full.gb" }, @@ -13597,7 +17012,9 @@ "plasmid_name": "pMpGWB302", "sequence-type": "depositor-full", "addgene_id": "68630", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68630.depositor-full.gb" }, @@ -13606,7 +17023,10 @@ "plasmid_name": "pSMAL", "sequence-type": "addgene-full", "addgene_id": "161785", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2013.11.021", + "https://www.ncbi.nlm.nih.gov/pubmed/24388174" + ], "kit": null, "file": "data/addgene_plasmids/161785.addgene-full.gb" }, @@ -13615,7 +17035,10 @@ "plasmid_name": "LIIbeta F 5-6", "sequence-type": "depositor-full", "addgene_id": "54364", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54364.depositor-full.gb" }, @@ -13624,7 +17047,10 @@ "plasmid_name": "pCFJ2452 - [1-2] ENTR - Fluor - ce-mNeon(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159854", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159854.addgene-full.gb" }, @@ -13633,7 +17059,10 @@ "plasmid_name": "MAC_C_TYRO3", "sequence-type": "addgene-full", "addgene_id": "187793", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187793.addgene-full.gb" }, @@ -13642,7 +17071,10 @@ "plasmid_name": "pDestTol2CG2--3.5ubb:plin2-tdtomato", "sequence-type": "addgene-full", "addgene_id": "172534", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64744", + "https://www.ncbi.nlm.nih.gov/pubmed/34114952" + ], "kit": null, "file": "data/addgene_plasmids/172534.addgene-full.gb" }, @@ -13651,7 +17083,10 @@ "plasmid_name": "pHAGE-PIK3CA-N1044K", "sequence-type": "addgene-full", "addgene_id": "116514", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116514.addgene-full.gb" }, @@ -13660,7 +17095,6 @@ "plasmid_name": "pREP81xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79025", - "references": [], "kit": null, "file": "data/addgene_plasmids/79025.depositor-full.gb" }, @@ -13669,7 +17103,6 @@ "plasmid_name": "His8:MBP-tev-Trp-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83390", - "references": [], "kit": null, "file": "data/addgene_plasmids/83390.addgene-full.gb" }, @@ -13678,7 +17111,10 @@ "plasmid_name": "GFP-GCN5", "sequence-type": "addgene-full", "addgene_id": "65386", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65386.addgene-full.gb" }, @@ -13687,7 +17123,10 @@ "plasmid_name": "pDONR221-ZNF275", "sequence-type": "depositor-full", "addgene_id": "101487", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101487.depositor-full.gb" }, @@ -13696,7 +17135,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113476", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113476.addgene-full.gb" }, @@ -13705,7 +17147,10 @@ "plasmid_name": "pDONR223_ETV1_WT", "sequence-type": "addgene-full", "addgene_id": "82209", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82209.addgene-full.gb" }, @@ -13714,7 +17159,10 @@ "plasmid_name": "p5Edll4E2", "sequence-type": "addgene-full", "addgene_id": "90121", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90121.addgene-full.gb" }, @@ -13723,7 +17171,10 @@ "plasmid_name": "PB-Sox17", "sequence-type": "depositor-full", "addgene_id": "60669", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "file": "data/addgene_plasmids/60669.depositor-full.gb" }, @@ -13732,7 +17183,10 @@ "plasmid_name": "pDONR221-SLC25A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161465", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161465.addgene-full.gb" }, @@ -13741,7 +17195,10 @@ "plasmid_name": "pDONR223_NOTCH2_WT", "sequence-type": "addgene-full", "addgene_id": "82292", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82292.addgene-full.gb" }, @@ -13750,7 +17207,10 @@ "plasmid_name": "C232-E06: attB2r-mCherry-attB3", "sequence-type": "addgene-full", "addgene_id": "162903", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -13762,7 +17222,10 @@ "plasmid_name": "pDEST-HisMBP-SED1", "sequence-type": "addgene-full", "addgene_id": "178191", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-25736-8", + "https://www.ncbi.nlm.nih.gov/pubmed/34521831" + ], "kit": null, "file": "data/addgene_plasmids/178191.addgene-full.gb" }, @@ -13771,7 +17234,10 @@ "plasmid_name": "pAG416GAL-ccdB", "sequence-type": "addgene-full", "addgene_id": "14147", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -13783,7 +17249,10 @@ "plasmid_name": "pDONR223 GABARAPL2 WT", "sequence-type": "addgene-full", "addgene_id": "123086", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123086.addgene-full.gb" }, @@ -13792,7 +17261,10 @@ "plasmid_name": "pPB-cT3G-cERP2-RUNX2", "sequence-type": "addgene-full", "addgene_id": "192926", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192926.addgene-full.gb" }, @@ -13801,7 +17273,10 @@ "plasmid_name": "pENTR/pTER shLUC (w177-1)", "sequence-type": "depositor-full", "addgene_id": "17472", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17472.depositor-full.gb" }, @@ -13810,7 +17285,10 @@ "plasmid_name": "pCAB1-GW", "sequence-type": "addgene-full", "addgene_id": "209371", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209371.addgene-full.gb" }, @@ -13819,7 +17297,10 @@ "plasmid_name": "pDONR221_SLC6A17", "sequence-type": "addgene-full", "addgene_id": "132207", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132207.addgene-full.gb" }, @@ -13828,7 +17309,10 @@ "plasmid_name": "pGGEV_2'_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49303", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -13840,7 +17324,10 @@ "plasmid_name": "pQFD", "sequence-type": "depositor-full", "addgene_id": "48101", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.02296-13", + "https://www.ncbi.nlm.nih.gov/pubmed/23995928" + ], "kit": null, "file": "data/addgene_plasmids/48101.depositor-full.gb" }, @@ -13849,7 +17336,10 @@ "plasmid_name": "pAG416GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14363", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -13861,7 +17351,10 @@ "plasmid_name": "Flag-HA-USPL1", "sequence-type": "addgene-full", "addgene_id": "22607", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22607.addgene-full.gb" }, @@ -13870,7 +17363,10 @@ "plasmid_name": "pDONR223_AKT3_p.E17K", "sequence-type": "addgene-full", "addgene_id": "82172", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82172.addgene-full.gb" }, @@ -13879,7 +17375,10 @@ "plasmid_name": "pCPP5233", "sequence-type": "addgene-full", "addgene_id": "128715", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000388", + "https://www.ncbi.nlm.nih.gov/pubmed/19381254" + ], "kit": null, "file": "data/addgene_plasmids/128715.addgene-full.gb" }, @@ -13888,7 +17387,10 @@ "plasmid_name": "pDONR221-MFSD6L_STOP", "sequence-type": "depositor-full", "addgene_id": "161036", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161036.depositor-full.gb" }, @@ -13897,7 +17399,10 @@ "plasmid_name": "pDONR221_SLC19A2", "sequence-type": "addgene-full", "addgene_id": "132033", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132033.addgene-full.gb" }, @@ -13906,7 +17411,6 @@ "plasmid_name": "pDONR221-appb", "sequence-type": "addgene-full", "addgene_id": "192746", - "references": [], "kit": null, "file": "data/addgene_plasmids/192746.addgene-full.gb" }, @@ -13915,7 +17419,10 @@ "plasmid_name": "pENTR-Mm_MyoGEF(T575A)", "sequence-type": "addgene-full", "addgene_id": "136328", - "references": [], + "references": [ + "https://doi.org/10.1038/nm.4364", + "https://www.ncbi.nlm.nih.gov/pubmed/28692064" + ], "kit": null, "file": "data/addgene_plasmids/136328.addgene-full.gb" }, @@ -13924,7 +17431,6 @@ "plasmid_name": "pHAGE-CMV-Flag-CDK12_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135281", - "references": [], "kit": null, "file": "data/addgene_plasmids/135281.addgene-full.gb" }, @@ -13933,7 +17439,10 @@ "plasmid_name": "PLX_307 FDX1", "sequence-type": "addgene-full", "addgene_id": "184495", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abf0529", + "https://www.ncbi.nlm.nih.gov/pubmed/35298263" + ], "kit": null, "file": "data/addgene_plasmids/184495.addgene-full.gb" }, @@ -13942,7 +17451,9 @@ "plasmid_name": "pCW57.1-FOXM1b", "sequence-type": "addgene-full", "addgene_id": "68811", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26243836" + ], "kit": null, "file": "data/addgene_plasmids/68811.addgene-full.gb" }, @@ -13951,7 +17462,6 @@ "plasmid_name": "pCDNA3-hDHX58-VenusFlag", "sequence-type": "addgene-full", "addgene_id": "197624", - "references": [], "kit": null, "file": "data/addgene_plasmids/197624.addgene-full.gb" }, @@ -13960,7 +17470,10 @@ "plasmid_name": "pK7WG2-mitoTAL1-orf125", "sequence-type": "addgene-full", "addgene_id": "158736", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-019-0459-z", + "https://www.ncbi.nlm.nih.gov/pubmed/31285556" + ], "kit": null, "file": "data/addgene_plasmids/158736.addgene-full.gb" }, @@ -13969,7 +17482,10 @@ "plasmid_name": "pHAGE DN Cullin4B", "sequence-type": "addgene-full", "addgene_id": "41915", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2011.09.019", + "https://www.ncbi.nlm.nih.gov/pubmed/21963094" + ], "kit": null, "file": "data/addgene_plasmids/41915.addgene-full.gb" }, @@ -13978,7 +17494,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP5", "sequence-type": "addgene-full", "addgene_id": "141259", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141259.addgene-full.gb" }, @@ -13987,7 +17506,10 @@ "plasmid_name": "pTol2CG2-acta1:QFGal4-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155121", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155121.addgene-full.gb" }, @@ -13996,7 +17518,6 @@ "plasmid_name": "IDG_CACNG7_OE_1", "sequence-type": "addgene-full", "addgene_id": "161651", - "references": [], "kit": null, "file": "data/addgene_plasmids/161651.addgene-full.gb" }, @@ -14005,7 +17526,10 @@ "plasmid_name": "pSLIKneo 3XFLAG-S37A-GATA6-3XAU1_RNAi resistant", "sequence-type": "depositor-full", "addgene_id": "72617", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "file": "data/addgene_plasmids/72617.depositor-full.gb" }, @@ -14014,7 +17538,10 @@ "plasmid_name": "TFORF3542", "sequence-type": "depositor-full", "addgene_id": "145018", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145018.depositor-full.gb" }, @@ -14023,7 +17550,6 @@ "plasmid_name": "R777-E020 Hs.CCND2-nostop", "sequence-type": "depositor-full", "addgene_id": "70304", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -14035,7 +17561,10 @@ "plasmid_name": "pDONR223_B2M_p.M1L", "sequence-type": "addgene-full", "addgene_id": "81274", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -14047,7 +17576,10 @@ "plasmid_name": "MAC_C_PDK1", "sequence-type": "addgene-full", "addgene_id": "111672", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111672.addgene-full.gb" }, @@ -14056,7 +17588,10 @@ "plasmid_name": "pGWT35S-KON154-MXMT", "sequence-type": "addgene-full", "addgene_id": "182725", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182725.addgene-full.gb" }, @@ -14065,7 +17600,10 @@ "plasmid_name": "pHAGE-CCDC28A", "sequence-type": "addgene-full", "addgene_id": "116720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116720.addgene-full.gb" }, @@ -14074,7 +17612,10 @@ "plasmid_name": "pGWB453", "sequence-type": "depositor-full", "addgene_id": "74835", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74835.depositor-full.gb" }, @@ -14083,7 +17624,10 @@ "plasmid_name": "MAC_N_KLF8", "sequence-type": "addgene-full", "addgene_id": "167773", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167773.addgene-full.gb" }, @@ -14092,7 +17636,10 @@ "plasmid_name": "pDEST40-MCU-V5-HIS", "sequence-type": "depositor-full", "addgene_id": "31731", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "file": "data/addgene_plasmids/31731.depositor-full.gb" }, @@ -14101,7 +17648,10 @@ "plasmid_name": "pCFJ2300 - [1-2] ENTR - Fluor - ce-Dendra2(1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159869", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159869.addgene-full.gb" }, @@ -14110,7 +17660,10 @@ "plasmid_name": "pHAGE-PIK3CA-Q546P", "sequence-type": "addgene-full", "addgene_id": "116529", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116529.addgene-full.gb" }, @@ -14119,7 +17672,6 @@ "plasmid_name": "pDD362", "sequence-type": "addgene-full", "addgene_id": "137023", - "references": [], "kit": null, "file": "data/addgene_plasmids/137023.addgene-full.gb" }, @@ -14128,7 +17680,10 @@ "plasmid_name": "p5E_(-3kb)nrg1 type II", "sequence-type": "addgene-full", "addgene_id": "199393", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "file": "data/addgene_plasmids/199393.addgene-full.gb" }, @@ -14137,7 +17692,10 @@ "plasmid_name": "pAC84-pCR8-dCas9", "sequence-type": "depositor-full", "addgene_id": "48218", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/48218.depositor-full.gb" }, @@ -14146,7 +17704,10 @@ "plasmid_name": "pDONR221_SLC39A11", "sequence-type": "addgene-full", "addgene_id": "132141", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132141.addgene-full.gb" }, @@ -14155,7 +17716,6 @@ "plasmid_name": "MECP2 - R91W in pENTR", "sequence-type": "addgene-full", "addgene_id": "216593", - "references": [], "kit": null, "file": "data/addgene_plasmids/216593.addgene-full.gb" }, @@ -14164,7 +17724,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(WT)--IRES-hyg", "sequence-type": "addgene-full", "addgene_id": "128667", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128667.addgene-full.gb" }, @@ -14173,7 +17736,10 @@ "plasmid_name": "pDONR221-SFXN5_STOP", "sequence-type": "addgene-full", "addgene_id": "161458", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161458.addgene-full.gb" }, @@ -14182,7 +17748,10 @@ "plasmid_name": "Flag-HA-COPS5", "sequence-type": "addgene-full", "addgene_id": "22541", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22541.addgene-full.gb" }, @@ -14191,7 +17760,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0497-luc2", "sequence-type": "addgene-full", "addgene_id": "214643", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214643.addgene-full.gb" }, @@ -14200,7 +17772,10 @@ "plasmid_name": "pDONR223_STAT1_WT", "sequence-type": "addgene-full", "addgene_id": "82234", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82234.addgene-full.gb" }, @@ -14209,7 +17784,10 @@ "plasmid_name": "pDL66", "sequence-type": "addgene-full", "addgene_id": "175894", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175894.addgene-full.gb" }, @@ -14218,7 +17796,10 @@ "plasmid_name": "pENTR-L3-SpCas9-HF2-2A-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141050", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141050.addgene-full.gb" }, @@ -14227,7 +17808,6 @@ "plasmid_name": "R777-E250 Hs.RASGRP4-nostop", "sequence-type": "depositor-full", "addgene_id": "70534", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -14239,7 +17819,10 @@ "plasmid_name": "pAG414GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14287", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -14251,7 +17834,10 @@ "plasmid_name": "pDONR221-GATA6", "sequence-type": "addgene-full", "addgene_id": "101418", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101418.addgene-full.gb" }, @@ -14260,7 +17846,10 @@ "plasmid_name": "pDONR223_RHOA_p.Y42C", "sequence-type": "addgene-full", "addgene_id": "81306", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -14272,7 +17861,10 @@ "plasmid_name": "pDest-312 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161897", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -14284,7 +17876,10 @@ "plasmid_name": "MAC_N_LHX3", "sequence-type": "addgene-full", "addgene_id": "187735", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187735.addgene-full.gb" }, @@ -14293,7 +17888,10 @@ "plasmid_name": "pLenti-MTS-jAspSnFR3-mRuby3", "sequence-type": "addgene-full", "addgene_id": "203492", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "file": "data/addgene_plasmids/203492.addgene-full.gb" }, @@ -14302,7 +17900,10 @@ "plasmid_name": "pHAGE-PRKCE__CAMKMT", "sequence-type": "addgene-full", "addgene_id": "116832", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116832.addgene-full.gb" }, @@ -14311,7 +17912,10 @@ "plasmid_name": "pCPP5539", "sequence-type": "addgene-full", "addgene_id": "128728", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128728.addgene-full.gb" }, @@ -14320,7 +17924,10 @@ "plasmid_name": "pHAGE-RCAN2", "sequence-type": "addgene-full", "addgene_id": "116786", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116786.addgene-full.gb" }, @@ -14329,7 +17936,10 @@ "plasmid_name": "R701-X23-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) Q61L", "sequence-type": "addgene-full", "addgene_id": "159572", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159572.addgene-full.gb" }, @@ -14338,7 +17948,9 @@ "plasmid_name": "p5E-krt5", "sequence-type": "depositor-full", "addgene_id": "82585", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24643048" + ], "kit": null, "file": "data/addgene_plasmids/82585.depositor-full.gb" }, @@ -14347,7 +17959,10 @@ "plasmid_name": "tetO-ALN", "sequence-type": "addgene-full", "addgene_id": "43918", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0028719", + "https://www.ncbi.nlm.nih.gov/pubmed/22174877" + ], "kit": null, "file": "data/addgene_plasmids/43918.addgene-full.gb" }, @@ -14356,7 +17971,10 @@ "plasmid_name": "pDONR-IAA27_no stop", "sequence-type": "depositor-full", "addgene_id": "83860", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83860.depositor-full.gb" }, @@ -14365,7 +17983,10 @@ "plasmid_name": "R989-X79-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) M188L", "sequence-type": "addgene-full", "addgene_id": "159692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2018.06.012", + "https://www.ncbi.nlm.nih.gov/pubmed/29936133" + ], "kit": null, "file": "data/addgene_plasmids/159692.addgene-full.gb" }, @@ -14374,7 +17995,10 @@ "plasmid_name": "bactin:mKate2-ras", "sequence-type": "addgene-full", "addgene_id": "105963", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105963.addgene-full.gb" }, @@ -14383,7 +18007,10 @@ "plasmid_name": "pME-mVenus-CAAX", "sequence-type": "depositor-full", "addgene_id": "75153", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -14395,7 +18022,10 @@ "plasmid_name": "pHAGE-PIK3CA-E103_P104delEP", "sequence-type": "addgene-full", "addgene_id": "116466", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116466.addgene-full.gb" }, @@ -14404,7 +18034,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) VOPP1", "sequence-type": "addgene-full", "addgene_id": "107507", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107507.addgene-full.gb" }, @@ -14413,7 +18046,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP10", "sequence-type": "addgene-full", "addgene_id": "141264", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141264.addgene-full.gb" }, @@ -14422,7 +18058,10 @@ "plasmid_name": "pACT2-Kre33", "sequence-type": "addgene-full", "addgene_id": "99990", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99990.addgene-full.gb" }, @@ -14431,7 +18070,10 @@ "plasmid_name": "pcDNA5 rtTA BirA eIF4G +MIC", "sequence-type": "addgene-full", "addgene_id": "158790", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2020.01.006", + "https://www.ncbi.nlm.nih.gov/pubmed/31999954" + ], "kit": null, "file": "data/addgene_plasmids/158790.addgene-full.gb" }, @@ -14440,7 +18082,10 @@ "plasmid_name": "pSLIK 3xFLAG-TWIST2 neo", "sequence-type": "addgene-full", "addgene_id": "197936", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.277559.122", + "https://www.ncbi.nlm.nih.gov/pubmed/36810156" + ], "kit": null, "file": "data/addgene_plasmids/197936.addgene-full.gb" }, @@ -14449,7 +18094,9 @@ "plasmid_name": "Tol2-cmlc2-Trpa1b-2A-EGFP", "sequence-type": "addgene-full", "addgene_id": "106405", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28928472" + ], "kit": null, "file": "data/addgene_plasmids/106405.addgene-full.gb" }, @@ -14458,7 +18105,10 @@ "plasmid_name": "p414GPD-3xFLAG-Nop4 L306P", "sequence-type": "addgene-full", "addgene_id": "169262", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2017777118", + "https://www.ncbi.nlm.nih.gov/pubmed/33941690" + ], "kit": null, "file": "data/addgene_plasmids/169262.addgene-full.gb" }, @@ -14467,7 +18117,10 @@ "plasmid_name": "pJH202_pE12_hyCal9-eGFP", "sequence-type": "addgene-full", "addgene_id": "160415", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160415.addgene-full.gb" }, @@ -14476,7 +18129,10 @@ "plasmid_name": "pDONR221_SLC38A1", "sequence-type": "addgene-full", "addgene_id": "132095", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132095.addgene-full.gb" }, @@ -14485,7 +18141,10 @@ "plasmid_name": "pAAV-Syn-VARNAM", "sequence-type": "addgene-full", "addgene_id": "115554", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-018-0188-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30420685" + ], "kit": null, "file": "data/addgene_plasmids/115554.addgene-full.gb" }, @@ -14494,7 +18153,6 @@ "plasmid_name": "pLEX307-CTSS-blast", "sequence-type": "addgene-full", "addgene_id": "158470", - "references": [], "kit": null, "file": "data/addgene_plasmids/158470.addgene-full.gb" }, @@ -14503,7 +18161,10 @@ "plasmid_name": "PDEST-pSP172BSSPE-pFOGc::RfA-ECFP", "sequence-type": "addgene-full", "addgene_id": "186403", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186403.addgene-full.gb" }, @@ -14512,7 +18173,10 @@ "plasmid_name": "TFORF2948", "sequence-type": "addgene-full", "addgene_id": "144424", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144424.addgene-full.gb" }, @@ -14521,7 +18185,10 @@ "plasmid_name": "actc1b-2PH-PLCd-mKate2", "sequence-type": "addgene-full", "addgene_id": "109500", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109500.addgene-full.gb" }, @@ -14530,7 +18197,10 @@ "plasmid_name": "PB-TAC-ERP2-(N-HA)KRAS_G12D", "sequence-type": "addgene-full", "addgene_id": "201254", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2021.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/33915078" + ], "kit": null, "file": "data/addgene_plasmids/201254.addgene-full.gb" }, @@ -14539,7 +18209,10 @@ "plasmid_name": "pBSWHhc", "sequence-type": "addgene-full", "addgene_id": "133901", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/133901.addgene-full.gb" }, @@ -14548,7 +18221,10 @@ "plasmid_name": "pDONR221-SLC39A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161235", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161235.addgene-full.gb" }, @@ -14557,7 +18233,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.R172C", "sequence-type": "addgene-full", "addgene_id": "81610", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -14569,7 +18248,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep76", "sequence-type": "addgene-full", "addgene_id": "136863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136863.addgene-full.gb" }, @@ -14578,7 +18260,6 @@ "plasmid_name": "PSMD3_miniTurbo_Nterm", "sequence-type": "addgene-full", "addgene_id": "221527", - "references": [], "kit": null, "file": "data/addgene_plasmids/221527.addgene-full.gb" }, @@ -14587,7 +18268,10 @@ "plasmid_name": "pAG305GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14305", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -14599,7 +18283,10 @@ "plasmid_name": "pBBR5pemIKpBAD", "sequence-type": "addgene-full", "addgene_id": "129273", - "references": [], + "references": [ + "https://doi.org/10.1128/MRA.00769-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31488530" + ], "kit": null, "file": "data/addgene_plasmids/129273.addgene-full.gb" }, @@ -14608,7 +18295,10 @@ "plasmid_name": "pCM5.34", "sequence-type": "depositor-full", "addgene_id": "21390", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21390.depositor-full.gb" }, @@ -14617,7 +18307,10 @@ "plasmid_name": "TFORF3394", "sequence-type": "addgene-full", "addgene_id": "144870", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144870.addgene-full.gb" }, @@ -14626,7 +18319,10 @@ "plasmid_name": "pENTR4-FKBP12DD N-term A (B3-1)", "sequence-type": "depositor-full", "addgene_id": "17414", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17414.depositor-full.gb" }, @@ -14635,7 +18331,6 @@ "plasmid_name": "pGENT R2 GW R1 RUBY", "sequence-type": "addgene-full", "addgene_id": "225988", - "references": [], "kit": null, "file": "data/addgene_plasmids/225988.addgene-full.gb" }, @@ -14644,7 +18339,10 @@ "plasmid_name": "pcDNA3_AVPR2-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194372", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194372.addgene-full.gb" }, @@ -14653,7 +18351,10 @@ "plasmid_name": "pHAGE-ERBB2-P551L", "sequence-type": "addgene-full", "addgene_id": "116344", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116344.addgene-full.gb" }, @@ -14662,7 +18363,10 @@ "plasmid_name": "pDONR221_SLC10A3", "sequence-type": "addgene-full", "addgene_id": "131931", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131931.addgene-full.gb" }, @@ -14671,7 +18375,10 @@ "plasmid_name": "pSLIK 3xFLAG-KIF20A zeo", "sequence-type": "addgene-full", "addgene_id": "192322", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192322.addgene-full.gb" }, @@ -14680,7 +18387,10 @@ "plasmid_name": "pHWBF09exp", "sequence-type": "addgene-full", "addgene_id": "130833", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130833.addgene-full.gb" }, @@ -14689,7 +18399,10 @@ "plasmid_name": "pDONR223_FCGR3B_WT", "sequence-type": "addgene-full", "addgene_id": "82896", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82896.addgene-full.gb" }, @@ -14698,7 +18411,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-46", "sequence-type": "depositor-full", "addgene_id": "46655", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46655.depositor-full.gb" }, @@ -14707,7 +18423,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP1", "sequence-type": "addgene-full", "addgene_id": "158352", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158352.addgene-full.gb" }, @@ -14716,7 +18435,10 @@ "plasmid_name": "IO201: pMVP (R4-R3) mCherry", "sequence-type": "addgene-full", "addgene_id": "121732", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121732.addgene-full.gb" }, @@ -14725,7 +18447,10 @@ "plasmid_name": "pLX311_CdTag-HA_EmptyVector", "sequence-type": "addgene-full", "addgene_id": "221468", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221468.addgene-full.gb" }, @@ -14734,7 +18459,6 @@ "plasmid_name": "R777-E078 Hs.EXOC6-nostop", "sequence-type": "depositor-full", "addgene_id": "70362", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -14746,7 +18470,10 @@ "plasmid_name": "pDONR223_GRB7_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82942", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82942.addgene-full.gb" }, @@ -14755,7 +18482,10 @@ "plasmid_name": "pSGE_713_Ubi-3-Trl_dCP", "sequence-type": "depositor-full", "addgene_id": "71160", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71160.depositor-full.gb" }, @@ -14764,7 +18494,6 @@ "plasmid_name": "p663-UBC-V5-GSK3B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158166", - "references": [], "kit": null, "file": "data/addgene_plasmids/158166.addgene-full.gb" }, @@ -14773,7 +18502,10 @@ "plasmid_name": "pENTR R4-mCherry-R3", "sequence-type": "depositor-full", "addgene_id": "32311", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32311.depositor-full.gb" }, @@ -14782,7 +18514,10 @@ "plasmid_name": "pENTR1A_mmFbxw7_R505C (closed)", "sequence-type": "addgene-full", "addgene_id": "160103", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160103.addgene-full.gb" }, @@ -14791,7 +18526,10 @@ "plasmid_name": "pGWB511", "sequence-type": "depositor-full", "addgene_id": "74853", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74853.depositor-full.gb" }, @@ -14800,7 +18538,10 @@ "plasmid_name": "p7053 pHAGE-P-CMVt-N-HA-GAW-BICD2", "sequence-type": "addgene-full", "addgene_id": "100143", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100143.addgene-full.gb" }, @@ -14809,7 +18550,10 @@ "plasmid_name": "pDONR223_SCEL_WT", "sequence-type": "addgene-full", "addgene_id": "81870", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -14821,7 +18565,10 @@ "plasmid_name": "p{ie1-eGFP::FRT-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182175", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182175.addgene-full.gb" }, @@ -14830,7 +18577,10 @@ "plasmid_name": "plenti-CAG-IKZF2-V2-FLAG-IRES-GFP", "sequence-type": "depositor-full", "addgene_id": "69049", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/69049.depositor-full.gb" }, @@ -14839,7 +18589,10 @@ "plasmid_name": "pDR3.06", "sequence-type": "depositor-full", "addgene_id": "19368", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19368.depositor-full.gb" }, @@ -14848,7 +18601,6 @@ "plasmid_name": "p667-UBC-HIPK1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189886", - "references": [], "kit": null, "file": "data/addgene_plasmids/189886.addgene-full.gb" }, @@ -14857,7 +18609,10 @@ "plasmid_name": "pYPQ289 (ErCas12a)", "sequence-type": "addgene-full", "addgene_id": "138126", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138126.addgene-full.gb" }, @@ -14866,7 +18621,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP10_stop", "sequence-type": "addgene-full", "addgene_id": "168676", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168676.addgene-full.gb" }, @@ -14875,7 +18633,10 @@ "plasmid_name": "pLEX307-SARS-CoV-2-3CL", "sequence-type": "addgene-full", "addgene_id": "160278", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160278.addgene-full.gb" }, @@ -14884,7 +18645,10 @@ "plasmid_name": "pHAGE-BRAF-K601Q", "sequence-type": "addgene-full", "addgene_id": "116170", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116170.addgene-full.gb" }, @@ -14893,7 +18657,9 @@ "plasmid_name": "pDONR221-ADCK3(1of3)", "sequence-type": "addgene-full", "addgene_id": "166153", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166153.addgene-full.gb" }, @@ -14902,7 +18668,6 @@ "plasmid_name": "pT18mobsacB", "sequence-type": "addgene-full", "addgene_id": "72648", - "references": [], "kit": null, "file": "data/addgene_plasmids/72648.addgene-full.gb" }, @@ -14911,7 +18676,10 @@ "plasmid_name": "pAC1821_pCR8-SMN2-DN-RG6-SA", "sequence-type": "addgene-full", "addgene_id": "118655", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118655.addgene-full.gb" }, @@ -14920,7 +18688,6 @@ "plasmid_name": "R777-E321 Hs.SPRED1", "sequence-type": "depositor-full", "addgene_id": "70605", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -14932,7 +18699,10 @@ "plasmid_name": "p3E-rab23-DN", "sequence-type": "addgene-full", "addgene_id": "109734", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109734.addgene-full.gb" }, @@ -14941,7 +18711,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_K36E_R38E", "sequence-type": "depositor-full", "addgene_id": "65095", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65095.depositor-full.gb" }, @@ -14950,7 +18723,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.V332L", "sequence-type": "addgene-full", "addgene_id": "81424", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -14962,7 +18738,10 @@ "plasmid_name": "pcDNA3.2 TDP-43 NLS1 YFP", "sequence-type": "addgene-full", "addgene_id": "84912", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09320", + "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + ], "kit": null, "file": "data/addgene_plasmids/84912.addgene-full.gb" }, @@ -14971,7 +18750,6 @@ "plasmid_name": "pDEST-Spe4-RfA-Halotag-stop", "sequence-type": "addgene-full", "addgene_id": "186387", - "references": [], "kit": null, "file": "data/addgene_plasmids/186387.addgene-full.gb" }, @@ -14980,7 +18758,10 @@ "plasmid_name": "pLEX_305-N-dTAG-FRA1", "sequence-type": "addgene-full", "addgene_id": "188742", - "references": [], + "references": [ + "https://doi.org/10.1007/s00018-022-04638-y", + "https://www.ncbi.nlm.nih.gov/pubmed/36534167" + ], "kit": null, "file": "data/addgene_plasmids/188742.addgene-full.gb" }, @@ -14989,7 +18770,10 @@ "plasmid_name": "TFORF2943", "sequence-type": "addgene-full", "addgene_id": "144419", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144419.addgene-full.gb" }, @@ -14998,7 +18782,10 @@ "plasmid_name": "HNF1B_pLX307", "sequence-type": "addgene-full", "addgene_id": "98342", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98342.addgene-full.gb" }, @@ -15007,7 +18794,9 @@ "plasmid_name": "p5E-mmCdh5pro (JDW 1239)", "sequence-type": "addgene-full", "addgene_id": "224478", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224478.addgene-full.gb" }, @@ -15016,7 +18805,10 @@ "plasmid_name": "pDONR221-SLC25A44_STOP", "sequence-type": "addgene-full", "addgene_id": "161208", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161208.addgene-full.gb" }, @@ -15025,7 +18817,9 @@ "plasmid_name": "pMpGWB421", "sequence-type": "depositor-full", "addgene_id": "68686", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68686.depositor-full.gb" }, @@ -15034,7 +18828,10 @@ "plasmid_name": "pDONR223_BRAF_p.W450L", "sequence-type": "addgene-full", "addgene_id": "82830", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82830.addgene-full.gb" }, @@ -15043,7 +18840,10 @@ "plasmid_name": "p35S_GFP-EVDinter-GUS", "sequence-type": "addgene-full", "addgene_id": "167123", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.220723.117", + "https://www.ncbi.nlm.nih.gov/pubmed/28784835" + ], "kit": null, "file": "data/addgene_plasmids/167123.addgene-full.gb" }, @@ -15052,7 +18852,10 @@ "plasmid_name": "pDONR223_PPP2R1A_p.W140C", "sequence-type": "addgene-full", "addgene_id": "82784", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82784.addgene-full.gb" }, @@ -15061,7 +18864,10 @@ "plasmid_name": "pGGEV_-1_Linker", "sequence-type": "depositor-full", "addgene_id": "49281", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -15073,7 +18879,6 @@ "plasmid_name": "R777-E268 Hs.RASSF8-nostop", "sequence-type": "depositor-full", "addgene_id": "70552", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -15085,7 +18890,10 @@ "plasmid_name": "pJW4.28", "sequence-type": "depositor-full", "addgene_id": "62878", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62878.depositor-full.gb" }, @@ -15094,7 +18902,10 @@ "plasmid_name": "pENTR-ZmIAA25", "sequence-type": "addgene-full", "addgene_id": "188439", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188439.addgene-full.gb" }, @@ -15103,7 +18914,10 @@ "plasmid_name": "actc1b-mKate2-rab4a", "sequence-type": "addgene-full", "addgene_id": "109646", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109646.addgene-full.gb" }, @@ -15112,7 +18926,10 @@ "plasmid_name": "pCZGY3163", "sequence-type": "addgene-full", "addgene_id": "101248", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26376", + "https://www.ncbi.nlm.nih.gov/pubmed/28767038" + ], "kit": null, "file": "data/addgene_plasmids/101248.addgene-full.gb" }, @@ -15121,7 +18938,10 @@ "plasmid_name": "TFORF3286", "sequence-type": "addgene-full", "addgene_id": "144762", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144762.addgene-full.gb" }, @@ -15130,7 +18950,10 @@ "plasmid_name": "pDONR221 Grc3", "sequence-type": "depositor-full", "addgene_id": "63760", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63760.depositor-full.gb" }, @@ -15139,7 +18962,10 @@ "plasmid_name": "pDONR221_SLC18A2", "sequence-type": "addgene-full", "addgene_id": "131997", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131997.addgene-full.gb" }, @@ -15148,7 +18974,10 @@ "plasmid_name": "pDONR221-SLC25A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161173", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161173.addgene-full.gb" }, @@ -15157,7 +18986,10 @@ "plasmid_name": "pDONR223_GATA3_WT", "sequence-type": "addgene-full", "addgene_id": "81902", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -15169,7 +19001,10 @@ "plasmid_name": "pDONR221-ZNF705G", "sequence-type": "depositor-full", "addgene_id": "101505", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101505.depositor-full.gb" }, @@ -15178,7 +19013,10 @@ "plasmid_name": "pDONR221-SLC29A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161293", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161293.addgene-full.gb" }, @@ -15187,7 +19025,6 @@ "plasmid_name": "pLPC-C-SF-TAP-DEST-TLK1-WT", "sequence-type": "addgene-full", "addgene_id": "218829", - "references": [], "kit": null, "file": "data/addgene_plasmids/218829.addgene-full.gb" }, @@ -15196,7 +19033,10 @@ "plasmid_name": "pDONR-IAA10_no stop", "sequence-type": "depositor-full", "addgene_id": "83848", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83848.depositor-full.gb" }, @@ -15205,7 +19045,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NS12.9_nostop", "sequence-type": "addgene-full", "addgene_id": "168704", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168704.addgene-full.gb" }, @@ -15214,7 +19057,10 @@ "plasmid_name": "TFORF3006", "sequence-type": "addgene-full", "addgene_id": "144482", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144482.addgene-full.gb" }, @@ -15223,7 +19069,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 K243R", "sequence-type": "addgene-full", "addgene_id": "129301", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129301.addgene-full.gb" }, @@ -15232,7 +19081,10 @@ "plasmid_name": "pDONR223_TBL1XR1_p.T349M", "sequence-type": "addgene-full", "addgene_id": "81482", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -15244,7 +19096,10 @@ "plasmid_name": "plenti-UbcP-IKZF1-V2-3xHA-pGK-Pur", "sequence-type": "addgene-full", "addgene_id": "69051", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/69051.addgene-full.gb" }, @@ -15253,7 +19108,10 @@ "plasmid_name": "pXNubA22-Dest", "sequence-type": "addgene-full", "addgene_id": "105087", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-59745-289-2_14", + "https://www.ncbi.nlm.nih.gov/pubmed/19083185" + ], "kit": null, "file": "data/addgene_plasmids/105087.addgene-full.gb" }, @@ -15262,7 +19120,10 @@ "plasmid_name": "pDONR221-K202R-short-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "195399", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/195399.addgene-full.gb" }, @@ -15271,7 +19132,10 @@ "plasmid_name": "pHAGE-EGFR-D256Y", "sequence-type": "addgene-full", "addgene_id": "116236", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116236.addgene-full.gb" }, @@ -15280,7 +19144,10 @@ "plasmid_name": "pHAGE-APPSw;T719N", "sequence-type": "addgene-full", "addgene_id": "177094", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "file": "data/addgene_plasmids/177094.addgene-full.gb" }, @@ -15289,7 +19156,10 @@ "plasmid_name": "TFORF3426", "sequence-type": "addgene-full", "addgene_id": "144902", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144902.addgene-full.gb" }, @@ -15298,7 +19168,6 @@ "plasmid_name": "R777-E002 Hs.AKT1-nostop", "sequence-type": "depositor-full", "addgene_id": "70286", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -15310,7 +19179,9 @@ "plasmid_name": "pDONR221-SOD2(v2)", "sequence-type": "addgene-full", "addgene_id": "166215", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166215.addgene-full.gb" }, @@ -15319,7 +19190,10 @@ "plasmid_name": "pMH-SFB-BRCA1", "sequence-type": "addgene-full", "addgene_id": "99394", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0811159106", + "https://www.ncbi.nlm.nih.gov/pubmed/19369211" + ], "kit": null, "file": "data/addgene_plasmids/99394.addgene-full.gb" }, @@ -15328,7 +19202,10 @@ "plasmid_name": "TFORF3080", "sequence-type": "addgene-full", "addgene_id": "144556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144556.addgene-full.gb" }, @@ -15337,7 +19214,10 @@ "plasmid_name": "MultiMate-PE2 HEK3", "sequence-type": "addgene-full", "addgene_id": "206274", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206274.addgene-full.gb" }, @@ -15358,7 +19238,10 @@ "plasmid_name": "pDONR223_HIST1H1E_WT", "sequence-type": "addgene-full", "addgene_id": "81762", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -15370,7 +19253,10 @@ "plasmid_name": "pDONR221-SLC52A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161347", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161347.addgene-full.gb" }, @@ -15379,7 +19265,9 @@ "plasmid_name": "p3E-IRES-(n2)StayGold(c4)-pA (JDW 1364)", "sequence-type": "addgene-full", "addgene_id": "224537", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224537.addgene-full.gb" }, @@ -15388,7 +19276,10 @@ "plasmid_name": "pSW_1", "sequence-type": "depositor-full", "addgene_id": "71279", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71279.depositor-full.gb" }, @@ -15397,7 +19288,10 @@ "plasmid_name": "SIN-PGK-Cas9-WPRE", "sequence-type": "addgene-full", "addgene_id": "87886", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87886.addgene-full.gb" }, @@ -15406,7 +19300,9 @@ "plasmid_name": "pPB-cT3G-cERP2-RAD51", "sequence-type": "addgene-full", "addgene_id": "222567", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222567.addgene-full.gb" }, @@ -15415,7 +19311,6 @@ "plasmid_name": "R4-LexAp65-R3", "sequence-type": "depositor-full", "addgene_id": "41438", - "references": [], "kit": null, "file": "data/addgene_plasmids/41438.depositor-full.gb" }, @@ -15424,7 +19319,10 @@ "plasmid_name": "pME-foxc1a", "sequence-type": "addgene-full", "addgene_id": "132971", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132971.addgene-full.gb" }, @@ -15433,7 +19331,10 @@ "plasmid_name": "pBA cMYC-BPC4", "sequence-type": "addgene-full", "addgene_id": "118668", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118668.addgene-full.gb" }, @@ -15442,7 +19343,10 @@ "plasmid_name": "p3E-rab40c", "sequence-type": "addgene-full", "addgene_id": "109709", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109709.addgene-full.gb" }, @@ -15451,7 +19355,10 @@ "plasmid_name": "JI702: pMAGIC (L5-L4) hU6::SaCas9 gRNA scaffold; RIP", "sequence-type": "addgene-full", "addgene_id": "121820", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121820.addgene-full.gb" }, @@ -15460,7 +19367,10 @@ "plasmid_name": "LA802: pMVP (L3-L2) AID + WPRE", "sequence-type": "addgene-full", "addgene_id": "121794", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121794.addgene-full.gb" }, @@ -15469,7 +19379,10 @@ "plasmid_name": "pDONR223_GABRA6_p.P345S", "sequence-type": "addgene-full", "addgene_id": "81419", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -15481,7 +19394,10 @@ "plasmid_name": "pAG305GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14401", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -15493,7 +19409,10 @@ "plasmid_name": "pCW57.1 WT1 +378 ATG", "sequence-type": "addgene-full", "addgene_id": "217644", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "file": "data/addgene_plasmids/217644.addgene-full.gb" }, @@ -15502,7 +19421,6 @@ "plasmid_name": "IDG_CACNA2D2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161616", - "references": [], "kit": null, "file": "data/addgene_plasmids/161616.addgene-full.gb" }, @@ -15511,7 +19429,10 @@ "plasmid_name": "pDONRG_P4-P1R:TBA2p", "sequence-type": "addgene-full", "addgene_id": "128429", - "references": [], + "references": [ + "https://doi.org/10.1007/s11103-019-00909-8", + "https://www.ncbi.nlm.nih.gov/pubmed/31422517" + ], "kit": null, "file": "data/addgene_plasmids/128429.addgene-full.gb" }, @@ -15520,7 +19441,10 @@ "plasmid_name": "pDONR223-FGFR1", "sequence-type": "addgene-full", "addgene_id": "23922", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -15532,7 +19456,10 @@ "plasmid_name": "pGWB401NL3F10H", "sequence-type": "addgene-full", "addgene_id": "141285", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0454-4", + "https://www.ncbi.nlm.nih.gov/pubmed/31316580" + ], "kit": null, "file": "data/addgene_plasmids/141285.addgene-full.gb" }, @@ -15541,7 +19468,6 @@ "plasmid_name": "pENTR-Flippase-myc", "sequence-type": "addgene-full", "addgene_id": "139548", - "references": [], "kit": null, "file": "data/addgene_plasmids/139548.addgene-full.gb" }, @@ -15550,7 +19476,10 @@ "plasmid_name": "PE_2: Plas_lac_bD", "sequence-type": "addgene-full", "addgene_id": "113605", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113605.addgene-full.gb" }, @@ -15559,7 +19488,10 @@ "plasmid_name": "pMXs-hLIN28A", "sequence-type": "addgene-full", "addgene_id": "47902", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1310291110", + "https://www.ncbi.nlm.nih.gov/pubmed/23812749" + ], "kit": null, "file": "data/addgene_plasmids/47902.addgene-full.gb" }, @@ -15568,7 +19500,9 @@ "plasmid_name": "pLENTI6.3/AR-GC-E2325", "sequence-type": "addgene-full", "addgene_id": "85128", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27378372" + ], "kit": null, "file": "data/addgene_plasmids/85128.addgene-full.gb" }, @@ -15577,7 +19511,6 @@ "plasmid_name": "R777-E144 Hs.NFKB1-nostop", "sequence-type": "depositor-full", "addgene_id": "70428", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -15589,7 +19522,10 @@ "plasmid_name": "pGWB553", "sequence-type": "depositor-full", "addgene_id": "74883", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74883.depositor-full.gb" }, @@ -15598,7 +19534,10 @@ "plasmid_name": "pHAGE N' EGFP NAP1 FL IRES Blast", "sequence-type": "addgene-full", "addgene_id": "179100", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.202303082", + "https://www.ncbi.nlm.nih.gov/pubmed/38059900" + ], "kit": null, "file": "data/addgene_plasmids/179100.addgene-full.gb" }, @@ -15607,7 +19546,10 @@ "plasmid_name": "pHAGE-NRAS", "sequence-type": "addgene-full", "addgene_id": "116767", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116767.addgene-full.gb" }, @@ -15616,7 +19558,10 @@ "plasmid_name": "pDONR223-ZNF165", "sequence-type": "addgene-full", "addgene_id": "88444", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88444.addgene-full.gb" }, @@ -15625,7 +19570,10 @@ "plasmid_name": "C121-E06: gLuc", "sequence-type": "addgene-full", "addgene_id": "162890", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -15637,7 +19585,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16 E7 E80A/D81A", "sequence-type": "addgene-full", "addgene_id": "191548", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "file": "data/addgene_plasmids/191548.addgene-full.gb" }, @@ -15646,7 +19597,10 @@ "plasmid_name": "pDEST-CMV GFP-LC3B G120A", "sequence-type": "addgene-full", "addgene_id": "123115", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123115.addgene-full.gb" }, @@ -15655,7 +19609,10 @@ "plasmid_name": "pDONR221_SLC35E2B", "sequence-type": "addgene-full", "addgene_id": "132074", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132074.addgene-full.gb" }, @@ -15664,7 +19621,10 @@ "plasmid_name": "pZA13", "sequence-type": "addgene-full", "addgene_id": "158491", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158491.addgene-full.gb" }, @@ -15673,7 +19633,10 @@ "plasmid_name": "pCZGY553", "sequence-type": "addgene-full", "addgene_id": "110883", - "references": [], + "references": [ + "https://doi.org/10.1523/JNEUROSCI.5464-09.2010", + "https://www.ncbi.nlm.nih.gov/pubmed/20203177" + ], "kit": null, "file": "data/addgene_plasmids/110883.addgene-full.gb" }, @@ -15682,7 +19645,10 @@ "plasmid_name": "pAG413GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14166", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -15694,7 +19660,10 @@ "plasmid_name": "pAct-GW-HygroR", "sequence-type": "addgene-full", "addgene_id": "149610", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2021996118", + "https://www.ncbi.nlm.nih.gov/pubmed/33443210" + ], "kit": null, "file": "data/addgene_plasmids/149610.addgene-full.gb" }, @@ -15703,7 +19672,10 @@ "plasmid_name": "pHPyV6-607a", "sequence-type": "depositor-full", "addgene_id": "24727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2010.05.006", + "https://www.ncbi.nlm.nih.gov/pubmed/20542254" + ], "kit": null, "file": "data/addgene_plasmids/24727.depositor-full.gb" }, @@ -15712,7 +19684,10 @@ "plasmid_name": "pENTR-p38KTRClover", "sequence-type": "depositor-full", "addgene_id": "59142", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59142.depositor-full.gb" }, @@ -15721,7 +19696,10 @@ "plasmid_name": "pLentiCMVblast_SLC38A2_wt", "sequence-type": "addgene-full", "addgene_id": "156180", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0959", + "https://www.ncbi.nlm.nih.gov/pubmed/32341021" + ], "kit": null, "file": "data/addgene_plasmids/156180.addgene-full.gb" }, @@ -15730,7 +19708,10 @@ "plasmid_name": "pAC8_GWs-Lox (VE5589)", "sequence-type": "addgene-full", "addgene_id": "163769", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-021-04715-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35132103" + ], "kit": null, "file": "data/addgene_plasmids/163769.addgene-full.gb" }, @@ -15739,7 +19720,6 @@ "plasmid_name": "DDX3X in pENTR", "sequence-type": "addgene-full", "addgene_id": "216572", - "references": [], "kit": null, "file": "data/addgene_plasmids/216572.addgene-full.gb" }, @@ -15748,7 +19728,10 @@ "plasmid_name": "pHAGE-PTEN-Q298*", "sequence-type": "addgene-full", "addgene_id": "116628", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116628.addgene-full.gb" }, @@ -15757,7 +19740,10 @@ "plasmid_name": "pENTR223-BBLF4", "sequence-type": "addgene-full", "addgene_id": "195833", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195833.addgene-full.gb" }, @@ -15766,7 +19752,10 @@ "plasmid_name": "pENTR223-BZLF1(Zta)", "sequence-type": "addgene-full", "addgene_id": "195787", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195787.addgene-full.gb" }, @@ -15775,7 +19764,10 @@ "plasmid_name": "C512-E22: attB5r-mClover3-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162944", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -15787,7 +19779,10 @@ "plasmid_name": "MAC_N_SOX15", "sequence-type": "addgene-full", "addgene_id": "167792", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167792.addgene-full.gb" }, @@ -15796,7 +19791,6 @@ "plasmid_name": "g5s pD47", "sequence-type": "addgene-full", "addgene_id": "117451", - "references": [], "kit": null, "file": "data/addgene_plasmids/117451.addgene-full.gb" }, @@ -15805,7 +19799,10 @@ "plasmid_name": "pMuLE ENTR U6 stuffer sgRNA scaffold R4-R3", "sequence-type": "depositor-full", "addgene_id": "62131", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62131.depositor-full.gb" }, @@ -15814,7 +19811,10 @@ "plasmid_name": "pGC450", "sequence-type": "depositor-full", "addgene_id": "19691", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19691.depositor-full.gb" }, @@ -15823,7 +19823,10 @@ "plasmid_name": "pENTR-2B-Nkx2-5 Y191C", "sequence-type": "addgene-full", "addgene_id": "98613", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98613.addgene-full.gb" }, @@ -15832,7 +19835,10 @@ "plasmid_name": "HSF2BP_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176947", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176947.addgene-full.gb" }, @@ -15841,7 +19847,10 @@ "plasmid_name": "pCFJ2113 - [4-1] - Promoter - Pmlc-1 (w ATG)", "sequence-type": "addgene-full", "addgene_id": "159888", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000302", + "https://www.ncbi.nlm.nih.gov/pubmed/32908967" + ], "kit": null, "file": "data/addgene_plasmids/159888.addgene-full.gb" }, @@ -15850,7 +19859,6 @@ "plasmid_name": "R777-E182 Hs.PIK3R6-nostop", "sequence-type": "depositor-full", "addgene_id": "70466", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -15862,7 +19870,10 @@ "plasmid_name": "pDONR221_SLC51A", "sequence-type": "addgene-full", "addgene_id": "132240", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132240.addgene-full.gb" }, @@ -15871,7 +19882,10 @@ "plasmid_name": "pENTR-L3-oPRE-L2", "sequence-type": "depositor-full", "addgene_id": "32415", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32415.depositor-full.gb" }, @@ -15880,7 +19894,10 @@ "plasmid_name": "pENTRDsRedEx2", "sequence-type": "depositor-full", "addgene_id": "22451", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/22451.depositor-full.gb" }, @@ -15889,7 +19906,10 @@ "plasmid_name": "pVenusCfN", "sequence-type": "addgene-full", "addgene_id": "128566", - "references": [], + "references": [ + "https://doi.org/10.1177/1087057116659438", + "https://www.ncbi.nlm.nih.gov/pubmed/27455993" + ], "kit": null, "file": "data/addgene_plasmids/128566.addgene-full.gb" }, @@ -15898,7 +19918,10 @@ "plasmid_name": "pJRA103", "sequence-type": "addgene-full", "addgene_id": "209336", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209336.addgene-full.gb" }, @@ -15907,7 +19930,6 @@ "plasmid_name": "BRAF - C251Y in pENTR", "sequence-type": "addgene-full", "addgene_id": "216609", - "references": [], "kit": null, "file": "data/addgene_plasmids/216609.addgene-full.gb" }, @@ -15916,7 +19938,10 @@ "plasmid_name": "pMuLE_EXPR_CMV-eGFP_TOP-iRFP_PTCH1-mTurquoise2_CBF-tdTomato", "sequence-type": "addgene-full", "addgene_id": "113865", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "file": "data/addgene_plasmids/113865.addgene-full.gb" }, @@ -15925,7 +19950,10 @@ "plasmid_name": "pHAGE-PIK3CB-E1051K", "sequence-type": "addgene-full", "addgene_id": "116553", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116553.addgene-full.gb" }, @@ -15934,7 +19962,10 @@ "plasmid_name": "pDONR/zeo-MACROD2", "sequence-type": "addgene-full", "addgene_id": "172573", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172573.addgene-full.gb" }, @@ -15943,7 +19974,10 @@ "plasmid_name": "pDONR223-CKB", "sequence-type": "addgene-full", "addgene_id": "23742", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -15955,7 +19989,10 @@ "plasmid_name": "pLD-puro-Cc-PRDX5WT-VA", "sequence-type": "addgene-full", "addgene_id": "98688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "file": "data/addgene_plasmids/98688.addgene-full.gb" }, @@ -15964,7 +20001,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir28-2", "sequence-type": "depositor-full", "addgene_id": "46685", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46685.depositor-full.gb" }, @@ -15973,7 +20013,10 @@ "plasmid_name": "BirA-Myc_N_HME1", "sequence-type": "addgene-full", "addgene_id": "167709", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167709.addgene-full.gb" }, @@ -15982,7 +20025,6 @@ "plasmid_name": "pAG416GAL10-SHV_3CL", "sequence-type": "addgene-full", "addgene_id": "203473", - "references": [], "kit": null, "file": "data/addgene_plasmids/203473.addgene-full.gb" }, @@ -15991,7 +20033,10 @@ "plasmid_name": "pCFJ2475 - pEXP[Psmu-2 | mosase(PATCs) | gpd-2 tagRFP-T(myr, patcs) smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159813", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159813.addgene-full.gb" }, @@ -16000,7 +20045,10 @@ "plasmid_name": "pDest17_hnRNPA1_allW", "sequence-type": "addgene-full", "addgene_id": "224252", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.04.06.535902", + "https://www.ncbi.nlm.nih.gov/pubmed/37066350" + ], "kit": null, "file": "data/addgene_plasmids/224252.addgene-full.gb" }, @@ -16009,7 +20057,10 @@ "plasmid_name": "pDONR221-SFXN2_STOP", "sequence-type": "addgene-full", "addgene_id": "161422", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161422.addgene-full.gb" }, @@ -16018,7 +20069,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0488-luc2", "sequence-type": "addgene-full", "addgene_id": "214639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214639.addgene-full.gb" }, @@ -16039,7 +20093,10 @@ "plasmid_name": "pT2-cryR;snx5P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90166", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90166.addgene-full.gb" }, @@ -16048,7 +20105,10 @@ "plasmid_name": "pDONR221-FOXH1", "sequence-type": "depositor-full", "addgene_id": "101431", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101431.depositor-full.gb" }, @@ -16057,7 +20117,10 @@ "plasmid_name": "pJW4.02", "sequence-type": "addgene-full", "addgene_id": "131372", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/131372.addgene-full.gb" }, @@ -16066,7 +20129,10 @@ "plasmid_name": "pLX307-VHL(C162F)-3F-BirA", "sequence-type": "addgene-full", "addgene_id": "220149", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-024-01590-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38514884" + ], "kit": null, "file": "data/addgene_plasmids/220149.addgene-full.gb" }, @@ -16075,7 +20141,10 @@ "plasmid_name": "p3E-TurboID", "sequence-type": "addgene-full", "addgene_id": "166570", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "file": "data/addgene_plasmids/166570.addgene-full.gb" }, @@ -16084,7 +20153,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-dsRed_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135260", - "references": [], "kit": null, "file": "data/addgene_plasmids/135260.addgene-full.gb" }, @@ -16093,7 +20161,10 @@ "plasmid_name": "pDEST-HemmarI2", "sequence-type": "addgene-full", "addgene_id": "112815", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301736", + "https://www.ncbi.nlm.nih.gov/pubmed/30504366" + ], "kit": null, "file": "data/addgene_plasmids/112815.addgene-full.gb" }, @@ -16102,7 +20173,10 @@ "plasmid_name": "pDEST40-2XFL-Src-K298M-Y419F-Y530F", "sequence-type": "addgene-full", "addgene_id": "140321", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140321.addgene-full.gb" }, @@ -16111,7 +20185,10 @@ "plasmid_name": "pDONR221-PARP7", "sequence-type": "addgene-full", "addgene_id": "184474", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "file": "data/addgene_plasmids/184474.addgene-full.gb" }, @@ -16120,7 +20197,10 @@ "plasmid_name": "pTW120", "sequence-type": "addgene-full", "addgene_id": "115947", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115947.addgene-full.gb" }, @@ -16129,7 +20209,10 @@ "plasmid_name": "pCAG/ATP9A(E195Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209244", - "references": [], + "references": [ + "https://doi.org/10.1002/1873-3468.13629", + "https://www.ncbi.nlm.nih.gov/pubmed/31571211" + ], "kit": null, "file": "data/addgene_plasmids/209244.addgene-full.gb" }, @@ -16138,7 +20221,10 @@ "plasmid_name": "pDONR221-FOXD4L1", "sequence-type": "addgene-full", "addgene_id": "101510", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101510.addgene-full.gb" }, @@ -16147,7 +20233,10 @@ "plasmid_name": "pDONR223-ZNF545", "sequence-type": "addgene-full", "addgene_id": "88479", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88479.addgene-full.gb" }, @@ -16156,7 +20245,9 @@ "plasmid_name": "pMpGWB227", "sequence-type": "depositor-full", "addgene_id": "68618", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68618.depositor-full.gb" }, @@ -16165,7 +20256,10 @@ "plasmid_name": "pYPQ262m3", "sequence-type": "addgene-full", "addgene_id": "149556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2020.100101", + "https://www.ncbi.nlm.nih.gov/pubmed/33898973" + ], "kit": null, "file": "data/addgene_plasmids/149556.addgene-full.gb" }, @@ -16174,7 +20268,10 @@ "plasmid_name": "pDONR221-SLC41A1_STOP", "sequence-type": "depositor-full", "addgene_id": "161403", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161403.depositor-full.gb" }, @@ -16183,7 +20280,10 @@ "plasmid_name": "pDONRPEX18Tp-SceI-pheS", "sequence-type": "addgene-full", "addgene_id": "111608", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.03909-14", + "https://www.ncbi.nlm.nih.gov/pubmed/25795676" + ], "kit": null, "file": "data/addgene_plasmids/111608.addgene-full.gb" }, @@ -16192,7 +20292,10 @@ "plasmid_name": "pENTR-R4R3-2xmRuby-C", "sequence-type": "depositor-full", "addgene_id": "113756", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -16204,7 +20307,10 @@ "plasmid_name": "MAC_N_RAB9A", "sequence-type": "addgene-full", "addgene_id": "111693", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111693.addgene-full.gb" }, @@ -16213,7 +20319,10 @@ "plasmid_name": "pDL9", "sequence-type": "addgene-full", "addgene_id": "175907", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175907.addgene-full.gb" }, @@ -16222,7 +20331,10 @@ "plasmid_name": "pDONR221_SLC24A1", "sequence-type": "addgene-full", "addgene_id": "132049", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132049.addgene-full.gb" }, @@ -16231,7 +20343,10 @@ "plasmid_name": "Tol2-UAS-Dendra2-miR-223 sponge", "sequence-type": "addgene-full", "addgene_id": "97146", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "file": "data/addgene_plasmids/97146.addgene-full.gb" }, @@ -16240,7 +20355,10 @@ "plasmid_name": "W118-1_hTGM5-V5", "sequence-type": "addgene-full", "addgene_id": "180414", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180414.addgene-full.gb" }, @@ -16249,7 +20367,6 @@ "plasmid_name": "pOTTC155", "sequence-type": "depositor-full", "addgene_id": "50949", - "references": [], "kit": null, "file": "data/addgene_plasmids/50949.depositor-full.gb" }, @@ -16258,7 +20375,10 @@ "plasmid_name": "pYPQ-NF-L1-dMb2Cas12a", "sequence-type": "addgene-full", "addgene_id": "177683", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.202100571", + "https://www.ncbi.nlm.nih.gov/pubmed/35377968" + ], "kit": null, "file": "data/addgene_plasmids/177683.addgene-full.gb" }, @@ -16267,7 +20387,6 @@ "plasmid_name": "pAG426GAL-FES", "sequence-type": "addgene-full", "addgene_id": "203501", - "references": [], "kit": null, "file": "data/addgene_plasmids/203501.addgene-full.gb" }, @@ -16276,7 +20395,10 @@ "plasmid_name": "pDONR223_REG1A_p.P105T", "sequence-type": "addgene-full", "addgene_id": "81295", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -16288,7 +20410,10 @@ "plasmid_name": "pENTR2-R2-PBR-L4", "sequence-type": "addgene-full", "addgene_id": "141017", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141017.addgene-full.gb" }, @@ -16297,7 +20422,10 @@ "plasmid_name": "pYPQ142-ZmUbi-tRNA", "sequence-type": "addgene-full", "addgene_id": "158578", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00953-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34168320" + ], "kit": null, "file": "data/addgene_plasmids/158578.addgene-full.gb" }, @@ -16306,7 +20434,10 @@ "plasmid_name": "pHAGE-PTCH1-T1404A", "sequence-type": "addgene-full", "addgene_id": "116615", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116615.addgene-full.gb" }, @@ -16315,7 +20446,10 @@ "plasmid_name": "pINDUCER21-puro_Gateway-3xFLAG", "sequence-type": "addgene-full", "addgene_id": "172981", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172981.addgene-full.gb" }, @@ -16324,7 +20458,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 A114Q", "sequence-type": "addgene-full", "addgene_id": "175767", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175767.addgene-full.gb" }, @@ -16333,7 +20470,10 @@ "plasmid_name": "C453-E23: attB4-TRE3Gp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162979", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -16345,7 +20485,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RPS6KL1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170605", - "references": [], "kit": null, "file": "data/addgene_plasmids/170605.addgene-full.gb" }, @@ -16354,7 +20493,10 @@ "plasmid_name": "pMOD_C2911", "sequence-type": "addgene-full", "addgene_id": "161764", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac096", + "https://www.ncbi.nlm.nih.gov/pubmed/35471600" + ], "kit": null, "file": "data/addgene_plasmids/161764.addgene-full.gb" }, @@ -16363,7 +20505,10 @@ "plasmid_name": "MAC_C_INSR", "sequence-type": "addgene-full", "addgene_id": "187772", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187772.addgene-full.gb" }, @@ -16372,7 +20517,10 @@ "plasmid_name": "pDONR223_DLL1_WT", "sequence-type": "addgene-full", "addgene_id": "82108", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82108.addgene-full.gb" }, @@ -16381,7 +20529,9 @@ "plasmid_name": "pMpGWB328", "sequence-type": "depositor-full", "addgene_id": "68656", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68656.depositor-full.gb" }, @@ -16390,7 +20540,10 @@ "plasmid_name": "pDONR223_PPP6C_p.R264C", "sequence-type": "addgene-full", "addgene_id": "81341", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -16402,7 +20555,6 @@ "plasmid_name": "R777-E298 Hs.RPS6KB1-nostop", "sequence-type": "depositor-full", "addgene_id": "70582", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -16414,7 +20566,10 @@ "plasmid_name": "pAG304GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14231", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -16426,7 +20581,9 @@ "plasmid_name": "p3E-GFP no-pA", "sequence-type": "depositor-full", "addgene_id": "80813", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80813.depositor-full.gb" }, @@ -16435,7 +20592,10 @@ "plasmid_name": "TFORF3510", "sequence-type": "depositor-full", "addgene_id": "144986", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144986.depositor-full.gb" }, @@ -16444,7 +20604,10 @@ "plasmid_name": "Crimson/P2A-Control (pSLIK3)", "sequence-type": "addgene-full", "addgene_id": "113858", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0200955", + "https://www.ncbi.nlm.nih.gov/pubmed/30110337" + ], "kit": null, "file": "data/addgene_plasmids/113858.addgene-full.gb" }, @@ -16453,7 +20616,6 @@ "plasmid_name": "pAG426-GAL-Alpha-synuclein-A53T", "sequence-type": "addgene-full", "addgene_id": "181722", - "references": [], "kit": null, "file": "data/addgene_plasmids/181722.addgene-full.gb" }, @@ -16462,7 +20624,10 @@ "plasmid_name": "pAG414GPD-GaCYP722C(pYL777)", "sequence-type": "addgene-full", "addgene_id": "178290", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178290.addgene-full.gb" }, @@ -16471,7 +20636,10 @@ "plasmid_name": "pDONR223_BCL2L1_WT", "sequence-type": "addgene-full", "addgene_id": "82193", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82193.addgene-full.gb" }, @@ -16480,7 +20648,10 @@ "plasmid_name": "pDONR221_SLC38A6", "sequence-type": "addgene-full", "addgene_id": "132106", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132106.addgene-full.gb" }, @@ -16489,7 +20660,10 @@ "plasmid_name": "pTripZ RB1 WT-3XFLAG", "sequence-type": "addgene-full", "addgene_id": "209070", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-18-0389", + "https://www.ncbi.nlm.nih.gov/pubmed/30373918" + ], "kit": null, "file": "data/addgene_plasmids/209070.addgene-full.gb" }, @@ -16498,7 +20672,10 @@ "plasmid_name": "pDONR221_SLC30A3", "sequence-type": "addgene-full", "addgene_id": "132101", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132101.addgene-full.gb" }, @@ -16507,7 +20684,10 @@ "plasmid_name": "pWS081", "sequence-type": "addgene-full", "addgene_id": "123060", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123060.addgene-full.gb" }, @@ -16516,7 +20696,10 @@ "plasmid_name": "pENTR4-GFP-C1 (w392-1)", "sequence-type": "depositor-full", "addgene_id": "17396", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17396.depositor-full.gb" }, @@ -16525,7 +20708,10 @@ "plasmid_name": "pDestTol2pA ins:Apollo-NADP+ mVenus", "sequence-type": "addgene-full", "addgene_id": "210518", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adi8317", + "https://www.ncbi.nlm.nih.gov/pubmed/37792934" + ], "kit": null, "file": "data/addgene_plasmids/210518.addgene-full.gb" }, @@ -16534,7 +20720,10 @@ "plasmid_name": "pCMU-GAr", "sequence-type": "depositor-full", "addgene_id": "61172", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61172.depositor-full.gb" }, @@ -16543,7 +20732,10 @@ "plasmid_name": "pDONR223_PRKAA1_WT", "sequence-type": "addgene-full", "addgene_id": "82274", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82274.addgene-full.gb" }, @@ -16552,7 +20744,6 @@ "plasmid_name": "R777-E050 Hs.E2F3-nostop", "sequence-type": "depositor-full", "addgene_id": "70334", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -16564,7 +20755,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CLK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170579", - "references": [], "kit": null, "file": "data/addgene_plasmids/170579.addgene-full.gb" }, @@ -16573,7 +20763,10 @@ "plasmid_name": "pSEM266 - pEXP(mosTI, hygroR)[Pmex-5 | ceGFP(PATC, NLS) | tbb-2 3'UTR]", "sequence-type": "addgene-full", "addgene_id": "159829", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "file": "data/addgene_plasmids/159829.addgene-full.gb" }, @@ -16582,7 +20775,10 @@ "plasmid_name": "pAG414GPD-VvCYP722C(pYL852)", "sequence-type": "addgene-full", "addgene_id": "178297", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178297.addgene-full.gb" }, @@ -16591,7 +20787,10 @@ "plasmid_name": "tetO-PBX1", "sequence-type": "addgene-full", "addgene_id": "170699", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170699.addgene-full.gb" }, @@ -16600,7 +20799,10 @@ "plasmid_name": "pDONR223_BMI1_WT", "sequence-type": "addgene-full", "addgene_id": "82194", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82194.addgene-full.gb" }, @@ -16609,7 +20811,10 @@ "plasmid_name": "pGWB411", "sequence-type": "depositor-full", "addgene_id": "74805", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74805.depositor-full.gb" }, @@ -16618,7 +20823,10 @@ "plasmid_name": "pCM1.157", "sequence-type": "depositor-full", "addgene_id": "21388", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21388.depositor-full.gb" }, @@ -16627,7 +20835,10 @@ "plasmid_name": "pHAGE-PIK3CD-G124D", "sequence-type": "addgene-full", "addgene_id": "116569", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116569.addgene-full.gb" }, @@ -16636,7 +20847,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PRKACB_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170602", - "references": [], "kit": null, "file": "data/addgene_plasmids/170602.addgene-full.gb" }, @@ -16645,7 +20855,10 @@ "plasmid_name": "pTRANS-Pho2-1/2-2-Csy4", "sequence-type": "addgene-full", "addgene_id": "161763", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac096", + "https://www.ncbi.nlm.nih.gov/pubmed/35471600" + ], "kit": null, "file": "data/addgene_plasmids/161763.addgene-full.gb" }, @@ -16654,7 +20867,10 @@ "plasmid_name": "pDONR223_CPXCR1_p.E73K", "sequence-type": "addgene-full", "addgene_id": "81346", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -16666,7 +20882,10 @@ "plasmid_name": "MAC_C_RET", "sequence-type": "addgene-full", "addgene_id": "187775", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187775.addgene-full.gb" }, @@ -16675,7 +20894,10 @@ "plasmid_name": "pLentiPGK Puro DEST ERKKTRClover", "sequence-type": "addgene-full", "addgene_id": "90227", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "file": "data/addgene_plasmids/90227.addgene-full.gb" }, @@ -16684,7 +20906,9 @@ "plasmid_name": "pMpGWB133", "sequence-type": "depositor-full", "addgene_id": "68587", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68587.depositor-full.gb" }, @@ -16693,7 +20917,10 @@ "plasmid_name": "pUN381 - pTRV2-CHLH", "sequence-type": "addgene-full", "addgene_id": "203886", - "references": [], + "references": [ + "https://doi.org/10.1007/s00299-024-03208-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38743349" + ], "kit": null, "file": "data/addgene_plasmids/203886.addgene-full.gb" }, @@ -16702,7 +20929,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-OPTN", "sequence-type": "addgene-full", "addgene_id": "175760", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175760.addgene-full.gb" }, @@ -16711,7 +20941,10 @@ "plasmid_name": "pENTR223-BDLF2", "sequence-type": "addgene-full", "addgene_id": "195809", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195809.addgene-full.gb" }, @@ -16720,7 +20953,10 @@ "plasmid_name": "pUC-DEST-R3R4(R)", "sequence-type": "addgene-full", "addgene_id": "141010", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141010.addgene-full.gb" }, @@ -16729,7 +20965,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-LATS1", "sequence-type": "addgene-full", "addgene_id": "172986", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172986.addgene-full.gb" }, @@ -16738,7 +20977,10 @@ "plasmid_name": "pHAGE-PTCH1-G1212D", "sequence-type": "addgene-full", "addgene_id": "116612", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116612.addgene-full.gb" }, @@ -16747,7 +20989,10 @@ "plasmid_name": "pcDNA5FRT/TO-PNGase-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113490", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113490.addgene-full.gb" }, @@ -16756,7 +21001,6 @@ "plasmid_name": "pAG426GAL-KUNV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203506", - "references": [], "kit": null, "file": "data/addgene_plasmids/203506.addgene-full.gb" }, @@ -16765,7 +21009,10 @@ "plasmid_name": "pSGE_757_S2-1_GATA-to-HEY", "sequence-type": "depositor-full", "addgene_id": "71178", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71178.depositor-full.gb" }, @@ -16774,7 +21021,10 @@ "plasmid_name": "pENTR R4-GAL4-R3", "sequence-type": "depositor-full", "addgene_id": "32309", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32309.depositor-full.gb" }, @@ -16783,7 +21033,10 @@ "plasmid_name": "pDONR223_HRAS_p.A59T", "sequence-type": "addgene-full", "addgene_id": "81292", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -16795,7 +21048,10 @@ "plasmid_name": "pHAGE-MAN2B1-E149V", "sequence-type": "addgene-full", "addgene_id": "116426", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116426.addgene-full.gb" }, @@ -16804,7 +21060,10 @@ "plasmid_name": "pYPQ-NF-L2-dMb2Cas12a", "sequence-type": "addgene-full", "addgene_id": "177684", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.202100571", + "https://www.ncbi.nlm.nih.gov/pubmed/35377968" + ], "kit": null, "file": "data/addgene_plasmids/177684.addgene-full.gb" }, @@ -16813,7 +21072,10 @@ "plasmid_name": "pENTR-Site1", "sequence-type": "depositor-full", "addgene_id": "24512", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0009846", + "https://www.ncbi.nlm.nih.gov/pubmed/20352097" + ], "kit": null, "file": "data/addgene_plasmids/24512.depositor-full.gb" }, @@ -16822,7 +21084,10 @@ "plasmid_name": "W118-1_hTGM2-V5", "sequence-type": "addgene-full", "addgene_id": "180413", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180413.addgene-full.gb" }, @@ -16831,7 +21096,10 @@ "plasmid_name": "MAC_N_RS6", "sequence-type": "addgene-full", "addgene_id": "111694", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111694.addgene-full.gb" }, @@ -16840,7 +21108,10 @@ "plasmid_name": "pAG305GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14353", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -16852,7 +21123,10 @@ "plasmid_name": "pMXs-ms-Sox18", "sequence-type": "depositor-full", "addgene_id": "50782", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "file": "data/addgene_plasmids/50782.depositor-full.gb" }, @@ -16861,7 +21135,10 @@ "plasmid_name": "LIIalpha F 5-6", "sequence-type": "depositor-full", "addgene_id": "54354", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54354.depositor-full.gb" }, @@ -16870,7 +21147,10 @@ "plasmid_name": "pcDNA3.1_nHA Spinophilin", "sequence-type": "addgene-full", "addgene_id": "87122", - "references": [], + "references": [ + "https://doi.org/10.1155/2017/4153076", + "https://www.ncbi.nlm.nih.gov/pubmed/28634551" + ], "kit": null, "file": "data/addgene_plasmids/87122.addgene-full.gb" }, @@ -16879,7 +21159,6 @@ "plasmid_name": "pREP3xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79015", - "references": [], "kit": null, "file": "data/addgene_plasmids/79015.depositor-full.gb" }, @@ -16888,7 +21167,10 @@ "plasmid_name": "pCM5.66", "sequence-type": "depositor-full", "addgene_id": "19370", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19370.depositor-full.gb" }, @@ -16897,7 +21179,10 @@ "plasmid_name": "pCAG/ATP8B4(E170Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209243", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209243.addgene-full.gb" }, @@ -16906,7 +21191,10 @@ "plasmid_name": "pTW097", "sequence-type": "addgene-full", "addgene_id": "115940", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115940.addgene-full.gb" }, @@ -16915,7 +21203,6 @@ "plasmid_name": "pCLX-KRT7-GFP", "sequence-type": "addgene-full", "addgene_id": "216853", - "references": [], "kit": null, "file": "data/addgene_plasmids/216853.addgene-full.gb" }, @@ -16924,7 +21211,6 @@ "plasmid_name": "Hs.HRAS Q61K", "sequence-type": "depositor-full", "addgene_id": "83187", - "references": [], "kit": null, "file": "data/addgene_plasmids/83187.depositor-full.gb" }, @@ -16933,7 +21219,6 @@ "plasmid_name": "p663-UBC-TurboID-V5-CDK13_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135267", - "references": [], "kit": null, "file": "data/addgene_plasmids/135267.addgene-full.gb" }, @@ -16942,7 +21227,10 @@ "plasmid_name": "pCZGY405", "sequence-type": "addgene-full", "addgene_id": "172694", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26376", + "https://www.ncbi.nlm.nih.gov/pubmed/28767038" + ], "kit": null, "file": "data/addgene_plasmids/172694.addgene-full.gb" }, @@ -16951,7 +21239,10 @@ "plasmid_name": "pYPQ155", "sequence-type": "depositor-full", "addgene_id": "69306", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69306.depositor-full.gb" }, @@ -16960,7 +21251,10 @@ "plasmid_name": "pJW4.13", "sequence-type": "addgene-full", "addgene_id": "131375", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/131375.addgene-full.gb" }, @@ -16969,7 +21263,10 @@ "plasmid_name": "pDONR221-SLC25A26_STOP", "sequence-type": "addgene-full", "addgene_id": "161425", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161425.addgene-full.gb" }, @@ -16978,7 +21275,10 @@ "plasmid_name": "pDONR223_BCL2L11_WT", "sequence-type": "addgene-full", "addgene_id": "82249", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82249.addgene-full.gb" }, @@ -16999,7 +21299,10 @@ "plasmid_name": "pT2-cryR;dusp5P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90161", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90161.addgene-full.gb" }, @@ -17008,7 +21311,6 @@ "plasmid_name": "pAG416-GAL-FUS-R521C", "sequence-type": "addgene-full", "addgene_id": "181718", - "references": [], "kit": null, "file": "data/addgene_plasmids/181718.addgene-full.gb" }, @@ -17017,7 +21319,10 @@ "plasmid_name": "pMDJ22 - pEXP[Psmu-2 | Cre Recombinase (PATCs) | gpd-2 tagRFP-T smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159814", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159814.addgene-full.gb" }, @@ -17026,7 +21331,6 @@ "plasmid_name": "pAG416GAL10-SV-A_3C", "sequence-type": "addgene-full", "addgene_id": "203474", - "references": [], "kit": null, "file": "data/addgene_plasmids/203474.addgene-full.gb" }, @@ -17035,7 +21339,10 @@ "plasmid_name": "pHAGE-PIK3CB-E470K", "sequence-type": "addgene-full", "addgene_id": "116554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116554.addgene-full.gb" }, @@ -17044,7 +21351,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS-Ala148,Ala271 hygro", "sequence-type": "addgene-full", "addgene_id": "158639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158639.addgene-full.gb" }, @@ -17053,7 +21363,10 @@ "plasmid_name": "pMuLE_EXPR_CMV-eGFP_TOP-NLuc1.1_12GLI-FLuc_CBF-GLuc", "sequence-type": "addgene-full", "addgene_id": "113862", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "file": "data/addgene_plasmids/113862.addgene-full.gb" }, @@ -17062,7 +21375,10 @@ "plasmid_name": "pDONR/zeo-TARG1", "sequence-type": "addgene-full", "addgene_id": "172574", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172574.addgene-full.gb" }, @@ -17071,7 +21387,10 @@ "plasmid_name": "pGGEV_4_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49299", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -17083,7 +21402,10 @@ "plasmid_name": "pAM-PAT-ProCDKA;1 GW", "sequence-type": "addgene-full", "addgene_id": "79750", - "references": [], + "references": [ + "https://doi.org/10.1038/ng1694", + "https://www.ncbi.nlm.nih.gov/pubmed/16311592" + ], "kit": null, "file": "data/addgene_plasmids/79750.addgene-full.gb" }, @@ -17092,7 +21414,10 @@ "plasmid_name": "pDONR221_SLC9C1", "sequence-type": "addgene-full", "addgene_id": "132247", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132247.addgene-full.gb" }, @@ -17101,7 +21426,10 @@ "plasmid_name": "pLCS110", "sequence-type": "addgene-full", "addgene_id": "209331", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209331.addgene-full.gb" }, @@ -17110,7 +21438,10 @@ "plasmid_name": "MAC_N_ELF5", "sequence-type": "addgene-full", "addgene_id": "187748", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187748.addgene-full.gb" }, @@ -17119,7 +21450,10 @@ "plasmid_name": "pDONR223_HSPA5_WT", "sequence-type": "addgene-full", "addgene_id": "82132", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82132.addgene-full.gb" }, @@ -17128,7 +21462,10 @@ "plasmid_name": "pDONR221 Ssf1", "sequence-type": "depositor-full", "addgene_id": "63778", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63778.depositor-full.gb" }, @@ -17137,7 +21474,10 @@ "plasmid_name": "pENTR-2B-Nkx2-5 delta HD-G8", "sequence-type": "addgene-full", "addgene_id": "98614", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98614.addgene-full.gb" }, @@ -17146,7 +21486,6 @@ "plasmid_name": "g7s pDONR", "sequence-type": "addgene-full", "addgene_id": "117456", - "references": [], "kit": null, "file": "data/addgene_plasmids/117456.addgene-full.gb" }, @@ -17155,7 +21494,10 @@ "plasmid_name": "TMEM50B_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176940", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176940.addgene-full.gb" }, @@ -17164,7 +21506,10 @@ "plasmid_name": "UAS::PTPRFa.1-DN-GFP", "sequence-type": "depositor-full", "addgene_id": "37110", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.01.040", + "https://www.ncbi.nlm.nih.gov/pubmed/22326027" + ], "kit": null, "file": "data/addgene_plasmids/37110.depositor-full.gb" }, @@ -17173,7 +21518,10 @@ "plasmid_name": "pENTR223-BORF2", "sequence-type": "addgene-full", "addgene_id": "195834", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195834.addgene-full.gb" }, @@ -17182,7 +21530,10 @@ "plasmid_name": "pENTR223-BHRF1", "sequence-type": "addgene-full", "addgene_id": "195780", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195780.addgene-full.gb" }, @@ -17191,7 +21542,10 @@ "plasmid_name": "pDONR-IAA13_no stop", "sequence-type": "depositor-full", "addgene_id": "83850", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83850.depositor-full.gb" }, @@ -17200,7 +21554,10 @@ "plasmid_name": "C512-E15: attB5r-mVenus-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162943", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -17212,7 +21569,10 @@ "plasmid_name": "pDONR_P2R-P3_3'arm_apobb.1", "sequence-type": "addgene-full", "addgene_id": "128681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11259-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31366908" + ], "kit": null, "file": "data/addgene_plasmids/128681.addgene-full.gb" }, @@ -17221,7 +21581,6 @@ "plasmid_name": "DDX3X - R145C in PENTR", "sequence-type": "addgene-full", "addgene_id": "216575", - "references": [], "kit": null, "file": "data/addgene_plasmids/216575.addgene-full.gb" }, @@ -17230,7 +21589,10 @@ "plasmid_name": "pME-Gal80ts", "sequence-type": "addgene-full", "addgene_id": "51619", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.22734", + "https://www.ncbi.nlm.nih.gov/pubmed/21905164" + ], "kit": null, "file": "data/addgene_plasmids/51619.addgene-full.gb" }, @@ -17239,7 +21601,10 @@ "plasmid_name": "pcDNA5 CMV 3xFG eIF4G1 +MIC", "sequence-type": "addgene-full", "addgene_id": "158776", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2020.01.006", + "https://www.ncbi.nlm.nih.gov/pubmed/31999954" + ], "kit": null, "file": "data/addgene_plasmids/158776.addgene-full.gb" }, @@ -17248,7 +21613,10 @@ "plasmid_name": "PE_26: Para_Lac_Tet_eG::sfYFP", "sequence-type": "addgene-full", "addgene_id": "104887", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104887.addgene-full.gb" }, @@ -17257,7 +21625,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-GABARAPL1-GFP", "sequence-type": "addgene-full", "addgene_id": "123112", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123112.addgene-full.gb" }, @@ -17266,7 +21637,10 @@ "plasmid_name": "MEN2A-MAC", "sequence-type": "addgene-full", "addgene_id": "139634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139634.addgene-full.gb" }, @@ -17275,7 +21649,6 @@ "plasmid_name": "R777-E220 Hs.RALBP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70504", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -17287,7 +21660,10 @@ "plasmid_name": "pDONR221_SLC35F6", "sequence-type": "addgene-full", "addgene_id": "132073", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132073.addgene-full.gb" }, @@ -17296,7 +21672,10 @@ "plasmid_name": "pENTR-L1-CAMKII(1.3)-L4", "sequence-type": "depositor-full", "addgene_id": "32577", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32577.depositor-full.gb" }, @@ -17317,7 +21696,10 @@ "plasmid_name": "pcDNA5-FRT/TO-N-mEGFP-PARP6", "sequence-type": "addgene-full", "addgene_id": "178005", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "file": "data/addgene_plasmids/178005.addgene-full.gb" }, @@ -17326,7 +21708,10 @@ "plasmid_name": "pmTol-InsUAS-6MTnlstdTomato2A-Dusp6DM-CC", "sequence-type": "depositor-full", "addgene_id": "67687", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137919", + "https://www.ncbi.nlm.nih.gov/pubmed/27578780" + ], "kit": null, "file": "data/addgene_plasmids/67687.depositor-full.gb" }, @@ -17335,7 +21720,10 @@ "plasmid_name": "C122-E17: mPlum", "sequence-type": "addgene-full", "addgene_id": "162897", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -17347,7 +21735,10 @@ "plasmid_name": "pLenti_CMV_Puro_SFB_GNB1L", "sequence-type": "addgene-full", "addgene_id": "224381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.07.004", + "https://www.ncbi.nlm.nih.gov/pubmed/37541219" + ], "kit": null, "file": "data/addgene_plasmids/224381.addgene-full.gb" }, @@ -17356,7 +21747,10 @@ "plasmid_name": "DSCAM_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53906", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53906.addgene-full.gb" }, @@ -17365,7 +21759,10 @@ "plasmid_name": "pHAGE-MAPK1", "sequence-type": "addgene-full", "addgene_id": "116760", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116760.addgene-full.gb" }, @@ -17374,7 +21771,10 @@ "plasmid_name": "pDONR223-KDR", "sequence-type": "addgene-full", "addgene_id": "23925", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -17386,7 +21786,10 @@ "plasmid_name": "pHAGE-PIK3CA-E542Q", "sequence-type": "addgene-full", "addgene_id": "116480", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116480.addgene-full.gb" }, @@ -17395,7 +21798,10 @@ "plasmid_name": "pDONR221_SLC4A10", "sequence-type": "addgene-full", "addgene_id": "132308", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132308.addgene-full.gb" }, @@ -17404,7 +21810,10 @@ "plasmid_name": "PE_5: Pxyl_Lac_bD", "sequence-type": "addgene-full", "addgene_id": "113602", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113602.addgene-full.gb" }, @@ -17413,7 +21822,10 @@ "plasmid_name": "pDONR221-ZNF7", "sequence-type": "addgene-full", "addgene_id": "88817", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88817.addgene-full.gb" }, @@ -17422,7 +21834,10 @@ "plasmid_name": "pCW57.1 WT1 +1 ATG", "sequence-type": "addgene-full", "addgene_id": "217643", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "file": "data/addgene_plasmids/217643.addgene-full.gb" }, @@ -17431,7 +21846,10 @@ "plasmid_name": "pEGFP\u2010RNASEH2B", "sequence-type": "addgene-full", "addgene_id": "108697", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkq980", + "https://www.ncbi.nlm.nih.gov/pubmed/21245041" + ], "kit": null, "file": "data/addgene_plasmids/108697.addgene-full.gb" }, @@ -17440,7 +21858,10 @@ "plasmid_name": "IH601: pMAGIC (R4-R3) NLS-Sa Cas9-NLS", "sequence-type": "addgene-full", "addgene_id": "121827", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121827.addgene-full.gb" }, @@ -17449,7 +21870,10 @@ "plasmid_name": "pENTR223-GFP", "sequence-type": "addgene-full", "addgene_id": "198589", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198589.addgene-full.gb" }, @@ -17458,7 +21882,10 @@ "plasmid_name": "pDONR221-SLC35B1_STOP", "sequence-type": "depositor-full", "addgene_id": "161265", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161265.depositor-full.gb" }, @@ -17467,7 +21894,10 @@ "plasmid_name": "KN501: pMVP (L3-L2) ecDHFR DD + WPRE", "sequence-type": "addgene-full", "addgene_id": "121793", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121793.addgene-full.gb" }, @@ -17476,7 +21906,10 @@ "plasmid_name": "pAG426GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14419", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -17488,7 +21921,9 @@ "plasmid_name": "pDONR221-DNAJB6", "sequence-type": "addgene-full", "addgene_id": "166169", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166169.addgene-full.gb" }, @@ -17497,7 +21932,10 @@ "plasmid_name": "CBR1_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177008", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/177008.addgene-full.gb" }, @@ -17506,7 +21944,10 @@ "plasmid_name": "908J", "sequence-type": "addgene-full", "addgene_id": "160242", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160242.addgene-full.gb" }, @@ -17515,7 +21956,10 @@ "plasmid_name": "pTone-gata2aECE-Kaede", "sequence-type": "addgene-full", "addgene_id": "132976", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132976.addgene-full.gb" }, @@ -17524,7 +21968,6 @@ "plasmid_name": "R777-E146 Hs.NRAS-nostop", "sequence-type": "depositor-full", "addgene_id": "70430", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -17536,7 +21979,10 @@ "plasmid_name": "pENTR-D-Topo-kcnk17", "sequence-type": "addgene-full", "addgene_id": "208999", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208999.addgene-full.gb" }, @@ -17545,7 +21991,9 @@ "plasmid_name": "pPB-cT3G-cERP2-ZNF541", "sequence-type": "addgene-full", "addgene_id": "222560", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222560.addgene-full.gb" }, @@ -17554,7 +22002,10 @@ "plasmid_name": "pPB-MPP8_Flag2-Blast", "sequence-type": "addgene-full", "addgene_id": "175038", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-23308-4", + "https://www.ncbi.nlm.nih.gov/pubmed/34031396" + ], "kit": null, "file": "data/addgene_plasmids/175038.addgene-full.gb" }, @@ -17563,7 +22014,10 @@ "plasmid_name": "pAG414GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14383", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -17575,7 +22029,10 @@ "plasmid_name": "pMuLE ENTR SV40 LacZ L5-L2", "sequence-type": "depositor-full", "addgene_id": "62167", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62167.depositor-full.gb" }, @@ -17584,7 +22041,10 @@ "plasmid_name": "LIIIalpha F C-D", "sequence-type": "depositor-full", "addgene_id": "54384", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54384.depositor-full.gb" }, @@ -17593,7 +22053,10 @@ "plasmid_name": "MultiMate-PE3 HEK3", "sequence-type": "addgene-full", "addgene_id": "206273", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206273.addgene-full.gb" }, @@ -17614,7 +22077,10 @@ "plasmid_name": "pDONR223_DNMT3A_WT", "sequence-type": "addgene-full", "addgene_id": "81765", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -17626,7 +22092,10 @@ "plasmid_name": "pDONR221-SLC8A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161340", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161340.addgene-full.gb" }, @@ -17635,7 +22104,9 @@ "plasmid_name": "p3E-V5-mClover3-pA (JDW 1318)", "sequence-type": "addgene-full", "addgene_id": "224530", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224530.addgene-full.gb" }, @@ -17644,7 +22115,9 @@ "plasmid_name": "pDONR221-SNRNP70", "sequence-type": "addgene-full", "addgene_id": "166212", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166212.addgene-full.gb" }, @@ -17653,7 +22126,10 @@ "plasmid_name": "AAEL003473 MIP R", "sequence-type": "addgene-full", "addgene_id": "115398", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115398.addgene-full.gb" }, @@ -17662,7 +22138,10 @@ "plasmid_name": "pMH-SFB-USP7", "sequence-type": "addgene-full", "addgene_id": "99393", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "file": "data/addgene_plasmids/99393.addgene-full.gb" }, @@ -17671,7 +22150,10 @@ "plasmid_name": "pDD363", "sequence-type": "addgene-full", "addgene_id": "91829", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "file": "data/addgene_plasmids/91829.addgene-full.gb" }, @@ -17680,7 +22162,10 @@ "plasmid_name": "TFORF3075", "sequence-type": "addgene-full", "addgene_id": "144551", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144551.addgene-full.gb" }, @@ -17689,7 +22174,10 @@ "plasmid_name": "pHAGE-EGFR-A611T", "sequence-type": "addgene-full", "addgene_id": "116231", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116231.addgene-full.gb" }, @@ -17698,7 +22186,10 @@ "plasmid_name": "pLVX-UBE3B\u0394IQ-HA-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107350", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "file": "data/addgene_plasmids/107350.addgene-full.gb" }, @@ -17707,7 +22198,10 @@ "plasmid_name": "TFORF3429", "sequence-type": "addgene-full", "addgene_id": "144905", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144905.addgene-full.gb" }, @@ -17716,7 +22210,10 @@ "plasmid_name": "pDONR223_ACAA1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82978", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82978.addgene-full.gb" }, @@ -17725,7 +22222,10 @@ "plasmid_name": "pDONR223_EYS_p.R587I", "sequence-type": "addgene-full", "addgene_id": "81485", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -17737,7 +22237,10 @@ "plasmid_name": "KP201: pMVP (L5-L4) eGFP-P2A", "sequence-type": "addgene-full", "addgene_id": "121708", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121708.addgene-full.gb" }, @@ -17746,7 +22249,6 @@ "plasmid_name": "Hs.KRAS4b T35S", "sequence-type": "depositor-full", "addgene_id": "83157", - "references": [], "kit": null, "file": "data/addgene_plasmids/83157.depositor-full.gb" }, @@ -17755,7 +22257,10 @@ "plasmid_name": "MAC-SARS-CoV-2 E", "sequence-type": "addgene-full", "addgene_id": "158368", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158368.addgene-full.gb" }, @@ -17764,7 +22269,10 @@ "plasmid_name": "TFORF3009", "sequence-type": "addgene-full", "addgene_id": "144485", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144485.addgene-full.gb" }, @@ -17773,7 +22281,10 @@ "plasmid_name": "pDONR221 Cas9-RFC4", "sequence-type": "addgene-full", "addgene_id": "183199", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "file": "data/addgene_plasmids/183199.addgene-full.gb" }, @@ -17782,7 +22293,10 @@ "plasmid_name": "pCSDest2-2XNLS-SpCas9-WT-NLS-3XHA-NLS-TALentry", "sequence-type": "depositor-full", "addgene_id": "69232", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3624", + "https://www.ncbi.nlm.nih.gov/pubmed/26480473" + ], "kit": null, "file": "data/addgene_plasmids/69232.depositor-full.gb" }, @@ -17791,7 +22305,10 @@ "plasmid_name": "pDONR221-SLC27A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161294", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161294.addgene-full.gb" }, @@ -17800,7 +22317,10 @@ "plasmid_name": "pDONR223_WISP2_WT", "sequence-type": "addgene-full", "addgene_id": "81905", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -17812,7 +22332,6 @@ "plasmid_name": "pDest-544", "sequence-type": "depositor-full", "addgene_id": "11519", - "references": [], "kit": null, "file": "data/addgene_plasmids/11519.depositor-full.gb" }, @@ -17821,7 +22340,10 @@ "plasmid_name": "pDONR223_YTHDC1_p.E483Q", "sequence-type": "addgene-full", "addgene_id": "81551", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -17833,7 +22355,6 @@ "plasmid_name": "pBABEpuro-ARAF_S214T", "sequence-type": "depositor-full", "addgene_id": "51079", - "references": [], "kit": null, "file": "data/addgene_plasmids/51079.depositor-full.gb" }, @@ -17842,7 +22363,10 @@ "plasmid_name": "actc1b-mKate2-rab40c", "sequence-type": "addgene-full", "addgene_id": "109641", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109641.addgene-full.gb" }, @@ -17851,7 +22375,10 @@ "plasmid_name": "pDONR221_SLC24A4", "sequence-type": "addgene-full", "addgene_id": "131990", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131990.addgene-full.gb" }, @@ -17860,7 +22387,10 @@ "plasmid_name": "pMuLE ENTR U6 stuffer sgRNA scaffold L5-L4", "sequence-type": "depositor-full", "addgene_id": "62129", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62129.depositor-full.gb" }, @@ -17869,7 +22399,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-SV40 NLS", "sequence-type": "addgene-full", "addgene_id": "192318", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192318.addgene-full.gb" }, @@ -17878,7 +22411,10 @@ "plasmid_name": "pT3-EF1aH c-Met", "sequence-type": "addgene-full", "addgene_id": "86498", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0706578104", + "https://www.ncbi.nlm.nih.gov/pubmed/17785413" + ], "kit": null, "file": "data/addgene_plasmids/86498.addgene-full.gb" }, @@ -17887,7 +22423,10 @@ "plasmid_name": "pDONR223_BRAF_p.L485S", "sequence-type": "addgene-full", "addgene_id": "82837", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82837.addgene-full.gb" }, @@ -17896,7 +22435,10 @@ "plasmid_name": "pEBTetBl-CLIP-KIAA0841", "sequence-type": "addgene-full", "addgene_id": "136859", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136859.addgene-full.gb" }, @@ -17905,7 +22447,10 @@ "plasmid_name": "pDONR223_ZBTB24_p.G568C", "sequence-type": "addgene-full", "addgene_id": "82783", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82783.addgene-full.gb" }, @@ -17914,7 +22459,10 @@ "plasmid_name": "pDONR221-FOXE3", "sequence-type": "depositor-full", "addgene_id": "101429", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101429.depositor-full.gb" }, @@ -17923,7 +22471,10 @@ "plasmid_name": "APOBEC3G_pLX307", "sequence-type": "addgene-full", "addgene_id": "98345", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98345.addgene-full.gb" }, @@ -17932,7 +22483,10 @@ "plasmid_name": "pDONR221-kcnj2a", "sequence-type": "addgene-full", "addgene_id": "173127", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173127.addgene-full.gb" }, @@ -17941,7 +22495,9 @@ "plasmid_name": "pMpGWB103", "sequence-type": "depositor-full", "addgene_id": "68557", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68557.depositor-full.gb" }, @@ -17950,7 +22506,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mEos4b-RfA", "sequence-type": "addgene-full", "addgene_id": "186380", - "references": [], "kit": null, "file": "data/addgene_plasmids/186380.addgene-full.gb" }, @@ -17959,7 +22514,9 @@ "plasmid_name": "pME-GFP-P2A", "sequence-type": "addgene-full", "addgene_id": "80807", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80807.addgene-full.gb" }, @@ -17968,7 +22525,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-ALKBH5", "sequence-type": "depositor-full", "addgene_id": "38073", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38073.depositor-full.gb" }, @@ -17977,7 +22537,10 @@ "plasmid_name": "pDONR P4-P1R-ECFP", "sequence-type": "depositor-full", "addgene_id": "48352", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -17989,7 +22552,10 @@ "plasmid_name": "pDONR223_GABRA6_p.R238K", "sequence-type": "addgene-full", "addgene_id": "81423", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -18001,7 +22567,6 @@ "plasmid_name": "pmCellFree_KA3_Cterm-mCherry", "sequence-type": "addgene-full", "addgene_id": "169408", - "references": [], "kit": null, "file": "data/addgene_plasmids/169408.addgene-full.gb" }, @@ -18010,7 +22575,9 @@ "plasmid_name": "pDONR221-ATP6V0D1", "sequence-type": "addgene-full", "addgene_id": "166154", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166154.addgene-full.gb" }, @@ -18019,7 +22586,10 @@ "plasmid_name": "pHAGE-EGFR-R776C", "sequence-type": "addgene-full", "addgene_id": "116297", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116297.addgene-full.gb" }, @@ -18028,7 +22598,10 @@ "plasmid_name": "LA901: pMAGIC (L3-L2) 3x HA epitope tag + polyA; hU6::Sp/xCas9 TRE#1 gRNA", "sequence-type": "addgene-full", "addgene_id": "131756", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/131756.addgene-full.gb" }, @@ -18037,7 +22610,10 @@ "plasmid_name": "pAC1818_pCR8-gRG6-SA", "sequence-type": "addgene-full", "addgene_id": "118652", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118652.addgene-full.gb" }, @@ -18046,7 +22622,10 @@ "plasmid_name": "p3E-rab6a-CA", "sequence-type": "addgene-full", "addgene_id": "109733", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109733.addgene-full.gb" }, @@ -18055,7 +22634,10 @@ "plasmid_name": "pCS2 LRP6-APEX2-Ires-eGFP-PAC", "sequence-type": "addgene-full", "addgene_id": "180142", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-78019-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33299006" + ], "kit": null, "file": "data/addgene_plasmids/180142.addgene-full.gb" }, @@ -18064,7 +22646,10 @@ "plasmid_name": "TFORF3141", "sequence-type": "addgene-full", "addgene_id": "144617", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144617.addgene-full.gb" }, @@ -18073,7 +22658,10 @@ "plasmid_name": "pAG416GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14267", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -18085,7 +22673,10 @@ "plasmid_name": "pGMCKq26-10M-hyg", "sequence-type": "depositor-full", "addgene_id": "27337", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "file": "data/addgene_plasmids/27337.depositor-full.gb" }, @@ -18094,7 +22685,10 @@ "plasmid_name": "pHAGE-BRAF-L597Q", "sequence-type": "addgene-full", "addgene_id": "116177", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116177.addgene-full.gb" }, @@ -18103,7 +22697,10 @@ "plasmid_name": "A1-LCD-20G+20S-12F+12Y", "sequence-type": "addgene-full", "addgene_id": "178689", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178689.addgene-full.gb" }, @@ -18112,7 +22709,10 @@ "plasmid_name": "pTol2CG NBT:NRGIIIa_R551Q:polyA", "sequence-type": "addgene-full", "addgene_id": "193013", - "references": [], + "references": [ + "https://doi.org/10.1002/humu.24393", + "https://www.ncbi.nlm.nih.gov/pubmed/35485770" + ], "kit": null, "file": "data/addgene_plasmids/193013.addgene-full.gb" }, @@ -18121,7 +22721,10 @@ "plasmid_name": "p{ie1-eGFP::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182172", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182172.addgene-full.gb" }, @@ -18130,7 +22733,10 @@ "plasmid_name": "pDONR223_CNBD1_WT", "sequence-type": "addgene-full", "addgene_id": "81877", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -18142,7 +22748,9 @@ "plasmid_name": "pMpGWB209", "sequence-type": "depositor-full", "addgene_id": "68600", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68600.depositor-full.gb" }, @@ -18151,7 +22759,10 @@ "plasmid_name": "p7054 pHAGE-P-CMVt-N-HA-GAW-COPE", "sequence-type": "addgene-full", "addgene_id": "100144", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100144.addgene-full.gb" }, @@ -18160,7 +22771,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TTBK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189881", - "references": [], "kit": null, "file": "data/addgene_plasmids/189881.addgene-full.gb" }, @@ -18169,7 +22779,10 @@ "plasmid_name": "pYPQ285-RVR", "sequence-type": "addgene-full", "addgene_id": "138121", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138121.addgene-full.gb" }, @@ -18178,7 +22791,10 @@ "plasmid_name": "pDONR-BLINK2", "sequence-type": "addgene-full", "addgene_id": "117075", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-018-0186-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30377377" + ], "kit": null, "file": "data/addgene_plasmids/117075.addgene-full.gb" }, @@ -18187,7 +22803,10 @@ "plasmid_name": "pDONR223_OR2M2_WT", "sequence-type": "addgene-full", "addgene_id": "81758", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -18199,7 +22818,10 @@ "plasmid_name": "CPH3566 (pDEST15_Spt6 1223-1451)", "sequence-type": "addgene-full", "addgene_id": "91814", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.28723", + "https://www.ncbi.nlm.nih.gov/pubmed/28826505" + ], "kit": null, "file": "data/addgene_plasmids/91814.addgene-full.gb" }, @@ -18208,7 +22830,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-lin-4", "sequence-type": "depositor-full", "addgene_id": "46737", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46737.depositor-full.gb" }, @@ -18217,7 +22842,6 @@ "plasmid_name": "p663-UBC-2xV5-miniTurbo-NES-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158161", - "references": [], "kit": null, "file": "data/addgene_plasmids/158161.addgene-full.gb" }, @@ -18226,7 +22850,10 @@ "plasmid_name": "TFORF3462", "sequence-type": "addgene-full", "addgene_id": "144938", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144938.addgene-full.gb" }, @@ -18235,7 +22862,10 @@ "plasmid_name": "pLX304_zeo_mmFbxw7_R505C", "sequence-type": "addgene-full", "addgene_id": "160104", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160104.addgene-full.gb" }, @@ -18244,7 +22874,10 @@ "plasmid_name": "pDONR221_SLC2A9", "sequence-type": "addgene-full", "addgene_id": "131879", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131879.addgene-full.gb" }, @@ -18253,7 +22886,10 @@ "plasmid_name": "IO601: pMVP (R4-R3) eCFP open", "sequence-type": "addgene-full", "addgene_id": "121735", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121735.addgene-full.gb" }, @@ -18262,7 +22898,10 @@ "plasmid_name": "pAG414GPD-dCas9-VPR", "sequence-type": "depositor-full", "addgene_id": "63801", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3312", + "https://www.ncbi.nlm.nih.gov/pubmed/25730490" + ], "kit": null, "file": "data/addgene_plasmids/63801.depositor-full.gb" }, @@ -18271,7 +22910,10 @@ "plasmid_name": "pDONR223_CBR1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82945", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82945.addgene-full.gb" }, @@ -18280,7 +22922,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP4", "sequence-type": "addgene-full", "addgene_id": "158355", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158355.addgene-full.gb" }, @@ -18289,7 +22934,10 @@ "plasmid_name": "5'-3xFLAG Zmynd8+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212079", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212079.addgene-full.gb" }, @@ -18298,7 +22946,10 @@ "plasmid_name": "pDONR223_HRAS_WT", "sequence-type": "addgene-full", "addgene_id": "81938", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81938.addgene-full.gb" }, @@ -18307,7 +22958,10 @@ "plasmid_name": "GFP-PK1Dexp", "sequence-type": "addgene-full", "addgene_id": "130834", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130834.addgene-full.gb" }, @@ -18316,7 +22970,10 @@ "plasmid_name": "pDONR221-SLC25A47_STOP", "sequence-type": "addgene-full", "addgene_id": "161149", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161149.addgene-full.gb" }, @@ -18325,7 +22982,10 @@ "plasmid_name": "pAG303GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14229", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -18337,7 +22997,10 @@ "plasmid_name": "pDONR223_CCND1_WT", "sequence-type": "addgene-full", "addgene_id": "82891", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82891.addgene-full.gb" }, @@ -18346,7 +23009,10 @@ "plasmid_name": "pLD-puro-Cc-CR-PARK7E163K-VA", "sequence-type": "addgene-full", "addgene_id": "115191", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115191.addgene-full.gb" }, @@ -18355,7 +23021,10 @@ "plasmid_name": "TFORF3282", "sequence-type": "addgene-full", "addgene_id": "144758", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144758.addgene-full.gb" }, @@ -18364,7 +23033,10 @@ "plasmid_name": "pSLIK 3xFLAG-PFN2_variant2 zeo", "sequence-type": "addgene-full", "addgene_id": "192325", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192325.addgene-full.gb" }, @@ -18373,7 +23045,10 @@ "plasmid_name": "TFORF3401", "sequence-type": "addgene-full", "addgene_id": "144877", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144877.addgene-full.gb" }, @@ -18382,7 +23057,9 @@ "plasmid_name": "pLV-EgI-ZeoR", "sequence-type": "addgene-full", "addgene_id": "207178", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207178.addgene-full.gb" }, @@ -18391,7 +23068,10 @@ "plasmid_name": "pcDNA3_SP-GCGR-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194375", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194375.addgene-full.gb" }, @@ -18400,7 +23080,10 @@ "plasmid_name": "pDONR221_SLC17A5", "sequence-type": "addgene-full", "addgene_id": "131936", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131936.addgene-full.gb" }, @@ -18409,7 +23092,10 @@ "plasmid_name": "pEBTetBl-CLIP-CPAP", "sequence-type": "addgene-full", "addgene_id": "136864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136864.addgene-full.gb" }, @@ -18418,7 +23104,6 @@ "plasmid_name": "MAPK9_BirA_Cterm", "sequence-type": "addgene-full", "addgene_id": "221520", - "references": [], "kit": null, "file": "data/addgene_plasmids/221520.addgene-full.gb" }, @@ -18427,7 +23112,10 @@ "plasmid_name": "p35S_EVDwt", "sequence-type": "addgene-full", "addgene_id": "167119", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.220723.117", + "https://www.ncbi.nlm.nih.gov/pubmed/28784835" + ], "kit": null, "file": "data/addgene_plasmids/167119.addgene-full.gb" }, @@ -18436,7 +23124,10 @@ "plasmid_name": "pDONR221-SLC24A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161132", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161132.depositor-full.gb" }, @@ -18445,7 +23136,10 @@ "plasmid_name": "Epac-S-H171", "sequence-type": "addgene-full", "addgene_id": "170353", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0122513", + "https://www.ncbi.nlm.nih.gov/pubmed/25875503" + ], "kit": null, "file": "data/addgene_plasmids/170353.addgene-full.gb" }, @@ -18454,7 +23148,6 @@ "plasmid_name": "pGP6G-ccdB", "sequence-type": "depositor-full", "addgene_id": "83880", - "references": [], "kit": null, "file": "data/addgene_plasmids/83880.depositor-full.gb" }, @@ -18463,7 +23156,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM F405G", "sequence-type": "addgene-full", "addgene_id": "169988", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169988.addgene-full.gb" }, @@ -18472,7 +23168,10 @@ "plasmid_name": "pDONR223_TUBB_p.R359P", "sequence-type": "addgene-full", "addgene_id": "81617", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -18484,7 +23183,10 @@ "plasmid_name": "TLK1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98378", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98378.addgene-full.gb" }, @@ -18493,7 +23195,10 @@ "plasmid_name": "actc1b-lamp1-mKate2", "sequence-type": "addgene-full", "addgene_id": "109507", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109507.addgene-full.gb" }, @@ -18502,7 +23207,10 @@ "plasmid_name": "TFORF2947", "sequence-type": "addgene-full", "addgene_id": "144423", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144423.addgene-full.gb" }, @@ -18511,7 +23219,10 @@ "plasmid_name": "DHX58", "sequence-type": "addgene-full", "addgene_id": "155542", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155542.addgene-full.gb" }, @@ -18520,7 +23231,9 @@ "plasmid_name": "dnCEBP: pLenti-TRE-A-C/EBP-PGK-rtTAA-2A-Puro", "sequence-type": "addgene-full", "addgene_id": "177201", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.05.17.492374" + ], "kit": null, "file": "data/addgene_plasmids/177201.addgene-full.gb" }, @@ -18529,7 +23242,10 @@ "plasmid_name": "nNc-ABE", "sequence-type": "addgene-full", "addgene_id": "194095", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-022-04258-z", + "https://www.ncbi.nlm.nih.gov/pubmed/36435853" + ], "kit": null, "file": "data/addgene_plasmids/194095.addgene-full.gb" }, @@ -18538,7 +23254,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS4", "sequence-type": "depositor-full", "addgene_id": "20243", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20243.depositor-full.gb" }, @@ -18547,7 +23266,10 @@ "plasmid_name": "pJH199_pE12_hyCal2-mCherry", "sequence-type": "addgene-full", "addgene_id": "160412", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160412.addgene-full.gb" }, @@ -18556,7 +23278,10 @@ "plasmid_name": "PE_09: Prhl_tet_bD", "sequence-type": "addgene-full", "addgene_id": "113598", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113598.addgene-full.gb" }, @@ -18565,7 +23290,6 @@ "plasmid_name": "pLEX307-TMPRSS11D-G418", "sequence-type": "addgene-full", "addgene_id": "158477", - "references": [], "kit": null, "file": "data/addgene_plasmids/158477.addgene-full.gb" }, @@ -18574,7 +23298,10 @@ "plasmid_name": "pDONR221_SLC27A6", "sequence-type": "addgene-full", "addgene_id": "132092", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132092.addgene-full.gb" }, @@ -18583,7 +23310,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-Swa1::HA-RfA", "sequence-type": "addgene-full", "addgene_id": "186404", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186404.addgene-full.gb" }, @@ -18592,7 +23322,10 @@ "plasmid_name": "FLS2-YFPn", "sequence-type": "addgene-full", "addgene_id": "87165", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.111.192575", + "https://www.ncbi.nlm.nih.gov/pubmed/22535420" + ], "kit": null, "file": "data/addgene_plasmids/87165.addgene-full.gb" }, @@ -18601,7 +23334,10 @@ "plasmid_name": "pENTR-GFP-WT1 +KTS N terminal HA", "sequence-type": "addgene-full", "addgene_id": "217639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "file": "data/addgene_plasmids/217639.addgene-full.gb" }, @@ -18610,7 +23346,10 @@ "plasmid_name": "p414GPD-3xFLAG-RBM28 WT", "sequence-type": "addgene-full", "addgene_id": "169265", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2017777118", + "https://www.ncbi.nlm.nih.gov/pubmed/33941690" + ], "kit": null, "file": "data/addgene_plasmids/169265.addgene-full.gb" }, @@ -18619,7 +23358,6 @@ "plasmid_name": "Hs.KRAS4b G12D", "sequence-type": "depositor-full", "addgene_id": "83131", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -18631,7 +23369,6 @@ "plasmid_name": "pENTR-R2L3-IRESpacDeltaTKpA", "sequence-type": "addgene-full", "addgene_id": "139535", - "references": [], "kit": null, "file": "data/addgene_plasmids/139535.addgene-full.gb" }, @@ -18640,7 +23377,10 @@ "plasmid_name": "pHAGE-PIK3CA-D350G", "sequence-type": "addgene-full", "addgene_id": "116461", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116461.addgene-full.gb" }, @@ -18649,7 +23389,6 @@ "plasmid_name": "pDEST-Opa1", "sequence-type": "addgene-full", "addgene_id": "191961", - "references": [], "kit": null, "file": "data/addgene_plasmids/191961.addgene-full.gb" }, @@ -18658,7 +23397,10 @@ "plasmid_name": "pHAGE-TEX264-GFP", "sequence-type": "addgene-full", "addgene_id": "201925", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "file": "data/addgene_plasmids/201925.addgene-full.gb" }, @@ -18667,7 +23409,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) MXRA7", "sequence-type": "addgene-full", "addgene_id": "107500", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107500.addgene-full.gb" }, @@ -18676,7 +23421,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP9", "sequence-type": "addgene-full", "addgene_id": "141263", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141263.addgene-full.gb" }, @@ -18685,7 +23433,10 @@ "plasmid_name": "pDONR221 NLRP1 A59P", "sequence-type": "addgene-full", "addgene_id": "166816", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166816.addgene-full.gb" }, @@ -18694,7 +23445,10 @@ "plasmid_name": "pAS2-1-Mrt4", "sequence-type": "addgene-full", "addgene_id": "99997", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99997.addgene-full.gb" }, @@ -18703,7 +23457,10 @@ "plasmid_name": "R701-X72-527: His6-tev-Hs.CALM1(76-148)", "sequence-type": "addgene-full", "addgene_id": "159695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bpj.2019.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30846362" + ], "kit": null, "file": "data/addgene_plasmids/159695.addgene-full.gb" }, @@ -18712,7 +23469,10 @@ "plasmid_name": "pDONR221-SLC23A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161203", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161203.depositor-full.gb" }, @@ -18721,7 +23481,10 @@ "plasmid_name": "hsp70:Arl13b-mKate2", "sequence-type": "addgene-full", "addgene_id": "105964", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105964.addgene-full.gb" }, @@ -18730,7 +23493,6 @@ "plasmid_name": "R777-E172 Hs.PIK3R1-nostop", "sequence-type": "depositor-full", "addgene_id": "70456", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -18742,7 +23504,10 @@ "plasmid_name": "pMuLE ENTR H1 L1-R5", "sequence-type": "depositor-full", "addgene_id": "62101", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62101.depositor-full.gb" }, @@ -18751,7 +23516,10 @@ "plasmid_name": "R702-X80-635: His6-tev-Hs.NF1opt (1-2818) isoform 2", "sequence-type": "addgene-full", "addgene_id": "159575", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA119.010934", + "https://www.ncbi.nlm.nih.gov/pubmed/31836666" + ], "kit": null, "file": "data/addgene_plasmids/159575.addgene-full.gb" }, @@ -18760,7 +23528,10 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ashL344A-mCerulean", "sequence-type": "depositor-full", "addgene_id": "69580", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1311126110", + "https://www.ncbi.nlm.nih.gov/pubmed/24006363" + ], "kit": null, "file": "data/addgene_plasmids/69580.depositor-full.gb" }, @@ -18769,7 +23540,10 @@ "plasmid_name": "pHAGE-QKI__PACRG", "sequence-type": "addgene-full", "addgene_id": "116835", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116835.addgene-full.gb" }, @@ -18778,7 +23552,10 @@ "plasmid_name": "pHAGE-PTH2", "sequence-type": "addgene-full", "addgene_id": "116781", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116781.addgene-full.gb" }, @@ -18787,7 +23564,10 @@ "plasmid_name": "pDONR221_SLC18A3", "sequence-type": "addgene-full", "addgene_id": "132009", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132009.addgene-full.gb" }, @@ -18796,7 +23576,6 @@ "plasmid_name": "pDest-557", "sequence-type": "addgene-full", "addgene_id": "161890", - "references": [], "kit": null, "file": "data/addgene_plasmids/161890.addgene-full.gb" }, @@ -18805,7 +23584,10 @@ "plasmid_name": "pDONR223_NANOG_WT", "sequence-type": "addgene-full", "addgene_id": "82148", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82148.addgene-full.gb" }, @@ -18814,7 +23596,10 @@ "plasmid_name": "pDONR223_DNAJC12_p.R178C", "sequence-type": "addgene-full", "addgene_id": "81301", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -18826,7 +23611,6 @@ "plasmid_name": "pAG416GALL-SARS-CoV_3CL", "sequence-type": "addgene-full", "addgene_id": "203495", - "references": [], "kit": null, "file": "data/addgene_plasmids/203495.addgene-full.gb" }, @@ -18835,7 +23619,10 @@ "plasmid_name": "pEntr-SRFflbio", "sequence-type": "depositor-full", "addgene_id": "32971", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1016959108", + "https://www.ncbi.nlm.nih.gov/pubmed/21415370" + ], "kit": null, "file": "data/addgene_plasmids/32971.depositor-full.gb" }, @@ -18844,7 +23631,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L1R5", "sequence-type": "addgene-full", "addgene_id": "113737", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -18856,7 +23646,10 @@ "plasmid_name": "pENTR4 Ta-sro1 WWE-PARP", "sequence-type": "addgene-full", "addgene_id": "192548", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koac261", + "https://www.ncbi.nlm.nih.gov/pubmed/35980152" + ], "kit": null, "file": "data/addgene_plasmids/192548.addgene-full.gb" }, @@ -18865,7 +23658,10 @@ "plasmid_name": "pPB-DEST-R1R2-pNeo", "sequence-type": "addgene-full", "addgene_id": "141057", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141057.addgene-full.gb" }, @@ -18874,7 +23670,10 @@ "plasmid_name": "pHAGE-RAF1-L86R", "sequence-type": "addgene-full", "addgene_id": "116655", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116655.addgene-full.gb" }, @@ -18883,7 +23682,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (R39H)", "sequence-type": "addgene-full", "addgene_id": "119309", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119309.addgene-full.gb" }, @@ -18892,7 +23694,10 @@ "plasmid_name": "pCFJ906", "sequence-type": "depositor-full", "addgene_id": "44472", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44472.depositor-full.gb" }, @@ -18901,7 +23706,10 @@ "plasmid_name": "pKM1000", "sequence-type": "depositor-full", "addgene_id": "8840", - "references": [], + "references": [ + "https://doi.org/10.1016/S0014-5793%2803%2900070-X", + "https://www.ncbi.nlm.nih.gov/pubmed/12606030" + ], "kit": null, "file": "data/addgene_plasmids/8840.depositor-full.gb" }, @@ -18910,7 +23718,10 @@ "plasmid_name": "C511-E15: attB5r-ffluc2-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162939", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -18922,7 +23733,10 @@ "plasmid_name": "Flag-HA-EIF3S5", "sequence-type": "addgene-full", "addgene_id": "22546", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22546.addgene-full.gb" }, @@ -18931,7 +23745,10 @@ "plasmid_name": "pDONR223_SOX2_WT", "sequence-type": "addgene-full", "addgene_id": "82233", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82233.addgene-full.gb" }, @@ -18940,7 +23757,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0502-luc2", "sequence-type": "addgene-full", "addgene_id": "214644", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214644.addgene-full.gb" }, @@ -18949,7 +23769,10 @@ "plasmid_name": "pCarCBADE", "sequence-type": "addgene-full", "addgene_id": "117757", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0084-6", + "https://www.ncbi.nlm.nih.gov/pubmed/29942079" + ], "kit": null, "file": "data/addgene_plasmids/117757.addgene-full.gb" }, @@ -18958,7 +23781,10 @@ "plasmid_name": "pDONR201-Eps8L2_181-299", "sequence-type": "addgene-full", "addgene_id": "196528", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196528.addgene-full.gb" }, @@ -18967,7 +23793,6 @@ "plasmid_name": "R777-E098 Hs.FOS-nostop", "sequence-type": "depositor-full", "addgene_id": "70382", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -18979,7 +23804,9 @@ "plasmid_name": "pDRFLIP34", "sequence-type": "depositor-full", "addgene_id": "65512", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65512.depositor-full.gb" }, @@ -18988,7 +23815,10 @@ "plasmid_name": "pSGE_871_Nhe2_EcR-to-ato", "sequence-type": "depositor-full", "addgene_id": "71180", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71180.depositor-full.gb" }, @@ -18997,7 +23827,10 @@ "plasmid_name": "pLenti-PGK-RAP1A-WT-puro", "sequence-type": "addgene-full", "addgene_id": "156166", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156166.addgene-full.gb" }, @@ -19006,7 +23839,10 @@ "plasmid_name": "373 pTol2-fli1ep:CherryDest", "sequence-type": "depositor-full", "addgene_id": "73493", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/73493.depositor-full.gb" }, @@ -19015,7 +23851,10 @@ "plasmid_name": "pDONR221_SLC35C2", "sequence-type": "addgene-full", "addgene_id": "132146", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132146.addgene-full.gb" }, @@ -19024,7 +23863,10 @@ "plasmid_name": "pWS1078", "sequence-type": "addgene-full", "addgene_id": "123027", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123027.addgene-full.gb" }, @@ -19033,7 +23875,10 @@ "plasmid_name": "pLVX-EGFP-IRES-Neo", "sequence-type": "addgene-full", "addgene_id": "128660", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128660.addgene-full.gb" }, @@ -19042,7 +23887,6 @@ "plasmid_name": "MECP2 - R133C in pENTR", "sequence-type": "addgene-full", "addgene_id": "216594", - "references": [], "kit": null, "file": "data/addgene_plasmids/216594.addgene-full.gb" }, @@ -19051,7 +23895,10 @@ "plasmid_name": "pLX302 OASL-V5 puro", "sequence-type": "addgene-full", "addgene_id": "158643", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158643.addgene-full.gb" }, @@ -19060,7 +23907,10 @@ "plasmid_name": "pTol2_(-3kb)nrg1_typeII:GFP-CAAX", "sequence-type": "addgene-full", "addgene_id": "199394", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "file": "data/addgene_plasmids/199394.addgene-full.gb" }, @@ -19069,7 +23919,6 @@ "plasmid_name": "pDD400", "sequence-type": "addgene-full", "addgene_id": "137024", - "references": [], "kit": null, "file": "data/addgene_plasmids/137024.addgene-full.gb" }, @@ -19078,7 +23927,6 @@ "plasmid_name": "R777-E134 Hs.MLST8-nostop", "sequence-type": "depositor-full", "addgene_id": "70418", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -19090,7 +23938,10 @@ "plasmid_name": "pAAVS1-P-CAG-GFPluc2", "sequence-type": "depositor-full", "addgene_id": "80493", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "file": "data/addgene_plasmids/80493.depositor-full.gb" }, @@ -19099,7 +23950,10 @@ "plasmid_name": "MAC_N_KLF9", "sequence-type": "addgene-full", "addgene_id": "167774", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167774.addgene-full.gb" }, @@ -19108,7 +23962,6 @@ "plasmid_name": "pDEST-GST-hSYK", "sequence-type": "addgene-full", "addgene_id": "211892", - "references": [], "kit": null, "file": "data/addgene_plasmids/211892.addgene-full.gb" }, @@ -19117,7 +23970,10 @@ "plasmid_name": "p414GPD-3xFLAG-GW", "sequence-type": "depositor-full", "addgene_id": "63780", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63780.depositor-full.gb" }, @@ -19126,7 +23982,10 @@ "plasmid_name": "pHAGE-DAPK1", "sequence-type": "addgene-full", "addgene_id": "116727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116727.addgene-full.gb" }, @@ -19135,7 +23994,10 @@ "plasmid_name": "pJAK2.B", "sequence-type": "depositor-full", "addgene_id": "29463", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2009.07.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19647016" + ], "kit": null, "file": "data/addgene_plasmids/29463.depositor-full.gb" }, @@ -19144,7 +24006,9 @@ "plasmid_name": "p3E-CMVmin:GFPmem pA", "sequence-type": "depositor-full", "addgene_id": "80823", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80823.depositor-full.gb" }, @@ -19153,7 +24017,10 @@ "plasmid_name": "MAC_C_SCO1", "sequence-type": "addgene-full", "addgene_id": "111675", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111675.addgene-full.gb" }, @@ -19162,7 +24029,10 @@ "plasmid_name": "p35S-KO1", "sequence-type": "addgene-full", "addgene_id": "182722", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182722.addgene-full.gb" }, @@ -19171,7 +24041,6 @@ "plasmid_name": "IDG_CATSPER2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161656", - "references": [], "kit": null, "file": "data/addgene_plasmids/161656.addgene-full.gb" }, @@ -19180,7 +24049,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-MYEF2", "sequence-type": "addgene-full", "addgene_id": "38069", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38069.addgene-full.gb" }, @@ -19189,7 +24061,10 @@ "plasmid_name": "pLV-hPLXNB2_PGK_Neo", "sequence-type": "addgene-full", "addgene_id": "176848", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/176848.addgene-full.gb" }, @@ -19198,7 +24073,10 @@ "plasmid_name": "pDONR223_RAB42_p.A61T", "sequence-type": "addgene-full", "addgene_id": "81273", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -19210,7 +24088,10 @@ "plasmid_name": "pMx/ATP11C-c-HA", "sequence-type": "addgene-full", "addgene_id": "209239", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258523", + "https://www.ncbi.nlm.nih.gov/pubmed/34528675" + ], "kit": null, "file": "data/addgene_plasmids/209239.addgene-full.gb" }, @@ -19219,7 +24100,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag4_nostop", "sequence-type": "addgene-full", "addgene_id": "153176", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153176.addgene-full.gb" }, @@ -19228,7 +24112,10 @@ "plasmid_name": "pHAGE DN Cullin2", "sequence-type": "addgene-full", "addgene_id": "41912", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2011.09.019", + "https://www.ncbi.nlm.nih.gov/pubmed/21963094" + ], "kit": null, "file": "data/addgene_plasmids/41912.addgene-full.gb" }, @@ -19237,7 +24124,10 @@ "plasmid_name": "ath5:GFP-DCX", "sequence-type": "addgene-full", "addgene_id": "105959", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105959.addgene-full.gb" }, @@ -19246,7 +24136,10 @@ "plasmid_name": "PLX_307 GFP", "sequence-type": "addgene-full", "addgene_id": "184492", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abf0529", + "https://www.ncbi.nlm.nih.gov/pubmed/35298263" + ], "kit": null, "file": "data/addgene_plasmids/184492.addgene-full.gb" }, @@ -19255,7 +24148,6 @@ "plasmid_name": "pEF 4r-YFP-3r", "sequence-type": "depositor-full", "addgene_id": "20096", - "references": [], "kit": null, "file": "data/addgene_plasmids/20096.depositor-full.gb" }, @@ -19264,7 +24156,10 @@ "plasmid_name": "R989-X28-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12D", "sequence-type": "addgene-full", "addgene_id": "159548", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159548.addgene-full.gb" }, @@ -19273,7 +24168,9 @@ "plasmid_name": "pMpGWB401", "sequence-type": "depositor-full", "addgene_id": "68666", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68666.depositor-full.gb" }, @@ -19282,7 +24179,10 @@ "plasmid_name": "pCPP5306", "sequence-type": "addgene-full", "addgene_id": "128712", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128712.addgene-full.gb" }, @@ -19291,7 +24191,10 @@ "plasmid_name": "pAG425GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14201", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -19303,7 +24206,10 @@ "plasmid_name": "pDONR221_SLC22A1", "sequence-type": "addgene-full", "addgene_id": "132034", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms23031203", + "https://www.ncbi.nlm.nih.gov/pubmed/35163125" + ], "kit": null, "file": "data/addgene_plasmids/132034.addgene-full.gb" }, @@ -19312,7 +24218,10 @@ "plasmid_name": "pENTR-actin-R62D", "sequence-type": "addgene-full", "addgene_id": "118379", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118379.addgene-full.gb" }, @@ -19321,7 +24230,10 @@ "plasmid_name": "SKIV2L", "sequence-type": "addgene-full", "addgene_id": "156014", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156014.addgene-full.gb" }, @@ -19330,7 +24242,10 @@ "plasmid_name": "pHAGE-ATP2B4__OPTC", "sequence-type": "addgene-full", "addgene_id": "116808", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116808.addgene-full.gb" }, @@ -19339,7 +24254,6 @@ "plasmid_name": "pDONR221-dyrk1aa", "sequence-type": "addgene-full", "addgene_id": "192741", - "references": [], "kit": null, "file": "data/addgene_plasmids/192741.addgene-full.gb" }, @@ -19348,7 +24262,10 @@ "plasmid_name": "pCLX-CHOP-dGFP", "sequence-type": "depositor-full", "addgene_id": "71299", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.01.061", + "https://www.ncbi.nlm.nih.gov/pubmed/25732825" + ], "kit": null, "file": "data/addgene_plasmids/71299.depositor-full.gb" }, @@ -19357,7 +24274,10 @@ "plasmid_name": "pDONR223_CDK4_p.R24C", "sequence-type": "addgene-full", "addgene_id": "82175", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82175.addgene-full.gb" }, @@ -19366,7 +24286,10 @@ "plasmid_name": "pKLV2-U6gRNASAM(gTetO)-TREGFP-PGKpuroBFP-W", "sequence-type": "addgene-full", "addgene_id": "112927", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-018-1581-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30477585" + ], "kit": null, "file": "data/addgene_plasmids/112927.addgene-full.gb" }, @@ -19375,7 +24298,10 @@ "plasmid_name": "pCOBL-GW", "sequence-type": "addgene-full", "addgene_id": "209376", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209376.addgene-full.gb" }, @@ -19384,7 +24310,10 @@ "plasmid_name": "pDONR221_SLCO1B3", "sequence-type": "addgene-full", "addgene_id": "132200", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132200.addgene-full.gb" }, @@ -19393,7 +24322,10 @@ "plasmid_name": "pHAGE-PIK3R1-E451delE", "sequence-type": "addgene-full", "addgene_id": "116588", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116588.addgene-full.gb" }, @@ -19402,7 +24334,10 @@ "plasmid_name": "plIVMD156", "sequence-type": "addgene-full", "addgene_id": "160934", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2002650117", + "https://www.ncbi.nlm.nih.gov/pubmed/33037152" + ], "kit": null, "file": "data/addgene_plasmids/160934.addgene-full.gb" }, @@ -19411,7 +24346,10 @@ "plasmid_name": "pDONR223 GABARAP G116A", "sequence-type": "addgene-full", "addgene_id": "123081", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123081.addgene-full.gb" }, @@ -19420,7 +24358,10 @@ "plasmid_name": "pPB-cT3G-cERP2-LHX9", "sequence-type": "addgene-full", "addgene_id": "192921", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192921.addgene-full.gb" }, @@ -19429,7 +24370,10 @@ "plasmid_name": "pHAGE-RET-G751E", "sequence-type": "addgene-full", "addgene_id": "116668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116668.addgene-full.gb" }, @@ -19438,7 +24382,10 @@ "plasmid_name": "pDONR223-NPR2", "sequence-type": "addgene-full", "addgene_id": "23479", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -19450,7 +24397,10 @@ "plasmid_name": "C232-E08: attB2r-mTFP1-attB3", "sequence-type": "addgene-full", "addgene_id": "162904", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -19462,7 +24412,10 @@ "plasmid_name": "pDESTmycYBX1", "sequence-type": "addgene-full", "addgene_id": "19878", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19878.addgene-full.gb" }, @@ -19471,7 +24424,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PIP4K2C_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170598", - "references": [], "kit": null, "file": "data/addgene_plasmids/170598.addgene-full.gb" }, @@ -19480,7 +24432,10 @@ "plasmid_name": "pMEdusp5P1gfp", "sequence-type": "addgene-full", "addgene_id": "90126", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90126.addgene-full.gb" }, @@ -19489,7 +24444,10 @@ "plasmid_name": "pLenti CMV Neo DEST (705-1)", "sequence-type": "addgene-full", "addgene_id": "17392", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17392.addgene-full.gb" }, @@ -19498,7 +24456,6 @@ "plasmid_name": "His8:MBP-tev-Leu-e\u0394K-Flv", "sequence-type": "addgene-full", "addgene_id": "83397", - "references": [], "kit": null, "file": "data/addgene_plasmids/83397.addgene-full.gb" }, @@ -19507,7 +24464,10 @@ "plasmid_name": "GFP-BRDT", "sequence-type": "addgene-full", "addgene_id": "65381", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65381.addgene-full.gb" }, @@ -19516,7 +24476,10 @@ "plasmid_name": "pME-PLIN2-tdTOMATO", "sequence-type": "addgene-full", "addgene_id": "172533", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64744", + "https://www.ncbi.nlm.nih.gov/pubmed/34114952" + ], "kit": null, "file": "data/addgene_plasmids/172533.addgene-full.gb" }, @@ -19525,7 +24488,9 @@ "plasmid_name": "pMpGWB300", "sequence-type": "depositor-full", "addgene_id": "68628", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68628.depositor-full.gb" }, @@ -19534,7 +24499,10 @@ "plasmid_name": "pRATIO3212", "sequence-type": "addgene-full", "addgene_id": "141311", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141311.addgene-full.gb" }, @@ -19543,7 +24511,10 @@ "plasmid_name": "pRSET-Cm-CspB", "sequence-type": "addgene-full", "addgene_id": "215400", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2319499121", + "https://www.ncbi.nlm.nih.gov/pubmed/38814867" + ], "kit": null, "file": "data/addgene_plasmids/215400.addgene-full.gb" }, @@ -19552,7 +24523,10 @@ "plasmid_name": "pHAGE-PIK3CA-M1V", "sequence-type": "addgene-full", "addgene_id": "116513", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116513.addgene-full.gb" }, @@ -19561,7 +24535,10 @@ "plasmid_name": "pCFJ2092 - [1-2] ENTR - Fluor - mNeon(PATC)", "sequence-type": "addgene-full", "addgene_id": "159853", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159853.addgene-full.gb" }, @@ -19570,7 +24547,10 @@ "plasmid_name": "MAC_C_ERBB3", "sequence-type": "addgene-full", "addgene_id": "187794", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187794.addgene-full.gb" }, @@ -19579,7 +24559,10 @@ "plasmid_name": "pDONR223_STK11_p.D176H", "sequence-type": "addgene-full", "addgene_id": "82870", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82870.addgene-full.gb" }, @@ -19588,7 +24571,10 @@ "plasmid_name": "MiniCoopR mitfa:KIT L576P", "sequence-type": "addgene-full", "addgene_id": "118848", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118848.addgene-full.gb" }, @@ -19597,7 +24583,10 @@ "plasmid_name": "pHAGE-ERBB2-L755_T759delLRENT", "sequence-type": "addgene-full", "addgene_id": "116339", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116339.addgene-full.gb" }, @@ -19606,7 +24595,10 @@ "plasmid_name": "pDONR221-MFSD9_STOP", "sequence-type": "depositor-full", "addgene_id": "161060", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161060.depositor-full.gb" }, @@ -19615,7 +24607,9 @@ "plasmid_name": "p3e UbB polyA", "sequence-type": "addgene-full", "addgene_id": "188702", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "file": "data/addgene_plasmids/188702.addgene-full.gb" }, @@ -19624,7 +24618,6 @@ "plasmid_name": "R777-E351 Hs.TP53", "sequence-type": "depositor-full", "addgene_id": "70635", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -19636,7 +24629,10 @@ "plasmid_name": "TFORF2983", "sequence-type": "addgene-full", "addgene_id": "144459", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144459.addgene-full.gb" }, @@ -19645,7 +24641,10 @@ "plasmid_name": "DHX35", "sequence-type": "addgene-full", "addgene_id": "155538", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155538.addgene-full.gb" }, @@ -19654,7 +24653,10 @@ "plasmid_name": "pAG305GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14186", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -19666,7 +24668,10 @@ "plasmid_name": "pDONR221-SLC38A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161248", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161248.addgene-full.gb" }, @@ -19675,7 +24680,10 @@ "plasmid_name": "SIN-cPPT-H1-sgHtt1-7SK-sgCas9-PGK-mCherry-WPRE", "sequence-type": "addgene-full", "addgene_id": "87912", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87912.addgene-full.gb" }, @@ -19684,7 +24692,6 @@ "plasmid_name": "pCLX-Ngn3-GFP", "sequence-type": "addgene-full", "addgene_id": "114309", - "references": [], "kit": null, "file": "data/addgene_plasmids/114309.addgene-full.gb" }, @@ -19693,7 +24700,6 @@ "plasmid_name": "R777-E068 Hs.EXOC1-nostop", "sequence-type": "depositor-full", "addgene_id": "70352", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -19705,7 +24711,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND L368G", "sequence-type": "addgene-full", "addgene_id": "169969", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169969.addgene-full.gb" }, @@ -19714,7 +24723,6 @@ "plasmid_name": "pCW57.1_V5_FLAG_Nt", "sequence-type": "addgene-full", "addgene_id": "194074", - "references": [], "kit": null, "file": "data/addgene_plasmids/194074.addgene-full.gb" }, @@ -19723,7 +24731,10 @@ "plasmid_name": "pDONR223-ZNF511", "sequence-type": "addgene-full", "addgene_id": "88081", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88081.addgene-full.gb" }, @@ -19732,7 +24743,10 @@ "plasmid_name": "pGWB521", "sequence-type": "depositor-full", "addgene_id": "74863", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74863.depositor-full.gb" }, @@ -19741,7 +24755,10 @@ "plasmid_name": "TFORF3420", "sequence-type": "addgene-full", "addgene_id": "144896", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144896.addgene-full.gb" }, @@ -19750,7 +24767,10 @@ "plasmid_name": "actc1b-mKate2-rab1ab", "sequence-type": "addgene-full", "addgene_id": "109606", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109606.addgene-full.gb" }, @@ -19759,7 +24779,10 @@ "plasmid_name": "TFORF3246", "sequence-type": "addgene-full", "addgene_id": "144722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144722.addgene-full.gb" }, @@ -19768,7 +24791,10 @@ "plasmid_name": "pDONR223 ATG3 allKR", "sequence-type": "addgene-full", "addgene_id": "129295", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129295.addgene-full.gb" }, @@ -19777,7 +24803,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_delta3291-3298", "sequence-type": "addgene-full", "addgene_id": "187125", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187125.addgene-full.gb" }, @@ -19786,7 +24815,10 @@ "plasmid_name": "pDONR223_FBXW7_p.R689Q", "sequence-type": "addgene-full", "addgene_id": "81516", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -19798,7 +24830,10 @@ "plasmid_name": "476 p5E-mcs", "sequence-type": "depositor-full", "addgene_id": "26029", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/26029.depositor-full.gb" }, @@ -19807,7 +24842,10 @@ "plasmid_name": "pDONR221-SLC25A15_STOP", "sequence-type": "addgene-full", "addgene_id": "161133", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161133.addgene-full.gb" }, @@ -19816,7 +24854,10 @@ "plasmid_name": "CPSF4", "sequence-type": "addgene-full", "addgene_id": "155477", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155477.addgene-full.gb" }, @@ -19825,7 +24866,6 @@ "plasmid_name": "pPB-CAG-Venus-Akaluc", "sequence-type": "addgene-full", "addgene_id": "209768", - "references": [], "kit": null, "file": "data/addgene_plasmids/209768.addgene-full.gb" }, @@ -19834,7 +24874,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP5_nostop", "sequence-type": "addgene-full", "addgene_id": "168690", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168690.addgene-full.gb" }, @@ -19843,7 +24886,10 @@ "plasmid_name": "Non-specific sgRNA", "sequence-type": "addgene-full", "addgene_id": "109432", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky332", + "https://www.ncbi.nlm.nih.gov/pubmed/29746667" + ], "kit": null, "file": "data/addgene_plasmids/109432.addgene-full.gb" }, @@ -19852,7 +24898,10 @@ "plasmid_name": "TFORF3040", "sequence-type": "addgene-full", "addgene_id": "144516", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144516.addgene-full.gb" }, @@ -19861,7 +24910,10 @@ "plasmid_name": "pEntry_HCoV-NL63-Envelope", "sequence-type": "addgene-full", "addgene_id": "168924", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168924.addgene-full.gb" }, @@ -19870,7 +24922,10 @@ "plasmid_name": "pHAGE-BRAF-S637*", "sequence-type": "addgene-full", "addgene_id": "116196", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116196.addgene-full.gb" }, @@ -19879,7 +24934,10 @@ "plasmid_name": "pDEST-periHisMBP", "sequence-type": "depositor-full", "addgene_id": "11086", - "references": [], + "references": [ + "https://doi.org/10.1110/ps.051718605", + "https://www.ncbi.nlm.nih.gov/pubmed/16322578" + ], "kit": null, "file": "data/addgene_plasmids/11086.depositor-full.gb" }, @@ -19888,7 +24946,10 @@ "plasmid_name": "pDONR223_C15orf23_WT", "sequence-type": "addgene-full", "addgene_id": "81896", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -19900,7 +24961,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-mir-34", "sequence-type": "depositor-full", "addgene_id": "46665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46665.depositor-full.gb" }, @@ -19909,7 +24973,10 @@ "plasmid_name": "pDONR221-SLC39A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161307", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161307.addgene-full.gb" }, @@ -19918,7 +24985,10 @@ "plasmid_name": "A1-LCD-2K", "sequence-type": "addgene-full", "addgene_id": "178668", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178668.addgene-full.gb" }, @@ -19927,7 +24997,10 @@ "plasmid_name": "pDONR223_ERBB2_p.V842I", "sequence-type": "addgene-full", "addgene_id": "81722", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -19939,7 +25012,10 @@ "plasmid_name": "pDONR221-Basigin", "sequence-type": "addgene-full", "addgene_id": "221415", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221415.addgene-full.gb" }, @@ -19948,7 +25024,10 @@ "plasmid_name": "pH7m34GW_RcCHAD-mCherry", "sequence-type": "addgene-full", "addgene_id": "127784", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.201900385", + "https://www.ncbi.nlm.nih.gov/pubmed/31133615" + ], "kit": null, "file": "data/addgene_plasmids/127784.addgene-full.gb" }, @@ -19957,7 +25036,10 @@ "plasmid_name": "pHAGE-EGFR-L858R", "sequence-type": "addgene-full", "addgene_id": "116276", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116276.addgene-full.gb" }, @@ -19966,7 +25048,10 @@ "plasmid_name": "TFORF3466", "sequence-type": "addgene-full", "addgene_id": "144942", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144942.addgene-full.gb" }, @@ -19975,7 +25060,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 NSP1_nostop", "sequence-type": "addgene-full", "addgene_id": "168570", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168570.addgene-full.gb" }, @@ -19984,7 +25072,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK18_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158180", - "references": [], "kit": null, "file": "data/addgene_plasmids/158180.addgene-full.gb" }, @@ -19993,7 +25080,10 @@ "plasmid_name": "pDONR223_BFP", "sequence-type": "depositor-full", "addgene_id": "25891", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "file": "data/addgene_plasmids/25891.depositor-full.gb" }, @@ -20002,7 +25092,10 @@ "plasmid_name": "TFORF3524", "sequence-type": "depositor-full", "addgene_id": "145000", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145000.depositor-full.gb" }, @@ -20011,7 +25104,10 @@ "plasmid_name": "pDONR221_SLC15A3", "sequence-type": "addgene-full", "addgene_id": "131898", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131898.addgene-full.gb" }, @@ -20020,7 +25116,10 @@ "plasmid_name": "SITS-EGFP-ccdb", "sequence-type": "addgene-full", "addgene_id": "118628", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/118628.addgene-full.gb" }, @@ -20029,7 +25128,10 @@ "plasmid_name": "pDONR223_AKT1_p.E17K", "sequence-type": "addgene-full", "addgene_id": "81459", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -20041,7 +25143,10 @@ "plasmid_name": "JN607: pMVP/SB-DEST", "sequence-type": "addgene-full", "addgene_id": "121860", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121860.addgene-full.gb" }, @@ -20050,7 +25155,10 @@ "plasmid_name": "pGC155", "sequence-type": "depositor-full", "addgene_id": "19671", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19671.depositor-full.gb" }, @@ -20059,7 +25167,10 @@ "plasmid_name": "pLX302-DUSP19-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87772", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "file": "data/addgene_plasmids/87772.addgene-full.gb" }, @@ -20068,7 +25179,6 @@ "plasmid_name": "R777-E202 Hs.PRKAG2-nostop", "sequence-type": "depositor-full", "addgene_id": "70486", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -20080,7 +25190,10 @@ "plasmid_name": "MS2_GFP", "sequence-type": "addgene-full", "addgene_id": "61764", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.03939", + "https://www.ncbi.nlm.nih.gov/pubmed/25271374" + ], "kit": null, "file": "data/addgene_plasmids/61764.addgene-full.gb" }, @@ -20089,7 +25202,10 @@ "plasmid_name": "pLew90\u03b2-GW/T7/PARP SAS/luciferase/Aldolase 3\u2032UTR", "sequence-type": "depositor-full", "addgene_id": "48157", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pntd.0000740", + "https://www.ncbi.nlm.nih.gov/pubmed/20644616" + ], "kit": null, "file": "data/addgene_plasmids/48157.depositor-full.gb" }, @@ -20098,7 +25214,10 @@ "plasmid_name": "pAG414GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14335", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -20110,7 +25229,10 @@ "plasmid_name": "Cavin4b in pBluescript(SK+)", "sequence-type": "addgene-full", "addgene_id": "126566", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201905065", + "https://www.ncbi.nlm.nih.gov/pubmed/34633413" + ], "kit": null, "file": "data/addgene_plasmids/126566.addgene-full.gb" }, @@ -20119,7 +25241,6 @@ "plasmid_name": "pSCM167-Venus-VF-hSFRP1(aa53-169)", "sequence-type": "addgene-full", "addgene_id": "189546", - "references": [], "kit": null, "file": "data/addgene_plasmids/189546.addgene-full.gb" }, @@ -20128,7 +25249,10 @@ "plasmid_name": "pDONR221-SLC25A36_STOP", "sequence-type": "addgene-full", "addgene_id": "161195", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161195.addgene-full.gb" }, @@ -20137,7 +25261,9 @@ "plasmid_name": "pUB-sSypHer (RbcS-SypHer)", "sequence-type": "addgene-full", "addgene_id": "84732", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "file": "data/addgene_plasmids/84732.addgene-full.gb" }, @@ -20146,7 +25272,10 @@ "plasmid_name": "pEBTetD-SNAP-FOP", "sequence-type": "addgene-full", "addgene_id": "136797", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136797.addgene-full.gb" }, @@ -20155,7 +25284,10 @@ "plasmid_name": "pEBTet-SNAP-Cep128", "sequence-type": "addgene-full", "addgene_id": "136823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136823.addgene-full.gb" }, @@ -20164,7 +25296,10 @@ "plasmid_name": "pENTR pA L3-L2", "sequence-type": "depositor-full", "addgene_id": "43966", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "file": "data/addgene_plasmids/43966.depositor-full.gb" }, @@ -20173,7 +25308,10 @@ "plasmid_name": "pDONR221_SLC25A46", "sequence-type": "addgene-full", "addgene_id": "131971", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131971.addgene-full.gb" }, @@ -20182,7 +25320,10 @@ "plasmid_name": "TFORF3308", "sequence-type": "addgene-full", "addgene_id": "144784", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144784.addgene-full.gb" }, @@ -20191,7 +25332,10 @@ "plasmid_name": "TFORF3354", "sequence-type": "addgene-full", "addgene_id": "144830", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144830.addgene-full.gb" }, @@ -20200,7 +25344,10 @@ "plasmid_name": "pDONR223-MCU-D261A", "sequence-type": "depositor-full", "addgene_id": "31729", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "file": "data/addgene_plasmids/31729.depositor-full.gb" }, @@ -20209,7 +25356,10 @@ "plasmid_name": "pHAGE-EGFR-S768I", "sequence-type": "addgene-full", "addgene_id": "116304", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116304.addgene-full.gb" }, @@ -20218,7 +25368,10 @@ "plasmid_name": "Ad-MKP-3 C293S", "sequence-type": "addgene-full", "addgene_id": "131525", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "file": "data/addgene_plasmids/131525.addgene-full.gb" }, @@ -20227,7 +25380,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF7a", "sequence-type": "addgene-full", "addgene_id": "168856", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168856.addgene-full.gb" }, @@ -20236,7 +25392,10 @@ "plasmid_name": "459 pME-etv2", "sequence-type": "depositor-full", "addgene_id": "49002", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49002.depositor-full.gb" }, @@ -20245,7 +25404,10 @@ "plasmid_name": "TFORF2988", "sequence-type": "addgene-full", "addgene_id": "144464", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144464.addgene-full.gb" }, @@ -20254,7 +25416,10 @@ "plasmid_name": "p3E-CaaX(tK)", "sequence-type": "addgene-full", "addgene_id": "109540", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109540.addgene-full.gb" }, @@ -20263,7 +25428,10 @@ "plasmid_name": "pDONR223_PTEN_p.G127R", "sequence-type": "addgene-full", "addgene_id": "81650", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -20275,7 +25443,6 @@ "plasmid_name": "p667-UBC-SCYL2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189912", - "references": [], "kit": null, "file": "data/addgene_plasmids/189912.addgene-full.gb" }, @@ -20284,7 +25451,10 @@ "plasmid_name": "pGLTR-S-PURO", "sequence-type": "depositor-full", "addgene_id": "58244", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "file": "data/addgene_plasmids/58244.depositor-full.gb" }, @@ -20293,7 +25463,10 @@ "plasmid_name": "pDONR221-SLC35F3_STOP", "sequence-type": "addgene-full", "addgene_id": "161275", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161275.addgene-full.gb" }, @@ -20302,7 +25475,10 @@ "plasmid_name": "pCellFree_G01", "sequence-type": "depositor-full", "addgene_id": "67135", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "file": "data/addgene_plasmids/67135.depositor-full.gb" }, @@ -20311,7 +25487,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP8", "sequence-type": "addgene-full", "addgene_id": "154407", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154407.addgene-full.gb" }, @@ -20320,7 +25499,10 @@ "plasmid_name": "pENT-L1-Kozak-Ensconsin-3XGFP-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186361", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186361.addgene-full.gb" }, @@ -20329,7 +25511,10 @@ "plasmid_name": "pGWT35S-mCherry-NLS", "sequence-type": "addgene-full", "addgene_id": "194049", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "file": "data/addgene_plasmids/194049.addgene-full.gb" }, @@ -20347,7 +25532,10 @@ "plasmid_name": "MAC_N_COMMD9", "sequence-type": "addgene-full", "addgene_id": "209681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209681.addgene-full.gb" }, @@ -20356,7 +25544,10 @@ "plasmid_name": "pDONR221_mmIrf1 (closed)", "sequence-type": "addgene-full", "addgene_id": "160097", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160097.addgene-full.gb" }, @@ -20365,7 +25556,10 @@ "plasmid_name": "pGP4G-REL2N91-ccdB", "sequence-type": "addgene-full", "addgene_id": "188444", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188444.addgene-full.gb" }, @@ -20374,7 +25568,10 @@ "plasmid_name": "pSelAct-KO", "sequence-type": "addgene-full", "addgene_id": "174374", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-07-21-0171-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/34890250" + ], "kit": null, "file": "data/addgene_plasmids/174374.addgene-full.gb" }, @@ -20395,7 +25592,9 @@ "plasmid_name": "pKC-4.06", "sequence-type": "addgene-full", "addgene_id": "112084", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29528287" + ], "kit": null, "file": "data/addgene_plasmids/112084.addgene-full.gb" }, @@ -20404,7 +25603,10 @@ "plasmid_name": "pDONR223_TP53_p.P278T", "sequence-type": "addgene-full", "addgene_id": "82762", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82762.addgene-full.gb" }, @@ -20413,7 +25615,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp10", "sequence-type": "addgene-full", "addgene_id": "168919", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168919.addgene-full.gb" }, @@ -20422,7 +25627,10 @@ "plasmid_name": "pMXs-GLIS1 (FLJ33315SAAN)", "sequence-type": "depositor-full", "addgene_id": "33274", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10106", + "https://www.ncbi.nlm.nih.gov/pubmed/21654807" + ], "kit": null, "file": "data/addgene_plasmids/33274.depositor-full.gb" }, @@ -20431,7 +25639,10 @@ "plasmid_name": "pSLIK_hygro_BirA_CDKN1A", "sequence-type": "addgene-full", "addgene_id": "136538", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136538.addgene-full.gb" }, @@ -20440,7 +25651,10 @@ "plasmid_name": "KZ901: pMVP (L3-L2) P2A-eGFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121772", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121772.addgene-full.gb" }, @@ -20449,7 +25663,10 @@ "plasmid_name": "pENTR-MPP1", "sequence-type": "addgene-full", "addgene_id": "221428", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221428.addgene-full.gb" }, @@ -20458,7 +25675,10 @@ "plasmid_name": "pGP4GY-cccdB", "sequence-type": "depositor-full", "addgene_id": "83878", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1324147111", + "https://www.ncbi.nlm.nih.gov/pubmed/24979769" + ], "kit": null, "file": "data/addgene_plasmids/83878.depositor-full.gb" }, @@ -20467,7 +25687,10 @@ "plasmid_name": "pAFMW-Nbr[C399-625]-Gwpep(Dm)", "sequence-type": "addgene-full", "addgene_id": "188590", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188590.addgene-full.gb" }, @@ -20476,7 +25699,10 @@ "plasmid_name": "pSAM2_mCherry_Mesp2", "sequence-type": "addgene-full", "addgene_id": "72693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72693.addgene-full.gb" }, @@ -20485,7 +25711,9 @@ "plasmid_name": "pDONR221-MAVS(v1)", "sequence-type": "addgene-full", "addgene_id": "166188", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166188.addgene-full.gb" }, @@ -20494,7 +25722,10 @@ "plasmid_name": "TFORF3174", "sequence-type": "addgene-full", "addgene_id": "144650", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144650.addgene-full.gb" }, @@ -20503,7 +25734,10 @@ "plasmid_name": "pDONR223_CASP8_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82999", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82999.addgene-full.gb" }, @@ -20512,7 +25746,10 @@ "plasmid_name": "pDONR223_CDK17_p.R177H", "sequence-type": "addgene-full", "addgene_id": "81464", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -20536,7 +25773,10 @@ "plasmid_name": "pDONR223_RBM11_WT", "sequence-type": "addgene-full", "addgene_id": "81784", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -20548,7 +25788,10 @@ "plasmid_name": "pAWH-largeT", "sequence-type": "addgene-full", "addgene_id": "133895", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/133895.addgene-full.gb" }, @@ -20557,7 +25800,10 @@ "plasmid_name": "pLenti CMV Blast DEST (706-1)", "sequence-type": "addgene-full", "addgene_id": "17451", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17451.addgene-full.gb" }, @@ -20566,7 +25812,10 @@ "plasmid_name": "pDONR223_SMAD2_WT", "sequence-type": "addgene-full", "addgene_id": "81830", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -20578,7 +25827,10 @@ "plasmid_name": "LOC110678930 NPY receptor", "sequence-type": "addgene-full", "addgene_id": "115379", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115379.addgene-full.gb" }, @@ -20587,7 +25839,10 @@ "plasmid_name": "pHAGE-BRAF-A598_T599delinsA", "sequence-type": "addgene-full", "addgene_id": "116130", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116130.addgene-full.gb" }, @@ -20596,7 +25851,10 @@ "plasmid_name": "pMOS030E: Entry vector for: ratiometric pHluorin (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163071", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163071.addgene-full.gb" }, @@ -20605,7 +25863,10 @@ "plasmid_name": "actc1b- mKate2-KDEL-pA", "sequence-type": "addgene-full", "addgene_id": "109494", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109494.addgene-full.gb" }, @@ -20614,7 +25875,10 @@ "plasmid_name": "908E", "sequence-type": "addgene-full", "addgene_id": "160238", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160238.addgene-full.gb" }, @@ -20623,7 +25887,6 @@ "plasmid_name": "R777-E278 Hs.RHOA-nostop", "sequence-type": "depositor-full", "addgene_id": "70562", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -20635,7 +25898,10 @@ "plasmid_name": "pUBQ10:WNFLS2-1", "sequence-type": "addgene-full", "addgene_id": "202189", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "file": "data/addgene_plasmids/202189.addgene-full.gb" }, @@ -20644,7 +25910,10 @@ "plasmid_name": "pDONR221-SLC16A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161065", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161065.addgene-full.gb" }, @@ -20653,7 +25922,6 @@ "plasmid_name": "R777-E345 Hs.TFDP2", "sequence-type": "depositor-full", "addgene_id": "70629", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -20665,7 +25933,10 @@ "plasmid_name": "pDONR223_PPP2R1A_p.S143F", "sequence-type": "addgene-full", "addgene_id": "81440", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -20677,7 +25948,10 @@ "plasmid_name": "actb2-lifeact-mKate2", "sequence-type": "addgene-full", "addgene_id": "109750", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109750.addgene-full.gb" }, @@ -20686,7 +25960,10 @@ "plasmid_name": "TFORF3198", "sequence-type": "addgene-full", "addgene_id": "144674", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144674.addgene-full.gb" }, @@ -20695,7 +25972,10 @@ "plasmid_name": "pMP71-hPDL-1", "sequence-type": "addgene-full", "addgene_id": "118631", - "references": [], + "references": [ + "https://doi.org/10.1158/2326-6066.CIR-18-0351", + "https://www.ncbi.nlm.nih.gov/pubmed/30659053" + ], "kit": null, "file": "data/addgene_plasmids/118631.addgene-full.gb" }, @@ -20704,7 +25984,10 @@ "plasmid_name": "pDONR221_MFSD14B", "sequence-type": "addgene-full", "addgene_id": "131881", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131881.addgene-full.gb" }, @@ -20713,7 +25996,10 @@ "plasmid_name": "plenti-UBC-Myc-gate-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107395", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107395.addgene-full.gb" }, @@ -20722,7 +26008,9 @@ "plasmid_name": "pAG415GPD-EGFP", "sequence-type": "addgene-full", "addgene_id": "166137", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166137.addgene-full.gb" }, @@ -20731,7 +26019,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST NET1A S46A", "sequence-type": "depositor-full", "addgene_id": "69818", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "file": "data/addgene_plasmids/69818.depositor-full.gb" }, @@ -20740,7 +26031,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP16_nostop", "sequence-type": "addgene-full", "addgene_id": "149318", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149318.addgene-full.gb" }, @@ -20749,7 +26043,6 @@ "plasmid_name": "pREP3xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79021", - "references": [], "kit": null, "file": "data/addgene_plasmids/79021.depositor-full.gb" }, @@ -20758,7 +26051,10 @@ "plasmid_name": "pHAGE-ARAF-R188H", "sequence-type": "addgene-full", "addgene_id": "116114", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116114.addgene-full.gb" }, @@ -20767,7 +26063,10 @@ "plasmid_name": "TFORF3118", "sequence-type": "addgene-full", "addgene_id": "144594", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144594.addgene-full.gb" }, @@ -20776,7 +26075,10 @@ "plasmid_name": "pMOS014: Grx1-roGFP2 glutathione redox sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163055", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163055.addgene-full.gb" }, @@ -20785,7 +26087,10 @@ "plasmid_name": "pDONR223_ROGDI_WT", "sequence-type": "addgene-full", "addgene_id": "81814", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -20797,7 +26102,10 @@ "plasmid_name": "pCFJ594 - pENTR[1-2](NeoR)", "sequence-type": "depositor-full", "addgene_id": "34878", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34878.depositor-full.gb" }, @@ -20806,7 +26114,10 @@ "plasmid_name": "pDONR221-SLC6A18_STOP", "sequence-type": "addgene-full", "addgene_id": "161385", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161385.addgene-full.gb" }, @@ -20815,7 +26126,10 @@ "plasmid_name": "pAAV2-CMV-GFP-BGHpA", "sequence-type": "addgene-full", "addgene_id": "190239", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190239.addgene-full.gb" }, @@ -20824,7 +26138,10 @@ "plasmid_name": "LIIbeta F 3-4", "sequence-type": "depositor-full", "addgene_id": "54360", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54360.depositor-full.gb" }, @@ -20833,7 +26150,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189879", - "references": [], "kit": null, "file": "data/addgene_plasmids/189879.addgene-full.gb" }, @@ -20842,7 +26158,10 @@ "plasmid_name": "pMuLE ENTR eGFP L5-L2", "sequence-type": "depositor-full", "addgene_id": "62183", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62183.depositor-full.gb" }, @@ -20851,7 +26170,10 @@ "plasmid_name": "A1-LCD-10R+10K", "sequence-type": "addgene-full", "addgene_id": "178671", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178671.addgene-full.gb" }, @@ -20860,7 +26182,10 @@ "plasmid_name": "pAG424GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14367", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -20872,7 +26197,10 @@ "plasmid_name": "pGGEV_6'_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49307", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -20884,7 +26212,10 @@ "plasmid_name": "pMpGE_En03-sgRNA-Target1 (MpRTN1)", "sequence-type": "addgene-full", "addgene_id": "186291", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.15787", + "https://www.ncbi.nlm.nih.gov/pubmed/35476214" + ], "kit": null, "file": "data/addgene_plasmids/186291.addgene-full.gb" }, @@ -20893,7 +26224,10 @@ "plasmid_name": "pLEX307-HCoV-NL63-3CL-C144A", "sequence-type": "addgene-full", "addgene_id": "160287", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160287.addgene-full.gb" }, @@ -20902,7 +26236,9 @@ "plasmid_name": "pMpGWB435", "sequence-type": "depositor-full", "addgene_id": "68700", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68700.depositor-full.gb" }, @@ -20911,7 +26247,10 @@ "plasmid_name": "pTKan-p35S::Csy4-pC4H::cogGFP (C44, JBEI-16338)", "sequence-type": "addgene-full", "addgene_id": "110144", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.6b00295", + "https://www.ncbi.nlm.nih.gov/pubmed/28094975" + ], "kit": null, "file": "data/addgene_plasmids/110144.addgene-full.gb" }, @@ -20920,7 +26259,10 @@ "plasmid_name": "pYPQ146", "sequence-type": "depositor-full", "addgene_id": "69298", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69298.depositor-full.gb" }, @@ -20929,7 +26271,10 @@ "plasmid_name": "pGWB404", "sequence-type": "depositor-full", "addgene_id": "74798", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74798.depositor-full.gb" }, @@ -20938,7 +26283,10 @@ "plasmid_name": "pDONR223_TPK1_WT", "sequence-type": "addgene-full", "addgene_id": "82926", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82926.addgene-full.gb" }, @@ -20947,7 +26295,10 @@ "plasmid_name": "pMSCV_IRES_GFP_CD16a", "sequence-type": "addgene-full", "addgene_id": "196189", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2023.102224", + "https://www.ncbi.nlm.nih.gov/pubmed/37071532" + ], "kit": null, "file": "data/addgene_plasmids/196189.addgene-full.gb" }, @@ -20956,7 +26307,10 @@ "plasmid_name": "KH101: pMVP (L3-L2) HA epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121756", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121756.addgene-full.gb" }, @@ -20965,7 +26319,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND L370G", "sequence-type": "addgene-full", "addgene_id": "169970", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169970.addgene-full.gb" }, @@ -20974,7 +26331,10 @@ "plasmid_name": "UBE2LB_pLX307", "sequence-type": "addgene-full", "addgene_id": "98380", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98380.addgene-full.gb" }, @@ -20983,7 +26343,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF8", "sequence-type": "addgene-full", "addgene_id": "154423", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154423.addgene-full.gb" }, @@ -20992,7 +26355,10 @@ "plasmid_name": "pME-mScarlet-NS", "sequence-type": "addgene-full", "addgene_id": "140874", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/140874.addgene-full.gb" }, @@ -21001,7 +26367,10 @@ "plasmid_name": "MLKS2del4ec", "sequence-type": "addgene-full", "addgene_id": "130857", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "file": "data/addgene_plasmids/130857.addgene-full.gb" }, @@ -21010,7 +26379,10 @@ "plasmid_name": "pDONR223_FCGR3B_p.L218P", "sequence-type": "addgene-full", "addgene_id": "82746", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82746.addgene-full.gb" }, @@ -21019,7 +26391,10 @@ "plasmid_name": "JDW 771 (pTol2-kdrl:EYFP-hsKRAS4B-WT-ac/Y)", "sequence-type": "addgene-full", "addgene_id": "156413", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156413.addgene-full.gb" }, @@ -21028,7 +26403,10 @@ "plasmid_name": "pTALdNC-AAVS1_T2", "sequence-type": "addgene-full", "addgene_id": "80496", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "file": "data/addgene_plasmids/80496.addgene-full.gb" }, @@ -21037,7 +26415,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-205", "sequence-type": "depositor-full", "addgene_id": "46679", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46679.depositor-full.gb" }, @@ -21046,7 +26427,9 @@ "plasmid_name": "pLV-EF1a-CRISPRoffv2.1-IRES-BlastR", "sequence-type": "addgene-full", "addgene_id": "207180", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207180.addgene-full.gb" }, @@ -21055,7 +26438,10 @@ "plasmid_name": "pMEtmem88aP1gfp", "sequence-type": "depositor-full", "addgene_id": "90132", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90132.depositor-full.gb" }, @@ -21064,7 +26450,10 @@ "plasmid_name": "pGWB445", "sequence-type": "depositor-full", "addgene_id": "74831", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74831.depositor-full.gb" }, @@ -21073,7 +26462,6 @@ "plasmid_name": "pLenti6.3/Capsid", "sequence-type": "addgene-full", "addgene_id": "120834", - "references": [], "kit": null, "file": "data/addgene_plasmids/120834.addgene-full.gb" }, @@ -21082,7 +26470,10 @@ "plasmid_name": "pDONR221_SLC10A5", "sequence-type": "addgene-full", "addgene_id": "131955", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131955.addgene-full.gb" }, @@ -21091,7 +26482,10 @@ "plasmid_name": "pAG305GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14329", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -21103,7 +26497,10 @@ "plasmid_name": "pHAGE-EPHA2-G391R", "sequence-type": "addgene-full", "addgene_id": "116320", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116320.addgene-full.gb" }, @@ -21112,7 +26509,10 @@ "plasmid_name": "MiniCoopR mitfa:SPRED1", "sequence-type": "addgene-full", "addgene_id": "118851", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118851.addgene-full.gb" }, @@ -21121,7 +26521,10 @@ "plasmid_name": "TFORF3338", "sequence-type": "addgene-full", "addgene_id": "144814", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144814.addgene-full.gb" }, @@ -21130,7 +26533,10 @@ "plasmid_name": "p3E-mVenus", "sequence-type": "depositor-full", "addgene_id": "67719", - "references": [], + "references": [ + "https://doi.org/10.3389/fncel.2015.00321", + "https://www.ncbi.nlm.nih.gov/pubmed/26379496" + ], "kit": null, "file": "data/addgene_plasmids/67719.depositor-full.gb" }, @@ -21139,7 +26545,10 @@ "plasmid_name": "pHPdestVenus", "sequence-type": "depositor-full", "addgene_id": "24568", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.20637", + "https://www.ncbi.nlm.nih.gov/pubmed/20506180" + ], "kit": null, "file": "data/addgene_plasmids/24568.depositor-full.gb" }, @@ -21148,7 +26557,10 @@ "plasmid_name": "pDONR223_MAPK7_p.D46N", "sequence-type": "addgene-full", "addgene_id": "82869", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82869.addgene-full.gb" }, @@ -21157,7 +26569,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hADAM10(aa1-213)-GST", "sequence-type": "addgene-full", "addgene_id": "189562", - "references": [], "kit": null, "file": "data/addgene_plasmids/189562.addgene-full.gb" }, @@ -21166,7 +26577,10 @@ "plasmid_name": "pDONR223_CHSY3_p.R350H", "sequence-type": "addgene-full", "addgene_id": "81594", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -21178,7 +26592,10 @@ "plasmid_name": "pEBTetD-SNAP-Centrin3", "sequence-type": "addgene-full", "addgene_id": "136807", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136807.addgene-full.gb" }, @@ -21187,7 +26604,10 @@ "plasmid_name": "pCAGGS-4580NES", "sequence-type": "addgene-full", "addgene_id": "138376", - "references": [], + "references": [ + "https://doi.org/10.1021/acssensors.9b01941", + "https://www.ncbi.nlm.nih.gov/pubmed/32101394" + ], "kit": null, "file": "data/addgene_plasmids/138376.addgene-full.gb" }, @@ -21196,7 +26616,6 @@ "plasmid_name": "pCLX-RIP-mCherry", "sequence-type": "addgene-full", "addgene_id": "114310", - "references": [], "kit": null, "file": "data/addgene_plasmids/114310.addgene-full.gb" }, @@ -21205,7 +26624,6 @@ "plasmid_name": "R777-E016 Hs.BRAF-nostop", "sequence-type": "depositor-full", "addgene_id": "70300", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -21217,7 +26635,10 @@ "plasmid_name": "pDONR223_NRAS_p.Q61L", "sequence-type": "addgene-full", "addgene_id": "81674", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -21229,7 +26650,10 @@ "plasmid_name": "5'-3xFLAG Chtop+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212081", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212081.addgene-full.gb" }, @@ -21238,7 +26662,10 @@ "plasmid_name": "pDONR221-SLC35F5_STOP", "sequence-type": "addgene-full", "addgene_id": "161251", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161251.addgene-full.gb" }, @@ -21247,7 +26674,10 @@ "plasmid_name": "GAL4BD-VP16/pDON207", "sequence-type": "addgene-full", "addgene_id": "201230", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16234", + "https://www.ncbi.nlm.nih.gov/pubmed/37323061" + ], "kit": null, "file": "data/addgene_plasmids/201230.addgene-full.gb" }, @@ -21256,7 +26686,10 @@ "plasmid_name": "p3E-EHD1a", "sequence-type": "addgene-full", "addgene_id": "109564", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109564.addgene-full.gb" }, @@ -21265,7 +26698,10 @@ "plasmid_name": "TFORF2964", "sequence-type": "addgene-full", "addgene_id": "144440", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144440.addgene-full.gb" }, @@ -21274,7 +26710,10 @@ "plasmid_name": "pDONR221-ZNF518B", "sequence-type": "depositor-full", "addgene_id": "101567", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101567.depositor-full.gb" }, @@ -21283,7 +26722,10 @@ "plasmid_name": "pCW-eGFP-SHLD2", "sequence-type": "addgene-full", "addgene_id": "114119", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "file": "data/addgene_plasmids/114119.addgene-full.gb" }, @@ -21292,7 +26734,10 @@ "plasmid_name": "pYPQ230-D156R (ttLbCas12a)", "sequence-type": "addgene-full", "addgene_id": "195366", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "file": "data/addgene_plasmids/195366.addgene-full.gb" }, @@ -21301,7 +26746,10 @@ "plasmid_name": "pLX_317-C7orf26v1", "sequence-type": "addgene-full", "addgene_id": "178537", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.12.005", + "https://www.ncbi.nlm.nih.gov/pubmed/35085500" + ], "kit": null, "file": "data/addgene_plasmids/178537.addgene-full.gb" }, @@ -21310,7 +26758,10 @@ "plasmid_name": "pDONR221-FLVCR1_STOP", "sequence-type": "addgene-full", "addgene_id": "161058", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161058.addgene-full.gb" }, @@ -21319,7 +26770,10 @@ "plasmid_name": "pDONR223_NPDC1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82980", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82980.addgene-full.gb" }, @@ -21328,7 +26782,10 @@ "plasmid_name": "JC001: pMVP/Ad/RGD-DEST", "sequence-type": "addgene-full", "addgene_id": "121844", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121844.addgene-full.gb" }, @@ -21337,7 +26794,10 @@ "plasmid_name": "pGWB21_TaNAM-A1", "sequence-type": "addgene-full", "addgene_id": "124572", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "file": "data/addgene_plasmids/124572.addgene-full.gb" }, @@ -21346,7 +26806,10 @@ "plasmid_name": "pPN461", "sequence-type": "addgene-full", "addgene_id": "137877", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "file": "data/addgene_plasmids/137877.addgene-full.gb" }, @@ -21355,7 +26818,10 @@ "plasmid_name": "TFORF3173", "sequence-type": "addgene-full", "addgene_id": "144649", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144649.addgene-full.gb" }, @@ -21364,7 +26830,10 @@ "plasmid_name": "MSCV-N-Flag-HA-IRES-PURO", "sequence-type": "addgene-full", "addgene_id": "41033", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/41033.addgene-full.gb" }, @@ -21373,7 +26842,10 @@ "plasmid_name": "pUBQ10:WNFLS2-2", "sequence-type": "addgene-full", "addgene_id": "202190", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "file": "data/addgene_plasmids/202190.addgene-full.gb" }, @@ -21382,7 +26854,10 @@ "plasmid_name": "pMOS031E: Entry vector for: superecliptic pHluorin (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163068", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163068.addgene-full.gb" }, @@ -21391,7 +26866,10 @@ "plasmid_name": "p16 GPS1", "sequence-type": "addgene-full", "addgene_id": "101083", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-017-0021-9", + "https://www.ncbi.nlm.nih.gov/pubmed/28970478" + ], "kit": null, "file": "data/addgene_plasmids/101083.addgene-full.gb" }, @@ -21400,7 +26878,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF7B_nostop", "sequence-type": "addgene-full", "addgene_id": "149325", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149325.addgene-full.gb" }, @@ -21409,7 +26890,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF3a", "sequence-type": "depositor-full", "addgene_id": "168877", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168877.depositor-full.gb" }, @@ -21418,7 +26902,10 @@ "plasmid_name": "pHAGE-BRAF-A404Cfs*9", "sequence-type": "addgene-full", "addgene_id": "116129", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116129.addgene-full.gb" }, @@ -21427,7 +26914,10 @@ "plasmid_name": "pDONR223_TRIM55_WT", "sequence-type": "addgene-full", "addgene_id": "81829", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -21451,7 +26941,10 @@ "plasmid_name": "pEN_TTmiRc2_BirA", "sequence-type": "addgene-full", "addgene_id": "136521", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136521.addgene-full.gb" }, @@ -21460,7 +26953,10 @@ "plasmid_name": "pDONR221-SLC51B_STOP", "sequence-type": "addgene-full", "addgene_id": "161323", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161323.addgene-full.gb" }, @@ -21469,7 +26965,10 @@ "plasmid_name": "FoRC.PGa", "sequence-type": "addgene-full", "addgene_id": "84584", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22984", + "https://www.ncbi.nlm.nih.gov/pubmed/27696669" + ], "kit": null, "file": "data/addgene_plasmids/84584.addgene-full.gb" }, @@ -21478,7 +26977,10 @@ "plasmid_name": "pDONR223_MAP4K3_p.Q473H", "sequence-type": "addgene-full", "addgene_id": "81706", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -21490,7 +26992,10 @@ "plasmid_name": "pLX304-DCK*-GW-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176289", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "file": "data/addgene_plasmids/176289.addgene-full.gb" }, @@ -21499,7 +27004,10 @@ "plasmid_name": "TFORF3056", "sequence-type": "addgene-full", "addgene_id": "144532", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144532.addgene-full.gb" }, @@ -21508,7 +27016,6 @@ "plasmid_name": "R777-E246 Hs.RASGRP2-nostop", "sequence-type": "depositor-full", "addgene_id": "70530", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -21520,7 +27027,10 @@ "plasmid_name": "pAG306GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14283", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -21532,7 +27042,9 @@ "plasmid_name": "pDONR221-NCOA5", "sequence-type": "addgene-full", "addgene_id": "166191", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166191.addgene-full.gb" }, @@ -21541,7 +27053,10 @@ "plasmid_name": "TFORF3490", "sequence-type": "addgene-full", "addgene_id": "144966", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144966.addgene-full.gb" }, @@ -21550,7 +27065,10 @@ "plasmid_name": "PABPN1L", "sequence-type": "addgene-full", "addgene_id": "155807", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155807.addgene-full.gb" }, @@ -21559,7 +27077,10 @@ "plasmid_name": "pAFMW-Nbr[C399-625]-Gwpep(Mm)", "sequence-type": "addgene-full", "addgene_id": "188589", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188589.addgene-full.gb" }, @@ -21568,7 +27089,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP13_stop", "sequence-type": "addgene-full", "addgene_id": "168554", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168554.addgene-full.gb" }, @@ -21577,7 +27101,6 @@ "plasmid_name": "pENTR-ABCC1_S769N_STOP", "sequence-type": "addgene-full", "addgene_id": "221431", - "references": [], "kit": null, "file": "data/addgene_plasmids/221431.addgene-full.gb" }, @@ -21586,7 +27109,10 @@ "plasmid_name": "pLENTI CMV GFP-TREX1 G306A BLAST", "sequence-type": "addgene-full", "addgene_id": "164241", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2020.12.037", + "https://www.ncbi.nlm.nih.gov/pubmed/33476576" + ], "kit": null, "file": "data/addgene_plasmids/164241.addgene-full.gb" }, @@ -21595,7 +27121,6 @@ "plasmid_name": "pAM-35s-Slah3-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102385", - "references": [], "kit": null, "file": "data/addgene_plasmids/102385.addgene-full.gb" }, @@ -21604,7 +27129,10 @@ "plasmid_name": "MAC3_C_VPS35L", "sequence-type": "addgene-full", "addgene_id": "209698", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209698.addgene-full.gb" }, @@ -21613,7 +27141,10 @@ "plasmid_name": "pGWT35S-VN154", "sequence-type": "addgene-full", "addgene_id": "194050", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "file": "data/addgene_plasmids/194050.addgene-full.gb" }, @@ -21622,7 +27153,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mCherry-RfA", "sequence-type": "addgene-full", "addgene_id": "186378", - "references": [], "kit": null, "file": "data/addgene_plasmids/186378.addgene-full.gb" }, @@ -21631,7 +27161,9 @@ "plasmid_name": "pME V5 mScarlet-I (JDW 1323)", "sequence-type": "addgene-full", "addgene_id": "224487", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224487.addgene-full.gb" }, @@ -21640,7 +27172,10 @@ "plasmid_name": "pDONR-IAA31", "sequence-type": "depositor-full", "addgene_id": "83864", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83864.depositor-full.gb" }, @@ -21649,7 +27184,10 @@ "plasmid_name": "pThy1-Autobow", "sequence-type": "addgene-full", "addgene_id": "45187", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2450", + "https://www.ncbi.nlm.nih.gov/pubmed/23817127" + ], "kit": null, "file": "data/addgene_plasmids/45187.addgene-full.gb" }, @@ -21658,7 +27196,10 @@ "plasmid_name": "pDONR223_PTPN12_p.E5G", "sequence-type": "addgene-full", "addgene_id": "81532", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -21670,7 +27211,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-Envelope", "sequence-type": "depositor-full", "addgene_id": "168839", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168839.depositor-full.gb" }, @@ -21679,7 +27223,10 @@ "plasmid_name": "pDONR221-SLC11A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161117", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161117.addgene-full.gb" }, @@ -21688,7 +27235,10 @@ "plasmid_name": "pHAGE-FGFR3-S249C", "sequence-type": "addgene-full", "addgene_id": "116386", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116386.addgene-full.gb" }, @@ -21697,7 +27247,10 @@ "plasmid_name": "TFORF3230", "sequence-type": "addgene-full", "addgene_id": "144706", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144706.addgene-full.gb" }, @@ -21706,7 +27259,10 @@ "plasmid_name": "actc1b-mKate2-rab32b", "sequence-type": "addgene-full", "addgene_id": "109622", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109622.addgene-full.gb" }, @@ -21715,7 +27271,10 @@ "plasmid_name": "TFORF3353", "sequence-type": "addgene-full", "addgene_id": "144829", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144829.addgene-full.gb" }, @@ -21724,7 +27283,10 @@ "plasmid_name": "pStart-C2", "sequence-type": "addgene-full", "addgene_id": "20345", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "file": "data/addgene_plasmids/20345.addgene-full.gb" }, @@ -21733,7 +27295,10 @@ "plasmid_name": "pDONR221_SLC25A23", "sequence-type": "addgene-full", "addgene_id": "131968", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131968.addgene-full.gb" }, @@ -21742,7 +27307,10 @@ "plasmid_name": "p3E-APEX2", "sequence-type": "addgene-full", "addgene_id": "108894", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "file": "data/addgene_plasmids/108894.addgene-full.gb" }, @@ -21751,7 +27319,10 @@ "plasmid_name": "pME-nCas9n-P2A-TagBFP2-pA", "sequence-type": "addgene-full", "addgene_id": "176026", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/176026.addgene-full.gb" }, @@ -21760,7 +27331,10 @@ "plasmid_name": "pDONR223_ERBB2_p.S310F", "sequence-type": "addgene-full", "addgene_id": "82854", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82854.addgene-full.gb" }, @@ -21769,7 +27343,10 @@ "plasmid_name": "pDONR221-kcnj14", "sequence-type": "addgene-full", "addgene_id": "173144", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173144.addgene-full.gb" }, @@ -21778,7 +27355,10 @@ "plasmid_name": "Lenti-EFS-hTSC1-T2A-Bsd", "sequence-type": "addgene-full", "addgene_id": "193199", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.111990", + "https://www.ncbi.nlm.nih.gov/pubmed/36640300" + ], "kit": null, "file": "data/addgene_plasmids/193199.addgene-full.gb" }, @@ -21787,7 +27367,10 @@ "plasmid_name": "pCG142", "sequence-type": "depositor-full", "addgene_id": "17246", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/17246.depositor-full.gb" }, @@ -21796,7 +27379,10 @@ "plasmid_name": "CSNK1A1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98326", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98326.addgene-full.gb" }, @@ -21805,7 +27391,9 @@ "plasmid_name": "pRS423-FjTAL(JBEI-15466)", "sequence-type": "addgene-full", "addgene_id": "87936", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27871334" + ], "kit": null, "file": "data/addgene_plasmids/87936.addgene-full.gb" }, @@ -21814,7 +27402,10 @@ "plasmid_name": "pDONR223_STK19_p.E88K", "sequence-type": "addgene-full", "addgene_id": "81649", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -21826,7 +27417,9 @@ "plasmid_name": "p5E-elavl3", "sequence-type": "addgene-full", "addgene_id": "82400", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82400.addgene-full.gb" }, @@ -21835,7 +27428,10 @@ "plasmid_name": "p5E--3mnx1", "sequence-type": "depositor-full", "addgene_id": "74632", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -21847,7 +27443,10 @@ "plasmid_name": "pME-lamp1", "sequence-type": "addgene-full", "addgene_id": "109559", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109559.addgene-full.gb" }, @@ -21856,7 +27455,10 @@ "plasmid_name": "pMLS640", "sequence-type": "addgene-full", "addgene_id": "188892", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "file": "data/addgene_plasmids/188892.addgene-full.gb" }, @@ -21865,7 +27467,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(TM-K206A)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128679", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128679.addgene-full.gb" }, @@ -21874,7 +27479,10 @@ "plasmid_name": "pLenti GW-NL-myc", "sequence-type": "addgene-full", "addgene_id": "113455", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113455.addgene-full.gb" }, @@ -21883,7 +27491,10 @@ "plasmid_name": "pENTR223-BFRF3", "sequence-type": "addgene-full", "addgene_id": "195778", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195778.addgene-full.gb" }, @@ -21892,7 +27503,10 @@ "plasmid_name": "pDONR201-Eps8L2_494-546", "sequence-type": "addgene-full", "addgene_id": "196531", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196531.addgene-full.gb" }, @@ -21901,7 +27515,10 @@ "plasmid_name": "pDONR221-SFXN4_STOP", "sequence-type": "addgene-full", "addgene_id": "161446", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161446.addgene-full.gb" }, @@ -21910,7 +27527,10 @@ "plasmid_name": "pME-MmCav1", "sequence-type": "addgene-full", "addgene_id": "170527", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64630", + "https://www.ncbi.nlm.nih.gov/pubmed/33904409" + ], "kit": null, "file": "data/addgene_plasmids/170527.addgene-full.gb" }, @@ -21919,7 +27539,9 @@ "plasmid_name": "pMpGWB109", "sequence-type": "depositor-full", "addgene_id": "68563", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68563.depositor-full.gb" }, @@ -21928,7 +27550,10 @@ "plasmid_name": "pCFJ2369 - intron GG1 - 250bp", "sequence-type": "addgene-full", "addgene_id": "159877", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159877.addgene-full.gb" }, @@ -21937,7 +27562,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.F182I", "sequence-type": "addgene-full", "addgene_id": "81383", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -21949,7 +27577,10 @@ "plasmid_name": "pDONR223-EEF2K", "sequence-type": "addgene-full", "addgene_id": "23726", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -21961,7 +27592,10 @@ "plasmid_name": "pHAGE-PIK3CA-R818C", "sequence-type": "addgene-full", "addgene_id": "116537", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116537.addgene-full.gb" }, @@ -21970,7 +27604,10 @@ "plasmid_name": "pDEST-DHFR F[1,2]-C (TRP1)", "sequence-type": "addgene-full", "addgene_id": "177795", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac045", + "https://www.ncbi.nlm.nih.gov/pubmed/35137167" + ], "kit": null, "file": "data/addgene_plasmids/177795.addgene-full.gb" }, @@ -21979,7 +27616,10 @@ "plasmid_name": "pDONR223-PDGFRA", "sequence-type": "addgene-full", "addgene_id": "23892", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -21991,7 +27631,10 @@ "plasmid_name": "pUBQ10-mNeonGreen-GW", "sequence-type": "addgene-full", "addgene_id": "209352", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209352.addgene-full.gb" }, @@ -22000,7 +27643,10 @@ "plasmid_name": "pEN_TT 3XFLAG-S37A-GATA6-3XAU1_RNAi resistant", "sequence-type": "depositor-full", "addgene_id": "72924", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "file": "data/addgene_plasmids/72924.depositor-full.gb" }, @@ -22009,7 +27655,10 @@ "plasmid_name": "pEntr-Tbx5flbio", "sequence-type": "addgene-full", "addgene_id": "32968", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1016959108", + "https://www.ncbi.nlm.nih.gov/pubmed/21415370" + ], "kit": null, "file": "data/addgene_plasmids/32968.addgene-full.gb" }, @@ -22018,7 +27667,10 @@ "plasmid_name": "pDONR221_SLCO1C1", "sequence-type": "addgene-full", "addgene_id": "132224", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132224.addgene-full.gb" }, @@ -22027,7 +27679,10 @@ "plasmid_name": "pTORGm43GWC", "sequence-type": "addgene-full", "addgene_id": "112903", - "references": [], + "references": [ + "https://doi.org/10.1186/s12866-019-1642-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31775609" + ], "kit": null, "file": "data/addgene_plasmids/112903.addgene-full.gb" }, @@ -22036,7 +27691,10 @@ "plasmid_name": "pUASTP2", "sequence-type": "depositor-full", "addgene_id": "13843", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.106.056945", + "https://www.ncbi.nlm.nih.gov/pubmed/16547094" + ], "kit": null, "file": "data/addgene_plasmids/13843.depositor-full.gb" }, @@ -22045,7 +27703,10 @@ "plasmid_name": "pDONR223_NRAS_WT", "sequence-type": "addgene-full", "addgene_id": "82151", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82151.addgene-full.gb" }, @@ -22054,7 +27715,10 @@ "plasmid_name": "pDest-686 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161889", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -22066,7 +27730,10 @@ "plasmid_name": "pDONR223_REG1A_p.E80K", "sequence-type": "addgene-full", "addgene_id": "81318", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -22078,7 +27745,10 @@ "plasmid_name": "C413-E15: attB4-EF1p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162920", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -22090,7 +27760,10 @@ "plasmid_name": "pLgw NKX2-5-V5-EcoDam", "sequence-type": "addgene-full", "addgene_id": "98597", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98597.addgene-full.gb" }, @@ -22099,7 +27772,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 1-64)", "sequence-type": "addgene-full", "addgene_id": "119310", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119310.addgene-full.gb" }, @@ -22108,7 +27784,10 @@ "plasmid_name": "pKH144_mCherry-YIPF4 WT", "sequence-type": "addgene-full", "addgene_id": "214972", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "file": "data/addgene_plasmids/214972.addgene-full.gb" }, @@ -22117,7 +27796,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS3", "sequence-type": "addgene-full", "addgene_id": "145355", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145355.addgene-full.gb" }, @@ -22126,7 +27808,10 @@ "plasmid_name": "AAEL003747 PK R", "sequence-type": "addgene-full", "addgene_id": "115405", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115405.addgene-full.gb" }, @@ -22135,7 +27820,10 @@ "plasmid_name": "pPB-cT3G-cERP2-LHX1", "sequence-type": "addgene-full", "addgene_id": "192905", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192905.addgene-full.gb" }, @@ -22144,7 +27832,10 @@ "plasmid_name": "pEZYegfp", "sequence-type": "addgene-full", "addgene_id": "18671", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18671.addgene-full.gb" }, @@ -22153,7 +27844,10 @@ "plasmid_name": "pCMU-MTUBr", "sequence-type": "depositor-full", "addgene_id": "61196", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61196.depositor-full.gb" }, @@ -22162,7 +27856,10 @@ "plasmid_name": "pg-EGFP-HIF-2alpha", "sequence-type": "addgene-full", "addgene_id": "87207", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M113.500405", + "https://www.ncbi.nlm.nih.gov/pubmed/24394419" + ], "kit": null, "file": "data/addgene_plasmids/87207.addgene-full.gb" }, @@ -22171,7 +27868,6 @@ "plasmid_name": "Hs.KRAS4b R73K", "sequence-type": "depositor-full", "addgene_id": "83163", - "references": [], "kit": null, "file": "data/addgene_plasmids/83163.depositor-full.gb" }, @@ -22180,7 +27876,10 @@ "plasmid_name": "pWZL Neo Myr Flag CDKN1B", "sequence-type": "addgene-full", "addgene_id": "20420", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20420.addgene-full.gb" }, @@ -22189,7 +27888,10 @@ "plasmid_name": "pHAGE-TBC1D3B", "sequence-type": "addgene-full", "addgene_id": "116798", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116798.addgene-full.gb" }, @@ -22198,7 +27900,10 @@ "plasmid_name": "pENTR221-SMAD3", "sequence-type": "addgene-full", "addgene_id": "79507", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79507.addgene-full.gb" }, @@ -22207,7 +27912,10 @@ "plasmid_name": "pCW-GFP-CtIP", "sequence-type": "addgene-full", "addgene_id": "71109", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71109.addgene-full.gb" }, @@ -22216,7 +27924,10 @@ "plasmid_name": "pBullet-pm-n", "sequence-type": "depositor-full", "addgene_id": "53077", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53077.depositor-full.gb" }, @@ -22225,7 +27936,10 @@ "plasmid_name": "pDONR221_SLC20A1", "sequence-type": "addgene-full", "addgene_id": "132010", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132010.addgene-full.gb" }, @@ -22234,7 +27948,10 @@ "plasmid_name": "pCM5.36", "sequence-type": "depositor-full", "addgene_id": "19394", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19394.depositor-full.gb" }, @@ -22243,7 +27960,10 @@ "plasmid_name": "pLX302_FOXA1-V5", "sequence-type": "addgene-full", "addgene_id": "70090", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.3419", + "https://www.ncbi.nlm.nih.gov/pubmed/26457646" + ], "kit": null, "file": "data/addgene_plasmids/70090.addgene-full.gb" }, @@ -22252,7 +27972,10 @@ "plasmid_name": "ph3b", "sequence-type": "depositor-full", "addgene_id": "32110", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1002161", + "https://www.ncbi.nlm.nih.gov/pubmed/21829355" + ], "kit": null, "file": "data/addgene_plasmids/32110.depositor-full.gb" }, @@ -22261,7 +27984,6 @@ "plasmid_name": "R777-E120 Hs.KSR2-nostop", "sequence-type": "depositor-full", "addgene_id": "70404", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -22273,7 +27995,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term SP100", "sequence-type": "addgene-full", "addgene_id": "187584", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187584.addgene-full.gb" }, @@ -22282,7 +28007,10 @@ "plasmid_name": "pMuLE ENTR SV40 tdTomato L3-L2", "sequence-type": "depositor-full", "addgene_id": "62153", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62153.depositor-full.gb" }, @@ -22291,7 +28019,10 @@ "plasmid_name": "221 pCS 3MT DEST", "sequence-type": "depositor-full", "addgene_id": "13070", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/13070.depositor-full.gb" }, @@ -22300,7 +28031,10 @@ "plasmid_name": "pHAGE-TGFBR2-V376M", "sequence-type": "addgene-full", "addgene_id": "116703", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116703.addgene-full.gb" }, @@ -22309,7 +28043,10 @@ "plasmid_name": "pGAN230", "sequence-type": "addgene-full", "addgene_id": "131122", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/29056345" + ], "kit": null, "file": "data/addgene_plasmids/131122.addgene-full.gb" }, @@ -22318,7 +28055,6 @@ "plasmid_name": "p667-UBC-hcRed-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135239", - "references": [], "kit": null, "file": "data/addgene_plasmids/135239.addgene-full.gb" }, @@ -22327,7 +28063,6 @@ "plasmid_name": "IDG_CLCC1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161672", - "references": [], "kit": null, "file": "data/addgene_plasmids/161672.addgene-full.gb" }, @@ -22336,7 +28071,10 @@ "plasmid_name": "pDONR223_RHEB_WT", "sequence-type": "addgene-full", "addgene_id": "81257", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81257.addgene-full.gb" }, @@ -22345,7 +28083,9 @@ "plasmid_name": "Shim_TrpRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202653", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "file": "data/addgene_plasmids/202653.addgene-full.gb" }, @@ -22354,7 +28094,10 @@ "plasmid_name": "GFP-TRIM33", "sequence-type": "addgene-full", "addgene_id": "65398", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65398.addgene-full.gb" }, @@ -22363,7 +28106,10 @@ "plasmid_name": "pDONR221_SLC8A1", "sequence-type": "addgene-full", "addgene_id": "132162", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132162.addgene-full.gb" }, @@ -22372,7 +28118,10 @@ "plasmid_name": "Flag-HA-LOC220594", "sequence-type": "addgene-full", "addgene_id": "22562", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22562.addgene-full.gb" }, @@ -22381,7 +28130,10 @@ "plasmid_name": "pLenti PGK mKate2-OGT D554N (Puro)", "sequence-type": "addgene-full", "addgene_id": "154292", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154292.addgene-full.gb" }, @@ -22390,7 +28142,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0530-luc2", "sequence-type": "addgene-full", "addgene_id": "214660", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214660.addgene-full.gb" }, @@ -22399,7 +28154,10 @@ "plasmid_name": "pCW57.1 KBTBD4 WT", "sequence-type": "addgene-full", "addgene_id": "184624", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-022-00983-4", + "https://www.ncbi.nlm.nih.gov/pubmed/35379950" + ], "kit": null, "file": "data/addgene_plasmids/184624.addgene-full.gb" }, @@ -22408,7 +28166,10 @@ "plasmid_name": "pDONR223_SMAD5_WT", "sequence-type": "addgene-full", "addgene_id": "82217", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82217.addgene-full.gb" }, @@ -22417,7 +28178,10 @@ "plasmid_name": "pB-Halo,IRES-eGFP", "sequence-type": "addgene-full", "addgene_id": "164519", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.10.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33080218" + ], "kit": null, "file": "data/addgene_plasmids/164519.addgene-full.gb" }, @@ -22426,7 +28190,10 @@ "plasmid_name": "pDONR221-MFSD12_STOP", "sequence-type": "depositor-full", "addgene_id": "161106", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161106.depositor-full.gb" }, @@ -22435,7 +28202,10 @@ "plasmid_name": "MAC_N_ELK3", "sequence-type": "addgene-full", "addgene_id": "167750", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167750.addgene-full.gb" }, @@ -22444,7 +28214,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_111del", "sequence-type": "depositor-full", "addgene_id": "65659", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65659.depositor-full.gb" }, @@ -22453,7 +28226,10 @@ "plasmid_name": "GET1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176985", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176985.addgene-full.gb" }, @@ -22462,7 +28238,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF8", "sequence-type": "addgene-full", "addgene_id": "169395", - "references": [], "kit": null, "file": "data/addgene_plasmids/169395.addgene-full.gb" }, @@ -22471,7 +28246,10 @@ "plasmid_name": "pDONR221_UNC93A", "sequence-type": "addgene-full", "addgene_id": "132282", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132282.addgene-full.gb" }, @@ -22480,7 +28258,10 @@ "plasmid_name": "pDONR221_SLC6A18", "sequence-type": "addgene-full", "addgene_id": "132219", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132219.addgene-full.gb" }, @@ -22489,7 +28270,10 @@ "plasmid_name": "pHAGE-PIK3R1-G353R", "sequence-type": "addgene-full", "addgene_id": "116591", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116591.addgene-full.gb" }, @@ -22498,7 +28282,10 @@ "plasmid_name": "pDONR223_GZMA_p.G210E", "sequence-type": "addgene-full", "addgene_id": "81325", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -22510,7 +28297,6 @@ "plasmid_name": "IDG_GPR89B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161700", - "references": [], "kit": null, "file": "data/addgene_plasmids/161700.addgene-full.gb" }, @@ -22519,7 +28305,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MAPK15_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170581", - "references": [], "kit": null, "file": "data/addgene_plasmids/170581.addgene-full.gb" }, @@ -22528,7 +28313,10 @@ "plasmid_name": "pmCellFree _KA2_ZIKV NS5", "sequence-type": "addgene-full", "addgene_id": "145368", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145368.addgene-full.gb" }, @@ -22537,7 +28325,10 @@ "plasmid_name": "pLenti GW V5 Eco/Dam mse LaminA", "sequence-type": "addgene-full", "addgene_id": "182674", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.141028.112", + "https://www.ncbi.nlm.nih.gov/pubmed/23124521" + ], "kit": null, "file": "data/addgene_plasmids/182674.addgene-full.gb" }, @@ -22546,7 +28337,10 @@ "plasmid_name": "pJA252", "sequence-type": "depositor-full", "addgene_id": "21512", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "file": "data/addgene_plasmids/21512.depositor-full.gb" }, @@ -22555,7 +28349,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Lb", "sequence-type": "addgene-full", "addgene_id": "86197", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "file": "data/addgene_plasmids/86197.addgene-full.gb" }, @@ -22564,7 +28361,10 @@ "plasmid_name": "pENTR D-TOPO-C3_27", "sequence-type": "depositor-full", "addgene_id": "60270", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60270.depositor-full.gb" }, @@ -22573,7 +28373,10 @@ "plasmid_name": "pHAGE-RET-V648I", "sequence-type": "addgene-full", "addgene_id": "116671", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116671.addgene-full.gb" }, @@ -22582,7 +28385,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAP G116A", "sequence-type": "addgene-full", "addgene_id": "123098", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123098.addgene-full.gb" }, @@ -22591,7 +28397,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS1B", "sequence-type": "depositor-full", "addgene_id": "20239", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20239.depositor-full.gb" }, @@ -22600,7 +28409,10 @@ "plasmid_name": "MAC-tag-N", "sequence-type": "addgene-full", "addgene_id": "108078", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/108078.addgene-full.gb" }, @@ -22609,7 +28421,10 @@ "plasmid_name": "mEos3-dnRac1", "sequence-type": "addgene-full", "addgene_id": "92040", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1409667112", + "https://www.ncbi.nlm.nih.gov/pubmed/25561548" + ], "kit": null, "file": "data/addgene_plasmids/92040.addgene-full.gb" }, @@ -22618,7 +28433,10 @@ "plasmid_name": "pHAGE-OXA1L-L57F", "sequence-type": "addgene-full", "addgene_id": "116445", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116445.addgene-full.gb" }, @@ -22627,7 +28445,10 @@ "plasmid_name": "pDONR221 NLRP1 FIIND (F1079M-L1373) S1213A", "sequence-type": "addgene-full", "addgene_id": "166832", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166832.addgene-full.gb" }, @@ -22636,7 +28457,10 @@ "plasmid_name": "pHAGE-CDC42BPB__SYNJ2BP", "sequence-type": "addgene-full", "addgene_id": "116811", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116811.addgene-full.gb" }, @@ -22645,7 +28469,9 @@ "plasmid_name": "pFLIP42", "sequence-type": "depositor-full", "addgene_id": "65617", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65617.depositor-full.gb" }, @@ -22654,7 +28480,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-wt", "sequence-type": "depositor-full", "addgene_id": "46703", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46703.depositor-full.gb" }, @@ -22663,7 +28492,10 @@ "plasmid_name": "R989-X31-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) Q61L", "sequence-type": "addgene-full", "addgene_id": "159551", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159551.addgene-full.gb" }, @@ -22672,7 +28504,10 @@ "plasmid_name": "mKate2-P2A-APEX2-2xFYVE_hrs", "sequence-type": "depositor-full", "addgene_id": "67663", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67663.depositor-full.gb" }, @@ -22681,7 +28516,10 @@ "plasmid_name": "pENTR-L5-EGFP-L2", "sequence-type": "depositor-full", "addgene_id": "32593", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32593.depositor-full.gb" }, @@ -22690,7 +28528,10 @@ "plasmid_name": "pAG303GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14253", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -22702,7 +28543,10 @@ "plasmid_name": "pUCIDT-attL1-Human ABeta-attR5", "sequence-type": "addgene-full", "addgene_id": "160436", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.3856", + "https://www.ncbi.nlm.nih.gov/pubmed/33659494" + ], "kit": null, "file": "data/addgene_plasmids/160436.addgene-full.gb" }, @@ -22711,7 +28555,10 @@ "plasmid_name": "pINDUCER dCas9-TET1CDMut", "sequence-type": "addgene-full", "addgene_id": "101920", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-017-0002-y", + "https://www.ncbi.nlm.nih.gov/pubmed/29203910" + ], "kit": null, "file": "data/addgene_plasmids/101920.addgene-full.gb" }, @@ -22720,7 +28567,6 @@ "plasmid_name": "pLEX307-DPP4-G418", "sequence-type": "addgene-full", "addgene_id": "158453", - "references": [], "kit": null, "file": "data/addgene_plasmids/158453.addgene-full.gb" }, @@ -22729,7 +28575,10 @@ "plasmid_name": "pZmUBQ:AVRa1", "sequence-type": "addgene-full", "addgene_id": "132356", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0502-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31666804" + ], "kit": null, "file": "data/addgene_plasmids/132356.addgene-full.gb" }, @@ -22738,7 +28587,6 @@ "plasmid_name": "pLEX305_3xFLAG_RELA1", "sequence-type": "addgene-full", "addgene_id": "220324", - "references": [], "kit": null, "file": "data/addgene_plasmids/220324.addgene-full.gb" }, @@ -22747,7 +28595,10 @@ "plasmid_name": "pWZL Neo Myr Flag FGFR1", "sequence-type": "addgene-full", "addgene_id": "20486", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20486.addgene-full.gb" }, @@ -22756,7 +28607,10 @@ "plasmid_name": "pCAG/ATP11C-HA", "sequence-type": "addgene-full", "addgene_id": "209220", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209220.addgene-full.gb" }, @@ -22765,7 +28619,6 @@ "plasmid_name": "p663-UBC-PM-miniTurbo-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214454", - "references": [], "kit": null, "file": "data/addgene_plasmids/214454.addgene-full.gb" }, @@ -22774,7 +28627,10 @@ "plasmid_name": "pRU55", "sequence-type": "addgene-full", "addgene_id": "167684", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167684.addgene-full.gb" }, @@ -22783,7 +28639,10 @@ "plasmid_name": "pME tdTomato-CAAX", "sequence-type": "addgene-full", "addgene_id": "135204", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13967", + "https://www.ncbi.nlm.nih.gov/pubmed/25470057" + ], "kit": null, "file": "data/addgene_plasmids/135204.addgene-full.gb" }, @@ -22792,7 +28651,10 @@ "plasmid_name": "pEBTetBl-CLIP-\u03b1-tubulin", "sequence-type": "addgene-full", "addgene_id": "136840", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136840.addgene-full.gb" }, @@ -22801,7 +28663,9 @@ "plasmid_name": "pASZ-C-DM", "sequence-type": "addgene-full", "addgene_id": "111235", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25814554" + ], "kit": null, "file": "data/addgene_plasmids/111235.addgene-full.gb" }, @@ -22810,7 +28674,10 @@ "plasmid_name": "pECNUS_MP02", "sequence-type": "addgene-full", "addgene_id": "194351", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkad142", + "https://www.ncbi.nlm.nih.gov/pubmed/36919598" + ], "kit": null, "file": "data/addgene_plasmids/194351.addgene-full.gb" }, @@ -22819,7 +28686,10 @@ "plasmid_name": "pHAGE-ESR1-E247K", "sequence-type": "addgene-full", "addgene_id": "116367", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116367.addgene-full.gb" }, @@ -22828,7 +28698,10 @@ "plasmid_name": "TFORF3377", "sequence-type": "addgene-full", "addgene_id": "144853", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144853.addgene-full.gb" }, @@ -22837,7 +28710,10 @@ "plasmid_name": "pDONR221_SLC17A3", "sequence-type": "addgene-full", "addgene_id": "131912", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131912.addgene-full.gb" }, @@ -22846,7 +28722,10 @@ "plasmid_name": "MAC_N_COMMD6", "sequence-type": "addgene-full", "addgene_id": "209679", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209679.addgene-full.gb" }, @@ -22855,7 +28734,10 @@ "plasmid_name": "TFORF2931", "sequence-type": "addgene-full", "addgene_id": "144407", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144407.addgene-full.gb" }, @@ -22864,7 +28746,10 @@ "plasmid_name": "actc1b-CD44a-mKate2", "sequence-type": "addgene-full", "addgene_id": "109523", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109523.addgene-full.gb" }, @@ -22873,7 +28758,9 @@ "plasmid_name": "pMpGWB100", "sequence-type": "depositor-full", "addgene_id": "68062", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68062.depositor-full.gb" }, @@ -22882,7 +28769,10 @@ "plasmid_name": "pDONR221-SLC25A14_STOP", "sequence-type": "addgene-full", "addgene_id": "161216", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161216.addgene-full.gb" }, @@ -22891,7 +28781,10 @@ "plasmid_name": "pDEST-CMV-polysite", "sequence-type": "addgene-full", "addgene_id": "122843", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/122843.addgene-full.gb" }, @@ -22900,7 +28793,10 @@ "plasmid_name": "pDONR223_SNURF_p.M1I", "sequence-type": "addgene-full", "addgene_id": "81633", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -22912,7 +28808,10 @@ "plasmid_name": "pAG413GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14405", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -22924,7 +28823,10 @@ "plasmid_name": "pENTR-PKAKTRClover", "sequence-type": "depositor-full", "addgene_id": "59146", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59146.depositor-full.gb" }, @@ -22933,7 +28835,10 @@ "plasmid_name": "LIIc F 1-2 RNAi", "sequence-type": "depositor-full", "addgene_id": "54402", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54402.depositor-full.gb" }, @@ -22942,7 +28847,10 @@ "plasmid_name": "pAG305GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14162", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -22954,7 +28862,10 @@ "plasmid_name": "MAC-SARS-CoV-2 S", "sequence-type": "addgene-full", "addgene_id": "158371", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158371.addgene-full.gb" }, @@ -22963,7 +28874,10 @@ "plasmid_name": "pMXs-Sox2-IP", "sequence-type": "addgene-full", "addgene_id": "15919", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.07.024", + "https://www.ncbi.nlm.nih.gov/pubmed/16904174" + ], "kit": null, "file": "data/addgene_plasmids/15919.addgene-full.gb" }, @@ -22972,7 +28886,10 @@ "plasmid_name": "pDONR221_SLC22A8", "sequence-type": "addgene-full", "addgene_id": "131989", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131989.addgene-full.gb" }, @@ -22981,7 +28898,10 @@ "plasmid_name": "pEN_TT 3xFLAG-KPNB1", "sequence-type": "addgene-full", "addgene_id": "192301", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192301.addgene-full.gb" }, @@ -22990,7 +28910,10 @@ "plasmid_name": "actc1b-mKate2-rab8b", "sequence-type": "addgene-full", "addgene_id": "109658", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109658.addgene-full.gb" }, @@ -22999,7 +28922,10 @@ "plasmid_name": "pGP8GF-AtTIR1", "sequence-type": "addgene-full", "addgene_id": "188427", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188427.addgene-full.gb" }, @@ -23008,7 +28934,10 @@ "plasmid_name": "pDONR223_GPR156_p.R757L", "sequence-type": "addgene-full", "addgene_id": "81548", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23020,7 +28949,10 @@ "plasmid_name": "TFORF3072", "sequence-type": "addgene-full", "addgene_id": "144548", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144548.addgene-full.gb" }, @@ -23029,7 +28961,10 @@ "plasmid_name": "pDD382", "sequence-type": "addgene-full", "addgene_id": "91830", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "file": "data/addgene_plasmids/91830.addgene-full.gb" }, @@ -23038,7 +28973,10 @@ "plasmid_name": "AAEL006076 AstAR", "sequence-type": "addgene-full", "addgene_id": "115381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115381.addgene-full.gb" }, @@ -23047,7 +28985,10 @@ "plasmid_name": "pENTR-R4r-mCherry-R3r", "sequence-type": "depositor-full", "addgene_id": "32411", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32411.depositor-full.gb" }, @@ -23056,7 +28997,9 @@ "plasmid_name": "p3E-V5-mScarlet-I_SV40pA (JDW 968)", "sequence-type": "addgene-full", "addgene_id": "224529", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224529.addgene-full.gb" }, @@ -23065,7 +29008,6 @@ "plasmid_name": "R777-E178 Hs.PIK3R4-nostop", "sequence-type": "depositor-full", "addgene_id": "70462", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -23077,7 +29019,10 @@ "plasmid_name": "pDONR221-SLC5A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161359", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161359.addgene-full.gb" }, @@ -23086,7 +29031,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-irf2bpl C", "sequence-type": "addgene-full", "addgene_id": "89372", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89372.addgene-full.gb" }, @@ -23107,7 +29055,10 @@ "plasmid_name": "MAC3-N-GFP", "sequence-type": "addgene-full", "addgene_id": "222602", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "file": "data/addgene_plasmids/222602.addgene-full.gb" }, @@ -23116,7 +29067,10 @@ "plasmid_name": "KU901: pMVP (L5-L4) eCFP", "sequence-type": "addgene-full", "addgene_id": "121711", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121711.addgene-full.gb" }, @@ -23125,7 +29079,10 @@ "plasmid_name": "pDONR223_CETN3_WT", "sequence-type": "addgene-full", "addgene_id": "82961", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82961.addgene-full.gb" }, @@ -23134,7 +29091,10 @@ "plasmid_name": "pLVX-HA-UBE3A-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107349", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "file": "data/addgene_plasmids/107349.addgene-full.gb" }, @@ -23143,7 +29103,10 @@ "plasmid_name": "pHAGE-EGFR-A289D", "sequence-type": "addgene-full", "addgene_id": "116228", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116228.addgene-full.gb" }, @@ -23152,7 +29115,9 @@ "plasmid_name": "pDONR221-ECHS1", "sequence-type": "addgene-full", "addgene_id": "166170", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166170.addgene-full.gb" }, @@ -23161,7 +29126,10 @@ "plasmid_name": "TFORF3157", "sequence-type": "addgene-full", "addgene_id": "144633", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144633.addgene-full.gb" }, @@ -23170,7 +29138,10 @@ "plasmid_name": "p3E-rab5ab", "sequence-type": "addgene-full", "addgene_id": "109717", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109717.addgene-full.gb" }, @@ -23179,7 +29150,10 @@ "plasmid_name": "pDEST 566-PHL2", "sequence-type": "addgene-full", "addgene_id": "118676", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118676.addgene-full.gb" }, @@ -23188,7 +29162,10 @@ "plasmid_name": "pENTR221-IGFBP2-Clover", "sequence-type": "addgene-full", "addgene_id": "191007", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg1840", + "https://www.ncbi.nlm.nih.gov/pubmed/37436978" + ], "kit": null, "file": "data/addgene_plasmids/191007.addgene-full.gb" }, @@ -23197,7 +29174,10 @@ "plasmid_name": "pDONR223_IDH2_p.G137E", "sequence-type": "addgene-full", "addgene_id": "81407", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23209,7 +29189,10 @@ "plasmid_name": "pENTR223-luciferase", "sequence-type": "addgene-full", "addgene_id": "198590", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198590.addgene-full.gb" }, @@ -23218,7 +29201,10 @@ "plasmid_name": "p7133 pHAGE-P-CMVt-N-HA-GAW-PRKAR2B", "sequence-type": "addgene-full", "addgene_id": "100160", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100160.addgene-full.gb" }, @@ -23227,7 +29213,10 @@ "plasmid_name": "pDONR221-rap1-K43-117-118R", "sequence-type": "addgene-full", "addgene_id": "84565", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.185793.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25800674" + ], "kit": null, "file": "data/addgene_plasmids/84565.addgene-full.gb" }, @@ -23236,7 +29225,10 @@ "plasmid_name": "pDONR223_PIK3IP1_WT", "sequence-type": "addgene-full", "addgene_id": "81853", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23248,7 +29240,10 @@ "plasmid_name": "pEntry_HCoV-NL63-Membrane", "sequence-type": "depositor-full", "addgene_id": "168925", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168925.depositor-full.gb" }, @@ -23257,7 +29252,10 @@ "plasmid_name": "pCLXEBR-pTF-hM3Dq", "sequence-type": "addgene-full", "addgene_id": "114283", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "file": "data/addgene_plasmids/114283.addgene-full.gb" }, @@ -23266,7 +29264,9 @@ "plasmid_name": "pPB-cT3G-cERP2-3xFLAG-SMAD1-active", "sequence-type": "addgene-full", "addgene_id": "222579", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222579.addgene-full.gb" }, @@ -23275,7 +29275,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir16-1.2", "sequence-type": "depositor-full", "addgene_id": "46681", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46681.depositor-full.gb" }, @@ -23284,7 +29287,10 @@ "plasmid_name": "pHAGE-BRAF-G469A", "sequence-type": "addgene-full", "addgene_id": "116153", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116153.addgene-full.gb" }, @@ -23293,7 +29299,10 @@ "plasmid_name": "sox10:PDGFRA mutant", "sequence-type": "depositor-full", "addgene_id": "98697", - "references": [], + "references": [ + "https://doi.org/10.1038/onc.2016.269", + "https://www.ncbi.nlm.nih.gov/pubmed/27477693" + ], "kit": null, "file": "data/addgene_plasmids/98697.depositor-full.gb" }, @@ -23302,7 +29311,10 @@ "plasmid_name": "pDONR223_BRAF_p.H574N", "sequence-type": "addgene-full", "addgene_id": "82813", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82813.addgene-full.gb" }, @@ -23311,7 +29323,10 @@ "plasmid_name": "pCAGImC_V5-CSNK1A1", "sequence-type": "depositor-full", "addgene_id": "92014", - "references": [], + "references": [ + "https://doi.org/10.1038/nature21025", + "https://www.ncbi.nlm.nih.gov/pubmed/28114302" + ], "kit": null, "file": "data/addgene_plasmids/92014.depositor-full.gb" }, @@ -23320,7 +29335,10 @@ "plasmid_name": "PB-TA-ERP2", "sequence-type": "addgene-full", "addgene_id": "80477", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "file": "data/addgene_plasmids/80477.addgene-full.gb" }, @@ -23329,7 +29347,10 @@ "plasmid_name": "pcDNA3.2/v5-DEST hGlut4", "sequence-type": "addgene-full", "addgene_id": "18087", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.09-146472", + "https://www.ncbi.nlm.nih.gov/pubmed/20354141" + ], "kit": null, "file": "data/addgene_plasmids/18087.addgene-full.gb" }, @@ -23338,7 +29359,10 @@ "plasmid_name": "pGWB-cLUC", "sequence-type": "addgene-full", "addgene_id": "174051", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1008933", + "https://www.ncbi.nlm.nih.gov/pubmed/32976518" + ], "kit": null, "file": "data/addgene_plasmids/174051.addgene-full.gb" }, @@ -23347,7 +29371,6 @@ "plasmid_name": "Human-Dysferlin-Original", "sequence-type": "depositor-full", "addgene_id": "60216", - "references": [], "kit": null, "file": "data/addgene_plasmids/60216.depositor-full.gb" }, @@ -23356,7 +29379,10 @@ "plasmid_name": "pGL3-MTS-G3635A-R16-FZY2-S100N-UGI-Puro", "sequence-type": "addgene-full", "addgene_id": "209644", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-42359-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37857619" + ], "kit": null, "file": "data/addgene_plasmids/209644.addgene-full.gb" }, @@ -23365,7 +29391,10 @@ "plasmid_name": "PPIE_pLX307", "sequence-type": "addgene-full", "addgene_id": "98361", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98361.addgene-full.gb" }, @@ -23374,7 +29403,10 @@ "plasmid_name": "pLenti-PGK-Venus-Akaluc (neo)", "sequence-type": "addgene-full", "addgene_id": "124701", - "references": [], + "references": [ + "https://doi.org/10.1093/noajnl/vdaa134", + "https://www.ncbi.nlm.nih.gov/pubmed/33241215" + ], "kit": null, "file": "data/addgene_plasmids/124701.addgene-full.gb" }, @@ -23383,7 +29415,10 @@ "plasmid_name": "pAPi", "sequence-type": "addgene-full", "addgene_id": "127548", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.20.00865", + "https://www.ncbi.nlm.nih.gov/pubmed/32764132" + ], "kit": null, "file": "data/addgene_plasmids/127548.addgene-full.gb" }, @@ -23392,7 +29427,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.K57T", "sequence-type": "addgene-full", "addgene_id": "81695", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23404,7 +29442,10 @@ "plasmid_name": "pDONR223_IDH1_WT", "sequence-type": "addgene-full", "addgene_id": "81921", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23416,7 +29457,10 @@ "plasmid_name": "5'-3xFLAG Med24-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212060", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212060.addgene-full.gb" }, @@ -23425,7 +29469,10 @@ "plasmid_name": "pMpGE011", "sequence-type": "depositor-full", "addgene_id": "71537", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0205117", + "https://www.ncbi.nlm.nih.gov/pubmed/30379827" + ], "kit": null, "file": "data/addgene_plasmids/71537.depositor-full.gb" }, @@ -23434,7 +29481,10 @@ "plasmid_name": "pAdCMV/V5-DEST-S727D-STAT3-3xFlag", "sequence-type": "addgene-full", "addgene_id": "99263", - "references": [], + "references": [ + "https://doi.org/10.1152/ajpcell.00235.2017", + "https://www.ncbi.nlm.nih.gov/pubmed/29351406" + ], "kit": null, "file": "data/addgene_plasmids/99263.addgene-full.gb" }, @@ -23443,7 +29493,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp1", "sequence-type": "addgene-full", "addgene_id": "168893", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168893.addgene-full.gb" }, @@ -23452,7 +29505,10 @@ "plasmid_name": "p3E-Clta", "sequence-type": "addgene-full", "addgene_id": "109585", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109585.addgene-full.gb" }, @@ -23461,7 +29517,10 @@ "plasmid_name": "p3E-rab11bb", "sequence-type": "addgene-full", "addgene_id": "109665", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109665.addgene-full.gb" }, @@ -23470,7 +29529,10 @@ "plasmid_name": "TFORF3265", "sequence-type": "addgene-full", "addgene_id": "144741", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144741.addgene-full.gb" }, @@ -23479,7 +29541,6 @@ "plasmid_name": "pHAGE mCherry-Rab11A", "sequence-type": "addgene-full", "addgene_id": "228035", - "references": [], "kit": null, "file": "data/addgene_plasmids/228035.addgene-full.gb" }, @@ -23488,7 +29549,10 @@ "plasmid_name": "pLD-puro-Cc-CR-PARK7V51G-VA", "sequence-type": "addgene-full", "addgene_id": "115188", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115188.addgene-full.gb" }, @@ -23497,7 +29561,10 @@ "plasmid_name": "pDONR223_MAX_WT", "sequence-type": "addgene-full", "addgene_id": "82888", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82888.addgene-full.gb" }, @@ -23506,7 +29573,10 @@ "plasmid_name": "pDONR221-SLC26A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161150", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161150.addgene-full.gb" }, @@ -23515,7 +29585,10 @@ "plasmid_name": "sgTrack-Gateway", "sequence-type": "addgene-full", "addgene_id": "114011", - "references": [], + "references": [ + "https://doi.org/10.1038/s43018-020-0040-8", + "https://www.ncbi.nlm.nih.gov/pubmed/33345196" + ], "kit": null, "file": "data/addgene_plasmids/114011.addgene-full.gb" }, @@ -23524,7 +29597,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_UBA-mut", "sequence-type": "addgene-full", "addgene_id": "187146", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187146.addgene-full.gb" }, @@ -23533,7 +29609,10 @@ "plasmid_name": "pENTR-R4R3-mRuby-N", "sequence-type": "depositor-full", "addgene_id": "113752", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -23545,7 +29624,10 @@ "plasmid_name": "pDONR223_WBSCR17_p.E289K", "sequence-type": "addgene-full", "addgene_id": "81575", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23557,7 +29639,6 @@ "plasmid_name": "R777-E302 Hs.RPTOR-nostop", "sequence-type": "depositor-full", "addgene_id": "70586", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -23569,7 +29650,10 @@ "plasmid_name": "pEN41A-T10M", "sequence-type": "depositor-full", "addgene_id": "27365", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "file": "data/addgene_plasmids/27365.depositor-full.gb" }, @@ -23578,7 +29662,10 @@ "plasmid_name": "pEntry_HCoV-OC43-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168947", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168947.addgene-full.gb" }, @@ -23587,7 +29674,10 @@ "plasmid_name": "pAG306GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14235", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -23599,7 +29689,10 @@ "plasmid_name": "TFORF3099", "sequence-type": "addgene-full", "addgene_id": "144575", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144575.addgene-full.gb" }, @@ -23608,7 +29701,9 @@ "plasmid_name": "pMpGWB324", "sequence-type": "depositor-full", "addgene_id": "68652", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68652.depositor-full.gb" }, @@ -23617,7 +29712,10 @@ "plasmid_name": "pDONR223_CDK4_WT", "sequence-type": "addgene-full", "addgene_id": "81741", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23641,7 +29739,10 @@ "plasmid_name": "p5E-slc1a3b", "sequence-type": "addgene-full", "addgene_id": "170205", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-020-0703-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32895565" + ], "kit": null, "file": "data/addgene_plasmids/170205.addgene-full.gb" }, @@ -23650,7 +29751,10 @@ "plasmid_name": "pLgw Cbx1-V5-EcoDam", "sequence-type": "depositor-full", "addgene_id": "59211", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "file": "data/addgene_plasmids/59211.depositor-full.gb" }, @@ -23659,7 +29763,9 @@ "plasmid_name": "pME-3xNLS-(G2SG2)2-Cre (JDW 1149)", "sequence-type": "addgene-full", "addgene_id": "224514", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224514.addgene-full.gb" }, @@ -23668,7 +29774,10 @@ "plasmid_name": "pDONR221-MPC1L_STOP", "sequence-type": "addgene-full", "addgene_id": "161084", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161084.addgene-full.gb" }, @@ -23677,7 +29786,6 @@ "plasmid_name": "pGEX6P1-DEST", "sequence-type": "addgene-full", "addgene_id": "119749", - "references": [], "kit": null, "file": "data/addgene_plasmids/119749.addgene-full.gb" }, @@ -23686,7 +29794,10 @@ "plasmid_name": "pDONR223_NKX2-1_DelCTerm_1-223AA", "sequence-type": "addgene-full", "addgene_id": "221476", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221476.addgene-full.gb" }, @@ -23695,7 +29806,10 @@ "plasmid_name": "pQLinkHD", "sequence-type": "depositor-full", "addgene_id": "13668", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkm067", + "https://www.ncbi.nlm.nih.gov/pubmed/17311810" + ], "kit": null, "file": "data/addgene_plasmids/13668.depositor-full.gb" }, @@ -23704,7 +29818,10 @@ "plasmid_name": "TFORF3219", "sequence-type": "addgene-full", "addgene_id": "144695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144695.addgene-full.gb" }, @@ -23713,7 +29830,10 @@ "plasmid_name": "TFORF3445", "sequence-type": "addgene-full", "addgene_id": "144921", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144921.addgene-full.gb" }, @@ -23722,7 +29842,10 @@ "plasmid_name": "plenti-UbcP-FLAG-CRBN-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107374", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107374.addgene-full.gb" }, @@ -23731,7 +29854,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDKL4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158178", - "references": [], "kit": null, "file": "data/addgene_plasmids/158178.addgene-full.gb" }, @@ -23740,7 +29862,10 @@ "plasmid_name": "CMYA5T2/pENTR3C", "sequence-type": "addgene-full", "addgene_id": "97409", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "file": "data/addgene_plasmids/97409.addgene-full.gb" }, @@ -23749,7 +29874,10 @@ "plasmid_name": "JN511: pMVP (L3-L2) pA; EF1a::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121803", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121803.addgene-full.gb" }, @@ -23758,7 +29886,9 @@ "plasmid_name": "pPB-cT3G-cERP2-RBM46", "sequence-type": "addgene-full", "addgene_id": "222544", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222544.addgene-full.gb" }, @@ -23767,7 +29897,6 @@ "plasmid_name": "p667-UBC-PXK-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189898", - "references": [], "kit": null, "file": "data/addgene_plasmids/189898.addgene-full.gb" }, @@ -23776,7 +29905,10 @@ "plasmid_name": "pLX307/PTPN11", "sequence-type": "addgene-full", "addgene_id": "140941", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0209", + "https://www.ncbi.nlm.nih.gov/pubmed/31771968" + ], "kit": null, "file": "data/addgene_plasmids/140941.addgene-full.gb" }, @@ -23785,7 +29917,10 @@ "plasmid_name": "A1-LCD+23G-23S+7F-7Y", "sequence-type": "addgene-full", "addgene_id": "178690", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178690.addgene-full.gb" }, @@ -23794,7 +29929,9 @@ "plasmid_name": "p5E-hPGK", "sequence-type": "depositor-full", "addgene_id": "82579", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82579.depositor-full.gb" }, @@ -23803,7 +29940,10 @@ "plasmid_name": "pYZ221", "sequence-type": "addgene-full", "addgene_id": "132952", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkaa329", + "https://www.ncbi.nlm.nih.gov/pubmed/32374858" + ], "kit": null, "file": "data/addgene_plasmids/132952.addgene-full.gb" }, @@ -23812,7 +29952,9 @@ "plasmid_name": "p3E-GFPmem no-pA", "sequence-type": "depositor-full", "addgene_id": "80817", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80817.depositor-full.gb" }, @@ -23821,7 +29963,6 @@ "plasmid_name": "pLIX-REST", "sequence-type": "addgene-full", "addgene_id": "91896", - "references": [], "kit": null, "file": "data/addgene_plasmids/91896.addgene-full.gb" }, @@ -23830,7 +29971,10 @@ "plasmid_name": "pENTR-NLS-actin-R62D", "sequence-type": "addgene-full", "addgene_id": "118381", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118381.addgene-full.gb" }, @@ -23839,7 +29983,10 @@ "plasmid_name": "pEntr_PE2", "sequence-type": "addgene-full", "addgene_id": "149548", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2021996118", + "https://www.ncbi.nlm.nih.gov/pubmed/33443210" + ], "kit": null, "file": "data/addgene_plasmids/149548.addgene-full.gb" }, @@ -23848,7 +29995,10 @@ "plasmid_name": "pHAGE-FLT1", "sequence-type": "addgene-full", "addgene_id": "116744", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116744.addgene-full.gb" }, @@ -23857,7 +30007,10 @@ "plasmid_name": "pAG303GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14301", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -23869,7 +30022,10 @@ "plasmid_name": "pGWB425", "sequence-type": "depositor-full", "addgene_id": "74819", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74819.depositor-full.gb" }, @@ -23878,7 +30034,10 @@ "plasmid_name": "pYPQ290-D570A", "sequence-type": "addgene-full", "addgene_id": "129673", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129673.addgene-full.gb" }, @@ -23887,7 +30046,10 @@ "plasmid_name": "pDONR223_TBL1XR1_WT", "sequence-type": "addgene-full", "addgene_id": "82059", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -23899,7 +30061,6 @@ "plasmid_name": "IDG_GPR89A_OE_1", "sequence-type": "addgene-full", "addgene_id": "161635", - "references": [], "kit": null, "file": "data/addgene_plasmids/161635.addgene-full.gb" }, @@ -23908,7 +30069,10 @@ "plasmid_name": "pDONR223-NTRK3", "sequence-type": "addgene-full", "addgene_id": "23901", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -23920,7 +30084,10 @@ "plasmid_name": "pTW328", "sequence-type": "addgene-full", "addgene_id": "115959", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115959.addgene-full.gb" }, @@ -23929,7 +30096,10 @@ "plasmid_name": "SWEET11:SWEET11-2A-GFP-GUS", "sequence-type": "addgene-full", "addgene_id": "172484", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koaa060", + "https://www.ncbi.nlm.nih.gov/pubmed/33955487" + ], "kit": null, "file": "data/addgene_plasmids/172484.addgene-full.gb" }, @@ -23938,7 +30108,6 @@ "plasmid_name": "R777-E044 Hs.DUSP6-nostop", "sequence-type": "depositor-full", "addgene_id": "70328", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -23950,7 +30119,10 @@ "plasmid_name": "pLEX307-mFzd6", "sequence-type": "addgene-full", "addgene_id": "102868", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "file": "data/addgene_plasmids/102868.addgene-full.gb" }, @@ -23959,7 +30131,6 @@ "plasmid_name": "pCDNA3-hTLR4-VenusFlag", "sequence-type": "addgene-full", "addgene_id": "197640", - "references": [], "kit": null, "file": "data/addgene_plasmids/197640.addgene-full.gb" }, @@ -23968,7 +30139,10 @@ "plasmid_name": "HDR-HaloPOLQ", "sequence-type": "addgene-full", "addgene_id": "211637", - "references": [], + "references": [ + "https://doi.org/10.1126/science.adh3694", + "https://www.ncbi.nlm.nih.gov/pubmed/37440612" + ], "kit": null, "file": "data/addgene_plasmids/211637.addgene-full.gb" }, @@ -23977,7 +30151,10 @@ "plasmid_name": "pDL201", "sequence-type": "addgene-full", "addgene_id": "175919", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175919.addgene-full.gb" }, @@ -23986,7 +30163,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-1", "sequence-type": "depositor-full", "addgene_id": "46651", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46651.depositor-full.gb" }, @@ -23995,7 +30175,10 @@ "plasmid_name": "pDONR223_MAP3K14_WT", "sequence-type": "addgene-full", "addgene_id": "82322", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82322.addgene-full.gb" }, @@ -24004,7 +30187,6 @@ "plasmid_name": "pDONR221-get1", "sequence-type": "addgene-full", "addgene_id": "192722", - "references": [], "kit": null, "file": "data/addgene_plasmids/192722.addgene-full.gb" }, @@ -24013,7 +30195,10 @@ "plasmid_name": "pDONR221_SLC39A5", "sequence-type": "addgene-full", "addgene_id": "132057", - "references": [], + "references": [ + "https://doi.org/10.1007/s10534-022-00474-6", + "https://www.ncbi.nlm.nih.gov/pubmed/36454509" + ], "kit": null, "file": "data/addgene_plasmids/132057.addgene-full.gb" }, @@ -24022,7 +30207,10 @@ "plasmid_name": "pPB-cT3G-cERP2-GATA4", "sequence-type": "addgene-full", "addgene_id": "192896", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192896.addgene-full.gb" }, @@ -24031,7 +30219,10 @@ "plasmid_name": "p8321 pDONR ATG-YAP1 S127A-Stop", "sequence-type": "addgene-full", "addgene_id": "184525", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184525.addgene-full.gb" }, @@ -24040,7 +30231,10 @@ "plasmid_name": "pDONR223_ERRFI1_WT", "sequence-type": "addgene-full", "addgene_id": "82116", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82116.addgene-full.gb" }, @@ -24049,7 +30243,10 @@ "plasmid_name": "SOD1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176964", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176964.addgene-full.gb" }, @@ -24058,7 +30255,10 @@ "plasmid_name": "pGWB515", "sequence-type": "depositor-full", "addgene_id": "74857", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74857.depositor-full.gb" }, @@ -24067,7 +30267,10 @@ "plasmid_name": "pDONR221_SLC25A19", "sequence-type": "addgene-full", "addgene_id": "132263", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132263.addgene-full.gb" }, @@ -24076,7 +30279,10 @@ "plasmid_name": "GFP-BRD7", "sequence-type": "addgene-full", "addgene_id": "65379", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65379.addgene-full.gb" }, @@ -24085,7 +30291,10 @@ "plasmid_name": "pcDNA5FRT/TO-AIRAPL-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113489", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113489.addgene-full.gb" }, @@ -24094,7 +30303,10 @@ "plasmid_name": "pSGE_714_S2-1-gcm_dCP", "sequence-type": "depositor-full", "addgene_id": "71164", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71164.depositor-full.gb" }, @@ -24103,7 +30315,10 @@ "plasmid_name": "pDONR221_SLC6A13", "sequence-type": "addgene-full", "addgene_id": "132183", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132183.addgene-full.gb" }, @@ -24112,7 +30327,9 @@ "plasmid_name": "pLX317-RBFOX1", "sequence-type": "addgene-full", "addgene_id": "115442", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "file": "data/addgene_plasmids/115442.addgene-full.gb" }, @@ -24121,7 +30338,6 @@ "plasmid_name": "pLIX403-iRFP-ccdB-Puro", "sequence-type": "addgene-full", "addgene_id": "158566", - "references": [], "kit": null, "file": "data/addgene_plasmids/158566.addgene-full.gb" }, @@ -24130,7 +30346,10 @@ "plasmid_name": "pENTR L3-4XmCherry-HA-L2", "sequence-type": "depositor-full", "addgene_id": "32315", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32315.depositor-full.gb" }, @@ -24139,7 +30358,10 @@ "plasmid_name": "pENTR-L1-PGK-TKBsd-L2", "sequence-type": "addgene-full", "addgene_id": "141009", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141009.addgene-full.gb" }, @@ -24148,7 +30370,10 @@ "plasmid_name": "pENTR223-LF2", "sequence-type": "addgene-full", "addgene_id": "195810", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195810.addgene-full.gb" }, @@ -24157,7 +30382,6 @@ "plasmid_name": "R777-E082 Hs.EXOC8-nostop", "sequence-type": "depositor-full", "addgene_id": "70366", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -24169,7 +30393,10 @@ "plasmid_name": "Flag-HA-USP43", "sequence-type": "addgene-full", "addgene_id": "22583", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22583.addgene-full.gb" }, @@ -24178,7 +30405,6 @@ "plasmid_name": "pLenti6.2-ccdB-Firefly", "sequence-type": "addgene-full", "addgene_id": "87074", - "references": [], "kit": null, "file": "data/addgene_plasmids/87074.addgene-full.gb" }, @@ -24187,7 +30413,10 @@ "plasmid_name": "C514-E67: attB5r-RU5u-Strep2x2-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162967", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -24199,7 +30428,10 @@ "plasmid_name": "pAC150-RFP-EGFP-LGALS3 R186S", "sequence-type": "addgene-full", "addgene_id": "175779", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175779.addgene-full.gb" }, @@ -24208,7 +30440,10 @@ "plasmid_name": "pENTR_L1-miniTurbo-YFP-NLS-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127362", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127362.addgene-full.gb" }, @@ -24217,7 +30452,10 @@ "plasmid_name": "MSCVhyg-HA-FLAG_Ubc9_C93A", "sequence-type": "addgene-full", "addgene_id": "164937", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "file": "data/addgene_plasmids/164937.addgene-full.gb" }, @@ -24226,7 +30464,10 @@ "plasmid_name": "pT2-cryR;dusp5CE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90145", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90145.addgene-full.gb" }, @@ -24235,7 +30476,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR", "sequence-type": "depositor-full", "addgene_id": "65091", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65091.depositor-full.gb" }, @@ -24256,7 +30500,10 @@ "plasmid_name": "pTransposon.CAG.CasRX-P2A-Blast", "sequence-type": "addgene-full", "addgene_id": "212965", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-024-02190-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38409225" + ], "kit": null, "file": "data/addgene_plasmids/212965.addgene-full.gb" }, @@ -24265,7 +30512,10 @@ "plasmid_name": "BAP1", "sequence-type": "addgene-full", "addgene_id": "81024", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms8307", + "https://www.ncbi.nlm.nih.gov/pubmed/26095772" + ], "kit": null, "file": "data/addgene_plasmids/81024.addgene-full.gb" }, @@ -24274,7 +30524,10 @@ "plasmid_name": "pEAHISPA4631", "sequence-type": "addgene-full", "addgene_id": "97017", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97017.addgene-full.gb" }, @@ -24283,7 +30536,10 @@ "plasmid_name": "pInducer20-Blast", "sequence-type": "addgene-full", "addgene_id": "109334", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.30473", + "https://www.ncbi.nlm.nih.gov/pubmed/29148972" + ], "kit": null, "file": "data/addgene_plasmids/109334.addgene-full.gb" }, @@ -24292,7 +30548,10 @@ "plasmid_name": "pDONR223 LC3C G126", "sequence-type": "addgene-full", "addgene_id": "123079", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123079.addgene-full.gb" }, @@ -24301,7 +30560,10 @@ "plasmid_name": "pDONR221_SLC38A5", "sequence-type": "addgene-full", "addgene_id": "132118", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132118.addgene-full.gb" }, @@ -24310,7 +30572,10 @@ "plasmid_name": "pBoPyV2a-S22", "sequence-type": "depositor-full", "addgene_id": "62356", - "references": [], + "references": [ + "https://doi.org/10.1099/vir.0.000033", + "https://www.ncbi.nlm.nih.gov/pubmed/25568187" + ], "kit": null, "file": "data/addgene_plasmids/62356.depositor-full.gb" }, @@ -24319,7 +30584,10 @@ "plasmid_name": "LIIalpha F 2-3", "sequence-type": "depositor-full", "addgene_id": "54348", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54348.depositor-full.gb" }, @@ -24328,7 +30596,10 @@ "plasmid_name": "pHAGE-PIK3CD-G971R", "sequence-type": "addgene-full", "addgene_id": "116570", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116570.addgene-full.gb" }, @@ -24337,7 +30608,10 @@ "plasmid_name": "pDONR223-DYRK1B", "sequence-type": "addgene-full", "addgene_id": "23761", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -24349,7 +30623,10 @@ "plasmid_name": "pLV CMV-TERRA", "sequence-type": "depositor-full", "addgene_id": "111375", - "references": [], + "references": [ + "https://doi.org/10.3390/genes7080046", + "https://www.ncbi.nlm.nih.gov/pubmed/27537914" + ], "kit": null, "file": "data/addgene_plasmids/111375.depositor-full.gb" }, @@ -24358,7 +30635,10 @@ "plasmid_name": "pHAGE-PTCH1", "sequence-type": "addgene-full", "addgene_id": "116779", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116779.addgene-full.gb" }, @@ -24367,7 +30647,6 @@ "plasmid_name": "R777-E272 Hs.RB1-nostop", "sequence-type": "depositor-full", "addgene_id": "70556", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -24379,7 +30658,9 @@ "plasmid_name": "pENTR4 CDS A. thaliana PHOT1", "sequence-type": "addgene-full", "addgene_id": "209187", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.09.25.558804" + ], "kit": null, "file": "data/addgene_plasmids/209187.addgene-full.gb" }, @@ -24388,7 +30669,10 @@ "plasmid_name": "pGGEV_5_Linker", "sequence-type": "depositor-full", "addgene_id": "49285", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -24400,7 +30684,9 @@ "plasmid_name": "pMpGWB417", "sequence-type": "depositor-full", "addgene_id": "68682", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68682.depositor-full.gb" }, @@ -24409,7 +30695,10 @@ "plasmid_name": "764 pME nls-mApple", "sequence-type": "addgene-full", "addgene_id": "195962", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195962.addgene-full.gb" }, @@ -24418,7 +30707,6 @@ "plasmid_name": "p667-UBC-CDK12-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135243", - "references": [], "kit": null, "file": "data/addgene_plasmids/135243.addgene-full.gb" }, @@ -24427,7 +30715,10 @@ "plasmid_name": "cARA12-mRFP", "sequence-type": "addgene-full", "addgene_id": "181961", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.360", + "https://www.ncbi.nlm.nih.gov/pubmed/34877448" + ], "kit": null, "file": "data/addgene_plasmids/181961.addgene-full.gb" }, @@ -24436,7 +30727,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-UD-S32", "sequence-type": "addgene-full", "addgene_id": "140302", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140302.addgene-full.gb" }, @@ -24445,7 +30739,10 @@ "plasmid_name": "pSC31", "sequence-type": "addgene-full", "addgene_id": "104805", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104805.addgene-full.gb" }, @@ -24454,7 +30751,10 @@ "plasmid_name": "pJB554", "sequence-type": "addgene-full", "addgene_id": "115964", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115964.addgene-full.gb" }, @@ -24463,7 +30763,6 @@ "plasmid_name": "pENTR-rtTA3G", "sequence-type": "addgene-full", "addgene_id": "139556", - "references": [], "kit": null, "file": "data/addgene_plasmids/139556.addgene-full.gb" }, @@ -24472,7 +30771,10 @@ "plasmid_name": "pHAGE-PIK3CA-H1047L", "sequence-type": "addgene-full", "addgene_id": "116499", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116499.addgene-full.gb" }, @@ -24481,7 +30783,6 @@ "plasmid_name": "pSLIK DNM1L-V5 neo", "sequence-type": "addgene-full", "addgene_id": "220363", - "references": [], "kit": null, "file": "data/addgene_plasmids/220363.addgene-full.gb" }, @@ -24490,7 +30791,10 @@ "plasmid_name": "pDONR221-SFXN1", "sequence-type": "addgene-full", "addgene_id": "132311", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132311.addgene-full.gb" }, @@ -24499,7 +30803,10 @@ "plasmid_name": "MAC-TMPRSS4", "sequence-type": "addgene-full", "addgene_id": "172422", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172422.addgene-full.gb" }, @@ -24508,7 +30815,6 @@ "plasmid_name": "IDG_KCNN1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161693", - "references": [], "kit": null, "file": "data/addgene_plasmids/161693.addgene-full.gb" }, @@ -24517,7 +30823,6 @@ "plasmid_name": "pX458-Dual-Guide-Donor-Cas9-H2B-mCherry", "sequence-type": "addgene-full", "addgene_id": "175570", - "references": [], "kit": null, "file": "data/addgene_plasmids/175570.addgene-full.gb" }, @@ -24526,7 +30831,6 @@ "plasmid_name": "pENTR3cDual-Wnk", "sequence-type": "addgene-full", "addgene_id": "203976", - "references": [], "kit": null, "file": "data/addgene_plasmids/203976.addgene-full.gb" }, @@ -24535,7 +30839,10 @@ "plasmid_name": "pLX317 TEAD2", "sequence-type": "addgene-full", "addgene_id": "193686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193686.addgene-full.gb" }, @@ -24544,7 +30851,10 @@ "plasmid_name": "pDL202", "sequence-type": "addgene-full", "addgene_id": "175924", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175924.addgene-full.gb" }, @@ -24553,7 +30863,6 @@ "plasmid_name": "pDest eGFP MBNL1 42 kDa", "sequence-type": "depositor-full", "addgene_id": "61277", - "references": [], "kit": null, "file": "data/addgene_plasmids/61277.depositor-full.gb" }, @@ -24562,7 +30871,6 @@ "plasmid_name": "MERS Mpro - His6-SUMO with autoprocessing - MSAVMQ/SGLVKM---MGVVMQ/SGVRKVTYGTAHWL", "sequence-type": "addgene-full", "addgene_id": "204790", - "references": [], "kit": null, "file": "data/addgene_plasmids/204790.addgene-full.gb" }, @@ -24571,7 +30879,10 @@ "plasmid_name": "pMLS252", "sequence-type": "depositor-full", "addgene_id": "73720", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.184275", + "https://www.ncbi.nlm.nih.gov/pubmed/26837755" + ], "kit": null, "file": "data/addgene_plasmids/73720.depositor-full.gb" }, @@ -24580,7 +30891,10 @@ "plasmid_name": "pDONR221 Nog2", "sequence-type": "depositor-full", "addgene_id": "63764", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63764.depositor-full.gb" }, @@ -24589,7 +30903,10 @@ "plasmid_name": "pSS02:cyt-Peredox-mCherry_DS", "sequence-type": "addgene-full", "addgene_id": "161747", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.20.00241", + "https://www.ncbi.nlm.nih.gov/pubmed/32796121" + ], "kit": null, "file": "data/addgene_plasmids/161747.addgene-full.gb" }, @@ -24598,7 +30915,6 @@ "plasmid_name": "R777-E234 Hs.RASAL1-nostop", "sequence-type": "depositor-full", "addgene_id": "70518", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -24610,7 +30926,10 @@ "plasmid_name": "pInducer 21-3xFlag-hMEFV-\u0394PLD", "sequence-type": "addgene-full", "addgene_id": "195479", - "references": [], + "references": [ + "https://doi.org/10.1038/s41419-023-05745-9", + "https://www.ncbi.nlm.nih.gov/pubmed/36966139" + ], "kit": null, "file": "data/addgene_plasmids/195479.addgene-full.gb" }, @@ -24619,7 +30938,10 @@ "plasmid_name": "pCSJ392", "sequence-type": "addgene-full", "addgene_id": "159722", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1908304116", + "https://www.ncbi.nlm.nih.gov/pubmed/31337681" + ], "kit": null, "file": "data/addgene_plasmids/159722.addgene-full.gb" }, @@ -24628,7 +30950,10 @@ "plasmid_name": "MAC_C_FGFR2", "sequence-type": "addgene-full", "addgene_id": "187751", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187751.addgene-full.gb" }, @@ -24637,7 +30962,10 @@ "plasmid_name": "pDONR223_CYLC2_p.R71C", "sequence-type": "addgene-full", "addgene_id": "81362", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -24649,7 +30977,10 @@ "plasmid_name": "pENTR-R4R3-3xmRuby-N", "sequence-type": "addgene-full", "addgene_id": "113754", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -24661,7 +30992,10 @@ "plasmid_name": "pLCS107", "sequence-type": "addgene-full", "addgene_id": "209328", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209328.addgene-full.gb" }, @@ -24670,7 +31004,10 @@ "plasmid_name": "MAC3-tag-C", "sequence-type": "addgene-full", "addgene_id": "185481", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/185481.addgene-full.gb" }, @@ -24679,7 +31016,10 @@ "plasmid_name": "NCH1exp", "sequence-type": "addgene-full", "addgene_id": "131017", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "file": "data/addgene_plasmids/131017.addgene-full.gb" }, @@ -24688,7 +31028,10 @@ "plasmid_name": "pHAGE-PTEN-V166Sfs*14", "sequence-type": "addgene-full", "addgene_id": "116636", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116636.addgene-full.gb" }, @@ -24697,7 +31040,10 @@ "plasmid_name": "pENTR-R4-H1-BsmBI-L2", "sequence-type": "addgene-full", "addgene_id": "141034", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141034.addgene-full.gb" }, @@ -24706,7 +31052,10 @@ "plasmid_name": "GFP-BLOS1", "sequence-type": "addgene-full", "addgene_id": "164625", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164625.addgene-full.gb" }, @@ -24715,7 +31064,10 @@ "plasmid_name": "pENTR223-BGLF3", "sequence-type": "addgene-full", "addgene_id": "195799", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195799.addgene-full.gb" }, @@ -24724,7 +31076,10 @@ "plasmid_name": "pDONRCBX", "sequence-type": "depositor-full", "addgene_id": "29634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.fgb.2007.11.001", + "https://www.ncbi.nlm.nih.gov/pubmed/18248826" + ], "kit": null, "file": "data/addgene_plasmids/29634.depositor-full.gb" }, @@ -24733,7 +31088,10 @@ "plasmid_name": "pEnt L1L3 rtTA-3", "sequence-type": "depositor-full", "addgene_id": "27106", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "file": "data/addgene_plasmids/27106.depositor-full.gb" }, @@ -24742,7 +31100,10 @@ "plasmid_name": "pLX307 Luciferase", "sequence-type": "addgene-full", "addgene_id": "117734", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117734.addgene-full.gb" }, @@ -24751,7 +31112,10 @@ "plasmid_name": "pCR8-Magneto2.0", "sequence-type": "depositor-full", "addgene_id": "74333", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4265", + "https://www.ncbi.nlm.nih.gov/pubmed/26950006" + ], "kit": null, "file": "data/addgene_plasmids/74333.depositor-full.gb" }, @@ -24760,7 +31124,10 @@ "plasmid_name": "pDONR223_DKK1_WT", "sequence-type": "addgene-full", "addgene_id": "82250", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82250.addgene-full.gb" }, @@ -24769,7 +31136,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0395-luc2", "sequence-type": "addgene-full", "addgene_id": "214627", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214627.addgene-full.gb" }, @@ -24778,7 +31148,10 @@ "plasmid_name": "pAC150-PBLHL-4xHS-EF1a-DEST", "sequence-type": "depositor-full", "addgene_id": "48234", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/48234.depositor-full.gb" }, @@ -24787,7 +31160,10 @@ "plasmid_name": "pENTR-E2F1-PIP3A", "sequence-type": "depositor-full", "addgene_id": "37142", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2008.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19081076" + ], "kit": null, "file": "data/addgene_plasmids/37142.depositor-full.gb" }, @@ -24796,7 +31172,6 @@ "plasmid_name": "pHAGE-cDEST-APEX2", "sequence-type": "addgene-full", "addgene_id": "214993", - "references": [], "kit": null, "file": "data/addgene_plasmids/214993.addgene-full.gb" }, @@ -24805,7 +31180,10 @@ "plasmid_name": "pWS067", "sequence-type": "addgene-full", "addgene_id": "123044", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123044.addgene-full.gb" }, @@ -24814,7 +31192,10 @@ "plasmid_name": "pDONR221_SLC30A10", "sequence-type": "addgene-full", "addgene_id": "132125", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132125.addgene-full.gb" }, @@ -24823,7 +31204,9 @@ "plasmid_name": "pDONR223-TAF5-FL_WobbleMut", "sequence-type": "addgene-full", "addgene_id": "209053", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209053.addgene-full.gb" }, @@ -24832,7 +31215,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NI_G1333-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171724", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171724.addgene-full.gb" }, @@ -24841,7 +31227,10 @@ "plasmid_name": "pGL2206", "sequence-type": "addgene-full", "addgene_id": "137047", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-9210-2_10", + "https://www.ncbi.nlm.nih.gov/pubmed/30980305" + ], "kit": null, "file": "data/addgene_plasmids/137047.addgene-full.gb" }, @@ -24850,7 +31239,6 @@ "plasmid_name": "CTNNB1 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216617", - "references": [], "kit": null, "file": "data/addgene_plasmids/216617.addgene-full.gb" }, @@ -24859,7 +31247,9 @@ "plasmid_name": "piggyBac-rtTA (4th_Gen)-SNCA(A53T)-sfGFP-IRES-NGN2-puro (VK_1123)", "sequence-type": "addgene-full", "addgene_id": "209080", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.11.08.515615" + ], "kit": null, "file": "data/addgene_plasmids/209080.addgene-full.gb" }, @@ -24868,7 +31258,10 @@ "plasmid_name": "pYPQ202", "sequence-type": "addgene-full", "addgene_id": "86198", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "file": "data/addgene_plasmids/86198.addgene-full.gb" }, @@ -24877,7 +31270,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-3", "sequence-type": "depositor-full", "addgene_id": "46698", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46698.depositor-full.gb" }, @@ -24886,7 +31282,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAP WT", "sequence-type": "addgene-full", "addgene_id": "123097", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123097.addgene-full.gb" }, @@ -24895,7 +31294,10 @@ "plasmid_name": "pAd-PRL.Cre", "sequence-type": "addgene-full", "addgene_id": "192937", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "file": "data/addgene_plasmids/192937.addgene-full.gb" }, @@ -24904,7 +31306,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV NS4B", "sequence-type": "addgene-full", "addgene_id": "145367", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145367.addgene-full.gb" }, @@ -24913,7 +31318,10 @@ "plasmid_name": "pAG426GPD-ccdB", "sequence-type": "addgene-full", "addgene_id": "14156", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -24925,7 +31333,10 @@ "plasmid_name": "C234-E08: attB2r-3xFLAG-attB3", "sequence-type": "addgene-full", "addgene_id": "162912", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -24937,7 +31348,10 @@ "plasmid_name": "pDONR221_SLC4A9", "sequence-type": "addgene-full", "addgene_id": "132216", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132216.addgene-full.gb" }, @@ -24946,7 +31360,10 @@ "plasmid_name": "pMCS-GW", "sequence-type": "addgene-full", "addgene_id": "209360", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209360.addgene-full.gb" }, @@ -24955,7 +31372,10 @@ "plasmid_name": "pAG304GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14135", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -24967,7 +31387,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NRF2", "sequence-type": "addgene-full", "addgene_id": "207811", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207811.addgene-full.gb" }, @@ -24976,7 +31399,10 @@ "plasmid_name": "pHAGE-PIK3CA-K111delK", "sequence-type": "addgene-full", "addgene_id": "116505", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116505.addgene-full.gb" }, @@ -24985,7 +31411,10 @@ "plasmid_name": "pCFJ2451 - [1-2] ENTR - Fluor - ce-tagBFP2(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159845", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159845.addgene-full.gb" }, @@ -24994,7 +31423,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj13-T131A-EGFP", "sequence-type": "addgene-full", "addgene_id": "164942", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164942.addgene-full.gb" }, @@ -25003,7 +31435,10 @@ "plasmid_name": "pDONR223_MOS_WT", "sequence-type": "addgene-full", "addgene_id": "82218", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82218.addgene-full.gb" }, @@ -25012,7 +31447,10 @@ "plasmid_name": "pMEsheP1gfp", "sequence-type": "addgene-full", "addgene_id": "90130", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90130.addgene-full.gb" }, @@ -25021,7 +31459,10 @@ "plasmid_name": "PB-TET", "sequence-type": "addgene-full", "addgene_id": "20909", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "file": "data/addgene_plasmids/20909.addgene-full.gb" }, @@ -25030,7 +31471,10 @@ "plasmid_name": "LIIIalpha fin", "sequence-type": "depositor-full", "addgene_id": "54381", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54381.depositor-full.gb" }, @@ -25039,7 +31483,10 @@ "plasmid_name": "pDONR223_REG1A_p.S131I", "sequence-type": "addgene-full", "addgene_id": "81265", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -25051,7 +31498,6 @@ "plasmid_name": "IDG_KCND1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161640", - "references": [], "kit": null, "file": "data/addgene_plasmids/161640.addgene-full.gb" }, @@ -25060,7 +31506,10 @@ "plasmid_name": "pDONR207-MUM2sp-RglB", "sequence-type": "addgene-full", "addgene_id": "170721", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcab077", + "https://www.ncbi.nlm.nih.gov/pubmed/34059917" + ], "kit": null, "file": "data/addgene_plasmids/170721.addgene-full.gb" }, @@ -25069,7 +31518,10 @@ "plasmid_name": "pLX313-TP53-WT", "sequence-type": "addgene-full", "addgene_id": "118014", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-018-0204-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30224644" + ], "kit": null, "file": "data/addgene_plasmids/118014.addgene-full.gb" }, @@ -25078,7 +31530,9 @@ "plasmid_name": "pRL055 pDESTattB_cryaa:Venus", "sequence-type": "addgene-full", "addgene_id": "213509", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.12.08.570868" + ], "kit": null, "file": "data/addgene_plasmids/213509.addgene-full.gb" }, @@ -25087,7 +31541,10 @@ "plasmid_name": "pHAGE-EGFR", "sequence-type": "addgene-full", "addgene_id": "116731", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116731.addgene-full.gb" }, @@ -25096,7 +31553,10 @@ "plasmid_name": "pAD-CMV-STAT5A-CA-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83255", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "file": "data/addgene_plasmids/83255.addgene-full.gb" }, @@ -25105,7 +31565,10 @@ "plasmid_name": "MAC_C_COX14", "sequence-type": "addgene-full", "addgene_id": "111663", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111663.addgene-full.gb" }, @@ -25114,7 +31577,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST LIN28B", "sequence-type": "depositor-full", "addgene_id": "43798", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.036491.112", + "https://www.ncbi.nlm.nih.gov/pubmed/23481595" + ], "kit": null, "file": "data/addgene_plasmids/43798.depositor-full.gb" }, @@ -25123,7 +31589,10 @@ "plasmid_name": "D. vulgaris Cascade/I-C (Cas5c-Cas8c-Cas7)/pHMGWA", "sequence-type": "addgene-full", "addgene_id": "81185", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2016.07.027", + "https://www.ncbi.nlm.nih.gov/pubmed/27588603" + ], "kit": null, "file": "data/addgene_plasmids/81185.addgene-full.gb" }, @@ -25132,7 +31601,10 @@ "plasmid_name": "pYPQ265F2", "sequence-type": "addgene-full", "addgene_id": "164722", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164722.addgene-full.gb" }, @@ -25141,7 +31613,6 @@ "plasmid_name": "Hs.KRAS4b K104A", "sequence-type": "depositor-full", "addgene_id": "83152", - "references": [], "kit": null, "file": "data/addgene_plasmids/83152.depositor-full.gb" }, @@ -25150,7 +31621,10 @@ "plasmid_name": "pHAGE-3FLAG-EEA1", "sequence-type": "addgene-full", "addgene_id": "176491", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "file": "data/addgene_plasmids/176491.addgene-full.gb" }, @@ -25159,7 +31633,10 @@ "plasmid_name": "pCPP5154", "sequence-type": "addgene-full", "addgene_id": "128704", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128704.addgene-full.gb" }, @@ -25168,7 +31645,10 @@ "plasmid_name": "pDONR221_SLC20A2", "sequence-type": "addgene-full", "addgene_id": "132022", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132022.addgene-full.gb" }, @@ -25177,7 +31657,10 @@ "plasmid_name": "pDONR221 DPP9S", "sequence-type": "addgene-full", "addgene_id": "166789", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166789.addgene-full.gb" }, @@ -25186,7 +31669,6 @@ "plasmid_name": "R777-E151 Hs.PAK3", "sequence-type": "depositor-full", "addgene_id": "70435", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -25198,7 +31680,10 @@ "plasmid_name": "pAG415GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14386", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -25210,7 +31695,6 @@ "plasmid_name": "pTpPBR11_fcpNAT_GWB", "sequence-type": "addgene-full", "addgene_id": "154032", - "references": [], "kit": null, "file": "data/addgene_plasmids/154032.addgene-full.gb" }, @@ -25219,7 +31703,10 @@ "plasmid_name": "pMuLE ENTR CMV PuroR R4-R3", "sequence-type": "depositor-full", "addgene_id": "62162", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62162.depositor-full.gb" }, @@ -25228,7 +31715,10 @@ "plasmid_name": "MAC-tag-C", "sequence-type": "addgene-full", "addgene_id": "108077", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/108077.addgene-full.gb" }, @@ -25237,7 +31727,10 @@ "plasmid_name": "pENTR-L3-Csy4-Cas9n-L2", "sequence-type": "addgene-full", "addgene_id": "141041", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141041.addgene-full.gb" }, @@ -25246,7 +31739,10 @@ "plasmid_name": "pHAGE-PTPN11-G60R", "sequence-type": "addgene-full", "addgene_id": "116643", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116643.addgene-full.gb" }, @@ -25255,7 +31751,10 @@ "plasmid_name": "DYRK1A_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53791", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53791.addgene-full.gb" }, @@ -25264,7 +31763,10 @@ "plasmid_name": "pLgw EcoDam-V5-NKX2-5Y191C", "sequence-type": "addgene-full", "addgene_id": "98598", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98598.addgene-full.gb" }, @@ -25273,7 +31775,10 @@ "plasmid_name": "pFRT-TODestMYC_RBPMS2", "sequence-type": "depositor-full", "addgene_id": "65668", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65668.depositor-full.gb" }, @@ -25282,7 +31787,10 @@ "plasmid_name": "pCZGY1584 Pcol-19::ebp-2::mGFP::unc-54 3'UTR", "sequence-type": "addgene-full", "addgene_id": "129774", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.15833", + "https://www.ncbi.nlm.nih.gov/pubmed/27661253" + ], "kit": null, "file": "data/addgene_plasmids/129774.addgene-full.gb" }, @@ -25291,7 +31799,10 @@ "plasmid_name": "pDL54", "sequence-type": "addgene-full", "addgene_id": "175885", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175885.addgene-full.gb" }, @@ -25300,7 +31811,6 @@ "plasmid_name": "pCM1.107", "sequence-type": "depositor-full", "addgene_id": "19595", - "references": [], "kit": null, "file": "data/addgene_plasmids/19595.depositor-full.gb" }, @@ -25309,7 +31819,9 @@ "plasmid_name": "pDONR207-Lifeact-Citrine", "sequence-type": "addgene-full", "addgene_id": "100590", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27703856" + ], "kit": null, "file": "data/addgene_plasmids/100590.addgene-full.gb" }, @@ -25318,7 +31830,10 @@ "plasmid_name": "pDest-667 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161886", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -25330,7 +31845,10 @@ "plasmid_name": "pDONR223_HIST1H3B_p.A48S", "sequence-type": "addgene-full", "addgene_id": "81317", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -25342,7 +31860,10 @@ "plasmid_name": "pDONR221-HES5", "sequence-type": "addgene-full", "addgene_id": "101409", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101409.addgene-full.gb" }, @@ -25351,7 +31872,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS7", "sequence-type": "depositor-full", "addgene_id": "20246", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20246.depositor-full.gb" }, @@ -25360,7 +31884,10 @@ "plasmid_name": "pDONR223-PFKL", "sequence-type": "addgene-full", "addgene_id": "23729", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -25372,7 +31899,10 @@ "plasmid_name": "pHAGE-PIK3CA-R88Q", "sequence-type": "addgene-full", "addgene_id": "116538", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116538.addgene-full.gb" }, @@ -25381,7 +31911,10 @@ "plasmid_name": "pHAGE TRE dCas9-KRAB", "sequence-type": "addgene-full", "addgene_id": "50917", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.103341", + "https://www.ncbi.nlm.nih.gov/pubmed/24346702" + ], "kit": null, "file": "data/addgene_plasmids/50917.addgene-full.gb" }, @@ -25390,7 +31923,10 @@ "plasmid_name": "pCFJ2359 - intron GG2 - 250bp", "sequence-type": "addgene-full", "addgene_id": "159878", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159878.addgene-full.gb" }, @@ -25399,7 +31935,10 @@ "plasmid_name": "MAC_N_IRF5", "sequence-type": "addgene-full", "addgene_id": "167762", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167762.addgene-full.gb" }, @@ -25408,7 +31947,10 @@ "plasmid_name": "pDONR223_PRKCA_WT", "sequence-type": "addgene-full", "addgene_id": "82225", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82225.addgene-full.gb" }, @@ -25417,7 +31959,10 @@ "plasmid_name": "pGL4_EGR1p-BC1488-luc2", "sequence-type": "addgene-full", "addgene_id": "214652", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214652.addgene-full.gb" }, @@ -25426,7 +31971,10 @@ "plasmid_name": "pENTR223-BCRF1(vIL10)", "sequence-type": "addgene-full", "addgene_id": "195777", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195777.addgene-full.gb" }, @@ -25435,7 +31983,10 @@ "plasmid_name": "pME-MmCavin4", "sequence-type": "addgene-full", "addgene_id": "170528", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64630", + "https://www.ncbi.nlm.nih.gov/pubmed/33904409" + ], "kit": null, "file": "data/addgene_plasmids/170528.addgene-full.gb" }, @@ -25444,7 +31995,10 @@ "plasmid_name": "pDONR221-SLC27A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161449", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161449.addgene-full.gb" }, @@ -25453,7 +32007,10 @@ "plasmid_name": "Flag-HA-OTUD7B", "sequence-type": "addgene-full", "addgene_id": "22550", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22550.addgene-full.gb" }, @@ -25462,7 +32019,10 @@ "plasmid_name": "pDONR221-SLC4A5_STOP", "sequence-type": "depositor-full", "addgene_id": "161450", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161450.depositor-full.gb" }, @@ -25471,7 +32031,10 @@ "plasmid_name": "pDONR221_SLC2A13", "sequence-type": "addgene-full", "addgene_id": "132150", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132150.addgene-full.gb" }, @@ -25480,7 +32043,10 @@ "plasmid_name": "pWS483", "sequence-type": "addgene-full", "addgene_id": "123031", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123031.addgene-full.gb" }, @@ -25489,7 +32055,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(TM-KTM)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128676", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128676.addgene-full.gb" }, @@ -25498,7 +32067,6 @@ "plasmid_name": "DDX3X - Y466D in pENTR", "sequence-type": "addgene-full", "addgene_id": "216582", - "references": [], "kit": null, "file": "data/addgene_plasmids/216582.addgene-full.gb" }, @@ -25507,7 +32075,10 @@ "plasmid_name": "Arabidopsis_thaliana _PheRS_DualTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202661", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "file": "data/addgene_plasmids/202661.addgene-full.gb" }, @@ -25516,7 +32087,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-WT-puro", "sequence-type": "addgene-full", "addgene_id": "156170", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156170.addgene-full.gb" }, @@ -25525,7 +32099,6 @@ "plasmid_name": "p667-UBC-STK17A-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214466", - "references": [], "kit": null, "file": "data/addgene_plasmids/214466.addgene-full.gb" }, @@ -25534,7 +32107,10 @@ "plasmid_name": "pCAG/ATP8B4-HA", "sequence-type": "addgene-full", "addgene_id": "209212", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209212.addgene-full.gb" }, @@ -25543,7 +32119,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp7", "sequence-type": "depositor-full", "addgene_id": "168896", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168896.depositor-full.gb" }, @@ -25552,7 +32131,10 @@ "plasmid_name": "PE_17: Plas_lac_eG", "sequence-type": "addgene-full", "addgene_id": "104870", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104870.addgene-full.gb" }, @@ -25561,7 +32143,10 @@ "plasmid_name": "pDONR223 LC3B no-stop", "sequence-type": "addgene-full", "addgene_id": "123205", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123205.addgene-full.gb" }, @@ -25570,7 +32155,10 @@ "plasmid_name": "pME-Cas9-T2A-GFP", "sequence-type": "addgene-full", "addgene_id": "63155", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.01.032", + "https://www.ncbi.nlm.nih.gov/pubmed/25752963" + ], "kit": null, "file": "data/addgene_plasmids/63155.addgene-full.gb" }, @@ -25579,7 +32167,6 @@ "plasmid_name": "pENTR-L4R1-hEF1a", "sequence-type": "addgene-full", "addgene_id": "139523", - "references": [], "kit": null, "file": "data/addgene_plasmids/139523.addgene-full.gb" }, @@ -25588,7 +32175,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir193b-2", "sequence-type": "depositor-full", "addgene_id": "46732", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46732.depositor-full.gb" }, @@ -25597,7 +32187,6 @@ "plasmid_name": "pLEX307-FURIN-blast", "sequence-type": "addgene-full", "addgene_id": "158461", - "references": [], "kit": null, "file": "data/addgene_plasmids/158461.addgene-full.gb" }, @@ -25606,7 +32195,10 @@ "plasmid_name": "pDONR221_SLC36A1", "sequence-type": "addgene-full", "addgene_id": "132084", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132084.addgene-full.gb" }, @@ -25615,7 +32207,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::RfA-CFP", "sequence-type": "addgene-full", "addgene_id": "186412", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186412.addgene-full.gb" }, @@ -25624,7 +32219,10 @@ "plasmid_name": "R701-X55-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) G12V", "sequence-type": "addgene-full", "addgene_id": "159563", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159563.addgene-full.gb" }, @@ -25633,7 +32231,10 @@ "plasmid_name": "pHAGE-STK33", "sequence-type": "addgene-full", "addgene_id": "116797", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116797.addgene-full.gb" }, @@ -25642,7 +32243,10 @@ "plasmid_name": "pENTR221-sGFP", "sequence-type": "addgene-full", "addgene_id": "79508", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79508.addgene-full.gb" }, @@ -25651,7 +32255,10 @@ "plasmid_name": "pHAGE-IDE__CAMK1D", "sequence-type": "addgene-full", "addgene_id": "116823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116823.addgene-full.gb" }, @@ -25660,7 +32267,10 @@ "plasmid_name": "pAG413GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14262", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -25672,7 +32282,10 @@ "plasmid_name": "pDONR221-Ckb1", "sequence-type": "addgene-full", "addgene_id": "99981", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99981.addgene-full.gb" }, @@ -25681,7 +32294,10 @@ "plasmid_name": "pHAGE-PIK3CA-E542A", "sequence-type": "addgene-full", "addgene_id": "116477", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116477.addgene-full.gb" }, @@ -25690,7 +32306,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF6", "sequence-type": "addgene-full", "addgene_id": "141275", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141275.addgene-full.gb" }, @@ -25699,7 +32318,10 @@ "plasmid_name": "pMuLE ENTR MCS R4-R3", "sequence-type": "depositor-full", "addgene_id": "62086", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62086.depositor-full.gb" }, @@ -25708,7 +32330,10 @@ "plasmid_name": "PB-TET-mcMyc", "sequence-type": "depositor-full", "addgene_id": "20888", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "file": "data/addgene_plasmids/20888.depositor-full.gb" }, @@ -25717,7 +32342,10 @@ "plasmid_name": "hsp70: mKate2-DN Kif5a", "sequence-type": "addgene-full", "addgene_id": "105972", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21206", + "https://www.ncbi.nlm.nih.gov/pubmed/26879757" + ], "kit": null, "file": "data/addgene_plasmids/105972.addgene-full.gb" }, @@ -25726,7 +32354,9 @@ "plasmid_name": "pMpGWB214", "sequence-type": "depositor-full", "addgene_id": "68605", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68605.depositor-full.gb" }, @@ -25735,7 +32365,10 @@ "plasmid_name": "Proinsulin-NanoLuc in pLX304", "sequence-type": "addgene-full", "addgene_id": "62057", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/25565210" + ], "kit": null, "file": "data/addgene_plasmids/62057.addgene-full.gb" }, @@ -25744,7 +32377,10 @@ "plasmid_name": "pcDNA3.2/DEST/hTfR-HA", "sequence-type": "addgene-full", "addgene_id": "69610", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.111.257964", + "https://www.ncbi.nlm.nih.gov/pubmed/22328533" + ], "kit": null, "file": "data/addgene_plasmids/69610.addgene-full.gb" }, @@ -25753,7 +32389,10 @@ "plasmid_name": "PB-hEF1A-MG-U6-sgRNA", "sequence-type": "addgene-full", "addgene_id": "175505", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175505.addgene-full.gb" }, @@ -25762,7 +32401,10 @@ "plasmid_name": "R703-M80-303: CMV51p> Halotag-Kras4bHVR", "sequence-type": "addgene-full", "addgene_id": "159683", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "file": "data/addgene_plasmids/159683.addgene-full.gb" }, @@ -25771,7 +32413,10 @@ "plasmid_name": "KY801: pMVP (L3-L2) P2A-eGFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121764", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121764.addgene-full.gb" }, @@ -25780,7 +32425,10 @@ "plasmid_name": "pMXs-ms-Klf5", "sequence-type": "depositor-full", "addgene_id": "50787", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "file": "data/addgene_plasmids/50787.depositor-full.gb" }, @@ -25789,7 +32437,10 @@ "plasmid_name": "LIIalpha R 3-4", "sequence-type": "depositor-full", "addgene_id": "54351", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54351.depositor-full.gb" }, @@ -25798,7 +32449,10 @@ "plasmid_name": "pDONR223_EGFR_p.T790M_p.L858R", "sequence-type": "addgene-full", "addgene_id": "82914", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82914.addgene-full.gb" }, @@ -25807,7 +32461,6 @@ "plasmid_name": "pCDNA.3-V5-SPOP (R221C)", "sequence-type": "addgene-full", "addgene_id": "197022", - "references": [], "kit": null, "file": "data/addgene_plasmids/197022.addgene-full.gb" }, @@ -25816,7 +32469,10 @@ "plasmid_name": "TFORF3493", "sequence-type": "addgene-full", "addgene_id": "144969", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144969.addgene-full.gb" }, @@ -25825,7 +32481,10 @@ "plasmid_name": "pCM5.58", "sequence-type": "depositor-full", "addgene_id": "19375", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19375.depositor-full.gb" }, @@ -25834,7 +32493,10 @@ "plasmid_name": "pAFMW-Nbr[N1-383]", "sequence-type": "addgene-full", "addgene_id": "188586", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188586.addgene-full.gb" }, @@ -25843,7 +32505,10 @@ "plasmid_name": "SPOP-V5 (BACK))", "sequence-type": "addgene-full", "addgene_id": "169722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169722.addgene-full.gb" }, @@ -25852,7 +32517,6 @@ "plasmid_name": "Hs.HRAS G12C", "sequence-type": "depositor-full", "addgene_id": "83182", - "references": [], "kit": null, "file": "data/addgene_plasmids/83182.depositor-full.gb" }, @@ -25861,7 +32525,10 @@ "plasmid_name": "pAAV_12xTEAD_luc2", "sequence-type": "addgene-full", "addgene_id": "173004", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/173004.addgene-full.gb" }, @@ -25870,7 +32537,10 @@ "plasmid_name": "pDONR223_WNK3_p.S617F", "sequence-type": "addgene-full", "addgene_id": "81709", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -25882,7 +32552,6 @@ "plasmid_name": "R777-E333 Hs.SPRY4", "sequence-type": "depositor-full", "addgene_id": "70618", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -25894,7 +32563,10 @@ "plasmid_name": "pCZGY2838", "sequence-type": "addgene-full", "addgene_id": "87759", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/87759.addgene-full.gb" }, @@ -25903,7 +32575,10 @@ "plasmid_name": "pDONR223_REG3A_WT", "sequence-type": "addgene-full", "addgene_id": "81826", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -25927,7 +32602,10 @@ "plasmid_name": "pDONR223_GZMA_WT", "sequence-type": "addgene-full", "addgene_id": "81792", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -25939,7 +32617,10 @@ "plasmid_name": "pMOS011E: Entry vector for: superecliptic pHluorin (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163067", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163067.addgene-full.gb" }, @@ -25948,7 +32629,10 @@ "plasmid_name": "pENTR-AtMIR390a-B/c", "sequence-type": "depositor-full", "addgene_id": "51778", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.113.234989", + "https://www.ncbi.nlm.nih.gov/pubmed/24647477" + ], "kit": null, "file": "data/addgene_plasmids/51778.depositor-full.gb" }, @@ -25957,7 +32641,10 @@ "plasmid_name": "pHAGE-BCL2-H20Q", "sequence-type": "addgene-full", "addgene_id": "116126", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116126.addgene-full.gb" }, @@ -25966,7 +32653,6 @@ "plasmid_name": "HCP3", "sequence-type": "addgene-full", "addgene_id": "166105", - "references": [], "kit": null, "file": "data/addgene_plasmids/166105.addgene-full.gb" }, @@ -25975,7 +32661,10 @@ "plasmid_name": "pPN460", "sequence-type": "addgene-full", "addgene_id": "137878", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "file": "data/addgene_plasmids/137878.addgene-full.gb" }, @@ -25984,7 +32673,10 @@ "plasmid_name": "TFORF3170", "sequence-type": "addgene-full", "addgene_id": "144646", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144646.addgene-full.gb" }, @@ -25993,7 +32685,10 @@ "plasmid_name": "actc1b-mKate2-Rab27b", "sequence-type": "addgene-full", "addgene_id": "109762", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109762.addgene-full.gb" }, @@ -26002,7 +32697,10 @@ "plasmid_name": "pMuLE (R4-R3) PRB", "sequence-type": "addgene-full", "addgene_id": "206164", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "file": "data/addgene_plasmids/206164.addgene-full.gb" }, @@ -26011,7 +32709,10 @@ "plasmid_name": "dpYPQ230-D156R-CBE4", "sequence-type": "addgene-full", "addgene_id": "195369", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "file": "data/addgene_plasmids/195369.addgene-full.gb" }, @@ -26020,7 +32721,10 @@ "plasmid_name": "pCW-eGFP-SHLD1", "sequence-type": "addgene-full", "addgene_id": "114116", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "file": "data/addgene_plasmids/114116.addgene-full.gb" }, @@ -26029,7 +32733,10 @@ "plasmid_name": "pDONR223_GABRA6_p.G212R", "sequence-type": "addgene-full", "addgene_id": "81472", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -26041,7 +32748,10 @@ "plasmid_name": "pDONR221-SLC6A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161057", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161057.addgene-full.gb" }, @@ -26050,7 +32760,10 @@ "plasmid_name": "pAG306GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14356", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -26062,7 +32775,10 @@ "plasmid_name": "TFORF2996", "sequence-type": "addgene-full", "addgene_id": "144472", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144472.addgene-full.gb" }, @@ -26071,7 +32787,10 @@ "plasmid_name": "p3E-ATG18", "sequence-type": "addgene-full", "addgene_id": "109556", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109556.addgene-full.gb" }, @@ -26080,7 +32799,10 @@ "plasmid_name": "BAF-WT-tet-puro", "sequence-type": "addgene-full", "addgene_id": "199648", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "file": "data/addgene_plasmids/199648.addgene-full.gb" }, @@ -26089,7 +32811,10 @@ "plasmid_name": "DDX27", "sequence-type": "addgene-full", "addgene_id": "155513", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155513.addgene-full.gb" }, @@ -26098,7 +32823,10 @@ "plasmid_name": "Ad-FOXO1 1-360", "sequence-type": "addgene-full", "addgene_id": "131533", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "file": "data/addgene_plasmids/131533.addgene-full.gb" }, @@ -26107,7 +32835,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-let-7", "sequence-type": "depositor-full", "addgene_id": "46648", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46648.depositor-full.gb" }, @@ -26116,7 +32847,10 @@ "plasmid_name": "pDONR221-SLC35F4_STOP", "sequence-type": "addgene-full", "addgene_id": "161263", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161263.addgene-full.gb" }, @@ -26125,7 +32859,10 @@ "plasmid_name": "pDONR223_HAPLN1_p.K115N", "sequence-type": "addgene-full", "addgene_id": "81646", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -26137,7 +32874,6 @@ "plasmid_name": "p667-UBC-SRPK3-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189904", - "references": [], "kit": null, "file": "data/addgene_plasmids/189904.addgene-full.gb" }, @@ -26146,7 +32882,10 @@ "plasmid_name": "pCLX-G4E1b-R1DESTR2-MIFE-PGK-mCherry", "sequence-type": "addgene-full", "addgene_id": "114322", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "file": "data/addgene_plasmids/114322.addgene-full.gb" }, @@ -26155,7 +32894,10 @@ "plasmid_name": "DYNLT3_pLX307", "sequence-type": "addgene-full", "addgene_id": "98329", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98329.addgene-full.gb" }, @@ -26164,7 +32906,10 @@ "plasmid_name": "pEBTetBl-CLIP-POC5", "sequence-type": "addgene-full", "addgene_id": "136835", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136835.addgene-full.gb" }, @@ -26173,7 +32918,9 @@ "plasmid_name": "pMpGWB128", "sequence-type": "depositor-full", "addgene_id": "68582", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68582.depositor-full.gb" }, @@ -26182,7 +32929,6 @@ "plasmid_name": "pSCM167-Venus-VF-hSFRP1(aa181-314)", "sequence-type": "addgene-full", "addgene_id": "189550", - "references": [], "kit": null, "file": "data/addgene_plasmids/189550.addgene-full.gb" }, @@ -26191,7 +32937,10 @@ "plasmid_name": "pDONR221-SLC25A35_STOP", "sequence-type": "addgene-full", "addgene_id": "161183", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161183.addgene-full.gb" }, @@ -26200,7 +32949,10 @@ "plasmid_name": "TFORF3350", "sequence-type": "addgene-full", "addgene_id": "144826", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144826.addgene-full.gb" }, @@ -26209,7 +32961,10 @@ "plasmid_name": "pHAGE-EGFR-V148M", "sequence-type": "addgene-full", "addgene_id": "116312", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116312.addgene-full.gb" }, @@ -26218,7 +32973,10 @@ "plasmid_name": "pDONR221_SLC25A15", "sequence-type": "addgene-full", "addgene_id": "131967", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131967.addgene-full.gb" }, @@ -26227,7 +32985,10 @@ "plasmid_name": "TFORF3316", "sequence-type": "addgene-full", "addgene_id": "144792", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144792.addgene-full.gb" }, @@ -26236,7 +32997,10 @@ "plasmid_name": "pHAGE-FGFR3-V50I", "sequence-type": "addgene-full", "addgene_id": "116389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116389.addgene-full.gb" }, @@ -26245,7 +33009,10 @@ "plasmid_name": "TFORF3233", "sequence-type": "addgene-full", "addgene_id": "144709", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144709.addgene-full.gb" }, @@ -26254,7 +33021,10 @@ "plasmid_name": "pCMB-TGN41r", "sequence-type": "depositor-full", "addgene_id": "61177", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61177.depositor-full.gb" }, @@ -26263,7 +33033,10 @@ "plasmid_name": "Munc18cwt-pDEST27", "sequence-type": "addgene-full", "addgene_id": "85626", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1600-0854.2006.00474.x", + "https://www.ncbi.nlm.nih.gov/pubmed/16899085" + ], "kit": null, "file": "data/addgene_plasmids/85626.addgene-full.gb" }, @@ -26272,7 +33045,10 @@ "plasmid_name": "pBabe_puro_DEST_Flag_PLD1", "sequence-type": "addgene-full", "addgene_id": "45268", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-12-0592", + "https://www.ncbi.nlm.nih.gov/pubmed/23764425" + ], "kit": null, "file": "data/addgene_plasmids/45268.addgene-full.gb" }, @@ -26281,7 +33057,10 @@ "plasmid_name": "pDONR223_DOK1_p.V393L", "sequence-type": "addgene-full", "addgene_id": "82774", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82774.addgene-full.gb" }, @@ -26290,7 +33069,6 @@ "plasmid_name": "R777-E047 Hs.E2F2", "sequence-type": "depositor-full", "addgene_id": "70331", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -26302,7 +33080,9 @@ "plasmid_name": "pME-Luciferase-P2A-H2A-mCherry (JDW 926)", "sequence-type": "addgene-full", "addgene_id": "224488", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224488.addgene-full.gb" }, @@ -26311,7 +33091,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP13", "sequence-type": "addgene-full", "addgene_id": "154411", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154411.addgene-full.gb" }, @@ -26320,7 +33103,10 @@ "plasmid_name": "pFRT_TO_eGFP_TIAL1", "sequence-type": "addgene-full", "addgene_id": "106091", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106091.addgene-full.gb" }, @@ -26329,7 +33115,10 @@ "plasmid_name": "pDONR221-K202R-short-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192094", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/192094.addgene-full.gb" }, @@ -26338,7 +33127,10 @@ "plasmid_name": "pAG423GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14318", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -26350,7 +33142,6 @@ "plasmid_name": "pCLX-UBI-GFPf", "sequence-type": "depositor-full", "addgene_id": "27248", - "references": [], "kit": null, "file": "data/addgene_plasmids/27248.depositor-full.gb" }, @@ -26359,7 +33150,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-Halotag-RfA", "sequence-type": "addgene-full", "addgene_id": "186377", - "references": [], "kit": null, "file": "data/addgene_plasmids/186377.addgene-full.gb" }, @@ -26368,7 +33158,10 @@ "plasmid_name": "R620-M04-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(318-529)-3C-His8-SBP N501Y", "sequence-type": "addgene-full", "addgene_id": "170190", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/170190.addgene-full.gb" }, @@ -26377,7 +33170,10 @@ "plasmid_name": "pDONR223_RBM34_WT", "sequence-type": "addgene-full", "addgene_id": "82929", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82929.addgene-full.gb" }, @@ -26386,7 +33182,10 @@ "plasmid_name": "IZ901: pMVP (L3-L2) OLLAS epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121759", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121759.addgene-full.gb" }, @@ -26395,7 +33194,10 @@ "plasmid_name": "p221k-erTq2CFP", "sequence-type": "depositor-full", "addgene_id": "71264", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71264.depositor-full.gb" }, @@ -26404,7 +33206,10 @@ "plasmid_name": "pHAGE-EGFR-H304Y", "sequence-type": "addgene-full", "addgene_id": "116260", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116260.addgene-full.gb" }, @@ -26413,7 +33218,10 @@ "plasmid_name": "TFORF3478", "sequence-type": "addgene-full", "addgene_id": "144954", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144954.addgene-full.gb" }, @@ -26422,7 +33230,10 @@ "plasmid_name": "pDONR223-ZNF69", "sequence-type": "addgene-full", "addgene_id": "88143", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88143.addgene-full.gb" }, @@ -26431,7 +33242,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp4", "sequence-type": "depositor-full", "addgene_id": "168846", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168846.depositor-full.gb" }, @@ -26440,7 +33254,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp4", "sequence-type": "addgene-full", "addgene_id": "168932", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168932.addgene-full.gb" }, @@ -26449,7 +33266,10 @@ "plasmid_name": "pHAGE-BRAF-L597V", "sequence-type": "addgene-full", "addgene_id": "116180", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116180.addgene-full.gb" }, @@ -26458,7 +33278,10 @@ "plasmid_name": "pLEX307-IBV-3CL", "sequence-type": "addgene-full", "addgene_id": "160288", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160288.addgene-full.gb" }, @@ -26467,7 +33290,10 @@ "plasmid_name": "TFORF3024", "sequence-type": "addgene-full", "addgene_id": "144500", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144500.addgene-full.gb" }, @@ -26476,7 +33302,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189876", - "references": [], "kit": null, "file": "data/addgene_plasmids/189876.addgene-full.gb" }, @@ -26485,7 +33310,10 @@ "plasmid_name": "pDONR223_CTNNB1_WT", "sequence-type": "addgene-full", "addgene_id": "81734", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -26497,7 +33325,10 @@ "plasmid_name": "p{Mhc-F4-678-eGFP::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182185", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182185.addgene-full.gb" }, @@ -26506,7 +33337,10 @@ "plasmid_name": "pDONR223_HERPUD2_WT", "sequence-type": "addgene-full", "addgene_id": "81880", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -26518,7 +33352,10 @@ "plasmid_name": "pDONR221-SLC35E4_STOP", "sequence-type": "addgene-full", "addgene_id": "161311", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161311.addgene-full.gb" }, @@ -26527,7 +33364,10 @@ "plasmid_name": "pAAV2-SynTetOff-FLEX-[FGL-2A-palmRFP1]", "sequence-type": "addgene-full", "addgene_id": "190236", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190236.addgene-full.gb" }, @@ -26536,7 +33376,10 @@ "plasmid_name": "pCZGY2840", "sequence-type": "addgene-full", "addgene_id": "87764", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/87764.addgene-full.gb" }, @@ -26545,7 +33388,6 @@ "plasmid_name": "pLenti UBC LysoFlux (HaloTag7-mGFP-Galectin3)", "sequence-type": "addgene-full", "addgene_id": "215008", - "references": [], "kit": null, "file": "data/addgene_plasmids/215008.addgene-full.gb" }, @@ -26554,7 +33396,10 @@ "plasmid_name": "pAAV-short Cre-on G/W", "sequence-type": "addgene-full", "addgene_id": "86949", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1918241117", + "https://www.ncbi.nlm.nih.gov/pubmed/32300008" + ], "kit": null, "file": "data/addgene_plasmids/86949.addgene-full.gb" }, @@ -26563,7 +33408,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP15_nostop", "sequence-type": "addgene-full", "addgene_id": "149317", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149317.addgene-full.gb" }, @@ -26572,7 +33420,6 @@ "plasmid_name": "LP102: pMAGIC (R4-R3) NLS-Sp Cas9-NLS", "sequence-type": "addgene-full", "addgene_id": "132927", - "references": [], "kit": null, "file": "data/addgene_plasmids/132927.addgene-full.gb" }, @@ -26581,7 +33428,9 @@ "plasmid_name": "pAG415GPD-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166138", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166138.addgene-full.gb" }, @@ -26590,7 +33439,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-VRK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158196", - "references": [], "kit": null, "file": "data/addgene_plasmids/158196.addgene-full.gb" }, @@ -26599,7 +33447,6 @@ "plasmid_name": "R777-E217 Hs.RALB", "sequence-type": "depositor-full", "addgene_id": "70501", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -26611,7 +33458,10 @@ "plasmid_name": "JAK2 (V617F)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64610", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/64610.addgene-full.gb" }, @@ -26620,7 +33470,10 @@ "plasmid_name": "LC001: pMVP/PB/Hygro-DEST", "sequence-type": "addgene-full", "addgene_id": "121876", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121876.addgene-full.gb" }, @@ -26629,7 +33482,10 @@ "plasmid_name": "pENTR4-HA-myc-nuc (w557-1)", "sequence-type": "depositor-full", "addgene_id": "20025", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/20025.depositor-full.gb" }, @@ -26638,7 +33494,10 @@ "plasmid_name": "pBVboostFGII WPRE 2A-CVB3", "sequence-type": "addgene-full", "addgene_id": "202076", - "references": [], + "references": [ + "https://doi.org/10.1128/spectrum.05352-22", + "https://www.ncbi.nlm.nih.gov/pubmed/37227147" + ], "kit": null, "file": "data/addgene_plasmids/202076.addgene-full.gb" }, @@ -26647,7 +33506,10 @@ "plasmid_name": "pWD509", "sequence-type": "depositor-full", "addgene_id": "73739", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.184275", + "https://www.ncbi.nlm.nih.gov/pubmed/26837755" + ], "kit": null, "file": "data/addgene_plasmids/73739.depositor-full.gb" }, @@ -26656,7 +33518,10 @@ "plasmid_name": "SIN-CMV-Cas9-V5-WPRE", "sequence-type": "addgene-full", "addgene_id": "87904", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87904.addgene-full.gb" }, @@ -26665,7 +33530,10 @@ "plasmid_name": "pDONR223_GPR137B_p.S231F", "sequence-type": "addgene-full", "addgene_id": "82866", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82866.addgene-full.gb" }, @@ -26674,7 +33542,10 @@ "plasmid_name": "pEBTet-SNAP-Cep27", "sequence-type": "addgene-full", "addgene_id": "136808", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136808.addgene-full.gb" }, @@ -26683,7 +33554,10 @@ "plasmid_name": "pDONR-IAA17_no stop", "sequence-type": "depositor-full", "addgene_id": "83855", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83855.depositor-full.gb" }, @@ -26692,7 +33566,10 @@ "plasmid_name": "pDONR221-FOXI3", "sequence-type": "depositor-full", "addgene_id": "101518", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101518.depositor-full.gb" }, @@ -26701,7 +33578,10 @@ "plasmid_name": "actc1b-mKate2-rab21", "sequence-type": "addgene-full", "addgene_id": "109610", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109610.addgene-full.gb" }, @@ -26710,7 +33590,10 @@ "plasmid_name": "TFORF3258", "sequence-type": "addgene-full", "addgene_id": "144734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144734.addgene-full.gb" }, @@ -26719,7 +33602,10 @@ "plasmid_name": "pcDNA3.1_Zeo_ARRB2-1-383-CTEV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194382", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194382.addgene-full.gb" }, @@ -26728,7 +33614,10 @@ "plasmid_name": "pDONR223-ZNF695", "sequence-type": "addgene-full", "addgene_id": "88097", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88097.addgene-full.gb" }, @@ -26737,7 +33626,10 @@ "plasmid_name": "TFORF3404", "sequence-type": "addgene-full", "addgene_id": "144880", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144880.addgene-full.gb" }, @@ -26746,7 +33638,10 @@ "plasmid_name": "MLKS2delKASHec", "sequence-type": "addgene-full", "addgene_id": "130858", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "file": "data/addgene_plasmids/130858.addgene-full.gb" }, @@ -26755,7 +33650,10 @@ "plasmid_name": "pDONR223_DARC_p.W253R", "sequence-type": "addgene-full", "addgene_id": "82749", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82749.addgene-full.gb" }, @@ -26764,7 +33662,10 @@ "plasmid_name": "pDONR223_THEMIS_p.E503K", "sequence-type": "addgene-full", "addgene_id": "81500", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -26776,7 +33677,10 @@ "plasmid_name": "pPN10-gCAG", "sequence-type": "addgene-full", "addgene_id": "114384", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms13272", + "https://www.ncbi.nlm.nih.gov/pubmed/27827362" + ], "kit": null, "file": "data/addgene_plasmids/114384.addgene-full.gb" }, @@ -26785,7 +33689,10 @@ "plasmid_name": "pDONR223_U2AF1_WT", "sequence-type": "addgene-full", "addgene_id": "81954", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81954.addgene-full.gb" }, @@ -26794,7 +33701,10 @@ "plasmid_name": "pJW3.31", "sequence-type": "depositor-full", "addgene_id": "62865", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62865.depositor-full.gb" }, @@ -26803,7 +33713,10 @@ "plasmid_name": "pKG-GW1-MaUPPS-A", "sequence-type": "addgene-full", "addgene_id": "203174", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M117.806034", + "https://www.ncbi.nlm.nih.gov/pubmed/28842490" + ], "kit": null, "file": "data/addgene_plasmids/203174.addgene-full.gb" }, @@ -26812,7 +33725,10 @@ "plasmid_name": "W118-1_hZBTB7B_R363L", "sequence-type": "addgene-full", "addgene_id": "180381", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "file": "data/addgene_plasmids/180381.addgene-full.gb" }, @@ -26821,7 +33737,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL2 G116A", "sequence-type": "addgene-full", "addgene_id": "123104", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123104.addgene-full.gb" }, @@ -26830,7 +33749,10 @@ "plasmid_name": "pZA2", "sequence-type": "addgene-full", "addgene_id": "158480", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158480.addgene-full.gb" }, @@ -26839,7 +33761,10 @@ "plasmid_name": "pDONR223_Luciferase", "sequence-type": "depositor-full", "addgene_id": "25894", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "file": "data/addgene_plasmids/25894.depositor-full.gb" }, @@ -26848,7 +33773,10 @@ "plasmid_name": "pDONR221_SLC30A6", "sequence-type": "addgene-full", "addgene_id": "132065", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132065.addgene-full.gb" }, @@ -26857,7 +33785,10 @@ "plasmid_name": "TFORF3529", "sequence-type": "depositor-full", "addgene_id": "145005", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145005.depositor-full.gb" }, @@ -26866,7 +33797,6 @@ "plasmid_name": "R777-E035 Hs.DUSP2", "sequence-type": "depositor-full", "addgene_id": "70319", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -26878,7 +33808,6 @@ "plasmid_name": "pAGW-Fray", "sequence-type": "addgene-full", "addgene_id": "203979", - "references": [], "kit": null, "file": "data/addgene_plasmids/203979.addgene-full.gb" }, @@ -26887,7 +33816,10 @@ "plasmid_name": "pDONR223_PIK3R1_WT", "sequence-type": "addgene-full", "addgene_id": "82310", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82310.addgene-full.gb" }, @@ -26896,7 +33828,10 @@ "plasmid_name": "pDEST-hMeCP2-GFP-G273X", "sequence-type": "addgene-full", "addgene_id": "48080", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.038", + "https://www.ncbi.nlm.nih.gov/pubmed/23452848" + ], "kit": null, "file": "data/addgene_plasmids/48080.addgene-full.gb" }, @@ -26905,7 +33840,10 @@ "plasmid_name": "pLX304 YAP1", "sequence-type": "addgene-full", "addgene_id": "193689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193689.addgene-full.gb" }, @@ -26914,7 +33852,6 @@ "plasmid_name": "R777-E199 Hs.PRKAG1", "sequence-type": "depositor-full", "addgene_id": "70483", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -26926,7 +33863,10 @@ "plasmid_name": "pGWB442", "sequence-type": "depositor-full", "addgene_id": "74828", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74828.depositor-full.gb" }, @@ -26935,7 +33875,10 @@ "plasmid_name": "pAG305GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14330", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -26947,7 +33890,10 @@ "plasmid_name": "PE_30: Pxyl_lac_tet::eG:: sfYFP", "sequence-type": "addgene-full", "addgene_id": "104891", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104891.addgene-full.gb" }, @@ -26956,7 +33902,10 @@ "plasmid_name": "MSCV-CMV-DsRed-IRES-d4EGFP", "sequence-type": "addgene-full", "addgene_id": "41943", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1160489", + "https://www.ncbi.nlm.nih.gov/pubmed/18988847" + ], "kit": null, "file": "data/addgene_plasmids/41943.addgene-full.gb" }, @@ -26965,7 +33914,10 @@ "plasmid_name": "pDONR223-FGFR3", "sequence-type": "addgene-full", "addgene_id": "23933", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -26977,7 +33929,10 @@ "plasmid_name": "pHAGE-PIK3CA-G364R", "sequence-type": "addgene-full", "addgene_id": "116496", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116496.addgene-full.gb" }, @@ -26986,7 +33941,6 @@ "plasmid_name": "pENTR-L1R5-floxHygpA", "sequence-type": "addgene-full", "addgene_id": "139559", - "references": [], "kit": null, "file": "data/addgene_plasmids/139559.addgene-full.gb" }, @@ -26995,7 +33949,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-235", "sequence-type": "depositor-full", "addgene_id": "46660", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46660.depositor-full.gb" }, @@ -27004,7 +33961,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-GFP (gRNA: DHS-4D-1)", "sequence-type": "addgene-full", "addgene_id": "159662", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/159662.addgene-full.gb" }, @@ -27013,7 +33973,10 @@ "plasmid_name": "pDest-635", "sequence-type": "addgene-full", "addgene_id": "159582", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.107909", + "https://www.ncbi.nlm.nih.gov/pubmed/32697994" + ], "kit": null, "file": "data/addgene_plasmids/159582.addgene-full.gb" }, @@ -27022,7 +33985,10 @@ "plasmid_name": "pHAGE-POU4F2", "sequence-type": "addgene-full", "addgene_id": "116776", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116776.addgene-full.gb" }, @@ -27031,7 +33997,10 @@ "plasmid_name": "pDONR223-ZNF680", "sequence-type": "addgene-full", "addgene_id": "88455", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88455.addgene-full.gb" }, @@ -27040,7 +34009,9 @@ "plasmid_name": "pENTR4 genomic A. thaliana PLDGAMMA3", "sequence-type": "addgene-full", "addgene_id": "209188", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.09.25.558804" + ], "kit": null, "file": "data/addgene_plasmids/209188.addgene-full.gb" }, @@ -27049,7 +34020,10 @@ "plasmid_name": "pMDJ16 - pEXP[Peft-3 | mMaple3 (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159802", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159802.addgene-full.gb" }, @@ -27058,7 +34032,6 @@ "plasmid_name": "pAG416GAL10-c-Src", "sequence-type": "addgene-full", "addgene_id": "203462", - "references": [], "kit": null, "file": "data/addgene_plasmids/203462.addgene-full.gb" }, @@ -27067,7 +34040,6 @@ "plasmid_name": "R777-E073 Hs.EXOC4", "sequence-type": "depositor-full", "addgene_id": "70357", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -27079,7 +34051,10 @@ "plasmid_name": "pDONR1K18ms", "sequence-type": "depositor-full", "addgene_id": "72644", - "references": [], + "references": [ + "https://doi.org/10.1094/PHYTO-02-21-0057-R", + "https://www.ncbi.nlm.nih.gov/pubmed/34032522" + ], "kit": null, "file": "data/addgene_plasmids/72644.depositor-full.gb" }, @@ -27088,7 +34063,10 @@ "plasmid_name": "pGL2207", "sequence-type": "addgene-full", "addgene_id": "137048", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-9210-2_10", + "https://www.ncbi.nlm.nih.gov/pubmed/30980305" + ], "kit": null, "file": "data/addgene_plasmids/137048.addgene-full.gb" }, @@ -27097,7 +34075,10 @@ "plasmid_name": "pDONR223-CLK3", "sequence-type": "addgene-full", "addgene_id": "23753", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -27109,7 +34090,10 @@ "plasmid_name": "Tol2-LyzC-Rac-CA(guide resistant)-2a-mcherry-U6ac-Rac guides", "sequence-type": "addgene-full", "addgene_id": "168244", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "file": "data/addgene_plasmids/168244.addgene-full.gb" }, @@ -27118,7 +34102,6 @@ "plasmid_name": "CTNNB1 - W388S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216618", - "references": [], "kit": null, "file": "data/addgene_plasmids/216618.addgene-full.gb" }, @@ -27127,7 +34110,10 @@ "plasmid_name": "pSGE_475_S2-1-GATA_dCP", "sequence-type": "depositor-full", "addgene_id": "71155", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71155.depositor-full.gb" }, @@ -27136,7 +34122,10 @@ "plasmid_name": "pHAGE-PIK3CA-S629C", "sequence-type": "addgene-full", "addgene_id": "116542", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116542.addgene-full.gb" }, @@ -27145,7 +34134,10 @@ "plasmid_name": "pGWB524", "sequence-type": "depositor-full", "addgene_id": "74866", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74866.depositor-full.gb" }, @@ -27154,7 +34146,10 @@ "plasmid_name": "pEAHISPSVORF239", "sequence-type": "addgene-full", "addgene_id": "97025", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97025.addgene-full.gb" }, @@ -27175,7 +34170,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0401-luc2", "sequence-type": "addgene-full", "addgene_id": "214628", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214628.addgene-full.gb" }, @@ -27184,7 +34182,10 @@ "plasmid_name": "pLX302 LacZ-V5 puro", "sequence-type": "addgene-full", "addgene_id": "98579", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98579.addgene-full.gb" }, @@ -27193,7 +34194,10 @@ "plasmid_name": "pENTR_L1-YFP-Turbo-L2", "sequence-type": "addgene-full", "addgene_id": "127350", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127350.addgene-full.gb" }, @@ -27202,7 +34206,10 @@ "plasmid_name": "pDONR221-NIPAL1_STOP", "sequence-type": "addgene-full", "addgene_id": "161433", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161433.addgene-full.gb" }, @@ -27211,7 +34218,10 @@ "plasmid_name": "pENTR223-BRRF1", "sequence-type": "addgene-full", "addgene_id": "195796", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195796.addgene-full.gb" }, @@ -27220,7 +34230,10 @@ "plasmid_name": "C514-E13: attB5r-RU5u-His6-GST-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162955", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -27232,7 +34245,10 @@ "plasmid_name": "pCfB12708", "sequence-type": "addgene-full", "addgene_id": "212678", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymben.2024.09.003", + "https://www.ncbi.nlm.nih.gov/pubmed/39260817" + ], "kit": null, "file": "data/addgene_plasmids/212678.addgene-full.gb" }, @@ -27241,7 +34257,10 @@ "plasmid_name": "pENTR223-BFRF2", "sequence-type": "addgene-full", "addgene_id": "195822", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195822.addgene-full.gb" }, @@ -27250,7 +34269,10 @@ "plasmid_name": "pHAGE-PTH2-L22V", "sequence-type": "addgene-full", "addgene_id": "116639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116639.addgene-full.gb" }, @@ -27259,7 +34281,6 @@ "plasmid_name": "R777-E346 Hs.TFDP2-nostop", "sequence-type": "depositor-full", "addgene_id": "70630", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -27271,7 +34292,10 @@ "plasmid_name": "pPIP1;4-NLS-3xmCitrine", "sequence-type": "addgene-full", "addgene_id": "192524", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.112676", + "https://www.ncbi.nlm.nih.gov/pubmed/37342910" + ], "kit": null, "file": "data/addgene_plasmids/192524.addgene-full.gb" }, @@ -27280,7 +34304,10 @@ "plasmid_name": "pAG304GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14183", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -27292,7 +34319,10 @@ "plasmid_name": "pLCS99", "sequence-type": "addgene-full", "addgene_id": "209327", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209327.addgene-full.gb" }, @@ -27301,7 +34331,10 @@ "plasmid_name": "NCH2ec", "sequence-type": "addgene-full", "addgene_id": "131018", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "file": "data/addgene_plasmids/131018.addgene-full.gb" }, @@ -27310,7 +34343,10 @@ "plasmid_name": "pDONR221_SLC35B2", "sequence-type": "addgene-full", "addgene_id": "132251", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132251.addgene-full.gb" }, @@ -27319,7 +34355,10 @@ "plasmid_name": "RWDD2B_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176956", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176956.addgene-full.gb" }, @@ -27328,7 +34367,10 @@ "plasmid_name": "MAC_N_NFIB", "sequence-type": "addgene-full", "addgene_id": "167783", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167783.addgene-full.gb" }, @@ -27337,7 +34379,10 @@ "plasmid_name": "pDONR223_GRB10_WT", "sequence-type": "addgene-full", "addgene_id": "82124", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82124.addgene-full.gb" }, @@ -27346,7 +34391,10 @@ "plasmid_name": "pAd/CMV/V5-Clasp2\u03b1", "sequence-type": "addgene-full", "addgene_id": "89763", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.194662", + "https://www.ncbi.nlm.nih.gov/pubmed/28232523" + ], "kit": null, "file": "data/addgene_plasmids/89763.addgene-full.gb" }, @@ -27355,7 +34403,10 @@ "plasmid_name": "pLgw EcoDam-V5-SRF", "sequence-type": "addgene-full", "addgene_id": "98602", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98602.addgene-full.gb" }, @@ -27364,7 +34415,10 @@ "plasmid_name": "TERT", "sequence-type": "addgene-full", "addgene_id": "156078", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156078.addgene-full.gb" }, @@ -27373,7 +34427,6 @@ "plasmid_name": "EV-A71 3C protease; aliases: Enterovirus A71 3C protease, non cleavable C-term 6xHis tag", "sequence-type": "addgene-full", "addgene_id": "204816", - "references": [], "kit": null, "file": "data/addgene_plasmids/204816.addgene-full.gb" }, @@ -27382,7 +34435,10 @@ "plasmid_name": "W118-1_Flag-hIRAK1", "sequence-type": "addgene-full", "addgene_id": "180405", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180405.addgene-full.gb" }, @@ -27391,7 +34447,10 @@ "plasmid_name": "pDONR221-SLC41A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161332", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161332.depositor-full.gb" }, @@ -27400,7 +34459,10 @@ "plasmid_name": "pPB-cT3G-cERP2-MYC", "sequence-type": "addgene-full", "addgene_id": "192899", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192899.addgene-full.gb" }, @@ -27409,7 +34471,10 @@ "plasmid_name": "pDONR221_SLC39A1", "sequence-type": "addgene-full", "addgene_id": "132058", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132058.addgene-full.gb" }, @@ -27418,7 +34483,10 @@ "plasmid_name": "pDL111", "sequence-type": "addgene-full", "addgene_id": "175916", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175916.addgene-full.gb" }, @@ -27427,7 +34495,10 @@ "plasmid_name": "pDESTmycPABPC4", "sequence-type": "depositor-full", "addgene_id": "19877", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19877.depositor-full.gb" }, @@ -27436,7 +34507,10 @@ "plasmid_name": "MAC_N_AURKB", "sequence-type": "addgene-full", "addgene_id": "111682", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111682.addgene-full.gb" }, @@ -27445,7 +34519,6 @@ "plasmid_name": "pENTR_Hu MAD2(WT)", "sequence-type": "addgene-full", "addgene_id": "136343", - "references": [], "kit": null, "file": "data/addgene_plasmids/136343.addgene-full.gb" }, @@ -27454,7 +34527,10 @@ "plasmid_name": "pAB(EXPR-HDAC5-trun1)", "sequence-type": "addgene-full", "addgene_id": "114400", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114400.addgene-full.gb" }, @@ -27463,7 +34539,10 @@ "plasmid_name": "pDONR223_HRAS_p.G12D", "sequence-type": "addgene-full", "addgene_id": "81284", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -27475,7 +34554,6 @@ "plasmid_name": "pAG426GAL-SLEV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203510", - "references": [], "kit": null, "file": "data/addgene_plasmids/203510.addgene-full.gb" }, @@ -27484,7 +34562,10 @@ "plasmid_name": "1b34", "sequence-type": "addgene-full", "addgene_id": "177692", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "file": "data/addgene_plasmids/177692.addgene-full.gb" }, @@ -27493,7 +34574,10 @@ "plasmid_name": "pHAGE-MAP2K4-G294E", "sequence-type": "addgene-full", "addgene_id": "116430", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116430.addgene-full.gb" }, @@ -27502,7 +34586,10 @@ "plasmid_name": "pLEX307-mFzd5", "sequence-type": "addgene-full", "addgene_id": "102867", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "file": "data/addgene_plasmids/102867.addgene-full.gb" }, @@ -27511,7 +34598,6 @@ "plasmid_name": "R777-E283 Hs.ROCK1", "sequence-type": "depositor-full", "addgene_id": "70567", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -27523,7 +34609,9 @@ "plasmid_name": "p3E-FKBP-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82598", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82598.depositor-full.gb" }, @@ -27532,7 +34620,10 @@ "plasmid_name": "pMx/ATP8B4(E170Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209255", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209255.addgene-full.gb" }, @@ -27541,7 +34632,10 @@ "plasmid_name": "pTW325", "sequence-type": "addgene-full", "addgene_id": "115956", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115956.addgene-full.gb" }, @@ -27550,7 +34644,6 @@ "plasmid_name": "pENTR-HLA-B15-His", "sequence-type": "addgene-full", "addgene_id": "104837", - "references": [], "kit": null, "file": "data/addgene_plasmids/104837.addgene-full.gb" }, @@ -27559,7 +34652,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp7", "sequence-type": "depositor-full", "addgene_id": "168820", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168820.depositor-full.gb" }, @@ -27568,7 +34664,10 @@ "plasmid_name": "pDEST-APIGH", "sequence-type": "addgene-full", "addgene_id": "112804", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2011.10.036", + "https://www.ncbi.nlm.nih.gov/pubmed/22243747" + ], "kit": null, "file": "data/addgene_plasmids/112804.addgene-full.gb" }, @@ -27577,7 +34676,10 @@ "plasmid_name": "HJP-178-IVS-Syn21-CreAB-NrdJ-1N-WPREw", "sequence-type": "addgene-full", "addgene_id": "162473", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162473.addgene-full.gb" }, @@ -27586,7 +34688,10 @@ "plasmid_name": "pYPQ255", "sequence-type": "addgene-full", "addgene_id": "124310", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "file": "data/addgene_plasmids/124310.addgene-full.gb" }, @@ -27595,7 +34700,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-BRSK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135271", - "references": [], "kit": null, "file": "data/addgene_plasmids/135271.addgene-full.gb" }, @@ -27604,7 +34708,10 @@ "plasmid_name": "pCK072 p5E 147bp exorh:EGFP", "sequence-type": "addgene-full", "addgene_id": "195950", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195950.addgene-full.gb" }, @@ -27613,7 +34720,10 @@ "plasmid_name": "pDONR223_RHOA_p.T19N", "sequence-type": "addgene-full", "addgene_id": "82182", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82182.addgene-full.gb" }, @@ -27622,7 +34732,6 @@ "plasmid_name": "pAG426-GAL-Prepro-3x-Adan", "sequence-type": "addgene-full", "addgene_id": "181733", - "references": [], "kit": null, "file": "data/addgene_plasmids/181733.addgene-full.gb" }, @@ -27631,7 +34740,10 @@ "plasmid_name": "pGW-GFP-TurboID-GOI", "sequence-type": "addgene-full", "addgene_id": "209381", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "file": "data/addgene_plasmids/209381.addgene-full.gb" }, @@ -27640,7 +34752,10 @@ "plasmid_name": "pENTR223-CMV-Cre-U6-sgKdm6a#4-U6-sgRb1-U6-sgTrp53-U6-sgRbl2", "sequence-type": "addgene-full", "addgene_id": "209061", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-023-01210-z", + "https://www.ncbi.nlm.nih.gov/pubmed/37591951" + ], "kit": null, "file": "data/addgene_plasmids/209061.addgene-full.gb" }, @@ -27649,7 +34764,10 @@ "plasmid_name": "pDONR221_SLC39A13", "sequence-type": "addgene-full", "addgene_id": "132117", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132117.addgene-full.gb" }, @@ -27658,7 +34776,10 @@ "plasmid_name": "pDONR223 LC3B2 G120A", "sequence-type": "addgene-full", "addgene_id": "123076", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123076.addgene-full.gb" }, @@ -27667,7 +34788,10 @@ "plasmid_name": "pLX_TRC311 ETV4-L", "sequence-type": "depositor-full", "addgene_id": "74982", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/28178529" + ], "kit": null, "file": "data/addgene_plasmids/74982.depositor-full.gb" }, @@ -27676,7 +34800,6 @@ "plasmid_name": "R777-E245 Hs.RASGRP2", "sequence-type": "depositor-full", "addgene_id": "70529", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -27688,7 +34811,10 @@ "plasmid_name": "MSCVpuro-6xHis_SUMO2", "sequence-type": "addgene-full", "addgene_id": "164938", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "file": "data/addgene_plasmids/164938.addgene-full.gb" }, @@ -27697,7 +34823,10 @@ "plasmid_name": "pTag4C_SP-HTR2A-V2R-NTEV-tcs-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "214615", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214615.addgene-full.gb" }, @@ -27706,7 +34835,10 @@ "plasmid_name": "pDONR223_CCND1_WT", "sequence-type": "addgene-full", "addgene_id": "82262", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82262.addgene-full.gb" }, @@ -27715,7 +34847,10 @@ "plasmid_name": "pCMB-TMEr", "sequence-type": "depositor-full", "addgene_id": "61208", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61208.depositor-full.gb" }, @@ -27724,7 +34859,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 CC3D", "sequence-type": "addgene-full", "addgene_id": "175776", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175776.addgene-full.gb" }, @@ -27733,7 +34871,10 @@ "plasmid_name": "pDONR221-SLC25A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161181", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161181.depositor-full.gb" }, @@ -27742,7 +34883,10 @@ "plasmid_name": "C515-E01: attB5r-stuffer-attB1r", "sequence-type": "addgene-full", "addgene_id": "162968", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -27754,7 +34898,10 @@ "plasmid_name": "pENTR mCherry L1-R5", "sequence-type": "depositor-full", "addgene_id": "43963", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "file": "data/addgene_plasmids/43963.depositor-full.gb" }, @@ -27763,7 +34910,10 @@ "plasmid_name": "pcDNA5FRT/TO-FAF1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113486", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113486.addgene-full.gb" }, @@ -27772,7 +34922,10 @@ "plasmid_name": "GFP-BRD2", "sequence-type": "addgene-full", "addgene_id": "65376", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65376.addgene-full.gb" }, @@ -27781,7 +34934,10 @@ "plasmid_name": "pENTR-L1-PGK-HygTK-L2", "sequence-type": "addgene-full", "addgene_id": "141006", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141006.addgene-full.gb" }, @@ -27790,7 +34946,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-STK3", "sequence-type": "addgene-full", "addgene_id": "172990", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172990.addgene-full.gb" }, @@ -27799,7 +34958,10 @@ "plasmid_name": "pHAGE-PIK3R1-R386*", "sequence-type": "addgene-full", "addgene_id": "116604", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116604.addgene-full.gb" }, @@ -27808,7 +34970,10 @@ "plasmid_name": "pDONR223_GNA13_p.L374I", "sequence-type": "addgene-full", "addgene_id": "81350", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -27820,7 +34985,10 @@ "plasmid_name": "MAC_C_EPHB6", "sequence-type": "addgene-full", "addgene_id": "187763", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187763.addgene-full.gb" }, @@ -27829,7 +34997,10 @@ "plasmid_name": "pDestTol2CG2-Neurog1-Magneto2.0-p2A-mCherry-pA", "sequence-type": "depositor-full", "addgene_id": "74302", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4265", + "https://www.ncbi.nlm.nih.gov/pubmed/26950006" + ], "kit": null, "file": "data/addgene_plasmids/74302.depositor-full.gb" }, @@ -27838,7 +35009,10 @@ "plasmid_name": "pLentiPGK Blast DEST ERKKTRmRuby2", "sequence-type": "addgene-full", "addgene_id": "90231", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "file": "data/addgene_plasmids/90231.addgene-full.gb" }, @@ -27847,7 +35021,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TESK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170614", - "references": [], "kit": null, "file": "data/addgene_plasmids/170614.addgene-full.gb" }, @@ -27856,7 +35029,10 @@ "plasmid_name": "pENTR/pSM2(CMV) GFP (w513-1)", "sequence-type": "depositor-full", "addgene_id": "19170", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/19170.depositor-full.gb" }, @@ -27865,7 +35041,10 @@ "plasmid_name": "pDONR223_ZBTB24_WT", "sequence-type": "addgene-full", "addgene_id": "82887", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82887.addgene-full.gb" }, @@ -27874,7 +35053,10 @@ "plasmid_name": "pDONR223_CCND1_p.E172K", "sequence-type": "addgene-full", "addgene_id": "82733", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -27886,7 +35068,6 @@ "plasmid_name": "R777-E103 Hs.ICMT", "sequence-type": "depositor-full", "addgene_id": "70387", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -27898,7 +35079,9 @@ "plasmid_name": "pDRFLIP39", "sequence-type": "depositor-full", "addgene_id": "65517", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65517.depositor-full.gb" }, @@ -27907,7 +35090,10 @@ "plasmid_name": "pSLIK BirA* 3xFLAG-NUP37 zeo", "sequence-type": "addgene-full", "addgene_id": "192333", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192333.addgene-full.gb" }, @@ -27916,7 +35102,10 @@ "plasmid_name": "pSGE_900_Nhe2_EcR-to-gl_RB", "sequence-type": "depositor-full", "addgene_id": "71185", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71185.depositor-full.gb" }, @@ -27925,7 +35114,10 @@ "plasmid_name": "pLD-puro-Cc-CR-PARK7WT-VA", "sequence-type": "addgene-full", "addgene_id": "115187", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115187.addgene-full.gb" }, @@ -27934,7 +35126,6 @@ "plasmid_name": "pTRIPZ-NUDT18-C-FLAG-Puro", "sequence-type": "addgene-full", "addgene_id": "195181", - "references": [], "kit": null, "file": "data/addgene_plasmids/195181.addgene-full.gb" }, @@ -27943,7 +35134,6 @@ "plasmid_name": "pINDUCER20-hMYOD1-3xHA (#730)", "sequence-type": "addgene-full", "addgene_id": "78328", - "references": [], "kit": null, "file": "data/addgene_plasmids/78328.addgene-full.gb" }, @@ -27952,7 +35142,10 @@ "plasmid_name": "pFPL-Ch", "sequence-type": "addgene-full", "addgene_id": "61647", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-05-14-0144-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/25390188" + ], "kit": null, "file": "data/addgene_plasmids/61647.addgene-full.gb" }, @@ -27961,7 +35154,10 @@ "plasmid_name": "pDONR223_RASA1_p.E510K", "sequence-type": "addgene-full", "addgene_id": "81601", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -27973,7 +35169,10 @@ "plasmid_name": "pCSF107mT-GATEWAY-3'-Myc tag", "sequence-type": "addgene-full", "addgene_id": "67617", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2015.09.004", + "https://www.ncbi.nlm.nih.gov/pubmed/26391338" + ], "kit": null, "file": "data/addgene_plasmids/67617.addgene-full.gb" }, @@ -27982,7 +35181,10 @@ "plasmid_name": "pDONR221-SLC39A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161224", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161224.addgene-full.gb" }, @@ -27991,7 +35193,10 @@ "plasmid_name": "pGAPi", "sequence-type": "addgene-full", "addgene_id": "127547", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.20.00865", + "https://www.ncbi.nlm.nih.gov/pubmed/32764132" + ], "kit": null, "file": "data/addgene_plasmids/127547.addgene-full.gb" }, @@ -28000,7 +35205,10 @@ "plasmid_name": "ph2b", "sequence-type": "depositor-full", "addgene_id": "32109", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1002161", + "https://www.ncbi.nlm.nih.gov/pubmed/21829355" + ], "kit": null, "file": "data/addgene_plasmids/32109.depositor-full.gb" }, @@ -28009,7 +35217,6 @@ "plasmid_name": "pT2-bactin:QF2,crybb:CFP", "sequence-type": "addgene-full", "addgene_id": "125697", - "references": [], "kit": null, "file": "data/addgene_plasmids/125697.addgene-full.gb" }, @@ -28018,7 +35225,10 @@ "plasmid_name": "TFORF2959", "sequence-type": "addgene-full", "addgene_id": "144435", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144435.addgene-full.gb" }, @@ -28027,7 +35237,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-C-mCherry", "sequence-type": "addgene-full", "addgene_id": "223952", - "references": [], "kit": null, "file": "data/addgene_plasmids/223952.addgene-full.gb" }, @@ -28036,7 +35245,10 @@ "plasmid_name": "pDONR221_SLC12A3", "sequence-type": "addgene-full", "addgene_id": "131920", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131920.addgene-full.gb" }, @@ -28045,7 +35257,6 @@ "plasmid_name": "pLenti6.3/NS3", "sequence-type": "addgene-full", "addgene_id": "120841", - "references": [], "kit": null, "file": "data/addgene_plasmids/120841.addgene-full.gb" }, @@ -28054,7 +35265,10 @@ "plasmid_name": "TFORF3385", "sequence-type": "addgene-full", "addgene_id": "144861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144861.addgene-full.gb" }, @@ -28063,7 +35277,10 @@ "plasmid_name": "PB-TAC-ERP2", "sequence-type": "addgene-full", "addgene_id": "80478", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "file": "data/addgene_plasmids/80478.addgene-full.gb" }, @@ -28072,7 +35289,10 @@ "plasmid_name": "pcDNA3_SP-DRD2-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194363", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194363.addgene-full.gb" }, @@ -28081,7 +35301,10 @@ "plasmid_name": "pCFJ1002", "sequence-type": "depositor-full", "addgene_id": "44477", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44477.depositor-full.gb" }, @@ -28090,7 +35313,10 @@ "plasmid_name": "pEF.DEST51-mVenus", "sequence-type": "addgene-full", "addgene_id": "154899", - "references": [], + "references": [ + "https://doi.org/10.1038/s41388-020-01604-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33420373" + ], "kit": null, "file": "data/addgene_plasmids/154899.addgene-full.gb" }, @@ -28099,7 +35325,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep128", "sequence-type": "addgene-full", "addgene_id": "136872", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136872.addgene-full.gb" }, @@ -28108,7 +35337,10 @@ "plasmid_name": "pHAGE-BRAF-G615R", "sequence-type": "addgene-full", "addgene_id": "116161", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116161.addgene-full.gb" }, @@ -28117,7 +35349,6 @@ "plasmid_name": "pVP16-tev-PRT1", "sequence-type": "addgene-full", "addgene_id": "83405", - "references": [], "kit": null, "file": "data/addgene_plasmids/83405.addgene-full.gb" }, @@ -28126,7 +35357,10 @@ "plasmid_name": "CPSF5", "sequence-type": "addgene-full", "addgene_id": "155480", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155480.addgene-full.gb" }, @@ -28135,7 +35369,6 @@ "plasmid_name": "p667-UBC-PNCK-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189897", - "references": [], "kit": null, "file": "data/addgene_plasmids/189897.addgene-full.gb" }, @@ -28144,7 +35377,10 @@ "plasmid_name": "pHAGE-RNF8-R42A", "sequence-type": "addgene-full", "addgene_id": "221702", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-023-01192-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37468549" + ], "kit": null, "file": "data/addgene_plasmids/221702.addgene-full.gb" }, @@ -28153,7 +35389,10 @@ "plasmid_name": "pEZYeGFP-SARS-CoV-2E", "sequence-type": "addgene-full", "addgene_id": "224580", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms241612793", + "https://www.ncbi.nlm.nih.gov/pubmed/37628973" + ], "kit": null, "file": "data/addgene_plasmids/224580.addgene-full.gb" }, @@ -28162,7 +35401,10 @@ "plasmid_name": "pENTR{FRT-RC}", "sequence-type": "addgene-full", "addgene_id": "182164", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182164.addgene-full.gb" }, @@ -28171,7 +35413,10 @@ "plasmid_name": "pDONR223_GABRA6_WT", "sequence-type": "addgene-full", "addgene_id": "81861", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -28183,7 +35428,10 @@ "plasmid_name": "p7126 pHAGE-P-CMVt-N-HA-GAW-FTH1", "sequence-type": "addgene-full", "addgene_id": "100152", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100152.addgene-full.gb" }, @@ -28192,7 +35440,6 @@ "plasmid_name": "R777-E169 Hs.PIK3CG", "sequence-type": "depositor-full", "addgene_id": "70453", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -28204,7 +35451,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF10wu_nostop", "sequence-type": "addgene-full", "addgene_id": "152986", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/152986.addgene-full.gb" }, @@ -28213,7 +35463,9 @@ "plasmid_name": "pRRLHygro-pEF1a-p53ashL344A-mKate2-splitmVenusC", "sequence-type": "depositor-full", "addgene_id": "69585", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "file": "data/addgene_plasmids/69585.depositor-full.gb" }, @@ -28222,7 +35474,10 @@ "plasmid_name": "pMuLE ENTR H1 L1-L4", "sequence-type": "depositor-full", "addgene_id": "62104", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62104.depositor-full.gb" }, @@ -28231,7 +35486,10 @@ "plasmid_name": "pDONR223_IRF4_p.R96L", "sequence-type": "addgene-full", "addgene_id": "81435", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -28243,7 +35501,10 @@ "plasmid_name": "p3E-rab8a", "sequence-type": "addgene-full", "addgene_id": "109725", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109725.addgene-full.gb" }, @@ -28252,7 +35513,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 NSP1_stop", "sequence-type": "addgene-full", "addgene_id": "168587", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168587.addgene-full.gb" }, @@ -28261,7 +35525,10 @@ "plasmid_name": "TFORF3125", "sequence-type": "addgene-full", "addgene_id": "144601", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144601.addgene-full.gb" }, @@ -28270,7 +35537,10 @@ "plasmid_name": "pENTRegfp3", "sequence-type": "depositor-full", "addgene_id": "22464", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/22464.depositor-full.gb" }, @@ -28279,7 +35549,9 @@ "plasmid_name": "pAG426GAL-ccdB-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166142", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166142.addgene-full.gb" }, @@ -28288,7 +35560,10 @@ "plasmid_name": "Active Wnt8B-V5", "sequence-type": "depositor-full", "addgene_id": "43819", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43819.depositor-full.gb" }, @@ -28297,7 +35572,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDKL3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158177", - "references": [], "kit": null, "file": "data/addgene_plasmids/158177.addgene-full.gb" }, @@ -28306,7 +35580,10 @@ "plasmid_name": "pBi2FC-C-GRF4-P2A:mTagBFP2", "sequence-type": "addgene-full", "addgene_id": "216140", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216140.addgene-full.gb" }, @@ -28315,7 +35592,10 @@ "plasmid_name": "pMSCVneo-DEST", "sequence-type": "addgene-full", "addgene_id": "119746", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.3451", + "https://www.ncbi.nlm.nih.gov/pubmed/26595769" + ], "kit": null, "file": "data/addgene_plasmids/119746.addgene-full.gb" }, @@ -28324,7 +35604,10 @@ "plasmid_name": "pDONR223_AKR1B1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82953", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82953.addgene-full.gb" }, @@ -28333,7 +35616,10 @@ "plasmid_name": "p5E-4xnrUAS (L4-R1)", "sequence-type": "depositor-full", "addgene_id": "61372", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2011.01.002", + "https://www.ncbi.nlm.nih.gov/pubmed/21223961" + ], "kit": null, "file": "data/addgene_plasmids/61372.depositor-full.gb" }, @@ -28342,7 +35628,10 @@ "plasmid_name": "KW701: pMVP (L5-L4) AID", "sequence-type": "addgene-full", "addgene_id": "121723", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121723.addgene-full.gb" }, @@ -28351,7 +35640,10 @@ "plasmid_name": "pDONR223_NKX2-5", "sequence-type": "addgene-full", "addgene_id": "221479", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221479.addgene-full.gb" }, @@ -28360,7 +35652,10 @@ "plasmid_name": "pMMK ENTR 1 CMV mAG beta-catenin", "sequence-type": "addgene-full", "addgene_id": "206258", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206258.addgene-full.gb" }, @@ -28369,7 +35664,6 @@ "plasmid_name": "Hs.KRAS4b Q61L", "sequence-type": "depositor-full", "addgene_id": "83134", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -28381,7 +35675,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp2", "sequence-type": "addgene-full", "addgene_id": "168948", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168948.addgene-full.gb" }, @@ -28390,7 +35687,10 @@ "plasmid_name": "pLenti-EF1a-Ngn3ER-PuroR-mCherry", "sequence-type": "addgene-full", "addgene_id": "197385", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-023-01130-y", + "https://www.ncbi.nlm.nih.gov/pubmed/37106062" + ], "kit": null, "file": "data/addgene_plasmids/197385.addgene-full.gb" }, @@ -28399,7 +35699,10 @@ "plasmid_name": "pENTR-JNKKTRClover", "sequence-type": "depositor-full", "addgene_id": "59139", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59139.depositor-full.gb" }, @@ -28408,7 +35711,10 @@ "plasmid_name": "pDONR223_RB1_p.I782M", "sequence-type": "addgene-full", "addgene_id": "81547", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -28420,7 +35726,10 @@ "plasmid_name": "pDONR221-SLC26A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161162", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161162.addgene-full.gb" }, @@ -28429,7 +35738,10 @@ "plasmid_name": "TFORF3297", "sequence-type": "addgene-full", "addgene_id": "144773", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144773.addgene-full.gb" }, @@ -28438,7 +35750,10 @@ "plasmid_name": "pENTR-ZmIAA2", "sequence-type": "addgene-full", "addgene_id": "188428", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188428.addgene-full.gb" }, @@ -28447,7 +35762,10 @@ "plasmid_name": "actc1b-mKate2-rab8a", "sequence-type": "addgene-full", "addgene_id": "109657", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109657.addgene-full.gb" }, @@ -28456,7 +35774,10 @@ "plasmid_name": "pDONR221_SLC1A6", "sequence-type": "addgene-full", "addgene_id": "131986", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131986.addgene-full.gb" }, @@ -28465,7 +35786,10 @@ "plasmid_name": "pDONR221-LETM2_STOP", "sequence-type": "depositor-full", "addgene_id": "161436", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161436.depositor-full.gb" }, @@ -28474,7 +35798,10 @@ "plasmid_name": "TFORF3017", "sequence-type": "addgene-full", "addgene_id": "144493", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144493.addgene-full.gb" }, @@ -28483,7 +35810,10 @@ "plasmid_name": "pDONR221-SLC27A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161282", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161282.addgene-full.gb" }, @@ -28492,7 +35822,10 @@ "plasmid_name": "5'-3xFLAG Kansl3-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212052", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212052.addgene-full.gb" }, @@ -28501,7 +35834,10 @@ "plasmid_name": "pDONR221-kcnj4", "sequence-type": "addgene-full", "addgene_id": "173131", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173131.addgene-full.gb" }, @@ -28510,7 +35846,10 @@ "plasmid_name": "pBS L30 Flag-Apex-Rab7A", "sequence-type": "addgene-full", "addgene_id": "135652", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.aba7803", + "https://www.ncbi.nlm.nih.gov/pubmed/33523982" + ], "kit": null, "file": "data/addgene_plasmids/135652.addgene-full.gb" }, @@ -28519,7 +35858,10 @@ "plasmid_name": "pDONR221-SLC25A38_STOP", "sequence-type": "addgene-full", "addgene_id": "161219", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161219.addgene-full.gb" }, @@ -28528,7 +35870,10 @@ "plasmid_name": "TFORF2932", "sequence-type": "addgene-full", "addgene_id": "144408", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144408.addgene-full.gb" }, @@ -28537,7 +35882,10 @@ "plasmid_name": "pLenti_EF1a_Flag_TP53_R248W", "sequence-type": "addgene-full", "addgene_id": "183114", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "file": "data/addgene_plasmids/183114.addgene-full.gb" }, @@ -28546,7 +35894,10 @@ "plasmid_name": "MAC_N_COMMD3", "sequence-type": "addgene-full", "addgene_id": "209676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209676.addgene-full.gb" }, @@ -28555,7 +35906,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-Swa1::RfA", "sequence-type": "addgene-full", "addgene_id": "186396", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186396.addgene-full.gb" }, @@ -28564,7 +35918,10 @@ "plasmid_name": "pSLIK-IDH2-R172K-FLAG", "sequence-type": "addgene-full", "addgene_id": "66807", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + ], "kit": null, "file": "data/addgene_plasmids/66807.addgene-full.gb" }, @@ -28573,7 +35930,10 @@ "plasmid_name": "pGL3-Gateway-DSCP", "sequence-type": "depositor-full", "addgene_id": "71506", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1232542", + "https://www.ncbi.nlm.nih.gov/pubmed/23328393" + ], "kit": null, "file": "data/addgene_plasmids/71506.depositor-full.gb" }, @@ -28582,7 +35942,10 @@ "plasmid_name": "pHAGE-ESR1-E380Q", "sequence-type": "addgene-full", "addgene_id": "116368", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116368.addgene-full.gb" }, @@ -28591,7 +35954,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-H2B-mCherry (dual gRNA: Olig2 x2)", "sequence-type": "addgene-full", "addgene_id": "171101", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/171101.addgene-full.gb" }, @@ -28600,7 +35966,10 @@ "plasmid_name": "pDONR223_ZBTB24_p.Q669R", "sequence-type": "addgene-full", "addgene_id": "82795", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82795.addgene-full.gb" }, @@ -28609,7 +35978,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.S45F", "sequence-type": "addgene-full", "addgene_id": "82821", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82821.addgene-full.gb" }, @@ -28618,7 +35990,10 @@ "plasmid_name": "pENTR D-TOPO-C3_26", "sequence-type": "depositor-full", "addgene_id": "60269", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60269.depositor-full.gb" }, @@ -28627,7 +36002,9 @@ "plasmid_name": "pPB-cT3G-cERP2-PAX6a", "sequence-type": "addgene-full", "addgene_id": "222576", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222576.addgene-full.gb" }, @@ -28636,7 +36013,6 @@ "plasmid_name": "pEF 1-2x35S-4", "sequence-type": "depositor-full", "addgene_id": "20093", - "references": [], "kit": null, "file": "data/addgene_plasmids/20093.depositor-full.gb" }, @@ -28645,7 +36021,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.A79V", "sequence-type": "addgene-full", "addgene_id": "81408", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -28657,7 +36036,9 @@ "plasmid_name": "pMpGWB335", "sequence-type": "depositor-full", "addgene_id": "68663", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68663.depositor-full.gb" }, @@ -28666,7 +36047,10 @@ "plasmid_name": "LA601: pMVP (L3-L2) P2A-Puro + WPRE", "sequence-type": "addgene-full", "addgene_id": "121785", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121785.addgene-full.gb" }, @@ -28675,7 +36059,10 @@ "plasmid_name": "KQ403: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS-LSD1", "sequence-type": "addgene-full", "addgene_id": "121831", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121831.addgene-full.gb" }, @@ -28684,7 +36071,10 @@ "plasmid_name": "pAG426GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14204", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -28696,7 +36086,10 @@ "plasmid_name": "pLenti6.3/TO/V5-DEST-IGFBP2-Clover", "sequence-type": "addgene-full", "addgene_id": "191008", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg1840", + "https://www.ncbi.nlm.nih.gov/pubmed/37436978" + ], "kit": null, "file": "data/addgene_plasmids/191008.addgene-full.gb" }, @@ -28705,7 +36098,10 @@ "plasmid_name": "p3E-rab5b", "sequence-type": "addgene-full", "addgene_id": "109718", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109718.addgene-full.gb" }, @@ -28714,7 +36110,10 @@ "plasmid_name": "pEX-SP-CFP-STIM1(23-685)", "sequence-type": "depositor-full", "addgene_id": "18858", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2005.05.055", + "https://www.ncbi.nlm.nih.gov/pubmed/16005298" + ], "kit": null, "file": "data/addgene_plasmids/18858.depositor-full.gb" }, @@ -28723,7 +36122,10 @@ "plasmid_name": "pHAGE-DDX3X-S412F", "sequence-type": "addgene-full", "addgene_id": "116227", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116227.addgene-full.gb" }, @@ -28732,7 +36134,10 @@ "plasmid_name": "pLVX-UBE3B-HA-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107346", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "file": "data/addgene_plasmids/107346.addgene-full.gb" }, @@ -28741,7 +36146,10 @@ "plasmid_name": "TFORF3437", "sequence-type": "addgene-full", "addgene_id": "144913", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144913.addgene-full.gb" }, @@ -28750,7 +36158,9 @@ "plasmid_name": "p3E-P2A-GFP no-pA", "sequence-type": "depositor-full", "addgene_id": "80826", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80826.depositor-full.gb" }, @@ -28759,7 +36169,6 @@ "plasmid_name": "p41Neo 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58545", - "references": [], "kit": null, "file": "data/addgene_plasmids/58545.depositor-full.gb" }, @@ -28768,7 +36177,10 @@ "plasmid_name": "pDONR221-SLC43A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161356", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161356.addgene-full.gb" }, @@ -28777,7 +36189,9 @@ "plasmid_name": "p3E-EF1a-pA (JDW 1222)", "sequence-type": "addgene-full", "addgene_id": "224526", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224526.addgene-full.gb" }, @@ -28786,7 +36200,10 @@ "plasmid_name": "pMMDS 2 colors", "sequence-type": "addgene-full", "addgene_id": "206265", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206265.addgene-full.gb" }, @@ -28807,7 +36224,10 @@ "plasmid_name": "pEF5B-FRT-AP-Smo-YFP-DEST", "sequence-type": "depositor-full", "addgene_id": "49099", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.00654", + "https://www.ncbi.nlm.nih.gov/pubmed/23930224" + ], "kit": null, "file": "data/addgene_plasmids/49099.depositor-full.gb" }, @@ -28816,7 +36236,10 @@ "plasmid_name": "pDONR223_KIR3DL2_WT", "sequence-type": "addgene-full", "addgene_id": "81773", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -28828,7 +36251,10 @@ "plasmid_name": "TFORF3071", "sequence-type": "addgene-full", "addgene_id": "144547", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144547.addgene-full.gb" }, @@ -28837,7 +36263,9 @@ "plasmid_name": "pDONR221-RPS10", "sequence-type": "addgene-full", "addgene_id": "166204", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166204.addgene-full.gb" }, @@ -28846,7 +36274,9 @@ "plasmid_name": "AAV-CMV-TetRC-2A-Tomato-bGHpA;U6_BsaI-sgRNA", "sequence-type": "addgene-full", "addgene_id": "177365", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-1065603/v1" + ], "kit": null, "file": "data/addgene_plasmids/177365.addgene-full.gb" }, @@ -28855,7 +36285,10 @@ "plasmid_name": "pLV-mCherry-FKBP-TIAM1(DHPH)", "sequence-type": "addgene-full", "addgene_id": "176138", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.84364", + "https://www.ncbi.nlm.nih.gov/pubmed/37449837" + ], "kit": null, "file": "data/addgene_plasmids/176138.addgene-full.gb" }, @@ -28864,7 +36297,6 @@ "plasmid_name": "R777-E117 Hs.KSR1", "sequence-type": "depositor-full", "addgene_id": "70401", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -28876,7 +36308,10 @@ "plasmid_name": "pMuLE ENTR CMV iRFP L1-R5", "sequence-type": "depositor-full", "addgene_id": "62156", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62156.depositor-full.gb" }, @@ -28885,7 +36320,10 @@ "plasmid_name": "TFORF3461", "sequence-type": "addgene-full", "addgene_id": "144937", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144937.addgene-full.gb" }, @@ -28894,7 +36332,10 @@ "plasmid_name": "362 pCS Cherry DEST", "sequence-type": "depositor-full", "addgene_id": "13075", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/13075.depositor-full.gb" }, @@ -28903,7 +36344,10 @@ "plasmid_name": "pHAGE-BRAF-V600_K601delinsE", "sequence-type": "addgene-full", "addgene_id": "116203", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116203.addgene-full.gb" }, @@ -28912,7 +36356,10 @@ "plasmid_name": "pDONR221_SLC16A9", "sequence-type": "addgene-full", "addgene_id": "131876", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131876.addgene-full.gb" }, @@ -28921,7 +36368,10 @@ "plasmid_name": "TFORF3207", "sequence-type": "addgene-full", "addgene_id": "144683", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144683.addgene-full.gb" }, @@ -28930,7 +36380,10 @@ "plasmid_name": "TFORF3087", "sequence-type": "addgene-full", "addgene_id": "144563", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144563.addgene-full.gb" }, @@ -28939,7 +36392,10 @@ "plasmid_name": "ALDH18A1", "sequence-type": "addgene-full", "addgene_id": "155402", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155402.addgene-full.gb" }, @@ -28948,7 +36404,10 @@ "plasmid_name": "pDEST17-UbE2H", "sequence-type": "addgene-full", "addgene_id": "15752", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "file": "data/addgene_plasmids/15752.addgene-full.gb" }, @@ -28957,7 +36416,10 @@ "plasmid_name": "pEntry_HCoV-OC43-Spike", "sequence-type": "addgene-full", "addgene_id": "168951", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168951.addgene-full.gb" }, @@ -28966,7 +36428,9 @@ "plasmid_name": "pDONR221-VPS35", "sequence-type": "addgene-full", "addgene_id": "166220", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166220.addgene-full.gb" }, @@ -28975,7 +36439,9 @@ "plasmid_name": "pME-mScarlet3-Giantin (JDW 1356)", "sequence-type": "addgene-full", "addgene_id": "224502", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224502.addgene-full.gb" }, @@ -28984,7 +36450,10 @@ "plasmid_name": "pDONR221-SLC5A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161372", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161372.addgene-full.gb" }, @@ -28993,7 +36462,10 @@ "plasmid_name": "pJG80", "sequence-type": "depositor-full", "addgene_id": "89282", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.13446", + "https://www.ncbi.nlm.nih.gov/pubmed/27943461" + ], "kit": null, "file": "data/addgene_plasmids/89282.depositor-full.gb" }, @@ -29002,7 +36474,10 @@ "plasmid_name": "pDONR223_HAPLN1_WT", "sequence-type": "addgene-full", "addgene_id": "81757", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29026,7 +36501,10 @@ "plasmid_name": "pDONR221-SLC34A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161254", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161254.depositor-full.gb" }, @@ -29035,7 +36513,10 @@ "plasmid_name": "pDONR223_FAM200A_WT", "sequence-type": "addgene-full", "addgene_id": "81878", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29047,7 +36528,10 @@ "plasmid_name": "A1-LCD-30G+30S+7F-7Y", "sequence-type": "addgene-full", "addgene_id": "178686", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178686.addgene-full.gb" }, @@ -29056,7 +36540,6 @@ "plasmid_name": "Hs.KRAS4a", "sequence-type": "depositor-full", "addgene_id": "83166", - "references": [], "kit": null, "file": "data/addgene_plasmids/83166.depositor-full.gb" }, @@ -29065,7 +36548,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SAP30", "sequence-type": "addgene-full", "addgene_id": "222552", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222552.addgene-full.gb" }, @@ -29074,7 +36559,10 @@ "plasmid_name": "DCP2", "sequence-type": "addgene-full", "addgene_id": "155499", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155499.addgene-full.gb" }, @@ -29083,7 +36571,10 @@ "plasmid_name": "pHAGE-BRAF-L597R", "sequence-type": "addgene-full", "addgene_id": "116178", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116178.addgene-full.gb" }, @@ -29092,7 +36583,10 @@ "plasmid_name": "pHAGE-EGFR-R776G", "sequence-type": "addgene-full", "addgene_id": "116298", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116298.addgene-full.gb" }, @@ -29101,7 +36595,10 @@ "plasmid_name": "pDEST-hisMBP-AsCpf1-EC", "sequence-type": "addgene-full", "addgene_id": "79007", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt.3596", + "https://www.ncbi.nlm.nih.gov/pubmed/27272385" + ], "kit": null, "file": "data/addgene_plasmids/79007.addgene-full.gb" }, @@ -29110,7 +36607,10 @@ "plasmid_name": "pBullet-tgn-c", "sequence-type": "depositor-full", "addgene_id": "53072", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53072.depositor-full.gb" }, @@ -29119,7 +36619,10 @@ "plasmid_name": "pYPQ230-RRV", "sequence-type": "addgene-full", "addgene_id": "188543", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02929-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37122009" + ], "kit": null, "file": "data/addgene_plasmids/188543.addgene-full.gb" }, @@ -29128,7 +36631,10 @@ "plasmid_name": "pCM5.43", "sequence-type": "depositor-full", "addgene_id": "19391", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19391.depositor-full.gb" }, @@ -29137,7 +36643,10 @@ "plasmid_name": "TFORF3142", "sequence-type": "addgene-full", "addgene_id": "144618", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144618.addgene-full.gb" }, @@ -29146,7 +36655,10 @@ "plasmid_name": "pEntry_HCoV-OC43-Membrane", "sequence-type": "depositor-full", "addgene_id": "168946", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168946.depositor-full.gb" }, @@ -29155,7 +36667,10 @@ "plasmid_name": "pNSA-FLUC", "sequence-type": "addgene-full", "addgene_id": "98143", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.14314", + "https://www.ncbi.nlm.nih.gov/pubmed/30883973" + ], "kit": null, "file": "data/addgene_plasmids/98143.addgene-full.gb" }, @@ -29164,7 +36679,10 @@ "plasmid_name": "JI601: pMAGIC (L1-R5) hU6::SaCas9 gRNA scaffold; RIP", "sequence-type": "addgene-full", "addgene_id": "121815", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121815.addgene-full.gb" }, @@ -29173,7 +36691,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_RBD -N501Y", "sequence-type": "addgene-full", "addgene_id": "169407", - "references": [], "kit": null, "file": "data/addgene_plasmids/169407.addgene-full.gb" }, @@ -29182,7 +36699,10 @@ "plasmid_name": "actc1b-mKate2-EEA1", "sequence-type": "addgene-full", "addgene_id": "109508", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109508.addgene-full.gb" }, @@ -29191,7 +36711,10 @@ "plasmid_name": "W118-1_eGFP", "sequence-type": "addgene-full", "addgene_id": "180379", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "file": "data/addgene_plasmids/180379.addgene-full.gb" }, @@ -29200,7 +36723,10 @@ "plasmid_name": "pSCAR_Cas9-blast_GFP", "sequence-type": "addgene-full", "addgene_id": "162074", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.01.001", + "https://www.ncbi.nlm.nih.gov/pubmed/33497609" + ], "kit": null, "file": "data/addgene_plasmids/162074.addgene-full.gb" }, @@ -29209,7 +36735,10 @@ "plasmid_name": "TGFB1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98377", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98377.addgene-full.gb" }, @@ -29218,7 +36747,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM R394E", "sequence-type": "addgene-full", "addgene_id": "169987", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169987.addgene-full.gb" }, @@ -29227,7 +36759,10 @@ "plasmid_name": "pDONR223_IDH2_p.R172M", "sequence-type": "addgene-full", "addgene_id": "81618", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29239,7 +36774,10 @@ "plasmid_name": "pDONR223_TPK1_p.T213S", "sequence-type": "addgene-full", "addgene_id": "82805", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82805.addgene-full.gb" }, @@ -29248,7 +36786,9 @@ "plasmid_name": "pLV-EgI-HygroR", "sequence-type": "addgene-full", "addgene_id": "207177", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207177.addgene-full.gb" }, @@ -29257,7 +36797,10 @@ "plasmid_name": "TFORF3402", "sequence-type": "addgene-full", "addgene_id": "144878", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144878.addgene-full.gb" }, @@ -29266,7 +36809,10 @@ "plasmid_name": "pCMU-ACTLr", "sequence-type": "depositor-full", "addgene_id": "61193", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61193.depositor-full.gb" }, @@ -29275,7 +36821,6 @@ "plasmid_name": "pENTRY4_ ERF922", "sequence-type": "addgene-full", "addgene_id": "126893", - "references": [], "kit": null, "file": "data/addgene_plasmids/126893.addgene-full.gb" }, @@ -29284,7 +36829,10 @@ "plasmid_name": "pDONR221_SLC16A11", "sequence-type": "addgene-full", "addgene_id": "131939", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131939.addgene-full.gb" }, @@ -29293,7 +36841,10 @@ "plasmid_name": "R619-M89-303: CMV51p> HCoV-HKU1 S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166014", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/166014.addgene-full.gb" }, @@ -29302,7 +36853,10 @@ "plasmid_name": "p3E-rab1aa", "sequence-type": "addgene-full", "addgene_id": "109673", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109673.addgene-full.gb" }, @@ -29311,7 +36865,10 @@ "plasmid_name": "TFORF3281", "sequence-type": "addgene-full", "addgene_id": "144757", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144757.addgene-full.gb" }, @@ -29320,7 +36877,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_UBM-mut", "sequence-type": "addgene-full", "addgene_id": "187150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187150.addgene-full.gb" }, @@ -29329,7 +36889,10 @@ "plasmid_name": "pDONR223_GALNTL5_p.D221E", "sequence-type": "addgene-full", "addgene_id": "81563", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29341,7 +36904,9 @@ "plasmid_name": "pMpGWB112", "sequence-type": "depositor-full", "addgene_id": "68566", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68566.depositor-full.gb" }, @@ -29350,7 +36915,10 @@ "plasmid_name": "pDONR223_H2AFX_WT", "sequence-type": "addgene-full", "addgene_id": "81937", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29362,7 +36930,10 @@ "plasmid_name": "5'-3xFLAG Tcf12-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212076", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212076.addgene-full.gb" }, @@ -29371,7 +36942,10 @@ "plasmid_name": "pLIX403_UBAP2L_mCherry", "sequence-type": "addgene-full", "addgene_id": "105286", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.12.032", + "https://www.ncbi.nlm.nih.gov/pubmed/29373831" + ], "kit": null, "file": "data/addgene_plasmids/105286.addgene-full.gb" }, @@ -29380,7 +36954,10 @@ "plasmid_name": "pDONR223_PTEN_p.G127V", "sequence-type": "addgene-full", "addgene_id": "81683", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29392,7 +36969,10 @@ "plasmid_name": "actc1b-mKate2-rab10", "sequence-type": "addgene-full", "addgene_id": "109593", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109593.addgene-full.gb" }, @@ -29401,7 +36981,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp2", "sequence-type": "depositor-full", "addgene_id": "168908", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168908.depositor-full.gb" }, @@ -29410,7 +36993,10 @@ "plasmid_name": "pDONR223_MVP_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82977", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82977.addgene-full.gb" }, @@ -29419,7 +37005,9 @@ "plasmid_name": "pMpGWB303", "sequence-type": "depositor-full", "addgene_id": "68631", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68631.depositor-full.gb" }, @@ -29428,7 +37016,10 @@ "plasmid_name": "mKate2-P2A-APEX2-2xML1N(7Q)", "sequence-type": "depositor-full", "addgene_id": "67666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67666.depositor-full.gb" }, @@ -29437,7 +37028,10 @@ "plasmid_name": "KU701: pMVP (L5-L4) eGFP", "sequence-type": "addgene-full", "addgene_id": "121707", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121707.addgene-full.gb" }, @@ -29446,7 +37040,10 @@ "plasmid_name": "pAG304GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14256", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -29458,7 +37055,10 @@ "plasmid_name": "AAEL008566 GPCR", "sequence-type": "addgene-full", "addgene_id": "115397", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115397.addgene-full.gb" }, @@ -29467,7 +37067,9 @@ "plasmid_name": "pDONR221 msNLRP3(\u0394PYD, I125M-END)", "sequence-type": "addgene-full", "addgene_id": "218641", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218641.addgene-full.gb" }, @@ -29476,7 +37078,10 @@ "plasmid_name": "pMS050", "sequence-type": "addgene-full", "addgene_id": "91826", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "file": "data/addgene_plasmids/91826.addgene-full.gb" }, @@ -29485,7 +37090,10 @@ "plasmid_name": "pcDNA5FRT/TO-Strep/HA-UBE2QL1", "sequence-type": "addgene-full", "addgene_id": "124665", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "file": "data/addgene_plasmids/124665.addgene-full.gb" }, @@ -29494,7 +37102,10 @@ "plasmid_name": "pYPQ281 (MbCas12a)", "sequence-type": "addgene-full", "addgene_id": "138113", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138113.addgene-full.gb" }, @@ -29503,7 +37114,10 @@ "plasmid_name": "pDONR221-kcnk13a", "sequence-type": "addgene-full", "addgene_id": "208996", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208996.addgene-full.gb" }, @@ -29512,7 +37126,10 @@ "plasmid_name": "pCLX-M38s/TOP-dGFP", "sequence-type": "addgene-full", "addgene_id": "114295", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.01.061", + "https://www.ncbi.nlm.nih.gov/pubmed/25732825" + ], "kit": null, "file": "data/addgene_plasmids/114295.addgene-full.gb" }, @@ -29521,7 +37138,10 @@ "plasmid_name": "pDONR223_RGR_WT", "sequence-type": "addgene-full", "addgene_id": "81845", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29533,7 +37153,10 @@ "plasmid_name": "pENTR4 no ccDB (686-1)", "sequence-type": "addgene-full", "addgene_id": "17424", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17424.addgene-full.gb" }, @@ -29542,7 +37165,10 @@ "plasmid_name": "pHAGE-BRAF-G258V", "sequence-type": "addgene-full", "addgene_id": "116145", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116145.addgene-full.gb" }, @@ -29551,7 +37177,10 @@ "plasmid_name": "TFORF3149", "sequence-type": "addgene-full", "addgene_id": "144625", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144625.addgene-full.gb" }, @@ -29560,7 +37189,10 @@ "plasmid_name": "p3E-rab39ba", "sequence-type": "addgene-full", "addgene_id": "109701", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109701.addgene-full.gb" }, @@ -29569,7 +37201,10 @@ "plasmid_name": "pME phluorin2-gpi", "sequence-type": "depositor-full", "addgene_id": "73793", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.016576", + "https://www.ncbi.nlm.nih.gov/pubmed/24973752" + ], "kit": null, "file": "data/addgene_plasmids/73793.depositor-full.gb" }, @@ -29578,7 +37213,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-3", "sequence-type": "depositor-full", "addgene_id": "46706", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46706.depositor-full.gb" }, @@ -29587,7 +37225,9 @@ "plasmid_name": "pDONR221-DDX5(IDR)", "sequence-type": "addgene-full", "addgene_id": "166166", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166166.addgene-full.gb" }, @@ -29596,7 +37236,10 @@ "plasmid_name": "pCXLE-hGLIS1", "sequence-type": "depositor-full", "addgene_id": "37625", - "references": [], + "references": [ + "https://doi.org/10.1002/stem.1293", + "https://www.ncbi.nlm.nih.gov/pubmed/23193063" + ], "kit": null, "file": "data/addgene_plasmids/37625.depositor-full.gb" }, @@ -29605,7 +37248,10 @@ "plasmid_name": "KN701: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS", "sequence-type": "addgene-full", "addgene_id": "121828", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121828.addgene-full.gb" }, @@ -29614,7 +37260,10 @@ "plasmid_name": "pDONR221-CLN3_STOP", "sequence-type": "addgene-full", "addgene_id": "161034", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161034.addgene-full.gb" }, @@ -29623,7 +37272,10 @@ "plasmid_name": "pEGFP\u2010RNASEH2C", "sequence-type": "addgene-full", "addgene_id": "108698", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkq980", + "https://www.ncbi.nlm.nih.gov/pubmed/21245041" + ], "kit": null, "file": "data/addgene_plasmids/108698.addgene-full.gb" }, @@ -29632,7 +37284,10 @@ "plasmid_name": "pDONR223_FAM196A_p.R399Q", "sequence-type": "addgene-full", "addgene_id": "81411", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29644,7 +37299,6 @@ "plasmid_name": "p5E-2.3k-fabp2", "sequence-type": "addgene-full", "addgene_id": "84927", - "references": [], "kit": null, "file": "data/addgene_plasmids/84927.addgene-full.gb" }, @@ -29653,7 +37307,10 @@ "plasmid_name": "pEPYCeGM0009", "sequence-type": "addgene-full", "addgene_id": "196143", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196143.addgene-full.gb" }, @@ -29662,7 +37319,10 @@ "plasmid_name": "dg265_pENTR_CoChRCel", "sequence-type": "depositor-full", "addgene_id": "66103", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.177956", + "https://www.ncbi.nlm.nih.gov/pubmed/26022242" + ], "kit": null, "file": "data/addgene_plasmids/66103.depositor-full.gb" }, @@ -29671,7 +37331,6 @@ "plasmid_name": "35S:YFPc-RabG3b-CA", "sequence-type": "addgene-full", "addgene_id": "102372", - "references": [], "kit": null, "file": "data/addgene_plasmids/102372.addgene-full.gb" }, @@ -29680,7 +37339,10 @@ "plasmid_name": "TFORF2935", "sequence-type": "addgene-full", "addgene_id": "144411", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144411.addgene-full.gb" }, @@ -29689,7 +37351,10 @@ "plasmid_name": "actc1b-mKate2-ARF1", "sequence-type": "addgene-full", "addgene_id": "109535", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109535.addgene-full.gb" }, @@ -29698,7 +37363,10 @@ "plasmid_name": "pDONR223_HIST1H3B_p.L101W", "sequence-type": "addgene-full", "addgene_id": "81625", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29710,7 +37378,10 @@ "plasmid_name": "pRosa26-EF1a-hCas9IRESneo", "sequence-type": "addgene-full", "addgene_id": "67987", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2016.09.079", + "https://www.ncbi.nlm.nih.gov/pubmed/27760321" + ], "kit": null, "file": "data/addgene_plasmids/67987.addgene-full.gb" }, @@ -29719,7 +37390,10 @@ "plasmid_name": "pDONR221-SLC22A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161200", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161200.addgene-full.gb" }, @@ -29728,7 +37402,10 @@ "plasmid_name": "pAG415GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14218", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -29740,7 +37417,10 @@ "plasmid_name": "pDONR221-kcnj2b", "sequence-type": "addgene-full", "addgene_id": "173128", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173128.addgene-full.gb" }, @@ -29749,7 +37429,10 @@ "plasmid_name": "pDONR223_BRAF_p.G469S", "sequence-type": "addgene-full", "addgene_id": "82838", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82838.addgene-full.gb" }, @@ -29758,7 +37441,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Centrin3", "sequence-type": "addgene-full", "addgene_id": "136856", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136856.addgene-full.gb" }, @@ -29767,7 +37453,10 @@ "plasmid_name": "pT3-EF1aH Yap S127A", "sequence-type": "addgene-full", "addgene_id": "86497", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2013.02.009", + "https://www.ncbi.nlm.nih.gov/pubmed/23419361" + ], "kit": null, "file": "data/addgene_plasmids/86497.addgene-full.gb" }, @@ -29776,7 +37465,10 @@ "plasmid_name": "pDONR221_FLVCR2", "sequence-type": "addgene-full", "addgene_id": "131904", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131904.addgene-full.gb" }, @@ -29785,7 +37477,10 @@ "plasmid_name": "TFORF3369", "sequence-type": "addgene-full", "addgene_id": "144845", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144845.addgene-full.gb" }, @@ -29794,7 +37489,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-Erbb2 NLS", "sequence-type": "addgene-full", "addgene_id": "192317", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192317.addgene-full.gb" }, @@ -29803,7 +37501,10 @@ "plasmid_name": "pENTR-ZmIAA8", "sequence-type": "addgene-full", "addgene_id": "188431", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188431.addgene-full.gb" }, @@ -29812,7 +37513,10 @@ "plasmid_name": "pLenti CRISPR sgSHMT1_2", "sequence-type": "addgene-full", "addgene_id": "106312", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106312.addgene-full.gb" }, @@ -29821,7 +37525,10 @@ "plasmid_name": "pYPQ239-RVR", "sequence-type": "addgene-full", "addgene_id": "108863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "file": "data/addgene_plasmids/108863.addgene-full.gb" }, @@ -29830,7 +37537,10 @@ "plasmid_name": "pLX303-ZIM3-KRAB-dCas9", "sequence-type": "addgene-full", "addgene_id": "154472", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-020-0966-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33020655" + ], "kit": null, "file": "data/addgene_plasmids/154472.addgene-full.gb" }, @@ -29839,7 +37549,10 @@ "plasmid_name": "Fragment 1 Null", "sequence-type": "addgene-full", "addgene_id": "198729", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-022-01585-8", + "https://www.ncbi.nlm.nih.gov/pubmed/36593415" + ], "kit": null, "file": "data/addgene_plasmids/198729.addgene-full.gb" }, @@ -29848,7 +37561,6 @@ "plasmid_name": "HA-hDAGLb-V5", "sequence-type": "addgene-full", "addgene_id": "87675", - "references": [], "kit": null, "file": "data/addgene_plasmids/87675.addgene-full.gb" }, @@ -29857,7 +37569,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP16", "sequence-type": "addgene-full", "addgene_id": "158367", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158367.addgene-full.gb" }, @@ -29866,7 +37581,10 @@ "plasmid_name": "pcDNA pDEST40 Cas9 GW STOP", "sequence-type": "addgene-full", "addgene_id": "183196", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "file": "data/addgene_plasmids/183196.addgene-full.gb" }, @@ -29875,7 +37593,6 @@ "plasmid_name": "p42Hyg 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58559", - "references": [], "kit": null, "file": "data/addgene_plasmids/58559.depositor-full.gb" }, @@ -29884,7 +37601,10 @@ "plasmid_name": "pGWB452", "sequence-type": "depositor-full", "addgene_id": "74834", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74834.depositor-full.gb" }, @@ -29893,7 +37613,10 @@ "plasmid_name": "MSCV-N JCV-cy ER", "sequence-type": "addgene-full", "addgene_id": "37866", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "file": "data/addgene_plasmids/37866.addgene-full.gb" }, @@ -29902,7 +37625,10 @@ "plasmid_name": "pHAGE-PTEN-D331Tfs*13", "sequence-type": "addgene-full", "addgene_id": "116620", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116620.addgene-full.gb" }, @@ -29911,7 +37637,10 @@ "plasmid_name": "pENTR2-L3-SfoI-mCherry-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141022", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141022.addgene-full.gb" }, @@ -29920,7 +37649,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKVC", "sequence-type": "addgene-full", "addgene_id": "145339", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145339.addgene-full.gb" }, @@ -29929,7 +37661,10 @@ "plasmid_name": "pEnt L1L3 EF1a-tTA-2", "sequence-type": "depositor-full", "addgene_id": "26803", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "file": "data/addgene_plasmids/26803.depositor-full.gb" }, @@ -29938,7 +37673,10 @@ "plasmid_name": "2xmyc-JIP4", "sequence-type": "addgene-full", "addgene_id": "164633", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164633.addgene-full.gb" }, @@ -29947,7 +37685,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-GABARAPL2Y49A/L50A", "sequence-type": "addgene-full", "addgene_id": "175752", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175752.addgene-full.gb" }, @@ -29956,7 +37697,10 @@ "plasmid_name": "pEntry Tshld-GFP", "sequence-type": "depositor-full", "addgene_id": "53211", - "references": [], + "references": [ + "https://doi.org/10.1002/cbic.201400006", + "https://www.ncbi.nlm.nih.gov/pubmed/24615791" + ], "kit": null, "file": "data/addgene_plasmids/53211.depositor-full.gb" }, @@ -29965,7 +37709,6 @@ "plasmid_name": "R777-E021 Hs.CCND3", "sequence-type": "depositor-full", "addgene_id": "70305", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -29977,7 +37720,10 @@ "plasmid_name": "MAC_N_KLF5", "sequence-type": "addgene-full", "addgene_id": "187747", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187747.addgene-full.gb" }, @@ -29986,7 +37732,10 @@ "plasmid_name": "pDONR223_DNASE2_p.Y182H", "sequence-type": "addgene-full", "addgene_id": "81374", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -29998,7 +37747,10 @@ "plasmid_name": "pCFJ2214 - Intron GG1 - 900 bp", "sequence-type": "addgene-full", "addgene_id": "159880", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159880.addgene-full.gb" }, @@ -30007,7 +37759,10 @@ "plasmid_name": "pSLIKneo 3XFLAG-wtGATA6-3XAU1_RNAi resistant", "sequence-type": "depositor-full", "addgene_id": "72616", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "file": "data/addgene_plasmids/72616.depositor-full.gb" }, @@ -30016,7 +37771,10 @@ "plasmid_name": "TFORF3543", "sequence-type": "depositor-full", "addgene_id": "145019", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145019.depositor-full.gb" }, @@ -30025,7 +37783,10 @@ "plasmid_name": "pdestMB14_hsp-16.2p-grh-1-gfp", "sequence-type": "addgene-full", "addgene_id": "177762", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-27732-4", + "https://www.ncbi.nlm.nih.gov/pubmed/35013237" + ], "kit": null, "file": "data/addgene_plasmids/177762.addgene-full.gb" }, @@ -30034,7 +37795,10 @@ "plasmid_name": "pDONR221_SLCO4C1", "sequence-type": "addgene-full", "addgene_id": "132248", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132248.addgene-full.gb" }, @@ -30043,7 +37807,10 @@ "plasmid_name": "pDEST-FRT-TO-GFP-PALB2 KR", "sequence-type": "depositor-full", "addgene_id": "71107", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71107.depositor-full.gb" }, @@ -30052,7 +37819,10 @@ "plasmid_name": "pMH-Cas9-gate", "sequence-type": "addgene-full", "addgene_id": "113742", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -30064,7 +37834,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS-Ala148 hygro", "sequence-type": "addgene-full", "addgene_id": "158636", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158636.addgene-full.gb" }, @@ -30073,7 +37846,10 @@ "plasmid_name": "pDONR223-ZNF76", "sequence-type": "addgene-full", "addgene_id": "88678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88678.addgene-full.gb" }, @@ -30082,7 +37858,6 @@ "plasmid_name": "MECP2 - P376S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216601", - "references": [], "kit": null, "file": "data/addgene_plasmids/216601.addgene-full.gb" }, @@ -30091,7 +37866,10 @@ "plasmid_name": "E3_pENTR_L3-L2_NG_G1333-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171732", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171732.addgene-full.gb" }, @@ -30100,7 +37878,6 @@ "plasmid_name": "pAG416-GAL-FUS-P431L", "sequence-type": "addgene-full", "addgene_id": "181717", - "references": [], "kit": null, "file": "data/addgene_plasmids/181717.addgene-full.gb" }, @@ -30109,7 +37886,6 @@ "plasmid_name": "pcDNA3.1-ccdB-V5", "sequence-type": "addgene-full", "addgene_id": "214985", - "references": [], "kit": null, "file": "data/addgene_plasmids/214985.addgene-full.gb" }, @@ -30118,7 +37894,10 @@ "plasmid_name": "pENTR_L1-YFP-Turbo-NES-L2", "sequence-type": "addgene-full", "addgene_id": "127349", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127349.addgene-full.gb" }, @@ -30127,7 +37906,10 @@ "plasmid_name": "pDONR223_ATG5_WT", "sequence-type": "addgene-full", "addgene_id": "82246", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82246.addgene-full.gb" }, @@ -30136,7 +37918,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0404-luc2", "sequence-type": "addgene-full", "addgene_id": "214631", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214631.addgene-full.gb" }, @@ -30145,7 +37930,10 @@ "plasmid_name": "pWS926", "sequence-type": "addgene-full", "addgene_id": "123052", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123052.addgene-full.gb" }, @@ -30154,7 +37942,10 @@ "plasmid_name": "pDONR221-RHAG_STOP", "sequence-type": "depositor-full", "addgene_id": "161037", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161037.depositor-full.gb" }, @@ -30163,7 +37954,10 @@ "plasmid_name": "pDONR221_SLC35F1", "sequence-type": "addgene-full", "addgene_id": "132133", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132133.addgene-full.gb" }, @@ -30172,7 +37966,10 @@ "plasmid_name": "pDEST40-2XHA-Src-K298M", "sequence-type": "addgene-full", "addgene_id": "140314", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140314.addgene-full.gb" }, @@ -30181,7 +37978,10 @@ "plasmid_name": "pMuLE ENTR CMV Renilla Luciferase L5-L2", "sequence-type": "depositor-full", "addgene_id": "62186", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62186.depositor-full.gb" }, @@ -30190,7 +37990,6 @@ "plasmid_name": "p667-UBC-AAK1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135255", - "references": [], "kit": null, "file": "data/addgene_plasmids/135255.addgene-full.gb" }, @@ -30199,7 +37998,10 @@ "plasmid_name": "pAG415GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14362", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -30211,7 +38013,10 @@ "plasmid_name": "pDONR221_SPNS2", "sequence-type": "addgene-full", "addgene_id": "132307", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132307.addgene-full.gb" }, @@ -30220,7 +38025,10 @@ "plasmid_name": "pGGEV_7_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49302", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -30232,7 +38040,10 @@ "plasmid_name": "pMYH9-D1424H-FLAG", "sequence-type": "addgene-full", "addgene_id": "183513", - "references": [], + "references": [ + "https://doi.org/10.1186/1755-8417-1-5", + "https://www.ncbi.nlm.nih.gov/pubmed/19046415" + ], "kit": null, "file": "data/addgene_plasmids/183513.addgene-full.gb" }, @@ -30241,7 +38052,10 @@ "plasmid_name": "pSC39", "sequence-type": "addgene-full", "addgene_id": "104813", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104813.addgene-full.gb" }, @@ -30250,7 +38064,10 @@ "plasmid_name": "pENTR-LUC (w158-1)", "sequence-type": "depositor-full", "addgene_id": "17473", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17473.depositor-full.gb" }, @@ -30259,7 +38076,10 @@ "plasmid_name": "pDONR221-Cka1", "sequence-type": "addgene-full", "addgene_id": "99979", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99979.addgene-full.gb" }, @@ -30268,7 +38088,10 @@ "plasmid_name": "pYPQ144-ZmUbi-tRNA", "sequence-type": "addgene-full", "addgene_id": "158402", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00953-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34168320" + ], "kit": null, "file": "data/addgene_plasmids/158402.addgene-full.gb" }, @@ -30277,7 +38100,9 @@ "plasmid_name": "pDestTol2-QUAS:NLS-GFP-he1.1:CFP", "sequence-type": "addgene-full", "addgene_id": "184815", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "file": "data/addgene_plasmids/184815.addgene-full.gb" }, @@ -30286,7 +38111,10 @@ "plasmid_name": "pAF020 p3E-2A-mCerulean", "sequence-type": "addgene-full", "addgene_id": "195974", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195974.addgene-full.gb" }, @@ -30295,7 +38123,10 @@ "plasmid_name": "pDL191", "sequence-type": "addgene-full", "addgene_id": "175932", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175932.addgene-full.gb" }, @@ -30304,7 +38135,10 @@ "plasmid_name": "pLenti X2 Hygro DEST (w17-1)", "sequence-type": "addgene-full", "addgene_id": "17295", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17295.addgene-full.gb" }, @@ -30313,7 +38147,10 @@ "plasmid_name": "pINDUCER20-Flag-hSPDEF WT", "sequence-type": "addgene-full", "addgene_id": "100873", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2017.03.048", + "https://www.ncbi.nlm.nih.gov/pubmed/28390865" + ], "kit": null, "file": "data/addgene_plasmids/100873.addgene-full.gb" }, @@ -30322,7 +38159,10 @@ "plasmid_name": "pDONR223_PDPK1_WT", "sequence-type": "addgene-full", "addgene_id": "82309", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82309.addgene-full.gb" }, @@ -30331,7 +38171,10 @@ "plasmid_name": "C122-E53: mClover3", "sequence-type": "addgene-full", "addgene_id": "162898", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -30343,7 +38186,10 @@ "plasmid_name": "pDEST-3xFLAG-Ubc7", "sequence-type": "addgene-full", "addgene_id": "212801", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.11.016", + "https://www.ncbi.nlm.nih.gov/pubmed/38103558" + ], "kit": null, "file": "data/addgene_plasmids/212801.addgene-full.gb" }, @@ -30352,7 +38198,10 @@ "plasmid_name": "PB-Pitx2", "sequence-type": "depositor-full", "addgene_id": "60668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "file": "data/addgene_plasmids/60668.depositor-full.gb" }, @@ -30361,7 +38210,10 @@ "plasmid_name": "MSCV-neo C-HAonly ZER1", "sequence-type": "addgene-full", "addgene_id": "191540", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "file": "data/addgene_plasmids/191540.addgene-full.gb" }, @@ -30370,7 +38222,10 @@ "plasmid_name": "mTALEAD nad7-1", "sequence-type": "addgene-full", "addgene_id": "210831", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "file": "data/addgene_plasmids/210831.addgene-full.gb" }, @@ -30379,7 +38234,6 @@ "plasmid_name": "pREP42xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79024", - "references": [], "kit": null, "file": "data/addgene_plasmids/79024.depositor-full.gb" }, @@ -30388,7 +38242,10 @@ "plasmid_name": "pHAGE-IGF1R-F1057L", "sequence-type": "addgene-full", "addgene_id": "116414", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116414.addgene-full.gb" }, @@ -30397,7 +38254,10 @@ "plasmid_name": "PE_27: Plas_lac_tet_eG::sfYFP", "sequence-type": "addgene-full", "addgene_id": "104888", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104888.addgene-full.gb" }, @@ -30406,7 +38266,10 @@ "plasmid_name": "pLenti-Zyxin-A (aa139-564)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187693", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187693.addgene-full.gb" }, @@ -30415,7 +38278,6 @@ "plasmid_name": "IDG_CACNB3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161685", - "references": [], "kit": null, "file": "data/addgene_plasmids/161685.addgene-full.gb" }, @@ -30424,7 +38286,10 @@ "plasmid_name": "LIIbeta R 5-6", "sequence-type": "depositor-full", "addgene_id": "54365", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54365.depositor-full.gb" }, @@ -30433,7 +38298,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-STK4", "sequence-type": "addgene-full", "addgene_id": "172989", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172989.addgene-full.gb" }, @@ -30442,7 +38310,10 @@ "plasmid_name": "pDONR221_SLC6A16", "sequence-type": "addgene-full", "addgene_id": "132195", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132195.addgene-full.gb" }, @@ -30451,7 +38322,10 @@ "plasmid_name": "C413-E19: attB4-mPol2p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162971", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -30463,7 +38337,10 @@ "plasmid_name": "pENTR223-BTRF1", "sequence-type": "addgene-full", "addgene_id": "195806", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195806.addgene-full.gb" }, @@ -30472,7 +38349,10 @@ "plasmid_name": "Flag-HA-USP16", "sequence-type": "addgene-full", "addgene_id": "22595", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22595.addgene-full.gb" }, @@ -30481,7 +38361,10 @@ "plasmid_name": "LRRC3_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176972", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176972.addgene-full.gb" }, @@ -30490,7 +38373,6 @@ "plasmid_name": "g15s pD47", "sequence-type": "addgene-full", "addgene_id": "117464", - "references": [], "kit": null, "file": "data/addgene_plasmids/117464.addgene-full.gb" }, @@ -30499,7 +38381,10 @@ "plasmid_name": "pCR8/GW/TOPO-ERF", "sequence-type": "addgene-full", "addgene_id": "98626", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98626.addgene-full.gb" }, @@ -30508,7 +38393,10 @@ "plasmid_name": "pDONR223_GPS2_p.R102Q", "sequence-type": "addgene-full", "addgene_id": "81349", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -30520,7 +38408,10 @@ "plasmid_name": "pDONR223_BECN1_WT", "sequence-type": "addgene-full", "addgene_id": "82100", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82100.addgene-full.gb" }, @@ -30529,7 +38420,10 @@ "plasmid_name": "1455_pDEST_miniTol2_R4-R2_MCS", "sequence-type": "addgene-full", "addgene_id": "171794", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "file": "data/addgene_plasmids/171794.addgene-full.gb" }, @@ -30538,7 +38432,10 @@ "plasmid_name": "pDONR221_SLC39A10", "sequence-type": "addgene-full", "addgene_id": "132275", - "references": [], + "references": [ + "https://doi.org/10.1007/s10534-022-00474-6", + "https://www.ncbi.nlm.nih.gov/pubmed/36454509" + ], "kit": null, "file": "data/addgene_plasmids/132275.addgene-full.gb" }, @@ -30547,7 +38444,10 @@ "plasmid_name": "pHAGE-PIK3CD-E1021K", "sequence-type": "addgene-full", "addgene_id": "116566", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116566.addgene-full.gb" }, @@ -30556,7 +38456,10 @@ "plasmid_name": "pDONR223_SERPINB5_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83002", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83002.addgene-full.gb" }, @@ -30565,7 +38468,10 @@ "plasmid_name": "pLenti-PGK-Hygro-amp-sgRNA-resistant PBRM1", "sequence-type": "addgene-full", "addgene_id": "107407", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1619726114", + "https://www.ncbi.nlm.nih.gov/pubmed/28082722" + ], "kit": null, "file": "data/addgene_plasmids/107407.addgene-full.gb" }, @@ -30574,7 +38480,10 @@ "plasmid_name": "tetO-MYOCD", "sequence-type": "addgene-full", "addgene_id": "170696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170696.addgene-full.gb" }, @@ -30583,7 +38492,10 @@ "plasmid_name": "pAG414GPD-GmCYP722C(pYL887)", "sequence-type": "addgene-full", "addgene_id": "178298", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178298.addgene-full.gb" }, @@ -30592,7 +38504,9 @@ "plasmid_name": "pLe6\u0394 -hLP-mcs/(EGFP-IresPuro-hInt)", "sequence-type": "depositor-full", "addgene_id": "64314", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24146984" + ], "kit": null, "file": "data/addgene_plasmids/64314.depositor-full.gb" }, @@ -30601,7 +38515,10 @@ "plasmid_name": "pDONR-IAA28_no stop", "sequence-type": "depositor-full", "addgene_id": "83861", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83861.depositor-full.gb" }, @@ -30610,7 +38527,9 @@ "plasmid_name": "p5E-dusp6", "sequence-type": "depositor-full", "addgene_id": "82584", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24643048" + ], "kit": null, "file": "data/addgene_plasmids/82584.depositor-full.gb" }, @@ -30619,7 +38538,10 @@ "plasmid_name": "pT2-cryR;lmo2CE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90153", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90153.addgene-full.gb" }, @@ -30628,7 +38550,10 @@ "plasmid_name": "pDONR221-SLC35B2_STOP", "sequence-type": "addgene-full", "addgene_id": "161417", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161417.addgene-full.gb" }, @@ -30637,7 +38562,6 @@ "plasmid_name": "pHAGE-CMV-Flag-RIOK3-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170576", - "references": [], "kit": null, "file": "data/addgene_plasmids/170576.addgene-full.gb" }, @@ -30646,7 +38570,10 @@ "plasmid_name": "pHAGE-SRSF2-P95R", "sequence-type": "addgene-full", "addgene_id": "116686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116686.addgene-full.gb" }, @@ -30655,7 +38582,9 @@ "plasmid_name": "piggyBac-rtTA (4th_Gen)-SNCA(3K)-sfGFP-IRES-NGN2-puro (VK_1120)", "sequence-type": "addgene-full", "addgene_id": "209078", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.11.08.515615" + ], "kit": null, "file": "data/addgene_plasmids/209078.addgene-full.gb" }, @@ -30664,7 +38593,10 @@ "plasmid_name": "p35S::Cf-4-YFPc", "sequence-type": "addgene-full", "addgene_id": "86160", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "file": "data/addgene_plasmids/86160.addgene-full.gb" }, @@ -30673,7 +38605,6 @@ "plasmid_name": "p663-UBC-V5-CDK13_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135268", - "references": [], "kit": null, "file": "data/addgene_plasmids/135268.addgene-full.gb" }, @@ -30682,7 +38613,6 @@ "plasmid_name": "IDG_PKD2L2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161623", - "references": [], "kit": null, "file": "data/addgene_plasmids/161623.addgene-full.gb" }, @@ -30691,7 +38621,10 @@ "plasmid_name": "pYPQ151D10A-x3.7", "sequence-type": "addgene-full", "addgene_id": "124309", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "file": "data/addgene_plasmids/124309.addgene-full.gb" }, @@ -30700,7 +38633,6 @@ "plasmid_name": "R777-E251 Hs.RASSF1", "sequence-type": "depositor-full", "addgene_id": "70535", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -30712,7 +38644,10 @@ "plasmid_name": "pDONR223-ALK", "sequence-type": "addgene-full", "addgene_id": "23917", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -30724,7 +38659,10 @@ "plasmid_name": "pAG413GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14286", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -30736,7 +38674,10 @@ "plasmid_name": "pHAGE-IGF1R", "sequence-type": "addgene-full", "addgene_id": "116752", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116752.addgene-full.gb" }, @@ -30745,7 +38686,10 @@ "plasmid_name": "pCK011 p5E exorh", "sequence-type": "addgene-full", "addgene_id": "195949", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195949.addgene-full.gb" }, @@ -30754,7 +38698,10 @@ "plasmid_name": "pET-DEST42 -SSRP1", "sequence-type": "addgene-full", "addgene_id": "170439", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.05.099", + "https://www.ncbi.nlm.nih.gov/pubmed/31242411" + ], "kit": null, "file": "data/addgene_plasmids/170439.addgene-full.gb" }, @@ -30763,7 +38710,6 @@ "plasmid_name": "pLenti6.3_HES4", "sequence-type": "addgene-full", "addgene_id": "124072", - "references": [], "kit": null, "file": "data/addgene_plasmids/124072.addgene-full.gb" }, @@ -30772,7 +38718,10 @@ "plasmid_name": "pDONR221_SLC25A37", "sequence-type": "addgene-full", "addgene_id": "132041", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132041.addgene-full.gb" }, @@ -30781,7 +38730,10 @@ "plasmid_name": "pAC147-pCR8-dCas9VP64", "sequence-type": "depositor-full", "addgene_id": "48219", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/48219.depositor-full.gb" }, @@ -30790,7 +38742,6 @@ "plasmid_name": "pDONR221-cxadr", "sequence-type": "addgene-full", "addgene_id": "192734", - "references": [], "kit": null, "file": "data/addgene_plasmids/192734.addgene-full.gb" }, @@ -30799,7 +38750,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp9", "sequence-type": "depositor-full", "addgene_id": "168872", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168872.depositor-full.gb" }, @@ -30808,7 +38762,10 @@ "plasmid_name": "pHAGE-MAP2K1-S222A", "sequence-type": "addgene-full", "addgene_id": "116429", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116429.addgene-full.gb" }, @@ -30817,7 +38774,10 @@ "plasmid_name": "pDONR223-MCU-E264A", "sequence-type": "depositor-full", "addgene_id": "31730", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "file": "data/addgene_plasmids/31730.depositor-full.gb" }, @@ -30826,7 +38786,6 @@ "plasmid_name": "pAG426GAL-SARS-CoV-2_PLP", "sequence-type": "addgene-full", "addgene_id": "203509", - "references": [], "kit": null, "file": "data/addgene_plasmids/203509.addgene-full.gb" }, @@ -30835,7 +38794,9 @@ "plasmid_name": "p5E-mfap4", "sequence-type": "depositor-full", "addgene_id": "70052", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "file": "data/addgene_plasmids/70052.depositor-full.gb" }, @@ -30844,7 +38805,10 @@ "plasmid_name": "pSF278", "sequence-type": "addgene-full", "addgene_id": "167673", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167673.addgene-full.gb" }, @@ -30853,7 +38817,10 @@ "plasmid_name": "pDONR221-SLC16A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161101", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161101.addgene-full.gb" }, @@ -30862,7 +38829,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_R38Q", "sequence-type": "depositor-full", "addgene_id": "65094", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65094.depositor-full.gb" }, @@ -30871,7 +38841,10 @@ "plasmid_name": "pDONR223_NFE2L2_p.G31A", "sequence-type": "addgene-full", "addgene_id": "81524", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -30883,7 +38856,10 @@ "plasmid_name": "TFORF3234", "sequence-type": "addgene-full", "addgene_id": "144710", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144710.addgene-full.gb" }, @@ -30892,7 +38868,6 @@ "plasmid_name": "R777-E320 Hs.SOS2-nostop", "sequence-type": "depositor-full", "addgene_id": "70604", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -30904,7 +38879,10 @@ "plasmid_name": "actc1b-mKate2-rab39bb", "sequence-type": "addgene-full", "addgene_id": "109634", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109634.addgene-full.gb" }, @@ -30913,7 +38891,10 @@ "plasmid_name": "pLX304_zeo_mmIrf1", "sequence-type": "addgene-full", "addgene_id": "160098", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160098.addgene-full.gb" }, @@ -30922,7 +38903,10 @@ "plasmid_name": "pHAGE-FGFR3-V788M", "sequence-type": "addgene-full", "addgene_id": "116390", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116390.addgene-full.gb" }, @@ -30931,7 +38915,10 @@ "plasmid_name": "pGWT35S-AtOEP7(1-50aa)-VC155", "sequence-type": "addgene-full", "addgene_id": "194046", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "file": "data/addgene_plasmids/194046.addgene-full.gb" }, @@ -30940,7 +38927,9 @@ "plasmid_name": "pME-FlEx switch", "sequence-type": "depositor-full", "addgene_id": "82406", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82406.depositor-full.gb" }, @@ -30949,7 +38938,6 @@ "plasmid_name": "pAM-35s-CBL1-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102393", - "references": [], "kit": null, "file": "data/addgene_plasmids/102393.addgene-full.gb" }, @@ -30958,7 +38946,9 @@ "plasmid_name": "pME_Golgi-BFP_P2A_H2A_tdiRFP (JDW 1079)", "sequence-type": "addgene-full", "addgene_id": "224491", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224491.addgene-full.gb" }, @@ -30967,7 +38957,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP9", "sequence-type": "addgene-full", "addgene_id": "154408", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154408.addgene-full.gb" }, @@ -30976,7 +38969,10 @@ "plasmid_name": "pDR3.01", "sequence-type": "depositor-full", "addgene_id": "19369", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19369.depositor-full.gb" }, @@ -30985,7 +38981,10 @@ "plasmid_name": "plenti-CAG-IKZF1-V1-Q146H-FLAG-IRES-GFP", "sequence-type": "depositor-full", "addgene_id": "69048", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/69048.depositor-full.gb" }, @@ -30994,7 +38993,10 @@ "plasmid_name": "DIMT1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98330", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98330.addgene-full.gb" }, @@ -31003,7 +39005,10 @@ "plasmid_name": "pGWB510", "sequence-type": "depositor-full", "addgene_id": "74852", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74852.depositor-full.gb" }, @@ -31012,7 +39017,10 @@ "plasmid_name": "pYPQ265L2", "sequence-type": "addgene-full", "addgene_id": "174000", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "file": "data/addgene_plasmids/174000.addgene-full.gb" }, @@ -31021,7 +39029,10 @@ "plasmid_name": "MAC-FURIN", "sequence-type": "addgene-full", "addgene_id": "158386", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158386.addgene-full.gb" }, @@ -31030,7 +39041,10 @@ "plasmid_name": "VRK1-dTag-puro", "sequence-type": "addgene-full", "addgene_id": "199651", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "file": "data/addgene_plasmids/199651.addgene-full.gb" }, @@ -31039,7 +39053,10 @@ "plasmid_name": "pSGE_652_S2-1-ap_dCP", "sequence-type": "depositor-full", "addgene_id": "71161", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71161.depositor-full.gb" }, @@ -31048,7 +39065,10 @@ "plasmid_name": "pENTR R4-QF-R3", "sequence-type": "depositor-full", "addgene_id": "32310", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32310.depositor-full.gb" }, @@ -31057,7 +39077,10 @@ "plasmid_name": "pEBTet-SNAP-CCCAP", "sequence-type": "addgene-full", "addgene_id": "136798", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136798.addgene-full.gb" }, @@ -31066,7 +39089,6 @@ "plasmid_name": "R777-E079 Hs.EXOC7", "sequence-type": "depositor-full", "addgene_id": "70363", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -31078,7 +39100,10 @@ "plasmid_name": "pSlick-Neo-RECK", "sequence-type": "addgene-full", "addgene_id": "121986", - "references": [], + "references": [ + "https://doi.org/10.18632/oncotarget.25236", + "https://www.ncbi.nlm.nih.gov/pubmed/29805750" + ], "kit": null, "file": "data/addgene_plasmids/121986.addgene-full.gb" }, @@ -31087,7 +39112,10 @@ "plasmid_name": "pDONR223_KEAP1_p.D389Y", "sequence-type": "addgene-full", "addgene_id": "82842", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82842.addgene-full.gb" }, @@ -31096,7 +39124,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hSFRP1(aa181-314)-his", "sequence-type": "addgene-full", "addgene_id": "189549", - "references": [], "kit": null, "file": "data/addgene_plasmids/189549.addgene-full.gb" }, @@ -31105,7 +39132,10 @@ "plasmid_name": "pME-nls", "sequence-type": "addgene-full", "addgene_id": "108882", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "file": "data/addgene_plasmids/108882.addgene-full.gb" }, @@ -31114,7 +39144,10 @@ "plasmid_name": "LOC110681163 Neuropeptide FF receptor", "sequence-type": "addgene-full", "addgene_id": "115376", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115376.addgene-full.gb" }, @@ -31123,7 +39156,10 @@ "plasmid_name": "pUBQ10:AtFLS2", "sequence-type": "addgene-full", "addgene_id": "202186", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "file": "data/addgene_plasmids/202186.addgene-full.gb" }, @@ -31132,7 +39168,10 @@ "plasmid_name": "907L", "sequence-type": "addgene-full", "addgene_id": "160237", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160237.addgene-full.gb" }, @@ -31141,7 +39180,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a P", "sequence-type": "addgene-full", "addgene_id": "89385", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89385.addgene-full.gb" }, @@ -31150,7 +39192,10 @@ "plasmid_name": "pDONR223_ACAT2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82996", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82996.addgene-full.gb" }, @@ -31159,7 +39204,10 @@ "plasmid_name": "JL002: pMVP/eGFP-DEST", "sequence-type": "addgene-full", "addgene_id": "121852", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121852.addgene-full.gb" }, @@ -31168,7 +39216,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-43-44 context", "sequence-type": "depositor-full", "addgene_id": "46654", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46654.depositor-full.gb" }, @@ -31177,7 +39228,10 @@ "plasmid_name": "dpYPQ230-D156R-ABE4", "sequence-type": "addgene-full", "addgene_id": "195370", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "file": "data/addgene_plasmids/195370.addgene-full.gb" }, @@ -31186,7 +39240,6 @@ "plasmid_name": "pENTRY4_ WRKY28_2", "sequence-type": "addgene-full", "addgene_id": "126900", - "references": [], "kit": null, "file": "data/addgene_plasmids/126900.addgene-full.gb" }, @@ -31195,7 +39248,10 @@ "plasmid_name": "pDONR 221-FG1 (NON-STOP)", "sequence-type": "addgene-full", "addgene_id": "118681", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118681.addgene-full.gb" }, @@ -31204,7 +39260,10 @@ "plasmid_name": "p8126 MSCV-P C-FlagHA 16E7 R77S", "sequence-type": "addgene-full", "addgene_id": "163305", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "file": "data/addgene_plasmids/163305.addgene-full.gb" }, @@ -31213,7 +39272,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 N_nostop", "sequence-type": "addgene-full", "addgene_id": "168542", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168542.addgene-full.gb" }, @@ -31222,7 +39284,9 @@ "plasmid_name": "pDONR221-MARK4(v3)", "sequence-type": "addgene-full", "addgene_id": "166187", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166187.addgene-full.gb" }, @@ -31231,7 +39295,10 @@ "plasmid_name": "TFORF3494", "sequence-type": "addgene-full", "addgene_id": "144970", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144970.addgene-full.gb" }, @@ -31240,7 +39307,10 @@ "plasmid_name": "pENTR4-FKBP12DD N-term B (w385-4)", "sequence-type": "depositor-full", "addgene_id": "17415", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17415.depositor-full.gb" }, @@ -31249,7 +39319,10 @@ "plasmid_name": "pCM5.49", "sequence-type": "depositor-full", "addgene_id": "21391", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21391.depositor-full.gb" }, @@ -31258,7 +39331,10 @@ "plasmid_name": "pENTR-CASK", "sequence-type": "addgene-full", "addgene_id": "221427", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221427.addgene-full.gb" }, @@ -31267,7 +39343,10 @@ "plasmid_name": "pAG304GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14304", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -31279,7 +39358,10 @@ "plasmid_name": "pDONR223_BRAF_p.G466V", "sequence-type": "addgene-full", "addgene_id": "81710", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -31291,7 +39373,9 @@ "plasmid_name": "p3E-WPRE-SV40-pA (JDW 922)", "sequence-type": "addgene-full", "addgene_id": "224545", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224545.addgene-full.gb" }, @@ -31300,7 +39384,10 @@ "plasmid_name": "pSLIK_hygro_BirA", "sequence-type": "addgene-full", "addgene_id": "136537", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136537.addgene-full.gb" }, @@ -31309,7 +39396,10 @@ "plasmid_name": "pDONR221-SLC52A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161335", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161335.addgene-full.gb" }, @@ -31318,7 +39408,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp7", "sequence-type": "addgene-full", "addgene_id": "168916", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168916.addgene-full.gb" }, @@ -31327,7 +39420,10 @@ "plasmid_name": "TFORF3048", "sequence-type": "addgene-full", "addgene_id": "144524", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144524.addgene-full.gb" }, @@ -31336,7 +39432,10 @@ "plasmid_name": "pDONR223_DARC_p.T211S", "sequence-type": "addgene-full", "addgene_id": "82750", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82750.addgene-full.gb" }, @@ -31345,7 +39444,10 @@ "plasmid_name": "IG401: pMVP (L1-R5) RIP", "sequence-type": "addgene-full", "addgene_id": "121694", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121694.addgene-full.gb" }, @@ -31354,7 +39456,10 @@ "plasmid_name": "pDONR223_KEAP1_p.E611D", "sequence-type": "addgene-full", "addgene_id": "81519", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -31366,7 +39471,10 @@ "plasmid_name": "MLKP1delTM", "sequence-type": "addgene-full", "addgene_id": "130841", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130841.addgene-full.gb" }, @@ -31375,7 +39483,10 @@ "plasmid_name": "TFORF3423", "sequence-type": "addgene-full", "addgene_id": "144899", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144899.addgene-full.gb" }, @@ -31384,7 +39495,10 @@ "plasmid_name": "JDW 822 (pDONR221-V5-mScarlet-I-KRAS4A-WT)", "sequence-type": "addgene-full", "addgene_id": "156405", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156405.addgene-full.gb" }, @@ -31393,7 +39507,10 @@ "plasmid_name": "actc1b-mKate2-rab20", "sequence-type": "addgene-full", "addgene_id": "109609", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109609.addgene-full.gb" }, @@ -31402,7 +39519,6 @@ "plasmid_name": "pDESTP10aw", "sequence-type": "depositor-full", "addgene_id": "41439", - "references": [], "kit": null, "file": "data/addgene_plasmids/41439.depositor-full.gb" }, @@ -31411,7 +39527,6 @@ "plasmid_name": "pENT L1-Kozak-ERK-KTR-L2", "sequence-type": "addgene-full", "addgene_id": "186353", - "references": [], "kit": null, "file": "data/addgene_plasmids/186353.addgene-full.gb" }, @@ -31420,7 +39535,10 @@ "plasmid_name": "pLX307/PTPN11 E76G", "sequence-type": "addgene-full", "addgene_id": "140862", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0209", + "https://www.ncbi.nlm.nih.gov/pubmed/31771968" + ], "kit": null, "file": "data/addgene_plasmids/140862.addgene-full.gb" }, @@ -31429,7 +39547,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND S297A", "sequence-type": "addgene-full", "addgene_id": "169966", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169966.addgene-full.gb" }, @@ -31438,7 +39559,10 @@ "plasmid_name": "pDONR221-SLC39A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161247", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161247.addgene-full.gb" }, @@ -31447,7 +39571,10 @@ "plasmid_name": "pLXI_TRC403 LacZ", "sequence-type": "addgene-full", "addgene_id": "111184", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.44161", + "https://www.ncbi.nlm.nih.gov/pubmed/30860482" + ], "kit": null, "file": "data/addgene_plasmids/111184.addgene-full.gb" }, @@ -31456,7 +39583,6 @@ "plasmid_name": "pDEST26-PPP2CB-C-HA", "sequence-type": "addgene-full", "addgene_id": "195179", - "references": [], "kit": null, "file": "data/addgene_plasmids/195179.addgene-full.gb" }, @@ -31465,7 +39591,10 @@ "plasmid_name": "pDONR223_KRAS_p.A59G", "sequence-type": "addgene-full", "addgene_id": "81662", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -31477,7 +39606,10 @@ "plasmid_name": "pTC-CMV-Tet-YAP", "sequence-type": "addgene-full", "addgene_id": "85579", - "references": [], + "references": [ + "https://doi.org/10.1002/jgm.2940", + "https://www.ncbi.nlm.nih.gov/pubmed/28009940" + ], "kit": null, "file": "data/addgene_plasmids/85579.addgene-full.gb" }, @@ -31486,7 +39618,10 @@ "plasmid_name": "p3E-Dnm2a-DN", "sequence-type": "addgene-full", "addgene_id": "109572", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109572.addgene-full.gb" }, @@ -31495,7 +39630,10 @@ "plasmid_name": "TFORF2980", "sequence-type": "addgene-full", "addgene_id": "144456", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144456.addgene-full.gb" }, @@ -31504,7 +39642,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-Spike", "sequence-type": "addgene-full", "addgene_id": "168864", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168864.addgene-full.gb" }, @@ -31513,7 +39654,10 @@ "plasmid_name": "pHAGE-ERBB2-K716E", "sequence-type": "addgene-full", "addgene_id": "116336", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116336.addgene-full.gb" }, @@ -31522,7 +39666,10 @@ "plasmid_name": "MiniCoopR mitfa:NRAS", "sequence-type": "addgene-full", "addgene_id": "118847", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118847.addgene-full.gb" }, @@ -31531,7 +39678,10 @@ "plasmid_name": "TFORF3326", "sequence-type": "addgene-full", "addgene_id": "144802", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144802.addgene-full.gb" }, @@ -31540,7 +39690,6 @@ "plasmid_name": "R777-E003 Hs.AKT2", "sequence-type": "depositor-full", "addgene_id": "70287", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -31552,7 +39701,10 @@ "plasmid_name": "p3E-rab33ba", "sequence-type": "addgene-full", "addgene_id": "109692", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109692.addgene-full.gb" }, @@ -31561,7 +39713,10 @@ "plasmid_name": "pcDNA3.2/NS3", "sequence-type": "addgene-full", "addgene_id": "120822", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120822.addgene-full.gb" }, @@ -31570,7 +39725,10 @@ "plasmid_name": "pDONR221_SLC10A4", "sequence-type": "addgene-full", "addgene_id": "131943", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131943.addgene-full.gb" }, @@ -31579,7 +39737,10 @@ "plasmid_name": "pDONR223_EYS_p.F336L", "sequence-type": "addgene-full", "addgene_id": "81582", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -31591,7 +39752,10 @@ "plasmid_name": "pEBTet-SNAP-Cep63", "sequence-type": "addgene-full", "addgene_id": "136811", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136811.addgene-full.gb" }, @@ -31600,7 +39764,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 N_stop", "sequence-type": "addgene-full", "addgene_id": "168604", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168604.addgene-full.gb" }, @@ -31609,7 +39776,10 @@ "plasmid_name": "pDONR-IAA12_no stop", "sequence-type": "depositor-full", "addgene_id": "83849", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83849.depositor-full.gb" }, @@ -31618,7 +39788,10 @@ "plasmid_name": "pME-GcAMP5", "sequence-type": "addgene-full", "addgene_id": "126569", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201905065", + "https://www.ncbi.nlm.nih.gov/pubmed/34633413" + ], "kit": null, "file": "data/addgene_plasmids/126569.addgene-full.gb" }, @@ -31627,7 +39800,10 @@ "plasmid_name": "pMOS009: QuasAr2-mOrange2 voltage sensor (plasma membrane)", "sequence-type": "addgene-full", "addgene_id": "163043", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163043.addgene-full.gb" }, @@ -31636,7 +39812,10 @@ "plasmid_name": "TFORF3106", "sequence-type": "addgene-full", "addgene_id": "144582", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144582.addgene-full.gb" }, @@ -31645,7 +39824,10 @@ "plasmid_name": "AAV-short_BrokenHeart (no BC)", "sequence-type": "addgene-full", "addgene_id": "86950", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1918241117", + "https://www.ncbi.nlm.nih.gov/pubmed/32300008" + ], "kit": null, "file": "data/addgene_plasmids/86950.addgene-full.gb" }, @@ -31654,7 +39836,6 @@ "plasmid_name": "pHAGE pGK MitoFlux (pSu9-HaloTag7-mGFP-STOP)", "sequence-type": "addgene-full", "addgene_id": "215011", - "references": [], "kit": null, "file": "data/addgene_plasmids/215011.addgene-full.gb" }, @@ -31663,7 +39844,10 @@ "plasmid_name": "pDEST17-UbE2S", "sequence-type": "addgene-full", "addgene_id": "15807", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "file": "data/addgene_plasmids/15807.addgene-full.gb" }, @@ -31672,7 +39856,10 @@ "plasmid_name": "pDONR223_HIST1H3B_WT", "sequence-type": "addgene-full", "addgene_id": "81802", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -31684,7 +39871,10 @@ "plasmid_name": "pDONR221-ZNF705B", "sequence-type": "depositor-full", "addgene_id": "101504", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101504.depositor-full.gb" }, @@ -31693,7 +39883,10 @@ "plasmid_name": "pDONR221-SLC47A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161393", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161393.addgene-full.gb" }, @@ -31702,7 +39895,10 @@ "plasmid_name": "pDONR223_AKT1_p.D44N", "sequence-type": "addgene-full", "addgene_id": "81456", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -31714,7 +39910,10 @@ "plasmid_name": "pLX-EF1a_GFP", "sequence-type": "addgene-full", "addgene_id": "221481", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221481.addgene-full.gb" }, @@ -31723,7 +39922,10 @@ "plasmid_name": "pDONR221-SLC10A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161073", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161073.addgene-full.gb" }, @@ -31732,7 +39934,10 @@ "plasmid_name": "plenti-px330-CRBN-T2-pGK-Pur", "sequence-type": "addgene-full", "addgene_id": "107383", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107383.addgene-full.gb" }, @@ -31741,7 +39946,10 @@ "plasmid_name": "p3E-rab26-CA", "sequence-type": "addgene-full", "addgene_id": "109746", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109746.addgene-full.gb" }, @@ -31750,7 +39958,10 @@ "plasmid_name": "TFORF3186", "sequence-type": "addgene-full", "addgene_id": "144662", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144662.addgene-full.gb" }, @@ -31759,7 +39970,10 @@ "plasmid_name": "pDONR221 Mak11", "sequence-type": "depositor-full", "addgene_id": "63761", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63761.depositor-full.gb" }, @@ -31768,7 +39982,10 @@ "plasmid_name": "pDONR221_SLC12A9", "sequence-type": "addgene-full", "addgene_id": "131897", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131897.addgene-full.gb" }, @@ -31777,7 +39994,10 @@ "plasmid_name": "pHAGE-EGFR-M766_A767insAI", "sequence-type": "addgene-full", "addgene_id": "116279", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116279.addgene-full.gb" }, @@ -31786,7 +40006,6 @@ "plasmid_name": "R777-E269 Hs.RASSF9", "sequence-type": "depositor-full", "addgene_id": "70553", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -31798,7 +40017,10 @@ "plasmid_name": "pDONR-53BP1 1-1972 28A", "sequence-type": "depositor-full", "addgene_id": "53447", - "references": [], + "references": [ + "https://doi.org/10.1038/nature12318", + "https://www.ncbi.nlm.nih.gov/pubmed/23760478" + ], "kit": null, "file": "data/addgene_plasmids/53447.depositor-full.gb" }, @@ -31807,7 +40029,10 @@ "plasmid_name": "HM001: pMVP (R4-R3) Cre", "sequence-type": "addgene-full", "addgene_id": "121740", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121740.addgene-full.gb" }, @@ -31816,7 +40041,10 @@ "plasmid_name": "pGGEV_+1_Linker", "sequence-type": "depositor-full", "addgene_id": "49280", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -31828,7 +40056,9 @@ "plasmid_name": "pMpGWB422", "sequence-type": "depositor-full", "addgene_id": "68687", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68687.depositor-full.gb" }, @@ -31837,7 +40067,10 @@ "plasmid_name": "pDONR223_FAIM_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82930", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82930.addgene-full.gb" }, @@ -31846,7 +40079,10 @@ "plasmid_name": "R620-M03-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-541)-His6 N501Y", "sequence-type": "addgene-full", "addgene_id": "170189", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/170189.addgene-full.gb" }, @@ -31855,7 +40091,10 @@ "plasmid_name": "A1-LCD+7R", "sequence-type": "addgene-full", "addgene_id": "178667", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178667.addgene-full.gb" }, @@ -31864,7 +40103,10 @@ "plasmid_name": "pDONR223_SAMHD1_WT", "sequence-type": "addgene-full", "addgene_id": "81899", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -31876,7 +40118,10 @@ "plasmid_name": "pDONR221-SLC38A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161308", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161308.addgene-full.gb" }, @@ -31885,7 +40130,10 @@ "plasmid_name": "TFORF3043", "sequence-type": "addgene-full", "addgene_id": "144519", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144519.addgene-full.gb" }, @@ -31894,7 +40142,10 @@ "plasmid_name": "pDONR221-SLC26A9_STOP", "sequence-type": "depositor-full", "addgene_id": "161306", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161306.depositor-full.gb" }, @@ -31903,7 +40154,10 @@ "plasmid_name": "CPSF4-1", "sequence-type": "addgene-full", "addgene_id": "155478", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155478.addgene-full.gb" }, @@ -31912,7 +40166,10 @@ "plasmid_name": "pHAGE-BRAF-T599_V600insP", "sequence-type": "addgene-full", "addgene_id": "116199", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116199.addgene-full.gb" }, @@ -31921,7 +40178,10 @@ "plasmid_name": "pHAGE-ALDH5A1__MAP3K5", "sequence-type": "addgene-full", "addgene_id": "116807", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116807.addgene-full.gb" }, @@ -31930,7 +40190,10 @@ "plasmid_name": "pENTR-KAT14-547-782", "sequence-type": "addgene-full", "addgene_id": "118376", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118376.addgene-full.gb" }, @@ -31939,7 +40202,10 @@ "plasmid_name": "pYPQ292-D570A-SRDX", "sequence-type": "addgene-full", "addgene_id": "129684", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129684.addgene-full.gb" }, @@ -31948,7 +40214,10 @@ "plasmid_name": "pHAGE-3FLAG-RAB5A", "sequence-type": "addgene-full", "addgene_id": "176488", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "file": "data/addgene_plasmids/176488.addgene-full.gb" }, @@ -31957,7 +40226,10 @@ "plasmid_name": "R989-X27-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12C", "sequence-type": "addgene-full", "addgene_id": "159547", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159547.addgene-full.gb" }, @@ -31966,7 +40238,10 @@ "plasmid_name": "EGFP-Hu_Plk5(W207F)", "sequence-type": "addgene-full", "addgene_id": "136320", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.00607-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21245385" + ], "kit": null, "file": "data/addgene_plasmids/136320.addgene-full.gb" }, @@ -31975,7 +40250,9 @@ "plasmid_name": "pLenti Lifeact-iRFP670 BlastR", "sequence-type": "addgene-full", "addgene_id": "84385", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "file": "data/addgene_plasmids/84385.addgene-full.gb" }, @@ -31984,7 +40261,10 @@ "plasmid_name": "pYPQ262m", "sequence-type": "addgene-full", "addgene_id": "161522", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-00827-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33398158" + ], "kit": null, "file": "data/addgene_plasmids/161522.addgene-full.gb" }, @@ -31993,7 +40273,10 @@ "plasmid_name": "HS-DN-Ect2", "sequence-type": "addgene-full", "addgene_id": "105956", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.08.062", + "https://www.ncbi.nlm.nih.gov/pubmed/26411683" + ], "kit": null, "file": "data/addgene_plasmids/105956.addgene-full.gb" }, @@ -32002,7 +40285,10 @@ "plasmid_name": "pLX304-BCL-XL-Y195F", "sequence-type": "addgene-full", "addgene_id": "203573", - "references": [], + "references": [ + "https://doi.org/10.1158/1078-0432.CCR-22-0669", + "https://www.ncbi.nlm.nih.gov/pubmed/35776130" + ], "kit": null, "file": "data/addgene_plasmids/203573.addgene-full.gb" }, @@ -32011,7 +40297,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir28-1", "sequence-type": "depositor-full", "addgene_id": "46684", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46684.depositor-full.gb" }, @@ -32020,7 +40309,6 @@ "plasmid_name": "BirA(R118G)-HA destination vector", "sequence-type": "addgene-full", "addgene_id": "53581", - "references": [], "kit": null, "file": "data/addgene_plasmids/53581.addgene-full.gb" }, @@ -32029,7 +40317,10 @@ "plasmid_name": "pDONR221 NLRP1 S1213A", "sequence-type": "addgene-full", "addgene_id": "166824", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166824.addgene-full.gb" }, @@ -32038,7 +40329,10 @@ "plasmid_name": "pDONR221 DPP9L", "sequence-type": "addgene-full", "addgene_id": "166790", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166790.addgene-full.gb" }, @@ -32047,7 +40341,10 @@ "plasmid_name": "pHAGE-PDGFRA-Y288C", "sequence-type": "addgene-full", "addgene_id": "116453", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116453.addgene-full.gb" }, @@ -32056,7 +40353,9 @@ "plasmid_name": "pRL056 pDESTattB_exorh:EGFP", "sequence-type": "addgene-full", "addgene_id": "213510", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.12.08.570868" + ], "kit": null, "file": "data/addgene_plasmids/213510.addgene-full.gb" }, @@ -32065,7 +40364,10 @@ "plasmid_name": "pMx/ATP11B-HA", "sequence-type": "addgene-full", "addgene_id": "209236", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209236.addgene-full.gb" }, @@ -32074,7 +40376,10 @@ "plasmid_name": "pTW087", "sequence-type": "addgene-full", "addgene_id": "115935", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115935.addgene-full.gb" }, @@ -32083,7 +40388,10 @@ "plasmid_name": "pENTR-L5-oPRE-L2", "sequence-type": "depositor-full", "addgene_id": "32414", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32414.depositor-full.gb" }, @@ -32092,7 +40400,10 @@ "plasmid_name": "pLVpuro-CMV-N-mCherry", "sequence-type": "addgene-full", "addgene_id": "123221", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123221.addgene-full.gb" }, @@ -32101,7 +40412,10 @@ "plasmid_name": "pME-eSIBR", "sequence-type": "depositor-full", "addgene_id": "71665", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkv1246", + "https://www.ncbi.nlm.nih.gov/pubmed/26582923" + ], "kit": null, "file": "data/addgene_plasmids/71665.depositor-full.gb" }, @@ -32110,7 +40424,6 @@ "plasmid_name": "p3E turquoise2", "sequence-type": "addgene-full", "addgene_id": "135212", - "references": [], "kit": null, "file": "data/addgene_plasmids/135212.addgene-full.gb" }, @@ -32119,7 +40432,10 @@ "plasmid_name": "pDESTtol2pACrymCherry", "sequence-type": "addgene-full", "addgene_id": "64023", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22385", + "https://www.ncbi.nlm.nih.gov/pubmed/23444339" + ], "kit": null, "file": "data/addgene_plasmids/64023.addgene-full.gb" }, @@ -32128,7 +40444,6 @@ "plasmid_name": "R777-E183 Hs.PIN1", "sequence-type": "depositor-full", "addgene_id": "70467", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -32140,7 +40455,6 @@ "plasmid_name": "IDG_CHRNB1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161659", - "references": [], "kit": null, "file": "data/addgene_plasmids/161659.addgene-full.gb" }, @@ -32149,7 +40463,10 @@ "plasmid_name": "pRU61", "sequence-type": "addgene-full", "addgene_id": "167692", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167692.addgene-full.gb" }, @@ -32158,7 +40475,10 @@ "plasmid_name": "pMuLE ENTR U6 stuffer sgRNA scaffold L5-L2", "sequence-type": "depositor-full", "addgene_id": "62130", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62130.depositor-full.gb" }, @@ -32167,7 +40487,10 @@ "plasmid_name": "pDONR221-SLC2A7_STOP", "sequence-type": "depositor-full", "addgene_id": "161232", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161232.depositor-full.gb" }, @@ -32176,7 +40499,6 @@ "plasmid_name": "pDONR221-CTSS", "sequence-type": "addgene-full", "addgene_id": "158445", - "references": [], "kit": null, "file": "data/addgene_plasmids/158445.addgene-full.gb" }, @@ -32185,7 +40507,10 @@ "plasmid_name": "pHAGE-CTCF", "sequence-type": "addgene-full", "addgene_id": "116728", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116728.addgene-full.gb" }, @@ -32194,7 +40519,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP9", "sequence-type": "addgene-full", "addgene_id": "169383", - "references": [], "kit": null, "file": "data/addgene_plasmids/169383.addgene-full.gb" }, @@ -32203,7 +40527,10 @@ "plasmid_name": "p7VP1", "sequence-type": "depositor-full", "addgene_id": "24726", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2010.05.006", + "https://www.ncbi.nlm.nih.gov/pubmed/20542254" + ], "kit": null, "file": "data/addgene_plasmids/24726.depositor-full.gb" }, @@ -32212,7 +40539,10 @@ "plasmid_name": "pAFMW-AthHEN1", "sequence-type": "addgene-full", "addgene_id": "104980", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4610", + "https://www.ncbi.nlm.nih.gov/pubmed/29481550" + ], "kit": null, "file": "data/addgene_plasmids/104980.addgene-full.gb" }, @@ -32221,7 +40551,10 @@ "plasmid_name": "pDONR221-LETMD1", "sequence-type": "addgene-full", "addgene_id": "132294", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132294.addgene-full.gb" }, @@ -32230,7 +40563,10 @@ "plasmid_name": "pAG414GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14167", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -32242,7 +40578,10 @@ "plasmid_name": "pENTR-li-p33_RS-CLIP", "sequence-type": "addgene-full", "addgene_id": "104634", - "references": [], + "references": [ + "https://doi.org/10.1080/2162402X.2018.1558663", + "https://www.ncbi.nlm.nih.gov/pubmed/30723591" + ], "kit": null, "file": "data/addgene_plasmids/104634.addgene-full.gb" }, @@ -32251,7 +40590,10 @@ "plasmid_name": "pLVX-EGFP-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128652", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128652.addgene-full.gb" }, @@ -32260,7 +40602,10 @@ "plasmid_name": "pDONR221_SLC8A2", "sequence-type": "addgene-full", "addgene_id": "132174", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132174.addgene-full.gb" }, @@ -32269,7 +40614,10 @@ "plasmid_name": "pDONR221-kcnk20", "sequence-type": "addgene-full", "addgene_id": "209002", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/209002.addgene-full.gb" }, @@ -32278,7 +40626,10 @@ "plasmid_name": "pMEnrp1bP1gfp", "sequence-type": "addgene-full", "addgene_id": "90129", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90129.addgene-full.gb" }, @@ -32287,7 +40638,10 @@ "plasmid_name": "pDONR223_CDKN1A_WT", "sequence-type": "addgene-full", "addgene_id": "82201", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82201.addgene-full.gb" }, @@ -32296,7 +40650,10 @@ "plasmid_name": "Flag-HA-USP21", "sequence-type": "addgene-full", "addgene_id": "22574", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22574.addgene-full.gb" }, @@ -32305,7 +40662,10 @@ "plasmid_name": "pENTR1A mKate2-hu_ncOGT K842M", "sequence-type": "addgene-full", "addgene_id": "154284", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154284.addgene-full.gb" }, @@ -32314,7 +40674,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PIK3C2G_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170597", - "references": [], "kit": null, "file": "data/addgene_plasmids/170597.addgene-full.gb" }, @@ -32323,7 +40682,10 @@ "plasmid_name": "pHAGE-RET-G533D", "sequence-type": "addgene-full", "addgene_id": "116667", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116667.addgene-full.gb" }, @@ -32332,7 +40694,6 @@ "plasmid_name": "R777-E145 Hs.NRAS", "sequence-type": "depositor-full", "addgene_id": "70429", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -32344,7 +40705,10 @@ "plasmid_name": "pGWB552", "sequence-type": "depositor-full", "addgene_id": "74882", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74882.depositor-full.gb" }, @@ -32353,7 +40717,10 @@ "plasmid_name": "pDONR223-TRPM7", "sequence-type": "addgene-full", "addgene_id": "23476", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -32365,7 +40732,10 @@ "plasmid_name": "pGW-GOI-TurboID-GFP", "sequence-type": "addgene-full", "addgene_id": "209379", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "file": "data/addgene_plasmids/209379.addgene-full.gb" }, @@ -32374,7 +40744,10 @@ "plasmid_name": "pHAGE-PIK3R1-E439delE", "sequence-type": "addgene-full", "addgene_id": "116587", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116587.addgene-full.gb" }, @@ -32383,7 +40756,10 @@ "plasmid_name": "pGWT35S-mCherry", "sequence-type": "addgene-full", "addgene_id": "182582", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "file": "data/addgene_plasmids/182582.addgene-full.gb" }, @@ -32392,7 +40768,10 @@ "plasmid_name": "pDONR223_CPXCR1_p.A56S", "sequence-type": "addgene-full", "addgene_id": "81333", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -32404,7 +40783,10 @@ "plasmid_name": "pAG304GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14400", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -32416,7 +40798,10 @@ "plasmid_name": "PTPRA_deltaD2-GFP fusion", "sequence-type": "addgene-full", "addgene_id": "139641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139641.addgene-full.gb" }, @@ -32425,7 +40810,10 @@ "plasmid_name": "pENTR221-FOS", "sequence-type": "addgene-full", "addgene_id": "79511", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79511.addgene-full.gb" }, @@ -32434,7 +40822,10 @@ "plasmid_name": "pDONR221_SLC25A41", "sequence-type": "addgene-full", "addgene_id": "132006", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132006.addgene-full.gb" }, @@ -32443,7 +40834,10 @@ "plasmid_name": "pCPP3416", "sequence-type": "addgene-full", "addgene_id": "128720", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128720.addgene-full.gb" }, @@ -32452,7 +40846,10 @@ "plasmid_name": "pDONR223_AKT3_WT", "sequence-type": "addgene-full", "addgene_id": "82093", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -32464,7 +40861,10 @@ "plasmid_name": "pg-ODD-EGFP", "sequence-type": "addgene-full", "addgene_id": "87211", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M113.500405", + "https://www.ncbi.nlm.nih.gov/pubmed/24394419" + ], "kit": null, "file": "data/addgene_plasmids/87211.addgene-full.gb" }, @@ -32473,7 +40873,10 @@ "plasmid_name": "pGFP-Rab8A[T22N]", "sequence-type": "addgene-full", "addgene_id": "24899", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.053", + "https://www.ncbi.nlm.nih.gov/pubmed/17574030" + ], "kit": null, "file": "data/addgene_plasmids/24899.addgene-full.gb" }, @@ -32482,7 +40885,10 @@ "plasmid_name": "eGFP L202 gRNA", "sequence-type": "addgene-full", "addgene_id": "119132", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-018-36739-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30679582" + ], "kit": null, "file": "data/addgene_plasmids/119132.addgene-full.gb" }, @@ -32491,7 +40897,10 @@ "plasmid_name": "TFORF3511", "sequence-type": "depositor-full", "addgene_id": "144987", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144987.depositor-full.gb" }, @@ -32500,7 +40909,9 @@ "plasmid_name": "p3E-mKate2-myc no-pA", "sequence-type": "depositor-full", "addgene_id": "80812", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80812.depositor-full.gb" }, @@ -32509,7 +40920,10 @@ "plasmid_name": "pACT2-Mrt4", "sequence-type": "addgene-full", "addgene_id": "99998", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99998.addgene-full.gb" }, @@ -32518,7 +40932,10 @@ "plasmid_name": "pDONR221 NLRP1 R726W", "sequence-type": "addgene-full", "addgene_id": "166819", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166819.addgene-full.gb" }, @@ -32527,7 +40944,6 @@ "plasmid_name": "R777-E299 Hs.RPS6KB2", "sequence-type": "depositor-full", "addgene_id": "70583", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -32539,7 +40955,10 @@ "plasmid_name": "pAG303GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14230", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -32551,7 +40970,10 @@ "plasmid_name": "PE_16: Para_lac_eG", "sequence-type": "addgene-full", "addgene_id": "104869", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104869.addgene-full.gb" }, @@ -32560,7 +40982,10 @@ "plasmid_name": "p5E-QUASM1", "sequence-type": "addgene-full", "addgene_id": "155114", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155114.addgene-full.gb" }, @@ -32569,7 +40994,9 @@ "plasmid_name": "pMpGWB329", "sequence-type": "depositor-full", "addgene_id": "68657", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68657.depositor-full.gb" }, @@ -32578,7 +41005,10 @@ "plasmid_name": "tetO-TBX20", "sequence-type": "addgene-full", "addgene_id": "170705", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170705.addgene-full.gb" }, @@ -32587,7 +41017,6 @@ "plasmid_name": "IDG_CLCN6_OE_1", "sequence-type": "addgene-full", "addgene_id": "161664", - "references": [], "kit": null, "file": "data/addgene_plasmids/161664.addgene-full.gb" }, @@ -32596,7 +41025,10 @@ "plasmid_name": "pDEST-hMeCP2-GFP", "sequence-type": "addgene-full", "addgene_id": "48078", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.038", + "https://www.ncbi.nlm.nih.gov/pubmed/23452848" + ], "kit": null, "file": "data/addgene_plasmids/48078.addgene-full.gb" }, @@ -32605,7 +41037,10 @@ "plasmid_name": "PE_10: Pxyl_tet_bD", "sequence-type": "addgene-full", "addgene_id": "113597", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113597.addgene-full.gb" }, @@ -32614,7 +41049,10 @@ "plasmid_name": "pDN0617 (pDEST-mEGFP C-term, NatR)", "sequence-type": "addgene-full", "addgene_id": "210484", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210484.addgene-full.gb" }, @@ -32623,7 +41061,10 @@ "plasmid_name": "Luciferase", "sequence-type": "addgene-full", "addgene_id": "213979", - "references": [], + "references": [ + "https://doi.org/10.1182/blood.2021011075", + "https://www.ncbi.nlm.nih.gov/pubmed/34019641" + ], "kit": null, "file": "data/addgene_plasmids/213979.addgene-full.gb" }, @@ -32632,7 +41073,10 @@ "plasmid_name": "pJJiaDEST-APEX2-GAL8", "sequence-type": "addgene-full", "addgene_id": "149519", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.009", + "https://www.ncbi.nlm.nih.gov/pubmed/29625033" + ], "kit": null, "file": "data/addgene_plasmids/149519.addgene-full.gb" }, @@ -32641,7 +41085,10 @@ "plasmid_name": "pHAGE-B2M", "sequence-type": "addgene-full", "addgene_id": "116715", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116715.addgene-full.gb" }, @@ -32650,7 +41097,10 @@ "plasmid_name": "pDONR223_TP53_p.I195F", "sequence-type": "addgene-full", "addgene_id": "81395", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -32662,7 +41112,10 @@ "plasmid_name": "pCFJ2309 - [1-2] ENTR - Fluor - mCardinal(1 intron, syntrons(3), NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159861", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159861.addgene-full.gb" }, @@ -32671,7 +41124,10 @@ "plasmid_name": "pHAGE-PIK3CA-P449_L455delPHGLEDL", "sequence-type": "addgene-full", "addgene_id": "116521", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116521.addgene-full.gb" }, @@ -32680,7 +41136,10 @@ "plasmid_name": "pENTR-TARDBP-G287A", "sequence-type": "addgene-full", "addgene_id": "141323", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "file": "data/addgene_plasmids/141323.addgene-full.gb" }, @@ -32689,7 +41148,10 @@ "plasmid_name": "pWZL Neo Myr Flag PIM1", "sequence-type": "addgene-full", "addgene_id": "20579", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20579.addgene-full.gb" }, @@ -32698,7 +41160,10 @@ "plasmid_name": "pLenti-PGK-flag-RAP1B-N17-puro", "sequence-type": "addgene-full", "addgene_id": "156169", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156169.addgene-full.gb" }, @@ -32707,7 +41172,10 @@ "plasmid_name": "pOO2-GW", "sequence-type": "depositor-full", "addgene_id": "135097", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09606", + "https://www.ncbi.nlm.nih.gov/pubmed/21107422" + ], "kit": null, "file": "data/addgene_plasmids/135097.depositor-full.gb" }, @@ -32716,7 +41184,10 @@ "plasmid_name": "pWS480", "sequence-type": "addgene-full", "addgene_id": "123028", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123028.addgene-full.gb" }, @@ -32725,7 +41196,10 @@ "plasmid_name": "pDONR221_SLC2A8", "sequence-type": "addgene-full", "addgene_id": "132149", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132149.addgene-full.gb" }, @@ -32734,7 +41208,10 @@ "plasmid_name": "p5E-pax3a-5.4k", "sequence-type": "addgene-full", "addgene_id": "164966", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164966.addgene-full.gb" }, @@ -32743,7 +41220,10 @@ "plasmid_name": "Flag-HA-JOSD3", "sequence-type": "addgene-full", "addgene_id": "22549", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22549.addgene-full.gb" }, @@ -32752,7 +41232,10 @@ "plasmid_name": "p5EmafbbE1", "sequence-type": "addgene-full", "addgene_id": "90114", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90114.addgene-full.gb" }, @@ -32761,7 +41244,10 @@ "plasmid_name": "pDONR201-Eps8L2_1-183", "sequence-type": "addgene-full", "addgene_id": "196527", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196527.addgene-full.gb" }, @@ -32770,7 +41256,10 @@ "plasmid_name": "pENTR-R4R3-3xmRuby-C", "sequence-type": "depositor-full", "addgene_id": "113757", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -32782,7 +41271,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS2A", "sequence-type": "addgene-full", "addgene_id": "145343", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145343.addgene-full.gb" }, @@ -32791,7 +41283,10 @@ "plasmid_name": "C417-E10: attB4-polyhedrinp>3xFLAG-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162936", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -32803,7 +41298,10 @@ "plasmid_name": "pPB-cT3G-cERP2-EGR1", "sequence-type": "addgene-full", "addgene_id": "192913", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192913.addgene-full.gb" }, @@ -32812,7 +41310,9 @@ "plasmid_name": "pMpGWB228", "sequence-type": "depositor-full", "addgene_id": "68619", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68619.depositor-full.gb" }, @@ -32821,7 +41321,10 @@ "plasmid_name": "pPB-DEST-R5R4-pNeo", "sequence-type": "addgene-full", "addgene_id": "141058", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141058.addgene-full.gb" }, @@ -32830,7 +41333,10 @@ "plasmid_name": "pDONR221_SLC7A10", "sequence-type": "addgene-full", "addgene_id": "132232", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132232.addgene-full.gb" }, @@ -32839,7 +41345,10 @@ "plasmid_name": "pENTR4 Ta-sro1 SR3", "sequence-type": "addgene-full", "addgene_id": "192547", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koac261", + "https://www.ncbi.nlm.nih.gov/pubmed/35980152" + ], "kit": null, "file": "data/addgene_plasmids/192547.addgene-full.gb" }, @@ -32848,7 +41357,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L5L2", "sequence-type": "addgene-full", "addgene_id": "113738", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -32860,7 +41372,10 @@ "plasmid_name": "pYPQ154", "sequence-type": "depositor-full", "addgene_id": "69305", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69305.depositor-full.gb" }, @@ -32869,7 +41384,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L1L4", "sequence-type": "addgene-full", "addgene_id": "113736", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -32881,7 +41399,10 @@ "plasmid_name": "pDEST17-TARG1", "sequence-type": "addgene-full", "addgene_id": "172594", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172594.addgene-full.gb" }, @@ -32890,7 +41411,10 @@ "plasmid_name": "pDONR223_NFKB1_WT", "sequence-type": "addgene-full", "addgene_id": "82149", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82149.addgene-full.gb" }, @@ -32899,7 +41423,10 @@ "plasmid_name": "MAC_N_ISX", "sequence-type": "addgene-full", "addgene_id": "187733", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187733.addgene-full.gb" }, @@ -32908,7 +41435,10 @@ "plasmid_name": "pDONR223_RAC1_p.P29S", "sequence-type": "addgene-full", "addgene_id": "81300", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -32920,7 +41450,10 @@ "plasmid_name": "pLenti-jAspSnFR3-mRuby3-NLS", "sequence-type": "addgene-full", "addgene_id": "203494", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "file": "data/addgene_plasmids/203494.addgene-full.gb" }, @@ -32929,7 +41462,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (G20V)", "sequence-type": "addgene-full", "addgene_id": "119308", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119308.addgene-full.gb" }, @@ -32938,7 +41474,10 @@ "plasmid_name": "pDL10", "sequence-type": "addgene-full", "addgene_id": "175892", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175892.addgene-full.gb" }, @@ -32947,7 +41486,6 @@ "plasmid_name": "R777-E265 Hs.RASSF7", "sequence-type": "depositor-full", "addgene_id": "70549", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -32959,7 +41497,10 @@ "plasmid_name": "C511-E02: attB5r-NanoLuc-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162938", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -32971,7 +41512,10 @@ "plasmid_name": "pUC-DEST-R1R2", "sequence-type": "addgene-full", "addgene_id": "141056", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141056.addgene-full.gb" }, @@ -32980,7 +41524,10 @@ "plasmid_name": "pMH-MYC", "sequence-type": "addgene-full", "addgene_id": "101765", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "file": "data/addgene_plasmids/101765.addgene-full.gb" }, @@ -32989,7 +41536,10 @@ "plasmid_name": "pLenti-PGK-RAP1A-E63-puro", "sequence-type": "addgene-full", "addgene_id": "156167", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156167.addgene-full.gb" }, @@ -32998,7 +41548,10 @@ "plasmid_name": "pDONR221_SLC35A2", "sequence-type": "addgene-full", "addgene_id": "132147", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132147.addgene-full.gb" }, @@ -33007,7 +41560,10 @@ "plasmid_name": "pWS2247", "sequence-type": "addgene-full", "addgene_id": "123026", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123026.addgene-full.gb" }, @@ -33016,7 +41572,6 @@ "plasmid_name": "MECP2 - P152R in pENTR", "sequence-type": "addgene-full", "addgene_id": "216595", - "references": [], "kit": null, "file": "data/addgene_plasmids/216595.addgene-full.gb" }, @@ -33025,7 +41580,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(K72A)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128661", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128661.addgene-full.gb" }, @@ -33034,7 +41592,10 @@ "plasmid_name": "Flag-HA-JOSD1", "sequence-type": "addgene-full", "addgene_id": "22547", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22547.addgene-full.gb" }, @@ -33043,7 +41604,10 @@ "plasmid_name": "pDONR223_RELB_WT", "sequence-type": "addgene-full", "addgene_id": "82232", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82232.addgene-full.gb" }, @@ -33052,7 +41616,10 @@ "plasmid_name": "pGL4_EGR1p-BC0129-luc2", "sequence-type": "addgene-full", "addgene_id": "214645", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214645.addgene-full.gb" }, @@ -33061,7 +41628,10 @@ "plasmid_name": "pDONR201-Eps8L2_297-370", "sequence-type": "addgene-full", "addgene_id": "196529", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196529.addgene-full.gb" }, @@ -33070,7 +41640,10 @@ "plasmid_name": "pDEST-HisMBP", "sequence-type": "addgene-full", "addgene_id": "11085", - "references": [], + "references": [ + "https://doi.org/10.1110/ps.051718605", + "https://www.ncbi.nlm.nih.gov/pubmed/16322578" + ], "kit": null, "file": "data/addgene_plasmids/11085.addgene-full.gb" }, @@ -33079,7 +41652,10 @@ "plasmid_name": "MAC_N_LHX1", "sequence-type": "addgene-full", "addgene_id": "167775", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167775.addgene-full.gb" }, @@ -33088,7 +41664,10 @@ "plasmid_name": "pDONR-IAA15_no stop", "sequence-type": "depositor-full", "addgene_id": "83853", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83853.depositor-full.gb" }, @@ -33097,7 +41676,10 @@ "plasmid_name": "pLX302 OAS2-V5 puro", "sequence-type": "addgene-full", "addgene_id": "158642", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158642.addgene-full.gb" }, @@ -33106,7 +41688,6 @@ "plasmid_name": "pMS051", "sequence-type": "addgene-full", "addgene_id": "137025", - "references": [], "kit": null, "file": "data/addgene_plasmids/137025.addgene-full.gb" }, @@ -33115,7 +41696,10 @@ "plasmid_name": "p5E_ngn1_LSE_C", "sequence-type": "addgene-full", "addgene_id": "199395", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "file": "data/addgene_plasmids/199395.addgene-full.gb" }, @@ -33124,7 +41708,10 @@ "plasmid_name": "pJH200_pE12_hyCal7-eGFP", "sequence-type": "addgene-full", "addgene_id": "160413", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160413.addgene-full.gb" }, @@ -33133,7 +41720,10 @@ "plasmid_name": "PE_08: Plux_tet_bD", "sequence-type": "addgene-full", "addgene_id": "113599", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113599.addgene-full.gb" }, @@ -33142,7 +41732,6 @@ "plasmid_name": "pLEX307-TMPRSS11D-blast", "sequence-type": "addgene-full", "addgene_id": "158476", - "references": [], "kit": null, "file": "data/addgene_plasmids/158476.addgene-full.gb" }, @@ -33151,7 +41740,10 @@ "plasmid_name": "CMV-VARNAM", "sequence-type": "addgene-full", "addgene_id": "115552", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-018-0188-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30420685" + ], "kit": null, "file": "data/addgene_plasmids/115552.addgene-full.gb" }, @@ -33160,7 +41752,10 @@ "plasmid_name": "pDONR221_SLC39A2", "sequence-type": "addgene-full", "addgene_id": "132093", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132093.addgene-full.gb" }, @@ -33169,7 +41764,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-Swa1::RfA-HA", "sequence-type": "addgene-full", "addgene_id": "186405", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186405.addgene-full.gb" }, @@ -33178,7 +41776,10 @@ "plasmid_name": "pJJiaDEST-APEX2", "sequence-type": "addgene-full", "addgene_id": "149517", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.009", + "https://www.ncbi.nlm.nih.gov/pubmed/29625033" + ], "kit": null, "file": "data/addgene_plasmids/149517.addgene-full.gb" }, @@ -33187,7 +41788,6 @@ "plasmid_name": "R777-E223 Hs.RAPGEF1", "sequence-type": "depositor-full", "addgene_id": "70507", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -33199,7 +41799,6 @@ "plasmid_name": "pENTR-R2L3-IRES-BSD-pA", "sequence-type": "addgene-full", "addgene_id": "139534", - "references": [], "kit": null, "file": "data/addgene_plasmids/139534.addgene-full.gb" }, @@ -33208,7 +41807,10 @@ "plasmid_name": "pcDNA_DENV2-NS2B3_V5", "sequence-type": "addgene-full", "addgene_id": "115906", - "references": [], + "references": [ + "https://doi.org/10.3389/fcimb.2022.926036", + "https://www.ncbi.nlm.nih.gov/pubmed/36310878" + ], "kit": null, "file": "data/addgene_plasmids/115906.addgene-full.gb" }, @@ -33217,7 +41819,10 @@ "plasmid_name": "CH110: Plas_lac_bD", "sequence-type": "addgene-full", "addgene_id": "104867", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104867.addgene-full.gb" }, @@ -33226,7 +41831,10 @@ "plasmid_name": "p3E-Dusp6DM_S159/197A", "sequence-type": "depositor-full", "addgene_id": "67684", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137919", + "https://www.ncbi.nlm.nih.gov/pubmed/27578780" + ], "kit": null, "file": "data/addgene_plasmids/67684.depositor-full.gb" }, @@ -33235,7 +41843,10 @@ "plasmid_name": "R701-X71-527: His6-tev-Hs.CALM1(1-80)", "sequence-type": "addgene-full", "addgene_id": "159694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bpj.2019.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30846362" + ], "kit": null, "file": "data/addgene_plasmids/159694.addgene-full.gb" }, @@ -33244,7 +41855,10 @@ "plasmid_name": "hsp70:EB3-mKate2", "sequence-type": "addgene-full", "addgene_id": "105965", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105965.addgene-full.gb" }, @@ -33253,7 +41867,10 @@ "plasmid_name": "pHAGE-PIK3CA-C971R", "sequence-type": "addgene-full", "addgene_id": "116460", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116460.addgene-full.gb" }, @@ -33262,7 +41879,10 @@ "plasmid_name": "pHAGE-Mch-MAP1LC3B", "sequence-type": "addgene-full", "addgene_id": "201924", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "file": "data/addgene_plasmids/201924.addgene-full.gb" }, @@ -33271,7 +41891,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-Membrane", "sequence-type": "depositor-full", "addgene_id": "168840", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168840.depositor-full.gb" }, @@ -33280,7 +41903,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) SDC3", "sequence-type": "addgene-full", "addgene_id": "107501", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107501.addgene-full.gb" }, @@ -33289,7 +41915,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP8", "sequence-type": "addgene-full", "addgene_id": "141262", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141262.addgene-full.gb" }, @@ -33298,7 +41927,10 @@ "plasmid_name": "pDONR223-PRKAA2", "sequence-type": "addgene-full", "addgene_id": "23671", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -33310,7 +41942,10 @@ "plasmid_name": "pDONR221 NLRP1 A66V", "sequence-type": "addgene-full", "addgene_id": "166817", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166817.addgene-full.gb" }, @@ -33319,7 +41954,10 @@ "plasmid_name": "pHAGE-PTK2__NCR3", "sequence-type": "addgene-full", "addgene_id": "116834", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116834.addgene-full.gb" }, @@ -33328,7 +41966,10 @@ "plasmid_name": "pHAGE-PTEN", "sequence-type": "addgene-full", "addgene_id": "116780", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116780.addgene-full.gb" }, @@ -33337,7 +41978,10 @@ "plasmid_name": "pDONR221_SLC26A2", "sequence-type": "addgene-full", "addgene_id": "132008", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132008.addgene-full.gb" }, @@ -33346,7 +41990,10 @@ "plasmid_name": "pVL-FLAG/His LCOR", "sequence-type": "addgene-full", "addgene_id": "114450", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "file": "data/addgene_plasmids/114450.addgene-full.gb" }, @@ -33355,7 +42002,10 @@ "plasmid_name": "pDest-636", "sequence-type": "addgene-full", "addgene_id": "159574", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159574.addgene-full.gb" }, @@ -33364,7 +42014,10 @@ "plasmid_name": "pDONR223-MAP2K7", "sequence-type": "addgene-full", "addgene_id": "23798", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -33376,7 +42029,10 @@ "plasmid_name": "pCMB-ERr", "sequence-type": "depositor-full", "addgene_id": "61171", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61171.depositor-full.gb" }, @@ -33385,7 +42041,10 @@ "plasmid_name": "pLBD16-GW", "sequence-type": "addgene-full", "addgene_id": "209377", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209377.addgene-full.gb" }, @@ -33394,7 +42053,10 @@ "plasmid_name": "pDONR221_SLC3A1", "sequence-type": "addgene-full", "addgene_id": "132201", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132201.addgene-full.gb" }, @@ -33403,7 +42065,10 @@ "plasmid_name": "pHAGE-PIK3R1-F398Lfs*6", "sequence-type": "addgene-full", "addgene_id": "116589", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116589.addgene-full.gb" }, @@ -33412,7 +42077,10 @@ "plasmid_name": "plIVMD163", "sequence-type": "addgene-full", "addgene_id": "160935", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2002650117", + "https://www.ncbi.nlm.nih.gov/pubmed/33037152" + ], "kit": null, "file": "data/addgene_plasmids/160935.addgene-full.gb" }, @@ -33421,7 +42089,10 @@ "plasmid_name": "Flag-HA-USP33", "sequence-type": "addgene-full", "addgene_id": "22601", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22601.addgene-full.gb" }, @@ -33430,7 +42101,10 @@ "plasmid_name": "pDONR223_CDC42_p.Q61L", "sequence-type": "addgene-full", "addgene_id": "82174", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82174.addgene-full.gb" }, @@ -33439,7 +42113,6 @@ "plasmid_name": "R777-E053 Hs.EGFR", "sequence-type": "depositor-full", "addgene_id": "70337", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -33451,7 +42124,10 @@ "plasmid_name": "pKLV2-U6gRNASAM(gEmpty)-TREGFP-PGKpuroBFP-W", "sequence-type": "addgene-full", "addgene_id": "112926", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-018-1581-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30477585" + ], "kit": null, "file": "data/addgene_plasmids/112926.addgene-full.gb" }, @@ -33460,7 +42136,10 @@ "plasmid_name": "C232-E25: attB2r-mVenus-attB3", "sequence-type": "addgene-full", "addgene_id": "162905", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -33472,7 +42151,10 @@ "plasmid_name": "pDONR223_AKT1_WT", "sequence-type": "addgene-full", "addgene_id": "82294", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82294.addgene-full.gb" }, @@ -33481,7 +42163,10 @@ "plasmid_name": "pmCellFree_KA2", "sequence-type": "addgene-full", "addgene_id": "145370", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145370.addgene-full.gb" }, @@ -33490,7 +42175,10 @@ "plasmid_name": "pDESTmycIGF2BP3", "sequence-type": "addgene-full", "addgene_id": "19879", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19879.addgene-full.gb" }, @@ -33499,7 +42187,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PIP5K1B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170599", - "references": [], "kit": null, "file": "data/addgene_plasmids/170599.addgene-full.gb" }, @@ -33508,7 +42195,10 @@ "plasmid_name": "pAG413GAL-ccdB", "sequence-type": "addgene-full", "addgene_id": "14141", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -33520,7 +42210,10 @@ "plasmid_name": "PB-TRE3G-SOX17", "sequence-type": "addgene-full", "addgene_id": "104541", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2017.12.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29320761" + ], "kit": null, "file": "data/addgene_plasmids/104541.addgene-full.gb" }, @@ -33529,7 +42222,10 @@ "plasmid_name": "pDONR223 GABARAP WT", "sequence-type": "addgene-full", "addgene_id": "123080", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123080.addgene-full.gb" }, @@ -33538,7 +42234,10 @@ "plasmid_name": "pPB-cT3G-cERP2-TOX2", "sequence-type": "addgene-full", "addgene_id": "192920", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192920.addgene-full.gb" }, @@ -33547,7 +42246,10 @@ "plasmid_name": "pHAGE-RET-L730I", "sequence-type": "addgene-full", "addgene_id": "116669", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116669.addgene-full.gb" }, @@ -33556,7 +42258,10 @@ "plasmid_name": "pGWB412", "sequence-type": "depositor-full", "addgene_id": "74806", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74806.depositor-full.gb" }, @@ -33565,7 +42270,6 @@ "plasmid_name": "His8:MBP-tev-Arg-e\u0394K-Flv", "sequence-type": "addgene-full", "addgene_id": "83396", - "references": [], "kit": null, "file": "data/addgene_plasmids/83396.addgene-full.gb" }, @@ -33574,7 +42278,10 @@ "plasmid_name": "pMElmo2P1gfp", "sequence-type": "addgene-full", "addgene_id": "90127", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90127.addgene-full.gb" }, @@ -33583,7 +42290,10 @@ "plasmid_name": "pHAGE-mKeima-LGALS3", "sequence-type": "addgene-full", "addgene_id": "175780", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175780.addgene-full.gb" }, @@ -33592,7 +42302,10 @@ "plasmid_name": "pDONR221-SV2C_STOP", "sequence-type": "addgene-full", "addgene_id": "161463", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161463.addgene-full.gb" }, @@ -33601,7 +42314,10 @@ "plasmid_name": "pMAL", "sequence-type": "addgene-full", "addgene_id": "161783", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2013.11.021", + "https://www.ncbi.nlm.nih.gov/pubmed/24388174" + ], "kit": null, "file": "data/addgene_plasmids/161783.addgene-full.gb" }, @@ -33610,7 +42326,10 @@ "plasmid_name": "pCFJ2308 - [1-2] ENTR - Fluor - mNeon(1 intron, syntrons(3), NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159852", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159852.addgene-full.gb" }, @@ -33619,7 +42338,9 @@ "plasmid_name": "pMpGWB130", "sequence-type": "depositor-full", "addgene_id": "68584", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68584.depositor-full.gb" }, @@ -33628,7 +42349,10 @@ "plasmid_name": "MAC_N_ELF4", "sequence-type": "addgene-full", "addgene_id": "167748", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167748.addgene-full.gb" }, @@ -33637,7 +42361,10 @@ "plasmid_name": "pHAGE-PIK3CA-M1043V", "sequence-type": "addgene-full", "addgene_id": "116512", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116512.addgene-full.gb" }, @@ -33646,7 +42373,10 @@ "plasmid_name": "pCG150", "sequence-type": "addgene-full", "addgene_id": "17247", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/17247.addgene-full.gb" }, @@ -33655,7 +42385,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK11_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198005", - "references": [], "kit": null, "file": "data/addgene_plasmids/198005.addgene-full.gb" }, @@ -33664,7 +42393,10 @@ "plasmid_name": "pEnt L1L3-MCS", "sequence-type": "depositor-full", "addgene_id": "26798", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "file": "data/addgene_plasmids/26798.depositor-full.gb" }, @@ -33673,7 +42405,10 @@ "plasmid_name": "MAC_C_PTH2", "sequence-type": "addgene-full", "addgene_id": "111674", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111674.addgene-full.gb" }, @@ -33682,7 +42417,10 @@ "plasmid_name": "p35S-mKO1", "sequence-type": "addgene-full", "addgene_id": "182723", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182723.addgene-full.gb" }, @@ -33691,7 +42429,6 @@ "plasmid_name": "R777-E095 Hs.FNTB", "sequence-type": "depositor-full", "addgene_id": "70379", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -33703,7 +42440,10 @@ "plasmid_name": "pHAGE-CDKN2A", "sequence-type": "addgene-full", "addgene_id": "116726", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116726.addgene-full.gb" }, @@ -33712,7 +42452,10 @@ "plasmid_name": "pMx/ATP11C-b-HA", "sequence-type": "addgene-full", "addgene_id": "209238", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258523", + "https://www.ncbi.nlm.nih.gov/pubmed/34528675" + ], "kit": null, "file": "data/addgene_plasmids/209238.addgene-full.gb" }, @@ -33721,7 +42464,10 @@ "plasmid_name": "pE1n", "sequence-type": "depositor-full", "addgene_id": "17441", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17441.depositor-full.gb" }, @@ -33730,7 +42476,10 @@ "plasmid_name": "S2_AscI_HA-gateway_Bsu36I", "sequence-type": "addgene-full", "addgene_id": "128468", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "file": "data/addgene_plasmids/128468.addgene-full.gb" }, @@ -33739,7 +42488,6 @@ "plasmid_name": "IDG_CLIC3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161657", - "references": [], "kit": null, "file": "data/addgene_plasmids/161657.addgene-full.gb" }, @@ -33748,7 +42496,10 @@ "plasmid_name": "pGWB506", "sequence-type": "depositor-full", "addgene_id": "74848", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74848.depositor-full.gb" }, @@ -33757,7 +42508,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-HNRNPU", "sequence-type": "addgene-full", "addgene_id": "38068", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38068.addgene-full.gb" }, @@ -33766,7 +42520,10 @@ "plasmid_name": "pAG303GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14350", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -33778,7 +42535,10 @@ "plasmid_name": "pLV-CMVtight-PLXNB2 iOE", "sequence-type": "addgene-full", "addgene_id": "176849", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/176849.addgene-full.gb" }, @@ -33787,7 +42547,10 @@ "plasmid_name": "dpYPQ230-D156R-ABE8", "sequence-type": "addgene-full", "addgene_id": "195569", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "file": "data/addgene_plasmids/195569.addgene-full.gb" }, @@ -33796,7 +42559,10 @@ "plasmid_name": "pDONR223_SPATA8_p.E18K", "sequence-type": "addgene-full", "addgene_id": "81272", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -33808,7 +42574,10 @@ "plasmid_name": "pMXs-ms-Sox17", "sequence-type": "depositor-full", "addgene_id": "50781", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "file": "data/addgene_plasmids/50781.depositor-full.gb" }, @@ -33817,7 +42586,10 @@ "plasmid_name": "LIIbeta R 1-2", "sequence-type": "depositor-full", "addgene_id": "54357", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54357.depositor-full.gb" }, @@ -33826,7 +42598,10 @@ "plasmid_name": "ath5:GFP-CAAX", "sequence-type": "addgene-full", "addgene_id": "105958", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105958.addgene-full.gb" }, @@ -33835,7 +42610,10 @@ "plasmid_name": "PLEX_313 SLC31A1", "sequence-type": "addgene-full", "addgene_id": "184493", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abf0529", + "https://www.ncbi.nlm.nih.gov/pubmed/35298263" + ], "kit": null, "file": "data/addgene_plasmids/184493.addgene-full.gb" }, @@ -33844,7 +42622,10 @@ "plasmid_name": "pcDNA-h-mmPtch1-B-NNQ-HA-GFP", "sequence-type": "addgene-full", "addgene_id": "121164", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.10.026", + "https://www.ncbi.nlm.nih.gov/pubmed/30415841" + ], "kit": null, "file": "data/addgene_plasmids/121164.addgene-full.gb" }, @@ -33853,7 +42634,6 @@ "plasmid_name": "pREP4xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79016", - "references": [], "kit": null, "file": "data/addgene_plasmids/79016.depositor-full.gb" }, @@ -33862,7 +42642,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag5_nostop", "sequence-type": "addgene-full", "addgene_id": "153177", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153177.addgene-full.gb" }, @@ -33871,7 +42654,10 @@ "plasmid_name": "pHAGE DN Cullin3", "sequence-type": "addgene-full", "addgene_id": "41913", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2011.09.019", + "https://www.ncbi.nlm.nih.gov/pubmed/21963094" + ], "kit": null, "file": "data/addgene_plasmids/41913.addgene-full.gb" }, @@ -33880,7 +42666,10 @@ "plasmid_name": "pCM5.63", "sequence-type": "depositor-full", "addgene_id": "19373", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19373.depositor-full.gb" }, @@ -33889,7 +42678,10 @@ "plasmid_name": "pCPP5571", "sequence-type": "addgene-full", "addgene_id": "128713", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128713.addgene-full.gb" }, @@ -33898,7 +42690,10 @@ "plasmid_name": "pDONR221_SLC22A17", "sequence-type": "addgene-full", "addgene_id": "132035", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132035.addgene-full.gb" }, @@ -33907,7 +42702,10 @@ "plasmid_name": "pCFJ914", "sequence-type": "depositor-full", "addgene_id": "44489", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44489.depositor-full.gb" }, @@ -33916,7 +42714,10 @@ "plasmid_name": "pENTR-actin", "sequence-type": "addgene-full", "addgene_id": "118378", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118378.addgene-full.gb" }, @@ -33925,7 +42726,6 @@ "plasmid_name": "pDONR221-zgc:152904", "sequence-type": "addgene-full", "addgene_id": "192740", - "references": [], "kit": null, "file": "data/addgene_plasmids/192740.addgene-full.gb" }, @@ -33934,7 +42734,10 @@ "plasmid_name": "JDW 858 (pTol2-Kdrl-V5-mScarlet-KRAS4A-WT--AC-Cerulean)", "sequence-type": "addgene-full", "addgene_id": "180468", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/180468.addgene-full.gb" }, @@ -33943,7 +42746,10 @@ "plasmid_name": "R989-X29-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12V", "sequence-type": "addgene-full", "addgene_id": "159549", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159549.addgene-full.gb" }, @@ -33952,7 +42758,6 @@ "plasmid_name": "Hs.HRAS G12V", "sequence-type": "depositor-full", "addgene_id": "83184", - "references": [], "kit": null, "file": "data/addgene_plasmids/83184.depositor-full.gb" }, @@ -33961,7 +42766,10 @@ "plasmid_name": "A1-LCD-3R+3K", "sequence-type": "addgene-full", "addgene_id": "178669", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178669.addgene-full.gb" }, @@ -33970,7 +42778,10 @@ "plasmid_name": "pDONR223_WNK3_p.V488A", "sequence-type": "addgene-full", "addgene_id": "81723", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -33982,7 +42793,6 @@ "plasmid_name": "pPB-CAG-NPHP1", "sequence-type": "addgene-full", "addgene_id": "209769", - "references": [], "kit": null, "file": "data/addgene_plasmids/209769.addgene-full.gb" }, @@ -33991,7 +42801,10 @@ "plasmid_name": "pDONR221-SLC4A9_STOP", "sequence-type": "depositor-full", "addgene_id": "161382", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161382.depositor-full.gb" }, @@ -34000,7 +42813,10 @@ "plasmid_name": "TFORF3041", "sequence-type": "addgene-full", "addgene_id": "144517", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144517.addgene-full.gb" }, @@ -34009,7 +42825,10 @@ "plasmid_name": "PB-Mycn", "sequence-type": "addgene-full", "addgene_id": "60667", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "file": "data/addgene_plasmids/60667.addgene-full.gb" }, @@ -34018,7 +42837,10 @@ "plasmid_name": "pHAGE-BRAF-T241P", "sequence-type": "addgene-full", "addgene_id": "116197", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116197.addgene-full.gb" }, @@ -34027,7 +42849,10 @@ "plasmid_name": "CMV5.1-SARS-CoV-2 Nsp3", "sequence-type": "addgene-full", "addgene_id": "204205", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2023.105346", + "https://www.ncbi.nlm.nih.gov/pubmed/37838170" + ], "kit": null, "file": "data/addgene_plasmids/204205.addgene-full.gb" }, @@ -34036,7 +42861,10 @@ "plasmid_name": "TFORF3467", "sequence-type": "addgene-full", "addgene_id": "144943", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144943.addgene-full.gb" }, @@ -34045,7 +42873,10 @@ "plasmid_name": "pECIA14", "sequence-type": "depositor-full", "addgene_id": "47051", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.06.006", + "https://www.ncbi.nlm.nih.gov/pubmed/23827685" + ], "kit": null, "file": "data/addgene_plasmids/47051.depositor-full.gb" }, @@ -34054,7 +42885,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 NSP2_nostop", "sequence-type": "addgene-full", "addgene_id": "168571", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168571.addgene-full.gb" }, @@ -34063,7 +42897,10 @@ "plasmid_name": "pAG414GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14264", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -34075,7 +42912,10 @@ "plasmid_name": "pDE43-MCKq20", "sequence-type": "depositor-full", "addgene_id": "27334", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "file": "data/addgene_plasmids/27334.depositor-full.gb" }, @@ -34084,7 +42924,10 @@ "plasmid_name": "pDONR221-SLC31A1_STOP", "sequence-type": "depositor-full", "addgene_id": "161418", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161418.depositor-full.gb" }, @@ -34093,7 +42936,10 @@ "plasmid_name": "pDONR221-eGFP_mito", "sequence-type": "addgene-full", "addgene_id": "221414", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221414.addgene-full.gb" }, @@ -34102,7 +42948,9 @@ "plasmid_name": "pMpGWB212", "sequence-type": "depositor-full", "addgene_id": "68603", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68603.depositor-full.gb" }, @@ -34111,7 +42959,10 @@ "plasmid_name": "AKT-APEX2-P2A-mKate2", "sequence-type": "depositor-full", "addgene_id": "67654", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67654.depositor-full.gb" }, @@ -34120,7 +42971,10 @@ "plasmid_name": "pDONR223_PIK3R3_p.R383C", "sequence-type": "addgene-full", "addgene_id": "81458", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -34132,7 +42986,10 @@ "plasmid_name": "JT504: pMVP/SB/eGFP-DEST", "sequence-type": "addgene-full", "addgene_id": "121861", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121861.addgene-full.gb" }, @@ -34141,7 +42998,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDKL2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158181", - "references": [], "kit": null, "file": "data/addgene_plasmids/158181.addgene-full.gb" }, @@ -34150,7 +43006,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir193b-wt", "sequence-type": "depositor-full", "addgene_id": "46734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46734.depositor-full.gb" }, @@ -34159,7 +43018,10 @@ "plasmid_name": "pDONR221_SLC16A3", "sequence-type": "addgene-full", "addgene_id": "131899", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131899.addgene-full.gb" }, @@ -34168,7 +43030,10 @@ "plasmid_name": "SITS-mCherry-ccdb", "sequence-type": "addgene-full", "addgene_id": "118629", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/118629.addgene-full.gb" }, @@ -34177,7 +43042,10 @@ "plasmid_name": "p3E-rab38a-CA", "sequence-type": "addgene-full", "addgene_id": "109748", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109748.addgene-full.gb" }, @@ -34186,7 +43054,10 @@ "plasmid_name": "Cavin4a in pBluescript(SK+)", "sequence-type": "addgene-full", "addgene_id": "126567", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201905065", + "https://www.ncbi.nlm.nih.gov/pubmed/34633413" + ], "kit": null, "file": "data/addgene_plasmids/126567.addgene-full.gb" }, @@ -34195,7 +43066,10 @@ "plasmid_name": "pLX302-JSP1-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87773", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "file": "data/addgene_plasmids/87773.addgene-full.gb" }, @@ -34204,7 +43078,10 @@ "plasmid_name": "MiniCoopR mitfa:KIT K642E", "sequence-type": "addgene-full", "addgene_id": "118849", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118849.addgene-full.gb" }, @@ -34214,8 +43091,8 @@ "sequence-type": "depositor-full", "addgene_id": "19889", "references": [ - "https://doi.org/10.1038/nmeth.2889", - "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" ], "kit": null, "file": "data/addgene_plasmids/19889.depositor-full.gb" @@ -34225,7 +43102,10 @@ "plasmid_name": "pDONR223_IDH2_p.S249G", "sequence-type": "addgene-full", "addgene_id": "82871", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82871.addgene-full.gb" }, @@ -34234,7 +43114,6 @@ "plasmid_name": "R777-E315 Hs.SHOC2", "sequence-type": "depositor-full", "addgene_id": "70599", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -34246,7 +43125,10 @@ "plasmid_name": "pDONR221-SLC38A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161249", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161249.addgene-full.gb" }, @@ -34255,7 +43137,6 @@ "plasmid_name": "pDEST26-MSRA-C-HA", "sequence-type": "addgene-full", "addgene_id": "195177", - "references": [], "kit": null, "file": "data/addgene_plasmids/195177.addgene-full.gb" }, @@ -34264,7 +43145,6 @@ "plasmid_name": "pCWXPGR-pTF-Ngn3", "sequence-type": "addgene-full", "addgene_id": "114308", - "references": [], "kit": null, "file": "data/addgene_plasmids/114308.addgene-full.gb" }, @@ -34273,7 +43153,10 @@ "plasmid_name": "TFORF2982", "sequence-type": "addgene-full", "addgene_id": "144458", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144458.addgene-full.gb" }, @@ -34282,7 +43165,10 @@ "plasmid_name": "DHX37", "sequence-type": "addgene-full", "addgene_id": "155539", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155539.addgene-full.gb" }, @@ -34291,7 +43177,10 @@ "plasmid_name": "DV-GFP-Rab38-WT-pDEST53", "sequence-type": "addgene-full", "addgene_id": "15669", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.072087599", + "https://www.ncbi.nlm.nih.gov/pubmed/11917121" + ], "kit": null, "file": "data/addgene_plasmids/15669.addgene-full.gb" }, @@ -34300,7 +43189,6 @@ "plasmid_name": "pCW57.1_V5_FLAG_Ct", "sequence-type": "addgene-full", "addgene_id": "194075", - "references": [], "kit": null, "file": "data/addgene_plasmids/194075.addgene-full.gb" }, @@ -34309,7 +43197,9 @@ "plasmid_name": "pME-nlsGFP-P2A", "sequence-type": "depositor-full", "addgene_id": "80808", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80808.depositor-full.gb" }, @@ -34318,7 +43208,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND E274R + S297A", "sequence-type": "addgene-full", "addgene_id": "169968", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169968.addgene-full.gb" }, @@ -34327,7 +43220,10 @@ "plasmid_name": "pDONR223 ATG3 K243R", "sequence-type": "addgene-full", "addgene_id": "129294", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129294.addgene-full.gb" }, @@ -34336,7 +43232,10 @@ "plasmid_name": "pDONR223_EYS_p.H466N", "sequence-type": "addgene-full", "addgene_id": "81517", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -34348,7 +43247,6 @@ "plasmid_name": "pCM1.59", "sequence-type": "depositor-full", "addgene_id": "19593", - "references": [], "kit": null, "file": "data/addgene_plasmids/19593.depositor-full.gb" }, @@ -34357,7 +43255,10 @@ "plasmid_name": "pGP8A-ccdB", "sequence-type": "depositor-full", "addgene_id": "83883", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1324147111", + "https://www.ncbi.nlm.nih.gov/pubmed/24979769" + ], "kit": null, "file": "data/addgene_plasmids/83883.depositor-full.gb" }, @@ -34366,7 +43267,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS1C", "sequence-type": "depositor-full", "addgene_id": "20240", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20240.depositor-full.gb" }, @@ -34375,7 +43279,10 @@ "plasmid_name": "TFORF3421", "sequence-type": "addgene-full", "addgene_id": "144897", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144897.addgene-full.gb" }, @@ -34384,7 +43291,10 @@ "plasmid_name": "actc1b-mKate2-rab1ba", "sequence-type": "addgene-full", "addgene_id": "109607", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109607.addgene-full.gb" }, @@ -34393,7 +43303,10 @@ "plasmid_name": "TFORF3247", "sequence-type": "addgene-full", "addgene_id": "144723", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144723.addgene-full.gb" }, @@ -34402,7 +43315,10 @@ "plasmid_name": "pLX304-GW-DCK*-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176291", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "file": "data/addgene_plasmids/176291.addgene-full.gb" }, @@ -34411,7 +43327,10 @@ "plasmid_name": "pDRAV-3", "sequence-type": "depositor-full", "addgene_id": "26748", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1521", + "https://www.ncbi.nlm.nih.gov/pubmed/20953177" + ], "kit": null, "file": "data/addgene_plasmids/26748.depositor-full.gb" }, @@ -34420,7 +43339,9 @@ "plasmid_name": "pPB-cT3G-cERP2-3xFLAG-SMAD9-active", "sequence-type": "addgene-full", "addgene_id": "222580", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222580.addgene-full.gb" }, @@ -34429,7 +43350,10 @@ "plasmid_name": "pSLIK_hygro_BirA_NRF2", "sequence-type": "addgene-full", "addgene_id": "136539", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136539.addgene-full.gb" }, @@ -34438,7 +43362,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp9", "sequence-type": "addgene-full", "addgene_id": "168918", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168918.addgene-full.gb" }, @@ -34447,7 +43374,10 @@ "plasmid_name": "pAFMW-Gwpep(Mm)-Nbr[C399-625]", "sequence-type": "addgene-full", "addgene_id": "188591", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188591.addgene-full.gb" }, @@ -34456,7 +43386,10 @@ "plasmid_name": "pSAM2_mCherry_Irx4", "sequence-type": "addgene-full", "addgene_id": "72692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72692.addgene-full.gb" }, @@ -34465,7 +43398,9 @@ "plasmid_name": "pDONR221-MAVS(v2)", "sequence-type": "addgene-full", "addgene_id": "166189", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166189.addgene-full.gb" }, @@ -34474,7 +43409,10 @@ "plasmid_name": "pMuLE ENTR SV40 PuroR L3-L2", "sequence-type": "depositor-full", "addgene_id": "62164", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62164.depositor-full.gb" }, @@ -34483,7 +43421,6 @@ "plasmid_name": "R777-E149 Hs.PAK2", "sequence-type": "depositor-full", "addgene_id": "70433", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -34495,7 +43432,10 @@ "plasmid_name": "LC901: pMVP (L3-L2) mCherry + WPRE", "sequence-type": "addgene-full", "addgene_id": "121773", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121773.addgene-full.gb" }, @@ -34504,7 +43444,10 @@ "plasmid_name": "pENTR-Sensor_P2A_SLC2A4", "sequence-type": "addgene-full", "addgene_id": "221429", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221429.addgene-full.gb" }, @@ -34513,7 +43456,10 @@ "plasmid_name": "pAG306GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14380", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -34525,7 +43471,10 @@ "plasmid_name": "pDONR221-SLC15A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161040", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161040.addgene-full.gb" }, @@ -34534,7 +43483,10 @@ "plasmid_name": "pDONR223_RBM34_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82998", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82998.addgene-full.gb" }, @@ -34543,7 +43495,10 @@ "plasmid_name": "LIIIalpha R E-F", "sequence-type": "depositor-full", "addgene_id": "54387", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54387.depositor-full.gb" }, @@ -34552,7 +43507,10 @@ "plasmid_name": "pEarleyGate 100RMOA mPing", "sequence-type": "addgene-full", "addgene_id": "196137", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000793", + "https://www.ncbi.nlm.nih.gov/pubmed/37273575" + ], "kit": null, "file": "data/addgene_plasmids/196137.addgene-full.gb" }, @@ -34561,7 +43519,10 @@ "plasmid_name": "pDONR223_GATA3_p.S118F", "sequence-type": "addgene-full", "addgene_id": "81465", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -34573,7 +43534,10 @@ "plasmid_name": "TFORF3175", "sequence-type": "addgene-full", "addgene_id": "144651", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144651.addgene-full.gb" }, @@ -34582,7 +43546,10 @@ "plasmid_name": "LOC5570372 NPFF receptor", "sequence-type": "addgene-full", "addgene_id": "115378", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115378.addgene-full.gb" }, @@ -34591,7 +43558,10 @@ "plasmid_name": "pHAGE-BRAF-A598_T599insP", "sequence-type": "addgene-full", "addgene_id": "116131", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116131.addgene-full.gb" }, @@ -34600,7 +43570,10 @@ "plasmid_name": "pMOS018E: Entry vector for: ratiometric pHluorin (mitchondrial)", "sequence-type": "addgene-full", "addgene_id": "163070", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163070.addgene-full.gb" }, @@ -34609,7 +43582,10 @@ "plasmid_name": "908G", "sequence-type": "addgene-full", "addgene_id": "160239", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160239.addgene-full.gb" }, @@ -34618,7 +43594,10 @@ "plasmid_name": "pDEST17-UbE2A", "sequence-type": "addgene-full", "addgene_id": "15780", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "file": "data/addgene_plasmids/15780.addgene-full.gb" }, @@ -34627,7 +43606,10 @@ "plasmid_name": "pUBQ10:LLFLS2-2", "sequence-type": "addgene-full", "addgene_id": "202188", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "file": "data/addgene_plasmids/202188.addgene-full.gb" }, @@ -34648,7 +43630,10 @@ "plasmid_name": "pDONR223_REG1A_WT", "sequence-type": "addgene-full", "addgene_id": "81785", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -34660,7 +43645,6 @@ "plasmid_name": "Hs.KRAS4b K147L", "sequence-type": "depositor-full", "addgene_id": "83154", - "references": [], "kit": null, "file": "data/addgene_plasmids/83154.depositor-full.gb" }, @@ -34669,7 +43653,10 @@ "plasmid_name": "pFL-EGFP-3xFlag-HLTF", "sequence-type": "addgene-full", "addgene_id": "193055", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111749", + "https://www.ncbi.nlm.nih.gov/pubmed/36476850" + ], "kit": null, "file": "data/addgene_plasmids/193055.addgene-full.gb" }, @@ -34678,7 +43665,10 @@ "plasmid_name": "pAWH", "sequence-type": "addgene-full", "addgene_id": "133894", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/133894.addgene-full.gb" }, @@ -34687,7 +43677,10 @@ "plasmid_name": "pDONR223_ZDHHC4_WT", "sequence-type": "addgene-full", "addgene_id": "81831", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -34699,7 +43692,10 @@ "plasmid_name": "pDONR221_SLC25A39", "sequence-type": "addgene-full", "addgene_id": "131970", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131970.addgene-full.gb" }, @@ -34708,7 +43704,10 @@ "plasmid_name": "TFORF3309", "sequence-type": "addgene-full", "addgene_id": "144785", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144785.addgene-full.gb" }, @@ -34717,7 +43716,10 @@ "plasmid_name": "TFORF3355", "sequence-type": "addgene-full", "addgene_id": "144831", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144831.addgene-full.gb" }, @@ -34726,7 +43728,10 @@ "plasmid_name": "pHAGE-EGFR-S768T", "sequence-type": "addgene-full", "addgene_id": "116305", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116305.addgene-full.gb" }, @@ -34735,7 +43740,10 @@ "plasmid_name": "pDONR221-SLC25A29_STOP", "sequence-type": "addgene-full", "addgene_id": "161194", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161194.addgene-full.gb" }, @@ -34744,7 +43752,6 @@ "plasmid_name": "pSCM167-Flag-hSFRP1(aa53-169)", "sequence-type": "addgene-full", "addgene_id": "189547", - "references": [], "kit": null, "file": "data/addgene_plasmids/189547.addgene-full.gb" }, @@ -34753,7 +43760,9 @@ "plasmid_name": "pUB-cSypHer", "sequence-type": "addgene-full", "addgene_id": "84733", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "file": "data/addgene_plasmids/84733.addgene-full.gb" }, @@ -34762,7 +43771,10 @@ "plasmid_name": "pEBTet-SNAP-FOP", "sequence-type": "addgene-full", "addgene_id": "136796", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136796.addgene-full.gb" }, @@ -34771,7 +43783,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep70", "sequence-type": "addgene-full", "addgene_id": "136822", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136822.addgene-full.gb" }, @@ -34780,7 +43795,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12D", "sequence-type": "addgene-full", "addgene_id": "81651", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -34792,7 +43810,6 @@ "plasmid_name": "p667-UBC-CLK4-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189913", - "references": [], "kit": null, "file": "data/addgene_plasmids/189913.addgene-full.gb" }, @@ -34801,7 +43818,10 @@ "plasmid_name": "pDONR221-SLC35G5_STOP", "sequence-type": "addgene-full", "addgene_id": "161274", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161274.addgene-full.gb" }, @@ -34810,7 +43830,10 @@ "plasmid_name": "Ad-MKP-3 153-381", "sequence-type": "addgene-full", "addgene_id": "131524", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "file": "data/addgene_plasmids/131524.addgene-full.gb" }, @@ -34819,7 +43842,10 @@ "plasmid_name": "pHAGE- TRE-DEST-CBioTAP", "sequence-type": "depositor-full", "addgene_id": "53569", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1400648111", + "https://www.ncbi.nlm.nih.gov/pubmed/24550272" + ], "kit": null, "file": "data/addgene_plasmids/53569.depositor-full.gb" }, @@ -34828,7 +43854,10 @@ "plasmid_name": "pME-myristo", "sequence-type": "addgene-full", "addgene_id": "109541", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109541.addgene-full.gb" }, @@ -34837,7 +43866,10 @@ "plasmid_name": "pENT-L1-Kozak-Venus-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186360", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186360.addgene-full.gb" }, @@ -34846,7 +43878,10 @@ "plasmid_name": "pGWT35S-Cerulean-SKL", "sequence-type": "addgene-full", "addgene_id": "194048", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "file": "data/addgene_plasmids/194048.addgene-full.gb" }, @@ -34855,7 +43890,10 @@ "plasmid_name": "MAC_N_COMMD8", "sequence-type": "addgene-full", "addgene_id": "209680", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209680.addgene-full.gb" }, @@ -34864,7 +43902,6 @@ "plasmid_name": "V5-K202R-long-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192083", - "references": [], "kit": null, "file": "data/addgene_plasmids/192083.addgene-full.gb" }, @@ -34873,7 +43910,10 @@ "plasmid_name": "pENTR4-myc-nuc (w556-1)", "sequence-type": "addgene-full", "addgene_id": "20026", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/20026.addgene-full.gb" }, @@ -34882,7 +43922,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP7", "sequence-type": "addgene-full", "addgene_id": "154406", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154406.addgene-full.gb" }, @@ -34891,7 +43934,6 @@ "plasmid_name": "pUNos_C1", "sequence-type": "addgene-full", "addgene_id": "33297", - "references": [], "kit": null, "file": "data/addgene_plasmids/33297.addgene-full.gb" }, @@ -34900,7 +43942,9 @@ "plasmid_name": "pKC-4.04", "sequence-type": "addgene-full", "addgene_id": "112085", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29528287" + ], "kit": null, "file": "data/addgene_plasmids/112085.addgene-full.gb" }, @@ -34909,7 +43953,10 @@ "plasmid_name": "pDONR223_STK11_p.G242W", "sequence-type": "addgene-full", "addgene_id": "82763", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82763.addgene-full.gb" }, @@ -34918,7 +43965,10 @@ "plasmid_name": "pGP8GF-ccdB", "sequence-type": "addgene-full", "addgene_id": "188445", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188445.addgene-full.gb" }, @@ -34927,7 +43977,10 @@ "plasmid_name": "pLX304_zeo_eGFP_V5", "sequence-type": "addgene-full", "addgene_id": "160096", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160096.addgene-full.gb" }, @@ -34936,7 +43989,10 @@ "plasmid_name": "pAG303GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14133", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -34948,7 +44004,10 @@ "plasmid_name": "pDONR P2R-P3-EYFP", "sequence-type": "depositor-full", "addgene_id": "48351", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -34960,7 +44019,10 @@ "plasmid_name": "pSelAct-Express", "sequence-type": "addgene-full", "addgene_id": "174375", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-07-21-0171-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/34890250" + ], "kit": null, "file": "data/addgene_plasmids/174375.addgene-full.gb" }, @@ -34969,7 +44031,10 @@ "plasmid_name": "pJAK1.A", "sequence-type": "depositor-full", "addgene_id": "29460", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2009.07.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19647016" + ], "kit": null, "file": "data/addgene_plasmids/29460.depositor-full.gb" }, @@ -34978,7 +44043,10 @@ "plasmid_name": "pHAGE-MAP2K1-K57N", "sequence-type": "addgene-full", "addgene_id": "116427", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116427.addgene-full.gb" }, @@ -34987,7 +44055,6 @@ "plasmid_name": "pAG426GAL-LV_3CL", "sequence-type": "addgene-full", "addgene_id": "203507", - "references": [], "kit": null, "file": "data/addgene_plasmids/203507.addgene-full.gb" }, @@ -34996,7 +44063,10 @@ "plasmid_name": "pDONR223_TRAT1_p.D40Y", "sequence-type": "addgene-full", "addgene_id": "81293", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -35008,7 +44078,6 @@ "plasmid_name": "p416 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58543", - "references": [], "kit": null, "file": "data/addgene_plasmids/58543.depositor-full.gb" }, @@ -35017,7 +44086,10 @@ "plasmid_name": "pDL15", "sequence-type": "addgene-full", "addgene_id": "175901", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175901.addgene-full.gb" }, @@ -35026,7 +44098,10 @@ "plasmid_name": "MAC_N_TBA1A", "sequence-type": "addgene-full", "addgene_id": "111695", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111695.addgene-full.gb" }, @@ -35035,7 +44110,6 @@ "plasmid_name": "pENTR-Hu_TTK1(WT)", "sequence-type": "addgene-full", "addgene_id": "136354", - "references": [], "kit": null, "file": "data/addgene_plasmids/136354.addgene-full.gb" }, @@ -35044,7 +44118,10 @@ "plasmid_name": "W118-1_hTGM2_C277S-Flag", "sequence-type": "addgene-full", "addgene_id": "180412", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180412.addgene-full.gb" }, @@ -35053,7 +44130,10 @@ "plasmid_name": "pTol2pA2-mnx1:MLS-KillerRed", "sequence-type": "addgene-full", "addgene_id": "115515", - "references": [], + "references": [ + "https://doi.org/10.1016/j.redox.2018.08.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30193184" + ], "kit": null, "file": "data/addgene_plasmids/115515.addgene-full.gb" }, @@ -35062,7 +44142,10 @@ "plasmid_name": "pUAS-PE2-attB", "sequence-type": "addgene-full", "addgene_id": "149550", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2021996118", + "https://www.ncbi.nlm.nih.gov/pubmed/33443210" + ], "kit": null, "file": "data/addgene_plasmids/149550.addgene-full.gb" }, @@ -35071,7 +44154,10 @@ "plasmid_name": "pLentiCMV Puro DEST ERKKTRClover", "sequence-type": "addgene-full", "addgene_id": "59150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59150.addgene-full.gb" }, @@ -35080,7 +44166,10 @@ "plasmid_name": "pDONR221 Spinophilin", "sequence-type": "addgene-full", "addgene_id": "87123", - "references": [], + "references": [ + "https://doi.org/10.1155/2017/4153076", + "https://www.ncbi.nlm.nih.gov/pubmed/28634551" + ], "kit": null, "file": "data/addgene_plasmids/87123.addgene-full.gb" }, @@ -35089,7 +44178,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK13_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135266", - "references": [], "kit": null, "file": "data/addgene_plasmids/135266.addgene-full.gb" }, @@ -35098,7 +44186,10 @@ "plasmid_name": "CanlonicSF", "sequence-type": "addgene-full", "addgene_id": "178342", - "references": [], + "references": [ + "https://doi.org/10.1021/acssensors.2c00731", + "https://www.ncbi.nlm.nih.gov/pubmed/36306435" + ], "kit": null, "file": "data/addgene_plasmids/178342.addgene-full.gb" }, @@ -35107,7 +44198,10 @@ "plasmid_name": "pDEST-HemmarR2", "sequence-type": "addgene-full", "addgene_id": "112813", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301736", + "https://www.ncbi.nlm.nih.gov/pubmed/30504366" + ], "kit": null, "file": "data/addgene_plasmids/112813.addgene-full.gb" }, @@ -35116,7 +44210,9 @@ "plasmid_name": "pMpGWB400", "sequence-type": "depositor-full", "addgene_id": "68665", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68665.depositor-full.gb" }, @@ -35125,7 +44221,10 @@ "plasmid_name": "pCAG/ATP8B2(E171Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209242", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209242.addgene-full.gb" }, @@ -35134,7 +44233,10 @@ "plasmid_name": "pTW098", "sequence-type": "addgene-full", "addgene_id": "115941", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115941.addgene-full.gb" }, @@ -35143,7 +44245,10 @@ "plasmid_name": "pSC20", "sequence-type": "addgene-full", "addgene_id": "104794", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104794.addgene-full.gb" }, @@ -35152,7 +44257,10 @@ "plasmid_name": "pAG425GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14202", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -35164,7 +44272,10 @@ "plasmid_name": "pDONR223_RB1_WT", "sequence-type": "addgene-full", "addgene_id": "82275", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82275.addgene-full.gb" }, @@ -35173,7 +44284,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDKL5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170578", - "references": [], "kit": null, "file": "data/addgene_plasmids/170578.addgene-full.gb" }, @@ -35182,7 +44292,10 @@ "plasmid_name": "pDONR221-SLC25A17_STOP", "sequence-type": "depositor-full", "addgene_id": "161157", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161157.depositor-full.gb" }, @@ -35191,7 +44304,10 @@ "plasmid_name": "pDONR221-OCA2_STOP", "sequence-type": "addgene-full", "addgene_id": "161419", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161419.addgene-full.gb" }, @@ -35200,7 +44316,10 @@ "plasmid_name": "pDONR221_SLC34A1", "sequence-type": "addgene-full", "addgene_id": "132100", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132100.addgene-full.gb" }, @@ -35209,7 +44328,10 @@ "plasmid_name": "CHMP2A_GFP_N_term", "sequence-type": "addgene-full", "addgene_id": "31805", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1201847", + "https://www.ncbi.nlm.nih.gov/pubmed/21310966" + ], "kit": null, "file": "data/addgene_plasmids/31805.addgene-full.gb" }, @@ -35218,7 +44340,10 @@ "plasmid_name": "pHAGE-STK19-D89N", "sequence-type": "addgene-full", "addgene_id": "116688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116688.addgene-full.gb" }, @@ -35227,7 +44352,10 @@ "plasmid_name": "pWS509", "sequence-type": "addgene-full", "addgene_id": "123061", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123061.addgene-full.gb" }, @@ -35236,7 +44364,10 @@ "plasmid_name": "pDestTol2pA ins:R198P mVenus", "sequence-type": "addgene-full", "addgene_id": "210519", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adi8317", + "https://www.ncbi.nlm.nih.gov/pubmed/37792934" + ], "kit": null, "file": "data/addgene_plasmids/210519.addgene-full.gb" }, @@ -35245,7 +44376,6 @@ "plasmid_name": "pAG426-GAL-Alpha-synuclein-H50Q", "sequence-type": "addgene-full", "addgene_id": "181724", - "references": [], "kit": null, "file": "data/addgene_plasmids/181724.addgene-full.gb" }, @@ -35254,7 +44384,10 @@ "plasmid_name": "tetO-NR2F1", "sequence-type": "addgene-full", "addgene_id": "170698", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170698.addgene-full.gb" }, @@ -35263,7 +44396,10 @@ "plasmid_name": "pAG414GPD-CsCYP722C(pYL877)", "sequence-type": "addgene-full", "addgene_id": "178296", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178296.addgene-full.gb" }, @@ -35272,7 +44408,10 @@ "plasmid_name": "pDONR223_BMPR1B_WT", "sequence-type": "addgene-full", "addgene_id": "82195", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82195.addgene-full.gb" }, @@ -35281,7 +44420,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PRKACG_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170603", - "references": [], "kit": null, "file": "data/addgene_plasmids/170603.addgene-full.gb" }, @@ -35290,7 +44428,10 @@ "plasmid_name": "pTRANS-Pho2-1/2-2-tRNA", "sequence-type": "addgene-full", "addgene_id": "161762", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac096", + "https://www.ncbi.nlm.nih.gov/pubmed/35471600" + ], "kit": null, "file": "data/addgene_plasmids/161762.addgene-full.gb" }, @@ -35299,7 +44440,10 @@ "plasmid_name": "pDONR223_GPR141_p.E267K", "sequence-type": "addgene-full", "addgene_id": "81347", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -35311,7 +44455,10 @@ "plasmid_name": "pCR8/GW/TOPO-ELK1Y158A", "sequence-type": "addgene-full", "addgene_id": "98628", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98628.addgene-full.gb" }, @@ -35320,7 +44467,10 @@ "plasmid_name": "pUC-DTA-DEST-R3R4(R)", "sequence-type": "addgene-full", "addgene_id": "141011", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141011.addgene-full.gb" }, @@ -35329,7 +44479,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-LATS2", "sequence-type": "addgene-full", "addgene_id": "172987", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172987.addgene-full.gb" }, @@ -35338,7 +44491,10 @@ "plasmid_name": "pHAGE-PTCH1-R1308Kfs*64", "sequence-type": "addgene-full", "addgene_id": "116613", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116613.addgene-full.gb" }, @@ -35347,7 +44503,10 @@ "plasmid_name": "pcDNA5FRT/TO-SVIP-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113491", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113491.addgene-full.gb" }, @@ -35356,7 +44515,6 @@ "plasmid_name": "pcDNA-DDX53-GFP", "sequence-type": "addgene-full", "addgene_id": "222239", - "references": [], "kit": null, "file": "data/addgene_plasmids/222239.addgene-full.gb" }, @@ -35365,7 +44523,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-TAX1BP1", "sequence-type": "addgene-full", "addgene_id": "175761", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175761.addgene-full.gb" }, @@ -35374,7 +44535,10 @@ "plasmid_name": "pENTR223-BBRF3", "sequence-type": "addgene-full", "addgene_id": "195808", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195808.addgene-full.gb" }, @@ -35383,7 +44547,10 @@ "plasmid_name": "PE_25: Pxyl_tet_eG::sfYFP", "sequence-type": "addgene-full", "addgene_id": "104886", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104886.addgene-full.gb" }, @@ -35392,7 +44559,10 @@ "plasmid_name": "p5E-QUAS (L4-R1)", "sequence-type": "depositor-full", "addgene_id": "61374", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2013.06.012", + "https://www.ncbi.nlm.nih.gov/pubmed/23792917" + ], "kit": null, "file": "data/addgene_plasmids/61374.depositor-full.gb" }, @@ -35401,7 +44571,10 @@ "plasmid_name": "pDONR221-HOXB9", "sequence-type": "depositor-full", "addgene_id": "101398", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101398.depositor-full.gb" }, @@ -35410,7 +44583,10 @@ "plasmid_name": "pcDNA5-FRT/TO-N-mEGFP-PARP7", "sequence-type": "addgene-full", "addgene_id": "178004", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "file": "data/addgene_plasmids/178004.addgene-full.gb" }, @@ -35419,7 +44595,6 @@ "plasmid_name": "Hs.KRAS4b G12V", "sequence-type": "depositor-full", "addgene_id": "83132", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -35431,7 +44606,10 @@ "plasmid_name": "pDONR223_MET_WT", "sequence-type": "addgene-full", "addgene_id": "82307", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82307.addgene-full.gb" }, @@ -35440,7 +44618,10 @@ "plasmid_name": "C122-E16: CyPet", "sequence-type": "addgene-full", "addgene_id": "162896", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -35452,7 +44633,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-GABARAPL2-GFP", "sequence-type": "addgene-full", "addgene_id": "123113", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123113.addgene-full.gb" }, @@ -35461,7 +44645,10 @@ "plasmid_name": "pDONR221_SLC36A2", "sequence-type": "addgene-full", "addgene_id": "132072", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132072.addgene-full.gb" }, @@ -35470,7 +44657,10 @@ "plasmid_name": "pHAGE-MEOX2", "sequence-type": "addgene-full", "addgene_id": "116761", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116761.addgene-full.gb" }, @@ -35479,7 +44669,10 @@ "plasmid_name": "pDONR223-ZNF331", "sequence-type": "addgene-full", "addgene_id": "88442", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88442.addgene-full.gb" }, @@ -35488,7 +44681,10 @@ "plasmid_name": "pCMU-TPr", "sequence-type": "depositor-full", "addgene_id": "61189", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61189.depositor-full.gb" }, @@ -35497,7 +44693,10 @@ "plasmid_name": "pMuLE ENTR H1 L5-L4", "sequence-type": "depositor-full", "addgene_id": "62102", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62102.depositor-full.gb" }, @@ -35506,7 +44705,9 @@ "plasmid_name": "pRRLHygro-pEF1a-p53ash-mKate2-splitmVenusC", "sequence-type": "depositor-full", "addgene_id": "69583", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "file": "data/addgene_plasmids/69583.depositor-full.gb" }, @@ -35515,7 +44716,10 @@ "plasmid_name": "pENTR-GFP-WT1 -KTS C terminal HA", "sequence-type": "addgene-full", "addgene_id": "217642", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "file": "data/addgene_plasmids/217642.addgene-full.gb" }, @@ -35524,7 +44728,6 @@ "plasmid_name": "R777-E171 Hs.PIK3R1", "sequence-type": "depositor-full", "addgene_id": "70455", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -35536,7 +44739,10 @@ "plasmid_name": "p3Eegfp", "sequence-type": "depositor-full", "addgene_id": "22462", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/22462.depositor-full.gb" }, @@ -35545,7 +44751,10 @@ "plasmid_name": "pHAGE-PIK3CA-E542V", "sequence-type": "addgene-full", "addgene_id": "116481", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116481.addgene-full.gb" }, @@ -35554,7 +44763,10 @@ "plasmid_name": "pDONR221_SLC13A3", "sequence-type": "addgene-full", "addgene_id": "132309", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132309.addgene-full.gb" }, @@ -35563,7 +44775,10 @@ "plasmid_name": "PE_4: Prhl_lac_bD", "sequence-type": "addgene-full", "addgene_id": "113603", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113603.addgene-full.gb" }, @@ -35572,7 +44787,10 @@ "plasmid_name": "pBullet-er-c", "sequence-type": "depositor-full", "addgene_id": "53068", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53068.depositor-full.gb" }, @@ -35581,7 +44799,10 @@ "plasmid_name": "pDONR221-UCP3_STOP", "sequence-type": "addgene-full", "addgene_id": "161424", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161424.addgene-full.gb" }, @@ -35590,7 +44811,10 @@ "plasmid_name": "pDONR223_IKBKE_WT", "sequence-type": "addgene-full", "addgene_id": "82248", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82248.addgene-full.gb" }, @@ -35611,7 +44835,10 @@ "plasmid_name": "pT2-cryR;dll4P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90160", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90160.addgene-full.gb" }, @@ -35620,7 +44847,10 @@ "plasmid_name": "pCZGY3195", "sequence-type": "addgene-full", "addgene_id": "172695", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26376", + "https://www.ncbi.nlm.nih.gov/pubmed/28767038" + ], "kit": null, "file": "data/addgene_plasmids/172695.addgene-full.gb" }, @@ -35629,7 +44859,10 @@ "plasmid_name": "pMXs-ms-Sox3", "sequence-type": "depositor-full", "addgene_id": "50779", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "file": "data/addgene_plasmids/50779.depositor-full.gb" }, @@ -35638,7 +44871,10 @@ "plasmid_name": "pJW4.12", "sequence-type": "addgene-full", "addgene_id": "131374", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/131374.addgene-full.gb" }, @@ -35647,7 +44883,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS-Gln93,Ala271 hygro", "sequence-type": "addgene-full", "addgene_id": "158638", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158638.addgene-full.gb" }, @@ -35656,7 +44895,10 @@ "plasmid_name": "pHAGE-PIK3CB-E554K", "sequence-type": "addgene-full", "addgene_id": "116555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116555.addgene-full.gb" }, @@ -35665,7 +44907,10 @@ "plasmid_name": "pDONR223-PIP5K2A", "sequence-type": "addgene-full", "addgene_id": "23744", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -35677,7 +44922,10 @@ "plasmid_name": "Tol2-LyzC-Utrophin-GFP-U6ac-ctrl guides", "sequence-type": "addgene-full", "addgene_id": "168253", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "file": "data/addgene_plasmids/168253.addgene-full.gb" }, @@ -35686,7 +44934,10 @@ "plasmid_name": "pMuLE Lenti Dest eGFP", "sequence-type": "addgene-full", "addgene_id": "62175", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62175.addgene-full.gb" }, @@ -35695,7 +44946,10 @@ "plasmid_name": "pBABEpuro-ERBB2 A775_G776insYVMA", "sequence-type": "addgene-full", "addgene_id": "40982", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1203201109", + "https://www.ncbi.nlm.nih.gov/pubmed/22908275" + ], "kit": null, "file": "data/addgene_plasmids/40982.addgene-full.gb" }, @@ -35704,7 +44958,6 @@ "plasmid_name": "pAG416-GAL-TDP-43-Q331K", "sequence-type": "addgene-full", "addgene_id": "181719", - "references": [], "kit": null, "file": "data/addgene_plasmids/181719.addgene-full.gb" }, @@ -35713,7 +44966,10 @@ "plasmid_name": "pMDJ23 - pEXP[Psmu-2 | eFlp recombinase (PATCs) | gpd-2 tagRFP-T smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159815", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159815.addgene-full.gb" }, @@ -35722,7 +44978,6 @@ "plasmid_name": "pAG416GAL10-WNV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203475", - "references": [], "kit": null, "file": "data/addgene_plasmids/203475.addgene-full.gb" }, @@ -35731,7 +44986,10 @@ "plasmid_name": "MAC_N_IRF3", "sequence-type": "addgene-full", "addgene_id": "187749", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187749.addgene-full.gb" }, @@ -35740,7 +44998,10 @@ "plasmid_name": "MAC_N_SOX2", "sequence-type": "addgene-full", "addgene_id": "167794", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167794.addgene-full.gb" }, @@ -35749,7 +45010,10 @@ "plasmid_name": "pDONR223_IDH1_WT", "sequence-type": "addgene-full", "addgene_id": "82133", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82133.addgene-full.gb" }, @@ -35758,7 +45022,10 @@ "plasmid_name": "pENTR-2B-Gata4", "sequence-type": "addgene-full", "addgene_id": "98615", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98615.addgene-full.gb" }, @@ -35767,7 +45034,10 @@ "plasmid_name": "pGM48DEST", "sequence-type": "depositor-full", "addgene_id": "74757", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301705", + "https://www.ncbi.nlm.nih.gov/pubmed/30504365" + ], "kit": null, "file": "data/addgene_plasmids/74757.depositor-full.gb" }, @@ -35776,7 +45046,6 @@ "plasmid_name": "R777-E097 Hs.FOS", "sequence-type": "depositor-full", "addgene_id": "70381", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -35788,7 +45057,6 @@ "plasmid_name": "g7t pDONR", "sequence-type": "addgene-full", "addgene_id": "117457", - "references": [], "kit": null, "file": "data/addgene_plasmids/117457.addgene-full.gb" }, @@ -35797,7 +45065,10 @@ "plasmid_name": "CRYZL1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176941", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176941.addgene-full.gb" }, @@ -35806,7 +45077,10 @@ "plasmid_name": "371 pTol2-fli1ep:MTDest", "sequence-type": "depositor-full", "addgene_id": "73490", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/73490.depositor-full.gb" }, @@ -35815,7 +45089,10 @@ "plasmid_name": "pAM-PAT-ProUBQ10 GW", "sequence-type": "addgene-full", "addgene_id": "79751", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms12202", + "https://www.ncbi.nlm.nih.gov/pubmed/27447739" + ], "kit": null, "file": "data/addgene_plasmids/79751.addgene-full.gb" }, @@ -35824,7 +45101,10 @@ "plasmid_name": "pDONR221_SLC9A4", "sequence-type": "addgene-full", "addgene_id": "132246", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132246.addgene-full.gb" }, @@ -35833,7 +45113,9 @@ "plasmid_name": "pDRFLIP32", "sequence-type": "depositor-full", "addgene_id": "65511", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65511.depositor-full.gb" }, @@ -35842,7 +45124,10 @@ "plasmid_name": "pSGE_889_Nhe2_EcR-to-Ets96B_RB", "sequence-type": "depositor-full", "addgene_id": "71183", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71183.depositor-full.gb" }, @@ -35851,7 +45136,10 @@ "plasmid_name": "pLCS109", "sequence-type": "addgene-full", "addgene_id": "209330", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209330.addgene-full.gb" }, @@ -35860,7 +45148,6 @@ "plasmid_name": "DDX3X - G123E in pENTR", "sequence-type": "addgene-full", "addgene_id": "216574", - "references": [], "kit": null, "file": "data/addgene_plasmids/216574.addgene-full.gb" }, @@ -35869,7 +45156,10 @@ "plasmid_name": "pENTR-HLA-A0201-His", "sequence-type": "addgene-full", "addgene_id": "108213", - "references": [], + "references": [ + "https://doi.org/10.4049/immunohorizons.1800029", + "https://www.ncbi.nlm.nih.gov/pubmed/31022685" + ], "kit": null, "file": "data/addgene_plasmids/108213.addgene-full.gb" }, @@ -35878,7 +45168,10 @@ "plasmid_name": "pENTR223-BALF4", "sequence-type": "addgene-full", "addgene_id": "195835", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195835.addgene-full.gb" }, @@ -35887,7 +45180,10 @@ "plasmid_name": "pENTR223-BKRF4", "sequence-type": "addgene-full", "addgene_id": "195781", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195781.addgene-full.gb" }, @@ -35896,7 +45192,10 @@ "plasmid_name": "C512-E11: attB5r-mTFP1-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162942", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -35908,7 +45207,10 @@ "plasmid_name": "pDONR221-SLC39A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161295", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161295.addgene-full.gb" }, @@ -35917,7 +45219,10 @@ "plasmid_name": "pDONR223_BTC_WT", "sequence-type": "addgene-full", "addgene_id": "81904", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -35929,7 +45234,10 @@ "plasmid_name": "APOE_pLX307", "sequence-type": "depositor-full", "addgene_id": "98317", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98317.depositor-full.gb" }, @@ -35938,7 +45246,10 @@ "plasmid_name": "MAC-SARS-CoV-2 M", "sequence-type": "addgene-full", "addgene_id": "158369", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158369.addgene-full.gb" }, @@ -35947,7 +45258,10 @@ "plasmid_name": "pENTR puroR R4-R3", "sequence-type": "depositor-full", "addgene_id": "43965", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "file": "data/addgene_plasmids/43965.depositor-full.gb" }, @@ -35956,7 +45270,10 @@ "plasmid_name": "pDONR221 Cas9-HMGB1", "sequence-type": "addgene-full", "addgene_id": "183198", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "file": "data/addgene_plasmids/183198.addgene-full.gb" }, @@ -35965,7 +45282,10 @@ "plasmid_name": "PB-CAG-4300-H2-G1397C", "sequence-type": "addgene-full", "addgene_id": "210395", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-023-05500-y", + "https://www.ncbi.nlm.nih.gov/pubmed/37923818" + ], "kit": null, "file": "data/addgene_plasmids/210395.addgene-full.gb" }, @@ -35974,7 +45294,10 @@ "plasmid_name": "TFORF3288", "sequence-type": "addgene-full", "addgene_id": "144764", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144764.addgene-full.gb" }, @@ -35983,7 +45306,10 @@ "plasmid_name": "375 pME-fli1a", "sequence-type": "depositor-full", "addgene_id": "49001", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49001.depositor-full.gb" }, @@ -35992,7 +45318,10 @@ "plasmid_name": "actc1b-mKate2-rab40b", "sequence-type": "addgene-full", "addgene_id": "109640", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109640.addgene-full.gb" }, @@ -36001,7 +45330,10 @@ "plasmid_name": "pT3-EF1aH-PIK3CA H1047R", "sequence-type": "addgene-full", "addgene_id": "180031", - "references": [], + "references": [ + "https://doi.org/10.1111/liv.13055", + "https://www.ncbi.nlm.nih.gov/pubmed/26716908" + ], "kit": null, "file": "data/addgene_plasmids/180031.addgene-full.gb" }, @@ -36010,7 +45342,10 @@ "plasmid_name": "pDONR221_SLC25A17", "sequence-type": "addgene-full", "addgene_id": "131991", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131991.addgene-full.gb" }, @@ -36019,7 +45354,10 @@ "plasmid_name": "pSLIK 3xFLAG-BCAS2 zeo", "sequence-type": "addgene-full", "addgene_id": "192319", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192319.addgene-full.gb" }, @@ -36028,7 +45366,10 @@ "plasmid_name": "FIP1L1", "sequence-type": "addgene-full", "addgene_id": "155605", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155605.addgene-full.gb" }, @@ -36037,7 +45378,10 @@ "plasmid_name": "pDONR221-SLC18A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161175", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161175.addgene-full.gb" }, @@ -36046,7 +45390,10 @@ "plasmid_name": "pDONR223_GALNT14_p.F285L", "sequence-type": "addgene-full", "addgene_id": "81550", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -36058,7 +45405,10 @@ "plasmid_name": "pDONR223_KEAP1_p.G417R", "sequence-type": "addgene-full", "addgene_id": "82836", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82836.addgene-full.gb" }, @@ -36067,7 +45417,10 @@ "plasmid_name": "pCK083 desmaMCS:minpromEGFP,exorh:mCherry", "sequence-type": "addgene-full", "addgene_id": "200016", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/200016.addgene-full.gb" }, @@ -36076,7 +45429,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep27", "sequence-type": "addgene-full", "addgene_id": "136858", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136858.addgene-full.gb" }, @@ -36085,7 +45441,10 @@ "plasmid_name": "pCellFree_G02", "sequence-type": "depositor-full", "addgene_id": "67136", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "file": "data/addgene_plasmids/67136.depositor-full.gb" }, @@ -36094,7 +45453,10 @@ "plasmid_name": "pT3-EF1aH N90-beta-catenin", "sequence-type": "addgene-full", "addgene_id": "86499", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0706578104", + "https://www.ncbi.nlm.nih.gov/pubmed/17785413" + ], "kit": null, "file": "data/addgene_plasmids/86499.addgene-full.gb" }, @@ -36103,7 +45465,10 @@ "plasmid_name": "ph2m", "sequence-type": "depositor-full", "addgene_id": "22518", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "file": "data/addgene_plasmids/22518.depositor-full.gb" }, @@ -36112,7 +45477,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-miRFP713-RfA", "sequence-type": "addgene-full", "addgene_id": "186381", - "references": [], "kit": null, "file": "data/addgene_plasmids/186381.addgene-full.gb" }, @@ -36121,7 +45485,10 @@ "plasmid_name": "JD690", "sequence-type": "addgene-full", "addgene_id": "160397", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0703-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33046875" + ], "kit": null, "file": "data/addgene_plasmids/160397.addgene-full.gb" }, @@ -36130,7 +45497,10 @@ "plasmid_name": "IGF1R_pLX307", "sequence-type": "addgene-full", "addgene_id": "98344", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98344.addgene-full.gb" }, @@ -36139,7 +45509,10 @@ "plasmid_name": "pENTR-D-kcnj1b", "sequence-type": "addgene-full", "addgene_id": "173126", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173126.addgene-full.gb" }, @@ -36148,7 +45521,10 @@ "plasmid_name": "pLX_TRC311 ETV5", "sequence-type": "depositor-full", "addgene_id": "74984", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/28178529" + ], "kit": null, "file": "data/addgene_plasmids/74984.depositor-full.gb" }, @@ -36157,7 +45533,9 @@ "plasmid_name": "pDONR221-DHTKD1", "sequence-type": "addgene-full", "addgene_id": "166168", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166168.addgene-full.gb" }, @@ -36166,7 +45544,10 @@ "plasmid_name": "pDONR223-ZNF488", "sequence-type": "addgene-full", "addgene_id": "88188", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88188.addgene-full.gb" }, @@ -36175,7 +45556,10 @@ "plasmid_name": "CHAF1B_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177009", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/177009.addgene-full.gb" }, @@ -36184,7 +45568,10 @@ "plasmid_name": "HRas (G12V, E37G)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64640", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/64640.addgene-full.gb" }, @@ -36193,7 +45580,10 @@ "plasmid_name": "IP803: pMAGIC (R4-R3) NLS-Sa dCas9-NLS-Dnmt3a3L", "sequence-type": "addgene-full", "addgene_id": "121826", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121826.addgene-full.gb" }, @@ -36202,7 +45592,10 @@ "plasmid_name": "pENTR223-BALF0/1", "sequence-type": "addgene-full", "addgene_id": "198588", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198588.addgene-full.gb" }, @@ -36211,7 +45604,10 @@ "plasmid_name": "pDONR221-MICU1-sh1-rORF", "sequence-type": "depositor-full", "addgene_id": "31764", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09358", + "https://www.ncbi.nlm.nih.gov/pubmed/20693986" + ], "kit": null, "file": "data/addgene_plasmids/31764.depositor-full.gb" }, @@ -36220,7 +45616,10 @@ "plasmid_name": "KN401: pMVP (L3-L2) FKBP DD + WPRE", "sequence-type": "addgene-full", "addgene_id": "121792", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121792.addgene-full.gb" }, @@ -36229,7 +45628,10 @@ "plasmid_name": "pDONR221-kcnk15", "sequence-type": "addgene-full", "addgene_id": "208998", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208998.addgene-full.gb" }, @@ -36238,7 +45640,10 @@ "plasmid_name": "pPB-MPP8-112\u2013858_Flag2-Blast", "sequence-type": "addgene-full", "addgene_id": "175039", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-23308-4", + "https://www.ncbi.nlm.nih.gov/pubmed/34031396" + ], "kit": null, "file": "data/addgene_plasmids/175039.addgene-full.gb" }, @@ -36247,7 +45652,9 @@ "plasmid_name": "pPB-cT3G-cERP2-NFYB", "sequence-type": "addgene-full", "addgene_id": "222561", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222561.addgene-full.gb" }, @@ -36256,7 +45663,10 @@ "plasmid_name": "pME-mTagBFP", "sequence-type": "depositor-full", "addgene_id": "75148", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -36268,7 +45678,10 @@ "plasmid_name": "pME-gata2a", "sequence-type": "addgene-full", "addgene_id": "132977", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132977.addgene-full.gb" }, @@ -36277,7 +45690,9 @@ "plasmid_name": "pDONR221-SNRPA1", "sequence-type": "addgene-full", "addgene_id": "166213", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166213.addgene-full.gb" }, @@ -36286,7 +45701,10 @@ "plasmid_name": "AAEL012385 MIP R", "sequence-type": "addgene-full", "addgene_id": "115399", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115399.addgene-full.gb" }, @@ -36295,7 +45713,10 @@ "plasmid_name": "pMH-SFB-RNF169", "sequence-type": "addgene-full", "addgene_id": "99392", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M112.373530", + "https://www.ncbi.nlm.nih.gov/pubmed/22733822" + ], "kit": null, "file": "data/addgene_plasmids/99392.addgene-full.gb" }, @@ -36304,7 +45725,10 @@ "plasmid_name": "pDD401", "sequence-type": "addgene-full", "addgene_id": "91828", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "file": "data/addgene_plasmids/91828.addgene-full.gb" }, @@ -36313,7 +45737,10 @@ "plasmid_name": "TFORF3074", "sequence-type": "addgene-full", "addgene_id": "144550", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144550.addgene-full.gb" }, @@ -36322,7 +45749,10 @@ "plasmid_name": "pDONR221-SLC49A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161334", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161334.depositor-full.gb" }, @@ -36331,7 +45761,10 @@ "plasmid_name": "pMMK ENTR 4 CMV eGFP", "sequence-type": "addgene-full", "addgene_id": "206272", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206272.addgene-full.gb" }, @@ -36352,7 +45785,10 @@ "plasmid_name": "pDONR223_AKT1_WT", "sequence-type": "addgene-full", "addgene_id": "81764", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -36364,7 +45800,10 @@ "plasmid_name": "pDONR221-SLC9A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161341", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161341.addgene-full.gb" }, @@ -36373,7 +45812,9 @@ "plasmid_name": "p3E-V5-mTagBFP2 (JDW 871)", "sequence-type": "addgene-full", "addgene_id": "224531", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224531.addgene-full.gb" }, @@ -36382,7 +45823,10 @@ "plasmid_name": "pDESTmycEIF2C1", "sequence-type": "depositor-full", "addgene_id": "19871", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19871.depositor-full.gb" }, @@ -36391,7 +45835,10 @@ "plasmid_name": "pDONR223_GTPBP8_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82979", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82979.addgene-full.gb" }, @@ -36400,7 +45847,10 @@ "plasmid_name": "pDONR223_SMAD4_p.K519N", "sequence-type": "addgene-full", "addgene_id": "81484", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -36412,7 +45862,10 @@ "plasmid_name": "pMetYC-Dest", "sequence-type": "addgene-full", "addgene_id": "105081", - "references": [], + "references": [ + "https://doi.org/10.1002/0471142301.ns0527s41", + "https://www.ncbi.nlm.nih.gov/pubmed/18428659" + ], "kit": null, "file": "data/addgene_plasmids/105081.addgene-full.gb" }, @@ -36421,7 +45874,10 @@ "plasmid_name": "KU801: pMVP (L5-L4) mCherry", "sequence-type": "addgene-full", "addgene_id": "121709", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121709.addgene-full.gb" }, @@ -36430,7 +45886,6 @@ "plasmid_name": "R777-E277 Hs.RHOA", "sequence-type": "depositor-full", "addgene_id": "70561", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -36442,7 +45897,10 @@ "plasmid_name": "pHAGE-EGFR-A289V", "sequence-type": "addgene-full", "addgene_id": "116230", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116230.addgene-full.gb" }, @@ -36451,7 +45909,10 @@ "plasmid_name": "pLVX-BirA-UBE3B-Puro", "sequence-type": "addgene-full", "addgene_id": "107351", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "file": "data/addgene_plasmids/107351.addgene-full.gb" }, @@ -36460,7 +45921,10 @@ "plasmid_name": "TFORF3428", "sequence-type": "addgene-full", "addgene_id": "144904", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144904.addgene-full.gb" }, @@ -36469,7 +45933,10 @@ "plasmid_name": "5'-3xFLAG Zmynd8-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212078", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212078.addgene-full.gb" }, @@ -36478,7 +45945,10 @@ "plasmid_name": "pCFJ351 - MCS(cxTi10882, IV)", "sequence-type": "depositor-full", "addgene_id": "34867", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34867.depositor-full.gb" }, @@ -36487,7 +45957,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP3", "sequence-type": "addgene-full", "addgene_id": "158354", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158354.addgene-full.gb" }, @@ -36496,7 +45969,10 @@ "plasmid_name": "pLD-puro-Cc-CR-PARK7H126A-VA", "sequence-type": "addgene-full", "addgene_id": "115190", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115190.addgene-full.gb" }, @@ -36505,7 +45981,10 @@ "plasmid_name": "TFORF3283", "sequence-type": "addgene-full", "addgene_id": "144759", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144759.addgene-full.gb" }, @@ -36514,7 +45993,6 @@ "plasmid_name": "R777-E352 Hs.TP53-nostop", "sequence-type": "depositor-full", "addgene_id": "70636", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -36526,7 +46004,10 @@ "plasmid_name": "pAG305GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14185", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -36538,7 +46019,10 @@ "plasmid_name": "pSLIK 3xFLAG-NUP37 zeo", "sequence-type": "addgene-full", "addgene_id": "192324", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192324.addgene-full.gb" }, @@ -36547,7 +46031,10 @@ "plasmid_name": "SUN2delSUN", "sequence-type": "addgene-full", "addgene_id": "130835", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130835.addgene-full.gb" }, @@ -36556,7 +46043,10 @@ "plasmid_name": "pDONR223_GPR137B_WT", "sequence-type": "addgene-full", "addgene_id": "82890", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82890.addgene-full.gb" }, @@ -36565,7 +46055,10 @@ "plasmid_name": "pDONR221-SLC25A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161148", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161148.addgene-full.gb" }, @@ -36574,7 +46067,10 @@ "plasmid_name": "pEBTetDBl-CLIP-CPAP", "sequence-type": "addgene-full", "addgene_id": "136865", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136865.addgene-full.gb" }, @@ -36583,7 +46079,6 @@ "plasmid_name": "MAPK9_BirA_Nterm", "sequence-type": "addgene-full", "addgene_id": "221521", - "references": [], "kit": null, "file": "data/addgene_plasmids/221521.addgene-full.gb" }, @@ -36592,7 +46087,10 @@ "plasmid_name": "pENTR1A-3xFlag-M694V-MEFV", "sequence-type": "addgene-full", "addgene_id": "167118", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-2449-4_12", + "https://www.ncbi.nlm.nih.gov/pubmed/35759198" + ], "kit": null, "file": "data/addgene_plasmids/167118.addgene-full.gb" }, @@ -36601,7 +46099,6 @@ "plasmid_name": "R777-E067 Hs.EXOC1", "sequence-type": "depositor-full", "addgene_id": "70351", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -36613,7 +46110,10 @@ "plasmid_name": "TFORF3400", "sequence-type": "addgene-full", "addgene_id": "144876", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144876.addgene-full.gb" }, @@ -36622,7 +46122,10 @@ "plasmid_name": "pSGE_646_S2-1-CACA_dCP", "sequence-type": "depositor-full", "addgene_id": "71153", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71153.depositor-full.gb" }, @@ -36631,7 +46134,10 @@ "plasmid_name": "pHAGE-ERBB2-M916I", "sequence-type": "addgene-full", "addgene_id": "116342", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116342.addgene-full.gb" }, @@ -36640,7 +46146,9 @@ "plasmid_name": "pLV-SFFVp-gI-BlastR", "sequence-type": "addgene-full", "addgene_id": "207179", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207179.addgene-full.gb" }, @@ -36649,7 +46157,10 @@ "plasmid_name": "pcDNA3_GCGR-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194374", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194374.addgene-full.gb" }, @@ -36658,7 +46169,10 @@ "plasmid_name": "pDONR221_SLC7A2", "sequence-type": "addgene-full", "addgene_id": "131937", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131937.addgene-full.gb" }, @@ -36667,7 +46181,10 @@ "plasmid_name": "pAFW-Ago2", "sequence-type": "depositor-full", "addgene_id": "50554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2010.05.015", + "https://www.ncbi.nlm.nih.gov/pubmed/20605501" + ], "kit": null, "file": "data/addgene_plasmids/50554.depositor-full.gb" }, @@ -36676,7 +46193,10 @@ "plasmid_name": "actc1b-GalT-mKate2", "sequence-type": "addgene-full", "addgene_id": "109506", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109506.addgene-full.gb" }, @@ -36685,7 +46205,10 @@ "plasmid_name": "TFORF2946", "sequence-type": "addgene-full", "addgene_id": "144422", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144422.addgene-full.gb" }, @@ -36694,7 +46217,10 @@ "plasmid_name": "pLenti PKAKTRn-Clover", "sequence-type": "addgene-full", "addgene_id": "177200", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2022.02.006", + "https://www.ncbi.nlm.nih.gov/pubmed/35316656" + ], "kit": null, "file": "data/addgene_plasmids/177200.addgene-full.gb" }, @@ -36703,7 +46229,10 @@ "plasmid_name": "pAG305GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14378", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -36715,7 +46244,10 @@ "plasmid_name": "pGWB518", "sequence-type": "depositor-full", "addgene_id": "74860", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74860.depositor-full.gb" }, @@ -36724,7 +46256,10 @@ "plasmid_name": "543-p3E-2A-mcherrypA", "sequence-type": "addgene-full", "addgene_id": "26031", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.084152", + "https://www.ncbi.nlm.nih.gov/pubmed/23462469" + ], "kit": null, "file": "data/addgene_plasmids/26031.addgene-full.gb" }, @@ -36733,7 +46268,10 @@ "plasmid_name": "Epac-S-H170", "sequence-type": "addgene-full", "addgene_id": "170352", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0122513", + "https://www.ncbi.nlm.nih.gov/pubmed/25875503" + ], "kit": null, "file": "data/addgene_plasmids/170352.addgene-full.gb" }, @@ -36742,7 +46280,10 @@ "plasmid_name": "p5E_GGWDest-", "sequence-type": "depositor-full", "addgene_id": "49318", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -36754,7 +46295,10 @@ "plasmid_name": "pDONR221-SLC2A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161233", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161233.addgene-full.gb" }, @@ -36763,7 +46307,10 @@ "plasmid_name": "pLEX305-N-dTAG-CARD8", "sequence-type": "addgene-full", "addgene_id": "169989", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169989.addgene-full.gb" }, @@ -36772,7 +46319,10 @@ "plasmid_name": "pDONR223_TMPO_p.D185H", "sequence-type": "addgene-full", "addgene_id": "81616", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -36784,7 +46334,9 @@ "plasmid_name": "pDONR221-ATP6V1B2", "sequence-type": "addgene-full", "addgene_id": "166155", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166155.addgene-full.gb" }, @@ -36793,7 +46345,10 @@ "plasmid_name": "LB001: pMAGIC (L3-L2) 3x HA epitope tag + polyA; hU6::Sp/xCas9 TRE#2 gRNA", "sequence-type": "addgene-full", "addgene_id": "131757", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/131757.addgene-full.gb" }, @@ -36802,7 +46357,10 @@ "plasmid_name": "pHAGE-EGFR-R521K", "sequence-type": "addgene-full", "addgene_id": "116296", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116296.addgene-full.gb" }, @@ -36811,7 +46369,10 @@ "plasmid_name": "pAC1819_pCR8-DR-SMN2-2-DR", "sequence-type": "addgene-full", "addgene_id": "118653", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118653.addgene-full.gb" }, @@ -36820,7 +46381,10 @@ "plasmid_name": "pThy1-Brainbow3.0", "sequence-type": "depositor-full", "addgene_id": "45177", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2450", + "https://www.ncbi.nlm.nih.gov/pubmed/23817127" + ], "kit": null, "file": "data/addgene_plasmids/45177.depositor-full.gb" }, @@ -36829,7 +46393,10 @@ "plasmid_name": "pCS2 LRP6-eGFP", "sequence-type": "addgene-full", "addgene_id": "180143", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-78019-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33299006" + ], "kit": null, "file": "data/addgene_plasmids/180143.addgene-full.gb" }, @@ -36838,7 +46405,10 @@ "plasmid_name": "pDEST-actc1b-mKate2-ccdb", "sequence-type": "addgene-full", "addgene_id": "109732", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109732.addgene-full.gb" }, @@ -36847,7 +46417,10 @@ "plasmid_name": "TFORF3140", "sequence-type": "addgene-full", "addgene_id": "144616", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144616.addgene-full.gb" }, @@ -36856,7 +46429,10 @@ "plasmid_name": "pcDNA3.2 TDP-43 5F-L YFP", "sequence-type": "addgene-full", "addgene_id": "84914", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09320", + "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + ], "kit": null, "file": "data/addgene_plasmids/84914.addgene-full.gb" }, @@ -36865,7 +46441,10 @@ "plasmid_name": "pDONR223_CNBD1_p.F343C", "sequence-type": "addgene-full", "addgene_id": "81422", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -36877,7 +46456,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-mir-92a", "sequence-type": "depositor-full", "addgene_id": "46666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46666.depositor-full.gb" }, @@ -36886,7 +46468,10 @@ "plasmid_name": "A1-LCD-20G+20S+7F-7Y", "sequence-type": "addgene-full", "addgene_id": "178688", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178688.addgene-full.gb" }, @@ -36895,7 +46480,10 @@ "plasmid_name": "pTol2CG NBT:NRGIIIa:polyA", "sequence-type": "addgene-full", "addgene_id": "193012", - "references": [], + "references": [ + "https://doi.org/10.1002/humu.24393", + "https://www.ncbi.nlm.nih.gov/pubmed/35485770" + ], "kit": null, "file": "data/addgene_plasmids/193012.addgene-full.gb" }, @@ -36904,7 +46492,10 @@ "plasmid_name": "pDONR223_GPR141_WT", "sequence-type": "addgene-full", "addgene_id": "81876", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -36916,7 +46507,10 @@ "plasmid_name": "p{ie1-DsRed::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182173", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182173.addgene-full.gb" }, @@ -36925,7 +46519,10 @@ "plasmid_name": "p7055 pHAGE-P-CMVt-N-HA-GAW-COPZ1", "sequence-type": "addgene-full", "addgene_id": "100145", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100145.addgene-full.gb" }, @@ -36934,7 +46531,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK31_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189880", - "references": [], "kit": null, "file": "data/addgene_plasmids/189880.addgene-full.gb" }, @@ -36943,7 +46539,10 @@ "plasmid_name": "pYPQ285 (Lb5Cas12a)", "sequence-type": "addgene-full", "addgene_id": "138120", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138120.addgene-full.gb" }, @@ -36952,7 +46551,10 @@ "plasmid_name": "pHAGE-BRAF-L584F", "sequence-type": "addgene-full", "addgene_id": "116176", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116176.addgene-full.gb" }, @@ -36961,7 +46563,10 @@ "plasmid_name": "pDONR223_HcRed", "sequence-type": "depositor-full", "addgene_id": "25892", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "file": "data/addgene_plasmids/25892.depositor-full.gb" }, @@ -36970,7 +46575,10 @@ "plasmid_name": "TFORF3527", "sequence-type": "depositor-full", "addgene_id": "145003", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145003.depositor-full.gb" }, @@ -36979,7 +46587,10 @@ "plasmid_name": "IO502: pMVP (R4-R3) eCFP", "sequence-type": "addgene-full", "addgene_id": "121734", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121734.addgene-full.gb" }, @@ -36988,7 +46599,6 @@ "plasmid_name": "R777-E201 Hs.PRKAG2", "sequence-type": "depositor-full", "addgene_id": "70485", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -37000,7 +46610,10 @@ "plasmid_name": "pAG414GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14336", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -37012,7 +46625,6 @@ "plasmid_name": "pGEX6P1-DEST-HA", "sequence-type": "addgene-full", "addgene_id": "119751", - "references": [], "kit": null, "file": "data/addgene_plasmids/119751.addgene-full.gb" }, @@ -37021,7 +46633,10 @@ "plasmid_name": "pGC244", "sequence-type": "depositor-full", "addgene_id": "19672", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19672.depositor-full.gb" }, @@ -37030,7 +46645,10 @@ "plasmid_name": "pDONR223_MAX_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82944", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82944.addgene-full.gb" }, @@ -37039,7 +46657,6 @@ "plasmid_name": "p663-UBC-V5-3xHA-miniTurbo-3XNLS-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158160", - "references": [], "kit": null, "file": "data/addgene_plasmids/158160.addgene-full.gb" }, @@ -37048,7 +46665,10 @@ "plasmid_name": "TFORF3463", "sequence-type": "addgene-full", "addgene_id": "144939", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144939.addgene-full.gb" }, @@ -37057,7 +46677,10 @@ "plasmid_name": "pENTR1A_mmFbxw7(res) (closed)", "sequence-type": "addgene-full", "addgene_id": "160105", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160105.addgene-full.gb" }, @@ -37066,7 +46689,9 @@ "plasmid_name": "p3E-H2A_mCherry_SV40pA (JDW 967)", "sequence-type": "addgene-full", "addgene_id": "224528", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224528.addgene-full.gb" }, @@ -37075,7 +46700,10 @@ "plasmid_name": "pDONR221-SLC4A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161358", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161358.addgene-full.gb" }, @@ -37084,7 +46712,10 @@ "plasmid_name": "pDONR221-ZNF470", "sequence-type": "depositor-full", "addgene_id": "101564", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101564.depositor-full.gb" }, @@ -37093,7 +46724,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-irf2bpl D", "sequence-type": "addgene-full", "addgene_id": "89373", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89373.addgene-full.gb" }, @@ -37114,7 +46748,10 @@ "plasmid_name": "TFORF3073", "sequence-type": "addgene-full", "addgene_id": "144549", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144549.addgene-full.gb" }, @@ -37123,7 +46760,10 @@ "plasmid_name": "BTG4", "sequence-type": "addgene-full", "addgene_id": "155428", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155428.addgene-full.gb" }, @@ -37132,7 +46772,10 @@ "plasmid_name": "pDD364", "sequence-type": "addgene-full", "addgene_id": "91831", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "file": "data/addgene_plasmids/91831.addgene-full.gb" }, @@ -37141,7 +46784,10 @@ "plasmid_name": "LOC5576189 CCHamide receptor", "sequence-type": "addgene-full", "addgene_id": "115380", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115380.addgene-full.gb" }, @@ -37150,7 +46796,10 @@ "plasmid_name": "pLVX-HA-UBE3B(C1036A)-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107348", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "file": "data/addgene_plasmids/107348.addgene-full.gb" }, @@ -37159,7 +46808,10 @@ "plasmid_name": "pHAGE-EGFR-A289T", "sequence-type": "addgene-full", "addgene_id": "116229", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116229.addgene-full.gb" }, @@ -37168,7 +46820,10 @@ "plasmid_name": "KP301: pMVP (L5-L4) mCherry-P2A", "sequence-type": "addgene-full", "addgene_id": "121710", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121710.addgene-full.gb" }, @@ -37177,7 +46832,10 @@ "plasmid_name": "pDONR223_ID2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82960", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82960.addgene-full.gb" }, @@ -37186,7 +46844,10 @@ "plasmid_name": "pDONR223_EDNRB_p.L349I", "sequence-type": "addgene-full", "addgene_id": "81406", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -37198,7 +46859,10 @@ "plasmid_name": "pEPYCdKN0022", "sequence-type": "addgene-full", "addgene_id": "196154", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196154.addgene-full.gb" }, @@ -37207,7 +46871,6 @@ "plasmid_name": "R777-E249 Hs.RASGRP4", "sequence-type": "depositor-full", "addgene_id": "70533", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -37219,7 +46882,10 @@ "plasmid_name": "DsRed2_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177010", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/177010.addgene-full.gb" }, @@ -37228,7 +46894,9 @@ "plasmid_name": "pDONR221-EHD1", "sequence-type": "addgene-full", "addgene_id": "166171", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166171.addgene-full.gb" }, @@ -37237,7 +46905,10 @@ "plasmid_name": "pAG304GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14280", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -37249,7 +46920,10 @@ "plasmid_name": "TFORF3156", "sequence-type": "addgene-full", "addgene_id": "144632", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144632.addgene-full.gb" }, @@ -37258,7 +46932,10 @@ "plasmid_name": "p3E-rab5aa", "sequence-type": "addgene-full", "addgene_id": "109716", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109716.addgene-full.gb" }, @@ -37267,7 +46944,10 @@ "plasmid_name": "pLenti6.3/TO/V5-DEST-IGFBP2", "sequence-type": "addgene-full", "addgene_id": "191006", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg1840", + "https://www.ncbi.nlm.nih.gov/pubmed/37436978" + ], "kit": null, "file": "data/addgene_plasmids/191006.addgene-full.gb" }, @@ -37276,7 +46956,10 @@ "plasmid_name": "pDEST 566-XERICO", "sequence-type": "addgene-full", "addgene_id": "118677", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118677.addgene-full.gb" }, @@ -37285,7 +46968,10 @@ "plasmid_name": "pHAGE-BRAF-G466V", "sequence-type": "addgene-full", "addgene_id": "116152", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116152.addgene-full.gb" }, @@ -37294,7 +46980,10 @@ "plasmid_name": "p7134 pHAGE-P-CMVt-N-HA-GAW-WDR92", "sequence-type": "addgene-full", "addgene_id": "100161", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100161.addgene-full.gb" }, @@ -37303,7 +46992,10 @@ "plasmid_name": "pDONR221-rap1-K462-463-651R", "sequence-type": "addgene-full", "addgene_id": "84564", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.185793.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25800674" + ], "kit": null, "file": "data/addgene_plasmids/84564.addgene-full.gb" }, @@ -37312,7 +47004,10 @@ "plasmid_name": "pDONR223_BAP1_WT", "sequence-type": "addgene-full", "addgene_id": "81852", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -37324,7 +47019,10 @@ "plasmid_name": "pDONR221-kcnk1a", "sequence-type": "addgene-full", "addgene_id": "208981", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208981.addgene-full.gb" }, @@ -37333,7 +47031,9 @@ "plasmid_name": "pPB-cT3G-cERP2-DPPA3", "sequence-type": "addgene-full", "addgene_id": "222578", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222578.addgene-full.gb" }, @@ -37342,7 +47042,10 @@ "plasmid_name": "pECNUS_MP01", "sequence-type": "addgene-full", "addgene_id": "194350", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkad142", + "https://www.ncbi.nlm.nih.gov/pubmed/36919598" + ], "kit": null, "file": "data/addgene_plasmids/194350.addgene-full.gb" }, @@ -37351,7 +47054,10 @@ "plasmid_name": "pME-H2B-mCerulean3-P2A-mKOFP2-CAAX", "sequence-type": "depositor-full", "addgene_id": "75154", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -37363,7 +47069,10 @@ "plasmid_name": "TFORF3376", "sequence-type": "addgene-full", "addgene_id": "144852", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144852.addgene-full.gb" }, @@ -37372,7 +47081,10 @@ "plasmid_name": "pDONR221_SLC44A1", "sequence-type": "addgene-full", "addgene_id": "131913", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131913.addgene-full.gb" }, @@ -37381,7 +47093,10 @@ "plasmid_name": "KIF1C", "sequence-type": "addgene-full", "addgene_id": "155687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155687.addgene-full.gb" }, @@ -37390,7 +47105,10 @@ "plasmid_name": "pDONR-IAA5", "sequence-type": "depositor-full", "addgene_id": "83867", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83867.depositor-full.gb" }, @@ -37399,7 +47117,10 @@ "plasmid_name": "pEBTetDBl-CLIP-\u03b1-tubulin", "sequence-type": "addgene-full", "addgene_id": "136841", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136841.addgene-full.gb" }, @@ -37408,7 +47129,9 @@ "plasmid_name": "pASZ-CN-DM", "sequence-type": "addgene-full", "addgene_id": "111234", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25814554" + ], "kit": null, "file": "data/addgene_plasmids/111234.addgene-full.gb" }, @@ -37417,7 +47140,10 @@ "plasmid_name": "pDONR221-SLC25A22_STOP", "sequence-type": "addgene-full", "addgene_id": "161217", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161217.addgene-full.gb" }, @@ -37426,7 +47152,10 @@ "plasmid_name": "pDEST-CMV-N-EGFP", "sequence-type": "addgene-full", "addgene_id": "122842", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/122842.addgene-full.gb" }, @@ -37435,7 +47164,10 @@ "plasmid_name": "pKLV-gRNA-Myb-Qk_1", "sequence-type": "addgene-full", "addgene_id": "136415", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03731-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29654229" + ], "kit": null, "file": "data/addgene_plasmids/136415.addgene-full.gb" }, @@ -37444,7 +47176,9 @@ "plasmid_name": "p5E-EF1a/b-globin", "sequence-type": "depositor-full", "addgene_id": "82582", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24643048" + ], "kit": null, "file": "data/addgene_plasmids/82582.depositor-full.gb" }, @@ -37453,7 +47187,10 @@ "plasmid_name": "pDONR223_SPOP_p.W131G", "sequence-type": "addgene-full", "addgene_id": "81632", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -37465,7 +47202,10 @@ "plasmid_name": "MAC_N_COMMD5", "sequence-type": "addgene-full", "addgene_id": "209678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209678.addgene-full.gb" }, @@ -37474,7 +47214,10 @@ "plasmid_name": "actc1b-mKate2-Dnm2b-DN", "sequence-type": "addgene-full", "addgene_id": "109522", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109522.addgene-full.gb" }, @@ -37483,7 +47226,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-Swa1::venus-RfA", "sequence-type": "addgene-full", "addgene_id": "186398", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186398.addgene-full.gb" }, @@ -37492,7 +47238,10 @@ "plasmid_name": "MAC-SARS-CoV-2 N", "sequence-type": "addgene-full", "addgene_id": "158370", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158370.addgene-full.gb" }, @@ -37501,7 +47250,10 @@ "plasmid_name": "pMXs-Oct3/4-IP", "sequence-type": "addgene-full", "addgene_id": "15918", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.07.024", + "https://www.ncbi.nlm.nih.gov/pubmed/16904174" + ], "kit": null, "file": "data/addgene_plasmids/15918.addgene-full.gb" }, @@ -37510,7 +47262,10 @@ "plasmid_name": "BCL6-GFP Y58A in Artichoke", "sequence-type": "addgene-full", "addgene_id": "169936", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2925-1", + "https://www.ncbi.nlm.nih.gov/pubmed/33208943" + ], "kit": null, "file": "data/addgene_plasmids/169936.addgene-full.gb" }, @@ -37519,7 +47274,10 @@ "plasmid_name": "pDONR223_GPR156_p.C763S", "sequence-type": "addgene-full", "addgene_id": "81549", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -37531,7 +47289,10 @@ "plasmid_name": "pSECB", "sequence-type": "addgene-full", "addgene_id": "106305", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106305.addgene-full.gb" }, @@ -37540,7 +47301,10 @@ "plasmid_name": "pDONR221_SLC22A23", "sequence-type": "addgene-full", "addgene_id": "131988", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131988.addgene-full.gb" }, @@ -37549,7 +47313,10 @@ "plasmid_name": "pEN_TT 3xFLAG-PFN2_variant2", "sequence-type": "addgene-full", "addgene_id": "192300", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192300.addgene-full.gb" }, @@ -37558,7 +47325,10 @@ "plasmid_name": "pGP8GF-AtAFB2", "sequence-type": "addgene-full", "addgene_id": "188426", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188426.addgene-full.gb" }, @@ -37567,7 +47337,10 @@ "plasmid_name": "actc1b-mKate2-rab9a", "sequence-type": "addgene-full", "addgene_id": "109659", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109659.addgene-full.gb" }, @@ -37576,7 +47349,10 @@ "plasmid_name": "pMSCV-MAP3K2", "sequence-type": "addgene-full", "addgene_id": "85652", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13320", + "https://www.ncbi.nlm.nih.gov/pubmed/24847881" + ], "kit": null, "file": "data/addgene_plasmids/85652.addgene-full.gb" }, @@ -37585,7 +47361,10 @@ "plasmid_name": "pDONR223_PRDM1_WT", "sequence-type": "addgene-full", "addgene_id": "81740", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -37609,7 +47388,10 @@ "plasmid_name": "pAG424GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14199", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -37621,7 +47403,10 @@ "plasmid_name": "pMMK ENTR 3 CMV mito mCherry", "sequence-type": "addgene-full", "addgene_id": "206256", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206256.addgene-full.gb" }, @@ -37630,7 +47415,6 @@ "plasmid_name": "R619-X67-527: His6-SARS-CoV-2 N", "sequence-type": "addgene-full", "addgene_id": "170204", - "references": [], "kit": null, "file": "data/addgene_plasmids/170204.addgene-full.gb" }, @@ -37639,7 +47423,9 @@ "plasmid_name": "pME nls EGFP-Cre (JDW 1329)", "sequence-type": "addgene-full", "addgene_id": "224515", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224515.addgene-full.gb" }, @@ -37648,7 +47434,10 @@ "plasmid_name": "pDONR221-SLC9A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161365", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161365.addgene-full.gb" }, @@ -37657,7 +47446,10 @@ "plasmid_name": "pFL-EGFP-3xFlag-DEST", "sequence-type": "addgene-full", "addgene_id": "134903", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111749", + "https://www.ncbi.nlm.nih.gov/pubmed/36476850" + ], "kit": null, "file": "data/addgene_plasmids/134903.addgene-full.gb" }, @@ -37666,7 +47458,10 @@ "plasmid_name": "TFORF3098", "sequence-type": "addgene-full", "addgene_id": "144574", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144574.addgene-full.gb" }, @@ -37675,7 +47470,10 @@ "plasmid_name": "TFORF3218", "sequence-type": "addgene-full", "addgene_id": "144694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144694.addgene-full.gb" }, @@ -37684,7 +47482,10 @@ "plasmid_name": "TFORF3444", "sequence-type": "addgene-full", "addgene_id": "144920", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144920.addgene-full.gb" }, @@ -37693,7 +47494,10 @@ "plasmid_name": "plenti-UbcP-FLAG-YWAA-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107375", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107375.addgene-full.gb" }, @@ -37702,7 +47506,6 @@ "plasmid_name": "pREP4xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79022", - "references": [], "kit": null, "file": "data/addgene_plasmids/79022.depositor-full.gb" }, @@ -37711,7 +47514,10 @@ "plasmid_name": "pHAGE-CCND1-T286I", "sequence-type": "addgene-full", "addgene_id": "116214", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116214.addgene-full.gb" }, @@ -37720,7 +47526,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK15_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158179", - "references": [], "kit": null, "file": "data/addgene_plasmids/158179.addgene-full.gb" }, @@ -37729,7 +47534,10 @@ "plasmid_name": "pDONR221-SLC10A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161085", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161085.addgene-full.gb" }, @@ -37738,7 +47546,10 @@ "plasmid_name": "LIIbeta R 4-5", "sequence-type": "depositor-full", "addgene_id": "54363", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54363.depositor-full.gb" }, @@ -37747,7 +47558,9 @@ "plasmid_name": "pLV-REPORT(PGKCMV)-nucTomato-hygro", "sequence-type": "addgene-full", "addgene_id": "208573", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/208573.addgene-full.gb" }, @@ -37756,7 +47569,10 @@ "plasmid_name": "pDONR223_NKX2-1_HD_160-223AA", "sequence-type": "addgene-full", "addgene_id": "221477", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221477.addgene-full.gb" }, @@ -37765,7 +47581,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 S_nostop", "sequence-type": "addgene-full", "addgene_id": "152988", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/152988.addgene-full.gb" }, @@ -37774,7 +47593,10 @@ "plasmid_name": "pAG416GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14364", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -37786,7 +47608,10 @@ "plasmid_name": "KO602: pMVP (L3-L2) HA tag + pA; CMV::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121802", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121802.addgene-full.gb" }, @@ -37795,7 +47620,10 @@ "plasmid_name": "pGCS-N3(3xFLAG)", "sequence-type": "addgene-full", "addgene_id": "85720", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -37807,7 +47635,10 @@ "plasmid_name": "CMYA5/pENTR3C", "sequence-type": "addgene-full", "addgene_id": "97408", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "file": "data/addgene_plasmids/97408.addgene-full.gb" }, @@ -37816,7 +47647,10 @@ "plasmid_name": "pGGEV_3'_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49304", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -37828,7 +47662,10 @@ "plasmid_name": "pYZ673", "sequence-type": "addgene-full", "addgene_id": "132953", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkaa329", + "https://www.ncbi.nlm.nih.gov/pubmed/32374858" + ], "kit": null, "file": "data/addgene_plasmids/132953.addgene-full.gb" }, @@ -37837,7 +47674,6 @@ "plasmid_name": "pLIX-hN1ICD", "sequence-type": "addgene-full", "addgene_id": "91897", - "references": [], "kit": null, "file": "data/addgene_plasmids/91897.addgene-full.gb" }, @@ -37846,7 +47682,6 @@ "plasmid_name": "pLIX_403", "sequence-type": "addgene-full", "addgene_id": "41395", - "references": [], "kit": null, "file": "data/addgene_plasmids/41395.addgene-full.gb" }, @@ -37855,7 +47690,9 @@ "plasmid_name": "pPB-cT3G-cERP2-RFX5", "sequence-type": "addgene-full", "addgene_id": "222545", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222545.addgene-full.gb" }, @@ -37864,7 +47701,6 @@ "plasmid_name": "p667-UBC-SBK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189899", - "references": [], "kit": null, "file": "data/addgene_plasmids/189899.addgene-full.gb" }, @@ -37873,7 +47709,10 @@ "plasmid_name": "A1-LCD+23G-23S-12F+12Y", "sequence-type": "addgene-full", "addgene_id": "178691", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178691.addgene-full.gb" }, @@ -37882,7 +47721,10 @@ "plasmid_name": "pDONR223_EGFR_p.Q1020H", "sequence-type": "addgene-full", "addgene_id": "82812", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82812.addgene-full.gb" }, @@ -37891,7 +47733,10 @@ "plasmid_name": "PPP6C_pLX307", "sequence-type": "addgene-full", "addgene_id": "98360", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98360.addgene-full.gb" }, @@ -37900,7 +47745,10 @@ "plasmid_name": "pLEX305-N-dTAG-CARD8-ZUC", "sequence-type": "addgene-full", "addgene_id": "169990", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169990.addgene-full.gb" }, @@ -37909,7 +47757,10 @@ "plasmid_name": "pCSF107mT-GATEWAY-3'-FLAG", "sequence-type": "addgene-full", "addgene_id": "67619", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2015.09.004", + "https://www.ncbi.nlm.nih.gov/pubmed/26391338" + ], "kit": null, "file": "data/addgene_plasmids/67619.addgene-full.gb" }, @@ -37918,7 +47769,10 @@ "plasmid_name": "MyoUTipGAPi", "sequence-type": "addgene-full", "addgene_id": "127549", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.20.00865", + "https://www.ncbi.nlm.nih.gov/pubmed/32764132" + ], "kit": null, "file": "data/addgene_plasmids/127549.addgene-full.gb" }, @@ -37927,7 +47781,10 @@ "plasmid_name": "pcDNA3.2/v5-DEST hGlut2", "sequence-type": "addgene-full", "addgene_id": "18086", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.09-146472", + "https://www.ncbi.nlm.nih.gov/pubmed/20354141" + ], "kit": null, "file": "data/addgene_plasmids/18086.addgene-full.gb" }, @@ -37936,7 +47793,10 @@ "plasmid_name": "pGWB-nLUC", "sequence-type": "addgene-full", "addgene_id": "174050", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1008933", + "https://www.ncbi.nlm.nih.gov/pubmed/32976518" + ], "kit": null, "file": "data/addgene_plasmids/174050.addgene-full.gb" }, @@ -37945,7 +47805,10 @@ "plasmid_name": "pGL3-MTS-G3635A-L17-FZY2-S100N-T26I&T77I-UGI-Puro", "sequence-type": "addgene-full", "addgene_id": "209645", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-42359-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37857619" + ], "kit": null, "file": "data/addgene_plasmids/209645.addgene-full.gb" }, @@ -37954,7 +47817,10 @@ "plasmid_name": "pAdCMV/V5-DEST-S727A-STAT3-3xFlag", "sequence-type": "addgene-full", "addgene_id": "99262", - "references": [], + "references": [ + "https://doi.org/10.1152/ajpcell.00235.2017", + "https://www.ncbi.nlm.nih.gov/pubmed/29351406" + ], "kit": null, "file": "data/addgene_plasmids/99262.addgene-full.gb" }, @@ -37963,7 +47829,10 @@ "plasmid_name": "pGWB450", "sequence-type": "depositor-full", "addgene_id": "74832", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74832.depositor-full.gb" }, @@ -37972,7 +47841,6 @@ "plasmid_name": "R777-E215 Hs.RALA", "sequence-type": "depositor-full", "addgene_id": "70499", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -37984,7 +47852,10 @@ "plasmid_name": "p3E-CDC42-DN", "sequence-type": "addgene-full", "addgene_id": "109584", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109584.addgene-full.gb" }, @@ -37993,7 +47864,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.G34V", "sequence-type": "addgene-full", "addgene_id": "81694", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81694.addgene-full.gb" }, @@ -38002,7 +47876,10 @@ "plasmid_name": "pFPL-Rh", "sequence-type": "addgene-full", "addgene_id": "61649", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-05-14-0144-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/25390188" + ], "kit": null, "file": "data/addgene_plasmids/61649.addgene-full.gb" }, @@ -38011,7 +47888,10 @@ "plasmid_name": "p8221 pLIX-PTPN14", "sequence-type": "addgene-full", "addgene_id": "221643", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "file": "data/addgene_plasmids/221643.addgene-full.gb" }, @@ -38020,7 +47900,10 @@ "plasmid_name": "5'-3xFLAG Med24+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212061", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212061.addgene-full.gb" }, @@ -38029,7 +47912,10 @@ "plasmid_name": "pDONR223_MAP2K1_WT", "sequence-type": "addgene-full", "addgene_id": "81920", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -38041,7 +47927,10 @@ "plasmid_name": "pDONR221-SLC18A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161151", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161151.addgene-full.gb" }, @@ -38050,7 +47939,10 @@ "plasmid_name": "pDONR223_ATF2_WT", "sequence-type": "addgene-full", "addgene_id": "82889", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82889.addgene-full.gb" }, @@ -38059,7 +47951,10 @@ "plasmid_name": "pENTR-BsaI", "sequence-type": "addgene-full", "addgene_id": "54340", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54340.addgene-full.gb" }, @@ -38068,7 +47963,6 @@ "plasmid_name": "R777-E019 Hs.CCND2", "sequence-type": "depositor-full", "addgene_id": "70303", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -38080,7 +47974,10 @@ "plasmid_name": "pDONR223_TRAF3_p.N312S", "sequence-type": "addgene-full", "addgene_id": "81574", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -38092,7 +47989,10 @@ "plasmid_name": "p3E-rab11ba", "sequence-type": "addgene-full", "addgene_id": "109664", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109664.addgene-full.gb" }, @@ -38101,7 +48001,10 @@ "plasmid_name": "TFORF3264", "sequence-type": "addgene-full", "addgene_id": "144740", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144740.addgene-full.gb" }, @@ -38110,7 +48013,6 @@ "plasmid_name": "pDONR223 Rab25-STOP", "sequence-type": "addgene-full", "addgene_id": "228034", - "references": [], "kit": null, "file": "data/addgene_plasmids/228034.addgene-full.gb" }, @@ -38119,7 +48021,10 @@ "plasmid_name": "pLD-puro-Cc-CR-PARK7C53A-VA", "sequence-type": "addgene-full", "addgene_id": "115189", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115189.addgene-full.gb" }, @@ -38128,7 +48033,10 @@ "plasmid_name": "pDONR221_TMEM104", "sequence-type": "addgene-full", "addgene_id": "132262", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132262.addgene-full.gb" }, @@ -38137,7 +48045,6 @@ "plasmid_name": "g16s pDONR", "sequence-type": "addgene-full", "addgene_id": "117473", - "references": [], "kit": null, "file": "data/addgene_plasmids/117473.addgene-full.gb" }, @@ -38146,7 +48053,10 @@ "plasmid_name": "PB-T3G-CERP2", "sequence-type": "addgene-full", "addgene_id": "175498", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175498.addgene-full.gb" }, @@ -38155,7 +48065,10 @@ "plasmid_name": "p8319 pDONR ATG-YAP1 WT-Stop", "sequence-type": "addgene-full", "addgene_id": "184524", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184524.addgene-full.gb" }, @@ -38164,7 +48077,10 @@ "plasmid_name": "MAC_N_TEAD2", "sequence-type": "addgene-full", "addgene_id": "167804", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167804.addgene-full.gb" }, @@ -38173,7 +48089,10 @@ "plasmid_name": "pENTR223-BGLF4", "sequence-type": "addgene-full", "addgene_id": "195811", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195811.addgene-full.gb" }, @@ -38182,7 +48101,10 @@ "plasmid_name": "Flag-HA-USP3", "sequence-type": "addgene-full", "addgene_id": "22582", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22582.addgene-full.gb" }, @@ -38191,7 +48113,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L1R5", "sequence-type": "depositor-full", "addgene_id": "113737", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -38203,7 +48128,6 @@ "plasmid_name": "pLenti6.2-ccdB-Nanoluc", "sequence-type": "addgene-full", "addgene_id": "87075", - "references": [], "kit": null, "file": "data/addgene_plasmids/87075.addgene-full.gb" }, @@ -38212,7 +48136,10 @@ "plasmid_name": "C514-E59: attB5r-RU5u-2xHA-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162966", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -38224,7 +48151,10 @@ "plasmid_name": "pAC150-RFP-EGFP-LGALS3", "sequence-type": "addgene-full", "addgene_id": "175778", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175778.addgene-full.gb" }, @@ -38233,7 +48163,10 @@ "plasmid_name": "pWZL Neo Myr Flag TK1", "sequence-type": "addgene-full", "addgene_id": "20652", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20652.addgene-full.gb" }, @@ -38242,7 +48175,10 @@ "plasmid_name": "GFP-BRD4", "sequence-type": "addgene-full", "addgene_id": "65378", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65378.addgene-full.gb" }, @@ -38251,7 +48187,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD3-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113488", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113488.addgene-full.gb" }, @@ -38260,7 +48199,10 @@ "plasmid_name": "pENTR221-Firefly", "sequence-type": "addgene-full", "addgene_id": "79495", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79495.addgene-full.gb" }, @@ -38269,7 +48211,9 @@ "plasmid_name": "pLX317-MBNL1", "sequence-type": "addgene-full", "addgene_id": "115443", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "file": "data/addgene_plasmids/115443.addgene-full.gb" }, @@ -38278,7 +48222,10 @@ "plasmid_name": "pDONR221_SLC5A5", "sequence-type": "addgene-full", "addgene_id": "132182", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132182.addgene-full.gb" }, @@ -38287,7 +48234,10 @@ "plasmid_name": "pENTR-L1-PGK-TKNeo-L2", "sequence-type": "addgene-full", "addgene_id": "141008", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141008.addgene-full.gb" }, @@ -38296,7 +48246,6 @@ "plasmid_name": "pEF 1-2A11-4", "sequence-type": "depositor-full", "addgene_id": "20089", - "references": [], "kit": null, "file": "data/addgene_plasmids/20089.depositor-full.gb" }, @@ -38305,7 +48254,10 @@ "plasmid_name": "pEAHISPA5006", "sequence-type": "addgene-full", "addgene_id": "97016", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97016.addgene-full.gb" }, @@ -38314,7 +48266,9 @@ "plasmid_name": "pMpGWB414", "sequence-type": "depositor-full", "addgene_id": "68679", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68679.depositor-full.gb" }, @@ -38323,7 +48277,10 @@ "plasmid_name": "pInducer20-Blast-CDT1-HA", "sequence-type": "addgene-full", "addgene_id": "109335", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.30473", + "https://www.ncbi.nlm.nih.gov/pubmed/29148972" + ], "kit": null, "file": "data/addgene_plasmids/109335.addgene-full.gb" }, @@ -38332,7 +48289,10 @@ "plasmid_name": "pDONR223 LC3C WT", "sequence-type": "addgene-full", "addgene_id": "123078", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123078.addgene-full.gb" }, @@ -38341,7 +48301,10 @@ "plasmid_name": "pDONR221_SLC37A2", "sequence-type": "addgene-full", "addgene_id": "132119", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132119.addgene-full.gb" }, @@ -38350,7 +48313,10 @@ "plasmid_name": "pDONR221-TMEM241_STOP", "sequence-type": "depositor-full", "addgene_id": "161462", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161462.depositor-full.gb" }, @@ -38359,7 +48325,10 @@ "plasmid_name": "pDONR221-SLC9A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161400", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161400.addgene-full.gb" }, @@ -38368,7 +48337,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-BirA(R118G)-NES-YFP", "sequence-type": "addgene-full", "addgene_id": "127363", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127363.addgene-full.gb" }, @@ -38377,7 +48349,10 @@ "plasmid_name": "MSCVhyg-HA-FLAG_Ubc9_WT", "sequence-type": "addgene-full", "addgene_id": "164936", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "file": "data/addgene_plasmids/164936.addgene-full.gb" }, @@ -38386,7 +48361,10 @@ "plasmid_name": "pT2-cryR;dll4CE2-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90144", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90144.addgene-full.gb" }, @@ -38407,7 +48385,10 @@ "plasmid_name": "pENTR D-TOPO-C3_31", "sequence-type": "depositor-full", "addgene_id": "60273", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60273.depositor-full.gb" }, @@ -38416,7 +48397,10 @@ "plasmid_name": "pHAGE-PIK3CD-K705E", "sequence-type": "addgene-full", "addgene_id": "116571", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116571.addgene-full.gb" }, @@ -38425,7 +48409,10 @@ "plasmid_name": "pDONR223_CBR3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83015", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83015.addgene-full.gb" }, @@ -38434,7 +48421,10 @@ "plasmid_name": "pJA258", "sequence-type": "depositor-full", "addgene_id": "21511", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "file": "data/addgene_plasmids/21511.depositor-full.gb" }, @@ -38443,7 +48433,10 @@ "plasmid_name": "pLenti6/UbC/mSlc7a1", "sequence-type": "addgene-full", "addgene_id": "17224", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.019", + "https://www.ncbi.nlm.nih.gov/pubmed/18035408" + ], "kit": null, "file": "data/addgene_plasmids/17224.addgene-full.gb" }, @@ -38452,7 +48445,10 @@ "plasmid_name": "pYPQ292", "sequence-type": "addgene-full", "addgene_id": "129672", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129672.addgene-full.gb" }, @@ -38461,7 +48457,10 @@ "plasmid_name": "pENTR-NLS-actin", "sequence-type": "addgene-full", "addgene_id": "118380", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118380.addgene-full.gb" }, @@ -38470,7 +48469,10 @@ "plasmid_name": "pHAGE-FLT4", "sequence-type": "addgene-full", "addgene_id": "116745", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116745.addgene-full.gb" }, @@ -38479,7 +48481,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-5", "sequence-type": "depositor-full", "addgene_id": "46700", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46700.depositor-full.gb" }, @@ -38488,7 +48493,10 @@ "plasmid_name": "pDONR223-MERTK", "sequence-type": "addgene-full", "addgene_id": "23900", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -38500,7 +48508,10 @@ "plasmid_name": "pTW327", "sequence-type": "addgene-full", "addgene_id": "115958", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115958.addgene-full.gb" }, @@ -38509,7 +48520,10 @@ "plasmid_name": "pDEST47-Arl13b12", "sequence-type": "addgene-full", "addgene_id": "40872", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E10-12-0994", + "https://www.ncbi.nlm.nih.gov/pubmed/21976698" + ], "kit": null, "file": "data/addgene_plasmids/40872.addgene-full.gb" }, @@ -38518,7 +48532,10 @@ "plasmid_name": "pCFJ1656", "sequence-type": "depositor-full", "addgene_id": "51483", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/51483.depositor-full.gb" }, @@ -38527,7 +48544,10 @@ "plasmid_name": "pLX304-EZH1-D745N", "sequence-type": "addgene-full", "addgene_id": "203585", - "references": [], + "references": [ + "https://doi.org/10.1126/scitranslmed.aal5272", + "https://www.ncbi.nlm.nih.gov/pubmed/28701475" + ], "kit": null, "file": "data/addgene_plasmids/203585.addgene-full.gb" }, @@ -38536,7 +48556,6 @@ "plasmid_name": "IDG_KCNJ15_OE_1", "sequence-type": "addgene-full", "addgene_id": "161634", - "references": [], "kit": null, "file": "data/addgene_plasmids/161634.addgene-full.gb" }, @@ -38545,7 +48564,10 @@ "plasmid_name": "Puro-iNgn3", "sequence-type": "depositor-full", "addgene_id": "75337", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2016.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/27133796" + ], "kit": null, "file": "data/addgene_plasmids/75337.depositor-full.gb" }, @@ -38554,7 +48576,9 @@ "plasmid_name": "pMpGWB309", "sequence-type": "depositor-full", "addgene_id": "68637", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68637.depositor-full.gb" }, @@ -38563,7 +48587,10 @@ "plasmid_name": "ACA8-YFPn", "sequence-type": "addgene-full", "addgene_id": "87241", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.111.192575", + "https://www.ncbi.nlm.nih.gov/pubmed/22535420" + ], "kit": null, "file": "data/addgene_plasmids/87241.addgene-full.gb" }, @@ -38572,7 +48599,10 @@ "plasmid_name": "pDONR/Zeo-sfGFP-SKL", "sequence-type": "addgene-full", "addgene_id": "186720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbrc.2018.06.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29885839" + ], "kit": null, "file": "data/addgene_plasmids/186720.addgene-full.gb" }, @@ -38581,7 +48611,10 @@ "plasmid_name": "pLEX307-mFzd7", "sequence-type": "addgene-full", "addgene_id": "102869", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "file": "data/addgene_plasmids/102869.addgene-full.gb" }, @@ -38590,7 +48623,6 @@ "plasmid_name": "pDEST26-Nluc-hTLR4", "sequence-type": "addgene-full", "addgene_id": "197641", - "references": [], "kit": null, "file": "data/addgene_plasmids/197641.addgene-full.gb" }, @@ -38599,7 +48631,10 @@ "plasmid_name": "pCM-HA-Gas1", "sequence-type": "depositor-full", "addgene_id": "38313", - "references": [], + "references": [ + "https://doi.org/10.1021/cb300235m", + "https://www.ncbi.nlm.nih.gov/pubmed/22724584" + ], "kit": null, "file": "data/addgene_plasmids/38313.depositor-full.gb" }, @@ -38608,7 +48643,10 @@ "plasmid_name": "pAG425GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14250", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -38620,7 +48658,6 @@ "plasmid_name": "pDONR221-psmg1", "sequence-type": "addgene-full", "addgene_id": "192723", - "references": [], "kit": null, "file": "data/addgene_plasmids/192723.addgene-full.gb" }, @@ -38629,7 +48666,10 @@ "plasmid_name": "pEX-SP-YFP-STIM1(23-685)", "sequence-type": "addgene-full", "addgene_id": "18857", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2005.05.055", + "https://www.ncbi.nlm.nih.gov/pubmed/16005298" + ], "kit": null, "file": "data/addgene_plasmids/18857.addgene-full.gb" }, @@ -38638,7 +48678,10 @@ "plasmid_name": "pDONR221_SLC26A6", "sequence-type": "addgene-full", "addgene_id": "132056", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132056.addgene-full.gb" }, @@ -38647,7 +48690,10 @@ "plasmid_name": "pPB-cT3G-cERP2-CEBPD", "sequence-type": "addgene-full", "addgene_id": "192897", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192897.addgene-full.gb" }, @@ -38656,7 +48702,10 @@ "plasmid_name": "PTPRA-SHC", "sequence-type": "addgene-full", "addgene_id": "139611", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139611.addgene-full.gb" }, @@ -38665,7 +48714,10 @@ "plasmid_name": "pDL141", "sequence-type": "addgene-full", "addgene_id": "175918", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175918.addgene-full.gb" }, @@ -38674,7 +48726,10 @@ "plasmid_name": "pDONR223_BRD4_WT", "sequence-type": "addgene-full", "addgene_id": "82323", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82323.addgene-full.gb" }, @@ -38683,7 +48738,10 @@ "plasmid_name": "pYZ145", "sequence-type": "addgene-full", "addgene_id": "98405", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.117.300363", + "https://www.ncbi.nlm.nih.gov/pubmed/29321167" + ], "kit": null, "file": "data/addgene_plasmids/98405.addgene-full.gb" }, @@ -38692,7 +48750,10 @@ "plasmid_name": "pENTR-R4R3-mRuby-C", "sequence-type": "addgene-full", "addgene_id": "113755", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -38704,7 +48765,10 @@ "plasmid_name": "pLCS108", "sequence-type": "addgene-full", "addgene_id": "209329", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209329.addgene-full.gb" }, @@ -38713,7 +48777,10 @@ "plasmid_name": "pDONR223-GK", "sequence-type": "addgene-full", "addgene_id": "23872", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -38725,7 +48792,10 @@ "plasmid_name": "NCH1ec", "sequence-type": "addgene-full", "addgene_id": "131016", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "file": "data/addgene_plasmids/131016.addgene-full.gb" }, @@ -38734,7 +48804,10 @@ "plasmid_name": "PCBP3_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176958", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176958.addgene-full.gb" }, @@ -38743,7 +48816,9 @@ "plasmid_name": "pMpGWB106", "sequence-type": "depositor-full", "addgene_id": "68560", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68560.depositor-full.gb" }, @@ -38752,7 +48827,10 @@ "plasmid_name": "pInducer 21-3xFlag-hMEFV-\u0394PYD", "sequence-type": "addgene-full", "addgene_id": "195478", - "references": [], + "references": [ + "https://doi.org/10.1038/s41419-023-05745-9", + "https://www.ncbi.nlm.nih.gov/pubmed/36966139" + ], "kit": null, "file": "data/addgene_plasmids/195478.addgene-full.gb" }, @@ -38761,7 +48839,10 @@ "plasmid_name": "pCSJ182", "sequence-type": "addgene-full", "addgene_id": "159723", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aal3655", + "https://www.ncbi.nlm.nih.gov/pubmed/28126757" + ], "kit": null, "file": "data/addgene_plasmids/159723.addgene-full.gb" }, @@ -38770,7 +48851,10 @@ "plasmid_name": "MAC_N_PAX7", "sequence-type": "addgene-full", "addgene_id": "187750", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187750.addgene-full.gb" }, @@ -38779,7 +48863,10 @@ "plasmid_name": "pD765 HMGCR 3'UTR", "sequence-type": "addgene-full", "addgene_id": "105766", - "references": [], + "references": [ + "https://doi.org/10.1038/srep40813", + "https://www.ncbi.nlm.nih.gov/pubmed/28102325" + ], "kit": null, "file": "data/addgene_plasmids/105766.addgene-full.gb" }, @@ -38788,7 +48875,10 @@ "plasmid_name": "pDONR223_HRH4_p.S170L", "sequence-type": "addgene-full", "addgene_id": "81363", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -38800,7 +48890,10 @@ "plasmid_name": "GFP-JIP3", "sequence-type": "addgene-full", "addgene_id": "164624", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164624.addgene-full.gb" }, @@ -38809,7 +48902,10 @@ "plasmid_name": "pENTR223-BFLF2", "sequence-type": "addgene-full", "addgene_id": "195798", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195798.addgene-full.gb" }, @@ -38818,7 +48914,10 @@ "plasmid_name": "pCfB13089", "sequence-type": "addgene-full", "addgene_id": "212676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymben.2024.09.003", + "https://www.ncbi.nlm.nih.gov/pubmed/39260817" + ], "kit": null, "file": "data/addgene_plasmids/212676.addgene-full.gb" }, @@ -38827,7 +48926,10 @@ "plasmid_name": "TTC3_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53851", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53851.addgene-full.gb" }, @@ -38836,7 +48938,10 @@ "plasmid_name": "pHAGE-PTEN-Y27D", "sequence-type": "addgene-full", "addgene_id": "116637", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116637.addgene-full.gb" }, @@ -38845,7 +48950,10 @@ "plasmid_name": "pENTR-L5-CMV-R3", "sequence-type": "addgene-full", "addgene_id": "141035", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141035.addgene-full.gb" }, @@ -38854,7 +48962,10 @@ "plasmid_name": "pWS626", "sequence-type": "addgene-full", "addgene_id": "123045", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123045.addgene-full.gb" }, @@ -38863,7 +48974,6 @@ "plasmid_name": "R777-E165 Hs.PIK3CB", "sequence-type": "depositor-full", "addgene_id": "70449", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -38875,7 +48985,10 @@ "plasmid_name": "pDONR221_SLC31A2", "sequence-type": "addgene-full", "addgene_id": "132124", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132124.addgene-full.gb" }, @@ -38884,7 +48997,9 @@ "plasmid_name": "pcDNA5-miniTurbo-TAF5-\u2206ex8", "sequence-type": "addgene-full", "addgene_id": "209052", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209052.addgene-full.gb" }, @@ -38893,7 +49008,10 @@ "plasmid_name": "pLX311 Luciferase", "sequence-type": "addgene-full", "addgene_id": "117735", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117735.addgene-full.gb" }, @@ -38902,7 +49020,10 @@ "plasmid_name": "pDONR223_SGK3_WT", "sequence-type": "addgene-full", "addgene_id": "82251", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82251.addgene-full.gb" }, @@ -38911,7 +49032,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0391-luc2", "sequence-type": "addgene-full", "addgene_id": "214626", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214626.addgene-full.gb" }, @@ -38920,7 +49044,6 @@ "plasmid_name": "pHAGE-APEX2-nDEST", "sequence-type": "addgene-full", "addgene_id": "214992", - "references": [], "kit": null, "file": "data/addgene_plasmids/214992.addgene-full.gb" }, @@ -38929,7 +49052,10 @@ "plasmid_name": "pUB6_EZH2", "sequence-type": "depositor-full", "addgene_id": "84014", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2015.04.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25965569" + ], "kit": null, "file": "data/addgene_plasmids/84014.depositor-full.gb" }, @@ -38938,7 +49064,10 @@ "plasmid_name": "BirA-Myc_N_MYOD1", "sequence-type": "addgene-full", "addgene_id": "167716", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167716.addgene-full.gb" }, @@ -38947,7 +49076,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NI_G1333-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171725", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171725.addgene-full.gb" }, @@ -38956,7 +49088,6 @@ "plasmid_name": "BRAF - R726C in pENTR", "sequence-type": "addgene-full", "addgene_id": "216616", - "references": [], "kit": null, "file": "data/addgene_plasmids/216616.addgene-full.gb" }, @@ -38965,7 +49096,10 @@ "plasmid_name": "pCMB-ACTLg", "sequence-type": "depositor-full", "addgene_id": "61195", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61195.depositor-full.gb" }, @@ -38974,7 +49108,6 @@ "plasmid_name": "Hs.KRAS4b M72C", "sequence-type": "depositor-full", "addgene_id": "83160", - "references": [], "kit": null, "file": "data/addgene_plasmids/83160.depositor-full.gb" }, @@ -38983,7 +49116,10 @@ "plasmid_name": "pBp-FGFR2c-WT", "sequence-type": "addgene-full", "addgene_id": "45699", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-12-3950", + "https://www.ncbi.nlm.nih.gov/pubmed/23786770" + ], "kit": null, "file": "data/addgene_plasmids/45699.addgene-full.gb" }, @@ -38992,7 +49128,10 @@ "plasmid_name": "pAG423GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14149", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -39004,7 +49143,10 @@ "plasmid_name": "pMARO", "sequence-type": "addgene-full", "addgene_id": "178086", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2021.102608", + "https://www.ncbi.nlm.nih.gov/pubmed/34801582" + ], "kit": null, "file": "data/addgene_plasmids/178086.addgene-full.gb" }, @@ -39013,7 +49155,10 @@ "plasmid_name": "pHAGE-PRKD1", "sequence-type": "addgene-full", "addgene_id": "116778", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116778.addgene-full.gb" }, @@ -39022,7 +49167,9 @@ "plasmid_name": "pENTR4 CDS A. thaliana MAMI", "sequence-type": "addgene-full", "addgene_id": "209186", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.09.25.558804" + ], "kit": null, "file": "data/addgene_plasmids/209186.addgene-full.gb" }, @@ -39031,7 +49178,10 @@ "plasmid_name": "pCM5.32", "sequence-type": "depositor-full", "addgene_id": "19397", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19397.depositor-full.gb" }, @@ -39040,7 +49190,10 @@ "plasmid_name": "pDRM56 tet-AR(1-707)C617Y", "sequence-type": "addgene-full", "addgene_id": "183504", - "references": [], + "references": [ + "https://doi.org/10.1038/s41591-020-01168-7", + "https://www.ncbi.nlm.nih.gov/pubmed/33462444" + ], "kit": null, "file": "data/addgene_plasmids/183504.addgene-full.gb" }, @@ -39049,7 +49202,10 @@ "plasmid_name": "pJB555", "sequence-type": "addgene-full", "addgene_id": "115965", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115965.addgene-full.gb" }, @@ -39058,7 +49214,10 @@ "plasmid_name": "p6599 MSCV-IP N-HAonly FOSL1", "sequence-type": "addgene-full", "addgene_id": "34897", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1116776109", + "https://www.ncbi.nlm.nih.gov/pubmed/22232672" + ], "kit": null, "file": "data/addgene_plasmids/34897.addgene-full.gb" }, @@ -39067,7 +49226,6 @@ "plasmid_name": "pSLIK CXADR-V5 hygro", "sequence-type": "addgene-full", "addgene_id": "220362", - "references": [], "kit": null, "file": "data/addgene_plasmids/220362.addgene-full.gb" }, @@ -39076,7 +49234,10 @@ "plasmid_name": "pHAGE-PIK3CA-G451V", "sequence-type": "addgene-full", "addgene_id": "116498", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116498.addgene-full.gb" }, @@ -39085,7 +49246,6 @@ "plasmid_name": "pENTR-tTAF2", "sequence-type": "addgene-full", "addgene_id": "139557", - "references": [], "kit": null, "file": "data/addgene_plasmids/139557.addgene-full.gb" }, @@ -39094,7 +49254,10 @@ "plasmid_name": "pBullet-end-c", "sequence-type": "depositor-full", "addgene_id": "53074", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53074.depositor-full.gb" }, @@ -39103,7 +49266,10 @@ "plasmid_name": "pDONR221-NIPA1", "sequence-type": "addgene-full", "addgene_id": "132310", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132310.addgene-full.gb" }, @@ -39112,7 +49278,6 @@ "plasmid_name": "p667-UBC-GFP-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135242", - "references": [], "kit": null, "file": "data/addgene_plasmids/135242.addgene-full.gb" }, @@ -39121,7 +49286,10 @@ "plasmid_name": "gSCPL35-mRFP", "sequence-type": "addgene-full", "addgene_id": "181960", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.360", + "https://www.ncbi.nlm.nih.gov/pubmed/34877448" + ], "kit": null, "file": "data/addgene_plasmids/181960.addgene-full.gb" }, @@ -39130,7 +49298,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-UD-S32", "sequence-type": "addgene-full", "addgene_id": "140303", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140303.addgene-full.gb" }, @@ -39139,7 +49310,6 @@ "plasmid_name": "IDG_KCNMB4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161692", - "references": [], "kit": null, "file": "data/addgene_plasmids/161692.addgene-full.gb" }, @@ -39148,7 +49318,10 @@ "plasmid_name": "pMuLE ENTR SV40 mCherry L3-L2", "sequence-type": "depositor-full", "addgene_id": "62150", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62150.depositor-full.gb" }, @@ -39157,7 +49330,6 @@ "plasmid_name": "pX458-Ef1a-dCas9-VPR-H2B-GFP (CRISPRa)", "sequence-type": "addgene-full", "addgene_id": "175571", - "references": [], "kit": null, "file": "data/addgene_plasmids/175571.addgene-full.gb" }, @@ -39166,7 +49338,6 @@ "plasmid_name": "R777-E123 Hs.MAP2K2", "sequence-type": "depositor-full", "addgene_id": "70407", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -39178,7 +49349,10 @@ "plasmid_name": "MAC-TOP3B", "sequence-type": "addgene-full", "addgene_id": "172423", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172423.addgene-full.gb" }, @@ -39187,7 +49361,10 @@ "plasmid_name": "pCFJ1137", "sequence-type": "depositor-full", "addgene_id": "84827", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.072", + "https://www.ncbi.nlm.nih.gov/pubmed/27374334" + ], "kit": null, "file": "data/addgene_plasmids/84827.depositor-full.gb" }, @@ -39196,7 +49373,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS2", "sequence-type": "depositor-full", "addgene_id": "59390", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.045005.114", + "https://www.ncbi.nlm.nih.gov/pubmed/24860013" + ], "kit": null, "file": "data/addgene_plasmids/59390.depositor-full.gb" }, @@ -39205,7 +49385,6 @@ "plasmid_name": "pAM-35s-CBL9-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102400", - "references": [], "kit": null, "file": "data/addgene_plasmids/102400.addgene-full.gb" }, @@ -39214,7 +49393,6 @@ "plasmid_name": "pENTR3cDual-Fray", "sequence-type": "addgene-full", "addgene_id": "203977", - "references": [], "kit": null, "file": "data/addgene_plasmids/203977.addgene-full.gb" }, @@ -39223,7 +49401,10 @@ "plasmid_name": "pLX304 GFP", "sequence-type": "addgene-full", "addgene_id": "193687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193687.addgene-full.gb" }, @@ -39232,7 +49413,10 @@ "plasmid_name": "pDL215", "sequence-type": "addgene-full", "addgene_id": "175925", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175925.addgene-full.gb" }, @@ -39241,7 +49425,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND R394E", "sequence-type": "addgene-full", "addgene_id": "169971", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169971.addgene-full.gb" }, @@ -39250,7 +49437,10 @@ "plasmid_name": "pAG303GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14278", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -39262,7 +49452,10 @@ "plasmid_name": "UQCRB_pLX307", "sequence-type": "addgene-full", "addgene_id": "98381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98381.addgene-full.gb" }, @@ -39271,7 +49464,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF7B", "sequence-type": "addgene-full", "addgene_id": "154422", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154422.addgene-full.gb" }, @@ -39280,7 +49476,10 @@ "plasmid_name": "p3E-mScarlet", "sequence-type": "addgene-full", "addgene_id": "140875", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/140875.addgene-full.gb" }, @@ -39289,7 +49488,10 @@ "plasmid_name": "pEXP(FLAG/HA-NSP1-WT)", "sequence-type": "addgene-full", "addgene_id": "188781", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0297262", + "https://www.ncbi.nlm.nih.gov/pubmed/38277395" + ], "kit": null, "file": "data/addgene_plasmids/188781.addgene-full.gb" }, @@ -39298,7 +49500,6 @@ "plasmid_name": "Mouse-Dysferlin-Transcript-Variant2", "sequence-type": "depositor-full", "addgene_id": "60215", - "references": [], "kit": null, "file": "data/addgene_plasmids/60215.depositor-full.gb" }, @@ -39307,7 +49508,10 @@ "plasmid_name": "JDW 295 (pDONR-Dll4-F2-ETS#2-WT-8X)", "sequence-type": "addgene-full", "addgene_id": "156412", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156412.addgene-full.gb" }, @@ -39316,7 +49520,10 @@ "plasmid_name": "pME-mVenus-NS", "sequence-type": "addgene-full", "addgene_id": "80497", - "references": [], + "references": [ + "https://doi.org/10.1080/21592799.2017.1301151", + "https://www.ncbi.nlm.nih.gov/pubmed/28396820" + ], "kit": null, "file": "data/addgene_plasmids/80497.addgene-full.gb" }, @@ -39325,7 +49532,9 @@ "plasmid_name": "pLV-SFFVp-CRISPRoffv2.1-IRES-BlastR", "sequence-type": "addgene-full", "addgene_id": "207181", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207181.addgene-full.gb" }, @@ -39334,7 +49543,10 @@ "plasmid_name": "MLKS2exp", "sequence-type": "addgene-full", "addgene_id": "130856", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "file": "data/addgene_plasmids/130856.addgene-full.gb" }, @@ -39343,7 +49555,10 @@ "plasmid_name": "pDONR223_ZBTB24_p.G693S", "sequence-type": "addgene-full", "addgene_id": "82868", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82868.addgene-full.gb" }, @@ -39352,7 +49567,10 @@ "plasmid_name": "pMTL5", "sequence-type": "addgene-full", "addgene_id": "127967", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2019.07.014", + "https://www.ncbi.nlm.nih.gov/pubmed/31422865" + ], "kit": null, "file": "data/addgene_plasmids/127967.addgene-full.gb" }, @@ -39361,7 +49579,10 @@ "plasmid_name": "pDONR223_RB1_p.R451H", "sequence-type": "addgene-full", "addgene_id": "81595", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -39373,7 +49594,10 @@ "plasmid_name": "hu\u03b2B1cry:mAppleCAAX", "sequence-type": "addgene-full", "addgene_id": "122451", - "references": [], + "references": [ + "https://doi.org/10.3791/59528", + "https://www.ncbi.nlm.nih.gov/pubmed/31107462" + ], "kit": null, "file": "data/addgene_plasmids/122451.addgene-full.gb" }, @@ -39382,7 +49606,10 @@ "plasmid_name": "pEBTet-SNAP-Centrin3", "sequence-type": "addgene-full", "addgene_id": "136806", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136806.addgene-full.gb" }, @@ -39391,7 +49618,10 @@ "plasmid_name": "pCAGGS-4591NES", "sequence-type": "addgene-full", "addgene_id": "138377", - "references": [], + "references": [ + "https://doi.org/10.1021/acssensors.9b01941", + "https://www.ncbi.nlm.nih.gov/pubmed/32101394" + ], "kit": null, "file": "data/addgene_plasmids/138377.addgene-full.gb" }, @@ -39400,7 +49630,10 @@ "plasmid_name": "p3E-rab27a", "sequence-type": "addgene-full", "addgene_id": "109685", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109685.addgene-full.gb" }, @@ -39409,7 +49642,6 @@ "plasmid_name": "pLenti6.3/pr-Membrane", "sequence-type": "addgene-full", "addgene_id": "120835", - "references": [], "kit": null, "file": "data/addgene_plasmids/120835.addgene-full.gb" }, @@ -39418,7 +49650,10 @@ "plasmid_name": "pDONR221_MTCH2", "sequence-type": "addgene-full", "addgene_id": "131954", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131954.addgene-full.gb" }, @@ -39427,7 +49662,10 @@ "plasmid_name": "MiniCoopR mitfa:EGFP", "sequence-type": "addgene-full", "addgene_id": "118850", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118850.addgene-full.gb" }, @@ -39436,7 +49674,10 @@ "plasmid_name": "pDONR223-ZNF626", "sequence-type": "addgene-full", "addgene_id": "88002", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88002.addgene-full.gb" }, @@ -39445,7 +49686,10 @@ "plasmid_name": "TFORF3339", "sequence-type": "addgene-full", "addgene_id": "144815", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144815.addgene-full.gb" }, @@ -39454,7 +49698,10 @@ "plasmid_name": "35S-GWY-GAL4BD/pAM", "sequence-type": "addgene-full", "addgene_id": "201231", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16234", + "https://www.ncbi.nlm.nih.gov/pubmed/37323061" + ], "kit": null, "file": "data/addgene_plasmids/201231.addgene-full.gb" }, @@ -39463,7 +49710,10 @@ "plasmid_name": "p3E-EHD1a-dEH", "sequence-type": "addgene-full", "addgene_id": "109565", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109565.addgene-full.gb" }, @@ -39472,7 +49722,10 @@ "plasmid_name": "TFORF2965", "sequence-type": "addgene-full", "addgene_id": "144441", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144441.addgene-full.gb" }, @@ -39481,7 +49734,6 @@ "plasmid_name": "p2K7-RIP-Tomato-EFs-Tk::Sh", "sequence-type": "addgene-full", "addgene_id": "114311", - "references": [], "kit": null, "file": "data/addgene_plasmids/114311.addgene-full.gb" }, @@ -39490,7 +49742,10 @@ "plasmid_name": "pENTR-R4R3-3xmEGFP-C", "sequence-type": "depositor-full", "addgene_id": "113751", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -39502,7 +49757,10 @@ "plasmid_name": "pDONR223_VHL_p.S111N", "sequence-type": "addgene-full", "addgene_id": "81675", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -39514,7 +49772,10 @@ "plasmid_name": "5'-3xFLAG Chtop-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212080", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212080.addgene-full.gb" }, @@ -39523,7 +49784,10 @@ "plasmid_name": "pDONR221-SLC36A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161250", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161250.addgene-full.gb" }, @@ -39532,7 +49796,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir129-2-2", "sequence-type": "depositor-full", "addgene_id": "46728", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46728.depositor-full.gb" }, @@ -39541,7 +49808,10 @@ "plasmid_name": "actc1b-actn2-mKate2", "sequence-type": "addgene-full", "addgene_id": "109751", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109751.addgene-full.gb" }, @@ -39550,7 +49820,10 @@ "plasmid_name": "TFORF3199", "sequence-type": "addgene-full", "addgene_id": "144675", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144675.addgene-full.gb" }, @@ -39559,7 +49832,10 @@ "plasmid_name": "pMP71-hCD155", "sequence-type": "addgene-full", "addgene_id": "118630", - "references": [], + "references": [ + "https://doi.org/10.1158/2326-6066.CIR-18-0351", + "https://www.ncbi.nlm.nih.gov/pubmed/30659053" + ], "kit": null, "file": "data/addgene_plasmids/118630.addgene-full.gb" }, @@ -39568,7 +49844,10 @@ "plasmid_name": "pDONR221_DIRC2", "sequence-type": "addgene-full", "addgene_id": "131880", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131880.addgene-full.gb" }, @@ -39577,7 +49856,6 @@ "plasmid_name": "R777-E301 Hs.RPTOR", "sequence-type": "depositor-full", "addgene_id": "70585", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -39589,7 +49867,10 @@ "plasmid_name": "pEN12A-P1", "sequence-type": "depositor-full", "addgene_id": "27366", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "file": "data/addgene_plasmids/27366.depositor-full.gb" }, @@ -39598,7 +49879,9 @@ "plasmid_name": "pDONR221-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166136", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166136.addgene-full.gb" }, @@ -39607,7 +49890,10 @@ "plasmid_name": "pDONR221-SLC15A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161064", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161064.addgene-full.gb" }, @@ -39616,7 +49902,9 @@ "plasmid_name": "pMpGWB323", "sequence-type": "depositor-full", "addgene_id": "68651", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68651.depositor-full.gb" }, @@ -39625,7 +49913,10 @@ "plasmid_name": "pDONR223_OMA1_p.P177S", "sequence-type": "addgene-full", "addgene_id": "81441", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -39637,7 +49928,10 @@ "plasmid_name": "pME-nlsGal80(opt)", "sequence-type": "depositor-full", "addgene_id": "51618", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.22734", + "https://www.ncbi.nlm.nih.gov/pubmed/21905164" + ], "kit": null, "file": "data/addgene_plasmids/51618.depositor-full.gb" }, @@ -39646,7 +49940,10 @@ "plasmid_name": "pDONR223_DNASE2_WT", "sequence-type": "addgene-full", "addgene_id": "81815", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -39658,7 +49955,10 @@ "plasmid_name": "pDONR221-SLC5A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161384", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161384.addgene-full.gb" }, @@ -39667,7 +49967,10 @@ "plasmid_name": "pAAV2-DEST(r)", "sequence-type": "addgene-full", "addgene_id": "190238", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190238.addgene-full.gb" }, @@ -39676,7 +49979,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 ORF3A_nostop", "sequence-type": "addgene-full", "addgene_id": "149319", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149319.addgene-full.gb" }, @@ -39685,7 +49991,10 @@ "plasmid_name": "pHAGE-ARAF-S217F", "sequence-type": "addgene-full", "addgene_id": "116115", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116115.addgene-full.gb" }, @@ -39694,7 +50003,6 @@ "plasmid_name": "pPV477", "sequence-type": "depositor-full", "addgene_id": "42930", - "references": [], "kit": null, "file": "data/addgene_plasmids/42930.depositor-full.gb" }, @@ -39703,7 +50011,10 @@ "plasmid_name": "pMOS030: ratiometric pHluorin (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163054", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163054.addgene-full.gb" }, @@ -39712,7 +50023,10 @@ "plasmid_name": "TFORF3119", "sequence-type": "addgene-full", "addgene_id": "144595", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144595.addgene-full.gb" }, @@ -39721,7 +50035,10 @@ "plasmid_name": "pLEX307-HCoV-NL63-3CL", "sequence-type": "addgene-full", "addgene_id": "160286", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160286.addgene-full.gb" }, @@ -39730,7 +50047,10 @@ "plasmid_name": "pTKan-p35S::Csy4-pNOS::cogGFP (C132, JBEI-15898)", "sequence-type": "addgene-full", "addgene_id": "110145", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.6b00295", + "https://www.ncbi.nlm.nih.gov/pubmed/28094975" + ], "kit": null, "file": "data/addgene_plasmids/110145.addgene-full.gb" }, @@ -39739,7 +50059,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK17B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189878", - "references": [], "kit": null, "file": "data/addgene_plasmids/189878.addgene-full.gb" }, @@ -39748,7 +50067,9 @@ "plasmid_name": "bactin:GFP-PCNA", "sequence-type": "depositor-full", "addgene_id": "105979", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30120238" + ], "kit": null, "file": "data/addgene_plasmids/105979.depositor-full.gb" }, @@ -39757,7 +50078,10 @@ "plasmid_name": "A1-LCD-6R+6K", "sequence-type": "addgene-full", "addgene_id": "178670", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178670.addgene-full.gb" }, @@ -39766,7 +50090,10 @@ "plasmid_name": "Ash1", "sequence-type": "addgene-full", "addgene_id": "169711", - "references": [], + "references": [ + "https://doi.org/10.1021/jacs.6b10272", + "https://www.ncbi.nlm.nih.gov/pubmed/27807972" + ], "kit": null, "file": "data/addgene_plasmids/169711.addgene-full.gb" }, @@ -39775,7 +50102,10 @@ "plasmid_name": "pDONR223_MYC_WT", "sequence-type": "addgene-full", "addgene_id": "82927", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82927.addgene-full.gb" }, @@ -39784,7 +50114,10 @@ "plasmid_name": "IX907: pMVP (L3-L2) 3x epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121757", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121757.addgene-full.gb" }, @@ -39793,7 +50126,10 @@ "plasmid_name": "p6351 MSCV-CMV-CMV-Flag-HA-NSD3", "sequence-type": "addgene-full", "addgene_id": "31357", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.01341-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21555454" + ], "kit": null, "file": "data/addgene_plasmids/31357.addgene-full.gb" }, @@ -39802,7 +50138,9 @@ "plasmid_name": "p3E-nlsGFP pA", "sequence-type": "depositor-full", "addgene_id": "80814", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80814.depositor-full.gb" }, @@ -39811,7 +50149,9 @@ "plasmid_name": "pME-H2B-V5-n2StayGoldC4 (JDW 1354)", "sequence-type": "addgene-full", "addgene_id": "224486", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224486.addgene-full.gb" }, @@ -39820,7 +50160,10 @@ "plasmid_name": "pGWB554", "sequence-type": "depositor-full", "addgene_id": "74884", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74884.depositor-full.gb" }, @@ -39829,7 +50172,10 @@ "plasmid_name": "pDONR223 HCoV-229E NSP15_stop", "sequence-type": "addgene-full", "addgene_id": "168761", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168761.addgene-full.gb" }, @@ -39838,7 +50184,10 @@ "plasmid_name": "pENTR1A dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134724", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "file": "data/addgene_plasmids/134724.addgene-full.gb" }, @@ -39847,7 +50196,10 @@ "plasmid_name": "pGWT35S-VC155", "sequence-type": "addgene-full", "addgene_id": "194051", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "file": "data/addgene_plasmids/194051.addgene-full.gb" }, @@ -39856,7 +50208,10 @@ "plasmid_name": "pMuLE Lenti Dest Neo", "sequence-type": "depositor-full", "addgene_id": "62178", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62178.depositor-full.gb" }, @@ -39865,7 +50220,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mClover3-RfA", "sequence-type": "addgene-full", "addgene_id": "186379", - "references": [], "kit": null, "file": "data/addgene_plasmids/186379.addgene-full.gb" }, @@ -39874,7 +50228,10 @@ "plasmid_name": "pMpGWB337", "sequence-type": "depositor-full", "addgene_id": "68061", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcv102", + "https://www.ncbi.nlm.nih.gov/pubmed/26148498" + ], "kit": null, "file": "data/addgene_plasmids/68061.depositor-full.gb" }, @@ -39883,7 +50240,10 @@ "plasmid_name": "pGW-FL-V5", "sequence-type": "depositor-full", "addgene_id": "78858", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "file": "data/addgene_plasmids/78858.depositor-full.gb" }, @@ -39892,7 +50252,10 @@ "plasmid_name": "pHAGE-FGFR3-S351C", "sequence-type": "addgene-full", "addgene_id": "116387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116387.addgene-full.gb" }, @@ -39901,7 +50264,10 @@ "plasmid_name": "TFORF3231", "sequence-type": "addgene-full", "addgene_id": "144707", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144707.addgene-full.gb" }, @@ -39910,7 +50276,10 @@ "plasmid_name": "actc1b-mKate2-rab33a", "sequence-type": "addgene-full", "addgene_id": "109623", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109623.addgene-full.gb" }, @@ -39919,7 +50288,10 @@ "plasmid_name": "pDONR223_PIK3CB_p.A1048V", "sequence-type": "addgene-full", "addgene_id": "81533", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -39931,7 +50303,10 @@ "plasmid_name": "pAG413GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14406", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -39943,7 +50318,9 @@ "plasmid_name": "Ttx-3-mCherry-SL2-Post-SPHERE-SF-iGluSnFR", "sequence-type": "addgene-full", "addgene_id": "187100", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.04.03.486903" + ], "kit": null, "file": "data/addgene_plasmids/187100.addgene-full.gb" }, @@ -39952,7 +50329,10 @@ "plasmid_name": "pDONR221-SLC10A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161116", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161116.addgene-full.gb" }, @@ -39961,7 +50341,10 @@ "plasmid_name": "pME-EGFP-P2A-APEX2-NS", "sequence-type": "addgene-full", "addgene_id": "108895", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "file": "data/addgene_plasmids/108895.addgene-full.gb" }, @@ -39970,7 +50353,6 @@ "plasmid_name": "R777-E130 Hs.MDM2-nostop", "sequence-type": "addgene-full", "addgene_id": "70414", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -39982,7 +50364,10 @@ "plasmid_name": "pDONR221-HOXB3", "sequence-type": "depositor-full", "addgene_id": "101478", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101478.depositor-full.gb" }, @@ -39991,7 +50376,10 @@ "plasmid_name": "pQLinkHD-SYNZIP3", "sequence-type": "depositor-full", "addgene_id": "80659", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "file": "data/addgene_plasmids/80659.depositor-full.gb" }, @@ -40000,7 +50388,10 @@ "plasmid_name": "pDONR223_EGFR_p.773_774insH", "sequence-type": "addgene-full", "addgene_id": "82855", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82855.addgene-full.gb" }, @@ -40009,7 +50400,10 @@ "plasmid_name": "pAG305GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14161", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -40021,7 +50415,10 @@ "plasmid_name": "TFORF3352", "sequence-type": "addgene-full", "addgene_id": "144828", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144828.addgene-full.gb" }, @@ -40030,7 +50427,10 @@ "plasmid_name": "pDONR221_SLC25A31", "sequence-type": "addgene-full", "addgene_id": "131969", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131969.addgene-full.gb" }, @@ -40039,7 +50439,6 @@ "plasmid_name": "Hs.KRAS4b R68S", "sequence-type": "depositor-full", "addgene_id": "83148", - "references": [], "kit": null, "file": "data/addgene_plasmids/83148.depositor-full.gb" }, @@ -40048,7 +50447,10 @@ "plasmid_name": "pCZGY1534 tomm-20N::miniSOG in pENTR[1-2]", "sequence-type": "depositor-full", "addgene_id": "66753", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1204096109", + "https://www.ncbi.nlm.nih.gov/pubmed/22532663" + ], "kit": null, "file": "data/addgene_plasmids/66753.depositor-full.gb" }, @@ -40057,7 +50459,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp2", "sequence-type": "depositor-full", "addgene_id": "168968", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168968.depositor-full.gb" }, @@ -40066,7 +50471,10 @@ "plasmid_name": "pME-GalT", "sequence-type": "addgene-full", "addgene_id": "109558", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109558.addgene-full.gb" }, @@ -40075,7 +50483,10 @@ "plasmid_name": "pDONR221-SLC13A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161087", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161087.depositor-full.gb" }, @@ -40084,7 +50495,10 @@ "plasmid_name": "Lenti-EFS-EGFP-T2A-Bsd", "sequence-type": "addgene-full", "addgene_id": "193198", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.111990", + "https://www.ncbi.nlm.nih.gov/pubmed/36640300" + ], "kit": null, "file": "data/addgene_plasmids/193198.addgene-full.gb" }, @@ -40093,7 +50507,10 @@ "plasmid_name": "pENTR-D-kcnj15", "sequence-type": "addgene-full", "addgene_id": "173145", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173145.addgene-full.gb" }, @@ -40102,7 +50519,10 @@ "plasmid_name": "COPE_pLX307", "sequence-type": "addgene-full", "addgene_id": "98327", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98327.addgene-full.gb" }, @@ -40111,7 +50531,9 @@ "plasmid_name": "pDRf1-4CL5-AtSCT (JBEI-11557)", "sequence-type": "addgene-full", "addgene_id": "87937", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27871334" + ], "kit": null, "file": "data/addgene_plasmids/87937.addgene-full.gb" }, @@ -40120,7 +50542,10 @@ "plasmid_name": "pDONR223_HAPLN1_p.P233H", "sequence-type": "addgene-full", "addgene_id": "81648", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -40132,7 +50557,9 @@ "plasmid_name": "p5E-gfap", "sequence-type": "addgene-full", "addgene_id": "82401", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82401.addgene-full.gb" }, @@ -40141,7 +50568,10 @@ "plasmid_name": "pPN458", "sequence-type": "addgene-full", "addgene_id": "137876", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "file": "data/addgene_plasmids/137876.addgene-full.gb" }, @@ -40150,7 +50580,10 @@ "plasmid_name": "pENTR-R4r-EYFP-R3r", "sequence-type": "depositor-full", "addgene_id": "32412", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32412.depositor-full.gb" }, @@ -40159,7 +50592,10 @@ "plasmid_name": "pCSCherryN5icd", "sequence-type": "depositor-full", "addgene_id": "22456", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/22456.depositor-full.gb" }, @@ -40168,7 +50604,10 @@ "plasmid_name": "TFORF3172", "sequence-type": "addgene-full", "addgene_id": "144648", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144648.addgene-full.gb" }, @@ -40177,7 +50616,10 @@ "plasmid_name": "dpYPQ230-D156R-CBE1", "sequence-type": "addgene-full", "addgene_id": "195367", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "file": "data/addgene_plasmids/195367.addgene-full.gb" }, @@ -40186,7 +50628,10 @@ "plasmid_name": "pMuLE ENTR U6 n.s shRNA L1-L4", "sequence-type": "depositor-full", "addgene_id": "62136", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62136.depositor-full.gb" }, @@ -40195,7 +50640,10 @@ "plasmid_name": "pLX_HA-C7orf26v2", "sequence-type": "addgene-full", "addgene_id": "178536", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.12.005", + "https://www.ncbi.nlm.nih.gov/pubmed/35085500" + ], "kit": null, "file": "data/addgene_plasmids/178536.addgene-full.gb" }, @@ -40204,7 +50652,10 @@ "plasmid_name": "pDONR223_SPP1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82981", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82981.addgene-full.gb" }, @@ -40213,7 +50664,10 @@ "plasmid_name": "pDONR221-MFSD2A_STOP", "sequence-type": "addgene-full", "addgene_id": "161059", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161059.addgene-full.gb" }, @@ -40222,7 +50676,10 @@ "plasmid_name": "JC101: pMVP/Ad/PK-DEST", "sequence-type": "addgene-full", "addgene_id": "121845", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121845.addgene-full.gb" }, @@ -40231,7 +50688,6 @@ "plasmid_name": "R777-E177 Hs.PIK3R4", "sequence-type": "depositor-full", "addgene_id": "70461", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -40243,7 +50699,10 @@ "plasmid_name": "pGWB12_TtNAM-B1", "sequence-type": "addgene-full", "addgene_id": "124573", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "file": "data/addgene_plasmids/124573.addgene-full.gb" }, @@ -40252,7 +50711,10 @@ "plasmid_name": "pDONR223_SYCP1_WT", "sequence-type": "addgene-full", "addgene_id": "81828", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -40264,7 +50726,10 @@ "plasmid_name": "pCZGY2141", "sequence-type": "addgene-full", "addgene_id": "87757", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/87757.addgene-full.gb" }, @@ -40285,7 +50750,10 @@ "plasmid_name": "pUBQ10:LYK5_TM-3xHA", "sequence-type": "addgene-full", "addgene_id": "202191", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "file": "data/addgene_plasmids/202191.addgene-full.gb" }, @@ -40294,7 +50762,10 @@ "plasmid_name": "pMOS017E: Entry vector for: ratiometric pHluorin (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163069", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163069.addgene-full.gb" }, @@ -40303,7 +50774,10 @@ "plasmid_name": "p16 nlsGPS1-NR", "sequence-type": "addgene-full", "addgene_id": "101082", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-017-0021-9", + "https://www.ncbi.nlm.nih.gov/pubmed/28970478" + ], "kit": null, "file": "data/addgene_plasmids/101082.addgene-full.gb" }, @@ -40312,7 +50786,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 ORF7A_nostop", "sequence-type": "addgene-full", "addgene_id": "149324", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149324.addgene-full.gb" }, @@ -40321,7 +50798,10 @@ "plasmid_name": "pHAGE-BRAF-A320T", "sequence-type": "addgene-full", "addgene_id": "116128", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116128.addgene-full.gb" }, @@ -40330,7 +50810,10 @@ "plasmid_name": "TFORF3057", "sequence-type": "addgene-full", "addgene_id": "144533", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144533.addgene-full.gb" }, @@ -40339,7 +50822,10 @@ "plasmid_name": "pAM90", "sequence-type": "addgene-full", "addgene_id": "226682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226682.addgene-full.gb" }, @@ -40348,7 +50834,10 @@ "plasmid_name": "pK7WGF2::hCas9", "sequence-type": "depositor-full", "addgene_id": "46965", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt.2655", + "https://www.ncbi.nlm.nih.gov/pubmed/23929340" + ], "kit": null, "file": "data/addgene_plasmids/46965.depositor-full.gb" }, @@ -40357,7 +50846,10 @@ "plasmid_name": "CIR1", "sequence-type": "addgene-full", "addgene_id": "155452", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155452.addgene-full.gb" }, @@ -40366,7 +50858,10 @@ "plasmid_name": "pEZYHb", "sequence-type": "depositor-full", "addgene_id": "18669", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18669.depositor-full.gb" }, @@ -40375,7 +50870,9 @@ "plasmid_name": "pGWB402SC", "sequence-type": "addgene-full", "addgene_id": "224552", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.14.603419" + ], "kit": null, "file": "data/addgene_plasmids/224552.addgene-full.gb" }, @@ -40384,7 +50881,10 @@ "plasmid_name": "pEN_TTmiRC2_p53DD", "sequence-type": "addgene-full", "addgene_id": "136520", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136520.addgene-full.gb" }, @@ -40393,7 +50893,10 @@ "plasmid_name": "pDONR221-SLC48A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161322", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161322.addgene-full.gb" }, @@ -40402,7 +50905,10 @@ "plasmid_name": "FoRC.PRa", "sequence-type": "addgene-full", "addgene_id": "84585", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22984", + "https://www.ncbi.nlm.nih.gov/pubmed/27696669" + ], "kit": null, "file": "data/addgene_plasmids/84585.addgene-full.gb" }, @@ -40411,7 +50917,10 @@ "plasmid_name": "pDONR223_BRAF_p.G466A", "sequence-type": "addgene-full", "addgene_id": "81707", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -40423,7 +50932,10 @@ "plasmid_name": "pLX304-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176288", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "file": "data/addgene_plasmids/176288.addgene-full.gb" }, @@ -40432,7 +50944,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway", "sequence-type": "depositor-full", "addgene_id": "37846", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.133546.111", + "https://www.ncbi.nlm.nih.gov/pubmed/22442009" + ], "kit": null, "file": "data/addgene_plasmids/37846.depositor-full.gb" }, @@ -40441,7 +50956,6 @@ "plasmid_name": "pENTR-ABCC1_K684I_STOP", "sequence-type": "addgene-full", "addgene_id": "221430", - "references": [], "kit": null, "file": "data/addgene_plasmids/221430.addgene-full.gb" }, @@ -40450,7 +50964,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir16-1.3", "sequence-type": "depositor-full", "addgene_id": "46682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46682.depositor-full.gb" }, @@ -40459,7 +50976,9 @@ "plasmid_name": "pDONR221-MRPS18b", "sequence-type": "addgene-full", "addgene_id": "166190", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166190.addgene-full.gb" }, @@ -40468,7 +50987,10 @@ "plasmid_name": "TFORF3491", "sequence-type": "addgene-full", "addgene_id": "144967", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144967.addgene-full.gb" }, @@ -40477,7 +50999,10 @@ "plasmid_name": "pHAGE-EGFR-G719A", "sequence-type": "addgene-full", "addgene_id": "116253", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116253.addgene-full.gb" }, @@ -40486,7 +51011,10 @@ "plasmid_name": "pHAGE-TBK1-C-FLAG-HA", "sequence-type": "addgene-full", "addgene_id": "131792", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.08.085", + "https://www.ncbi.nlm.nih.gov/pubmed/31577952" + ], "kit": null, "file": "data/addgene_plasmids/131792.addgene-full.gb" }, @@ -40495,7 +51023,10 @@ "plasmid_name": "p8220 MSCV-Neo C-HA 18E7 R84S", "sequence-type": "addgene-full", "addgene_id": "163312", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "file": "data/addgene_plasmids/163312.addgene-full.gb" }, @@ -40504,7 +51035,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP14_stop", "sequence-type": "addgene-full", "addgene_id": "168555", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168555.addgene-full.gb" }, @@ -40513,7 +51047,10 @@ "plasmid_name": "pAFMW-Nbr[C399-625 CM]", "sequence-type": "addgene-full", "addgene_id": "188588", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188588.addgene-full.gb" }, @@ -40522,7 +51059,6 @@ "plasmid_name": "R777-E271 Hs.RB1", "sequence-type": "depositor-full", "addgene_id": "70555", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -40534,7 +51070,10 @@ "plasmid_name": "pDONR223-PFKFB3", "sequence-type": "addgene-full", "addgene_id": "23668", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -40546,7 +51085,10 @@ "plasmid_name": "pHAGE-PIK3CA-E542K", "sequence-type": "addgene-full", "addgene_id": "116479", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116479.addgene-full.gb" }, @@ -40555,7 +51097,9 @@ "plasmid_name": "pMpGWB416", "sequence-type": "depositor-full", "addgene_id": "68681", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68681.depositor-full.gb" }, @@ -40564,7 +51108,10 @@ "plasmid_name": "pDONR223_MYC_WT", "sequence-type": "addgene-full", "addgene_id": "82084", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -40576,7 +51123,10 @@ "plasmid_name": "pGGEV_6_Linker", "sequence-type": "depositor-full", "addgene_id": "49286", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -40588,7 +51138,10 @@ "plasmid_name": "TU#1412_tiam-1_cDNA", "sequence-type": "addgene-full", "addgene_id": "82364", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1607179113", + "https://www.ncbi.nlm.nih.gov/pubmed/27274054" + ], "kit": null, "file": "data/addgene_plasmids/82364.addgene-full.gb" }, @@ -40597,7 +51150,10 @@ "plasmid_name": "pYN2_1", "sequence-type": "addgene-full", "addgene_id": "184757", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-71648-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32884066" + ], "kit": null, "file": "data/addgene_plasmids/184757.addgene-full.gb" }, @@ -40606,7 +51162,10 @@ "plasmid_name": "pVL-FLAG/His PALI1", "sequence-type": "addgene-full", "addgene_id": "114449", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "file": "data/addgene_plasmids/114449.addgene-full.gb" }, @@ -40615,7 +51174,10 @@ "plasmid_name": "pCK069 desmaMCS:minprom_mApple,exorh:EGFP", "sequence-type": "addgene-full", "addgene_id": "195982", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195982.addgene-full.gb" }, @@ -40624,7 +51186,10 @@ "plasmid_name": "pHAGE-TGFB1", "sequence-type": "addgene-full", "addgene_id": "116799", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116799.addgene-full.gb" }, @@ -40633,7 +51198,10 @@ "plasmid_name": "pCW-Flag-CtIP", "sequence-type": "addgene-full", "addgene_id": "71108", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71108.addgene-full.gb" }, @@ -40642,7 +51210,10 @@ "plasmid_name": "pENTR221-NFAT5", "sequence-type": "addgene-full", "addgene_id": "79506", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79506.addgene-full.gb" }, @@ -40651,7 +51222,10 @@ "plasmid_name": "pDONR221_SLC22A15", "sequence-type": "addgene-full", "addgene_id": "132011", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132011.addgene-full.gb" }, @@ -40660,7 +51234,10 @@ "plasmid_name": "pHAGE-TGFBR2-R528S", "sequence-type": "addgene-full", "addgene_id": "116702", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116702.addgene-full.gb" }, @@ -40669,7 +51246,10 @@ "plasmid_name": "pFUSE-B_P2rP4", "sequence-type": "addgene-full", "addgene_id": "97185", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-2745", + "https://www.ncbi.nlm.nih.gov/pubmed/28512244" + ], "kit": null, "file": "data/addgene_plasmids/97185.addgene-full.gb" }, @@ -40678,7 +51258,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term NPAT", "sequence-type": "addgene-full", "addgene_id": "187585", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187585.addgene-full.gb" }, @@ -40687,7 +51270,10 @@ "plasmid_name": "pDONR221-ZNF66", "sequence-type": "depositor-full", "addgene_id": "101502", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101502.depositor-full.gb" }, @@ -40696,7 +51282,6 @@ "plasmid_name": "p667-UBC-hcRed-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135238", - "references": [], "kit": null, "file": "data/addgene_plasmids/135238.addgene-full.gb" }, @@ -40705,7 +51290,6 @@ "plasmid_name": "IDG_GABRG1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161673", - "references": [], "kit": null, "file": "data/addgene_plasmids/161673.addgene-full.gb" }, @@ -40714,7 +51298,10 @@ "plasmid_name": "pDONR223_NFKBIA_WT", "sequence-type": "addgene-full", "addgene_id": "81256", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81256.addgene-full.gb" }, @@ -40723,7 +51310,10 @@ "plasmid_name": "pDONR221 Nop4", "sequence-type": "depositor-full", "addgene_id": "63767", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63767.depositor-full.gb" }, @@ -40732,7 +51322,10 @@ "plasmid_name": "pENTR223-BALF1", "sequence-type": "addgene-full", "addgene_id": "195779", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195779.addgene-full.gb" }, @@ -40741,7 +51334,10 @@ "plasmid_name": "pDONR201-Eps8L2_367-496", "sequence-type": "addgene-full", "addgene_id": "196530", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196530.addgene-full.gb" }, @@ -40750,7 +51346,10 @@ "plasmid_name": "pDONR221-SV2B_STOP", "sequence-type": "addgene-full", "addgene_id": "161447", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161447.addgene-full.gb" }, @@ -40759,7 +51358,10 @@ "plasmid_name": "pENTR4 CDS A. thaliana PARP2", "sequence-type": "addgene-full", "addgene_id": "175810", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2018.01581", + "https://www.ncbi.nlm.nih.gov/pubmed/30455710" + ], "kit": null, "file": "data/addgene_plasmids/175810.addgene-full.gb" }, @@ -40768,7 +51370,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(K206A)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128678", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128678.addgene-full.gb" }, @@ -40777,7 +51382,10 @@ "plasmid_name": "pLenti myc-NL-GW", "sequence-type": "addgene-full", "addgene_id": "113454", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113454.addgene-full.gb" }, @@ -40786,7 +51394,10 @@ "plasmid_name": "pHAGE-PIK3CA-R38H", "sequence-type": "addgene-full", "addgene_id": "116536", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116536.addgene-full.gb" }, @@ -40795,7 +51406,10 @@ "plasmid_name": "pHAGE EF1\u03b1 dCas9-KRAB", "sequence-type": "addgene-full", "addgene_id": "50919", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.103341", + "https://www.ncbi.nlm.nih.gov/pubmed/24346702" + ], "kit": null, "file": "data/addgene_plasmids/50919.addgene-full.gb" }, @@ -40804,7 +51418,10 @@ "plasmid_name": "pDONR223-PDGFRB", "sequence-type": "addgene-full", "addgene_id": "23893", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -40816,7 +51433,10 @@ "plasmid_name": "pDONR223_C20orf72_p.P102S", "sequence-type": "addgene-full", "addgene_id": "81382", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -40828,7 +51448,10 @@ "plasmid_name": "pDONR221-W279A-short-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "195402", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/195402.addgene-full.gb" }, @@ -40837,7 +51460,10 @@ "plasmid_name": "pEnt L1L3 tTA-3", "sequence-type": "depositor-full", "addgene_id": "27105", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "file": "data/addgene_plasmids/27105.depositor-full.gb" }, @@ -40846,7 +51472,10 @@ "plasmid_name": "pTORGm43GW", "sequence-type": "addgene-full", "addgene_id": "112902", - "references": [], + "references": [ + "https://doi.org/10.1186/s12866-019-1642-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31775609" + ], "kit": null, "file": "data/addgene_plasmids/112902.addgene-full.gb" }, @@ -40855,7 +51484,10 @@ "plasmid_name": "pDest-676 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161888", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -40867,7 +51499,10 @@ "plasmid_name": "pDONR223_NRAS_WT", "sequence-type": "addgene-full", "addgene_id": "82150", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82150.addgene-full.gb" }, @@ -40876,7 +51511,10 @@ "plasmid_name": "pDONR223_HRAS_p.Q61K", "sequence-type": "addgene-full", "addgene_id": "81319", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -40888,7 +51526,10 @@ "plasmid_name": "pENTR-E2F1", "sequence-type": "depositor-full", "addgene_id": "37141", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2008.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19081076" + ], "kit": null, "file": "data/addgene_plasmids/37141.depositor-full.gb" }, @@ -40897,7 +51538,10 @@ "plasmid_name": "pUBQ10-moxMaple-GW", "sequence-type": "addgene-full", "addgene_id": "209353", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209353.addgene-full.gb" }, @@ -40906,7 +51550,10 @@ "plasmid_name": "pDONR221_SLC40A1", "sequence-type": "addgene-full", "addgene_id": "132225", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132225.addgene-full.gb" }, @@ -40915,7 +51562,10 @@ "plasmid_name": "AAEL017313 GPCR", "sequence-type": "addgene-full", "addgene_id": "115404", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115404.addgene-full.gb" }, @@ -40924,7 +51574,10 @@ "plasmid_name": "pPB-cT3G-cERP2-YBX1", "sequence-type": "addgene-full", "addgene_id": "192904", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192904.addgene-full.gb" }, @@ -40933,7 +51586,10 @@ "plasmid_name": "C413-E21: attB4-PGKp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162921", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -40945,7 +51601,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 1-376)", "sequence-type": "addgene-full", "addgene_id": "119311", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119311.addgene-full.gb" }, @@ -40954,7 +51613,10 @@ "plasmid_name": "pKH145_mCherry-YIPF4 LIR mut", "sequence-type": "addgene-full", "addgene_id": "214973", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "file": "data/addgene_plasmids/214973.addgene-full.gb" }, @@ -40963,7 +51625,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS2B", "sequence-type": "addgene-full", "addgene_id": "145354", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145354.addgene-full.gb" }, @@ -40972,7 +51637,10 @@ "plasmid_name": "pENTR1A-FKBP12DD C-term (w350-2)", "sequence-type": "depositor-full", "addgene_id": "17413", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17413.depositor-full.gb" }, @@ -40981,7 +51649,10 @@ "plasmid_name": "mEos3-caRac1", "sequence-type": "addgene-full", "addgene_id": "92041", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1409667112", + "https://www.ncbi.nlm.nih.gov/pubmed/25561548" + ], "kit": null, "file": "data/addgene_plasmids/92041.addgene-full.gb" }, @@ -40990,7 +51661,10 @@ "plasmid_name": "pHAGE-NRAS-Q61K", "sequence-type": "addgene-full", "addgene_id": "116444", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116444.addgene-full.gb" }, @@ -40999,7 +51673,10 @@ "plasmid_name": "pDONR223-PAK2", "sequence-type": "addgene-full", "addgene_id": "23655", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -41011,7 +51688,10 @@ "plasmid_name": "pAG303GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14302", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -41023,7 +51703,10 @@ "plasmid_name": "pSico-CAG-v-H-Ras-IRES-Luciferase/EGFP", "sequence-type": "depositor-full", "addgene_id": "58959", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2013.03.013", + "https://www.ncbi.nlm.nih.gov/pubmed/23523670" + ], "kit": null, "file": "data/addgene_plasmids/58959.depositor-full.gb" }, @@ -41032,7 +51715,6 @@ "plasmid_name": "pENTR CMVie-Lifeact-mCardinal L1-R5", "sequence-type": "addgene-full", "addgene_id": "84392", - "references": [], "kit": null, "file": "data/addgene_plasmids/84392.addgene-full.gb" }, @@ -41041,7 +51723,10 @@ "plasmid_name": "pENTR/pSM2(CMV) (w57-1)", "sequence-type": "depositor-full", "addgene_id": "17389", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17389.depositor-full.gb" }, @@ -41050,7 +51735,10 @@ "plasmid_name": "R989-X30-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) G13D", "sequence-type": "addgene-full", "addgene_id": "159550", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159550.addgene-full.gb" }, @@ -41059,7 +51747,10 @@ "plasmid_name": "pGL193", "sequence-type": "addgene-full", "addgene_id": "180471", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13754", + "https://www.ncbi.nlm.nih.gov/pubmed/34837319" + ], "kit": null, "file": "data/addgene_plasmids/180471.addgene-full.gb" }, @@ -41068,7 +51759,10 @@ "plasmid_name": "pHAGE-CDC42BPB__RGS6", "sequence-type": "addgene-full", "addgene_id": "116810", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116810.addgene-full.gb" }, @@ -41077,7 +51771,9 @@ "plasmid_name": "pMpGWB207", "sequence-type": "depositor-full", "addgene_id": "68598", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68598.depositor-full.gb" }, @@ -41086,7 +51782,10 @@ "plasmid_name": "pUCIDT-attL1-Worm ABeta-attR5", "sequence-type": "addgene-full", "addgene_id": "160437", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.3856", + "https://www.ncbi.nlm.nih.gov/pubmed/33659494" + ], "kit": null, "file": "data/addgene_plasmids/160437.addgene-full.gb" }, @@ -41095,7 +51794,10 @@ "plasmid_name": "pINDUCER dCas9-TET1CD", "sequence-type": "addgene-full", "addgene_id": "101921", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-017-0002-y", + "https://www.ncbi.nlm.nih.gov/pubmed/29203910" + ], "kit": null, "file": "data/addgene_plasmids/101921.addgene-full.gb" }, @@ -41104,7 +51806,6 @@ "plasmid_name": "pLEX307-DPP4-blast", "sequence-type": "addgene-full", "addgene_id": "158452", - "references": [], "kit": null, "file": "data/addgene_plasmids/158452.addgene-full.gb" }, @@ -41113,7 +51814,6 @@ "plasmid_name": "p663-UBC-PM-TurboID-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214455", - "references": [], "kit": null, "file": "data/addgene_plasmids/214455.addgene-full.gb" }, @@ -41122,7 +51822,10 @@ "plasmid_name": "pRU205", "sequence-type": "addgene-full", "addgene_id": "167685", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167685.addgene-full.gb" }, @@ -41131,7 +51834,6 @@ "plasmid_name": "pME tdTomato-NLS", "sequence-type": "addgene-full", "addgene_id": "135205", - "references": [], "kit": null, "file": "data/addgene_plasmids/135205.addgene-full.gb" }, @@ -41140,7 +51842,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-34", "sequence-type": "depositor-full", "addgene_id": "46652", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46652.depositor-full.gb" }, @@ -41149,7 +51854,10 @@ "plasmid_name": "pZmUBQ:AVRa1-V1", "sequence-type": "addgene-full", "addgene_id": "132357", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0502-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31666804" + ], "kit": null, "file": "data/addgene_plasmids/132357.addgene-full.gb" }, @@ -41158,7 +51866,10 @@ "plasmid_name": "pWZL Neo Myr Flag FGR", "sequence-type": "addgene-full", "addgene_id": "20487", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20487.addgene-full.gb" }, @@ -41167,7 +51878,10 @@ "plasmid_name": "pCAG/ATP11C-b-HA", "sequence-type": "addgene-full", "addgene_id": "209221", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258523", + "https://www.ncbi.nlm.nih.gov/pubmed/34528675" + ], "kit": null, "file": "data/addgene_plasmids/209221.addgene-full.gb" }, @@ -41176,7 +51890,10 @@ "plasmid_name": "Flag-HA-UCHL1", "sequence-type": "addgene-full", "addgene_id": "22563", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22563.addgene-full.gb" }, @@ -41185,7 +51902,10 @@ "plasmid_name": "PB-TA-ERN", "sequence-type": "depositor-full", "addgene_id": "80474", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "file": "data/addgene_plasmids/80474.depositor-full.gb" }, @@ -41194,7 +51914,10 @@ "plasmid_name": "pLenti PGK mKate2-OGT 5N5A (Puro)", "sequence-type": "addgene-full", "addgene_id": "154293", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154293.addgene-full.gb" }, @@ -41203,7 +51926,10 @@ "plasmid_name": "pCW57.1 KBTBD4 P311PP", "sequence-type": "addgene-full", "addgene_id": "184625", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-022-00983-4", + "https://www.ncbi.nlm.nih.gov/pubmed/35379950" + ], "kit": null, "file": "data/addgene_plasmids/184625.addgene-full.gb" }, @@ -41212,7 +51938,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0533-luc2", "sequence-type": "addgene-full", "addgene_id": "214661", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214661.addgene-full.gb" }, @@ -41221,7 +51950,10 @@ "plasmid_name": "pDONR223_SMAD4_WT", "sequence-type": "addgene-full", "addgene_id": "82216", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82216.addgene-full.gb" }, @@ -41230,7 +51962,9 @@ "plasmid_name": "Shim_ThrRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202652", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "file": "data/addgene_plasmids/202652.addgene-full.gb" }, @@ -41239,7 +51973,10 @@ "plasmid_name": "TRIM33-GFP", "sequence-type": "addgene-full", "addgene_id": "65399", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65399.addgene-full.gb" }, @@ -41248,7 +51985,10 @@ "plasmid_name": "pGWB512", "sequence-type": "depositor-full", "addgene_id": "74854", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74854.depositor-full.gb" }, @@ -41257,7 +51997,10 @@ "plasmid_name": "pDONR221_SLC9A5", "sequence-type": "addgene-full", "addgene_id": "132163", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132163.addgene-full.gb" }, @@ -41266,7 +52009,10 @@ "plasmid_name": "pSGE_575_Ubi-2-Trl_dCP", "sequence-type": "depositor-full", "addgene_id": "71167", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71167.depositor-full.gb" }, @@ -41275,7 +52021,10 @@ "plasmid_name": "pDONR221_SLC27A4", "sequence-type": "addgene-full", "addgene_id": "132283", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132283.addgene-full.gb" }, @@ -41284,7 +52033,10 @@ "plasmid_name": "pENTR L3-4XeGFP-Myc-L2", "sequence-type": "depositor-full", "addgene_id": "32316", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32316.depositor-full.gb" }, @@ -41293,7 +52045,10 @@ "plasmid_name": "WDR4_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176984", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176984.addgene-full.gb" }, @@ -41302,7 +52057,6 @@ "plasmid_name": "R777-E081 Hs.EXOC8", "sequence-type": "depositor-full", "addgene_id": "70365", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -41314,7 +52068,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF7b", "sequence-type": "addgene-full", "addgene_id": "169394", - "references": [], "kit": null, "file": "data/addgene_plasmids/169394.addgene-full.gb" }, @@ -41323,7 +52076,10 @@ "plasmid_name": "pAM-PAT-ProGL2 GW", "sequence-type": "depositor-full", "addgene_id": "80689", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.104.030486", + "https://www.ncbi.nlm.nih.gov/pubmed/15749764" + ], "kit": null, "file": "data/addgene_plasmids/80689.depositor-full.gb" }, @@ -41332,7 +52088,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_F65A", "sequence-type": "depositor-full", "addgene_id": "65092", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65092.depositor-full.gb" }, @@ -41341,7 +52100,10 @@ "plasmid_name": "pDONR223_OR2T33_p.W49L", "sequence-type": "addgene-full", "addgene_id": "81324", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -41353,7 +52115,6 @@ "plasmid_name": "IDG_KCNH4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161701", - "references": [], "kit": null, "file": "data/addgene_plasmids/161701.addgene-full.gb" }, @@ -41362,7 +52123,10 @@ "plasmid_name": "pDONR223-ADRBK1", "sequence-type": "addgene-full", "addgene_id": "23835", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -41374,7 +52138,10 @@ "plasmid_name": "pDONR221_SLC5A8", "sequence-type": "addgene-full", "addgene_id": "132218", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132218.addgene-full.gb" }, @@ -41383,7 +52150,10 @@ "plasmid_name": "pHAGE-PIK3R1-F646S", "sequence-type": "addgene-full", "addgene_id": "116590", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116590.addgene-full.gb" }, @@ -41392,7 +52162,10 @@ "plasmid_name": "478 p5Efli1ep", "sequence-type": "depositor-full", "addgene_id": "31160", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/31160.depositor-full.gb" }, @@ -41401,7 +52174,10 @@ "plasmid_name": "pMuLE_ENTR_12GLI-FLuc_R4-R3", "sequence-type": "addgene-full", "addgene_id": "113712", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "file": "data/addgene_plasmids/113712.addgene-full.gb" }, @@ -41410,7 +52186,6 @@ "plasmid_name": "R777-E318 Hs.SOS1-nostop", "sequence-type": "depositor-full", "addgene_id": "70602", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -41422,7 +52197,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-As", "sequence-type": "addgene-full", "addgene_id": "86196", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "file": "data/addgene_plasmids/86196.addgene-full.gb" }, @@ -41431,7 +52209,9 @@ "plasmid_name": "pLX317-EGFP", "sequence-type": "addgene-full", "addgene_id": "115439", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "file": "data/addgene_plasmids/115439.addgene-full.gb" }, @@ -41440,7 +52220,10 @@ "plasmid_name": "pHAGE-RET-V121I", "sequence-type": "addgene-full", "addgene_id": "116670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116670.addgene-full.gb" }, @@ -41449,7 +52232,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAP G116", "sequence-type": "addgene-full", "addgene_id": "123099", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123099.addgene-full.gb" }, @@ -41458,7 +52244,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-LMTK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170580", - "references": [], "kit": null, "file": "data/addgene_plasmids/170580.addgene-full.gb" }, @@ -41467,7 +52252,10 @@ "plasmid_name": "pLenti GW V5 Eco/Dam mse EMD", "sequence-type": "addgene-full", "addgene_id": "182675", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201439789", + "https://www.ncbi.nlm.nih.gov/pubmed/25784758" + ], "kit": null, "file": "data/addgene_plasmids/182675.addgene-full.gb" }, @@ -41476,7 +52264,10 @@ "plasmid_name": "pmCellFree_KA1", "sequence-type": "addgene-full", "addgene_id": "145369", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145369.addgene-full.gb" }, @@ -41485,7 +52276,10 @@ "plasmid_name": "pGL2208", "sequence-type": "addgene-full", "addgene_id": "137049", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-9210-2_10", + "https://www.ncbi.nlm.nih.gov/pubmed/30980305" + ], "kit": null, "file": "data/addgene_plasmids/137049.addgene-full.gb" }, @@ -41494,7 +52288,6 @@ "plasmid_name": "CTNNB1 - R376H in pENTR", "sequence-type": "addgene-full", "addgene_id": "216619", - "references": [], "kit": null, "file": "data/addgene_plasmids/216619.addgene-full.gb" }, @@ -41503,7 +52296,10 @@ "plasmid_name": "pHAGE-PIK3CA-T1025A", "sequence-type": "addgene-full", "addgene_id": "116543", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116543.addgene-full.gb" }, @@ -41512,7 +52308,10 @@ "plasmid_name": "TFORF3522", "sequence-type": "depositor-full", "addgene_id": "144998", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144998.depositor-full.gb" }, @@ -41521,7 +52320,10 @@ "plasmid_name": "pMDJ17 - pEXP[Peft-3 | dendra2 (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159803", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159803.addgene-full.gb" }, @@ -41530,7 +52332,6 @@ "plasmid_name": "pAG416GAL10-DUGV_OTU", "sequence-type": "addgene-full", "addgene_id": "203463", - "references": [], "kit": null, "file": "data/addgene_plasmids/203463.addgene-full.gb" }, @@ -41539,7 +52340,10 @@ "plasmid_name": "pDONR221-SLC25A23_STOP", "sequence-type": "depositor-full", "addgene_id": "161134", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161134.depositor-full.gb" }, @@ -41560,7 +52364,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0402-luc2", "sequence-type": "addgene-full", "addgene_id": "214629", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214629.addgene-full.gb" }, @@ -41569,7 +52376,10 @@ "plasmid_name": "pENTR_L1-YFP-miniTurbo-NES-L2", "sequence-type": "addgene-full", "addgene_id": "127351", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127351.addgene-full.gb" }, @@ -41578,7 +52388,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS6", "sequence-type": "depositor-full", "addgene_id": "20245", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20245.depositor-full.gb" }, @@ -41587,7 +52400,6 @@ "plasmid_name": "pET-53-RtcA", "sequence-type": "addgene-full", "addgene_id": "107876", - "references": [], "kit": null, "file": "data/addgene_plasmids/107876.addgene-full.gb" }, @@ -41596,7 +52408,10 @@ "plasmid_name": "pEAHISPSVORF165A", "sequence-type": "addgene-full", "addgene_id": "97024", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97024.addgene-full.gb" }, @@ -41605,7 +52420,10 @@ "plasmid_name": "pHAGE-PTEN-Y336*", "sequence-type": "addgene-full", "addgene_id": "116638", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116638.addgene-full.gb" }, @@ -41614,7 +52432,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-Hygro", "sequence-type": "addgene-full", "addgene_id": "158555", - "references": [], "kit": null, "file": "data/addgene_plasmids/158555.addgene-full.gb" }, @@ -41623,7 +52440,10 @@ "plasmid_name": "pENTR223-BILF1", "sequence-type": "addgene-full", "addgene_id": "195797", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195797.addgene-full.gb" }, @@ -41632,7 +52452,10 @@ "plasmid_name": "C514-E12: attB5r-RU5u-His6-eGFP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162954", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -41644,7 +52467,10 @@ "plasmid_name": "pCfB13090", "sequence-type": "addgene-full", "addgene_id": "212679", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymben.2024.09.003", + "https://www.ncbi.nlm.nih.gov/pubmed/39260817" + ], "kit": null, "file": "data/addgene_plasmids/212679.addgene-full.gb" }, @@ -41653,7 +52479,6 @@ "plasmid_name": "pPV476", "sequence-type": "depositor-full", "addgene_id": "42929", - "references": [], "kit": null, "file": "data/addgene_plasmids/42929.depositor-full.gb" }, @@ -41662,7 +52487,10 @@ "plasmid_name": "pENTR223-BVRF2", "sequence-type": "addgene-full", "addgene_id": "195823", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195823.addgene-full.gb" }, @@ -41671,7 +52499,10 @@ "plasmid_name": "RRP1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176957", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176957.addgene-full.gb" }, @@ -41680,7 +52511,10 @@ "plasmid_name": "pInducer 21-3xFlag-hMEFV-F479L", "sequence-type": "addgene-full", "addgene_id": "195477", - "references": [], + "references": [ + "https://doi.org/10.1038/s41419-023-05745-9", + "https://www.ncbi.nlm.nih.gov/pubmed/36966139" + ], "kit": null, "file": "data/addgene_plasmids/195477.addgene-full.gb" }, @@ -41689,7 +52523,9 @@ "plasmid_name": "pMpGWB320", "sequence-type": "depositor-full", "addgene_id": "68648", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68648.depositor-full.gb" }, @@ -41698,7 +52534,10 @@ "plasmid_name": "pILL5-NLS-3xmCitrine", "sequence-type": "addgene-full", "addgene_id": "192525", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.112676", + "https://www.ncbi.nlm.nih.gov/pubmed/37342910" + ], "kit": null, "file": "data/addgene_plasmids/192525.addgene-full.gb" }, @@ -41707,7 +52546,10 @@ "plasmid_name": "NCH2exp", "sequence-type": "addgene-full", "addgene_id": "131019", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "file": "data/addgene_plasmids/131019.addgene-full.gb" }, @@ -41716,7 +52558,10 @@ "plasmid_name": "pDONR221_SVOPL", "sequence-type": "addgene-full", "addgene_id": "132250", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132250.addgene-full.gb" }, @@ -41725,7 +52570,6 @@ "plasmid_name": "pAMW-Wnk", "sequence-type": "addgene-full", "addgene_id": "203978", - "references": [], "kit": null, "file": "data/addgene_plasmids/203978.addgene-full.gb" }, @@ -41734,7 +52578,10 @@ "plasmid_name": "pDONR223_PRKACA_WT", "sequence-type": "addgene-full", "addgene_id": "82311", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82311.addgene-full.gb" }, @@ -41743,7 +52590,10 @@ "plasmid_name": "pLX304 PRDM14", "sequence-type": "addgene-full", "addgene_id": "193688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193688.addgene-full.gb" }, @@ -41752,7 +52602,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL2 G116", "sequence-type": "addgene-full", "addgene_id": "123105", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123105.addgene-full.gb" }, @@ -41761,7 +52614,10 @@ "plasmid_name": "GRB2-SHC", "sequence-type": "addgene-full", "addgene_id": "139623", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139623.addgene-full.gb" }, @@ -41770,7 +52626,10 @@ "plasmid_name": "pZA3", "sequence-type": "addgene-full", "addgene_id": "158481", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158481.addgene-full.gb" }, @@ -41779,7 +52638,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir193b-1", "sequence-type": "depositor-full", "addgene_id": "46731", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46731.depositor-full.gb" }, @@ -41788,7 +52650,10 @@ "plasmid_name": "pDONR221_SLC35A1", "sequence-type": "addgene-full", "addgene_id": "132064", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132064.addgene-full.gb" }, @@ -41797,7 +52662,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp6", "sequence-type": "depositor-full", "addgene_id": "168895", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168895.depositor-full.gb" }, @@ -41806,7 +52674,10 @@ "plasmid_name": "pENTR-R4R3-3xmEGFP-N", "sequence-type": "depositor-full", "addgene_id": "113748", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -41818,7 +52689,10 @@ "plasmid_name": "PE_29: Prhl_lac_tet_eG::sfYFP", "sequence-type": "addgene-full", "addgene_id": "104890", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104890.addgene-full.gb" }, @@ -41827,7 +52701,10 @@ "plasmid_name": "MSCV-CMV-DsRed-IRES-d1EGFP", "sequence-type": "addgene-full", "addgene_id": "41942", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1160489", + "https://www.ncbi.nlm.nih.gov/pubmed/18988847" + ], "kit": null, "file": "data/addgene_plasmids/41942.addgene-full.gb" }, @@ -41836,7 +52713,10 @@ "plasmid_name": "mTALEAD ATP6-2-1", "sequence-type": "addgene-full", "addgene_id": "210829", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "file": "data/addgene_plasmids/210829.addgene-full.gb" }, @@ -41845,7 +52725,10 @@ "plasmid_name": "pAG426GPD-EGFP-ccdB", "sequence-type": "addgene-full", "addgene_id": "14324", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -41857,7 +52740,9 @@ "plasmid_name": "pEpic", "sequence-type": "depositor-full", "addgene_id": "84372", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/84372.depositor-full.gb" }, @@ -41866,7 +52751,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-GFP (gRNA: DHS-4D-2)", "sequence-type": "addgene-full", "addgene_id": "159663", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/159663.addgene-full.gb" }, @@ -41875,7 +52763,10 @@ "plasmid_name": "pDONR223-JAK1", "sequence-type": "addgene-full", "addgene_id": "23932", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -41887,7 +52778,6 @@ "plasmid_name": "pSMPUW_6.3_M1-gateway-HA", "sequence-type": "addgene-full", "addgene_id": "128439", - "references": [], "kit": null, "file": "data/addgene_plasmids/128439.addgene-full.gb" }, @@ -41896,7 +52786,6 @@ "plasmid_name": "pENTR-TetR", "sequence-type": "addgene-full", "addgene_id": "139558", - "references": [], "kit": null, "file": "data/addgene_plasmids/139558.addgene-full.gb" }, @@ -41905,7 +52794,10 @@ "plasmid_name": "pHAGE-PPP2R1A", "sequence-type": "addgene-full", "addgene_id": "116777", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116777.addgene-full.gb" }, @@ -41914,7 +52806,10 @@ "plasmid_name": "pSLIK 3xHA-MKK6-EE neo", "sequence-type": "addgene-full", "addgene_id": "47546", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2012.11.009", + "https://www.ncbi.nlm.nih.gov/pubmed/23332156" + ], "kit": null, "file": "data/addgene_plasmids/47546.addgene-full.gb" }, @@ -41923,7 +52818,10 @@ "plasmid_name": "pMuLE ENTR MCS L5-L2", "sequence-type": "depositor-full", "addgene_id": "62085", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62085.depositor-full.gb" }, @@ -41932,7 +52830,10 @@ "plasmid_name": "pAG413GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14261", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -41944,7 +52845,9 @@ "plasmid_name": "pMpGWB215", "sequence-type": "depositor-full", "addgene_id": "68606", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68606.depositor-full.gb" }, @@ -41953,7 +52856,6 @@ "plasmid_name": "STXBP1 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216624", - "references": [], "kit": null, "file": "data/addgene_plasmids/216624.addgene-full.gb" }, @@ -41962,7 +52864,10 @@ "plasmid_name": "pGW-TurboID-GOI", "sequence-type": "addgene-full", "addgene_id": "209380", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "file": "data/addgene_plasmids/209380.addgene-full.gb" }, @@ -41971,7 +52876,10 @@ "plasmid_name": "pDONR223_STAT1_p.Y701F", "sequence-type": "addgene-full", "addgene_id": "82183", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82183.addgene-full.gb" }, @@ -41980,7 +52888,6 @@ "plasmid_name": "pAG426-GAL-APP-CTF", "sequence-type": "addgene-full", "addgene_id": "181732", - "references": [], "kit": null, "file": "data/addgene_plasmids/181732.addgene-full.gb" }, @@ -41989,7 +52896,10 @@ "plasmid_name": "pNJB80", "sequence-type": "depositor-full", "addgene_id": "51518", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51518.depositor-full.gb" }, @@ -41998,7 +52908,10 @@ "plasmid_name": "pHAGE-CMV-6xHis-SUMO1", "sequence-type": "addgene-full", "addgene_id": "164939", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "file": "data/addgene_plasmids/164939.addgene-full.gb" }, @@ -42007,7 +52920,10 @@ "plasmid_name": "pcDNA3.1_Zeo_3xSH2(GRB2)-CTEV-2xHA", "sequence-type": "addgene-full", "addgene_id": "214614", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214614.addgene-full.gb" }, @@ -42016,7 +52932,10 @@ "plasmid_name": "pDONR223_TNFRSF17_WT", "sequence-type": "addgene-full", "addgene_id": "82263", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82263.addgene-full.gb" }, @@ -42025,7 +52944,10 @@ "plasmid_name": "pAG304GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14136", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -42037,7 +52959,10 @@ "plasmid_name": "pENTR223-CMV-Cre-U6-sgX-U6-sgRb1-U6-sgTrp53-U6-sgRbl2", "sequence-type": "addgene-full", "addgene_id": "209060", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-023-01210-z", + "https://www.ncbi.nlm.nih.gov/pubmed/37591951" + ], "kit": null, "file": "data/addgene_plasmids/209060.addgene-full.gb" }, @@ -42046,7 +52971,10 @@ "plasmid_name": "pDONR P2R-P3-IRES_ECFP", "sequence-type": "depositor-full", "addgene_id": "48354", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -42058,7 +52986,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-BTF3", "sequence-type": "depositor-full", "addgene_id": "38075", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38075.depositor-full.gb" }, @@ -42067,7 +52998,10 @@ "plasmid_name": "pEAHISPApqsE", "sequence-type": "addgene-full", "addgene_id": "97019", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97019.addgene-full.gb" }, @@ -42076,7 +53010,10 @@ "plasmid_name": "pDONR221_SLC27A3", "sequence-type": "addgene-full", "addgene_id": "132116", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132116.addgene-full.gb" }, @@ -42085,7 +53022,10 @@ "plasmid_name": "pDONR223 LC3B2 G120", "sequence-type": "addgene-full", "addgene_id": "123077", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123077.addgene-full.gb" }, @@ -42094,7 +53034,10 @@ "plasmid_name": "Hsp68-LacZ-Gateway", "sequence-type": "addgene-full", "addgene_id": "37843", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05295", + "https://www.ncbi.nlm.nih.gov/pubmed/17086198" + ], "kit": null, "file": "data/addgene_plasmids/37843.addgene-full.gb" }, @@ -42103,7 +53046,10 @@ "plasmid_name": "pcDNA5FRT/TO-SAKS1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113487", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113487.addgene-full.gb" }, @@ -42112,7 +53058,10 @@ "plasmid_name": "GFP-BRD3", "sequence-type": "addgene-full", "addgene_id": "65377", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65377.addgene-full.gb" }, @@ -42121,7 +53070,10 @@ "plasmid_name": "pENTR-L1-PGK-Neo-L2", "sequence-type": "addgene-full", "addgene_id": "141007", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141007.addgene-full.gb" }, @@ -42130,7 +53082,10 @@ "plasmid_name": "pDONR223-ZNF350", "sequence-type": "addgene-full", "addgene_id": "88526", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88526.addgene-full.gb" }, @@ -42139,7 +53094,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-TAOK1", "sequence-type": "addgene-full", "addgene_id": "172991", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172991.addgene-full.gb" }, @@ -42148,7 +53106,10 @@ "plasmid_name": "pHAGE-PIK3R1-S460_D464delSREYD", "sequence-type": "addgene-full", "addgene_id": "116605", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116605.addgene-full.gb" }, @@ -42157,7 +53118,10 @@ "plasmid_name": "pPHAGE_DLD-H450A-C-TAP", "sequence-type": "depositor-full", "addgene_id": "83478", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "file": "data/addgene_plasmids/83478.depositor-full.gb" }, @@ -42166,7 +53130,10 @@ "plasmid_name": "C413-E10: attB4-FerHp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162969", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -42178,7 +53145,10 @@ "plasmid_name": "pDONR223_PRR23B_p.H245Q", "sequence-type": "addgene-full", "addgene_id": "81351", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -42190,7 +53160,10 @@ "plasmid_name": "MAC_C_LTK", "sequence-type": "addgene-full", "addgene_id": "187762", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187762.addgene-full.gb" }, @@ -42199,7 +53172,10 @@ "plasmid_name": "pDONR223_ETS1_WT", "sequence-type": "addgene-full", "addgene_id": "82118", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82118.addgene-full.gb" }, @@ -42208,7 +53184,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TESK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170615", - "references": [], "kit": null, "file": "data/addgene_plasmids/170615.addgene-full.gb" }, @@ -42217,7 +53192,6 @@ "plasmid_name": "R777-E194 Hs.PRKAA2-nostop", "sequence-type": "depositor-full", "addgene_id": "70478", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -42229,7 +53203,10 @@ "plasmid_name": "pDL112", "sequence-type": "addgene-full", "addgene_id": "175917", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175917.addgene-full.gb" }, @@ -42238,7 +53215,6 @@ "plasmid_name": "pENTR_Hu_PTTG1(WT)", "sequence-type": "addgene-full", "addgene_id": "136342", - "references": [], "kit": null, "file": "data/addgene_plasmids/136342.addgene-full.gb" }, @@ -42247,7 +53223,10 @@ "plasmid_name": "MAC_N_BET1", "sequence-type": "addgene-full", "addgene_id": "111683", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111683.addgene-full.gb" }, @@ -42256,7 +53235,10 @@ "plasmid_name": "LIIIalpha F A-B", "sequence-type": "depositor-full", "addgene_id": "54382", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54382.depositor-full.gb" }, @@ -42265,7 +53247,10 @@ "plasmid_name": "pAB-EXPR(PYL-cat_dom_HDAC5)", "sequence-type": "addgene-full", "addgene_id": "114401", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114401.addgene-full.gb" }, @@ -42274,7 +53259,6 @@ "plasmid_name": "EV-D68 3C protease; aliases: Enterovirus A71 3C protease, non cleavable C-term 6xHis tag", "sequence-type": "addgene-full", "addgene_id": "204817", - "references": [], "kit": null, "file": "data/addgene_plasmids/204817.addgene-full.gb" }, @@ -42283,7 +53267,10 @@ "plasmid_name": "W118-1_Flag-hSRPK3", "sequence-type": "addgene-full", "addgene_id": "180404", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180404.addgene-full.gb" }, @@ -42292,7 +53279,10 @@ "plasmid_name": "pPB-cT3G-cERP2-EMX2", "sequence-type": "addgene-full", "addgene_id": "192898", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192898.addgene-full.gb" }, @@ -42301,7 +53291,10 @@ "plasmid_name": "pDONR221_SLC38A2", "sequence-type": "addgene-full", "addgene_id": "132059", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132059.addgene-full.gb" }, @@ -42310,7 +53303,10 @@ "plasmid_name": "pHAGE-MAP3K4-P27_P28insP", "sequence-type": "addgene-full", "addgene_id": "116431", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116431.addgene-full.gb" }, @@ -42319,7 +53315,10 @@ "plasmid_name": "1b58", "sequence-type": "addgene-full", "addgene_id": "177693", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "file": "data/addgene_plasmids/177693.addgene-full.gb" }, @@ -42328,7 +53327,10 @@ "plasmid_name": "pLEX307-mFzd4", "sequence-type": "addgene-full", "addgene_id": "102866", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "file": "data/addgene_plasmids/102866.addgene-full.gb" }, @@ -42337,7 +53339,10 @@ "plasmid_name": "MAC-CLEC4D", "sequence-type": "addgene-full", "addgene_id": "172411", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172411.addgene-full.gb" }, @@ -42346,7 +53351,10 @@ "plasmid_name": "pDONR223_TRAT1_p.E76K", "sequence-type": "addgene-full", "addgene_id": "81285", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -42358,7 +53366,6 @@ "plasmid_name": "Hs.KRAS4b Y64A", "sequence-type": "depositor-full", "addgene_id": "83151", - "references": [], "kit": null, "file": "data/addgene_plasmids/83151.depositor-full.gb" }, @@ -42367,7 +53374,10 @@ "plasmid_name": "pAG425GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14178", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -42379,7 +53389,6 @@ "plasmid_name": "pAG416GALL-ccdB-6stop", "sequence-type": "addgene-full", "addgene_id": "203511", - "references": [], "kit": null, "file": "data/addgene_plasmids/203511.addgene-full.gb" }, @@ -42388,7 +53397,10 @@ "plasmid_name": "pDEST-APLO", "sequence-type": "addgene-full", "addgene_id": "112805", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1707467114", + "https://www.ncbi.nlm.nih.gov/pubmed/28874572" + ], "kit": null, "file": "data/addgene_plasmids/112805.addgene-full.gb" }, @@ -42397,7 +53409,10 @@ "plasmid_name": "HJP-179-IVS-Syn21-NrdJ-1C-CreC-WPREw", "sequence-type": "addgene-full", "addgene_id": "162472", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162472.addgene-full.gb" }, @@ -42406,7 +53421,10 @@ "plasmid_name": "pYPQ255-x3.7", "sequence-type": "addgene-full", "addgene_id": "124311", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "file": "data/addgene_plasmids/124311.addgene-full.gb" }, @@ -42415,7 +53433,6 @@ "plasmid_name": "p663-UBC-V5-BRSK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135270", - "references": [], "kit": null, "file": "data/addgene_plasmids/135270.addgene-full.gb" }, @@ -42424,7 +53441,10 @@ "plasmid_name": "MSCV-LMP1-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "220350", - "references": [], + "references": [ + "https://doi.org/10.3389/fimmu.2023.1331730", + "https://www.ncbi.nlm.nih.gov/pubmed/38169736" + ], "kit": null, "file": "data/addgene_plasmids/220350.addgene-full.gb" }, @@ -42433,7 +53453,10 @@ "plasmid_name": "pMx/ATP8B2(E171Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209254", - "references": [], + "references": [ + "https://doi.org/10.1080/10985549.2024.2391829", + "https://www.ncbi.nlm.nih.gov/pubmed/39219493" + ], "kit": null, "file": "data/addgene_plasmids/209254.addgene-full.gb" }, @@ -42442,7 +53465,10 @@ "plasmid_name": "pTW326", "sequence-type": "addgene-full", "addgene_id": "115957", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115957.addgene-full.gb" }, @@ -42451,7 +53477,10 @@ "plasmid_name": "CMV-loxp-DsRed-loxp-eGFP", "sequence-type": "addgene-full", "addgene_id": "141148", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-12412-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31649238" + ], "kit": null, "file": "data/addgene_plasmids/141148.addgene-full.gb" }, @@ -42460,7 +53489,10 @@ "plasmid_name": "TERT - R865C", "sequence-type": "addgene-full", "addgene_id": "213926", - "references": [], + "references": [ + "https://doi.org/10.1182/blood.2021011075", + "https://www.ncbi.nlm.nih.gov/pubmed/34019641" + ], "kit": null, "file": "data/addgene_plasmids/213926.addgene-full.gb" }, @@ -42469,7 +53501,10 @@ "plasmid_name": "pCK074 p5E exorh:EGFP", "sequence-type": "addgene-full", "addgene_id": "195951", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195951.addgene-full.gb" }, @@ -42478,7 +53513,10 @@ "plasmid_name": "pMuLE ENTR CMV PuroR L5-L2", "sequence-type": "depositor-full", "addgene_id": "62161", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62161.depositor-full.gb" }, @@ -42487,7 +53525,10 @@ "plasmid_name": "pcDNA-DEST53-mTrific", "sequence-type": "depositor-full", "addgene_id": "51031", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M512755200", + "https://www.ncbi.nlm.nih.gov/pubmed/16434393" + ], "kit": null, "file": "data/addgene_plasmids/51031.depositor-full.gb" }, @@ -42496,7 +53537,6 @@ "plasmid_name": "R777-E152 Hs.PAK3-nostop", "sequence-type": "depositor-full", "addgene_id": "70436", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -42508,7 +53548,10 @@ "plasmid_name": "pAG415GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14385", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -42520,7 +53563,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PAK5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189896", - "references": [], "kit": null, "file": "data/addgene_plasmids/189896.addgene-full.gb" }, @@ -42529,7 +53571,10 @@ "plasmid_name": "pHAGE-RNF8-C403S", "sequence-type": "addgene-full", "addgene_id": "221703", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-023-01192-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37468549" + ], "kit": null, "file": "data/addgene_plasmids/221703.addgene-full.gb" }, @@ -42538,7 +53583,10 @@ "plasmid_name": "pEZYeGFP-SARS-CoV-2E stop", "sequence-type": "addgene-full", "addgene_id": "224581", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms241612793", + "https://www.ncbi.nlm.nih.gov/pubmed/37628973" + ], "kit": null, "file": "data/addgene_plasmids/224581.addgene-full.gb" }, @@ -42547,7 +53595,10 @@ "plasmid_name": "pDONR223_RNF212_WT", "sequence-type": "addgene-full", "addgene_id": "81860", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -42559,7 +53610,10 @@ "plasmid_name": "pENTR{KDRT}", "sequence-type": "addgene-full", "addgene_id": "182165", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182165.addgene-full.gb" }, @@ -42568,7 +53622,10 @@ "plasmid_name": "p7127 pHAGE-P-CMVt-N-HA-GAW-FTL", "sequence-type": "addgene-full", "addgene_id": "100153", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100153.addgene-full.gb" }, @@ -42577,7 +53634,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 E_nostop", "sequence-type": "addgene-full", "addgene_id": "168666", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168666.addgene-full.gb" }, @@ -42586,7 +53646,10 @@ "plasmid_name": "p2R3a-GUS-OcsT", "sequence-type": "depositor-full", "addgene_id": "71267", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71267.depositor-full.gb" }, @@ -42595,7 +53658,10 @@ "plasmid_name": "pAC1812_pCR8-gCasRx-CUG (control gRNA)", "sequence-type": "addgene-full", "addgene_id": "118645", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118645.addgene-full.gb" }, @@ -42604,7 +53670,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 N2_nostop", "sequence-type": "addgene-full", "addgene_id": "168586", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168586.addgene-full.gb" }, @@ -42613,7 +53682,10 @@ "plasmid_name": "p3E-rab7b", "sequence-type": "addgene-full", "addgene_id": "109724", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109724.addgene-full.gb" }, @@ -42622,7 +53694,10 @@ "plasmid_name": "TFORF3124", "sequence-type": "addgene-full", "addgene_id": "144600", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144600.addgene-full.gb" }, @@ -42631,7 +53706,9 @@ "plasmid_name": "pAG426GAL-EGFP", "sequence-type": "addgene-full", "addgene_id": "166143", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166143.addgene-full.gb" }, @@ -42640,7 +53717,10 @@ "plasmid_name": "pHAGE-EGFR-N444S", "sequence-type": "addgene-full", "addgene_id": "116280", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116280.addgene-full.gb" }, @@ -42649,7 +53729,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 N_nostop", "sequence-type": "addgene-full", "addgene_id": "152987", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/152987.addgene-full.gb" }, @@ -42658,7 +53741,10 @@ "plasmid_name": "pDONR223_COPS2_p.A317D", "sequence-type": "addgene-full", "addgene_id": "81434", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -42670,7 +53756,6 @@ "plasmid_name": "pMSCVhyg-DEST", "sequence-type": "addgene-full", "addgene_id": "119747", - "references": [], "kit": null, "file": "data/addgene_plasmids/119747.addgene-full.gb" }, @@ -42679,7 +53764,10 @@ "plasmid_name": "pDONR223_ATG3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82952", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82952.addgene-full.gb" }, @@ -42688,7 +53776,6 @@ "plasmid_name": "R777-E014 Hs.ARHGEF2-nostop", "sequence-type": "depositor-full", "addgene_id": "70298", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -42700,7 +53787,10 @@ "plasmid_name": "JE301: pMVP (L5-L4) Tir1-P2A-AID", "sequence-type": "addgene-full", "addgene_id": "121722", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121722.addgene-full.gb" }, @@ -42709,7 +53799,9 @@ "plasmid_name": "pLV_hEF1a_rtTA3", "sequence-type": "addgene-full", "addgene_id": "61472", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25403753" + ], "kit": null, "file": "data/addgene_plasmids/61472.addgene-full.gb" }, @@ -42718,7 +53810,6 @@ "plasmid_name": "R777-E229 Hs.RASA2", "sequence-type": "addgene-full", "addgene_id": "70513", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -42730,7 +53821,10 @@ "plasmid_name": "pDONR223_NKX2-4", "sequence-type": "addgene-full", "addgene_id": "221478", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221478.addgene-full.gb" }, @@ -42739,7 +53833,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDKL1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158176", - "references": [], "kit": null, "file": "data/addgene_plasmids/158176.addgene-full.gb" }, @@ -42748,7 +53841,10 @@ "plasmid_name": "pBi2FC-C-MGGAGM-P2A:mTagBFP2", "sequence-type": "addgene-full", "addgene_id": "216141", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216141.addgene-full.gb" }, @@ -42757,7 +53853,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp12", "sequence-type": "addgene-full", "addgene_id": "168949", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168949.addgene-full.gb" }, @@ -42766,7 +53865,6 @@ "plasmid_name": "R777-E218 Hs.RALB-nostop", "sequence-type": "depositor-full", "addgene_id": "70502", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -42778,7 +53876,10 @@ "plasmid_name": "pD40-His/V5-c-Myc", "sequence-type": "depositor-full", "addgene_id": "45597", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb1110", + "https://www.ncbi.nlm.nih.gov/pubmed/15048125" + ], "kit": null, "file": "data/addgene_plasmids/45597.depositor-full.gb" }, @@ -42787,7 +53888,10 @@ "plasmid_name": "pMMK ENTR 4 CMV GST mTagBFP", "sequence-type": "addgene-full", "addgene_id": "206259", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206259.addgene-full.gb" }, @@ -42796,7 +53900,10 @@ "plasmid_name": "pENTR4_ELAVL1", "sequence-type": "addgene-full", "addgene_id": "106103", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106103.addgene-full.gb" }, @@ -42805,7 +53912,10 @@ "plasmid_name": "pSLIK BirA* zeo", "sequence-type": "addgene-full", "addgene_id": "192332", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192332.addgene-full.gb" }, @@ -42814,7 +53924,10 @@ "plasmid_name": "pLD-puro-Cc-PARK7E163K-VA", "sequence-type": "addgene-full", "addgene_id": "115186", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115186.addgene-full.gb" }, @@ -42823,7 +53936,10 @@ "plasmid_name": "pDONR223_RARA_WT", "sequence-type": "addgene-full", "addgene_id": "82886", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82886.addgene-full.gb" }, @@ -42832,7 +53948,10 @@ "plasmid_name": "pDONR223_MAX_p.R35L", "sequence-type": "addgene-full", "addgene_id": "82732", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -42844,7 +53963,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_UIM-mut", "sequence-type": "addgene-full", "addgene_id": "187148", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187148.addgene-full.gb" }, @@ -42853,7 +53975,10 @@ "plasmid_name": "pDONR-IAA19", "sequence-type": "depositor-full", "addgene_id": "83856", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83856.depositor-full.gb" }, @@ -42862,7 +53987,10 @@ "plasmid_name": "pYPQ284-RVRR", "sequence-type": "addgene-full", "addgene_id": "160327", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/160327.addgene-full.gb" }, @@ -42871,7 +53999,10 @@ "plasmid_name": "pTC-ApoE-Tet-YAP", "sequence-type": "addgene-full", "addgene_id": "85580", - "references": [], + "references": [ + "https://doi.org/10.1002/jgm.2940", + "https://www.ncbi.nlm.nih.gov/pubmed/28009940" + ], "kit": null, "file": "data/addgene_plasmids/85580.addgene-full.gb" }, @@ -42880,7 +54011,10 @@ "plasmid_name": "pYPQ148", "sequence-type": "depositor-full", "addgene_id": "69300", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69300.depositor-full.gb" }, @@ -42889,7 +54023,10 @@ "plasmid_name": "TFORF2958", "sequence-type": "addgene-full", "addgene_id": "144434", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144434.addgene-full.gb" }, @@ -42898,7 +54035,10 @@ "plasmid_name": "VHACg/pDONR221", "sequence-type": "addgene-full", "addgene_id": "172094", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.00722", + "https://www.ncbi.nlm.nih.gov/pubmed/31484679" + ], "kit": null, "file": "data/addgene_plasmids/172094.addgene-full.gb" }, @@ -42907,7 +54047,10 @@ "plasmid_name": "pDONR223_XPO1_p.E571A", "sequence-type": "addgene-full", "addgene_id": "81600", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -42919,7 +54062,10 @@ "plasmid_name": "pDONR221-SLC38A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161225", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161225.addgene-full.gb" }, @@ -42928,7 +54074,10 @@ "plasmid_name": "pJW3.42", "sequence-type": "depositor-full", "addgene_id": "62866", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62866.depositor-full.gb" }, @@ -42937,7 +54086,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep164", "sequence-type": "addgene-full", "addgene_id": "136873", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136873.addgene-full.gb" }, @@ -42946,7 +54098,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-C-mEGFP", "sequence-type": "addgene-full", "addgene_id": "223953", - "references": [], "kit": null, "file": "data/addgene_plasmids/223953.addgene-full.gb" }, @@ -42955,7 +54106,10 @@ "plasmid_name": "pDONR221_SLC13A2", "sequence-type": "addgene-full", "addgene_id": "131921", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131921.addgene-full.gb" }, @@ -42964,7 +54118,6 @@ "plasmid_name": "pLenti6.3/NS4B", "sequence-type": "addgene-full", "addgene_id": "120840", - "references": [], "kit": null, "file": "data/addgene_plasmids/120840.addgene-full.gb" }, @@ -42973,7 +54126,9 @@ "plasmid_name": "pMpGWB433", "sequence-type": "depositor-full", "addgene_id": "68698", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68698.depositor-full.gb" }, @@ -42982,7 +54137,10 @@ "plasmid_name": "TFORF3384", "sequence-type": "addgene-full", "addgene_id": "144860", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144860.addgene-full.gb" }, @@ -42991,7 +54149,10 @@ "plasmid_name": "pHAGE-ERBB2-T862A", "sequence-type": "addgene-full", "addgene_id": "116354", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116354.addgene-full.gb" }, @@ -43000,7 +54161,10 @@ "plasmid_name": "pcDNA3_DRD2-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194362", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194362.addgene-full.gb" }, @@ -43009,7 +54173,10 @@ "plasmid_name": "LIIalpha F 4-5", "sequence-type": "depositor-full", "addgene_id": "54352", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54352.depositor-full.gb" }, @@ -43018,7 +54185,9 @@ "plasmid_name": "pPB-cT3G-cERP2-PAX6b", "sequence-type": "addgene-full", "addgene_id": "222577", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222577.addgene-full.gb" }, @@ -43027,7 +54196,10 @@ "plasmid_name": "pDONR 221-AIP2 (NON-STOP)", "sequence-type": "addgene-full", "addgene_id": "118678", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118678.addgene-full.gb" }, @@ -43036,7 +54208,10 @@ "plasmid_name": "p3E-rab5c", "sequence-type": "addgene-full", "addgene_id": "109719", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109719.addgene-full.gb" }, @@ -43045,7 +54220,10 @@ "plasmid_name": "pDONR223_FBXO15_p.S366G", "sequence-type": "addgene-full", "addgene_id": "81409", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -43057,7 +54235,10 @@ "plasmid_name": "LA401: pMVP (L3-L2) P2A-Blast + WPRE", "sequence-type": "addgene-full", "addgene_id": "121784", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121784.addgene-full.gb" }, @@ -43066,7 +54247,10 @@ "plasmid_name": "KN901: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS-KRAB", "sequence-type": "addgene-full", "addgene_id": "121830", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121830.addgene-full.gb" }, @@ -43075,7 +54259,6 @@ "plasmid_name": "Hs.HRAS", "sequence-type": "depositor-full", "addgene_id": "83181", - "references": [], "kit": null, "file": "data/addgene_plasmids/83181.depositor-full.gb" }, @@ -43084,7 +54267,10 @@ "plasmid_name": "pDONR223_KEAP1_p.G603W", "sequence-type": "addgene-full", "addgene_id": "81492", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -43096,7 +54282,10 @@ "plasmid_name": "pHAGE-DDX3X-E285K", "sequence-type": "addgene-full", "addgene_id": "116226", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116226.addgene-full.gb" }, @@ -43105,7 +54294,10 @@ "plasmid_name": "pLVX-HA-UBE3B\u0394HECT-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107347", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "file": "data/addgene_plasmids/107347.addgene-full.gb" }, @@ -43114,7 +54306,10 @@ "plasmid_name": "TFORF3436", "sequence-type": "addgene-full", "addgene_id": "144912", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144912.addgene-full.gb" }, @@ -43123,7 +54318,10 @@ "plasmid_name": "BTG3", "sequence-type": "addgene-full", "addgene_id": "155427", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155427.addgene-full.gb" }, @@ -43132,7 +54330,10 @@ "plasmid_name": "pENTR-Site5", "sequence-type": "depositor-full", "addgene_id": "24514", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0009846", + "https://www.ncbi.nlm.nih.gov/pubmed/20352097" + ], "kit": null, "file": "data/addgene_plasmids/24514.depositor-full.gb" }, @@ -43141,7 +54342,10 @@ "plasmid_name": "TFORF3070", "sequence-type": "addgene-full", "addgene_id": "144546", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144546.addgene-full.gb" }, @@ -43150,7 +54354,9 @@ "plasmid_name": "pDONR221-RPS2", "sequence-type": "addgene-full", "addgene_id": "166205", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166205.addgene-full.gb" }, @@ -43159,7 +54365,10 @@ "plasmid_name": "pDONR221-SLC46A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161357", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161357.addgene-full.gb" }, @@ -43168,7 +54377,9 @@ "plasmid_name": "p3E-WPRE-bGH-pA (JDW 1221)", "sequence-type": "addgene-full", "addgene_id": "224527", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224527.addgene-full.gb" }, @@ -43177,7 +54388,10 @@ "plasmid_name": "pMXs-GLIS1", "sequence-type": "addgene-full", "addgene_id": "30166", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10106", + "https://www.ncbi.nlm.nih.gov/pubmed/21654807" + ], "kit": null, "file": "data/addgene_plasmids/30166.addgene-full.gb" }, @@ -43186,7 +54400,10 @@ "plasmid_name": "pAG306GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14355", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -43198,7 +54415,10 @@ "plasmid_name": "pMMDS DEST", "sequence-type": "addgene-full", "addgene_id": "206264", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206264.addgene-full.gb" }, @@ -43219,7 +54439,10 @@ "plasmid_name": "TFORF3296", "sequence-type": "addgene-full", "addgene_id": "144772", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144772.addgene-full.gb" }, @@ -43228,7 +54451,10 @@ "plasmid_name": "actc1b-mKate2-rab7b", "sequence-type": "addgene-full", "addgene_id": "109656", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109656.addgene-full.gb" }, @@ -43237,7 +54463,10 @@ "plasmid_name": "pENTR-ZmIAA4", "sequence-type": "addgene-full", "addgene_id": "188429", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188429.addgene-full.gb" }, @@ -43246,7 +54475,10 @@ "plasmid_name": "pDONR221_SLC22A13", "sequence-type": "addgene-full", "addgene_id": "131987", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131987.addgene-full.gb" }, @@ -43255,7 +54487,10 @@ "plasmid_name": "FUBP1", "sequence-type": "addgene-full", "addgene_id": "155613", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155613.addgene-full.gb" }, @@ -43264,7 +54499,9 @@ "plasmid_name": "pLenti/TO/EYFP-P2A-IDH1(HA)", "sequence-type": "addgene-full", "addgene_id": "122482", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29288440" + ], "kit": null, "file": "data/addgene_plasmids/122482.addgene-full.gb" }, @@ -43273,7 +54510,10 @@ "plasmid_name": "pDONR223_RB1_p.F755I", "sequence-type": "addgene-full", "addgene_id": "81546", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -43285,7 +54525,10 @@ "plasmid_name": "pDONR221-SLC18A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161163", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161163.addgene-full.gb" }, @@ -43294,7 +54537,10 @@ "plasmid_name": "pDONR221-SLC39A13_STOP", "sequence-type": "addgene-full", "addgene_id": "161283", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161283.addgene-full.gb" }, @@ -43303,7 +54549,10 @@ "plasmid_name": "5'-3xFLAG Kansl3+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212053", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212053.addgene-full.gb" }, @@ -43312,7 +54561,10 @@ "plasmid_name": "pDONR223_ACTG1_WT", "sequence-type": "addgene-full", "addgene_id": "81912", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -43324,7 +54576,9 @@ "plasmid_name": "pMpGWB127", "sequence-type": "depositor-full", "addgene_id": "68581", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68581.depositor-full.gb" }, @@ -43333,7 +54587,10 @@ "plasmid_name": "TFORF3016", "sequence-type": "addgene-full", "addgene_id": "144492", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144492.addgene-full.gb" }, @@ -43342,7 +54599,10 @@ "plasmid_name": "pR26 GFP Dest", "sequence-type": "depositor-full", "addgene_id": "74283", - "references": [], + "references": [ + "https://doi.org/10.1186/s12896-016-0234-4", + "https://www.ncbi.nlm.nih.gov/pubmed/26772810" + ], "kit": null, "file": "data/addgene_plasmids/74283.depositor-full.gb" }, @@ -43351,7 +54611,10 @@ "plasmid_name": "pLenti_EF1a_Flag_TP53_R248W+P278A", "sequence-type": "addgene-full", "addgene_id": "183115", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "file": "data/addgene_plasmids/183115.addgene-full.gb" }, @@ -43360,7 +54623,10 @@ "plasmid_name": "TFORF2933", "sequence-type": "addgene-full", "addgene_id": "144409", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144409.addgene-full.gb" }, @@ -43369,7 +54635,10 @@ "plasmid_name": "MAC_N_COMMD4", "sequence-type": "addgene-full", "addgene_id": "209677", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209677.addgene-full.gb" }, @@ -43378,7 +54647,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-pFOGc::RfA", "sequence-type": "addgene-full", "addgene_id": "186397", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186397.addgene-full.gb" }, @@ -43387,7 +54659,10 @@ "plasmid_name": "pLenti X2 Neo DEST (w18-1)", "sequence-type": "depositor-full", "addgene_id": "17390", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17390.depositor-full.gb" }, @@ -43396,7 +54671,10 @@ "plasmid_name": "pDONR221-kcnj3b", "sequence-type": "addgene-full", "addgene_id": "173130", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173130.addgene-full.gb" }, @@ -43405,7 +54683,10 @@ "plasmid_name": "pBS L30 Ruby3-Rab6A", "sequence-type": "addgene-full", "addgene_id": "135653", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.aba7803", + "https://www.ncbi.nlm.nih.gov/pubmed/33523982" + ], "kit": null, "file": "data/addgene_plasmids/135653.addgene-full.gb" }, @@ -43414,7 +54695,10 @@ "plasmid_name": "pDONR221-SLC25A30_STOP", "sequence-type": "addgene-full", "addgene_id": "161218", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161218.addgene-full.gb" }, @@ -43423,7 +54707,10 @@ "plasmid_name": "MED9_pLX307", "sequence-type": "addgene-full", "addgene_id": "98352", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98352.addgene-full.gb" }, @@ -43432,7 +54719,6 @@ "plasmid_name": "R777-E048 Hs.E2F2-nostop", "sequence-type": "depositor-full", "addgene_id": "70332", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -43444,7 +54730,10 @@ "plasmid_name": "pDONR221-ZNF736", "sequence-type": "depositor-full", "addgene_id": "101602", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101602.depositor-full.gb" }, @@ -43453,7 +54742,10 @@ "plasmid_name": "pDONR223_KEAP1_p.R601W", "sequence-type": "addgene-full", "addgene_id": "82794", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82794.addgene-full.gb" }, @@ -43462,7 +54754,10 @@ "plasmid_name": "pDONR223_BRAF_p.K601N", "sequence-type": "addgene-full", "addgene_id": "82820", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82820.addgene-full.gb" }, @@ -43471,7 +54766,10 @@ "plasmid_name": "pAG306-GPD-VMA1 chr I", "sequence-type": "depositor-full", "addgene_id": "41896", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11654", + "https://www.ncbi.nlm.nih.gov/pubmed/23172144" + ], "kit": null, "file": "data/addgene_plasmids/41896.depositor-full.gb" }, @@ -43480,7 +54778,10 @@ "plasmid_name": "pHAGE-ESR1-L536Q", "sequence-type": "addgene-full", "addgene_id": "116369", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116369.addgene-full.gb" }, @@ -43489,7 +54790,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-H2B-mCherry (dual gRNA: Neurog2 x2)", "sequence-type": "addgene-full", "addgene_id": "171100", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/171100.addgene-full.gb" }, @@ -43498,7 +54802,10 @@ "plasmid_name": "pGWB409", "sequence-type": "depositor-full", "addgene_id": "74803", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74803.depositor-full.gb" }, @@ -43507,7 +54814,10 @@ "plasmid_name": "pZmUBQ:GW", "sequence-type": "addgene-full", "addgene_id": "132358", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0502-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31666804" + ], "kit": null, "file": "data/addgene_plasmids/132358.addgene-full.gb" }, @@ -43516,7 +54826,10 @@ "plasmid_name": "pLX313-TP53-P278A", "sequence-type": "addgene-full", "addgene_id": "118015", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-018-0204-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30224644" + ], "kit": null, "file": "data/addgene_plasmids/118015.addgene-full.gb" }, @@ -43525,7 +54838,10 @@ "plasmid_name": "pDONR223_PDZD11_p.R133H", "sequence-type": "addgene-full", "addgene_id": "81264", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -43537,7 +54853,6 @@ "plasmid_name": "IDG_CLIC5_OE_1", "sequence-type": "addgene-full", "addgene_id": "161641", - "references": [], "kit": null, "file": "data/addgene_plasmids/161641.addgene-full.gb" }, @@ -43546,7 +54861,10 @@ "plasmid_name": "pDESTmycTNRC6C", "sequence-type": "depositor-full", "addgene_id": "19874", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19874.depositor-full.gb" }, @@ -43555,7 +54873,10 @@ "plasmid_name": "FL-mCherry", "sequence-type": "addgene-full", "addgene_id": "78862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "file": "data/addgene_plasmids/78862.addgene-full.gb" }, @@ -43564,7 +54885,10 @@ "plasmid_name": "pDONR207-MUM2sp-RglA", "sequence-type": "addgene-full", "addgene_id": "170720", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcab077", + "https://www.ncbi.nlm.nih.gov/pubmed/34059917" + ], "kit": null, "file": "data/addgene_plasmids/170720.addgene-full.gb" }, @@ -43573,7 +54897,10 @@ "plasmid_name": "MAC_C_CH60", "sequence-type": "addgene-full", "addgene_id": "111662", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111662.addgene-full.gb" }, @@ -43582,7 +54909,10 @@ "plasmid_name": "D. vulgaris Cas7/pHMGWA", "sequence-type": "addgene-full", "addgene_id": "81184", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2016.07.027", + "https://www.ncbi.nlm.nih.gov/pubmed/27588603" + ], "kit": null, "file": "data/addgene_plasmids/81184.addgene-full.gb" }, @@ -43591,7 +54921,10 @@ "plasmid_name": "pYPQ265G2", "sequence-type": "addgene-full", "addgene_id": "164723", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164723.addgene-full.gb" }, @@ -43600,7 +54933,10 @@ "plasmid_name": "pDONR-attL5-CRY2-mCh-attL2", "sequence-type": "addgene-full", "addgene_id": "160438", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.3856", + "https://www.ncbi.nlm.nih.gov/pubmed/33659494" + ], "kit": null, "file": "data/addgene_plasmids/160438.addgene-full.gb" }, @@ -43609,7 +54945,10 @@ "plasmid_name": "pDONR223-LRPPRC", "sequence-type": "addgene-full", "addgene_id": "23521", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -43621,7 +54960,6 @@ "plasmid_name": "R777-E280 Hs.RHOB-nostop", "sequence-type": "depositor-full", "addgene_id": "70564", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -43633,7 +54971,10 @@ "plasmid_name": "pHAGE-DDX3X", "sequence-type": "addgene-full", "addgene_id": "116730", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116730.addgene-full.gb" }, @@ -43642,7 +54983,10 @@ "plasmid_name": "SF3B3", "sequence-type": "addgene-full", "addgene_id": "156003", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156003.addgene-full.gb" }, @@ -43651,7 +54995,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp10", "sequence-type": "depositor-full", "addgene_id": "168823", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168823.depositor-full.gb" }, @@ -43660,7 +55007,10 @@ "plasmid_name": "pCPP5530", "sequence-type": "addgene-full", "addgene_id": "128705", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128705.addgene-full.gb" }, @@ -43669,7 +55019,10 @@ "plasmid_name": "pDONR221_SLC22A16", "sequence-type": "addgene-full", "addgene_id": "132023", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132023.addgene-full.gb" }, @@ -43678,7 +55031,10 @@ "plasmid_name": "pHAGE-3FLAG-TFR1", "sequence-type": "addgene-full", "addgene_id": "176490", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "file": "data/addgene_plasmids/176490.addgene-full.gb" }, @@ -43687,7 +55043,6 @@ "plasmid_name": "pTpPBR11_accNAT_GWB", "sequence-type": "addgene-full", "addgene_id": "154033", - "references": [], "kit": null, "file": "data/addgene_plasmids/154033.addgene-full.gb" }, @@ -43696,7 +55051,10 @@ "plasmid_name": "pDONR221-ZNF852_isoform1", "sequence-type": "depositor-full", "addgene_id": "101533", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101533.depositor-full.gb" }, @@ -43705,7 +55063,6 @@ "plasmid_name": "pDEST26-hTICAM1-Nluc", "sequence-type": "addgene-full", "addgene_id": "197634", - "references": [], "kit": null, "file": "data/addgene_plasmids/197634.addgene-full.gb" }, @@ -43714,7 +55071,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV NS4A", "sequence-type": "addgene-full", "addgene_id": "145366", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145366.addgene-full.gb" }, @@ -43723,7 +55083,10 @@ "plasmid_name": "C234-E24: attB2r-Strep2-attB3", "sequence-type": "addgene-full", "addgene_id": "162913", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -43735,7 +55098,10 @@ "plasmid_name": "pDONR223_VEGFC_WT", "sequence-type": "addgene-full", "addgene_id": "82282", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82282.addgene-full.gb" }, @@ -43744,7 +55110,9 @@ "plasmid_name": "piggyBac-rtTA (4th_Gen)-SNCA(A53T-DNAC)-sfGFP-IRES-NGN2-puro (VK_1124)", "sequence-type": "addgene-full", "addgene_id": "209081", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.11.08.515615" + ], "kit": null, "file": "data/addgene_plasmids/209081.addgene-full.gb" }, @@ -43753,7 +55121,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3C G126", "sequence-type": "addgene-full", "addgene_id": "123096", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123096.addgene-full.gb" }, @@ -43762,7 +55133,10 @@ "plasmid_name": "pAd-PR.Cre", "sequence-type": "addgene-full", "addgene_id": "192936", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "file": "data/addgene_plasmids/192936.addgene-full.gb" }, @@ -43771,7 +55145,10 @@ "plasmid_name": "ADAMTS5_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53819", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53819.addgene-full.gb" }, @@ -43780,7 +55157,10 @@ "plasmid_name": "pDONR221_SLC5A11", "sequence-type": "addgene-full", "addgene_id": "132217", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132217.addgene-full.gb" }, @@ -43789,7 +55169,10 @@ "plasmid_name": "pMCS-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209361", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209361.addgene-full.gb" }, @@ -43798,7 +55181,10 @@ "plasmid_name": "p667-UBC-NRF1-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207810", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207810.addgene-full.gb" }, @@ -43807,7 +55193,10 @@ "plasmid_name": "pDEST27-GST-hMSN", "sequence-type": "addgene-full", "addgene_id": "211823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2023.105382", + "https://www.ncbi.nlm.nih.gov/pubmed/37866628" + ], "kit": null, "file": "data/addgene_plasmids/211823.addgene-full.gb" }, @@ -43816,7 +55205,10 @@ "plasmid_name": "pDONR223_SNAI2_WT", "sequence-type": "addgene-full", "addgene_id": "82162", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82162.addgene-full.gb" }, @@ -43825,7 +55217,10 @@ "plasmid_name": "pLX_TRC311 ETV1", "sequence-type": "depositor-full", "addgene_id": "74981", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/28178529" + ], "kit": null, "file": "data/addgene_plasmids/74981.depositor-full.gb" }, @@ -43834,7 +55229,10 @@ "plasmid_name": "pAG426GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14299", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -43846,7 +55244,10 @@ "plasmid_name": "MAC_C_RON", "sequence-type": "addgene-full", "addgene_id": "187783", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187783.addgene-full.gb" }, @@ -43855,7 +55256,10 @@ "plasmid_name": "pCFJ1972 - [1-2] ENTR - Flour - TagBFP2(NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159844", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159844.addgene-full.gb" }, @@ -43864,7 +55268,10 @@ "plasmid_name": "pHAGE-PIK3CA-I910V", "sequence-type": "addgene-full", "addgene_id": "116504", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116504.addgene-full.gb" }, @@ -43873,7 +55280,10 @@ "plasmid_name": "pENTR eGFPCRE L1-R5", "sequence-type": "depositor-full", "addgene_id": "43960", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "file": "data/addgene_plasmids/43960.depositor-full.gb" }, @@ -43882,7 +55292,10 @@ "plasmid_name": "599 p3E-mcs1", "sequence-type": "depositor-full", "addgene_id": "49004", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49004.depositor-full.gb" }, @@ -43891,7 +55304,10 @@ "plasmid_name": "Zebrabow-GateDest", "sequence-type": "addgene-full", "addgene_id": "118221", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094631", + "https://www.ncbi.nlm.nih.gov/pubmed/23757414" + ], "kit": null, "file": "data/addgene_plasmids/118221.addgene-full.gb" }, @@ -43900,7 +55316,10 @@ "plasmid_name": "pcDNA5/BirA/FLAG-DDX54", "sequence-type": "addgene-full", "addgene_id": "97063", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.218438.116", + "https://www.ncbi.nlm.nih.gov/pubmed/28596291" + ], "kit": null, "file": "data/addgene_plasmids/97063.addgene-full.gb" }, @@ -43909,7 +55328,10 @@ "plasmid_name": "pDONR221-SLC13A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161475", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161475.addgene-full.gb" }, @@ -43918,7 +55340,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj13-Q153H-EGFP", "sequence-type": "addgene-full", "addgene_id": "164943", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164943.addgene-full.gb" }, @@ -43927,7 +55352,10 @@ "plasmid_name": "pDONR223_NFKBIB_WT", "sequence-type": "addgene-full", "addgene_id": "82219", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82219.addgene-full.gb" }, @@ -43936,7 +55364,9 @@ "plasmid_name": "pDRF'- AmTryoshka1;3-LS-F138I-T78H", "sequence-type": "addgene-full", "addgene_id": "100963", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "file": "data/addgene_plasmids/100963.addgene-full.gb" }, @@ -43945,7 +55375,10 @@ "plasmid_name": "pGLTR-FP-GFP", "sequence-type": "depositor-full", "addgene_id": "58242", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "file": "data/addgene_plasmids/58242.depositor-full.gb" }, @@ -43954,7 +55387,10 @@ "plasmid_name": "pMEsnx5P1gfp", "sequence-type": "addgene-full", "addgene_id": "90131", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90131.addgene-full.gb" }, @@ -43963,7 +55399,10 @@ "plasmid_name": "pCAG/ATP9A-HA", "sequence-type": "addgene-full", "addgene_id": "209213", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209213.addgene-full.gb" }, @@ -43972,7 +55411,10 @@ "plasmid_name": "PE_18: Plux_lac_eG", "sequence-type": "addgene-full", "addgene_id": "104871", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104871.addgene-full.gb" }, @@ -43981,7 +55423,10 @@ "plasmid_name": "pDONR223 LC3A no-stop", "sequence-type": "addgene-full", "addgene_id": "123204", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123204.addgene-full.gb" }, @@ -43990,7 +55435,10 @@ "plasmid_name": "pME-Cas9", "sequence-type": "addgene-full", "addgene_id": "63154", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.01.032", + "https://www.ncbi.nlm.nih.gov/pubmed/25752963" + ], "kit": null, "file": "data/addgene_plasmids/63154.addgene-full.gb" }, @@ -43999,7 +55447,6 @@ "plasmid_name": "pENTR-L4R1-CAG", "sequence-type": "addgene-full", "addgene_id": "139522", - "references": [], "kit": null, "file": "data/addgene_plasmids/139522.addgene-full.gb" }, @@ -44008,7 +55455,10 @@ "plasmid_name": "TFORF3530", "sequence-type": "depositor-full", "addgene_id": "145006", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145006.depositor-full.gb" }, @@ -44017,7 +55467,6 @@ "plasmid_name": "p667-UBC-hcRed-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135237", - "references": [], "kit": null, "file": "data/addgene_plasmids/135237.addgene-full.gb" }, @@ -44026,7 +55475,10 @@ "plasmid_name": "pDEST-mCherry-LacR-BRCA1 1366-1437", "sequence-type": "depositor-full", "addgene_id": "71118", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71118.depositor-full.gb" }, @@ -44035,7 +55487,10 @@ "plasmid_name": "pDONR223_NFE2L2_WT", "sequence-type": "addgene-full", "addgene_id": "81259", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81259.addgene-full.gb" }, @@ -44044,7 +55499,6 @@ "plasmid_name": "R777-E196 Hs.PRKAB1-nostop", "sequence-type": "depositor-full", "addgene_id": "70480", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -44056,7 +55510,10 @@ "plasmid_name": "pAG413GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14333", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -44068,7 +55525,10 @@ "plasmid_name": "pGC319", "sequence-type": "depositor-full", "addgene_id": "19677", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19677.depositor-full.gb" }, @@ -44077,7 +55537,6 @@ "plasmid_name": "pLEX307-FURIN-puro", "sequence-type": "addgene-full", "addgene_id": "158460", - "references": [], "kit": null, "file": "data/addgene_plasmids/158460.addgene-full.gb" }, @@ -44086,7 +55545,10 @@ "plasmid_name": "pDONR221_SLC35F5", "sequence-type": "addgene-full", "addgene_id": "132085", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132085.addgene-full.gb" }, @@ -44095,7 +55557,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::B1-NLSLacZ-B2", "sequence-type": "addgene-full", "addgene_id": "186413", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186413.addgene-full.gb" }, @@ -44104,7 +55569,10 @@ "plasmid_name": "pHAGE-STK31", "sequence-type": "addgene-full", "addgene_id": "116796", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116796.addgene-full.gb" }, @@ -44113,7 +55581,10 @@ "plasmid_name": "pENTR221-mCherry", "sequence-type": "addgene-full", "addgene_id": "79509", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79509.addgene-full.gb" }, @@ -44122,7 +55593,10 @@ "plasmid_name": "pHAGE-HTATSF1__BRS3", "sequence-type": "addgene-full", "addgene_id": "116822", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116822.addgene-full.gb" }, @@ -44131,7 +55605,10 @@ "plasmid_name": "R701-X54-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) G12D", "sequence-type": "addgene-full", "addgene_id": "159562", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159562.addgene-full.gb" }, @@ -44140,7 +55617,10 @@ "plasmid_name": "pRQ-Id1HA", "sequence-type": "depositor-full", "addgene_id": "18112", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0801505105", + "https://www.ncbi.nlm.nih.gov/pubmed/18378907" + ], "kit": null, "file": "data/addgene_plasmids/18112.depositor-full.gb" }, @@ -44149,7 +55629,10 @@ "plasmid_name": "pg-dsRedXP-HIF-2alpha", "sequence-type": "addgene-full", "addgene_id": "87209", - "references": [], + "references": [ + "https://doi.org/10.1098/rsob.160195", + "https://www.ncbi.nlm.nih.gov/pubmed/27655733" + ], "kit": null, "file": "data/addgene_plasmids/87209.addgene-full.gb" }, @@ -44158,7 +55641,10 @@ "plasmid_name": "p3E DN Kif5a", "sequence-type": "addgene-full", "addgene_id": "105973", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21206", + "https://www.ncbi.nlm.nih.gov/pubmed/26879757" + ], "kit": null, "file": "data/addgene_plasmids/105973.addgene-full.gb" }, @@ -44167,7 +55653,10 @@ "plasmid_name": "PB-hEF1a-MG", "sequence-type": "addgene-full", "addgene_id": "175504", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175504.addgene-full.gb" }, @@ -44176,7 +55665,10 @@ "plasmid_name": "R713-M91-303: CMV51p> Halotag-Hs.NRAS", "sequence-type": "addgene-full", "addgene_id": "159682", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "file": "data/addgene_plasmids/159682.addgene-full.gb" }, @@ -44185,7 +55677,10 @@ "plasmid_name": "pDONR223-PRKAR2B", "sequence-type": "addgene-full", "addgene_id": "23667", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -44197,7 +55692,10 @@ "plasmid_name": "pENTR1A hu_ncOGT WT (open N-term)", "sequence-type": "addgene-full", "addgene_id": "155197", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/155197.addgene-full.gb" }, @@ -44206,7 +55704,10 @@ "plasmid_name": "pDONR221-Cka2", "sequence-type": "addgene-full", "addgene_id": "99980", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99980.addgene-full.gb" }, @@ -44215,7 +55716,10 @@ "plasmid_name": "pHAGE-PIK3CA-E469delinsDK", "sequence-type": "addgene-full", "addgene_id": "116476", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116476.addgene-full.gb" }, @@ -44224,7 +55728,10 @@ "plasmid_name": "pAC150-FAM134C-GFP", "sequence-type": "addgene-full", "addgene_id": "201932", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "file": "data/addgene_plasmids/201932.addgene-full.gb" }, @@ -44233,7 +55740,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 M", "sequence-type": "addgene-full", "addgene_id": "141274", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141274.addgene-full.gb" }, @@ -44242,7 +55752,10 @@ "plasmid_name": "pLgw NKX2-5Y191C-V5-EcoDam", "sequence-type": "addgene-full", "addgene_id": "98599", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98599.addgene-full.gb" }, @@ -44251,7 +55764,6 @@ "plasmid_name": "pDEST2T18ms", "sequence-type": "depositor-full", "addgene_id": "72647", - "references": [], "kit": null, "file": "data/addgene_plasmids/72647.depositor-full.gb" }, @@ -44260,7 +55772,10 @@ "plasmid_name": "pDL2", "sequence-type": "addgene-full", "addgene_id": "175884", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175884.addgene-full.gb" }, @@ -44269,7 +55784,6 @@ "plasmid_name": "R777-E070 Hs.EXOC2-nostop", "sequence-type": "depositor-full", "addgene_id": "70354", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -44281,7 +55795,10 @@ "plasmid_name": "pENTR-L3-Csy4-Cas9-L2", "sequence-type": "addgene-full", "addgene_id": "141040", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141040.addgene-full.gb" }, @@ -44290,7 +55807,10 @@ "plasmid_name": "pSGE_710_S2-2-twi_dCP", "sequence-type": "depositor-full", "addgene_id": "71156", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71156.depositor-full.gb" }, @@ -44299,7 +55819,10 @@ "plasmid_name": "pHAGE-PTPN11-E76Q", "sequence-type": "addgene-full", "addgene_id": "116642", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116642.addgene-full.gb" }, @@ -44308,7 +55831,10 @@ "plasmid_name": "pGC320", "sequence-type": "depositor-full", "addgene_id": "19639", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19639.depositor-full.gb" }, @@ -44317,7 +55843,10 @@ "plasmid_name": "pDONR223-ZNF30", "sequence-type": "addgene-full", "addgene_id": "88681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88681.addgene-full.gb" }, @@ -44326,7 +55855,10 @@ "plasmid_name": "pGWB523", "sequence-type": "depositor-full", "addgene_id": "74865", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74865.depositor-full.gb" }, @@ -44335,7 +55867,10 @@ "plasmid_name": "pSLIK_Hyg_mTurquoise2_Atg4BC74A", "sequence-type": "addgene-full", "addgene_id": "161733", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2229-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32376951" + ], "kit": null, "file": "data/addgene_plasmids/161733.addgene-full.gb" }, @@ -44344,7 +55879,9 @@ "plasmid_name": "pDONR207-mTalin", "sequence-type": "addgene-full", "addgene_id": "100591", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27703856" + ], "kit": null, "file": "data/addgene_plasmids/100591.addgene-full.gb" }, @@ -44353,7 +55890,10 @@ "plasmid_name": "pDest-669 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161887", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -44365,7 +55905,10 @@ "plasmid_name": "pDONR223_B2M_p.Y30H", "sequence-type": "addgene-full", "addgene_id": "81316", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -44377,7 +55920,10 @@ "plasmid_name": "pCFJ2370 - intron GG3 - 250bp", "sequence-type": "addgene-full", "addgene_id": "159879", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159879.addgene-full.gb" }, @@ -44386,7 +55932,10 @@ "plasmid_name": "MAC_N_IRF8", "sequence-type": "addgene-full", "addgene_id": "167763", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167763.addgene-full.gb" }, @@ -44395,7 +55944,10 @@ "plasmid_name": "pDONR223-PFKM", "sequence-type": "addgene-full", "addgene_id": "23728", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -44407,7 +55959,10 @@ "plasmid_name": "pHAGE-PIK3CA-R93P", "sequence-type": "addgene-full", "addgene_id": "116539", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116539.addgene-full.gb" }, @@ -44416,7 +55971,10 @@ "plasmid_name": "pHAGE TRE dCas9-VP64", "sequence-type": "addgene-full", "addgene_id": "50916", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.103341", + "https://www.ncbi.nlm.nih.gov/pubmed/24346702" + ], "kit": null, "file": "data/addgene_plasmids/50916.addgene-full.gb" }, @@ -44425,7 +55983,10 @@ "plasmid_name": "pDONR221_SLC28A3", "sequence-type": "addgene-full", "addgene_id": "132151", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132151.addgene-full.gb" }, @@ -44434,7 +55995,10 @@ "plasmid_name": "pWS482", "sequence-type": "addgene-full", "addgene_id": "123030", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123030.addgene-full.gb" }, @@ -44443,7 +56007,6 @@ "plasmid_name": "DDX3X - A501E in pENTR", "sequence-type": "addgene-full", "addgene_id": "216583", - "references": [], "kit": null, "file": "data/addgene_plasmids/216583.addgene-full.gb" }, @@ -44452,7 +56015,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(D256A)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128677", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128677.addgene-full.gb" }, @@ -44461,7 +56027,6 @@ "plasmid_name": "R777-E349 Hs.TIAM2", "sequence-type": "depositor-full", "addgene_id": "70633", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -44473,7 +56038,10 @@ "plasmid_name": "pAG426GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14180", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -44485,7 +56053,10 @@ "plasmid_name": "Silene_conica _PheRS_PlastidTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202660", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "file": "data/addgene_plasmids/202660.addgene-full.gb" }, @@ -44494,7 +56065,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-V12-puro", "sequence-type": "addgene-full", "addgene_id": "156171", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156171.addgene-full.gb" }, @@ -44503,7 +56077,10 @@ "plasmid_name": "pDONR223_PRKACB_WT", "sequence-type": "addgene-full", "addgene_id": "82224", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82224.addgene-full.gb" }, @@ -44512,7 +56089,10 @@ "plasmid_name": "pGL4_EGR1p-BC1489-luc2", "sequence-type": "addgene-full", "addgene_id": "214653", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214653.addgene-full.gb" }, @@ -44521,7 +56101,10 @@ "plasmid_name": "pENTR223-BLRF2", "sequence-type": "addgene-full", "addgene_id": "195776", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195776.addgene-full.gb" }, @@ -44530,7 +56113,10 @@ "plasmid_name": "pDestTol2CG2-mnx1:ReaChR-citrine", "sequence-type": "addgene-full", "addgene_id": "169046", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2020.05.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32516597" + ], "kit": null, "file": "data/addgene_plasmids/169046.addgene-full.gb" }, @@ -44539,7 +56125,10 @@ "plasmid_name": "pDONR221-SLC35G6_STOP", "sequence-type": "addgene-full", "addgene_id": "161262", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161262.addgene-full.gb" }, @@ -44548,7 +56137,10 @@ "plasmid_name": "pDONR223_SPOP_p.K134N", "sequence-type": "addgene-full", "addgene_id": "81647", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -44560,7 +56152,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-ERN2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189905", - "references": [], "kit": null, "file": "data/addgene_plasmids/189905.addgene-full.gb" }, @@ -44569,7 +56160,10 @@ "plasmid_name": "CCNT1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98328", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98328.addgene-full.gb" }, @@ -44578,7 +56172,10 @@ "plasmid_name": "TFORF2997", "sequence-type": "addgene-full", "addgene_id": "144473", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144473.addgene-full.gb" }, @@ -44587,8 +56184,11 @@ "plasmid_name": "pLenti-sgRNA-Lib", "sequence-type": "addgene-full", "addgene_id": "53121", - "references": [], - "kit": null, + "references": [ + "https://doi.org/10.1038/nature13166", + "https://www.ncbi.nlm.nih.gov/pubmed/24717434" + ], + "kit": null, "file": "data/addgene_plasmids/53121.addgene-full.gb" }, { @@ -44596,7 +56196,10 @@ "plasmid_name": "pmyc-TNRC6B", "sequence-type": "depositor-full", "addgene_id": "10978", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2005.10.048", + "https://www.ncbi.nlm.nih.gov/pubmed/16289642" + ], "kit": null, "file": "data/addgene_plasmids/10978.depositor-full.gb" }, @@ -44605,7 +56208,10 @@ "plasmid_name": "BAF-S4A-tet-puro", "sequence-type": "addgene-full", "addgene_id": "199649", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "file": "data/addgene_plasmids/199649.addgene-full.gb" }, @@ -44614,7 +56220,10 @@ "plasmid_name": "DDX24", "sequence-type": "addgene-full", "addgene_id": "155512", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155512.addgene-full.gb" }, @@ -44623,7 +56232,10 @@ "plasmid_name": "Ad-FOXO1 1-456", "sequence-type": "addgene-full", "addgene_id": "131532", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "file": "data/addgene_plasmids/131532.addgene-full.gb" }, @@ -44632,7 +56244,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp1", "sequence-type": "addgene-full", "addgene_id": "168841", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168841.addgene-full.gb" }, @@ -44641,7 +56256,10 @@ "plasmid_name": "p3E-ML1N*2(7Q)", "sequence-type": "depositor-full", "addgene_id": "67679", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67679.depositor-full.gb" }, @@ -44650,7 +56268,10 @@ "plasmid_name": "TFORF3351", "sequence-type": "addgene-full", "addgene_id": "144827", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144827.addgene-full.gb" }, @@ -44659,7 +56280,10 @@ "plasmid_name": "pHAGE-EGFR-V292M", "sequence-type": "addgene-full", "addgene_id": "116313", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116313.addgene-full.gb" }, @@ -44668,7 +56292,10 @@ "plasmid_name": "pDONR221_SLC24A2", "sequence-type": "addgene-full", "addgene_id": "131966", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131966.addgene-full.gb" }, @@ -44677,7 +56304,10 @@ "plasmid_name": "TFORF3317", "sequence-type": "addgene-full", "addgene_id": "144793", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144793.addgene-full.gb" }, @@ -44686,7 +56316,10 @@ "plasmid_name": "pENTR-R4r-LucmiR-EGFP-R3r", "sequence-type": "depositor-full", "addgene_id": "32589", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32589.depositor-full.gb" }, @@ -44695,7 +56328,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Centrin2", "sequence-type": "addgene-full", "addgene_id": "136834", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136834.addgene-full.gb" }, @@ -44704,7 +56340,10 @@ "plasmid_name": "pDONR221-SLC25A28_STOP", "sequence-type": "addgene-full", "addgene_id": "161182", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161182.addgene-full.gb" }, @@ -44713,7 +56352,6 @@ "plasmid_name": "pSCM167-Flag-hSFRP1(aa181-314)", "sequence-type": "addgene-full", "addgene_id": "189551", - "references": [], "kit": null, "file": "data/addgene_plasmids/189551.addgene-full.gb" }, @@ -44722,7 +56360,10 @@ "plasmid_name": "pDONR223_IDH2_p.R188W", "sequence-type": "addgene-full", "addgene_id": "82775", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82775.addgene-full.gb" }, @@ -44731,7 +56372,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-wt", "sequence-type": "depositor-full", "addgene_id": "46719", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46719.depositor-full.gb" }, @@ -44740,7 +56384,10 @@ "plasmid_name": "MLKS2delARMexp", "sequence-type": "addgene-full", "addgene_id": "130864", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "file": "data/addgene_plasmids/130864.addgene-full.gb" }, @@ -44749,7 +56396,10 @@ "plasmid_name": "pDONR221-MFSD6_STOP", "sequence-type": "addgene-full", "addgene_id": "161119", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161119.addgene-full.gb" }, @@ -44758,7 +56408,10 @@ "plasmid_name": "pHAGE-FGFR3-V172I", "sequence-type": "addgene-full", "addgene_id": "116388", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116388.addgene-full.gb" }, @@ -44767,7 +56420,10 @@ "plasmid_name": "TFORF3232", "sequence-type": "addgene-full", "addgene_id": "144708", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144708.addgene-full.gb" }, @@ -44776,7 +56432,10 @@ "plasmid_name": "EXOSC10", "sequence-type": "addgene-full", "addgene_id": "155589", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155589.addgene-full.gb" }, @@ -44785,7 +56444,6 @@ "plasmid_name": "pDONR221-W279A-long-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192095", - "references": [], "kit": null, "file": "data/addgene_plasmids/192095.addgene-full.gb" }, @@ -44794,7 +56452,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-emiRFP703-RfA", "sequence-type": "addgene-full", "addgene_id": "186376", - "references": [], "kit": null, "file": "data/addgene_plasmids/186376.addgene-full.gb" }, @@ -44803,7 +56460,9 @@ "plasmid_name": "iTol2Amp-\u03b3-crystallin:RFP", "sequence-type": "addgene-full", "addgene_id": "108455", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29382818" + ], "kit": null, "file": "data/addgene_plasmids/108455.addgene-full.gb" }, @@ -44812,7 +56471,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP12", "sequence-type": "addgene-full", "addgene_id": "154410", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154410.addgene-full.gb" }, @@ -44821,7 +56483,9 @@ "plasmid_name": "pME-Sun1-2xsfGFP-6xMYC-pA (JDW 681)", "sequence-type": "addgene-full", "addgene_id": "224489", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224489.addgene-full.gb" }, @@ -44830,7 +56494,10 @@ "plasmid_name": "pFRT_TO_FlagHA_TIAL1", "sequence-type": "addgene-full", "addgene_id": "106090", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106090.addgene-full.gb" }, @@ -44839,7 +56506,6 @@ "plasmid_name": "pCDNA.3-V5-SPOP (R354H)", "sequence-type": "addgene-full", "addgene_id": "197023", - "references": [], "kit": null, "file": "data/addgene_plasmids/197023.addgene-full.gb" }, @@ -44848,7 +56514,10 @@ "plasmid_name": "TFORF3492", "sequence-type": "addgene-full", "addgene_id": "144968", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144968.addgene-full.gb" }, @@ -44857,7 +56526,10 @@ "plasmid_name": "pAFMW-Nbr[C399-625]", "sequence-type": "addgene-full", "addgene_id": "188587", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188587.addgene-full.gb" }, @@ -44866,7 +56538,10 @@ "plasmid_name": "pJA255", "sequence-type": "depositor-full", "addgene_id": "21508", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "file": "data/addgene_plasmids/21508.depositor-full.gb" }, @@ -44875,7 +56550,10 @@ "plasmid_name": "LC501: pMVP (L3-L2) mCherry + polyA", "sequence-type": "addgene-full", "addgene_id": "121765", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121765.addgene-full.gb" }, @@ -44884,7 +56562,10 @@ "plasmid_name": "SPOP-V5 (BTB+BACK)", "sequence-type": "addgene-full", "addgene_id": "169723", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169723.addgene-full.gb" }, @@ -44893,7 +56574,10 @@ "plasmid_name": "pAAV_8xTEAD_luc2", "sequence-type": "addgene-full", "addgene_id": "173005", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/173005.addgene-full.gb" }, @@ -44902,7 +56586,6 @@ "plasmid_name": "pEF 1-E8-4", "sequence-type": "depositor-full", "addgene_id": "20090", - "references": [], "kit": null, "file": "data/addgene_plasmids/20090.depositor-full.gb" }, @@ -44911,7 +56594,10 @@ "plasmid_name": "pDONR223_EGFR_p.G719D", "sequence-type": "addgene-full", "addgene_id": "81708", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -44923,7 +56609,9 @@ "plasmid_name": "pMpGWB332", "sequence-type": "depositor-full", "addgene_id": "68660", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68660.depositor-full.gb" }, @@ -44932,7 +56620,10 @@ "plasmid_name": "pECIA2", "sequence-type": "depositor-full", "addgene_id": "47032", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.06.006", + "https://www.ncbi.nlm.nih.gov/pubmed/23827685" + ], "kit": null, "file": "data/addgene_plasmids/47032.depositor-full.gb" }, @@ -44941,7 +56632,10 @@ "plasmid_name": "pAG304GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14207", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -44953,7 +56647,10 @@ "plasmid_name": "pMOS019E: Entry vector for: ClopHensorN chloride sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163066", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163066.addgene-full.gb" }, @@ -44962,7 +56659,10 @@ "plasmid_name": "pJAK2.D", "sequence-type": "depositor-full", "addgene_id": "29465", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2009.07.003", + "https://www.ncbi.nlm.nih.gov/pubmed/19647016" + ], "kit": null, "file": "data/addgene_plasmids/29465.depositor-full.gb" }, @@ -44971,7 +56671,9 @@ "plasmid_name": "p3E-P2A-MCS no-pA", "sequence-type": "depositor-full", "addgene_id": "80825", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80825.depositor-full.gb" }, @@ -44980,7 +56682,10 @@ "plasmid_name": "pHAGE-BMPR2-Q6*", "sequence-type": "addgene-full", "addgene_id": "116127", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116127.addgene-full.gb" }, @@ -44989,7 +56694,10 @@ "plasmid_name": "pCZGY2850", "sequence-type": "addgene-full", "addgene_id": "87758", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/87758.addgene-full.gb" }, @@ -45010,7 +56718,10 @@ "plasmid_name": "pDONR223_COPS2_WT", "sequence-type": "addgene-full", "addgene_id": "81793", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -45022,7 +56733,6 @@ "plasmid_name": "p41Nat 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58546", - "references": [], "kit": null, "file": "data/addgene_plasmids/58546.depositor-full.gb" }, @@ -45031,7 +56741,10 @@ "plasmid_name": "Lenti-CMV-PRB", "sequence-type": "addgene-full", "addgene_id": "206165", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "file": "data/addgene_plasmids/206165.addgene-full.gb" }, @@ -45040,7 +56753,10 @@ "plasmid_name": "dpYPQ230-D156R-CBE2", "sequence-type": "addgene-full", "addgene_id": "195368", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "file": "data/addgene_plasmids/195368.addgene-full.gb" }, @@ -45049,7 +56765,10 @@ "plasmid_name": "pDONR223_SLC2A3_p.F88S", "sequence-type": "addgene-full", "addgene_id": "81473", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -45061,7 +56780,10 @@ "plasmid_name": "pDONR221-MFSD10_STOP", "sequence-type": "addgene-full", "addgene_id": "161056", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161056.addgene-full.gb" }, @@ -45070,7 +56792,6 @@ "plasmid_name": "HCP2", "sequence-type": "addgene-full", "addgene_id": "166104", - "references": [], "kit": null, "file": "data/addgene_plasmids/166104.addgene-full.gb" }, @@ -45079,7 +56800,10 @@ "plasmid_name": "actc1b-mKate2-Rab31", "sequence-type": "addgene-full", "addgene_id": "109763", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109763.addgene-full.gb" }, @@ -45088,7 +56812,10 @@ "plasmid_name": "pENTR4-Cas9-V5", "sequence-type": "addgene-full", "addgene_id": "87905", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87905.addgene-full.gb" }, @@ -45097,7 +56824,10 @@ "plasmid_name": "API5_pLX307", "sequence-type": "addgene-full", "addgene_id": "98315", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98315.addgene-full.gb" }, @@ -45106,7 +56836,6 @@ "plasmid_name": "R777-E100 Hs.GRB2-nostop", "sequence-type": "depositor-full", "addgene_id": "70384", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -45118,7 +56847,10 @@ "plasmid_name": "pLenti-EmGFP-LATS2/1 KD", "sequence-type": "addgene-full", "addgene_id": "52085", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.01346-13", + "https://www.ncbi.nlm.nih.gov/pubmed/24550007" + ], "kit": null, "file": "data/addgene_plasmids/52085.addgene-full.gb" }, @@ -45127,7 +56859,9 @@ "plasmid_name": "pDRFLIP36", "sequence-type": "depositor-full", "addgene_id": "65514", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65514.depositor-full.gb" }, @@ -45136,7 +56870,10 @@ "plasmid_name": "pBVboostFGII WPRE 3C-CVB3", "sequence-type": "addgene-full", "addgene_id": "202077", - "references": [], + "references": [ + "https://doi.org/10.1128/spectrum.05352-22", + "https://www.ncbi.nlm.nih.gov/pubmed/37227147" + ], "kit": null, "file": "data/addgene_plasmids/202077.addgene-full.gb" }, @@ -45145,7 +56882,10 @@ "plasmid_name": "pSGE_881_Nhe2_EcR-to-HLH4C", "sequence-type": "depositor-full", "addgene_id": "71186", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71186.depositor-full.gb" }, @@ -45154,7 +56894,10 @@ "plasmid_name": "pMuLE ENTR SV40 mCherry L5-L2", "sequence-type": "depositor-full", "addgene_id": "62149", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62149.depositor-full.gb" }, @@ -45163,7 +56906,10 @@ "plasmid_name": "pDONR223_AKT1_p.D323Y", "sequence-type": "addgene-full", "addgene_id": "82867", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82867.addgene-full.gb" }, @@ -45172,7 +56918,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep27", "sequence-type": "addgene-full", "addgene_id": "136809", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136809.addgene-full.gb" }, @@ -45181,7 +56930,10 @@ "plasmid_name": "pDONR\u2122221_RBPMS2", "sequence-type": "depositor-full", "addgene_id": "59389", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.045005.114", + "https://www.ncbi.nlm.nih.gov/pubmed/24860013" + ], "kit": null, "file": "data/addgene_plasmids/59389.depositor-full.gb" }, @@ -45190,7 +56942,10 @@ "plasmid_name": "pDONR221-SLC16A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161124", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161124.addgene-full.gb" }, @@ -45199,7 +56954,10 @@ "plasmid_name": "pDONR223_FAM173B_p.R187P", "sequence-type": "addgene-full", "addgene_id": "82748", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82748.addgene-full.gb" }, @@ -45208,7 +56966,10 @@ "plasmid_name": "pDONR223_KIF2B_p.R504Q", "sequence-type": "addgene-full", "addgene_id": "81501", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -45220,7 +56981,10 @@ "plasmid_name": "pEXPqcxip-hCCDC47-FLAG", "sequence-type": "addgene-full", "addgene_id": "159141", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2011.06.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21903422" + ], "kit": null, "file": "data/addgene_plasmids/159141.addgene-full.gb" }, @@ -45229,7 +56993,10 @@ "plasmid_name": "pDON223 Spike K417N", "sequence-type": "addgene-full", "addgene_id": "180060", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180060.addgene-full.gb" }, @@ -45238,7 +57005,10 @@ "plasmid_name": "actc1b-mKate2-rab22a", "sequence-type": "addgene-full", "addgene_id": "109611", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109611.addgene-full.gb" }, @@ -45247,7 +57017,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp10", "sequence-type": "depositor-full", "addgene_id": "168959", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168959.depositor-full.gb" }, @@ -45256,7 +57029,10 @@ "plasmid_name": "TFORF3405", "sequence-type": "addgene-full", "addgene_id": "144881", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144881.addgene-full.gb" }, @@ -45265,7 +57041,10 @@ "plasmid_name": "pAG423GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14150", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -45277,7 +57056,6 @@ "plasmid_name": "Hs.NRAS Q61R", "sequence-type": "depositor-full", "addgene_id": "83179", - "references": [], "kit": null, "file": "data/addgene_plasmids/83179.depositor-full.gb" }, @@ -45286,7 +57064,10 @@ "plasmid_name": "W118-1_hZBTB7B", "sequence-type": "addgene-full", "addgene_id": "180380", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "file": "data/addgene_plasmids/180380.addgene-full.gb" }, @@ -45295,7 +57076,10 @@ "plasmid_name": "pCFJ908", "sequence-type": "depositor-full", "addgene_id": "44474", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44474.depositor-full.gb" }, @@ -45304,7 +57088,10 @@ "plasmid_name": "pPN10-gCTG", "sequence-type": "addgene-full", "addgene_id": "114385", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms13272", + "https://www.ncbi.nlm.nih.gov/pubmed/27827362" + ], "kit": null, "file": "data/addgene_plasmids/114385.addgene-full.gb" }, @@ -45313,7 +57100,10 @@ "plasmid_name": "pDONR221-ZNF534", "sequence-type": "depositor-full", "addgene_id": "101449", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101449.depositor-full.gb" }, @@ -45322,7 +57112,10 @@ "plasmid_name": "pKG-GW2-MaUPPS-B", "sequence-type": "addgene-full", "addgene_id": "203175", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M117.806034", + "https://www.ncbi.nlm.nih.gov/pubmed/28842490" + ], "kit": null, "file": "data/addgene_plasmids/203175.addgene-full.gb" }, @@ -45331,7 +57124,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF8b_stop", "sequence-type": "addgene-full", "addgene_id": "168567", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168567.addgene-full.gb" }, @@ -45340,7 +57136,10 @@ "plasmid_name": "pLEX305_FKBP12F36V-SHOC2", "sequence-type": "addgene-full", "addgene_id": "134522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.08.090", + "https://www.ncbi.nlm.nih.gov/pubmed/31577942" + ], "kit": null, "file": "data/addgene_plasmids/134522.addgene-full.gb" }, @@ -45349,7 +57148,10 @@ "plasmid_name": "pHAGE-EGFR-H47Y", "sequence-type": "addgene-full", "addgene_id": "116261", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116261.addgene-full.gb" }, @@ -45358,7 +57160,10 @@ "plasmid_name": "TFORF3479", "sequence-type": "addgene-full", "addgene_id": "144955", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144955.addgene-full.gb" }, @@ -45367,7 +57172,10 @@ "plasmid_name": "R620-M05-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-541)-His6 K417N/E484K/N501Y", "sequence-type": "addgene-full", "addgene_id": "170191", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/170191.addgene-full.gb" }, @@ -45376,7 +57184,10 @@ "plasmid_name": "pDONR223_AKR1B1_WT", "sequence-type": "addgene-full", "addgene_id": "82928", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82928.addgene-full.gb" }, @@ -45385,7 +57196,10 @@ "plasmid_name": "JA001: pMVP (L3-L2) FLAG epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121758", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121758.addgene-full.gb" }, @@ -45394,7 +57208,9 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ashL344P-mKate2-splitmVenusN", "sequence-type": "depositor-full", "addgene_id": "69586", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "file": "data/addgene_plasmids/69586.depositor-full.gb" }, @@ -45403,7 +57219,10 @@ "plasmid_name": "pMuLE ENTR 7SK L5-L4", "sequence-type": "depositor-full", "addgene_id": "62107", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62107.depositor-full.gb" }, @@ -45412,7 +57231,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK8_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189877", - "references": [], "kit": null, "file": "data/addgene_plasmids/189877.addgene-full.gb" }, @@ -45421,7 +57239,10 @@ "plasmid_name": "pDONR223_MEF2C_WT", "sequence-type": "addgene-full", "addgene_id": "81735", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -45433,7 +57254,10 @@ "plasmid_name": "pCG144", "sequence-type": "depositor-full", "addgene_id": "21376", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21376.depositor-full.gb" }, @@ -45442,7 +57266,10 @@ "plasmid_name": "pDONR223_EDNRB_WT", "sequence-type": "addgene-full", "addgene_id": "81881", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -45454,7 +57281,10 @@ "plasmid_name": "p{Mhc-F4-678-GFP::KD-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182184", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182184.addgene-full.gb" }, @@ -45463,7 +57293,10 @@ "plasmid_name": "pDONR221-SLC35G2_STOP", "sequence-type": "addgene-full", "addgene_id": "161310", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161310.addgene-full.gb" }, @@ -45472,7 +57305,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp5", "sequence-type": "addgene-full", "addgene_id": "168933", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168933.addgene-full.gb" }, @@ -45481,7 +57317,10 @@ "plasmid_name": "pHAGE-BRAF-L613F", "sequence-type": "addgene-full", "addgene_id": "116181", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116181.addgene-full.gb" }, @@ -45490,7 +57329,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP1_nostop", "sequence-type": "addgene-full", "addgene_id": "168687", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168687.addgene-full.gb" }, @@ -45499,7 +57341,10 @@ "plasmid_name": "pLEX307-IBV-3CL-C143A", "sequence-type": "addgene-full", "addgene_id": "160289", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160289.addgene-full.gb" }, @@ -45508,7 +57353,10 @@ "plasmid_name": "pEX-CMV-SP-YFP-STM2(15-746AA)-EF hand 3 mut (K83A,D84N,G86D)", "sequence-type": "depositor-full", "addgene_id": "20174", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "file": "data/addgene_plasmids/20174.depositor-full.gb" }, @@ -45517,7 +57365,10 @@ "plasmid_name": "TFORF3025", "sequence-type": "addgene-full", "addgene_id": "144501", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144501.addgene-full.gb" }, @@ -45526,7 +57377,6 @@ "plasmid_name": "pHAGE pGK LysoFlux (HaloTag7-mGFP-Galectin3)", "sequence-type": "addgene-full", "addgene_id": "215009", - "references": [], "kit": null, "file": "data/addgene_plasmids/215009.addgene-full.gb" }, @@ -45535,7 +57385,10 @@ "plasmid_name": "mitoTALECD for_atp1_1397NC", "sequence-type": "addgene-full", "addgene_id": "186204", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2121177119", + "https://www.ncbi.nlm.nih.gov/pubmed/35561225" + ], "kit": null, "file": "data/addgene_plasmids/186204.addgene-full.gb" }, @@ -45544,7 +57397,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP14_nostop", "sequence-type": "addgene-full", "addgene_id": "149316", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149316.addgene-full.gb" }, @@ -45553,7 +57409,6 @@ "plasmid_name": "LO601: pMVP (R4-R3) destabilized firefly luciferase (Luc2P)", "sequence-type": "addgene-full", "addgene_id": "132926", - "references": [], "kit": null, "file": "data/addgene_plasmids/132926.addgene-full.gb" }, @@ -45562,7 +57417,10 @@ "plasmid_name": "pCZGY2839", "sequence-type": "addgene-full", "addgene_id": "87765", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/87765.addgene-full.gb" }, @@ -45571,7 +57429,10 @@ "plasmid_name": "LC301: pMVP/PB/Zeo-DEST", "sequence-type": "addgene-full", "addgene_id": "121877", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121877.addgene-full.gb" }, @@ -45580,7 +57441,6 @@ "plasmid_name": "Hs.KRAS4b S181D", "sequence-type": "depositor-full", "addgene_id": "83137", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -45592,7 +57452,9 @@ "plasmid_name": "pAG416GAL-ccdB-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166139", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166139.addgene-full.gb" }, @@ -45601,7 +57463,9 @@ "plasmid_name": "pMpGWB125", "sequence-type": "depositor-full", "addgene_id": "68579", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68579.depositor-full.gb" }, @@ -45610,7 +57474,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a O", "sequence-type": "addgene-full", "addgene_id": "89384", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89384.addgene-full.gb" }, @@ -45619,7 +57486,9 @@ "plasmid_name": "pMpGWB304", "sequence-type": "depositor-full", "addgene_id": "68632", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68632.depositor-full.gb" }, @@ -45628,7 +57497,10 @@ "plasmid_name": "mKate2-P2A-APEX2-ML1N*2", "sequence-type": "depositor-full", "addgene_id": "67665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67665.depositor-full.gb" }, @@ -45637,7 +57509,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF10wu", "sequence-type": "addgene-full", "addgene_id": "149332", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149332.addgene-full.gb" }, @@ -45646,7 +57521,10 @@ "plasmid_name": "LOC5578735 SIFa receptor", "sequence-type": "addgene-full", "addgene_id": "115377", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115377.addgene-full.gb" }, @@ -45655,7 +57533,10 @@ "plasmid_name": "pUBQ10:LLFLS2-1", "sequence-type": "addgene-full", "addgene_id": "202187", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "file": "data/addgene_plasmids/202187.addgene-full.gb" }, @@ -45664,7 +57545,10 @@ "plasmid_name": "907K", "sequence-type": "addgene-full", "addgene_id": "160236", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160236.addgene-full.gb" }, @@ -45673,7 +57557,10 @@ "plasmid_name": "pAG304GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14255", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -45685,7 +57572,6 @@ "plasmid_name": "pENTRY4_ OBfold", "sequence-type": "addgene-full", "addgene_id": "126901", - "references": [], "kit": null, "file": "data/addgene_plasmids/126901.addgene-full.gb" }, @@ -45694,7 +57580,10 @@ "plasmid_name": "pDONR223_GTF2A2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82997", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82997.addgene-full.gb" }, @@ -45703,7 +57592,10 @@ "plasmid_name": "JL202: pMVP/mCherry-DEST", "sequence-type": "addgene-full", "addgene_id": "121853", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121853.addgene-full.gb" }, @@ -45712,7 +57604,10 @@ "plasmid_name": "dpYPQ230-D156R-ABE5", "sequence-type": "addgene-full", "addgene_id": "195371", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2023.100601", + "https://www.ncbi.nlm.nih.gov/pubmed/37060177" + ], "kit": null, "file": "data/addgene_plasmids/195371.addgene-full.gb" }, @@ -45721,7 +57616,10 @@ "plasmid_name": "pENTR-TMEM144", "sequence-type": "addgene-full", "addgene_id": "221426", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221426.addgene-full.gb" }, @@ -45730,7 +57628,10 @@ "plasmid_name": "pDONR 221-BPC4 (STOP)", "sequence-type": "addgene-full", "addgene_id": "118680", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118680.addgene-full.gb" }, @@ -45739,7 +57640,10 @@ "plasmid_name": "p7274 MSCV-P C-FlagHA 16 \u2206DLYC", "sequence-type": "addgene-full", "addgene_id": "163304", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1819534116", + "https://www.ncbi.nlm.nih.gov/pubmed/30894485" + ], "kit": null, "file": "data/addgene_plasmids/163304.addgene-full.gb" }, @@ -45748,7 +57652,9 @@ "plasmid_name": "pDONR221-MARK4(v2)", "sequence-type": "addgene-full", "addgene_id": "166186", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166186.addgene-full.gb" }, @@ -45757,7 +57663,10 @@ "plasmid_name": "TFORF3495", "sequence-type": "addgene-full", "addgene_id": "144971", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144971.addgene-full.gb" }, @@ -45766,7 +57675,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-2", "sequence-type": "depositor-full", "addgene_id": "46705", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46705.depositor-full.gb" }, @@ -45775,7 +57687,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp8", "sequence-type": "addgene-full", "addgene_id": "168917", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168917.addgene-full.gb" }, @@ -45784,7 +57699,10 @@ "plasmid_name": "pME-2PH-PLCd", "sequence-type": "depositor-full", "addgene_id": "71283", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/71283.depositor-full.gb" }, @@ -45793,7 +57711,10 @@ "plasmid_name": "TFORF3049", "sequence-type": "addgene-full", "addgene_id": "144525", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144525.addgene-full.gb" }, @@ -45802,7 +57723,10 @@ "plasmid_name": "pAM102", "sequence-type": "addgene-full", "addgene_id": "226694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226694.addgene-full.gb" }, @@ -45811,7 +57735,10 @@ "plasmid_name": "CDC40", "sequence-type": "addgene-full", "addgene_id": "155444", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155444.addgene-full.gb" }, @@ -45820,7 +57747,10 @@ "plasmid_name": "pDONR223_MTM1_p.D298E", "sequence-type": "addgene-full", "addgene_id": "81711", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -45832,7 +57762,10 @@ "plasmid_name": "pCLX-UBI-mCherry", "sequence-type": "addgene-full", "addgene_id": "114275", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.01.061", + "https://www.ncbi.nlm.nih.gov/pubmed/25732825" + ], "kit": null, "file": "data/addgene_plasmids/114275.addgene-full.gb" }, @@ -45841,7 +57774,10 @@ "plasmid_name": "pCXLE-gw", "sequence-type": "depositor-full", "addgene_id": "37626", - "references": [], + "references": [ + "https://doi.org/10.1002/stem.1293", + "https://www.ncbi.nlm.nih.gov/pubmed/23193063" + ], "kit": null, "file": "data/addgene_plasmids/37626.depositor-full.gb" }, @@ -45850,7 +57786,9 @@ "plasmid_name": "p5E 5X C120 c-fos min pro (JDW 1241)", "sequence-type": "addgene-full", "addgene_id": "224544", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224544.addgene-full.gb" }, @@ -45859,7 +57797,10 @@ "plasmid_name": "pSLIK_neo_3xflag_CHEK2", "sequence-type": "addgene-full", "addgene_id": "136536", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136536.addgene-full.gb" }, @@ -45868,7 +57809,10 @@ "plasmid_name": "HSPB1", "sequence-type": "addgene-full", "addgene_id": "155670", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155670.addgene-full.gb" }, @@ -45877,7 +57821,10 @@ "plasmid_name": "TFORF3235", "sequence-type": "addgene-full", "addgene_id": "144711", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144711.addgene-full.gb" }, @@ -45886,7 +57833,10 @@ "plasmid_name": "pENTR1A_Mavs (open)", "sequence-type": "addgene-full", "addgene_id": "160099", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160099.addgene-full.gb" }, @@ -45895,7 +57845,10 @@ "plasmid_name": "actc1b-mKate2-rab3aa", "sequence-type": "addgene-full", "addgene_id": "109635", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109635.addgene-full.gb" }, @@ -45904,7 +57857,10 @@ "plasmid_name": "pHAGE-FGFR4-K157N", "sequence-type": "addgene-full", "addgene_id": "116391", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116391.addgene-full.gb" }, @@ -45913,7 +57869,10 @@ "plasmid_name": "pDONR221-SLC16A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161100", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161100.addgene-full.gb" }, @@ -45922,7 +57881,10 @@ "plasmid_name": "pDONR223_KEAP1_p.T142M", "sequence-type": "addgene-full", "addgene_id": "81525", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -45934,7 +57896,10 @@ "plasmid_name": "pENTR4_TIAL1", "sequence-type": "addgene-full", "addgene_id": "106089", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106089.addgene-full.gb" }, @@ -45943,7 +57908,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP10", "sequence-type": "addgene-full", "addgene_id": "154409", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154409.addgene-full.gb" }, @@ -45952,7 +57920,9 @@ "plasmid_name": "pME_Golgi-BFP_P2A_H2A_iRFP (JDW 1007)", "sequence-type": "addgene-full", "addgene_id": "224490", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224490.addgene-full.gb" }, @@ -45961,7 +57931,10 @@ "plasmid_name": "pENTR D-TOPO-C3_34", "sequence-type": "depositor-full", "addgene_id": "60276", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60276.depositor-full.gb" }, @@ -45970,7 +57943,10 @@ "plasmid_name": "pGWT35S-AtTIM21(1-50aa)-mCherry", "sequence-type": "addgene-full", "addgene_id": "194047", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "file": "data/addgene_plasmids/194047.addgene-full.gb" }, @@ -45979,7 +57955,6 @@ "plasmid_name": "pAM-35s-CIPK5-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102392", - "references": [], "kit": null, "file": "data/addgene_plasmids/102392.addgene-full.gb" }, @@ -45988,7 +57963,10 @@ "plasmid_name": "EXOSC2", "sequence-type": "addgene-full", "addgene_id": "155590", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155590.addgene-full.gb" }, @@ -45997,7 +57975,10 @@ "plasmid_name": "pLenti CMV Hygro dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134732", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "file": "data/addgene_plasmids/134732.addgene-full.gb" }, @@ -46006,7 +57987,10 @@ "plasmid_name": "pMLS713", "sequence-type": "addgene-full", "addgene_id": "188885", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "file": "data/addgene_plasmids/188885.addgene-full.gb" }, @@ -46015,7 +57999,10 @@ "plasmid_name": "pYPQ265N2", "sequence-type": "addgene-full", "addgene_id": "174001", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "file": "data/addgene_plasmids/174001.addgene-full.gb" }, @@ -46024,7 +58011,10 @@ "plasmid_name": "BAF-S4D-tet-puro", "sequence-type": "addgene-full", "addgene_id": "199650", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "file": "data/addgene_plasmids/199650.addgene-full.gb" }, @@ -46033,7 +58023,10 @@ "plasmid_name": "HS-GFP-PACT", "sequence-type": "depositor-full", "addgene_id": "105954", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25600237" + ], "kit": null, "file": "data/addgene_plasmids/105954.depositor-full.gb" }, @@ -46042,7 +58035,10 @@ "plasmid_name": "DDX39B_pLX307", "sequence-type": "addgene-full", "addgene_id": "98331", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98331.addgene-full.gb" }, @@ -46051,7 +58047,10 @@ "plasmid_name": "pEBTet-SNAP-\u03b3-tubulin", "sequence-type": "addgene-full", "addgene_id": "136799", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136799.addgene-full.gb" }, @@ -46060,7 +58059,10 @@ "plasmid_name": "pDestTol2-ubi-ASAP1", "sequence-type": "addgene-full", "addgene_id": "121987", - "references": [], + "references": [ + "https://doi.org/10.3791/57330", + "https://www.ncbi.nlm.nih.gov/pubmed/29757272" + ], "kit": null, "file": "data/addgene_plasmids/121987.addgene-full.gb" }, @@ -46069,7 +58071,6 @@ "plasmid_name": "pDEST27-GST-hSFRP1(aa181-314)", "sequence-type": "addgene-full", "addgene_id": "189548", - "references": [], "kit": null, "file": "data/addgene_plasmids/189548.addgene-full.gb" }, @@ -46078,7 +58079,10 @@ "plasmid_name": "pDONR223_EGFR_p.K754E", "sequence-type": "addgene-full", "addgene_id": "82843", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82843.addgene-full.gb" }, @@ -46087,7 +58091,10 @@ "plasmid_name": "pME-H2B", "sequence-type": "addgene-full", "addgene_id": "108883", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "file": "data/addgene_plasmids/108883.addgene-full.gb" }, @@ -46096,7 +58103,10 @@ "plasmid_name": "pDONR223-ZNF544", "sequence-type": "addgene-full", "addgene_id": "88029", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88029.addgene-full.gb" }, @@ -46105,7 +58115,10 @@ "plasmid_name": "pDONR223_RIMS2_WT", "sequence-type": "addgene-full", "addgene_id": "81803", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -46117,7 +58130,10 @@ "plasmid_name": "pLenti-PGK-EGFPc3-Neo", "sequence-type": "addgene-full", "addgene_id": "189741", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "file": "data/addgene_plasmids/189741.addgene-full.gb" }, @@ -46126,7 +58142,10 @@ "plasmid_name": "pE2c", "sequence-type": "addgene-full", "addgene_id": "17462", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17462.addgene-full.gb" }, @@ -46135,7 +58154,10 @@ "plasmid_name": "pMuLE ENTR SFFV tdTomato L5-L2", "sequence-type": "depositor-full", "addgene_id": "62155", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62155.depositor-full.gb" }, @@ -46144,7 +58166,6 @@ "plasmid_name": "R777-E118 Hs.KSR1-nostop", "sequence-type": "depositor-full", "addgene_id": "70402", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -46156,7 +58177,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 N2_stop", "sequence-type": "addgene-full", "addgene_id": "168605", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168605.addgene-full.gb" }, @@ -46165,7 +58189,6 @@ "plasmid_name": "pLenti UBC MitoFlux (pSu9-HaloTag7-mGFP-STOP)", "sequence-type": "addgene-full", "addgene_id": "215010", - "references": [], "kit": null, "file": "data/addgene_plasmids/215010.addgene-full.gb" }, @@ -46174,7 +58197,10 @@ "plasmid_name": "pDEST17-UbE2R2", "sequence-type": "addgene-full", "addgene_id": "15806", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "file": "data/addgene_plasmids/15806.addgene-full.gb" }, @@ -46183,7 +58209,10 @@ "plasmid_name": "plenti-px330-CRBN-T1-pGK-Pur", "sequence-type": "addgene-full", "addgene_id": "107382", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107382.addgene-full.gb" }, @@ -46192,7 +58221,10 @@ "plasmid_name": "TFORF3187", "sequence-type": "addgene-full", "addgene_id": "144663", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144663.addgene-full.gb" }, @@ -46201,7 +58233,10 @@ "plasmid_name": "pLX304 ERG R367K", "sequence-type": "addgene-full", "addgene_id": "118626", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.06.040", + "https://www.ncbi.nlm.nih.gov/pubmed/30078722" + ], "kit": null, "file": "data/addgene_plasmids/118626.addgene-full.gb" }, @@ -46210,7 +58245,6 @@ "plasmid_name": "R777-E114 Hs.JUN-nostop", "sequence-type": "depositor-full", "addgene_id": "70398", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -46222,7 +58256,10 @@ "plasmid_name": "pDONR221_SLC12A1", "sequence-type": "addgene-full", "addgene_id": "131896", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131896.addgene-full.gb" }, @@ -46231,7 +58268,10 @@ "plasmid_name": "pDONR223_KPNA3_p.V154G", "sequence-type": "addgene-full", "addgene_id": "81457", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -46243,7 +58283,10 @@ "plasmid_name": "pDONR221-SLC2A10_STOP", "sequence-type": "depositor-full", "addgene_id": "161257", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161257.depositor-full.gb" }, @@ -46252,7 +58295,10 @@ "plasmid_name": "370 pTol2-lmo2:CherryDest", "sequence-type": "depositor-full", "addgene_id": "73489", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/73489.depositor-full.gb" }, @@ -46261,7 +58307,10 @@ "plasmid_name": "pJG85", "sequence-type": "depositor-full", "addgene_id": "89281", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.13446", + "https://www.ncbi.nlm.nih.gov/pubmed/27943461" + ], "kit": null, "file": "data/addgene_plasmids/89281.depositor-full.gb" }, @@ -46270,7 +58319,9 @@ "plasmid_name": "p3E-Dam-myc no-pA", "sequence-type": "depositor-full", "addgene_id": "82600", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82600.depositor-full.gb" }, @@ -46279,7 +58330,10 @@ "plasmid_name": "IKKalpha (S176E,S180E)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64608", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/64608.addgene-full.gb" }, @@ -46288,7 +58342,6 @@ "plasmid_name": "Hs.KRAS4b G12D/C185S", "sequence-type": "depositor-full", "addgene_id": "83165", - "references": [], "kit": null, "file": "data/addgene_plasmids/83165.depositor-full.gb" }, @@ -46297,7 +58350,10 @@ "plasmid_name": "JN402: pMVP (R4-R3) Firefly Luciferase", "sequence-type": "addgene-full", "addgene_id": "121741", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121741.addgene-full.gb" }, @@ -46306,7 +58362,10 @@ "plasmid_name": "pDONR223_SHC1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82931", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82931.addgene-full.gb" }, @@ -46315,7 +58374,10 @@ "plasmid_name": "R620-M01-303: CMV51p> SARS-CoV-2 S(1-1208)-2P-T4f-3C-His8-Strep2x2 B.1.1.7", "sequence-type": "addgene-full", "addgene_id": "170188", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/170188.addgene-full.gb" }, @@ -46324,7 +58386,10 @@ "plasmid_name": "pHAGE-EGFR-M178I", "sequence-type": "addgene-full", "addgene_id": "116278", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116278.addgene-full.gb" }, @@ -46333,7 +58398,10 @@ "plasmid_name": "TFORF3042", "sequence-type": "addgene-full", "addgene_id": "144518", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144518.addgene-full.gb" }, @@ -46342,7 +58410,10 @@ "plasmid_name": "pCM5.41", "sequence-type": "depositor-full", "addgene_id": "19392", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19392.depositor-full.gb" }, @@ -46351,7 +58422,10 @@ "plasmid_name": "CPSF4L", "sequence-type": "addgene-full", "addgene_id": "155479", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155479.addgene-full.gb" }, @@ -46360,7 +58434,10 @@ "plasmid_name": "pHAGE-BRAF-V600Ifs*13", "sequence-type": "addgene-full", "addgene_id": "116198", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116198.addgene-full.gb" }, @@ -46369,7 +58446,10 @@ "plasmid_name": "pBullet-tgn-n", "sequence-type": "depositor-full", "addgene_id": "53071", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53071.depositor-full.gb" }, @@ -46378,7 +58458,10 @@ "plasmid_name": "A1-LCD+2R", "sequence-type": "addgene-full", "addgene_id": "178666", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178666.addgene-full.gb" }, @@ -46387,7 +58470,10 @@ "plasmid_name": "pDONR223_ARSI_WT", "sequence-type": "addgene-full", "addgene_id": "81898", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -46399,7 +58485,10 @@ "plasmid_name": "pDONR221-SLC36A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161309", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161309.addgene-full.gb" }, @@ -46408,7 +58497,10 @@ "plasmid_name": "pEntry_HCoV-OC43-Envelope", "sequence-type": "depositor-full", "addgene_id": "168945", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168945.depositor-full.gb" }, @@ -46417,7 +58509,10 @@ "plasmid_name": "TFORF3422", "sequence-type": "addgene-full", "addgene_id": "144898", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144898.addgene-full.gb" }, @@ -46426,7 +58521,10 @@ "plasmid_name": "JDW 832 (pDONR221-V5-mTagBFP2-KRAS4A-G12D)", "sequence-type": "addgene-full", "addgene_id": "156404", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156404.addgene-full.gb" }, @@ -46435,7 +58533,10 @@ "plasmid_name": "actc1b-mKate2-rab1bb", "sequence-type": "addgene-full", "addgene_id": "109608", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109608.addgene-full.gb" }, @@ -46444,7 +58545,10 @@ "plasmid_name": "pEN_TT 3XFLAG-wtGATA6-3XAU1_RNAi resistant", "sequence-type": "depositor-full", "addgene_id": "72922", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "file": "data/addgene_plasmids/72922.depositor-full.gb" }, @@ -46453,7 +58557,10 @@ "plasmid_name": "pDONR223_STK11_p.L245F", "sequence-type": "addgene-full", "addgene_id": "82751", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82751.addgene-full.gb" }, @@ -46462,7 +58569,10 @@ "plasmid_name": "LF601: pMVP (L1-R5) TBG promoter", "sequence-type": "addgene-full", "addgene_id": "121695", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121695.addgene-full.gb" }, @@ -46471,7 +58581,10 @@ "plasmid_name": "pDONR223_NFE2L2_p.G31V", "sequence-type": "addgene-full", "addgene_id": "81518", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -46483,7 +58596,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND E274R", "sequence-type": "addgene-full", "addgene_id": "169967", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169967.addgene-full.gb" }, @@ -46492,7 +58608,10 @@ "plasmid_name": "pCMB-TPr", "sequence-type": "depositor-full", "addgene_id": "61190", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61190.depositor-full.gb" }, @@ -46501,7 +58620,10 @@ "plasmid_name": "p3E-Dnm2b", "sequence-type": "addgene-full", "addgene_id": "109573", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109573.addgene-full.gb" }, @@ -46510,7 +58632,10 @@ "plasmid_name": "TFORF2981", "sequence-type": "addgene-full", "addgene_id": "144457", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144457.addgene-full.gb" }, @@ -46519,7 +58644,10 @@ "plasmid_name": "p3E-TAPP1-PH", "sequence-type": "addgene-full", "addgene_id": "67675", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67675.addgene-full.gb" }, @@ -46528,7 +58656,10 @@ "plasmid_name": "pAC150-KEIMA-VAPA", "sequence-type": "addgene-full", "addgene_id": "212096", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "file": "data/addgene_plasmids/212096.addgene-full.gb" }, @@ -46537,7 +58668,10 @@ "plasmid_name": "pDONR221-SLC28A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161246", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161246.addgene-full.gb" }, @@ -46546,7 +58680,10 @@ "plasmid_name": "pLXI_TRC403 SMARCB1 var 2", "sequence-type": "addgene-full", "addgene_id": "111185", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.44161", + "https://www.ncbi.nlm.nih.gov/pubmed/30860482" + ], "kit": null, "file": "data/addgene_plasmids/111185.addgene-full.gb" }, @@ -46555,7 +58692,9 @@ "plasmid_name": "pMpGWB111", "sequence-type": "depositor-full", "addgene_id": "68565", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68565.depositor-full.gb" }, @@ -46564,7 +58703,10 @@ "plasmid_name": "pCLXEBR-pTF-Ngn3", "sequence-type": "addgene-full", "addgene_id": "114307", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "file": "data/addgene_plasmids/114307.addgene-full.gb" }, @@ -46573,7 +58715,6 @@ "plasmid_name": "pDEST26-NAT1-C-HA", "sequence-type": "addgene-full", "addgene_id": "195178", - "references": [], "kit": null, "file": "data/addgene_plasmids/195178.addgene-full.gb" }, @@ -46582,7 +58723,10 @@ "plasmid_name": "pDONR223_HTR4_p.Y129H", "sequence-type": "addgene-full", "addgene_id": "81663", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -46594,7 +58738,10 @@ "plasmid_name": "pDONR223_FBXW7_p.S462Y", "sequence-type": "addgene-full", "addgene_id": "81583", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -46606,7 +58753,10 @@ "plasmid_name": "pEBTet-SNAP-KIAA0841", "sequence-type": "addgene-full", "addgene_id": "136810", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136810.addgene-full.gb" }, @@ -46615,7 +58765,10 @@ "plasmid_name": "pLenti-CMVSP6-NR2F2-SV40-PURO", "sequence-type": "addgene-full", "addgene_id": "138361", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138361.addgene-full.gb" }, @@ -46624,7 +58777,10 @@ "plasmid_name": "MiniCoopR mitfa:BRAF", "sequence-type": "addgene-full", "addgene_id": "118846", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118846.addgene-full.gb" }, @@ -46633,7 +58789,10 @@ "plasmid_name": "TFORF3327", "sequence-type": "addgene-full", "addgene_id": "144803", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144803.addgene-full.gb" }, @@ -46642,7 +58801,10 @@ "plasmid_name": "p3E-rab34a", "sequence-type": "addgene-full", "addgene_id": "109693", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109693.addgene-full.gb" }, @@ -46651,7 +58813,10 @@ "plasmid_name": "pcDNA3.2/NS4B", "sequence-type": "addgene-full", "addgene_id": "120823", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120823.addgene-full.gb" }, @@ -46660,7 +58825,10 @@ "plasmid_name": "pDONR221_MTCH1", "sequence-type": "addgene-full", "addgene_id": "131942", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131942.addgene-full.gb" }, @@ -46669,7 +58837,10 @@ "plasmid_name": "pdRBFC-NS1-YC", "sequence-type": "addgene-full", "addgene_id": "74724", - "references": [], + "references": [ + "https://doi.org/10.1016/j.virol.2015.08.023", + "https://www.ncbi.nlm.nih.gov/pubmed/26351203" + ], "kit": null, "file": "data/addgene_plasmids/74724.addgene-full.gb" }, @@ -46678,7 +58849,10 @@ "plasmid_name": "pAFMW-AthHEN1-CM", "sequence-type": "addgene-full", "addgene_id": "104981", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4610", + "https://www.ncbi.nlm.nih.gov/pubmed/29481550" + ], "kit": null, "file": "data/addgene_plasmids/104981.addgene-full.gb" }, @@ -46687,7 +58861,10 @@ "plasmid_name": "pDONR221-NPC1", "sequence-type": "addgene-full", "addgene_id": "132295", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132295.addgene-full.gb" }, @@ -46696,7 +58873,10 @@ "plasmid_name": "GLI1_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176992", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176992.addgene-full.gb" }, @@ -46705,7 +58885,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP8", "sequence-type": "addgene-full", "addgene_id": "169382", - "references": [], "kit": null, "file": "data/addgene_plasmids/169382.addgene-full.gb" }, @@ -46714,7 +58893,6 @@ "plasmid_name": "R777-E294 Hs.RPS6KA3-nostop", "sequence-type": "depositor-full", "addgene_id": "70578", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -46726,7 +58904,6 @@ "plasmid_name": "p5'Entry-lck-5.5kb", "sequence-type": "depositor-full", "addgene_id": "58890", - "references": [], "kit": null, "file": "data/addgene_plasmids/58890.depositor-full.gb" }, @@ -46735,7 +58912,10 @@ "plasmid_name": "pMEmafbbP1gfp", "sequence-type": "addgene-full", "addgene_id": "90128", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90128.addgene-full.gb" }, @@ -46744,7 +58924,10 @@ "plasmid_name": "Flag-HA-USP22", "sequence-type": "addgene-full", "addgene_id": "22575", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22575.addgene-full.gb" }, @@ -46753,7 +58936,10 @@ "plasmid_name": "pENTR1A mKate2-hu_ncOGT 5N5A", "sequence-type": "addgene-full", "addgene_id": "154285", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154285.addgene-full.gb" }, @@ -46762,7 +58948,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(WT)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128653", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128653.addgene-full.gb" }, @@ -46771,7 +58960,10 @@ "plasmid_name": "pDONR221_SLC9A6", "sequence-type": "addgene-full", "addgene_id": "132175", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132175.addgene-full.gb" }, @@ -46780,7 +58972,10 @@ "plasmid_name": "pDR-meptrac-H194E", "sequence-type": "depositor-full", "addgene_id": "47764", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.00800", + "https://www.ncbi.nlm.nih.gov/pubmed/23840931" + ], "kit": null, "file": "data/addgene_plasmids/47764.depositor-full.gb" }, @@ -46789,7 +58984,10 @@ "plasmid_name": "pHAGE-RET-E901K", "sequence-type": "addgene-full", "addgene_id": "116666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116666.addgene-full.gb" }, @@ -46798,7 +58996,10 @@ "plasmid_name": "pDONR-P5P4", "sequence-type": "addgene-full", "addgene_id": "141064", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141064.addgene-full.gb" }, @@ -46807,7 +59008,10 @@ "plasmid_name": "pDONR-IAA3", "sequence-type": "depositor-full", "addgene_id": "83862", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83862.depositor-full.gb" }, @@ -46816,7 +59020,10 @@ "plasmid_name": "pDESTmycDDX17", "sequence-type": "addgene-full", "addgene_id": "19876", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19876.addgene-full.gb" }, @@ -46825,7 +59032,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PDIK1L_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170596", - "references": [], "kit": null, "file": "data/addgene_plasmids/170596.addgene-full.gb" }, @@ -46834,7 +59040,10 @@ "plasmid_name": "pDONR 223 VPS4A", "sequence-type": "addgene-full", "addgene_id": "169319", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.108493", + "https://www.ncbi.nlm.nih.gov/pubmed/33326793" + ], "kit": null, "file": "data/addgene_plasmids/169319.addgene-full.gb" }, @@ -46843,7 +59052,10 @@ "plasmid_name": "pGWT35S-Citrine-NLS", "sequence-type": "addgene-full", "addgene_id": "182583", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "file": "data/addgene_plasmids/182583.addgene-full.gb" }, @@ -46852,7 +59064,10 @@ "plasmid_name": "pDNR-gRNA", "sequence-type": "addgene-full", "addgene_id": "206990", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg8771", + "https://www.ncbi.nlm.nih.gov/pubmed/38691600" + ], "kit": null, "file": "data/addgene_plasmids/206990.addgene-full.gb" }, @@ -46861,7 +59076,10 @@ "plasmid_name": "pDONR223_GZMA_p.H38N", "sequence-type": "addgene-full", "addgene_id": "81332", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -46873,7 +59091,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NRF1", "sequence-type": "addgene-full", "addgene_id": "207809", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207809.addgene-full.gb" }, @@ -46882,7 +59103,10 @@ "plasmid_name": "pGW-GOI-TurboID", "sequence-type": "addgene-full", "addgene_id": "209378", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "file": "data/addgene_plasmids/209378.addgene-full.gb" }, @@ -46891,7 +59115,10 @@ "plasmid_name": "pHAGE-PIK3R1-E160*", "sequence-type": "addgene-full", "addgene_id": "116586", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116586.addgene-full.gb" }, @@ -46900,7 +59127,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aac", "sequence-type": "addgene-full", "addgene_id": "129685", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129685.addgene-full.gb" }, @@ -46909,7 +59139,10 @@ "plasmid_name": "R989-X05-566: His6-MBP-tev-G-Hs.KRAS4b(1-188)", "sequence-type": "addgene-full", "addgene_id": "159546", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159546.addgene-full.gb" }, @@ -46918,7 +59151,10 @@ "plasmid_name": "pHAGE-3FLAG-RAB11A", "sequence-type": "addgene-full", "addgene_id": "176489", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "file": "data/addgene_plasmids/176489.addgene-full.gb" }, @@ -46927,7 +59163,9 @@ "plasmid_name": "pLenti Lifeact-mRuby2 BlastR", "sequence-type": "addgene-full", "addgene_id": "84384", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30263951" + ], "kit": null, "file": "data/addgene_plasmids/84384.addgene-full.gb" }, @@ -46936,7 +59174,10 @@ "plasmid_name": "pYPQ262-ABE8e", "sequence-type": "addgene-full", "addgene_id": "161523", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-00827-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33398158" + ], "kit": null, "file": "data/addgene_plasmids/161523.addgene-full.gb" }, @@ -46945,7 +59186,6 @@ "plasmid_name": "R777-E252 Hs.RASSF1-nostop", "sequence-type": "depositor-full", "addgene_id": "70536", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -46957,7 +59197,10 @@ "plasmid_name": "pAG413GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14285", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -46969,7 +59212,10 @@ "plasmid_name": "pHAGE-AKAP13__RET", "sequence-type": "addgene-full", "addgene_id": "116806", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116806.addgene-full.gb" }, @@ -46978,7 +59224,10 @@ "plasmid_name": "pENTR-KAT14-1-546", "sequence-type": "addgene-full", "addgene_id": "118377", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118377.addgene-full.gb" }, @@ -46987,7 +59236,10 @@ "plasmid_name": "pDR-GW AT1.03YEMK", "sequence-type": "addgene-full", "addgene_id": "28004", - "references": [], + "references": [ + "https://doi.org/10.1042/BJ20100946", + "https://www.ncbi.nlm.nih.gov/pubmed/20854260" + ], "kit": null, "file": "data/addgene_plasmids/28004.addgene-full.gb" }, @@ -46996,7 +59248,10 @@ "plasmid_name": "dTAG NLRP1", "sequence-type": "addgene-full", "addgene_id": "166825", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166825.addgene-full.gb" }, @@ -47005,7 +59260,10 @@ "plasmid_name": "pHAGE-PDGFRA-V561D", "sequence-type": "addgene-full", "addgene_id": "116452", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116452.addgene-full.gb" }, @@ -47014,7 +59272,10 @@ "plasmid_name": "ath5:mKate2-aPKC-CAAX", "sequence-type": "addgene-full", "addgene_id": "105957", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105957.addgene-full.gb" }, @@ -47023,7 +59284,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-HNRNPR", "sequence-type": "addgene-full", "addgene_id": "38067", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38067.addgene-full.gb" }, @@ -47032,7 +59296,6 @@ "plasmid_name": "p3E p2a-turquoise2", "sequence-type": "addgene-full", "addgene_id": "135213", - "references": [], "kit": null, "file": "data/addgene_plasmids/135213.addgene-full.gb" }, @@ -47041,7 +59304,10 @@ "plasmid_name": "pDestTol2pACryGFP", "sequence-type": "addgene-full", "addgene_id": "64022", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22385", + "https://www.ncbi.nlm.nih.gov/pubmed/23444339" + ], "kit": null, "file": "data/addgene_plasmids/64022.addgene-full.gb" }, @@ -47050,7 +59316,6 @@ "plasmid_name": "IDG_TMEM38B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161658", - "references": [], "kit": null, "file": "data/addgene_plasmids/161658.addgene-full.gb" }, @@ -47059,7 +59324,10 @@ "plasmid_name": "pLenti-HRE-dUnaG", "sequence-type": "addgene-full", "addgene_id": "124372", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2023.06.017", + "https://www.ncbi.nlm.nih.gov/pubmed/37451265" + ], "kit": null, "file": "data/addgene_plasmids/124372.addgene-full.gb" }, @@ -47068,7 +59336,10 @@ "plasmid_name": "pRU206", "sequence-type": "addgene-full", "addgene_id": "167693", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167693.addgene-full.gb" }, @@ -47077,7 +59348,9 @@ "plasmid_name": "pCK122 pDESTattB_exorh:mCherry", "sequence-type": "addgene-full", "addgene_id": "213511", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.12.08.570868" + ], "kit": null, "file": "data/addgene_plasmids/213511.addgene-full.gb" }, @@ -47086,7 +59359,10 @@ "plasmid_name": "pMx/ATP11C-HA", "sequence-type": "addgene-full", "addgene_id": "209237", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209237.addgene-full.gb" }, @@ -47095,7 +59371,10 @@ "plasmid_name": "pTW086M", "sequence-type": "addgene-full", "addgene_id": "115934", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115934.addgene-full.gb" }, @@ -47104,7 +59383,10 @@ "plasmid_name": "S1_AscI_V5-gateway_Bsu36I", "sequence-type": "addgene-full", "addgene_id": "128467", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "file": "data/addgene_plasmids/128467.addgene-full.gb" }, @@ -47113,7 +59395,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp8", "sequence-type": "depositor-full", "addgene_id": "168871", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168871.depositor-full.gb" }, @@ -47122,7 +59407,10 @@ "plasmid_name": "pLIX403_Capture1_APOBEC_HA_P2A_mRuby", "sequence-type": "addgene-full", "addgene_id": "183901", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-021-01128-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33963355" + ], "kit": null, "file": "data/addgene_plasmids/183901.addgene-full.gb" }, @@ -47131,7 +59419,10 @@ "plasmid_name": "pHAGE-DDR2", "sequence-type": "addgene-full", "addgene_id": "116729", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116729.addgene-full.gb" }, @@ -47140,7 +59431,6 @@ "plasmid_name": "pDONR221-CTSL", "sequence-type": "addgene-full", "addgene_id": "158444", - "references": [], "kit": null, "file": "data/addgene_plasmids/158444.addgene-full.gb" }, @@ -47149,7 +59439,10 @@ "plasmid_name": "THOC1", "sequence-type": "addgene-full", "addgene_id": "156081", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156081.addgene-full.gb" }, @@ -47158,7 +59451,10 @@ "plasmid_name": "pYPQ-Cas12j2", "sequence-type": "addgene-full", "addgene_id": "173924", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2022.100453", + "https://www.ncbi.nlm.nih.gov/pubmed/36127876" + ], "kit": null, "file": "data/addgene_plasmids/173924.addgene-full.gb" }, @@ -47167,7 +59463,10 @@ "plasmid_name": "pHAGE-PIK3CA-P366R", "sequence-type": "addgene-full", "addgene_id": "116520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116520.addgene-full.gb" }, @@ -47176,7 +59475,10 @@ "plasmid_name": "pGWB455", "sequence-type": "depositor-full", "addgene_id": "74837", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74837.depositor-full.gb" }, @@ -47185,7 +59487,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.T347N", "sequence-type": "addgene-full", "addgene_id": "81394", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -47197,7 +59502,10 @@ "plasmid_name": "pCFJ2241 - [1-2] ENTR - Fluor - ce-mCardinal (1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159860", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159860.addgene-full.gb" }, @@ -47206,7 +59514,10 @@ "plasmid_name": "Flag-HA-JOSD2", "sequence-type": "addgene-full", "addgene_id": "22548", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22548.addgene-full.gb" }, @@ -47215,7 +59526,10 @@ "plasmid_name": "pDONR221-SPNS3_STOP", "sequence-type": "addgene-full", "addgene_id": "161451", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161451.addgene-full.gb" }, @@ -47224,7 +59538,10 @@ "plasmid_name": "p5Esnx5E1", "sequence-type": "addgene-full", "addgene_id": "90115", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90115.addgene-full.gb" }, @@ -47233,7 +59550,6 @@ "plasmid_name": "R777-E022 Hs.CCND3-nostop", "sequence-type": "depositor-full", "addgene_id": "70306", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -47245,7 +59561,10 @@ "plasmid_name": "pDONR201-Eps8L2", "sequence-type": "addgene-full", "addgene_id": "196526", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196526.addgene-full.gb" }, @@ -47254,7 +59573,10 @@ "plasmid_name": "pLenti-PGK-flag-RAP1B-V12-puro", "sequence-type": "addgene-full", "addgene_id": "156168", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156168.addgene-full.gb" }, @@ -47263,7 +59585,10 @@ "plasmid_name": "pWS481", "sequence-type": "addgene-full", "addgene_id": "123029", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123029.addgene-full.gb" }, @@ -47272,7 +59597,10 @@ "plasmid_name": "pDONR221_SLC30A7", "sequence-type": "addgene-full", "addgene_id": "132148", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132148.addgene-full.gb" }, @@ -47281,7 +59609,10 @@ "plasmid_name": "AAEL017341 TK R", "sequence-type": "addgene-full", "addgene_id": "115412", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115412.addgene-full.gb" }, @@ -47290,7 +59621,10 @@ "plasmid_name": "pPB-cT3G-cERP2-PPARG", "sequence-type": "addgene-full", "addgene_id": "192912", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192912.addgene-full.gb" }, @@ -47299,7 +59633,10 @@ "plasmid_name": "pDONR223-ZNF655", "sequence-type": "addgene-full", "addgene_id": "88578", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88578.addgene-full.gb" }, @@ -47308,7 +59645,10 @@ "plasmid_name": "pPB-DEST-R5R4-pHygTK", "sequence-type": "addgene-full", "addgene_id": "141059", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141059.addgene-full.gb" }, @@ -47317,7 +59657,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS1", "sequence-type": "addgene-full", "addgene_id": "145342", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145342.addgene-full.gb" }, @@ -47326,7 +59669,10 @@ "plasmid_name": "C417-E12: attB4-polyhedrinp>Strep2x2-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162937", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -47338,7 +59684,10 @@ "plasmid_name": "pLX304 Luciferase-V5 blast", "sequence-type": "addgene-full", "addgene_id": "98580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98580.addgene-full.gb" }, @@ -47347,7 +59696,10 @@ "plasmid_name": "pDONR223_MAPKAP1_WT", "sequence-type": "addgene-full", "addgene_id": "82146", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82146.addgene-full.gb" }, @@ -47356,7 +59708,10 @@ "plasmid_name": "pNTI647 dCas9-Mxi1 TetR KanMX", "sequence-type": "addgene-full", "addgene_id": "139474", - "references": [], + "references": [ + "https://doi.org/10.1186/s12864-021-07518-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33757429" + ], "kit": null, "file": "data/addgene_plasmids/139474.addgene-full.gb" }, @@ -47365,7 +59720,10 @@ "plasmid_name": "pDONR221_SLC7A8", "sequence-type": "addgene-full", "addgene_id": "132233", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132233.addgene-full.gb" }, @@ -47374,7 +59732,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-R4R3", "sequence-type": "addgene-full", "addgene_id": "113739", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -47386,7 +59747,10 @@ "plasmid_name": "pENTR4 Ta-SRO1 JN177", "sequence-type": "addgene-full", "addgene_id": "192546", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koac261", + "https://www.ncbi.nlm.nih.gov/pubmed/35980152" + ], "kit": null, "file": "data/addgene_plasmids/192546.addgene-full.gb" }, @@ -47395,7 +59759,10 @@ "plasmid_name": "pDONR221-HES3", "sequence-type": "addgene-full", "addgene_id": "101411", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101411.addgene-full.gb" }, @@ -47404,7 +59771,10 @@ "plasmid_name": "pQMD", "sequence-type": "depositor-full", "addgene_id": "48103", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.02296-13", + "https://www.ncbi.nlm.nih.gov/pubmed/23995928" + ], "kit": null, "file": "data/addgene_plasmids/48103.depositor-full.gb" }, @@ -47413,7 +59783,10 @@ "plasmid_name": "pAG415GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14361", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -47425,7 +59798,10 @@ "plasmid_name": "pGWB545", "sequence-type": "depositor-full", "addgene_id": "74879", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74879.depositor-full.gb" }, @@ -47434,7 +59810,10 @@ "plasmid_name": "pMuLE ENTR tdTomato L5-L2", "sequence-type": "depositor-full", "addgene_id": "62185", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62185.depositor-full.gb" }, @@ -47443,7 +59822,10 @@ "plasmid_name": "pENTR/pTER shEGFP #1 (628-2)", "sequence-type": "depositor-full", "addgene_id": "17470", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17470.depositor-full.gb" }, @@ -47452,7 +59834,10 @@ "plasmid_name": "PTPRA_deltaD1-GFP fusion", "sequence-type": "addgene-full", "addgene_id": "139640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139640.addgene-full.gb" }, @@ -47461,7 +59846,10 @@ "plasmid_name": "pGGEV_6_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49301", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -47473,7 +59861,10 @@ "plasmid_name": "pDONR221_SLC25A5", "sequence-type": "addgene-full", "addgene_id": "132007", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132007.addgene-full.gb" }, @@ -47482,7 +59873,10 @@ "plasmid_name": "pTRE:shRNA A-pGK:rtTA-Cre", "sequence-type": "addgene-full", "addgene_id": "68471", - "references": [], + "references": [ + "https://doi.org/10.1038/srep16836", + "https://www.ncbi.nlm.nih.gov/pubmed/26887506" + ], "kit": null, "file": "data/addgene_plasmids/68471.addgene-full.gb" }, @@ -47491,7 +59885,10 @@ "plasmid_name": "pCPP5328", "sequence-type": "addgene-full", "addgene_id": "128721", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128721.addgene-full.gb" }, @@ -47500,7 +59897,6 @@ "plasmid_name": "R777-E064 Hs.ETS1-nostop", "sequence-type": "depositor-full", "addgene_id": "70348", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -47512,7 +59908,10 @@ "plasmid_name": "pDONR221-Pfa1", "sequence-type": "addgene-full", "addgene_id": "99999", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99999.addgene-full.gb" }, @@ -47521,7 +59920,10 @@ "plasmid_name": "pDONR221 NLRP1 M77T", "sequence-type": "addgene-full", "addgene_id": "166818", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166818.addgene-full.gb" }, @@ -47530,7 +59932,10 @@ "plasmid_name": "eGFP L138 gRNA", "sequence-type": "addgene-full", "addgene_id": "119133", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-018-36739-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30679582" + ], "kit": null, "file": "data/addgene_plasmids/119133.addgene-full.gb" }, @@ -47539,7 +59944,10 @@ "plasmid_name": "tetO-SRF", "sequence-type": "addgene-full", "addgene_id": "170704", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170704.addgene-full.gb" }, @@ -47548,7 +59956,10 @@ "plasmid_name": "pBABE-puro-Halo-hMRE11(wt)", "sequence-type": "addgene-full", "addgene_id": "208393", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06889-6", + "https://www.ncbi.nlm.nih.gov/pubmed/38200309" + ], "kit": null, "file": "data/addgene_plasmids/208393.addgene-full.gb" }, @@ -47557,7 +59968,6 @@ "plasmid_name": "IDG_KCNAB3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161665", - "references": [], "kit": null, "file": "data/addgene_plasmids/161665.addgene-full.gb" }, @@ -47566,7 +59976,10 @@ "plasmid_name": "pFRT_TO_FlagHA_G3BP1", "sequence-type": "addgene-full", "addgene_id": "127106", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.12.024", + "https://www.ncbi.nlm.nih.gov/pubmed/31981475" + ], "kit": null, "file": "data/addgene_plasmids/127106.addgene-full.gb" }, @@ -47575,7 +59988,10 @@ "plasmid_name": "CH42: Para_lac_bD", "sequence-type": "addgene-full", "addgene_id": "104868", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104868.addgene-full.gb" }, @@ -47584,7 +60000,10 @@ "plasmid_name": "pME-QUAS5x:GFPNLS-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155115", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155115.addgene-full.gb" }, @@ -47593,7 +60012,10 @@ "plasmid_name": "PE_11: Para_lac_tet_bD", "sequence-type": "addgene-full", "addgene_id": "113596", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113596.addgene-full.gb" }, @@ -47602,7 +60024,10 @@ "plasmid_name": "pKB11 (pDEST-DHFR F[1,2] C-term, NatR)", "sequence-type": "addgene-full", "addgene_id": "210485", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210485.addgene-full.gb" }, @@ -47611,7 +60036,10 @@ "plasmid_name": "pJJiaDEST-APEX2-GAL3", "sequence-type": "addgene-full", "addgene_id": "149518", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.009", + "https://www.ncbi.nlm.nih.gov/pubmed/29625033" + ], "kit": null, "file": "data/addgene_plasmids/149518.addgene-full.gb" }, @@ -47620,7 +60048,10 @@ "plasmid_name": "pZA1", "sequence-type": "addgene-full", "addgene_id": "158479", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158479.addgene-full.gb" }, @@ -47629,7 +60060,10 @@ "plasmid_name": "pHAGE-AXL", "sequence-type": "addgene-full", "addgene_id": "116714", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116714.addgene-full.gb" }, @@ -47638,7 +60072,10 @@ "plasmid_name": "GLUT1-eGFP/pcDNA-DEST47", "sequence-type": "addgene-full", "addgene_id": "18729", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbamem.2007.11.015", + "https://www.ncbi.nlm.nih.gov/pubmed/18177733" + ], "kit": null, "file": "data/addgene_plasmids/18729.addgene-full.gb" }, @@ -47647,7 +60084,10 @@ "plasmid_name": "pDEST-hMeCP2-GFP-R270X", "sequence-type": "addgene-full", "addgene_id": "48079", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.038", + "https://www.ncbi.nlm.nih.gov/pubmed/23452848" + ], "kit": null, "file": "data/addgene_plasmids/48079.addgene-full.gb" }, @@ -47656,7 +60096,10 @@ "plasmid_name": "LIIc F 1-2", "sequence-type": "depositor-full", "addgene_id": "54366", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54366.depositor-full.gb" }, @@ -47665,7 +60108,6 @@ "plasmid_name": "pAMW-WnkAAxV", "sequence-type": "addgene-full", "addgene_id": "203980", - "references": [], "kit": null, "file": "data/addgene_plasmids/203980.addgene-full.gb" }, @@ -47674,7 +60116,10 @@ "plasmid_name": "pSCAR_Cas9-hygro_GFP", "sequence-type": "addgene-full", "addgene_id": "162075", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.01.001", + "https://www.ncbi.nlm.nih.gov/pubmed/33497609" + ], "kit": null, "file": "data/addgene_plasmids/162075.addgene-full.gb" }, @@ -47683,7 +60128,10 @@ "plasmid_name": "pEF5B-FRT-GFP-\u03b1TAT1[D157N]", "sequence-type": "depositor-full", "addgene_id": "27100", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1013728107", + "https://www.ncbi.nlm.nih.gov/pubmed/21068373" + ], "kit": null, "file": "data/addgene_plasmids/27100.depositor-full.gb" }, @@ -47692,7 +60140,10 @@ "plasmid_name": "TUBG1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98376", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98376.addgene-full.gb" }, @@ -47701,7 +60152,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM F370G", "sequence-type": "addgene-full", "addgene_id": "169986", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169986.addgene-full.gb" }, @@ -47710,7 +60164,10 @@ "plasmid_name": "pDONR223_WBSCR17_p.E507K", "sequence-type": "addgene-full", "addgene_id": "81619", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -47722,7 +60179,10 @@ "plasmid_name": "pDONR221-ZNF208", "sequence-type": "depositor-full", "addgene_id": "101549", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101549.depositor-full.gb" }, @@ -47731,7 +60191,10 @@ "plasmid_name": "actc1b-mKate2-Bin1b", "sequence-type": "addgene-full", "addgene_id": "109509", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109509.addgene-full.gb" }, @@ -47740,7 +60203,10 @@ "plasmid_name": "pENTR4-GST 6P-1 (w487-1)", "sequence-type": "depositor-full", "addgene_id": "17741", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17741.depositor-full.gb" }, @@ -47749,7 +60215,9 @@ "plasmid_name": "pLV-EgI-BlastR", "sequence-type": "addgene-full", "addgene_id": "207176", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207176.addgene-full.gb" }, @@ -47758,7 +60226,10 @@ "plasmid_name": "TFORF3403", "sequence-type": "addgene-full", "addgene_id": "144879", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144879.addgene-full.gb" }, @@ -47767,7 +60238,10 @@ "plasmid_name": "pDONR221_SLC25A12", "sequence-type": "addgene-full", "addgene_id": "131938", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131938.addgene-full.gb" }, @@ -47776,7 +60250,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF8b", "sequence-type": "depositor-full", "addgene_id": "168859", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168859.depositor-full.gb" }, @@ -47785,7 +60262,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12R", "sequence-type": "addgene-full", "addgene_id": "82804", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82804.addgene-full.gb" }, @@ -47794,7 +60274,9 @@ "plasmid_name": "psgRNAc", "sequence-type": "addgene-full", "addgene_id": "114006", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29765036" + ], "kit": null, "file": "data/addgene_plasmids/114006.addgene-full.gb" }, @@ -47803,7 +60285,10 @@ "plasmid_name": "pDONR223_RB1_p.V654L", "sequence-type": "addgene-full", "addgene_id": "81562", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -47815,7 +60300,10 @@ "plasmid_name": "pDONR221-SLC25A32_STOP", "sequence-type": "addgene-full", "addgene_id": "161147", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161147.addgene-full.gb" }, @@ -47824,7 +60312,10 @@ "plasmid_name": "RCASBP-Y NHA", "sequence-type": "depositor-full", "addgene_id": "11479", - "references": [], + "references": [ + "https://doi.org/10.1093/dnares/8.5.221", + "https://www.ncbi.nlm.nih.gov/pubmed/11759842" + ], "kit": null, "file": "data/addgene_plasmids/11479.depositor-full.gb" }, @@ -47833,7 +60324,10 @@ "plasmid_name": "R619-M66-303: CMV51p> HCoV-OC43 S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166015", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/166015.addgene-full.gb" }, @@ -47842,7 +60336,10 @@ "plasmid_name": "RSRC1", "sequence-type": "addgene-full", "addgene_id": "155983", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155983.addgene-full.gb" }, @@ -47851,7 +60348,10 @@ "plasmid_name": "p3E-rab18b", "sequence-type": "addgene-full", "addgene_id": "109672", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109672.addgene-full.gb" }, @@ -47860,7 +60360,10 @@ "plasmid_name": "TFORF3280", "sequence-type": "addgene-full", "addgene_id": "144756", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144756.addgene-full.gb" }, @@ -47869,7 +60372,10 @@ "plasmid_name": "p3E-ARF6-DN", "sequence-type": "addgene-full", "addgene_id": "109592", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109592.addgene-full.gb" }, @@ -47878,7 +60384,10 @@ "plasmid_name": "pGWT35S-AtOEP7(1-50aa)-mVenus", "sequence-type": "addgene-full", "addgene_id": "194000", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "file": "data/addgene_plasmids/194000.addgene-full.gb" }, @@ -47887,7 +60396,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF8", "sequence-type": "addgene-full", "addgene_id": "168884", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168884.addgene-full.gb" }, @@ -47896,7 +60408,10 @@ "plasmid_name": "5'-3xFLAG Tcf12+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212077", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212077.addgene-full.gb" }, @@ -47905,7 +60420,10 @@ "plasmid_name": "pLIX403_deltaUBA_UBAP2L_mCherry", "sequence-type": "addgene-full", "addgene_id": "105287", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.12.032", + "https://www.ncbi.nlm.nih.gov/pubmed/29373831" + ], "kit": null, "file": "data/addgene_plasmids/105287.addgene-full.gb" }, @@ -47914,7 +60432,10 @@ "plasmid_name": "pDONR223_PTEN_p.R173H", "sequence-type": "addgene-full", "addgene_id": "81682", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -47926,7 +60447,6 @@ "plasmid_name": "pINDUCER20-FLAG-hMYOD1 (#800)", "sequence-type": "addgene-full", "addgene_id": "78330", - "references": [], "kit": null, "file": "data/addgene_plasmids/78330.addgene-full.gb" }, @@ -47935,7 +60455,10 @@ "plasmid_name": "TFORF3460", "sequence-type": "addgene-full", "addgene_id": "144936", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144936.addgene-full.gb" }, @@ -47944,7 +60467,10 @@ "plasmid_name": "pHAGE-BRAF-T599R", "sequence-type": "addgene-full", "addgene_id": "116202", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116202.addgene-full.gb" }, @@ -47953,7 +60479,10 @@ "plasmid_name": "pDONR221_SLC6A15", "sequence-type": "addgene-full", "addgene_id": "131877", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131877.addgene-full.gb" }, @@ -47962,7 +60491,10 @@ "plasmid_name": "TFORF3206", "sequence-type": "addgene-full", "addgene_id": "144682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144682.addgene-full.gb" }, @@ -47971,7 +60503,10 @@ "plasmid_name": "pDONR221-SLC29A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161093", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161093.addgene-full.gb" }, @@ -47980,7 +60515,10 @@ "plasmid_name": "p3E-mCherry-NS-MCS", "sequence-type": "depositor-full", "addgene_id": "75179", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -47992,7 +60530,9 @@ "plasmid_name": "pME-mCerulean3-TUBB1A (JDW 1367)", "sequence-type": "addgene-full", "addgene_id": "224503", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224503.addgene-full.gb" }, @@ -48001,7 +60541,10 @@ "plasmid_name": "pDONR221-SLC6A17_STOP", "sequence-type": "addgene-full", "addgene_id": "161373", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161373.addgene-full.gb" }, @@ -48010,7 +60553,10 @@ "plasmid_name": "pDONR223_JAK2_WT", "sequence-type": "addgene-full", "addgene_id": "81756", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -48034,7 +60580,10 @@ "plasmid_name": "TFORF3086", "sequence-type": "addgene-full", "addgene_id": "144562", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144562.addgene-full.gb" }, @@ -48043,7 +60592,10 @@ "plasmid_name": "pDONR221 Mak16", "sequence-type": "depositor-full", "addgene_id": "63762", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63762.depositor-full.gb" }, @@ -48052,7 +60604,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp13", "sequence-type": "addgene-full", "addgene_id": "168950", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168950.addgene-full.gb" }, @@ -48061,7 +60616,10 @@ "plasmid_name": "DCP1A", "sequence-type": "addgene-full", "addgene_id": "155498", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155498.addgene-full.gb" }, @@ -48070,7 +60628,10 @@ "plasmid_name": "pHAGE-BRAF-L597S", "sequence-type": "addgene-full", "addgene_id": "116179", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116179.addgene-full.gb" }, @@ -48079,7 +60640,9 @@ "plasmid_name": "pMpGWB419", "sequence-type": "depositor-full", "addgene_id": "68684", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68684.depositor-full.gb" }, @@ -48088,7 +60651,10 @@ "plasmid_name": "pDONR223_FTH1_WT", "sequence-type": "addgene-full", "addgene_id": "81879", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -48100,7 +60666,6 @@ "plasmid_name": "pLV-EF1-FLP-PGK-Neo", "sequence-type": "addgene-full", "addgene_id": "108544", - "references": [], "kit": null, "file": "data/addgene_plasmids/108544.addgene-full.gb" }, @@ -48109,7 +60674,10 @@ "plasmid_name": "A1-LCD-30G+30S-12F+12Y", "sequence-type": "addgene-full", "addgene_id": "178687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178687.addgene-full.gb" }, @@ -48118,7 +60686,9 @@ "plasmid_name": "pPB-cT3G-cERP2-HDAC2", "sequence-type": "addgene-full", "addgene_id": "222553", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222553.addgene-full.gb" }, @@ -48127,7 +60697,10 @@ "plasmid_name": "pGGEV_3_Linker", "sequence-type": "depositor-full", "addgene_id": "49283", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -48139,7 +60712,10 @@ "plasmid_name": "pNOC-RLUC", "sequence-type": "addgene-full", "addgene_id": "98142", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.14314", + "https://www.ncbi.nlm.nih.gov/pubmed/30883973" + ], "kit": null, "file": "data/addgene_plasmids/98142.addgene-full.gb" }, @@ -48148,7 +60724,6 @@ "plasmid_name": "pAd/WT1-IRES-nAmCyan", "sequence-type": "addgene-full", "addgene_id": "29756", - "references": [], "kit": null, "file": "data/addgene_plasmids/29756.addgene-full.gb" }, @@ -48157,7 +60732,10 @@ "plasmid_name": "KZ801: pMAGIC (L1-R5) hU6::SaCas9 gRNA scaffold; EF1a promoter", "sequence-type": "addgene-full", "addgene_id": "121814", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121814.addgene-full.gb" }, @@ -48166,7 +60744,6 @@ "plasmid_name": "pmCellFree_KA1_Human-ACE2", "sequence-type": "addgene-full", "addgene_id": "169406", - "references": [], "kit": null, "file": "data/addgene_plasmids/169406.addgene-full.gb" }, @@ -48175,7 +60752,10 @@ "plasmid_name": "pHAGE-EGFR-R776H", "sequence-type": "addgene-full", "addgene_id": "116299", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116299.addgene-full.gb" }, @@ -48184,7 +60764,10 @@ "plasmid_name": "LB101: pMAGIC (L3-L2) 3x HA epitope tag + polyA; hU6::SaCas9 TRE#2 gRNA", "sequence-type": "addgene-full", "addgene_id": "131758", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/131758.addgene-full.gb" }, @@ -48193,7 +60776,10 @@ "plasmid_name": "pYPQ230-D156R", "sequence-type": "addgene-full", "addgene_id": "188542", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02929-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37122009" + ], "kit": null, "file": "data/addgene_plasmids/188542.addgene-full.gb" }, @@ -48202,7 +60788,10 @@ "plasmid_name": "pDONR221-SLC29A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161305", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161305.depositor-full.gb" }, @@ -48211,7 +60800,10 @@ "plasmid_name": "TFORF3143", "sequence-type": "addgene-full", "addgene_id": "144619", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144619.addgene-full.gb" }, @@ -48220,7 +60812,10 @@ "plasmid_name": "pGMEH-0X750-luxAB-DAS+4", "sequence-type": "depositor-full", "addgene_id": "49519", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "file": "data/addgene_plasmids/49519.depositor-full.gb" }, @@ -48229,7 +60824,10 @@ "plasmid_name": "pDONR223_MAGEC2_p.D15N", "sequence-type": "addgene-full", "addgene_id": "81624", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -48241,7 +60839,10 @@ "plasmid_name": "pDONR221-SLC22A17_STOP", "sequence-type": "addgene-full", "addgene_id": "161201", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161201.addgene-full.gb" }, @@ -48250,7 +60851,10 @@ "plasmid_name": "pDONR223_TUBB_WT", "sequence-type": "addgene-full", "addgene_id": "81990", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -48262,7 +60866,10 @@ "plasmid_name": "pCFJ1208", "sequence-type": "depositor-full", "addgene_id": "44490", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44490.depositor-full.gb" }, @@ -48271,7 +60878,10 @@ "plasmid_name": "pDONR221-kcnj3a", "sequence-type": "addgene-full", "addgene_id": "173129", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173129.addgene-full.gb" }, @@ -48280,7 +60890,10 @@ "plasmid_name": "pHTNW", "sequence-type": "addgene-full", "addgene_id": "136403", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/136403.addgene-full.gb" }, @@ -48289,7 +60902,6 @@ "plasmid_name": "35S:YFPc-RabG3b-WT", "sequence-type": "addgene-full", "addgene_id": "102373", - "references": [], "kit": null, "file": "data/addgene_plasmids/102373.addgene-full.gb" }, @@ -48298,7 +60910,10 @@ "plasmid_name": "TFORF2934", "sequence-type": "addgene-full", "addgene_id": "144410", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144410.addgene-full.gb" }, @@ -48307,7 +60922,6 @@ "plasmid_name": "R777-E323 Hs.SPRED2", "sequence-type": "depositor-full", "addgene_id": "70607", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -48319,7 +60933,10 @@ "plasmid_name": "pDEST-N2H-F2-empty vector", "sequence-type": "addgene-full", "addgene_id": "125552", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11809-2", + "https://www.ncbi.nlm.nih.gov/pubmed/31467278" + ], "kit": null, "file": "data/addgene_plasmids/125552.addgene-full.gb" }, @@ -48328,7 +60945,10 @@ "plasmid_name": "pDONR221_MFSD3", "sequence-type": "addgene-full", "addgene_id": "131905", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131905.addgene-full.gb" }, @@ -48337,7 +60957,10 @@ "plasmid_name": "pHAGE-ESR1-S463P", "sequence-type": "addgene-full", "addgene_id": "116370", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116370.addgene-full.gb" }, @@ -48346,7 +60969,9 @@ "plasmid_name": "pME-BrainbowTEC", "sequence-type": "depositor-full", "addgene_id": "82405", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82405.depositor-full.gb" }, @@ -48355,7 +60980,10 @@ "plasmid_name": "TFORF3368", "sequence-type": "addgene-full", "addgene_id": "144844", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144844.addgene-full.gb" }, @@ -48364,7 +60992,10 @@ "plasmid_name": "pDONR223_FBXW7_p.D211N", "sequence-type": "addgene-full", "addgene_id": "82839", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82839.addgene-full.gb" }, @@ -48373,7 +61004,6 @@ "plasmid_name": "PSMA4_BirA_Cterm", "sequence-type": "addgene-full", "addgene_id": "221513", - "references": [], "kit": null, "file": "data/addgene_plasmids/221513.addgene-full.gb" }, @@ -48382,7 +61012,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep27", "sequence-type": "addgene-full", "addgene_id": "136857", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136857.addgene-full.gb" }, @@ -48391,7 +61024,10 @@ "plasmid_name": "pE4n", "sequence-type": "depositor-full", "addgene_id": "17458", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17458.depositor-full.gb" }, @@ -48400,7 +61036,10 @@ "plasmid_name": "pLenti CRISPR sgMTHFD2_1", "sequence-type": "addgene-full", "addgene_id": "106313", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106313.addgene-full.gb" }, @@ -48409,7 +61048,10 @@ "plasmid_name": "pYPQ239-RR", "sequence-type": "addgene-full", "addgene_id": "108862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "file": "data/addgene_plasmids/108862.addgene-full.gb" }, @@ -48418,7 +61060,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-ERBB2 NLS", "sequence-type": "addgene-full", "addgene_id": "192316", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192316.addgene-full.gb" }, @@ -48427,7 +61072,10 @@ "plasmid_name": "pENTR-ZmIAA5", "sequence-type": "addgene-full", "addgene_id": "188430", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188430.addgene-full.gb" }, @@ -48436,7 +61084,10 @@ "plasmid_name": "pGWB509", "sequence-type": "depositor-full", "addgene_id": "74851", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74851.depositor-full.gb" }, @@ -48445,7 +61096,10 @@ "plasmid_name": "pAG303GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14349", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -48457,7 +61111,10 @@ "plasmid_name": "pSGE_709_S2-1-Pal_dCP", "sequence-type": "depositor-full", "addgene_id": "71162", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71162.depositor-full.gb" }, @@ -48466,7 +61123,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP15", "sequence-type": "addgene-full", "addgene_id": "158366", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158366.addgene-full.gb" }, @@ -48475,7 +61135,10 @@ "plasmid_name": "pENTR L3-mCherry-HA-L2", "sequence-type": "depositor-full", "addgene_id": "32313", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32313.depositor-full.gb" }, @@ -48484,7 +61147,10 @@ "plasmid_name": "pDONR221 Cas9-POLD3", "sequence-type": "addgene-full", "addgene_id": "183197", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "file": "data/addgene_plasmids/183197.addgene-full.gb" }, @@ -48493,7 +61159,6 @@ "plasmid_name": "pKPY737", "sequence-type": "depositor-full", "addgene_id": "72673", - "references": [], "kit": null, "file": "data/addgene_plasmids/72673.depositor-full.gb" }, @@ -48502,7 +61167,6 @@ "plasmid_name": "R777-E076 Hs.EXOC5-nostop", "sequence-type": "depositor-full", "addgene_id": "70360", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -48514,7 +61178,10 @@ "plasmid_name": "gRNA NIA Null", "sequence-type": "addgene-full", "addgene_id": "198728", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-022-01585-8", + "https://www.ncbi.nlm.nih.gov/pubmed/36593415" + ], "kit": null, "file": "data/addgene_plasmids/198728.addgene-full.gb" }, @@ -48523,7 +61190,10 @@ "plasmid_name": "HA-hDAGLa-V5", "sequence-type": "addgene-full", "addgene_id": "87674", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mcn.2016.08.011", + "https://www.ncbi.nlm.nih.gov/pubmed/27595600" + ], "kit": null, "file": "data/addgene_plasmids/87674.addgene-full.gb" }, @@ -48532,7 +61202,10 @@ "plasmid_name": "pDONR223_BRP44_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82976", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82976.addgene-full.gb" }, @@ -48541,7 +61214,10 @@ "plasmid_name": "pHO_pTEFmut7_CggR_ble", "sequence-type": "addgene-full", "addgene_id": "124584", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20199071", + "https://www.ncbi.nlm.nih.gov/pubmed/31885198" + ], "kit": null, "file": "data/addgene_plasmids/124584.addgene-full.gb" }, @@ -48550,7 +61226,6 @@ "plasmid_name": "pGEX6P1-DEST-His", "sequence-type": "addgene-full", "addgene_id": "119763", - "references": [], "kit": null, "file": "data/addgene_plasmids/119763.addgene-full.gb" }, @@ -48559,7 +61234,10 @@ "plasmid_name": "KG703: pMVP (L5-L4) 6x His epitope tag", "sequence-type": "addgene-full", "addgene_id": "121706", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121706.addgene-full.gb" }, @@ -48568,7 +61246,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-59", "sequence-type": "depositor-full", "addgene_id": "46657", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46657.depositor-full.gb" }, @@ -48577,7 +61258,10 @@ "plasmid_name": "AAEL017414 TK R", "sequence-type": "addgene-full", "addgene_id": "115396", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115396.addgene-full.gb" }, @@ -48586,7 +61270,9 @@ "plasmid_name": "pDONR221 msNLRP3(\u0394PYD, I125M-END) (STOP)", "sequence-type": "addgene-full", "addgene_id": "218640", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218640.addgene-full.gb" }, @@ -48595,7 +61281,10 @@ "plasmid_name": "pDD378", "sequence-type": "addgene-full", "addgene_id": "91827", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "file": "data/addgene_plasmids/91827.addgene-full.gb" }, @@ -48604,7 +61293,10 @@ "plasmid_name": "pENTR4-FKBP12DD N-term C (w385-10)", "sequence-type": "depositor-full", "addgene_id": "17416", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17416.depositor-full.gb" }, @@ -48613,7 +61305,10 @@ "plasmid_name": "pHAGE-BRAF-F595L", "sequence-type": "addgene-full", "addgene_id": "116144", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116144.addgene-full.gb" }, @@ -48622,7 +61317,10 @@ "plasmid_name": "pYPQ239-STU", "sequence-type": "addgene-full", "addgene_id": "138112", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138112.addgene-full.gb" }, @@ -48631,7 +61329,10 @@ "plasmid_name": "pDONR221-kcnk13b", "sequence-type": "addgene-full", "addgene_id": "208997", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208997.addgene-full.gb" }, @@ -48640,7 +61341,10 @@ "plasmid_name": "pAG306GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14307", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -48652,7 +61356,10 @@ "plasmid_name": "pCLX-MIFE-hM3Dq-PGK-mCherry", "sequence-type": "addgene-full", "addgene_id": "114294", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "file": "data/addgene_plasmids/114294.addgene-full.gb" }, @@ -48661,7 +61368,10 @@ "plasmid_name": "pCM5.54", "sequence-type": "depositor-full", "addgene_id": "21392", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21392.depositor-full.gb" }, @@ -48670,7 +61380,10 @@ "plasmid_name": "pDONR223_GEN1_WT", "sequence-type": "addgene-full", "addgene_id": "81844", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -48682,7 +61395,10 @@ "plasmid_name": "pENTR4-V5 (w71-3)", "sequence-type": "addgene-full", "addgene_id": "17425", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17425.addgene-full.gb" }, @@ -48691,7 +61407,10 @@ "plasmid_name": "pENTR223-BPLF1_3009-3149", "sequence-type": "addgene-full", "addgene_id": "198587", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198587.addgene-full.gb" }, @@ -48700,7 +61419,10 @@ "plasmid_name": "KN801: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS-VPR", "sequence-type": "addgene-full", "addgene_id": "121829", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121829.addgene-full.gb" }, @@ -48709,7 +61431,10 @@ "plasmid_name": "pDONR223_GATA3_p.R330K", "sequence-type": "addgene-full", "addgene_id": "81410", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -48721,7 +61446,10 @@ "plasmid_name": "pCMU-NUCr", "sequence-type": "depositor-full", "addgene_id": "61168", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61168.depositor-full.gb" }, @@ -48730,7 +61458,10 @@ "plasmid_name": "pEPYCeGM0002", "sequence-type": "addgene-full", "addgene_id": "196142", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196142.addgene-full.gb" }, @@ -48739,7 +61470,10 @@ "plasmid_name": "TFORF3148", "sequence-type": "addgene-full", "addgene_id": "144624", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144624.addgene-full.gb" }, @@ -48748,7 +61482,10 @@ "plasmid_name": "pLenti6.3/TO/V5-DEST-mTurquoise2", "sequence-type": "addgene-full", "addgene_id": "191010", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg1840", + "https://www.ncbi.nlm.nih.gov/pubmed/37436978" + ], "kit": null, "file": "data/addgene_plasmids/191010.addgene-full.gb" }, @@ -48757,7 +61494,10 @@ "plasmid_name": "p3E-DrCavin1b", "sequence-type": "addgene-full", "addgene_id": "194292", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "file": "data/addgene_plasmids/194292.addgene-full.gb" }, @@ -48766,7 +61506,10 @@ "plasmid_name": "B3GALT5_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177006", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/177006.addgene-full.gb" }, @@ -48775,7 +61518,9 @@ "plasmid_name": "pDONR221-DDX5(PrD)", "sequence-type": "addgene-full", "addgene_id": "166167", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166167.addgene-full.gb" }, @@ -48784,7 +61529,10 @@ "plasmid_name": "pHIS8-3_DL121", "sequence-type": "addgene-full", "addgene_id": "171953", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.68346", + "https://www.ncbi.nlm.nih.gov/pubmed/34132193" + ], "kit": null, "file": "data/addgene_plasmids/171953.addgene-full.gb" }, @@ -48793,7 +61541,6 @@ "plasmid_name": "pENTR-R2L3-cGR-ID", "sequence-type": "addgene-full", "addgene_id": "139541", - "references": [], "kit": null, "file": "data/addgene_plasmids/139541.addgene-full.gb" }, @@ -48802,7 +61549,10 @@ "plasmid_name": "pDONR221_XPR1", "sequence-type": "addgene-full", "addgene_id": "132306", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132306.addgene-full.gb" }, @@ -48811,7 +61561,10 @@ "plasmid_name": "pMYH9-WT-V5", "sequence-type": "addgene-full", "addgene_id": "183512", - "references": [], + "references": [ + "https://doi.org/10.1186/1755-8417-1-5", + "https://www.ncbi.nlm.nih.gov/pubmed/19046415" + ], "kit": null, "file": "data/addgene_plasmids/183512.addgene-full.gb" }, @@ -48820,7 +61573,6 @@ "plasmid_name": "pSC38", "sequence-type": "addgene-full", "addgene_id": "104812", - "references": [], "kit": null, "file": "data/addgene_plasmids/104812.addgene-full.gb" }, @@ -48829,7 +61581,10 @@ "plasmid_name": "pACT2-Utp15", "sequence-type": "addgene-full", "addgene_id": "99978", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99978.addgene-full.gb" }, @@ -48838,7 +61593,10 @@ "plasmid_name": "pcDNA5-FRT/TO-N-mEGFP-PARP11", "sequence-type": "addgene-full", "addgene_id": "177998", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "file": "data/addgene_plasmids/177998.addgene-full.gb" }, @@ -48847,7 +61605,10 @@ "plasmid_name": "pDEST40-2XFL-Src-K298M", "sequence-type": "addgene-full", "addgene_id": "140315", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140315.addgene-full.gb" }, @@ -48856,7 +61617,6 @@ "plasmid_name": "p667-UBC-BRSK2-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135254", - "references": [], "kit": null, "file": "data/addgene_plasmids/135254.addgene-full.gb" }, @@ -48865,7 +61625,9 @@ "plasmid_name": "pDestTol2-QUAS:NLS-mApple-he1.1:CFP", "sequence-type": "addgene-full", "addgene_id": "184814", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "file": "data/addgene_plasmids/184814.addgene-full.gb" }, @@ -48874,7 +61636,10 @@ "plasmid_name": "pAF018 p3E-2A-mCerulean-CAAX", "sequence-type": "addgene-full", "addgene_id": "195975", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.24668", + "https://www.ncbi.nlm.nih.gov/pubmed/30194800" + ], "kit": null, "file": "data/addgene_plasmids/195975.addgene-full.gb" }, @@ -48883,7 +61648,10 @@ "plasmid_name": "pwB2b", "sequence-type": "depositor-full", "addgene_id": "32094", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1002161", + "https://www.ncbi.nlm.nih.gov/pubmed/21829355" + ], "kit": null, "file": "data/addgene_plasmids/32094.depositor-full.gb" }, @@ -48892,7 +61660,10 @@ "plasmid_name": "pYPQ145-ZmUbi-tRNA", "sequence-type": "addgene-full", "addgene_id": "158403", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00953-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34168320" + ], "kit": null, "file": "data/addgene_plasmids/158403.addgene-full.gb" }, @@ -48901,7 +61672,10 @@ "plasmid_name": "MSCV-neo C-HAonly HPV16 E7 E80A/D81A", "sequence-type": "addgene-full", "addgene_id": "191541", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "file": "data/addgene_plasmids/191541.addgene-full.gb" }, @@ -48910,7 +61684,10 @@ "plasmid_name": "pHAGE-TRIM33__RET", "sequence-type": "addgene-full", "addgene_id": "116841", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116841.addgene-full.gb" }, @@ -48919,7 +61696,6 @@ "plasmid_name": "R777-E296 Hs.RPS6KA6-nostop", "sequence-type": "depositor-full", "addgene_id": "70580", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -48931,7 +61707,10 @@ "plasmid_name": "PB-TAC-KRAB-dCas9", "sequence-type": "addgene-full", "addgene_id": "120355", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2018.12.008", + "https://www.ncbi.nlm.nih.gov/pubmed/30639212" + ], "kit": null, "file": "data/addgene_plasmids/120355.addgene-full.gb" }, @@ -48940,7 +61719,10 @@ "plasmid_name": "pAG305GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14233", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -48952,7 +61734,10 @@ "plasmid_name": "pLX304 SLC2A1", "sequence-type": "addgene-full", "addgene_id": "193691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193691.addgene-full.gb" }, @@ -48961,7 +61746,10 @@ "plasmid_name": "pLenti CMV/TO Zeo DEST (644-1)", "sequence-type": "addgene-full", "addgene_id": "17294", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17294.addgene-full.gb" }, @@ -48970,7 +61758,10 @@ "plasmid_name": "pDL187", "sequence-type": "addgene-full", "addgene_id": "175933", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175933.addgene-full.gb" }, @@ -48979,7 +61770,9 @@ "plasmid_name": "pMpGWB326", "sequence-type": "depositor-full", "addgene_id": "68654", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68654.depositor-full.gb" }, @@ -48988,7 +61781,10 @@ "plasmid_name": "C122-E54: mRuby3", "sequence-type": "addgene-full", "addgene_id": "162899", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -49000,7 +61796,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST EIF2C4", "sequence-type": "depositor-full", "addgene_id": "19890", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19890.depositor-full.gb" }, @@ -49009,7 +61808,10 @@ "plasmid_name": "pLenti-Zyxin-Full Length (aa1-564)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187692", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187692.addgene-full.gb" }, @@ -49018,7 +61820,6 @@ "plasmid_name": "IDG_CACNB2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161684", - "references": [], "kit": null, "file": "data/addgene_plasmids/161684.addgene-full.gb" }, @@ -49027,7 +61828,10 @@ "plasmid_name": "mTALEAD ATP6-2-2", "sequence-type": "addgene-full", "addgene_id": "210830", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "file": "data/addgene_plasmids/210830.addgene-full.gb" }, @@ -49036,7 +61840,10 @@ "plasmid_name": "pHAGE-IGF1R-G639R", "sequence-type": "addgene-full", "addgene_id": "116415", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116415.addgene-full.gb" }, @@ -49045,7 +61852,10 @@ "plasmid_name": "PE_28: Plux_lac_tet_eG::sfYFP", "sequence-type": "addgene-full", "addgene_id": "104889", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104889.addgene-full.gb" }, @@ -49054,7 +61864,10 @@ "plasmid_name": "2xmyc-RAB35", "sequence-type": "addgene-full", "addgene_id": "164632", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164632.addgene-full.gb" }, @@ -49063,7 +61876,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-MAP1LC3B", "sequence-type": "addgene-full", "addgene_id": "175753", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175753.addgene-full.gb" }, @@ -49072,7 +61888,10 @@ "plasmid_name": "pLenti6.3delta4 GPR3-V5", "sequence-type": "addgene-full", "addgene_id": "172601", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02433-2", + "https://www.ncbi.nlm.nih.gov/pubmed/34302056" + ], "kit": null, "file": "data/addgene_plasmids/172601.addgene-full.gb" }, @@ -49081,7 +61900,10 @@ "plasmid_name": "pHAGE-PTEN-G127R", "sequence-type": "addgene-full", "addgene_id": "116621", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116621.addgene-full.gb" }, @@ -49090,7 +61912,10 @@ "plasmid_name": "pENTR2-L3-SfoI-iRFP713-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141023", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141023.addgene-full.gb" }, @@ -49099,7 +61924,10 @@ "plasmid_name": "pDONR221_SLCO5A1", "sequence-type": "addgene-full", "addgene_id": "132249", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132249.addgene-full.gb" }, @@ -49108,7 +61936,10 @@ "plasmid_name": "pMK-Cas9-gate", "sequence-type": "addgene-full", "addgene_id": "113743", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -49120,7 +61951,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp2", "sequence-type": "depositor-full", "addgene_id": "168889", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168889.depositor-full.gb" }, @@ -49129,7 +61963,10 @@ "plasmid_name": "pENTR-R4R3-3xmRuby-N", "sequence-type": "depositor-full", "addgene_id": "113754", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -49141,7 +61978,10 @@ "plasmid_name": "pDONR221-SLC22A24_STOP", "sequence-type": "depositor-full", "addgene_id": "161166", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161166.depositor-full.gb" }, @@ -49150,7 +61990,10 @@ "plasmid_name": "pCFJ2259 - Intron GG2 - 900 bp", "sequence-type": "addgene-full", "addgene_id": "159881", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159881.addgene-full.gb" }, @@ -49159,7 +62002,10 @@ "plasmid_name": "BirA-Myc_N_ETS1", "sequence-type": "addgene-full", "addgene_id": "167700", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167700.addgene-full.gb" }, @@ -49168,7 +62014,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO L1-R5", "sequence-type": "depositor-full", "addgene_id": "62099", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62099.depositor-full.gb" }, @@ -49177,7 +62026,6 @@ "plasmid_name": "pAG416-GAL-FUS-G156E", "sequence-type": "addgene-full", "addgene_id": "181716", - "references": [], "kit": null, "file": "data/addgene_plasmids/181716.addgene-full.gb" }, @@ -49186,7 +62034,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS-Ala271 hygro", "sequence-type": "addgene-full", "addgene_id": "158637", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158637.addgene-full.gb" }, @@ -49195,7 +62046,10 @@ "plasmid_name": "pLenti6-DEST PINK1-V5 WT", "sequence-type": "addgene-full", "addgene_id": "13320", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0500617102", + "https://www.ncbi.nlm.nih.gov/pubmed/15824318" + ], "kit": null, "file": "data/addgene_plasmids/13320.addgene-full.gb" }, @@ -49204,7 +62058,6 @@ "plasmid_name": "MECP2 - E282G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216600", - "references": [], "kit": null, "file": "data/addgene_plasmids/216600.addgene-full.gb" }, @@ -49213,7 +62066,10 @@ "plasmid_name": "pDONR221-SLC9B2_STOP", "sequence-type": "depositor-full", "addgene_id": "161401", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161401.depositor-full.gb" }, @@ -49222,7 +62078,10 @@ "plasmid_name": "pKR2.40", "sequence-type": "depositor-full", "addgene_id": "26952", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2008.07.008", + "https://www.ncbi.nlm.nih.gov/pubmed/18692039" + ], "kit": null, "file": "data/addgene_plasmids/26952.depositor-full.gb" }, @@ -49231,7 +62090,10 @@ "plasmid_name": "pGL2209", "sequence-type": "addgene-full", "addgene_id": "137050", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-9210-2_10", + "https://www.ncbi.nlm.nih.gov/pubmed/30980305" + ], "kit": null, "file": "data/addgene_plasmids/137050.addgene-full.gb" }, @@ -49240,7 +62102,10 @@ "plasmid_name": "E3_pENTR_L3-L2_NG_G1333-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171733", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171733.addgene-full.gb" }, @@ -49249,7 +62114,10 @@ "plasmid_name": "pT3-EF1a-Bmi1", "sequence-type": "addgene-full", "addgene_id": "31783", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-09-0333", + "https://www.ncbi.nlm.nih.gov/pubmed/19934271" + ], "kit": null, "file": "data/addgene_plasmids/31783.addgene-full.gb" }, @@ -49258,7 +62126,10 @@ "plasmid_name": "pWS931", "sequence-type": "addgene-full", "addgene_id": "123053", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123053.addgene-full.gb" }, @@ -49267,7 +62138,10 @@ "plasmid_name": "pDONR221_SLC35G3", "sequence-type": "addgene-full", "addgene_id": "132132", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132132.addgene-full.gb" }, @@ -49276,7 +62150,6 @@ "plasmid_name": "pcDNA3.1-ccdB-3xFLAG", "sequence-type": "addgene-full", "addgene_id": "214984", - "references": [], "kit": null, "file": "data/addgene_plasmids/214984.addgene-full.gb" }, @@ -49285,7 +62158,10 @@ "plasmid_name": "pDONR223_CLOCK_WT", "sequence-type": "addgene-full", "addgene_id": "82247", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82247.addgene-full.gb" }, @@ -49294,7 +62170,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0403-luc2", "sequence-type": "addgene-full", "addgene_id": "214630", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214630.addgene-full.gb" }, @@ -49303,7 +62182,10 @@ "plasmid_name": "pDONR223-TYRO3", "sequence-type": "addgene-full", "addgene_id": "23916", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -49315,7 +62197,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-BRSK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135269", - "references": [], "kit": null, "file": "data/addgene_plasmids/135269.addgene-full.gb" }, @@ -49324,7 +62205,6 @@ "plasmid_name": "IDG_CACNG3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161622", - "references": [], "kit": null, "file": "data/addgene_plasmids/161622.addgene-full.gb" }, @@ -49333,7 +62213,10 @@ "plasmid_name": "pYPQ150-x3.7", "sequence-type": "addgene-full", "addgene_id": "124308", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "file": "data/addgene_plasmids/124308.addgene-full.gb" }, @@ -49342,7 +62225,10 @@ "plasmid_name": "pLenti-PGK-Venus-Fluc (puro)", "sequence-type": "addgene-full", "addgene_id": "140328", - "references": [], + "references": [ + "https://doi.org/10.1093/noajnl/vdaa134", + "https://www.ncbi.nlm.nih.gov/pubmed/33241215" + ], "kit": null, "file": "data/addgene_plasmids/140328.addgene-full.gb" }, @@ -49351,7 +62237,10 @@ "plasmid_name": "pDONR P4-P1R-EGFP", "sequence-type": "depositor-full", "addgene_id": "48348", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -49363,7 +62252,10 @@ "plasmid_name": "DD-Cas9 with filler sequence and Cre-ERT2 (EDCICE)", "sequence-type": "addgene-full", "addgene_id": "90086", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms14370", + "https://www.ncbi.nlm.nih.gov/pubmed/28224990" + ], "kit": null, "file": "data/addgene_plasmids/90086.addgene-full.gb" }, @@ -49372,7 +62264,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir28-wt", "sequence-type": "depositor-full", "addgene_id": "46687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46687.depositor-full.gb" }, @@ -49381,7 +62276,10 @@ "plasmid_name": "pCK033 p5E desma MCS", "sequence-type": "addgene-full", "addgene_id": "195948", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195948.addgene-full.gb" }, @@ -49390,7 +62288,10 @@ "plasmid_name": "pEntry_HCoV-NL63-Protein3", "sequence-type": "depositor-full", "addgene_id": "168923", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168923.depositor-full.gb" }, @@ -49399,7 +62300,10 @@ "plasmid_name": "pDONR221_SLC25A3", "sequence-type": "addgene-full", "addgene_id": "132040", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132040.addgene-full.gb" }, @@ -49408,7 +62312,10 @@ "plasmid_name": "pENTR-L5-EYFP-L2", "sequence-type": "depositor-full", "addgene_id": "32417", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32417.depositor-full.gb" }, @@ -49417,7 +62324,6 @@ "plasmid_name": "pDONR221-btg3", "sequence-type": "addgene-full", "addgene_id": "192735", - "references": [], "kit": null, "file": "data/addgene_plasmids/192735.addgene-full.gb" }, @@ -49426,7 +62332,10 @@ "plasmid_name": "pMuLE ENTR SV40-hCas9 L3-L2", "sequence-type": "depositor-full", "addgene_id": "62133", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62133.depositor-full.gb" }, @@ -49435,7 +62344,6 @@ "plasmid_name": "R777-E180 Hs.PIK3R5-nostop", "sequence-type": "depositor-full", "addgene_id": "70464", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -49447,7 +62355,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-PRDX1", "sequence-type": "addgene-full", "addgene_id": "38086", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38086.addgene-full.gb" }, @@ -49456,7 +62367,6 @@ "plasmid_name": "pAG426GAL-MERS-CoV_PLP", "sequence-type": "addgene-full", "addgene_id": "203508", - "references": [], "kit": null, "file": "data/addgene_plasmids/203508.addgene-full.gb" }, @@ -49465,7 +62375,10 @@ "plasmid_name": "pDONR221_SLC25A27", "sequence-type": "depositor-full", "addgene_id": "132004", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132004.depositor-full.gb" }, @@ -49474,7 +62387,10 @@ "plasmid_name": "pSF464", "sequence-type": "addgene-full", "addgene_id": "167672", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167672.addgene-full.gb" }, @@ -49483,7 +62399,10 @@ "plasmid_name": "pHAGE-MAP2K1-P124S", "sequence-type": "addgene-full", "addgene_id": "116428", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116428.addgene-full.gb" }, @@ -49492,7 +62411,10 @@ "plasmid_name": "C413-E11: attB4-Grp78p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162970", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -49504,7 +62426,10 @@ "plasmid_name": "p6VP1", "sequence-type": "depositor-full", "addgene_id": "24725", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2010.05.006", + "https://www.ncbi.nlm.nih.gov/pubmed/20542254" + ], "kit": null, "file": "data/addgene_plasmids/24725.depositor-full.gb" }, @@ -49513,7 +62438,10 @@ "plasmid_name": "LIIalpha F 1-2 RNAi", "sequence-type": "depositor-full", "addgene_id": "54404", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54404.depositor-full.gb" }, @@ -49522,7 +62450,10 @@ "plasmid_name": "pUN378 - pTRV2-CrGLK", "sequence-type": "addgene-full", "addgene_id": "203888", - "references": [], + "references": [ + "https://doi.org/10.1007/s00299-024-03208-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38743349" + ], "kit": null, "file": "data/addgene_plasmids/203888.addgene-full.gb" }, @@ -49531,7 +62462,10 @@ "plasmid_name": "pENTR223-BMRF1(EA-D)", "sequence-type": "addgene-full", "addgene_id": "195807", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195807.addgene-full.gb" }, @@ -49540,7 +62474,10 @@ "plasmid_name": "pAG303GPD-ccdB", "sequence-type": "addgene-full", "addgene_id": "14134", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -49552,7 +62489,10 @@ "plasmid_name": "Flag-HA-OTUD4", "sequence-type": "addgene-full", "addgene_id": "22594", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22594.addgene-full.gb" }, @@ -49561,7 +62501,10 @@ "plasmid_name": "pDRf1-SweetTrac1", "sequence-type": "addgene-full", "addgene_id": "169083", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2119183119", + "https://www.ncbi.nlm.nih.gov/pubmed/35046045" + ], "kit": null, "file": "data/addgene_plasmids/169083.addgene-full.gb" }, @@ -49570,7 +62513,10 @@ "plasmid_name": "pcDNA3.1-ccdB-3xFLAG-V5", "sequence-type": "addgene-full", "addgene_id": "87063", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.047", + "https://www.ncbi.nlm.nih.gov/pubmed/22939624" + ], "kit": null, "file": "data/addgene_plasmids/87063.addgene-full.gb" }, @@ -49579,7 +62525,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-MOB1A", "sequence-type": "addgene-full", "addgene_id": "172988", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172988.addgene-full.gb" }, @@ -49588,7 +62537,10 @@ "plasmid_name": "pAG306GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14164", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -49600,7 +62552,10 @@ "plasmid_name": "pDONR221_SLC5A6", "sequence-type": "addgene-full", "addgene_id": "132194", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132194.addgene-full.gb" }, @@ -49609,7 +62564,10 @@ "plasmid_name": "1456_pDEST_miniTol2_R4-R2_Cryst-eGFP", "sequence-type": "addgene-full", "addgene_id": "171795", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "file": "data/addgene_plasmids/171795.addgene-full.gb" }, @@ -49618,7 +62576,10 @@ "plasmid_name": "pGKO2-Gateway", "sequence-type": "depositor-full", "addgene_id": "63618", - "references": [], + "references": [ + "https://doi.org/10.1016/j.fgb.2005.03.004", + "https://www.ncbi.nlm.nih.gov/pubmed/15893252" + ], "kit": null, "file": "data/addgene_plasmids/63618.depositor-full.gb" }, @@ -49627,7 +62588,10 @@ "plasmid_name": "pDONR221_UCP1", "sequence-type": "addgene-full", "addgene_id": "132274", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132274.addgene-full.gb" }, @@ -49636,7 +62600,10 @@ "plasmid_name": "MIS18A_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176973", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176973.addgene-full.gb" }, @@ -49645,7 +62612,6 @@ "plasmid_name": "g15s pD42", "sequence-type": "addgene-full", "addgene_id": "117465", - "references": [], "kit": null, "file": "data/addgene_plasmids/117465.addgene-full.gb" }, @@ -49654,7 +62620,10 @@ "plasmid_name": "pCR8/GW/TOPO-ELF1", "sequence-type": "addgene-full", "addgene_id": "98627", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98627.addgene-full.gb" }, @@ -49663,7 +62632,10 @@ "plasmid_name": "pLentiPGK Hygro DEST ERKKTRmCerulean3", "sequence-type": "addgene-full", "addgene_id": "90229", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "file": "data/addgene_plasmids/90229.addgene-full.gb" }, @@ -49672,7 +62644,10 @@ "plasmid_name": "pDONR223_OR2G6_p.N294Y", "sequence-type": "addgene-full", "addgene_id": "81348", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -49684,7 +62659,10 @@ "plasmid_name": "pDONR223_BMP2_WT", "sequence-type": "addgene-full", "addgene_id": "82101", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82101.addgene-full.gb" }, @@ -49693,7 +62671,10 @@ "plasmid_name": "pAG414GPD-FvCYP722C2(pYL878)", "sequence-type": "addgene-full", "addgene_id": "178299", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178299.addgene-full.gb" }, @@ -49702,7 +62683,10 @@ "plasmid_name": "tetO-NFYB", "sequence-type": "addgene-full", "addgene_id": "170697", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170697.addgene-full.gb" }, @@ -49711,7 +62695,10 @@ "plasmid_name": "pGWB551", "sequence-type": "depositor-full", "addgene_id": "74881", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74881.depositor-full.gb" }, @@ -49720,7 +62707,10 @@ "plasmid_name": "pAG304GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14399", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -49732,7 +62722,10 @@ "plasmid_name": "pHAGE-PIK3CD-E873K", "sequence-type": "addgene-full", "addgene_id": "116567", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116567.addgene-full.gb" }, @@ -49741,7 +62734,10 @@ "plasmid_name": "pDONR223_ZNF597_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83003", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83003.addgene-full.gb" }, @@ -49750,7 +62746,10 @@ "plasmid_name": "pHAGE-STK11-G56W", "sequence-type": "addgene-full", "addgene_id": "116687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116687.addgene-full.gb" }, @@ -49759,7 +62758,10 @@ "plasmid_name": "pEAHISMRSAMVAK", "sequence-type": "addgene-full", "addgene_id": "97000", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97000.addgene-full.gb" }, @@ -49768,7 +62770,10 @@ "plasmid_name": "pLenti CMV-IFP2.0 T2A HO1", "sequence-type": "depositor-full", "addgene_id": "59427", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms4626", + "https://www.ncbi.nlm.nih.gov/pubmed/24832154" + ], "kit": null, "file": "data/addgene_plasmids/59427.depositor-full.gb" }, @@ -49777,7 +62782,10 @@ "plasmid_name": "p35S::Cf-4-YFPn", "sequence-type": "addgene-full", "addgene_id": "86161", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "file": "data/addgene_plasmids/86161.addgene-full.gb" }, @@ -49786,7 +62794,10 @@ "plasmid_name": "pT2-cryR;snx5CE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90152", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90152.addgene-full.gb" }, @@ -49795,7 +62806,10 @@ "plasmid_name": "pAG306GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14403", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -49807,7 +62821,10 @@ "plasmid_name": "pDONR221-SVOPL_STOP", "sequence-type": "addgene-full", "addgene_id": "161416", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161416.addgene-full.gb" }, @@ -49816,7 +62833,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CAMKK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170577", - "references": [], "kit": null, "file": "data/addgene_plasmids/170577.addgene-full.gb" }, @@ -49825,7 +62841,10 @@ "plasmid_name": "pT2-cryR;mafbbCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90155", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90155.addgene-full.gb" }, @@ -49846,7 +62865,10 @@ "plasmid_name": "pDONR221-SLC7A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161411", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161411.addgene-full.gb" }, @@ -49855,7 +62877,10 @@ "plasmid_name": "pLX304-ERBB2", "sequence-type": "addgene-full", "addgene_id": "175846", - "references": [], + "references": [ + "https://doi.org/10.1038/leu.2016.173", + "https://www.ncbi.nlm.nih.gov/pubmed/27416908" + ], "kit": null, "file": "data/addgene_plasmids/175846.addgene-full.gb" }, @@ -49864,7 +62889,10 @@ "plasmid_name": "pDONR223 LC3A WT", "sequence-type": "addgene-full", "addgene_id": "123069", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123069.addgene-full.gb" }, @@ -49873,7 +62901,10 @@ "plasmid_name": "pHAGE-SIRPB1-R240C", "sequence-type": "addgene-full", "addgene_id": "116680", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116680.addgene-full.gb" }, @@ -49882,7 +62913,10 @@ "plasmid_name": "pDONR221_SLC35G5", "sequence-type": "addgene-full", "addgene_id": "132108", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132108.addgene-full.gb" }, @@ -49891,7 +62925,10 @@ "plasmid_name": "p35S::AtSOBIR1-mCherry", "sequence-type": "addgene-full", "addgene_id": "86166", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "file": "data/addgene_plasmids/86166.addgene-full.gb" }, @@ -49900,7 +62937,10 @@ "plasmid_name": "p221a-GUS", "sequence-type": "depositor-full", "addgene_id": "71263", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71263.depositor-full.gb" }, @@ -49909,7 +62949,10 @@ "plasmid_name": "pHAGE-PIK3CB-R604Gfs*4", "sequence-type": "addgene-full", "addgene_id": "116560", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116560.addgene-full.gb" }, @@ -49918,7 +62961,10 @@ "plasmid_name": "Crimson/P2A-ICP8 (pSLIK1)", "sequence-type": "addgene-full", "addgene_id": "113856", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0200955", + "https://www.ncbi.nlm.nih.gov/pubmed/30110337" + ], "kit": null, "file": "data/addgene_plasmids/113856.addgene-full.gb" }, @@ -49927,7 +62973,10 @@ "plasmid_name": "pDONR223-ZNF467", "sequence-type": "addgene-full", "addgene_id": "88643", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88643.addgene-full.gb" }, @@ -49936,7 +62985,10 @@ "plasmid_name": "pDONR223_ZBTB24_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83004", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83004.addgene-full.gb" }, @@ -49945,7 +62997,10 @@ "plasmid_name": "tetO-HAND2", "sequence-type": "addgene-full", "addgene_id": "170690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170690.addgene-full.gb" }, @@ -49954,7 +63009,10 @@ "plasmid_name": "pSEM230 - pEXP[Pmlc-1 | ceGFP(2xNLS) | cbr-tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159794", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000302", + "https://www.ncbi.nlm.nih.gov/pubmed/32908967" + ], "kit": null, "file": "data/addgene_plasmids/159794.addgene-full.gb" }, @@ -49963,7 +63021,10 @@ "plasmid_name": "Rae1-pDONR221", "sequence-type": "addgene-full", "addgene_id": "124240", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbamcr.2017.05.020", + "https://www.ncbi.nlm.nih.gov/pubmed/28554770" + ], "kit": null, "file": "data/addgene_plasmids/124240.addgene-full.gb" }, @@ -49972,7 +63033,10 @@ "plasmid_name": "RUNX1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176974", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176974.addgene-full.gb" }, @@ -49981,7 +63045,10 @@ "plasmid_name": "pCR8/GW/TOPO-TBX20a", "sequence-type": "addgene-full", "addgene_id": "98620", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98620.addgene-full.gb" }, @@ -49990,7 +63057,10 @@ "plasmid_name": "pDONR223_CSNK1A1_WT", "sequence-type": "addgene-full", "addgene_id": "82106", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82106.addgene-full.gb" }, @@ -49999,7 +63069,10 @@ "plasmid_name": "pME-6MTnlstdTomato2A", "sequence-type": "depositor-full", "addgene_id": "67685", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137919", + "https://www.ncbi.nlm.nih.gov/pubmed/27578780" + ], "kit": null, "file": "data/addgene_plasmids/67685.depositor-full.gb" }, @@ -50008,7 +63081,10 @@ "plasmid_name": "p3E_afp_UTR", "sequence-type": "addgene-full", "addgene_id": "199341", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "file": "data/addgene_plasmids/199341.addgene-full.gb" }, @@ -50017,7 +63093,10 @@ "plasmid_name": "469_pME_iCre", "sequence-type": "addgene-full", "addgene_id": "171792", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "file": "data/addgene_plasmids/171792.addgene-full.gb" }, @@ -50026,7 +63105,10 @@ "plasmid_name": "pLX301", "sequence-type": "addgene-full", "addgene_id": "25895", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "file": "data/addgene_plasmids/25895.addgene-full.gb" }, @@ -50035,7 +63117,6 @@ "plasmid_name": "R777-E222 Hs.RALGDS-nostop", "sequence-type": "depositor-full", "addgene_id": "70506", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -50047,7 +63128,10 @@ "plasmid_name": "pDONR221_SPNS1", "sequence-type": "addgene-full", "addgene_id": "132273", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132273.addgene-full.gb" }, @@ -50056,7 +63140,10 @@ "plasmid_name": "pBAV150", "sequence-type": "addgene-full", "addgene_id": "79764", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-2958.2006.05350.x", + "https://www.ncbi.nlm.nih.gov/pubmed/16942603" + ], "kit": null, "file": "data/addgene_plasmids/79764.addgene-full.gb" }, @@ -50065,7 +63152,10 @@ "plasmid_name": "pDONR221_SLC5A1", "sequence-type": "addgene-full", "addgene_id": "132193", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132193.addgene-full.gb" }, @@ -50074,7 +63164,10 @@ "plasmid_name": "pENTR2-L3-SfoI-Venus-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141019", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141019.addgene-full.gb" }, @@ -50083,7 +63176,10 @@ "plasmid_name": "GFP-ASH1L", "sequence-type": "addgene-full", "addgene_id": "65369", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65369.addgene-full.gb" }, @@ -50092,7 +63188,10 @@ "plasmid_name": "C453-E18: attB4-polyhedrinp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162977", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -50104,7 +63203,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 V192S", "sequence-type": "addgene-full", "addgene_id": "175769", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175769.addgene-full.gb" }, @@ -50113,7 +63215,10 @@ "plasmid_name": "pENTR223-BGLF2", "sequence-type": "addgene-full", "addgene_id": "195800", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195800.addgene-full.gb" }, @@ -50122,7 +63227,10 @@ "plasmid_name": "pcDNA3.1-3xFLAG-V5-ccdB", "sequence-type": "addgene-full", "addgene_id": "87064", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.047", + "https://www.ncbi.nlm.nih.gov/pubmed/22939624" + ], "kit": null, "file": "data/addgene_plasmids/87064.addgene-full.gb" }, @@ -50131,7 +63239,10 @@ "plasmid_name": "Flag-HA-DUB3", "sequence-type": "addgene-full", "addgene_id": "22593", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22593.addgene-full.gb" }, @@ -50140,7 +63251,10 @@ "plasmid_name": "UAS::PTPRDb-DN-GFP", "sequence-type": "depositor-full", "addgene_id": "37112", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.01.040", + "https://www.ncbi.nlm.nih.gov/pubmed/22326027" + ], "kit": null, "file": "data/addgene_plasmids/37112.depositor-full.gb" }, @@ -50149,7 +63263,10 @@ "plasmid_name": "pSF280", "sequence-type": "addgene-full", "addgene_id": "167675", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167675.addgene-full.gb" }, @@ -50158,7 +63275,10 @@ "plasmid_name": "pDONR-IAA14_no stop", "sequence-type": "depositor-full", "addgene_id": "83852", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83852.depositor-full.gb" }, @@ -50167,7 +63287,10 @@ "plasmid_name": "pLenti-V5-KDM3A-mut", "sequence-type": "addgene-full", "addgene_id": "82332", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gku1298", + "https://www.ncbi.nlm.nih.gov/pubmed/25488809" + ], "kit": null, "file": "data/addgene_plasmids/82332.addgene-full.gb" }, @@ -50176,7 +63299,10 @@ "plasmid_name": "pDL73", "sequence-type": "addgene-full", "addgene_id": "175909", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175909.addgene-full.gb" }, @@ -50185,7 +63311,10 @@ "plasmid_name": "pDONR221_SLC22A18", "sequence-type": "addgene-full", "addgene_id": "132047", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132047.addgene-full.gb" }, @@ -50194,7 +63323,6 @@ "plasmid_name": "pDONR221-nrip1b", "sequence-type": "addgene-full", "addgene_id": "192732", - "references": [], "kit": null, "file": "data/addgene_plasmids/192732.addgene-full.gb" }, @@ -50203,7 +63331,6 @@ "plasmid_name": "pDONR221-DPP4", "sequence-type": "addgene-full", "addgene_id": "158439", - "references": [], "kit": null, "file": "data/addgene_plasmids/158439.addgene-full.gb" }, @@ -50212,7 +63339,10 @@ "plasmid_name": "pHAGE-KDR", "sequence-type": "addgene-full", "addgene_id": "116754", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116754.addgene-full.gb" }, @@ -50221,7 +63351,6 @@ "plasmid_name": "R777-E264 Hs.RASSF6-nostop", "sequence-type": "depositor-full", "addgene_id": "70548", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -50233,7 +63362,6 @@ "plasmid_name": "IDG_SCN3B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161625", - "references": [], "kit": null, "file": "data/addgene_plasmids/161625.addgene-full.gb" }, @@ -50242,7 +63370,10 @@ "plasmid_name": "pJB332", "sequence-type": "addgene-full", "addgene_id": "115949", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115949.addgene-full.gb" }, @@ -50251,7 +63382,10 @@ "plasmid_name": "pYPQ153", "sequence-type": "depositor-full", "addgene_id": "69304", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69304.depositor-full.gb" }, @@ -50260,7 +63394,6 @@ "plasmid_name": "Hs.HRAS G13D", "sequence-type": "depositor-full", "addgene_id": "83185", - "references": [], "kit": null, "file": "data/addgene_plasmids/83185.depositor-full.gb" }, @@ -50269,7 +63402,10 @@ "plasmid_name": "pT2-cryR;yrkP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90168", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90168.addgene-full.gb" }, @@ -50278,7 +63414,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0484-luc2", "sequence-type": "addgene-full", "addgene_id": "214637", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214637.addgene-full.gb" }, @@ -50287,7 +63426,10 @@ "plasmid_name": "pDONR223_WNT5A_WT", "sequence-type": "addgene-full", "addgene_id": "82240", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82240.addgene-full.gb" }, @@ -50296,7 +63438,10 @@ "plasmid_name": "pT3-EF1a-c-Met", "sequence-type": "addgene-full", "addgene_id": "31784", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0706578104", + "https://www.ncbi.nlm.nih.gov/pubmed/17785413" + ], "kit": null, "file": "data/addgene_plasmids/31784.addgene-full.gb" }, @@ -50305,7 +63450,10 @@ "plasmid_name": "pWS930", "sequence-type": "addgene-full", "addgene_id": "123054", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123054.addgene-full.gb" }, @@ -50314,7 +63462,10 @@ "plasmid_name": "pDONR221_SLC35A3", "sequence-type": "addgene-full", "addgene_id": "132135", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132135.addgene-full.gb" }, @@ -50323,7 +63474,10 @@ "plasmid_name": "pLX307-VHL-3F-BirA", "sequence-type": "addgene-full", "addgene_id": "220147", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-024-01590-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38514884" + ], "kit": null, "file": "data/addgene_plasmids/220147.addgene-full.gb" }, @@ -50332,7 +63486,6 @@ "plasmid_name": "pREP41xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79017", - "references": [], "kit": null, "file": "data/addgene_plasmids/79017.depositor-full.gb" }, @@ -50341,7 +63494,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS-Ala148", "sequence-type": "addgene-full", "addgene_id": "158630", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158630.addgene-full.gb" }, @@ -50350,7 +63506,10 @@ "plasmid_name": "pLX304-Flag-APEX2-NES", "sequence-type": "addgene-full", "addgene_id": "92158", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.24463", + "https://www.ncbi.nlm.nih.gov/pubmed/28441135" + ], "kit": null, "file": "data/addgene_plasmids/92158.addgene-full.gb" }, @@ -50359,7 +63518,6 @@ "plasmid_name": "BRAF - R146W in pENTR", "sequence-type": "addgene-full", "addgene_id": "216607", - "references": [], "kit": null, "file": "data/addgene_plasmids/216607.addgene-full.gb" }, @@ -50368,7 +63526,10 @@ "plasmid_name": "pCM5.64", "sequence-type": "depositor-full", "addgene_id": "19372", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19372.depositor-full.gb" }, @@ -50377,7 +63538,10 @@ "plasmid_name": "E3_pENTR_L3-L2_NG_G1397-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171734", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171734.addgene-full.gb" }, @@ -50386,7 +63550,10 @@ "plasmid_name": "pDest-623 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161878", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -50398,7 +63565,10 @@ "plasmid_name": "LIIbeta F 1-2", "sequence-type": "depositor-full", "addgene_id": "54356", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54356.depositor-full.gb" }, @@ -50407,7 +63577,10 @@ "plasmid_name": "pMXs-ms-Sox7", "sequence-type": "depositor-full", "addgene_id": "50780", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "file": "data/addgene_plasmids/50780.depositor-full.gb" }, @@ -50416,7 +63589,6 @@ "plasmid_name": "pAG416-GAL-FUS", "sequence-type": "addgene-full", "addgene_id": "181711", - "references": [], "kit": null, "file": "data/addgene_plasmids/181711.addgene-full.gb" }, @@ -50425,7 +63597,10 @@ "plasmid_name": "pDONR223_C15orf23_p.P26L", "sequence-type": "addgene-full", "addgene_id": "81372", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -50437,7 +63612,10 @@ "plasmid_name": "pGWB507", "sequence-type": "depositor-full", "addgene_id": "74849", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74849.depositor-full.gb" }, @@ -50446,7 +63624,10 @@ "plasmid_name": "SUMO3_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176949", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176949.addgene-full.gb" }, @@ -50455,7 +63636,10 @@ "plasmid_name": "pAG304GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14351", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -50467,7 +63651,10 @@ "plasmid_name": "pCFJ1117 - [4-1] - Promoter - Psmu-1(no_atg)", "sequence-type": "addgene-full", "addgene_id": "159886", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159886.addgene-full.gb" }, @@ -50476,7 +63663,10 @@ "plasmid_name": "pJRA105", "sequence-type": "addgene-full", "addgene_id": "209338", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209338.addgene-full.gb" }, @@ -50485,7 +63675,10 @@ "plasmid_name": "pZeo-Cas9-gate", "sequence-type": "addgene-full", "addgene_id": "113744", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -50497,7 +63690,10 @@ "plasmid_name": "pHAGE-PTEN-L325R", "sequence-type": "addgene-full", "addgene_id": "116626", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116626.addgene-full.gb" }, @@ -50506,7 +63702,6 @@ "plasmid_name": "R777-E094 Hs.FNTA-nostop", "sequence-type": "depositor-full", "addgene_id": "70378", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -50518,7 +63713,10 @@ "plasmid_name": "pENTR2-L3-SfoI-IRES-EGFP-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141024", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141024.addgene-full.gb" }, @@ -50527,7 +63725,10 @@ "plasmid_name": "pEnt R3L2-MCS", "sequence-type": "depositor-full", "addgene_id": "26799", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "file": "data/addgene_plasmids/26799.depositor-full.gb" }, @@ -50536,7 +63737,10 @@ "plasmid_name": "pENTR223-BXRF1", "sequence-type": "addgene-full", "addgene_id": "195789", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195789.addgene-full.gb" }, @@ -50545,7 +63749,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-MAP1LC3BK51A", "sequence-type": "addgene-full", "addgene_id": "175754", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175754.addgene-full.gb" }, @@ -50554,7 +63761,10 @@ "plasmid_name": "mTALEAD 16S rRNA-1139T8C", "sequence-type": "addgene-full", "addgene_id": "210837", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "file": "data/addgene_plasmids/210837.addgene-full.gb" }, @@ -50563,7 +63773,10 @@ "plasmid_name": "pHAGE-IGF1R-D1239H", "sequence-type": "addgene-full", "addgene_id": "116412", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116412.addgene-full.gb" }, @@ -50572,7 +63785,9 @@ "plasmid_name": "pMpGWB131", "sequence-type": "depositor-full", "addgene_id": "68585", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68585.depositor-full.gb" }, @@ -50581,7 +63796,10 @@ "plasmid_name": "pLenti-Zyxin-C (aa139-371)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187695", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187695.addgene-full.gb" }, @@ -50590,7 +63808,6 @@ "plasmid_name": "IDG_CACNA2D3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161683", - "references": [], "kit": null, "file": "data/addgene_plasmids/161683.addgene-full.gb" }, @@ -50599,7 +63816,10 @@ "plasmid_name": "pLenti CMV/TO Puro DEST (670-1)", "sequence-type": "addgene-full", "addgene_id": "17293", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17293.addgene-full.gb" }, @@ -50608,7 +63828,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term SRSF1", "sequence-type": "addgene-full", "addgene_id": "187575", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187575.addgene-full.gb" }, @@ -50617,7 +63840,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16 E7 Mutant 2", "sequence-type": "addgene-full", "addgene_id": "191546", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "file": "data/addgene_plasmids/191546.addgene-full.gb" }, @@ -50626,7 +63852,10 @@ "plasmid_name": "pHAGE-XRN1__PRKCE", "sequence-type": "addgene-full", "addgene_id": "116846", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116846.addgene-full.gb" }, @@ -50635,7 +63864,10 @@ "plasmid_name": "PB-TAC-Cas9", "sequence-type": "addgene-full", "addgene_id": "120352", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2018.12.008", + "https://www.ncbi.nlm.nih.gov/pubmed/30639212" + ], "kit": null, "file": "data/addgene_plasmids/120352.addgene-full.gb" }, @@ -50644,7 +63876,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab18", "sequence-type": "addgene-full", "addgene_id": "166431", - "references": [], "kit": null, "file": "data/addgene_plasmids/166431.addgene-full.gb" }, @@ -50653,7 +63884,10 @@ "plasmid_name": "pGWB413", "sequence-type": "depositor-full", "addgene_id": "74807", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74807.depositor-full.gb" }, @@ -50662,7 +63896,10 @@ "plasmid_name": "pcDNA3 WT MYOC eGLuc2 FLAG", "sequence-type": "addgene-full", "addgene_id": "192820", - "references": [], + "references": [ + "https://doi.org/10.1080/02713683.2022.2047205", + "https://www.ncbi.nlm.nih.gov/pubmed/35196929" + ], "kit": null, "file": "data/addgene_plasmids/192820.addgene-full.gb" }, @@ -50671,7 +63908,10 @@ "plasmid_name": "pHAGE-PDGFRA", "sequence-type": "addgene-full", "addgene_id": "116769", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116769.addgene-full.gb" }, @@ -50680,7 +63920,10 @@ "plasmid_name": "pYPQ146-ZmUbi-tRNA", "sequence-type": "addgene-full", "addgene_id": "158404", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00953-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34168320" + ], "kit": null, "file": "data/addgene_plasmids/158404.addgene-full.gb" }, @@ -50689,7 +63932,10 @@ "plasmid_name": "pMOS010: pLX304-CheRiff-GFP", "sequence-type": "depositor-full", "addgene_id": "62986", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3000", + "https://www.ncbi.nlm.nih.gov/pubmed/24952910" + ], "kit": null, "file": "data/addgene_plasmids/62986.depositor-full.gb" }, @@ -50698,7 +63944,9 @@ "plasmid_name": "pDestTol2-QUAS:GFP-CAAX", "sequence-type": "addgene-full", "addgene_id": "184813", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "file": "data/addgene_plasmids/184813.addgene-full.gb" }, @@ -50707,7 +63955,10 @@ "plasmid_name": "766 p3E-2A-nlsmCherrypA", "sequence-type": "addgene-full", "addgene_id": "195972", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195972.addgene-full.gb" }, @@ -50716,7 +63967,10 @@ "plasmid_name": "pLenti_CMV_Puro_SFB_GNB1L_WD 7 deletion", "sequence-type": "addgene-full", "addgene_id": "224388", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.07.004", + "https://www.ncbi.nlm.nih.gov/pubmed/37541219" + ], "kit": null, "file": "data/addgene_plasmids/224388.addgene-full.gb" }, @@ -50725,7 +63979,10 @@ "plasmid_name": "pDEST40-2XHA-Src-KD", "sequence-type": "addgene-full", "addgene_id": "140312", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140312.addgene-full.gb" }, @@ -50734,7 +63991,6 @@ "plasmid_name": "R777-E052 Hs.ECT2-nostop", "sequence-type": "depositor-full", "addgene_id": "70336", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -50746,7 +64002,6 @@ "plasmid_name": "p667-UBC-BRSK2-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135253", - "references": [], "kit": null, "file": "data/addgene_plasmids/135253.addgene-full.gb" }, @@ -50755,7 +64010,6 @@ "plasmid_name": "IDG_KCNS3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161618", - "references": [], "kit": null, "file": "data/addgene_plasmids/161618.addgene-full.gb" }, @@ -50764,7 +64018,10 @@ "plasmid_name": "pDONR221_SLC7A3", "sequence-type": "addgene-full", "addgene_id": "132301", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201404", + "https://www.ncbi.nlm.nih.gov/pubmed/36114003" + ], "kit": null, "file": "data/addgene_plasmids/132301.addgene-full.gb" }, @@ -50773,7 +64030,10 @@ "plasmid_name": "pACYCDuet_DL121_WTTS", "sequence-type": "addgene-full", "addgene_id": "171954", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.68346", + "https://www.ncbi.nlm.nih.gov/pubmed/34132193" + ], "kit": null, "file": "data/addgene_plasmids/171954.addgene-full.gb" }, @@ -50782,7 +64042,6 @@ "plasmid_name": "pENTR-CreStopDeleted", "sequence-type": "addgene-full", "addgene_id": "139546", - "references": [], "kit": null, "file": "data/addgene_plasmids/139546.addgene-full.gb" }, @@ -50791,7 +64050,10 @@ "plasmid_name": "pSK247", "sequence-type": "addgene-full", "addgene_id": "131148", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/29056345" + ], "kit": null, "file": "data/addgene_plasmids/131148.addgene-full.gb" }, @@ -50800,7 +64062,10 @@ "plasmid_name": "pCMU-ERr", "sequence-type": "depositor-full", "addgene_id": "61170", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61170.depositor-full.gb" }, @@ -50809,7 +64074,10 @@ "plasmid_name": "p3E-rab3db", "sequence-type": "addgene-full", "addgene_id": "109707", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109707.addgene-full.gb" }, @@ -50818,7 +64086,10 @@ "plasmid_name": "TFORF3147", "sequence-type": "addgene-full", "addgene_id": "144623", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144623.addgene-full.gb" }, @@ -50827,7 +64098,10 @@ "plasmid_name": "pBA cHA-XERICO", "sequence-type": "addgene-full", "addgene_id": "118666", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118666.addgene-full.gb" }, @@ -50836,7 +64110,10 @@ "plasmid_name": "RWDD2B_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177001", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/177001.addgene-full.gb" }, @@ -50845,7 +64122,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS2", "sequence-type": "depositor-full", "addgene_id": "20241", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20241.depositor-full.gb" }, @@ -50854,7 +64134,9 @@ "plasmid_name": "pDONR221-DDX1", "sequence-type": "addgene-full", "addgene_id": "166160", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166160.addgene-full.gb" }, @@ -50863,7 +64145,10 @@ "plasmid_name": "pENTR223-BNRF1", "sequence-type": "addgene-full", "addgene_id": "198580", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198580.addgene-full.gb" }, @@ -50872,7 +64157,6 @@ "plasmid_name": "pCM1.52", "sequence-type": "depositor-full", "addgene_id": "19592", - "references": [], "kit": null, "file": "data/addgene_plasmids/19592.depositor-full.gb" }, @@ -50881,7 +64165,10 @@ "plasmid_name": "pDONR221-SLCO2B1_STOP", "sequence-type": "addgene-full", "addgene_id": "161032", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161032.addgene-full.gb" }, @@ -50890,7 +64177,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.P364L", "sequence-type": "addgene-full", "addgene_id": "81417", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -50902,7 +64192,10 @@ "plasmid_name": "pEPYCeGM0011", "sequence-type": "addgene-full", "addgene_id": "196145", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196145.addgene-full.gb" }, @@ -50911,7 +64204,10 @@ "plasmid_name": "pCLXEBR-pTF-cKit", "sequence-type": "addgene-full", "addgene_id": "114293", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "file": "data/addgene_plasmids/114293.addgene-full.gb" }, @@ -50920,7 +64216,9 @@ "plasmid_name": "pME-memGFP-P2A", "sequence-type": "depositor-full", "addgene_id": "80809", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80809.depositor-full.gb" }, @@ -50929,7 +64227,9 @@ "plasmid_name": "pPB-cT3G-cERP2-UBB", "sequence-type": "addgene-full", "addgene_id": "222569", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222569.addgene-full.gb" }, @@ -50938,7 +64238,10 @@ "plasmid_name": "pYPQ283 (MlCas12a)", "sequence-type": "addgene-full", "addgene_id": "138115", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138115.addgene-full.gb" }, @@ -50947,7 +64250,10 @@ "plasmid_name": "pDONR221-kcnk6", "sequence-type": "addgene-full", "addgene_id": "208990", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208990.addgene-full.gb" }, @@ -50956,7 +64262,10 @@ "plasmid_name": "pDONR223_PIK3CG_WT", "sequence-type": "addgene-full", "addgene_id": "81843", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -50968,7 +64277,9 @@ "plasmid_name": "pLenti Dest PuroR R1-R2", "sequence-type": "addgene-full", "addgene_id": "84575", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "file": "data/addgene_plasmids/84575.addgene-full.gb" }, @@ -50977,7 +64288,10 @@ "plasmid_name": "pHAGE-BRAF-F247L", "sequence-type": "addgene-full", "addgene_id": "116143", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116143.addgene-full.gb" }, @@ -50986,7 +64300,10 @@ "plasmid_name": "p5e irg1", "sequence-type": "addgene-full", "addgene_id": "188698", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111817", + "https://www.ncbi.nlm.nih.gov/pubmed/36516756" + ], "kit": null, "file": "data/addgene_plasmids/188698.addgene-full.gb" }, @@ -50995,7 +64312,10 @@ "plasmid_name": "AAEL004777 Bursicon R", "sequence-type": "addgene-full", "addgene_id": "115391", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115391.addgene-full.gb" }, @@ -51004,7 +64324,9 @@ "plasmid_name": "pDONR221 hNLRP3 R262W (disease-associated mutation)", "sequence-type": "addgene-full", "addgene_id": "218647", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218647.addgene-full.gb" }, @@ -51013,7 +64335,10 @@ "plasmid_name": "TFORF3082", "sequence-type": "addgene-full", "addgene_id": "144558", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144558.addgene-full.gb" }, @@ -51034,7 +64359,6 @@ "plasmid_name": "R777-E314 Hs.SHC4-nostop", "sequence-type": "depositor-full", "addgene_id": "70598", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -51046,7 +64370,10 @@ "plasmid_name": "pDONR221-SLC6A13_STOP", "sequence-type": "addgene-full", "addgene_id": "161349", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161349.addgene-full.gb" }, @@ -51055,7 +64382,10 @@ "plasmid_name": "pDONR223_CGRRF1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82971", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82971.addgene-full.gb" }, @@ -51064,7 +64394,6 @@ "plasmid_name": "pDONR221-deltaUBA-short-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "195397", - "references": [], "kit": null, "file": "data/addgene_plasmids/195397.addgene-full.gb" }, @@ -51073,7 +64402,10 @@ "plasmid_name": "MAC3-NTRK3", "sequence-type": "addgene-full", "addgene_id": "222612", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "file": "data/addgene_plasmids/222612.addgene-full.gb" }, @@ -51082,7 +64414,10 @@ "plasmid_name": "IG901: pMVP (L5-L4) FLAG epitope tag", "sequence-type": "addgene-full", "addgene_id": "121701", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121701.addgene-full.gb" }, @@ -51091,7 +64426,10 @@ "plasmid_name": "pZMU-Dest", "sequence-type": "addgene-full", "addgene_id": "105089", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-580-4_34", + "https://www.ncbi.nlm.nih.gov/pubmed/24057391" + ], "kit": null, "file": "data/addgene_plasmids/105089.addgene-full.gb" }, @@ -51100,7 +64438,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST EIF2C2", "sequence-type": "depositor-full", "addgene_id": "19888", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19888.depositor-full.gb" }, @@ -51109,7 +64450,10 @@ "plasmid_name": "GPS-MYC", "sequence-type": "addgene-full", "addgene_id": "160130", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aav7259", + "https://www.ncbi.nlm.nih.gov/pubmed/31311847" + ], "kit": null, "file": "data/addgene_plasmids/160130.addgene-full.gb" }, @@ -51118,7 +64462,10 @@ "plasmid_name": "pHAGE-EGFR-E114K", "sequence-type": "addgene-full", "addgene_id": "116238", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116238.addgene-full.gb" }, @@ -51127,7 +64474,10 @@ "plasmid_name": "pLX303-ABI1-dCas9", "sequence-type": "addgene-full", "addgene_id": "154474", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-020-0966-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33020655" + ], "kit": null, "file": "data/addgene_plasmids/154474.addgene-full.gb" }, @@ -51136,7 +64486,10 @@ "plasmid_name": "pCG150_double_phiC31_attB", "sequence-type": "addgene-full", "addgene_id": "169693", - "references": [], + "references": [ + "https://doi.org/10.1093/genetics/iyab206", + "https://www.ncbi.nlm.nih.gov/pubmed/34791215" + ], "kit": null, "file": "data/addgene_plasmids/169693.addgene-full.gb" }, @@ -51145,7 +64498,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP10", "sequence-type": "addgene-full", "addgene_id": "158361", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158361.addgene-full.gb" }, @@ -51154,7 +64510,10 @@ "plasmid_name": "pEN_TT BirA*-3xFLAG-NUP37", "sequence-type": "addgene-full", "addgene_id": "192311", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192311.addgene-full.gb" }, @@ -51163,7 +64522,10 @@ "plasmid_name": "pDONR221_SLC22A14", "sequence-type": "addgene-full", "addgene_id": "131999", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131999.addgene-full.gb" }, @@ -51172,7 +64534,10 @@ "plasmid_name": "pENTR-ZmIAA16", "sequence-type": "addgene-full", "addgene_id": "188437", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188437.addgene-full.gb" }, @@ -51181,7 +64546,10 @@ "plasmid_name": "actc1b-mKate2-rab5aa", "sequence-type": "addgene-full", "addgene_id": "109648", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109648.addgene-full.gb" }, @@ -51190,7 +64558,10 @@ "plasmid_name": "pLenti CRISPR V2 sgShmt2_1", "sequence-type": "addgene-full", "addgene_id": "106314", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106314.addgene-full.gb" }, @@ -51199,7 +64570,10 @@ "plasmid_name": "pDONR223_NFE2L2_p.N160S", "sequence-type": "addgene-full", "addgene_id": "81558", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -51211,7 +64585,9 @@ "plasmid_name": "pMpGWB211", "sequence-type": "depositor-full", "addgene_id": "68602", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68602.depositor-full.gb" }, @@ -51220,7 +64596,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep97", "sequence-type": "addgene-full", "addgene_id": "136850", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136850.addgene-full.gb" }, @@ -51229,7 +64608,10 @@ "plasmid_name": "pDONR221_SLC52A2", "sequence-type": "addgene-full", "addgene_id": "131902", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131902.addgene-full.gb" }, @@ -51238,7 +64620,10 @@ "plasmid_name": "TFORF3367", "sequence-type": "addgene-full", "addgene_id": "144843", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144843.addgene-full.gb" }, @@ -51247,7 +64632,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp15", "sequence-type": "addgene-full", "addgene_id": "168825", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168825.addgene-full.gb" }, @@ -51256,7 +64644,6 @@ "plasmid_name": "pDEST-Spe4-RfA-mClover3-stop", "sequence-type": "addgene-full", "addgene_id": "186389", - "references": [], "kit": null, "file": "data/addgene_plasmids/186389.addgene-full.gb" }, @@ -51265,7 +64652,10 @@ "plasmid_name": "actc1b-mKate2-Pacsin2", "sequence-type": "addgene-full", "addgene_id": "109533", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109533.addgene-full.gb" }, @@ -51274,7 +64664,10 @@ "plasmid_name": "pDONR221-SLC5A11_STOP", "sequence-type": "depositor-full", "addgene_id": "161383", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161383.depositor-full.gb" }, @@ -51283,7 +64676,6 @@ "plasmid_name": "35S:YFPc-RabG3b-DN", "sequence-type": "addgene-full", "addgene_id": "102374", - "references": [], "kit": null, "file": "data/addgene_plasmids/102374.addgene-full.gb" }, @@ -51292,7 +64684,10 @@ "plasmid_name": "TFORF2941", "sequence-type": "addgene-full", "addgene_id": "144417", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144417.addgene-full.gb" }, @@ -51301,7 +64696,10 @@ "plasmid_name": "pCAG-Brainbow3.0", "sequence-type": "addgene-full", "addgene_id": "45176", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2450", + "https://www.ncbi.nlm.nih.gov/pubmed/23817127" + ], "kit": null, "file": "data/addgene_plasmids/45176.addgene-full.gb" }, @@ -51310,7 +64708,10 @@ "plasmid_name": "pDONR223_PEX3_p.G173E", "sequence-type": "addgene-full", "addgene_id": "81623", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -51322,7 +64723,10 @@ "plasmid_name": "pDONR221-SLC25A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161206", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161206.addgene-full.gb" }, @@ -51331,7 +64735,10 @@ "plasmid_name": "pNLF1W", "sequence-type": "addgene-full", "addgene_id": "136404", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/136404.addgene-full.gb" }, @@ -51340,7 +64747,9 @@ "plasmid_name": "p5E TRE-3GV (JDW 1163)", "sequence-type": "addgene-full", "addgene_id": "224476", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224476.addgene-full.gb" }, @@ -51349,7 +64758,10 @@ "plasmid_name": "pDEST53-LRRK2-WT", "sequence-type": "addgene-full", "addgene_id": "25044", - "references": [], + "references": [ + "https://doi.org/10.1016/j.nbd.2006.04.001", + "https://www.ncbi.nlm.nih.gov/pubmed/16750377" + ], "kit": null, "file": "data/addgene_plasmids/25044.addgene-full.gb" }, @@ -51358,7 +64770,10 @@ "plasmid_name": "Luc-Nanog-3'UTR", "sequence-type": "addgene-full", "addgene_id": "63893", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb2366", + "https://www.ncbi.nlm.nih.gov/pubmed/22020437" + ], "kit": null, "file": "data/addgene_plasmids/63893.addgene-full.gb" }, @@ -51367,7 +64782,10 @@ "plasmid_name": "pGCS2", "sequence-type": "addgene-full", "addgene_id": "85731", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -51379,7 +64797,10 @@ "plasmid_name": "pDONR P4-P1R-EYFP", "sequence-type": "depositor-full", "addgene_id": "48350", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -51391,7 +64812,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-PGK1", "sequence-type": "depositor-full", "addgene_id": "38071", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38071.depositor-full.gb" }, @@ -51400,7 +64824,9 @@ "plasmid_name": "pMpGWB101", "sequence-type": "depositor-full", "addgene_id": "68555", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68555.depositor-full.gb" }, @@ -51409,7 +64835,10 @@ "plasmid_name": "KB501: pMAGIC (L1-R5) hU6::SaCas9 gRNA scaffold; CMV promoter", "sequence-type": "addgene-full", "addgene_id": "121813", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121813.addgene-full.gb" }, @@ -51418,7 +64847,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_N", "sequence-type": "addgene-full", "addgene_id": "169401", - "references": [], "kit": null, "file": "data/addgene_plasmids/169401.addgene-full.gb" }, @@ -51427,7 +64855,6 @@ "plasmid_name": "pLV-EF1-Cre-PGK-Puro", "sequence-type": "addgene-full", "addgene_id": "108543", - "references": [], "kit": null, "file": "data/addgene_plasmids/108543.addgene-full.gb" }, @@ -51436,7 +64863,10 @@ "plasmid_name": "A1-LCD-2R-2K+3D", "sequence-type": "addgene-full", "addgene_id": "178680", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178680.addgene-full.gb" }, @@ -51445,7 +64875,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SMC3", "sequence-type": "addgene-full", "addgene_id": "222554", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222554.addgene-full.gb" }, @@ -51454,7 +64886,6 @@ "plasmid_name": "p667-UBC-TAOK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189888", - "references": [], "kit": null, "file": "data/addgene_plasmids/189888.addgene-full.gb" }, @@ -51463,7 +64894,10 @@ "plasmid_name": "TFORF3089", "sequence-type": "addgene-full", "addgene_id": "144565", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144565.addgene-full.gb" }, @@ -51472,7 +64906,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp8", "sequence-type": "addgene-full", "addgene_id": "168957", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168957.addgene-full.gb" }, @@ -51481,7 +64918,10 @@ "plasmid_name": "pHAGE- TRE-DEST-NBioTAP", "sequence-type": "depositor-full", "addgene_id": "53568", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1400648111", + "https://www.ncbi.nlm.nih.gov/pubmed/24550272" + ], "kit": null, "file": "data/addgene_plasmids/53568.depositor-full.gb" }, @@ -51490,7 +64930,9 @@ "plasmid_name": "pME-LexA-mODC (no LexOp) (JDW 937)", "sequence-type": "addgene-full", "addgene_id": "224504", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224504.addgene-full.gb" }, @@ -51499,7 +64941,10 @@ "plasmid_name": "pDONR221-SLC6A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161374", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161374.addgene-full.gb" }, @@ -51508,7 +64953,10 @@ "plasmid_name": "pDONR223_KRAS_WT", "sequence-type": "addgene-full", "addgene_id": "81751", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -51532,7 +64980,10 @@ "plasmid_name": "pLX304_CdTag-HA_EmptyVector", "sequence-type": "addgene-full", "addgene_id": "221466", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221466.addgene-full.gb" }, @@ -51541,7 +64992,10 @@ "plasmid_name": "pDONR221-MFSD11_STOP", "sequence-type": "addgene-full", "addgene_id": "161094", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161094.addgene-full.gb" }, @@ -51550,7 +65004,10 @@ "plasmid_name": "TFORF3455", "sequence-type": "addgene-full", "addgene_id": "144931", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144931.addgene-full.gb" }, @@ -51559,7 +65016,10 @@ "plasmid_name": "PRPF4", "sequence-type": "addgene-full", "addgene_id": "155850", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155850.addgene-full.gb" }, @@ -51568,7 +65028,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CAMK1G_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158168", - "references": [], "kit": null, "file": "data/addgene_plasmids/158168.addgene-full.gb" }, @@ -51577,7 +65036,10 @@ "plasmid_name": "pHAGE-BRAF-V600G", "sequence-type": "addgene-full", "addgene_id": "116205", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116205.addgene-full.gb" }, @@ -51586,7 +65048,10 @@ "plasmid_name": "pDONR221_MFSD6L", "sequence-type": "addgene-full", "addgene_id": "131870", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131870.addgene-full.gb" }, @@ -51595,7 +65060,10 @@ "plasmid_name": "TFORF3209", "sequence-type": "addgene-full", "addgene_id": "144685", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144685.addgene-full.gb" }, @@ -51604,7 +65072,10 @@ "plasmid_name": "5'-3xFLAG Mta1+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212070", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212070.addgene-full.gb" }, @@ -51613,7 +65084,10 @@ "plasmid_name": "pDONR223_PTEN_p.G129V", "sequence-type": "addgene-full", "addgene_id": "81685", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -51625,7 +65099,6 @@ "plasmid_name": "Hs.KRAS4b K147Q", "sequence-type": "depositor-full", "addgene_id": "83155", - "references": [], "kit": null, "file": "data/addgene_plasmids/83155.depositor-full.gb" }, @@ -51634,7 +65107,10 @@ "plasmid_name": "actc1b-mKate2-rab11al", "sequence-type": "addgene-full", "addgene_id": "109595", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109595.addgene-full.gb" }, @@ -51643,7 +65119,10 @@ "plasmid_name": "pENTR-TC9", "sequence-type": "addgene-full", "addgene_id": "202088", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00319", + "https://www.ncbi.nlm.nih.gov/pubmed/38049144" + ], "kit": null, "file": "data/addgene_plasmids/202088.addgene-full.gb" }, @@ -51652,7 +65131,10 @@ "plasmid_name": "pDONR221-ZNF730", "sequence-type": "depositor-full", "addgene_id": "101465", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101465.depositor-full.gb" }, @@ -51661,7 +65143,10 @@ "plasmid_name": "R619-M87-303: CMV51p> SARS-CoV S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166012", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/166012.addgene-full.gb" }, @@ -51670,7 +65155,10 @@ "plasmid_name": "TFORF3275", "sequence-type": "addgene-full", "addgene_id": "144751", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144751.addgene-full.gb" }, @@ -51679,7 +65167,10 @@ "plasmid_name": "p3E-rab1ba", "sequence-type": "addgene-full", "addgene_id": "109675", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109675.addgene-full.gb" }, @@ -51688,7 +65179,10 @@ "plasmid_name": "LIIIalpha F E-F", "sequence-type": "depositor-full", "addgene_id": "54386", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54386.depositor-full.gb" }, @@ -51697,7 +65191,10 @@ "plasmid_name": "pDONR223_KIF2B_p.Q430H", "sequence-type": "addgene-full", "addgene_id": "81565", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -51709,7 +65206,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_C4341S", "sequence-type": "addgene-full", "addgene_id": "187156", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187156.addgene-full.gb" }, @@ -51718,7 +65218,10 @@ "plasmid_name": "pDONR223_SERPINB5_WT", "sequence-type": "addgene-full", "addgene_id": "82898", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82898.addgene-full.gb" }, @@ -51727,7 +65230,10 @@ "plasmid_name": "pDONR221-SLC1A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161140", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161140.addgene-full.gb" }, @@ -51736,7 +65242,6 @@ "plasmid_name": "R777-E148 Hs.PAK1-nostop", "sequence-type": "depositor-full", "addgene_id": "70432", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -51748,7 +65253,10 @@ "plasmid_name": "pAG413GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14381", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -51760,7 +65268,10 @@ "plasmid_name": "pMuLE ENTR SV40 PuroR L5-L2", "sequence-type": "depositor-full", "addgene_id": "62165", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62165.depositor-full.gb" }, @@ -51769,7 +65280,10 @@ "plasmid_name": "pDONR223_RB1_p.A772S", "sequence-type": "addgene-full", "addgene_id": "82803", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82803.addgene-full.gb" }, @@ -51778,7 +65292,6 @@ "plasmid_name": "pENTR_AtU6p_BsaI_ccdb_gRNA", "sequence-type": "addgene-full", "addgene_id": "225986", - "references": [], "kit": null, "file": "data/addgene_plasmids/225986.addgene-full.gb" }, @@ -51787,7 +65300,6 @@ "plasmid_name": "pENTRY4_ Dja6_2", "sequence-type": "addgene-full", "addgene_id": "126895", - "references": [], "kit": null, "file": "data/addgene_plasmids/126895.addgene-full.gb" }, @@ -51796,7 +65308,10 @@ "plasmid_name": "pDRAV-4", "sequence-type": "depositor-full", "addgene_id": "26749", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1521", + "https://www.ncbi.nlm.nih.gov/pubmed/20953177" + ], "kit": null, "file": "data/addgene_plasmids/26749.depositor-full.gb" }, @@ -51805,7 +65320,10 @@ "plasmid_name": "RBM10_pLX307", "sequence-type": "addgene-full", "addgene_id": "98371", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98371.addgene-full.gb" }, @@ -51814,7 +65332,10 @@ "plasmid_name": "pDONR221 CARD8 PAM F405G", "sequence-type": "addgene-full", "addgene_id": "169981", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169981.addgene-full.gb" }, @@ -51823,7 +65344,10 @@ "plasmid_name": "pYPQ292 (AaCas12b)-D570A-TV", "sequence-type": "addgene-full", "addgene_id": "136380", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136380.addgene-full.gb" }, @@ -51844,7 +65368,10 @@ "plasmid_name": "pDN0603 (pDEST, NatR)", "sequence-type": "addgene-full", "addgene_id": "210482", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210482.addgene-full.gb" }, @@ -51853,7 +65380,10 @@ "plasmid_name": "pHAGE-ARAF", "sequence-type": "addgene-full", "addgene_id": "116713", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116713.addgene-full.gb" }, @@ -51862,7 +65392,10 @@ "plasmid_name": "pCDNA5_C12orf49-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "155112", - "references": [], + "references": [ + "https://doi.org/10.1038/s42255-020-0211-z", + "https://www.ncbi.nlm.nih.gov/pubmed/32694731" + ], "kit": null, "file": "data/addgene_plasmids/155112.addgene-full.gb" }, @@ -51871,7 +65404,6 @@ "plasmid_name": "pcDNA-Pom121 mApple", "sequence-type": "addgene-full", "addgene_id": "187674", - "references": [], "kit": null, "file": "data/addgene_plasmids/187674.addgene-full.gb" }, @@ -51880,7 +65412,10 @@ "plasmid_name": "pBABE-puro-Halo-hMRE11(H129N)", "sequence-type": "addgene-full", "addgene_id": "208394", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06889-6", + "https://www.ncbi.nlm.nih.gov/pubmed/38200309" + ], "kit": null, "file": "data/addgene_plasmids/208394.addgene-full.gb" }, @@ -51889,7 +65424,10 @@ "plasmid_name": "tetO-SOX9", "sequence-type": "addgene-full", "addgene_id": "170703", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170703.addgene-full.gb" }, @@ -51898,7 +65436,6 @@ "plasmid_name": "IDG_SCNN1B_OE_1", "sequence-type": "addgene-full", "addgene_id": "161662", - "references": [], "kit": null, "file": "data/addgene_plasmids/161662.addgene-full.gb" }, @@ -51907,7 +65444,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) CRIP2", "sequence-type": "addgene-full", "addgene_id": "107509", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107509.addgene-full.gb" }, @@ -51916,7 +65456,6 @@ "plasmid_name": "pcDNA-DEST47-Noa1-GFP", "sequence-type": "addgene-full", "addgene_id": "191968", - "references": [], "kit": null, "file": "data/addgene_plasmids/191968.addgene-full.gb" }, @@ -51925,7 +65464,10 @@ "plasmid_name": "pHAGE-PIK3CA-E109_I112delinsD", "sequence-type": "addgene-full", "addgene_id": "116468", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116468.addgene-full.gb" }, @@ -51934,7 +65476,10 @@ "plasmid_name": "SMG6", "sequence-type": "addgene-full", "addgene_id": "156020", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156020.addgene-full.gb" }, @@ -51943,7 +65488,10 @@ "plasmid_name": "pDONR221_SLC22A24", "sequence-type": "addgene-full", "addgene_id": "132000", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132000.addgene-full.gb" }, @@ -51952,7 +65500,10 @@ "plasmid_name": "pCPP5108", "sequence-type": "addgene-full", "addgene_id": "128726", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128726.addgene-full.gb" }, @@ -51961,7 +65512,10 @@ "plasmid_name": "Arp3-pmCherryC1", "sequence-type": "addgene-full", "addgene_id": "27682", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.1000604", + "https://www.ncbi.nlm.nih.gov/pubmed/21445324" + ], "kit": null, "file": "data/addgene_plasmids/27682.addgene-full.gb" }, @@ -51970,7 +65524,10 @@ "plasmid_name": "pDONR221_SLC9A3", "sequence-type": "addgene-full", "addgene_id": "132234", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132234.addgene-full.gb" }, @@ -51979,7 +65536,10 @@ "plasmid_name": "pJRA109", "sequence-type": "addgene-full", "addgene_id": "209342", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209342.addgene-full.gb" }, @@ -51988,7 +65548,10 @@ "plasmid_name": "pDONR223_B2M_p.C100S", "sequence-type": "addgene-full", "addgene_id": "81308", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -52000,7 +65563,9 @@ "plasmid_name": "pMpGWB336", "sequence-type": "depositor-full", "addgene_id": "68664", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68664.depositor-full.gb" }, @@ -52009,7 +65574,10 @@ "plasmid_name": "LR (hsp70I: cPLA2-mK2)", "sequence-type": "addgene-full", "addgene_id": "162564", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.04.016", + "https://www.ncbi.nlm.nih.gov/pubmed/27203112" + ], "kit": null, "file": "data/addgene_plasmids/162564.addgene-full.gb" }, @@ -52018,7 +65586,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS3", "sequence-type": "addgene-full", "addgene_id": "145345", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145345.addgene-full.gb" }, @@ -52027,7 +65598,10 @@ "plasmid_name": "C413-E45: attB4-hr5-ie1p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162930", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -52039,7 +65613,10 @@ "plasmid_name": "pPB-cT3G-cERP2-NR5A1", "sequence-type": "addgene-full", "addgene_id": "192915", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192915.addgene-full.gb" }, @@ -52048,7 +65625,10 @@ "plasmid_name": "pMXs-Gfi1", "sequence-type": "addgene-full", "addgene_id": "158531", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.55249", + "https://www.ncbi.nlm.nih.gov/pubmed/32602462" + ], "kit": null, "file": "data/addgene_plasmids/158531.addgene-full.gb" }, @@ -52057,7 +65637,10 @@ "plasmid_name": "pINDUCER-21-HOXA5", "sequence-type": "addgene-full", "addgene_id": "97040", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "file": "data/addgene_plasmids/97040.addgene-full.gb" }, @@ -52066,7 +65649,10 @@ "plasmid_name": "pDONR221-LETM1_STOP", "sequence-type": "addgene-full", "addgene_id": "161456", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161456.addgene-full.gb" }, @@ -52075,7 +65661,10 @@ "plasmid_name": "pENTR223-BBLF1", "sequence-type": "addgene-full", "addgene_id": "195768", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195768.addgene-full.gb" }, @@ -52084,7 +65673,10 @@ "plasmid_name": "p5Etmem88aE1", "sequence-type": "addgene-full", "addgene_id": "90112", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90112.addgene-full.gb" }, @@ -52093,7 +65685,10 @@ "plasmid_name": "pDONR223_MAGEC2_p.G74V", "sequence-type": "addgene-full", "addgene_id": "81393", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -52105,7 +65700,10 @@ "plasmid_name": "pDD104 (Peft-3::Cre)", "sequence-type": "depositor-full", "addgene_id": "47551", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2641", + "https://www.ncbi.nlm.nih.gov/pubmed/23995389" + ], "kit": null, "file": "data/addgene_plasmids/47551.depositor-full.gb" }, @@ -52114,7 +65712,10 @@ "plasmid_name": "pCFJ2443 - [1-2] ENTR - Fluor - ce-mMaple3(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159867", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159867.addgene-full.gb" }, @@ -52123,7 +65724,10 @@ "plasmid_name": "pHAGE-PIK3CA-Q546K", "sequence-type": "addgene-full", "addgene_id": "116527", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116527.addgene-full.gb" }, @@ -52132,7 +65736,10 @@ "plasmid_name": "pENTR-TARDBP-G368A", "sequence-type": "addgene-full", "addgene_id": "141325", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "file": "data/addgene_plasmids/141325.addgene-full.gb" }, @@ -52141,7 +65748,10 @@ "plasmid_name": "pDONR221-MFSD13A_STOP", "sequence-type": "depositor-full", "addgene_id": "161118", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161118.depositor-full.gb" }, @@ -52150,7 +65760,9 @@ "plasmid_name": "p3E-CMVmin:nlsGFP pA", "sequence-type": "depositor-full", "addgene_id": "80821", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80821.depositor-full.gb" }, @@ -52159,7 +65771,6 @@ "plasmid_name": "pDONR221-CTSB", "sequence-type": "addgene-full", "addgene_id": "158443", - "references": [], "kit": null, "file": "data/addgene_plasmids/158443.addgene-full.gb" }, @@ -52168,7 +65779,10 @@ "plasmid_name": "pENTR-HLA-A2_GFP", "sequence-type": "addgene-full", "addgene_id": "85161", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201343671", + "https://www.ncbi.nlm.nih.gov/pubmed/24293164" + ], "kit": null, "file": "data/addgene_plasmids/85161.addgene-full.gb" }, @@ -52177,7 +65791,10 @@ "plasmid_name": "pTW085", "sequence-type": "addgene-full", "addgene_id": "115933", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115933.addgene-full.gb" }, @@ -52186,7 +65803,6 @@ "plasmid_name": "pMx/ATP9A-HA", "sequence-type": "addgene-full", "addgene_id": "209230", - "references": [], "kit": null, "file": "data/addgene_plasmids/209230.addgene-full.gb" }, @@ -52195,7 +65811,10 @@ "plasmid_name": "372 pTol2-fli1ep:EGFPDest", "sequence-type": "depositor-full", "addgene_id": "73491", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/73491.depositor-full.gb" }, @@ -52204,7 +65823,9 @@ "plasmid_name": "pDEST mfap4:tdTomato", "sequence-type": "addgene-full", "addgene_id": "135214", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "file": "data/addgene_plasmids/135214.addgene-full.gb" }, @@ -52213,7 +65834,10 @@ "plasmid_name": "pRU295", "sequence-type": "addgene-full", "addgene_id": "167694", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167694.addgene-full.gb" }, @@ -52222,7 +65846,6 @@ "plasmid_name": "R777-E096 Hs.FNTB-nostop", "sequence-type": "depositor-full", "addgene_id": "70380", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -52234,7 +65857,10 @@ "plasmid_name": "pGM34DEST", "sequence-type": "depositor-full", "addgene_id": "74756", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301705", + "https://www.ncbi.nlm.nih.gov/pubmed/30504365" + ], "kit": null, "file": "data/addgene_plasmids/74756.depositor-full.gb" }, @@ -52243,7 +65869,10 @@ "plasmid_name": "pLX304-BCL-XL-499/500R", "sequence-type": "addgene-full", "addgene_id": "203575", - "references": [], + "references": [ + "https://doi.org/10.1158/1078-0432.CCR-22-0669", + "https://www.ncbi.nlm.nih.gov/pubmed/35776130" + ], "kit": null, "file": "data/addgene_plasmids/203575.addgene-full.gb" }, @@ -52252,7 +65881,10 @@ "plasmid_name": "pDONR221 NLRP1 P1214R", "sequence-type": "addgene-full", "addgene_id": "166822", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166822.addgene-full.gb" }, @@ -52261,7 +65893,10 @@ "plasmid_name": "pDR-GW AT1.03", "sequence-type": "addgene-full", "addgene_id": "28003", - "references": [], + "references": [ + "https://doi.org/10.1042/BJ20100946", + "https://www.ncbi.nlm.nih.gov/pubmed/20854260" + ], "kit": null, "file": "data/addgene_plasmids/28003.addgene-full.gb" }, @@ -52270,7 +65905,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP3", "sequence-type": "addgene-full", "addgene_id": "141257", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141257.addgene-full.gb" }, @@ -52279,7 +65917,10 @@ "plasmid_name": "pAG425GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14154", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -52291,7 +65932,10 @@ "plasmid_name": "pHAGE-PDGFRB-T369M", "sequence-type": "addgene-full", "addgene_id": "116455", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116455.addgene-full.gb" }, @@ -52300,7 +65944,6 @@ "plasmid_name": "pDONR221-RBM11", "sequence-type": "addgene-full", "addgene_id": "192748", - "references": [], "kit": null, "file": "data/addgene_plasmids/192748.addgene-full.gb" }, @@ -52309,7 +65952,10 @@ "plasmid_name": "pMXs-ms-Sox1", "sequence-type": "depositor-full", "addgene_id": "50778", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "file": "data/addgene_plasmids/50778.depositor-full.gb" }, @@ -52318,7 +65964,10 @@ "plasmid_name": "pYPQ290-D570A-SRDX", "sequence-type": "addgene-full", "addgene_id": "129682", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129682.addgene-full.gb" }, @@ -52327,7 +65976,10 @@ "plasmid_name": "R989-X09-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) G12D", "sequence-type": "addgene-full", "addgene_id": "159541", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159541.addgene-full.gb" }, @@ -52336,7 +65988,10 @@ "plasmid_name": "pBullet-cg-n", "sequence-type": "depositor-full", "addgene_id": "53069", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53069.depositor-full.gb" }, @@ -52345,7 +66000,9 @@ "plasmid_name": "pLenti Lifeact-EGFP BlastR", "sequence-type": "addgene-full", "addgene_id": "84383", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "file": "data/addgene_plasmids/84383.addgene-full.gb" }, @@ -52354,7 +66011,10 @@ "plasmid_name": "pYPQ262B-ABE8e", "sequence-type": "addgene-full", "addgene_id": "161524", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-00827-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33398158" + ], "kit": null, "file": "data/addgene_plasmids/161524.addgene-full.gb" }, @@ -52363,7 +66023,10 @@ "plasmid_name": "pLenti-BLRR", "sequence-type": "addgene-full", "addgene_id": "158958", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkaa669", + "https://www.ncbi.nlm.nih.gov/pubmed/32797168" + ], "kit": null, "file": "data/addgene_plasmids/158958.addgene-full.gb" }, @@ -52372,7 +66035,10 @@ "plasmid_name": "pHAGE-PIK3CG-R130Q", "sequence-type": "addgene-full", "addgene_id": "116581", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116581.addgene-full.gb" }, @@ -52381,7 +66047,10 @@ "plasmid_name": "pDONR221_SLC7A6", "sequence-type": "addgene-full", "addgene_id": "132209", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132209.addgene-full.gb" }, @@ -52390,7 +66059,10 @@ "plasmid_name": "pGWT35S-TIM21(1\u201350)-Citrine", "sequence-type": "addgene-full", "addgene_id": "182584", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "file": "data/addgene_plasmids/182584.addgene-full.gb" }, @@ -52399,7 +66071,6 @@ "plasmid_name": "R777-E170 Hs.PIK3CG-nostop", "sequence-type": "depositor-full", "addgene_id": "70454", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -52411,7 +66082,9 @@ "plasmid_name": "pRRLNeo-pEF1a-p53ash-mKate2-splitmVenusN", "sequence-type": "depositor-full", "addgene_id": "69582", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "file": "data/addgene_plasmids/69582.depositor-full.gb" }, @@ -52420,7 +66093,10 @@ "plasmid_name": "pMuLE ENTR H1 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62103", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62103.depositor-full.gb" }, @@ -52429,7 +66105,10 @@ "plasmid_name": "pDONR223_OR2G6_p.I177F", "sequence-type": "addgene-full", "addgene_id": "81335", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -52441,7 +66120,10 @@ "plasmid_name": "pKI-cjPLP1e2-P15L-_lox", "sequence-type": "addgene-full", "addgene_id": "129756", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-018-37990-w", + "https://www.ncbi.nlm.nih.gov/pubmed/30728412" + ], "kit": null, "file": "data/addgene_plasmids/129756.addgene-full.gb" }, @@ -52450,7 +66132,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CSNK1A1L_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170591", - "references": [], "kit": null, "file": "data/addgene_plasmids/170591.addgene-full.gb" }, @@ -52459,7 +66140,10 @@ "plasmid_name": "pCMB-TLEr", "sequence-type": "depositor-full", "addgene_id": "61188", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61188.depositor-full.gb" }, @@ -52468,7 +66152,10 @@ "plasmid_name": "pHAGE-RAF1-V537I", "sequence-type": "addgene-full", "addgene_id": "116661", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116661.addgene-full.gb" }, @@ -52477,7 +66164,10 @@ "plasmid_name": "pPB-cT3G-cERP2-RUNX1", "sequence-type": "addgene-full", "addgene_id": "192928", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192928.addgene-full.gb" }, @@ -52486,7 +66176,10 @@ "plasmid_name": "pDONR223 GABARAPL2 G116", "sequence-type": "addgene-full", "addgene_id": "123088", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123088.addgene-full.gb" }, @@ -52495,7 +66188,10 @@ "plasmid_name": "pENTR-R2-WPRE-pA-L4", "sequence-type": "addgene-full", "addgene_id": "141063", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141063.addgene-full.gb" }, @@ -52504,7 +66200,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(L301R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128654", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128654.addgene-full.gb" }, @@ -52513,7 +66212,10 @@ "plasmid_name": "pDONR221_SLC6A4", "sequence-type": "addgene-full", "addgene_id": "132172", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132172.addgene-full.gb" }, @@ -52522,7 +66224,10 @@ "plasmid_name": "ZNF9", "sequence-type": "addgene-full", "addgene_id": "156152", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156152.addgene-full.gb" }, @@ -52531,7 +66236,10 @@ "plasmid_name": "pDONR223_ELK1_WT", "sequence-type": "addgene-full", "addgene_id": "82207", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82207.addgene-full.gb" }, @@ -52540,7 +66248,10 @@ "plasmid_name": "pAAV_MLP-BC1405-luc2", "sequence-type": "addgene-full", "addgene_id": "214670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214670.addgene-full.gb" }, @@ -52549,7 +66260,10 @@ "plasmid_name": "Flag-HA-USP18", "sequence-type": "addgene-full", "addgene_id": "22572", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22572.addgene-full.gb" }, @@ -52558,7 +66272,6 @@ "plasmid_name": "Hs.KRAS4b G13D", "sequence-type": "depositor-full", "addgene_id": "83133", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -52570,7 +66283,10 @@ "plasmid_name": "pENTR1A mKate2-hu_ncOGT WT", "sequence-type": "addgene-full", "addgene_id": "154282", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154282.addgene-full.gb" }, @@ -52579,7 +66295,10 @@ "plasmid_name": "HMGN1_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176995", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176995.addgene-full.gb" }, @@ -52588,7 +66307,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP12", "sequence-type": "addgene-full", "addgene_id": "169385", - "references": [], "kit": null, "file": "data/addgene_plasmids/169385.addgene-full.gb" }, @@ -52597,7 +66315,10 @@ "plasmid_name": "pME-QF", "sequence-type": "depositor-full", "addgene_id": "61375", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2013.06.012", + "https://www.ncbi.nlm.nih.gov/pubmed/23792917" + ], "kit": null, "file": "data/addgene_plasmids/61375.depositor-full.gb" }, @@ -52606,7 +66327,10 @@ "plasmid_name": "pDONR221-SFXN5", "sequence-type": "addgene-full", "addgene_id": "132292", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132292.addgene-full.gb" }, @@ -52615,7 +66339,10 @@ "plasmid_name": "pENTR223-PARK7C53A", "sequence-type": "addgene-full", "addgene_id": "115179", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115179.addgene-full.gb" }, @@ -52624,7 +66351,10 @@ "plasmid_name": "pHAGE-ERBB2-G222C", "sequence-type": "addgene-full", "addgene_id": "116330", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116330.addgene-full.gb" }, @@ -52633,7 +66363,10 @@ "plasmid_name": "MiniCoopR U6:gRNA p53, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118841", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118841.addgene-full.gb" }, @@ -52642,7 +66375,10 @@ "plasmid_name": "TFORF3328", "sequence-type": "addgene-full", "addgene_id": "144804", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144804.addgene-full.gb" }, @@ -52651,7 +66387,10 @@ "plasmid_name": "p3E-rab34b", "sequence-type": "addgene-full", "addgene_id": "109694", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109694.addgene-full.gb" }, @@ -52660,7 +66399,10 @@ "plasmid_name": "pcDNA3.2/NS1", "sequence-type": "addgene-full", "addgene_id": "120824", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120824.addgene-full.gb" }, @@ -52669,7 +66411,6 @@ "plasmid_name": "R777-E276 Hs.RHEB-nostop", "sequence-type": "depositor-full", "addgene_id": "70560", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -52681,7 +66422,10 @@ "plasmid_name": "pDONR221_SLC13A5", "sequence-type": "addgene-full", "addgene_id": "131945", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131945.addgene-full.gb" }, @@ -52690,7 +66434,10 @@ "plasmid_name": "pDONR223_CTCF_p.R377C", "sequence-type": "addgene-full", "addgene_id": "81584", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -52702,7 +66449,10 @@ "plasmid_name": "pEBTet-SNAP-Cep57", "sequence-type": "addgene-full", "addgene_id": "136817", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136817.addgene-full.gb" }, @@ -52711,7 +66461,10 @@ "plasmid_name": "pDONR223_CGREF1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82879", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82879.addgene-full.gb" }, @@ -52720,7 +66473,10 @@ "plasmid_name": "5'-BirA-FLAG Chtop+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212091", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212091.addgene-full.gb" }, @@ -52729,7 +66485,10 @@ "plasmid_name": "pLXI_TRC401 SMARCB1 var 2", "sequence-type": "addgene-full", "addgene_id": "111182", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.44161", + "https://www.ncbi.nlm.nih.gov/pubmed/30860482" + ], "kit": null, "file": "data/addgene_plasmids/111182.addgene-full.gb" }, @@ -52738,7 +66497,10 @@ "plasmid_name": "pWPI-TFDP2", "sequence-type": "addgene-full", "addgene_id": "114300", - "references": [], + "references": [ + "https://doi.org/10.4161/cc.25834", + "https://www.ncbi.nlm.nih.gov/pubmed/23907129" + ], "kit": null, "file": "data/addgene_plasmids/114300.addgene-full.gb" }, @@ -52747,7 +66509,10 @@ "plasmid_name": "pDONR223_NRAS_p.G12A", "sequence-type": "addgene-full", "addgene_id": "81664", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -52759,7 +66524,10 @@ "plasmid_name": "p3E-Dnm2b-DN", "sequence-type": "addgene-full", "addgene_id": "109574", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109574.addgene-full.gb" }, @@ -52768,7 +66536,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp13", "sequence-type": "addgene-full", "addgene_id": "168862", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168862.addgene-full.gb" }, @@ -52777,7 +66548,10 @@ "plasmid_name": "pENT-L1-Kozak-EGFP-GPI-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186355", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186355.addgene-full.gb" }, @@ -52786,7 +66560,10 @@ "plasmid_name": "pME-mTagBFP-CAAX", "sequence-type": "depositor-full", "addgene_id": "75149", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -52798,7 +66575,10 @@ "plasmid_name": "pT7gRNA-ccdb", "sequence-type": "addgene-full", "addgene_id": "140864", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/140864.addgene-full.gb" }, @@ -52807,7 +66587,10 @@ "plasmid_name": "pEN_TT 3xFLAG ID2", "sequence-type": "addgene-full", "addgene_id": "98390", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98390.addgene-full.gb" }, @@ -52816,7 +66599,10 @@ "plasmid_name": "pDONR221-MICU1-mEF", "sequence-type": "depositor-full", "addgene_id": "31765", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09358", + "https://www.ncbi.nlm.nih.gov/pubmed/20693986" + ], "kit": null, "file": "data/addgene_plasmids/31765.depositor-full.gb" }, @@ -52825,7 +66611,10 @@ "plasmid_name": "P1_Firre_1.49_pDONR221", "sequence-type": "addgene-full", "addgene_id": "195204", - "references": [], + "references": [ + "https://doi.org/10.1038/nsmb.2764", + "https://www.ncbi.nlm.nih.gov/pubmed/24463464" + ], "kit": null, "file": "data/addgene_plasmids/195204.addgene-full.gb" }, @@ -52834,7 +66623,10 @@ "plasmid_name": "pDONR223_TP53_p.P278H", "sequence-type": "addgene-full", "addgene_id": "82756", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82756.addgene-full.gb" }, @@ -52843,7 +66635,10 @@ "plasmid_name": "IG301: pMVP (L1-R5) CMV promoter", "sequence-type": "addgene-full", "addgene_id": "121692", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121692.addgene-full.gb" }, @@ -52852,7 +66647,10 @@ "plasmid_name": "SUN2delSUNec", "sequence-type": "addgene-full", "addgene_id": "130847", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130847.addgene-full.gb" }, @@ -52861,7 +66659,10 @@ "plasmid_name": "JDW 742 (pDONR221-EGFP-KRAS4B-G12V)", "sequence-type": "addgene-full", "addgene_id": "156403", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156403.addgene-full.gb" }, @@ -52870,7 +66671,10 @@ "plasmid_name": "pDEST_6xUAS:Lamp1-mGFP", "sequence-type": "addgene-full", "addgene_id": "192356", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.82094", + "https://www.ncbi.nlm.nih.gov/pubmed/36398880" + ], "kit": null, "file": "data/addgene_plasmids/192356.addgene-full.gb" }, @@ -52879,7 +66683,10 @@ "plasmid_name": "pEntry_MERS-CoV-NS3", "sequence-type": "depositor-full", "addgene_id": "168827", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168827.depositor-full.gb" }, @@ -52888,7 +66695,10 @@ "plasmid_name": "A1-LCD-9F+6Y", "sequence-type": "addgene-full", "addgene_id": "178661", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178661.addgene-full.gb" }, @@ -52897,7 +66707,10 @@ "plasmid_name": "pCBL101gw", "sequence-type": "addgene-full", "addgene_id": "199725", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad231", + "https://www.ncbi.nlm.nih.gov/pubmed/37070560" + ], "kit": null, "file": "data/addgene_plasmids/199725.addgene-full.gb" }, @@ -52906,7 +66719,10 @@ "plasmid_name": "pwP", "sequence-type": "depositor-full", "addgene_id": "22519", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "file": "data/addgene_plasmids/22519.depositor-full.gb" }, @@ -52915,7 +66731,10 @@ "plasmid_name": "pCellFree_G03", "sequence-type": "depositor-full", "addgene_id": "67137", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "file": "data/addgene_plasmids/67137.depositor-full.gb" }, @@ -52924,7 +66743,6 @@ "plasmid_name": "R777-E293 Hs.RPS6KA3", "sequence-type": "addgene-full", "addgene_id": "70577", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -52936,7 +66754,10 @@ "plasmid_name": "HB901: pMVP (L3-L2) polyA", "sequence-type": "addgene-full", "addgene_id": "121746", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121746.addgene-full.gb" }, @@ -52945,7 +66766,10 @@ "plasmid_name": "pDONR223_CFLAR_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82936", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82936.addgene-full.gb" }, @@ -52954,7 +66778,10 @@ "plasmid_name": "pDONR223_IDH2_p.T331M", "sequence-type": "addgene-full", "addgene_id": "81450", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -52966,7 +66793,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_DelNTerm_160-371AA", "sequence-type": "addgene-full", "addgene_id": "221487", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221487.addgene-full.gb" }, @@ -52975,7 +66805,10 @@ "plasmid_name": "pGLTR-X-PURO", "sequence-type": "depositor-full", "addgene_id": "58246", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "file": "data/addgene_plasmids/58246.depositor-full.gb" }, @@ -52984,7 +66817,9 @@ "plasmid_name": "nTALECD for_MSH1 exon5_1397NC", "sequence-type": "addgene-full", "addgene_id": "193380", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "file": "data/addgene_plasmids/193380.addgene-full.gb" }, @@ -52993,7 +66828,10 @@ "plasmid_name": "pDONR221-SLC13A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161075", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161075.addgene-full.gb" }, @@ -53002,7 +66840,10 @@ "plasmid_name": "KX002: pMVP/PB-DEST", "sequence-type": "addgene-full", "addgene_id": "121869", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121869.addgene-full.gb" }, @@ -53011,7 +66852,6 @@ "plasmid_name": "p667-UBC-BCKDK-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158189", - "references": [], "kit": null, "file": "data/addgene_plasmids/158189.addgene-full.gb" }, @@ -53020,7 +66860,10 @@ "plasmid_name": "plenti-UBC- IKZF5-3xHA-pGK-PUR", "sequence-type": "addgene-full", "addgene_id": "107385", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107385.addgene-full.gb" }, @@ -53029,7 +66872,10 @@ "plasmid_name": "TFORF3188", "sequence-type": "addgene-full", "addgene_id": "144664", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144664.addgene-full.gb" }, @@ -53038,7 +66884,10 @@ "plasmid_name": "374 pME-ets1a", "sequence-type": "depositor-full", "addgene_id": "49000", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49000.depositor-full.gb" }, @@ -53047,7 +66896,10 @@ "plasmid_name": "pENTR-PIP-FUCCI", "sequence-type": "addgene-full", "addgene_id": "118621", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "file": "data/addgene_plasmids/118621.addgene-full.gb" }, @@ -53056,7 +66908,10 @@ "plasmid_name": "pDONR221_SLC6A2", "sequence-type": "addgene-full", "addgene_id": "131891", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-021-91700-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34112854" + ], "kit": null, "file": "data/addgene_plasmids/131891.addgene-full.gb" }, @@ -53065,7 +66920,10 @@ "plasmid_name": "pENTR IRES L5-L4", "sequence-type": "depositor-full", "addgene_id": "43964", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "file": "data/addgene_plasmids/43964.depositor-full.gb" }, @@ -53074,7 +66932,10 @@ "plasmid_name": "TFORF3108", "sequence-type": "addgene-full", "addgene_id": "144584", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144584.addgene-full.gb" }, @@ -53083,7 +66944,10 @@ "plasmid_name": "pMOS008: GCaMP6F calcium sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163045", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163045.addgene-full.gb" }, @@ -53092,7 +66956,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP5_nostop", "sequence-type": "addgene-full", "addgene_id": "149308", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149308.addgene-full.gb" }, @@ -53101,7 +66968,10 @@ "plasmid_name": "pHAGE-AKT1-R121W", "sequence-type": "addgene-full", "addgene_id": "116104", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116104.addgene-full.gb" }, @@ -53110,7 +66980,10 @@ "plasmid_name": "pDONR221-SLC5A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161395", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161395.addgene-full.gb" }, @@ -53119,7 +66992,10 @@ "plasmid_name": "pLX304-PCDH7-b", "sequence-type": "addgene-full", "addgene_id": "108539", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-1267-T", + "https://www.ncbi.nlm.nih.gov/pubmed/27821484" + ], "kit": null, "file": "data/addgene_plasmids/108539.addgene-full.gb" }, @@ -53128,7 +67004,10 @@ "plasmid_name": "pDONR223_LNX1_WT", "sequence-type": "addgene-full", "addgene_id": "81804", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -53140,7 +67019,10 @@ "plasmid_name": "pAAV2-SYN-GFP-BGHpA", "sequence-type": "addgene-full", "addgene_id": "190229", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190229.addgene-full.gb" }, @@ -53149,7 +67031,10 @@ "plasmid_name": "pcDNA3.2/NS2B", "sequence-type": "addgene-full", "addgene_id": "120819", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120819.addgene-full.gb" }, @@ -53158,7 +67043,10 @@ "plasmid_name": "pLOVE empty vector", "sequence-type": "depositor-full", "addgene_id": "15948", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2007.08.008", + "https://www.ncbi.nlm.nih.gov/pubmed/18371358" + ], "kit": null, "file": "data/addgene_plasmids/15948.depositor-full.gb" }, @@ -53167,7 +67055,10 @@ "plasmid_name": "pDONR221_SLC24A3", "sequence-type": "addgene-full", "addgene_id": "131978", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131978.addgene-full.gb" }, @@ -53176,7 +67067,10 @@ "plasmid_name": "pENTR4-V5-2 (w234-1)", "sequence-type": "depositor-full", "addgene_id": "17426", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17426.depositor-full.gb" }, @@ -53185,7 +67079,10 @@ "plasmid_name": "p3E-2a-tdTomato", "sequence-type": "depositor-full", "addgene_id": "67707", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "file": "data/addgene_plasmids/67707.depositor-full.gb" }, @@ -53194,7 +67091,10 @@ "plasmid_name": "TFORF3363", "sequence-type": "addgene-full", "addgene_id": "144839", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144839.addgene-full.gb" }, @@ -53203,7 +67103,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.E453Q", "sequence-type": "addgene-full", "addgene_id": "82844", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82844.addgene-full.gb" }, @@ -53212,7 +67115,6 @@ "plasmid_name": "R777-E200 Hs.PRKAG1-nostop", "sequence-type": "depositor-full", "addgene_id": "70484", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -53224,7 +67126,10 @@ "plasmid_name": "p3E-mCherry", "sequence-type": "addgene-full", "addgene_id": "108884", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "file": "data/addgene_plasmids/108884.addgene-full.gb" }, @@ -53233,7 +67138,10 @@ "plasmid_name": "pAG415GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14337", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -53245,7 +67153,10 @@ "plasmid_name": "GCH1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98336", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98336.addgene-full.gb" }, @@ -53254,7 +67165,10 @@ "plasmid_name": "pDONR223_KRAS_p.D33E", "sequence-type": "addgene-full", "addgene_id": "81659", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -53266,7 +67180,10 @@ "plasmid_name": "pDestattB (pCM268)", "sequence-type": "addgene-full", "addgene_id": "68313", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.23989", + "https://www.ncbi.nlm.nih.gov/pubmed/23723152" + ], "kit": null, "file": "data/addgene_plasmids/68313.addgene-full.gb" }, @@ -53275,7 +67192,10 @@ "plasmid_name": "pMLS544", "sequence-type": "addgene-full", "addgene_id": "188882", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "file": "data/addgene_plasmids/188882.addgene-full.gb" }, @@ -53284,7 +67204,10 @@ "plasmid_name": "pDONR223_LacZ", "sequence-type": "depositor-full", "addgene_id": "25893", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "file": "data/addgene_plasmids/25893.depositor-full.gb" }, @@ -53293,7 +67216,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf10", "sequence-type": "addgene-full", "addgene_id": "158380", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158380.addgene-full.gb" }, @@ -53302,7 +67228,10 @@ "plasmid_name": "pDEST myc MOV10 K530A", "sequence-type": "depositor-full", "addgene_id": "51719", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.03.017", + "https://www.ncbi.nlm.nih.gov/pubmed/24726324" + ], "kit": null, "file": "data/addgene_plasmids/51719.depositor-full.gb" }, @@ -53311,7 +67240,10 @@ "plasmid_name": "TFORF3526", "sequence-type": "depositor-full", "addgene_id": "145002", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145002.depositor-full.gb" }, @@ -53320,7 +67252,10 @@ "plasmid_name": "pME-TCAP", "sequence-type": "addgene-full", "addgene_id": "109549", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109549.addgene-full.gb" }, @@ -53329,7 +67264,10 @@ "plasmid_name": "pENT-L3-eBra-L4", "sequence-type": "addgene-full", "addgene_id": "186368", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186368.addgene-full.gb" }, @@ -53338,7 +67276,10 @@ "plasmid_name": "pDest40 DHFR.dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134735", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "file": "data/addgene_plasmids/134735.addgene-full.gb" }, @@ -53347,7 +67288,10 @@ "plasmid_name": "pLV[TetOn]-Puro-TRE3G>mAscl1", "sequence-type": "addgene-full", "addgene_id": "198755", - "references": [], + "references": [ + "https://doi.org/10.1038/s41380-021-01117-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33972691" + ], "kit": null, "file": "data/addgene_plasmids/198755.addgene-full.gb" }, @@ -53356,7 +67300,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-YTHDF2", "sequence-type": "depositor-full", "addgene_id": "38089", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38089.depositor-full.gb" }, @@ -53365,7 +67312,10 @@ "plasmid_name": "pDONR221-MFSD5_STOP", "sequence-type": "addgene-full", "addgene_id": "161107", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161107.addgene-full.gb" }, @@ -53374,7 +67324,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-mir-125", "sequence-type": "depositor-full", "addgene_id": "46667", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46667.depositor-full.gb" }, @@ -53383,7 +67336,10 @@ "plasmid_name": "pDONR223_SCEL_p.S10Y", "sequence-type": "addgene-full", "addgene_id": "81522", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -53395,7 +67351,10 @@ "plasmid_name": "SITS-ccdb-mCherry", "sequence-type": "addgene-full", "addgene_id": "118753", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/118753.addgene-full.gb" }, @@ -53404,7 +67363,10 @@ "plasmid_name": "actc1b-mKate2-rab39a", "sequence-type": "addgene-full", "addgene_id": "109632", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109632.addgene-full.gb" }, @@ -53413,7 +67375,10 @@ "plasmid_name": "TFORF3240", "sequence-type": "addgene-full", "addgene_id": "144716", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144716.addgene-full.gb" }, @@ -53422,7 +67387,10 @@ "plasmid_name": "pHAGE-FLT1-L778P", "sequence-type": "addgene-full", "addgene_id": "116396", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116396.addgene-full.gb" }, @@ -53431,7 +67399,10 @@ "plasmid_name": "hsp70l: hAPOB48-mCherry.", "sequence-type": "addgene-full", "addgene_id": "140639", - "references": [], + "references": [ + "https://doi.org/10.1194/jlr.RA119000259", + "https://www.ncbi.nlm.nih.gov/pubmed/31888978" + ], "kit": null, "file": "data/addgene_plasmids/140639.addgene-full.gb" }, @@ -53440,7 +67411,10 @@ "plasmid_name": "pDONR223_WNK3_p.E417Q", "sequence-type": "addgene-full", "addgene_id": "81716", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -53452,7 +67426,10 @@ "plasmid_name": "pMLS415", "sequence-type": "addgene-full", "addgene_id": "114272", - "references": [], + "references": [ + "https://doi.org/10.17912/DDVH-BG64", + "https://www.ncbi.nlm.nih.gov/pubmed/32550388" + ], "kit": null, "file": "data/addgene_plasmids/114272.addgene-full.gb" }, @@ -53461,7 +67438,9 @@ "plasmid_name": "pME H2B mCerulean (JDW 1150)", "sequence-type": "addgene-full", "addgene_id": "224543", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224543.addgene-full.gb" }, @@ -53470,7 +67449,10 @@ "plasmid_name": "p5E_GGWDest+", "sequence-type": "depositor-full", "addgene_id": "49319", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -53482,7 +67464,10 @@ "plasmid_name": "pDONR221-SLC45A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161333", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161333.addgene-full.gb" }, @@ -53491,7 +67476,10 @@ "plasmid_name": "pAG306GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14379", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -53503,7 +67491,10 @@ "plasmid_name": "pGWB519", "sequence-type": "depositor-full", "addgene_id": "74861", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74861.depositor-full.gb" }, @@ -53512,7 +67503,10 @@ "plasmid_name": "pAWH-Rluc-let-7-A114-N40-HhR", "sequence-type": "depositor-full", "addgene_id": "50555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.09.024", + "https://www.ncbi.nlm.nih.gov/pubmed/23123195" + ], "kit": null, "file": "data/addgene_plasmids/50555.depositor-full.gb" }, @@ -53521,7 +67515,10 @@ "plasmid_name": "pER8 cHA-AIP2", "sequence-type": "addgene-full", "addgene_id": "118687", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118687.addgene-full.gb" }, @@ -53530,7 +67527,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP1_stop", "sequence-type": "addgene-full", "addgene_id": "168544", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168544.addgene-full.gb" }, @@ -53539,7 +67539,10 @@ "plasmid_name": "pAFMW-Nbr[R272A,K276A, R280A,K284A]", "sequence-type": "addgene-full", "addgene_id": "188599", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188599.addgene-full.gb" }, @@ -53548,7 +67551,10 @@ "plasmid_name": "pDEST17-hOPTN", "sequence-type": "addgene-full", "addgene_id": "23053", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2007.07.041", + "https://www.ncbi.nlm.nih.gov/pubmed/17702576" + ], "kit": null, "file": "data/addgene_plasmids/23053.addgene-full.gb" }, @@ -53557,7 +67563,10 @@ "plasmid_name": "p7612 MSCV-P C-FlagHA 16E7 E10K", "sequence-type": "addgene-full", "addgene_id": "163303", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1819534116", + "https://www.ncbi.nlm.nih.gov/pubmed/30894485" + ], "kit": null, "file": "data/addgene_plasmids/163303.addgene-full.gb" }, @@ -53566,7 +67575,10 @@ "plasmid_name": "TFORF3500", "sequence-type": "addgene-full", "addgene_id": "144976", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144976.addgene-full.gb" }, @@ -53575,7 +67587,9 @@ "plasmid_name": "pDONR221-ILF3(2of2)", "sequence-type": "addgene-full", "addgene_id": "166181", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166181.addgene-full.gb" }, @@ -53584,7 +67598,10 @@ "plasmid_name": "pTol2-CreLite", "sequence-type": "addgene-full", "addgene_id": "131783", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.232", + "https://www.ncbi.nlm.nih.gov/pubmed/32745301" + ], "kit": null, "file": "data/addgene_plasmids/131783.addgene-full.gb" }, @@ -53593,7 +67610,10 @@ "plasmid_name": "pHAGE-EGFR-E709K", "sequence-type": "addgene-full", "addgene_id": "116242", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116242.addgene-full.gb" }, @@ -53602,7 +67622,10 @@ "plasmid_name": "pENTR-SLC66A4_STOP", "sequence-type": "addgene-full", "addgene_id": "221421", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221421.addgene-full.gb" }, @@ -53611,7 +67634,10 @@ "plasmid_name": "pENTR1A-3XFlag-WT-MEFV", "sequence-type": "addgene-full", "addgene_id": "167018", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-2449-4_12", + "https://www.ncbi.nlm.nih.gov/pubmed/35759198" + ], "kit": null, "file": "data/addgene_plasmids/167018.addgene-full.gb" }, @@ -53620,7 +67646,10 @@ "plasmid_name": "pB-TAG-HES7", "sequence-type": "addgene-full", "addgene_id": "130935", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.07.090", + "https://www.ncbi.nlm.nih.gov/pubmed/31461642" + ], "kit": null, "file": "data/addgene_plasmids/130935.addgene-full.gb" }, @@ -53629,7 +67658,10 @@ "plasmid_name": "pDONR221-MFSD8_STOP", "sequence-type": "addgene-full", "addgene_id": "161048", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161048.addgene-full.gb" }, @@ -53638,7 +67670,10 @@ "plasmid_name": "pDONR223_CDC45_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82990", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82990.addgene-full.gb" }, @@ -53647,7 +67682,10 @@ "plasmid_name": "KN206: pMVP/eCFP-DEST", "sequence-type": "addgene-full", "addgene_id": "121854", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121854.addgene-full.gb" }, @@ -53656,7 +67694,10 @@ "plasmid_name": "TFORF3183", "sequence-type": "addgene-full", "addgene_id": "144659", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144659.addgene-full.gb" }, @@ -53665,7 +67706,6 @@ "plasmid_name": "R777-E353 Hs.TSC1", "sequence-type": "depositor-full", "addgene_id": "70637", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -53677,7 +67717,10 @@ "plasmid_name": "pAG304GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14184", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -53689,7 +67732,10 @@ "plasmid_name": "pCFJ350 - MCS(ttTi5605, II)", "sequence-type": "depositor-full", "addgene_id": "34866", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34866.depositor-full.gb" }, @@ -53698,7 +67744,10 @@ "plasmid_name": "pHAGE-BRAF-D594V", "sequence-type": "addgene-full", "addgene_id": "116139", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116139.addgene-full.gb" }, @@ -53707,7 +67756,10 @@ "plasmid_name": "pDONR221-SLC12A1_STOP", "sequence-type": "depositor-full", "addgene_id": "161062", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161062.depositor-full.gb" }, @@ -53716,7 +67768,6 @@ "plasmid_name": "R777-E347 Hs.TIAM1", "sequence-type": "addgene-full", "addgene_id": "70631", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -53728,7 +67779,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a N", "sequence-type": "addgene-full", "addgene_id": "89383", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89383.addgene-full.gb" }, @@ -53749,7 +67803,10 @@ "plasmid_name": "pDONR223_FBXO15_WT", "sequence-type": "addgene-full", "addgene_id": "81839", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -53761,7 +67818,10 @@ "plasmid_name": "pDONR221_SLC17A1", "sequence-type": "addgene-full", "addgene_id": "131888", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131888.addgene-full.gb" }, @@ -53770,7 +67830,10 @@ "plasmid_name": "pAC1804_pmax-dCasRx-RBM38", "sequence-type": "addgene-full", "addgene_id": "118638", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118638.addgene-full.gb" }, @@ -53779,7 +67842,10 @@ "plasmid_name": "p3E-Rab41", "sequence-type": "addgene-full", "addgene_id": "109759", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109759.addgene-full.gb" }, @@ -53788,7 +67854,10 @@ "plasmid_name": "pSM1", "sequence-type": "addgene-full", "addgene_id": "85752", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mimet.2016.12.017", + "https://www.ncbi.nlm.nih.gov/pubmed/28017692" + ], "kit": null, "file": "data/addgene_plasmids/85752.addgene-full.gb" }, @@ -53797,7 +67866,6 @@ "plasmid_name": "p667-UBC-DYRK3-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158190", - "references": [], "kit": null, "file": "data/addgene_plasmids/158190.addgene-full.gb" }, @@ -53806,7 +67874,10 @@ "plasmid_name": "LB601: pMVP/PB/eGFP-DEST", "sequence-type": "addgene-full", "addgene_id": "121870", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121870.addgene-full.gb" }, @@ -53815,7 +67886,10 @@ "plasmid_name": "pGH8 - pRAB-3::mCherry::unc-54utr", "sequence-type": "addgene-full", "addgene_id": "19359", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.248", + "https://www.ncbi.nlm.nih.gov/pubmed/18953339" + ], "kit": null, "file": "data/addgene_plasmids/19359.addgene-full.gb" }, @@ -53824,7 +67898,10 @@ "plasmid_name": "pDONR223_GALNTL5_p.G309E", "sequence-type": "addgene-full", "addgene_id": "81449", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -53836,7 +67913,10 @@ "plasmid_name": "pENTR1A-SynTetOff-GFP", "sequence-type": "addgene-full", "addgene_id": "190230", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190230.addgene-full.gb" }, @@ -53845,7 +67925,10 @@ "plasmid_name": "pCZGY2842", "sequence-type": "addgene-full", "addgene_id": "87762", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/87762.addgene-full.gb" }, @@ -53854,7 +67937,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP8_nostop", "sequence-type": "addgene-full", "addgene_id": "149311", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149311.addgene-full.gb" }, @@ -53863,7 +67949,10 @@ "plasmid_name": "pXf20pemIK-GW", "sequence-type": "addgene-full", "addgene_id": "126576", - "references": [], + "references": [ + "https://doi.org/10.1094/PHYTO-02-16-0097-R", + "https://www.ncbi.nlm.nih.gov/pubmed/27088393" + ], "kit": null, "file": "data/addgene_plasmids/126576.addgene-full.gb" }, @@ -53872,7 +67961,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp6", "sequence-type": "addgene-full", "addgene_id": "168934", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168934.addgene-full.gb" }, @@ -53881,7 +67973,10 @@ "plasmid_name": "pHAGE-BRAF-N486D", "sequence-type": "addgene-full", "addgene_id": "116186", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116186.addgene-full.gb" }, @@ -53890,7 +67985,10 @@ "plasmid_name": "pINDUCER21-puro_TAOK3", "sequence-type": "addgene-full", "addgene_id": "209778", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/209778.addgene-full.gb" }, @@ -53899,7 +67997,10 @@ "plasmid_name": "CNOT3", "sequence-type": "addgene-full", "addgene_id": "155467", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155467.addgene-full.gb" }, @@ -53908,7 +68009,10 @@ "plasmid_name": "TFORF3030", "sequence-type": "addgene-full", "addgene_id": "144506", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144506.addgene-full.gb" }, @@ -53917,7 +68021,9 @@ "plasmid_name": "p5E-EF1a/b-actin", "sequence-type": "depositor-full", "addgene_id": "82583", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82583.depositor-full.gb" }, @@ -53926,7 +68032,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.D162E", "sequence-type": "addgene-full", "addgene_id": "81732", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -53938,7 +68047,10 @@ "plasmid_name": "pJOG131", "sequence-type": "addgene-full", "addgene_id": "105337", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -53950,7 +68062,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CSNK2A2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189870", - "references": [], "kit": null, "file": "data/addgene_plasmids/189870.addgene-full.gb" }, @@ -53959,7 +68070,10 @@ "plasmid_name": "A1-LCD Patchy", "sequence-type": "addgene-full", "addgene_id": "169719", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "file": "data/addgene_plasmids/169719.addgene-full.gb" }, @@ -53968,7 +68082,10 @@ "plasmid_name": "pDONR221-SLC28A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161317", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161317.addgene-full.gb" }, @@ -53977,7 +68094,10 @@ "plasmid_name": "p{Mhc-F4-678-eGFP::KD,attB}", "sequence-type": "addgene-full", "addgene_id": "182183", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182183.addgene-full.gb" }, @@ -53986,7 +68106,10 @@ "plasmid_name": "pDONR223_KLRC2_WT", "sequence-type": "addgene-full", "addgene_id": "81886", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -53998,7 +68121,10 @@ "plasmid_name": "A1-LCD+7R+12D", "sequence-type": "addgene-full", "addgene_id": "178678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178678.addgene-full.gb" }, @@ -54007,7 +68133,10 @@ "plasmid_name": "R620-M12-303: CMV51p> SARS-CoV-2 S(1-1208)-2P-T4f-3C-His8-Strep2x2 B.1.351", "sequence-type": "addgene-full", "addgene_id": "170196", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/170196.addgene-full.gb" }, @@ -54016,7 +68145,10 @@ "plasmid_name": "pDONR-IAA4_no stop", "sequence-type": "depositor-full", "addgene_id": "83866", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83866.depositor-full.gb" }, @@ -54025,7 +68157,10 @@ "plasmid_name": "pDEST14-SpyCatcher", "sequence-type": "addgene-full", "addgene_id": "35044", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1115485109", + "https://www.ncbi.nlm.nih.gov/pubmed/22366317" + ], "kit": null, "file": "data/addgene_plasmids/35044.addgene-full.gb" }, @@ -54034,7 +68169,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF3b_stop", "sequence-type": "addgene-full", "addgene_id": "168560", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168560.addgene-full.gb" }, @@ -54043,7 +68181,10 @@ "plasmid_name": "pME-mKOFP2-CAAX", "sequence-type": "depositor-full", "addgene_id": "75155", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -54055,7 +68196,10 @@ "plasmid_name": "pHAGE-EGFR-L718P", "sequence-type": "addgene-full", "addgene_id": "116266", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116266.addgene-full.gb" }, @@ -54064,7 +68208,6 @@ "plasmid_name": "His SUMO TEV W131G SPOP 1-374", "sequence-type": "addgene-full", "addgene_id": "197019", - "references": [], "kit": null, "file": "data/addgene_plasmids/197019.addgene-full.gb" }, @@ -54073,7 +68216,10 @@ "plasmid_name": "TFORF3476", "sequence-type": "addgene-full", "addgene_id": "144952", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144952.addgene-full.gb" }, @@ -54082,7 +68228,10 @@ "plasmid_name": "pLX302 PCSK5-V5 puro", "sequence-type": "addgene-full", "addgene_id": "98389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98389.addgene-full.gb" }, @@ -54091,7 +68240,10 @@ "plasmid_name": "pMpGWBs02", "sequence-type": "addgene-full", "addgene_id": "222478", - "references": [], + "references": [ + "https://doi.org/10.1093/jxb/erae256", + "https://www.ncbi.nlm.nih.gov/pubmed/38824404" + ], "kit": null, "file": "data/addgene_plasmids/222478.addgene-full.gb" }, @@ -54100,7 +68252,10 @@ "plasmid_name": "pDONR221 CARD8 PAM F370G", "sequence-type": "addgene-full", "addgene_id": "169979", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169979.addgene-full.gb" }, @@ -54109,7 +68264,10 @@ "plasmid_name": "pKG-GW1-GlcisPT", "sequence-type": "addgene-full", "addgene_id": "203172", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "file": "data/addgene_plasmids/203172.addgene-full.gb" }, @@ -54118,7 +68276,10 @@ "plasmid_name": "p21-M680I-MEFV", "sequence-type": "addgene-full", "addgene_id": "134711", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "file": "data/addgene_plasmids/134711.addgene-full.gb" }, @@ -54127,7 +68288,10 @@ "plasmid_name": "TFORF3256", "sequence-type": "addgene-full", "addgene_id": "144732", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144732.addgene-full.gb" }, @@ -54136,7 +68300,10 @@ "plasmid_name": "actc1b-mKate2-rab26", "sequence-type": "addgene-full", "addgene_id": "109616", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109616.addgene-full.gb" }, @@ -54145,7 +68312,10 @@ "plasmid_name": "pDON223 Spike S982A", "sequence-type": "addgene-full", "addgene_id": "180067", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180067.addgene-full.gb" }, @@ -54154,7 +68324,6 @@ "plasmid_name": "R777-E248 Hs.RASGRP3-nostop", "sequence-type": "depositor-full", "addgene_id": "70532", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -54166,7 +68335,10 @@ "plasmid_name": "pGL4_CRE-CMVmin-luc2", "sequence-type": "addgene-full", "addgene_id": "194384", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194384.addgene-full.gb" }, @@ -54175,7 +68347,10 @@ "plasmid_name": "TFORF3410", "sequence-type": "addgene-full", "addgene_id": "144886", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144886.addgene-full.gb" }, @@ -54184,7 +68359,10 @@ "plasmid_name": "pAG305GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14281", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -54196,7 +68374,10 @@ "plasmid_name": "pDONR223-ZNF174", "sequence-type": "addgene-full", "addgene_id": "88091", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88091.addgene-full.gb" }, @@ -54205,7 +68386,10 @@ "plasmid_name": "pDONR221-SLC14A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161123", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161123.addgene-full.gb" }, @@ -54214,7 +68398,10 @@ "plasmid_name": "pDONR223_SAMHD1_p.I515T", "sequence-type": "addgene-full", "addgene_id": "81506", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -54226,7 +68413,10 @@ "plasmid_name": "pDONR223_RBM10_p.E4K", "sequence-type": "addgene-full", "addgene_id": "82860", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82860.addgene-full.gb" }, @@ -54235,7 +68425,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp15", "sequence-type": "depositor-full", "addgene_id": "168875", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168875.depositor-full.gb" }, @@ -54244,7 +68437,10 @@ "plasmid_name": "pQLinkHD_mTFP1", "sequence-type": "addgene-full", "addgene_id": "118858", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "file": "data/addgene_plasmids/118858.addgene-full.gb" }, @@ -54253,7 +68449,10 @@ "plasmid_name": "pHAGE-ERBB2-E321G", "sequence-type": "addgene-full", "addgene_id": "116329", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116329.addgene-full.gb" }, @@ -54262,7 +68461,10 @@ "plasmid_name": "TFORF2973", "sequence-type": "addgene-full", "addgene_id": "144449", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144449.addgene-full.gb" }, @@ -54271,7 +68473,10 @@ "plasmid_name": "pDONR221-ZNF507", "sequence-type": "depositor-full", "addgene_id": "101565", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101565.depositor-full.gb" }, @@ -54280,7 +68485,6 @@ "plasmid_name": "pCWX-R4DESTR2-PGK-PURO", "sequence-type": "addgene-full", "addgene_id": "114319", - "references": [], "kit": null, "file": "data/addgene_plasmids/114319.addgene-full.gb" }, @@ -54289,7 +68493,10 @@ "plasmid_name": "ACO2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98312", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98312.addgene-full.gb" }, @@ -54298,7 +68505,10 @@ "plasmid_name": "pDONR221-SLC27A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161258", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161258.addgene-full.gb" }, @@ -54307,7 +68517,10 @@ "plasmid_name": "5'-BirA-FLAG Kdm1a-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212088", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212088.addgene-full.gb" }, @@ -54316,7 +68529,6 @@ "plasmid_name": "HCP1", "sequence-type": "addgene-full", "addgene_id": "166103", - "references": [], "kit": null, "file": "data/addgene_plasmids/166103.addgene-full.gb" }, @@ -54325,7 +68537,10 @@ "plasmid_name": "GFP-muSOX", "sequence-type": "addgene-full", "addgene_id": "131701", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.37663", + "https://www.ncbi.nlm.nih.gov/pubmed/30281021" + ], "kit": null, "file": "data/addgene_plasmids/131701.addgene-full.gb" }, @@ -54334,7 +68549,10 @@ "plasmid_name": "pSLIK 3XFLAG-wtGATA6-3XAU1 neo", "sequence-type": "addgene-full", "addgene_id": "72618", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "file": "data/addgene_plasmids/72618.addgene-full.gb" }, @@ -54343,7 +68561,6 @@ "plasmid_name": "p41Hyg 3-F GW", "sequence-type": "addgene-full", "addgene_id": "58555", - "references": [], "kit": null, "file": "data/addgene_plasmids/58555.addgene-full.gb" }, @@ -54352,7 +68569,10 @@ "plasmid_name": "TFORF3164", "sequence-type": "addgene-full", "addgene_id": "144640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144640.addgene-full.gb" }, @@ -54361,7 +68581,6 @@ "plasmid_name": "R777-E018 Hs.CCND1-nostop", "sequence-type": "depositor-full", "addgene_id": "70302", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -54373,7 +68592,10 @@ "plasmid_name": "pDONR223_CHD2_p.P474R", "sequence-type": "addgene-full", "addgene_id": "81474", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -54385,7 +68607,10 @@ "plasmid_name": "pDONR223_DECR1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82989", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82989.addgene-full.gb" }, @@ -54394,7 +68619,10 @@ "plasmid_name": "pDONR221-SLC12A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161051", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161051.addgene-full.gb" }, @@ -54403,7 +68631,10 @@ "plasmid_name": "pDONR223_POT1_WT", "sequence-type": "addgene-full", "addgene_id": "81820", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -54427,7 +68658,10 @@ "plasmid_name": "pDONR223_C19orf48_WT", "sequence-type": "addgene-full", "addgene_id": "81794", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -54439,7 +68673,10 @@ "plasmid_name": "pMMK ENTR 2 CMV mKO2-hCdt1", "sequence-type": "addgene-full", "addgene_id": "206282", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206282.addgene-full.gb" }, @@ -54448,7 +68685,10 @@ "plasmid_name": "pGWB451", "sequence-type": "depositor-full", "addgene_id": "74833", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74833.depositor-full.gb" }, @@ -54457,7 +68697,6 @@ "plasmid_name": "R777-E214 Hs.RAF1-nostop", "sequence-type": "depositor-full", "addgene_id": "70498", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -54469,7 +68708,10 @@ "plasmid_name": "pMMLV-mRFP1-P2A-Puro", "sequence-type": "addgene-full", "addgene_id": "160228", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.07.009", + "https://www.ncbi.nlm.nih.gov/pubmed/34352222" + ], "kit": null, "file": "data/addgene_plasmids/160228.addgene-full.gb" }, @@ -54478,7 +68720,10 @@ "plasmid_name": "pDEST17-UbE2G2", "sequence-type": "addgene-full", "addgene_id": "15791", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "file": "data/addgene_plasmids/15791.addgene-full.gb" }, @@ -54487,7 +68732,10 @@ "plasmid_name": "pHAGE-AXL-Q83R", "sequence-type": "addgene-full", "addgene_id": "116120", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116120.addgene-full.gb" }, @@ -54496,7 +68744,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp12", "sequence-type": "addgene-full", "addgene_id": "168909", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168909.addgene-full.gb" }, @@ -54505,7 +68756,10 @@ "plasmid_name": "pKRG3-mU6-PUb-hSpCas9-pAc", "sequence-type": "addgene-full", "addgene_id": "162163", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-80436-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33436886" + ], "kit": null, "file": "data/addgene_plasmids/162163.addgene-full.gb" }, @@ -54514,7 +68768,10 @@ "plasmid_name": "SPOP-V5 (W131G)", "sequence-type": "addgene-full", "addgene_id": "169724", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169724.addgene-full.gb" }, @@ -54523,7 +68780,10 @@ "plasmid_name": "pSLIK_hygro_3xflag_Luciferase", "sequence-type": "addgene-full", "addgene_id": "136528", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136528.addgene-full.gb" }, @@ -54532,7 +68792,10 @@ "plasmid_name": "pLenti6_YAP1-V5", "sequence-type": "addgene-full", "addgene_id": "173002", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/173002.addgene-full.gb" }, @@ -54541,7 +68804,10 @@ "plasmid_name": "KH001: pMVP (L3-L2) V5 epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121762", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121762.addgene-full.gb" }, @@ -54550,7 +68816,10 @@ "plasmid_name": "p3E_BAG3wt-eGFP", "sequence-type": "addgene-full", "addgene_id": "98180", - "references": [], + "references": [ + "https://doi.org/10.1007/s00401-014-1344-5", + "https://www.ncbi.nlm.nih.gov/pubmed/25273835" + ], "kit": null, "file": "data/addgene_plasmids/98180.addgene-full.gb" }, @@ -54559,7 +68828,10 @@ "plasmid_name": "pENTR223-BALF2", "sequence-type": "addgene-full", "addgene_id": "198578", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198578.addgene-full.gb" }, @@ -54568,7 +68840,10 @@ "plasmid_name": "pDONR223_EGFR_p.D837A", "sequence-type": "addgene-full", "addgene_id": "82912", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82912.addgene-full.gb" }, @@ -54577,7 +68852,9 @@ "plasmid_name": "pDONR221-PRDX4", "sequence-type": "addgene-full", "addgene_id": "166198", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166198.addgene-full.gb" }, @@ -54586,7 +68863,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF3B", "sequence-type": "addgene-full", "addgene_id": "154417", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154417.addgene-full.gb" }, @@ -54595,7 +68875,6 @@ "plasmid_name": "6xHis-WT-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192092", - "references": [], "kit": null, "file": "data/addgene_plasmids/192092.addgene-full.gb" }, @@ -54604,7 +68883,10 @@ "plasmid_name": "pDEST-Spe3-Venus-RfA", "sequence-type": "addgene-full", "addgene_id": "186371", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186371.addgene-full.gb" }, @@ -54613,7 +68895,10 @@ "plasmid_name": "pGGEV_4'_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49305", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -54625,7 +68910,6 @@ "plasmid_name": "Cas9 gateway compatible", "sequence-type": "addgene-full", "addgene_id": "128321", - "references": [], "kit": null, "file": "data/addgene_plasmids/128321.addgene-full.gb" }, @@ -54634,7 +68918,10 @@ "plasmid_name": "pQCXIP X2 DEST (w270-1)", "sequence-type": "depositor-full", "addgene_id": "17474", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17474.depositor-full.gb" }, @@ -54643,7 +68930,10 @@ "plasmid_name": "pDONR223_SMAD4_p.G386V", "sequence-type": "addgene-full", "addgene_id": "82772", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82772.addgene-full.gb" }, @@ -54652,7 +68942,10 @@ "plasmid_name": "TroponinT-GCaMP5-Zeo", "sequence-type": "addgene-full", "addgene_id": "46027", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "file": "data/addgene_plasmids/46027.addgene-full.gb" }, @@ -54661,7 +68954,10 @@ "plasmid_name": "pIF4", "sequence-type": "addgene-full", "addgene_id": "196069", - "references": [], + "references": [ + "https://doi.org/10.1128/msphere.00594-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36655998" + ], "kit": null, "file": "data/addgene_plasmids/196069.addgene-full.gb" }, @@ -54670,7 +68966,10 @@ "plasmid_name": "MLKS2delTMexp", "sequence-type": "addgene-full", "addgene_id": "130863", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "file": "data/addgene_plasmids/130863.addgene-full.gb" }, @@ -54679,7 +68978,10 @@ "plasmid_name": "pAG423GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14365", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -54691,7 +68993,10 @@ "plasmid_name": "CAG FUCCI", "sequence-type": "addgene-full", "addgene_id": "175266", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199637", + "https://www.ncbi.nlm.nih.gov/pubmed/35266986" + ], "kit": null, "file": "data/addgene_plasmids/175266.addgene-full.gb" }, @@ -54700,7 +69005,10 @@ "plasmid_name": "pEBTetBl-CLIP-Centrin2", "sequence-type": "addgene-full", "addgene_id": "136833", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136833.addgene-full.gb" }, @@ -54709,7 +69017,10 @@ "plasmid_name": "pDONR221-TAF15 No Stop", "sequence-type": "addgene-full", "addgene_id": "84896", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1109434108", + "https://www.ncbi.nlm.nih.gov/pubmed/22065782" + ], "kit": null, "file": "data/addgene_plasmids/84896.addgene-full.gb" }, @@ -54718,7 +69029,10 @@ "plasmid_name": "pDONR223 SCAF4", "sequence-type": "addgene-full", "addgene_id": "122464", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "file": "data/addgene_plasmids/122464.addgene-full.gb" }, @@ -54727,7 +69041,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hADAM10(aa455-550)", "sequence-type": "addgene-full", "addgene_id": "189556", - "references": [], "kit": null, "file": "data/addgene_plasmids/189556.addgene-full.gb" }, @@ -54736,7 +69049,10 @@ "plasmid_name": "pDONR221-SLC25A51_STOP", "sequence-type": "addgene-full", "addgene_id": "161185", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161185.addgene-full.gb" }, @@ -54745,7 +69061,10 @@ "plasmid_name": "LIIbeta F 4-5", "sequence-type": "depositor-full", "addgene_id": "54362", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54362.depositor-full.gb" }, @@ -54754,7 +69073,10 @@ "plasmid_name": "pEBTetD-SNAP-POC5", "sequence-type": "addgene-full", "addgene_id": "136787", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136787.addgene-full.gb" }, @@ -54763,7 +69085,10 @@ "plasmid_name": "pDONR223-ZNF706", "sequence-type": "addgene-full", "addgene_id": "88037", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88037.addgene-full.gb" }, @@ -54772,7 +69097,10 @@ "plasmid_name": "TFORF3344", "sequence-type": "addgene-full", "addgene_id": "144820", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144820.addgene-full.gb" }, @@ -54781,7 +69109,10 @@ "plasmid_name": "pENTR-L4-UBI-L1R", "sequence-type": "depositor-full", "addgene_id": "45959", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-61779-095-9_8", + "https://www.ncbi.nlm.nih.gov/pubmed/21590398" + ], "kit": null, "file": "data/addgene_plasmids/45959.depositor-full.gb" }, @@ -54790,7 +69121,10 @@ "plasmid_name": "pHAGE-EGFR-V742A", "sequence-type": "addgene-full", "addgene_id": "116314", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116314.addgene-full.gb" }, @@ -54799,7 +69133,6 @@ "plasmid_name": "pREP41xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79023", - "references": [], "kit": null, "file": "data/addgene_plasmids/79023.depositor-full.gb" }, @@ -54808,7 +69141,10 @@ "plasmid_name": "pDONR221_SLC17A8", "sequence-type": "addgene-full", "addgene_id": "131961", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131961.addgene-full.gb" }, @@ -54817,7 +69153,10 @@ "plasmid_name": "TFORF3318", "sequence-type": "addgene-full", "addgene_id": "144794", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144794.addgene-full.gb" }, @@ -54826,7 +69165,10 @@ "plasmid_name": "pME-actn2", "sequence-type": "addgene-full", "addgene_id": "109550", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109550.addgene-full.gb" }, @@ -54835,7 +69177,10 @@ "plasmid_name": "TFORF2998", "sequence-type": "addgene-full", "addgene_id": "144474", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144474.addgene-full.gb" }, @@ -54844,7 +69189,6 @@ "plasmid_name": "p667-UBC-VRK3-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189902", - "references": [], "kit": null, "file": "data/addgene_plasmids/189902.addgene-full.gb" }, @@ -54853,7 +69197,10 @@ "plasmid_name": "pDONR223_HAPLN1_p.S326N", "sequence-type": "addgene-full", "addgene_id": "81640", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -54865,7 +69212,10 @@ "plasmid_name": "pAG423GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14198", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -54877,7 +69227,10 @@ "plasmid_name": "pGL4_EGR1p-BC1490-luc2", "sequence-type": "addgene-full", "addgene_id": "214654", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214654.addgene-full.gb" }, @@ -54886,7 +69239,10 @@ "plasmid_name": "pDONR223_PPARG_WT", "sequence-type": "addgene-full", "addgene_id": "82223", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82223.addgene-full.gb" }, @@ -54895,7 +69251,10 @@ "plasmid_name": "pInducer20 EGFP-TEADi", "sequence-type": "addgene-full", "addgene_id": "140145", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-15301-0", + "https://www.ncbi.nlm.nih.gov/pubmed/32193376" + ], "kit": null, "file": "data/addgene_plasmids/140145.addgene-full.gb" }, @@ -54904,7 +69263,10 @@ "plasmid_name": "pDEST15-Eps8L2_367-496", "sequence-type": "addgene-full", "addgene_id": "196538", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196538.addgene-full.gb" }, @@ -54913,7 +69275,10 @@ "plasmid_name": "pENTR223-BLRF1", "sequence-type": "addgene-full", "addgene_id": "195771", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195771.addgene-full.gb" }, @@ -54922,7 +69287,6 @@ "plasmid_name": "pENTR4 CDS A. thaliana PARP1", "sequence-type": "addgene-full", "addgene_id": "175818", - "references": [], "kit": null, "file": "data/addgene_plasmids/175818.addgene-full.gb" }, @@ -54931,7 +69295,10 @@ "plasmid_name": "Flag-HA-PARP11", "sequence-type": "addgene-full", "addgene_id": "22556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22556.addgene-full.gb" }, @@ -54940,7 +69307,10 @@ "plasmid_name": "pDONR221_SLC48A1", "sequence-type": "addgene-full", "addgene_id": "132156", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132156.addgene-full.gb" }, @@ -54949,7 +69319,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(KTM)-IRES-Neo", "sequence-type": "addgene-full", "addgene_id": "128670", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128670.addgene-full.gb" }, @@ -54958,7 +69331,6 @@ "plasmid_name": "DDX3X - S583G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216584", - "references": [], "kit": null, "file": "data/addgene_plasmids/216584.addgene-full.gb" }, @@ -54967,7 +69339,10 @@ "plasmid_name": "pWS493", "sequence-type": "addgene-full", "addgene_id": "123037", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123037.addgene-full.gb" }, @@ -54976,7 +69351,10 @@ "plasmid_name": "pLenti-PGK-flag-RAP1B-N17-neo", "sequence-type": "addgene-full", "addgene_id": "156176", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156176.addgene-full.gb" }, @@ -54985,7 +69363,10 @@ "plasmid_name": "pEAHISSSO2452", "sequence-type": "addgene-full", "addgene_id": "97059", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97059.addgene-full.gb" }, @@ -54994,7 +69375,10 @@ "plasmid_name": "pAG426GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14251", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -55006,7 +69390,9 @@ "plasmid_name": "pMpGWB308", "sequence-type": "depositor-full", "addgene_id": "68636", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68636.depositor-full.gb" }, @@ -55015,7 +69401,10 @@ "plasmid_name": "Puro-iDEST", "sequence-type": "depositor-full", "addgene_id": "75336", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2016.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/27133796" + ], "kit": null, "file": "data/addgene_plasmids/75336.depositor-full.gb" }, @@ -55024,7 +69413,10 @@ "plasmid_name": "pENTR-L3-IRES-EGFP-L2", "sequence-type": "depositor-full", "addgene_id": "32591", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32591.depositor-full.gb" }, @@ -55033,7 +69425,10 @@ "plasmid_name": "pINDUCER20_mStrawberry", "sequence-type": "addgene-full", "addgene_id": "161734", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2229-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32376951" + ], "kit": null, "file": "data/addgene_plasmids/161734.addgene-full.gb" }, @@ -55042,7 +69437,10 @@ "plasmid_name": "pPV-TetO-SpCas9-GR-iC-ERiP (CRONUS-Puro)", "sequence-type": "addgene-full", "addgene_id": "100596", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-017-18568-4", + "https://www.ncbi.nlm.nih.gov/pubmed/29321585" + ], "kit": null, "file": "data/addgene_plasmids/100596.addgene-full.gb" }, @@ -55051,7 +69449,10 @@ "plasmid_name": "pDONR223_HRAS_p.Q61R", "sequence-type": "addgene-full", "addgene_id": "81311", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -55063,7 +69464,10 @@ "plasmid_name": "pDest-639 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161880", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -55075,7 +69479,10 @@ "plasmid_name": "pDONR223_RBPJ_WT", "sequence-type": "addgene-full", "addgene_id": "82158", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82158.addgene-full.gb" }, @@ -55084,7 +69491,10 @@ "plasmid_name": "pDEST-EGFP-MACROD2", "sequence-type": "addgene-full", "addgene_id": "172585", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172585.addgene-full.gb" }, @@ -55093,7 +69503,10 @@ "plasmid_name": "pENTR-L3-Csy4-FokI-dCas9-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141047", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141047.addgene-full.gb" }, @@ -55102,7 +69515,10 @@ "plasmid_name": "pHAGE-PTPN11-N58K", "sequence-type": "addgene-full", "addgene_id": "116645", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116645.addgene-full.gb" }, @@ -55111,7 +69527,10 @@ "plasmid_name": "C413-E38: attB4-T7p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162929", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -55123,7 +69542,10 @@ "plasmid_name": "pDONR207-Citrine-PTS1", "sequence-type": "depositor-full", "addgene_id": "44588", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "file": "data/addgene_plasmids/44588.depositor-full.gb" }, @@ -55132,7 +69554,10 @@ "plasmid_name": "pDL5", "sequence-type": "addgene-full", "addgene_id": "175883", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175883.addgene-full.gb" }, @@ -55141,7 +69566,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP III (AA 1-84)", "sequence-type": "addgene-full", "addgene_id": "119319", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119319.addgene-full.gb" }, @@ -55150,7 +69578,10 @@ "plasmid_name": "pJA257", "sequence-type": "depositor-full", "addgene_id": "21510", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "file": "data/addgene_plasmids/21510.depositor-full.gb" }, @@ -55159,7 +69590,10 @@ "plasmid_name": "pAS2-1-Esf1", "sequence-type": "addgene-full", "addgene_id": "99987", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99987.addgene-full.gb" }, @@ -55168,7 +69602,10 @@ "plasmid_name": "pENTR D-TOPO-C3_29", "sequence-type": "depositor-full", "addgene_id": "60272", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60272.depositor-full.gb" }, @@ -55177,7 +69614,10 @@ "plasmid_name": "pHAGE-PIK3CA-E365V", "sequence-type": "addgene-full", "addgene_id": "116471", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116471.addgene-full.gb" }, @@ -55186,7 +69626,6 @@ "plasmid_name": "pAG416GAL-1x-HIV-2_PR", "sequence-type": "addgene-full", "addgene_id": "201935", - "references": [], "kit": null, "file": "data/addgene_plasmids/201935.addgene-full.gb" }, @@ -55195,7 +69634,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 E", "sequence-type": "addgene-full", "addgene_id": "141273", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141273.addgene-full.gb" }, @@ -55204,7 +69646,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) FAM149A", "sequence-type": "addgene-full", "addgene_id": "107510", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107510.addgene-full.gb" }, @@ -55213,7 +69658,10 @@ "plasmid_name": "pAG414GAL-ccdB-DsRed", "sequence-type": "addgene-full", "addgene_id": "14359", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -55225,7 +69673,10 @@ "plasmid_name": "pCS2+Paxillin-mKate", "sequence-type": "addgene-full", "addgene_id": "105974", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.22689", + "https://www.ncbi.nlm.nih.gov/pubmed/28372636" + ], "kit": null, "file": "data/addgene_plasmids/105974.addgene-full.gb" }, @@ -55234,7 +69685,10 @@ "plasmid_name": "R713-M50-303: CMV51p> Halotag-HRasHVR", "sequence-type": "addgene-full", "addgene_id": "159685", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "file": "data/addgene_plasmids/159685.addgene-full.gb" }, @@ -55243,7 +69697,10 @@ "plasmid_name": "PB-CT3G-CERP2-MG", "sequence-type": "addgene-full", "addgene_id": "175503", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175503.addgene-full.gb" }, @@ -55252,7 +69709,10 @@ "plasmid_name": "R701-X57-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) Q61L", "sequence-type": "addgene-full", "addgene_id": "159565", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159565.addgene-full.gb" }, @@ -55261,7 +69721,10 @@ "plasmid_name": "pCR8 LCOR", "sequence-type": "addgene-full", "addgene_id": "114441", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "file": "data/addgene_plasmids/114441.addgene-full.gb" }, @@ -55270,7 +69733,10 @@ "plasmid_name": "pDONR221_SLC25A51", "sequence-type": "addgene-full", "addgene_id": "132019", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132019.addgene-full.gb" }, @@ -55279,7 +69745,10 @@ "plasmid_name": "pHAGE-SMAD4", "sequence-type": "addgene-full", "addgene_id": "116791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116791.addgene-full.gb" }, @@ -55288,7 +69757,6 @@ "plasmid_name": "pEF 1-PHD-4", "sequence-type": "depositor-full", "addgene_id": "20088", - "references": [], "kit": null, "file": "data/addgene_plasmids/20088.depositor-full.gb" }, @@ -55297,7 +69765,10 @@ "plasmid_name": "pHAGE-KCNQ5__ALK", "sequence-type": "addgene-full", "addgene_id": "116825", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116825.addgene-full.gb" }, @@ -55306,7 +69777,9 @@ "plasmid_name": "pMpGWB413", "sequence-type": "depositor-full", "addgene_id": "68678", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68678.depositor-full.gb" }, @@ -55315,7 +69788,10 @@ "plasmid_name": "pDONR221_SLC38A8", "sequence-type": "addgene-full", "addgene_id": "132082", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132082.addgene-full.gb" }, @@ -55324,7 +69800,6 @@ "plasmid_name": "pLEX307-CTSL-blast", "sequence-type": "addgene-full", "addgene_id": "158467", - "references": [], "kit": null, "file": "data/addgene_plasmids/158467.addgene-full.gb" }, @@ -55333,7 +69808,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R4-bpFOG-B5::B1-NLSLacZ-B2", "sequence-type": "addgene-full", "addgene_id": "186414", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186414.addgene-full.gb" }, @@ -55342,7 +69820,10 @@ "plasmid_name": "pYPQ265E2", "sequence-type": "addgene-full", "addgene_id": "164719", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164719.addgene-full.gb" }, @@ -55351,7 +69832,10 @@ "plasmid_name": "MAC_C_ARP2", "sequence-type": "addgene-full", "addgene_id": "111658", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111658.addgene-full.gb" }, @@ -55360,7 +69844,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L1L4", "sequence-type": "depositor-full", "addgene_id": "113736", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -55372,7 +69859,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CSNK1G3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214460", - "references": [], "kit": null, "file": "data/addgene_plasmids/214460.addgene-full.gb" }, @@ -55381,7 +69867,10 @@ "plasmid_name": "pCAG/ATP9B-HA", "sequence-type": "addgene-full", "addgene_id": "209214", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209214.addgene-full.gb" }, @@ -55390,7 +69879,6 @@ "plasmid_name": "pLX_TRC311", "sequence-type": "addgene-full", "addgene_id": "113668", - "references": [], "kit": null, "file": "data/addgene_plasmids/113668.addgene-full.gb" }, @@ -55399,7 +69887,10 @@ "plasmid_name": "HS-aPKC-CAAX-mKate2", "sequence-type": "depositor-full", "addgene_id": "105950", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25600237" + ], "kit": null, "file": "data/addgene_plasmids/105950.depositor-full.gb" }, @@ -55408,7 +69899,6 @@ "plasmid_name": "pENTR-L4R1-tetO2", "sequence-type": "addgene-full", "addgene_id": "139525", - "references": [], "kit": null, "file": "data/addgene_plasmids/139525.addgene-full.gb" }, @@ -55417,7 +69907,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj13-M135R-EGFP", "sequence-type": "addgene-full", "addgene_id": "164944", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164944.addgene-full.gb" }, @@ -55426,7 +69919,10 @@ "plasmid_name": "pDONR221-XPR1_STOP", "sequence-type": "addgene-full", "addgene_id": "161472", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161472.addgene-full.gb" }, @@ -55435,7 +69931,9 @@ "plasmid_name": "pDRF'- AmTryoshka1;3-LS-L255I", "sequence-type": "addgene-full", "addgene_id": "100964", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "file": "data/addgene_plasmids/100964.addgene-full.gb" }, @@ -55444,7 +69942,10 @@ "plasmid_name": "pAAV_MLP-BC1403-luc2", "sequence-type": "addgene-full", "addgene_id": "214669", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214669.addgene-full.gb" }, @@ -55453,7 +69954,10 @@ "plasmid_name": "pT2-cryR;cldn5bCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90136", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90136.addgene-full.gb" }, @@ -55462,7 +69966,10 @@ "plasmid_name": "pDONR221-SLC35B3_STOP", "sequence-type": "depositor-full", "addgene_id": "161253", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161253.depositor-full.gb" }, @@ -55471,7 +69978,10 @@ "plasmid_name": "GFP-SMARCA4", "sequence-type": "addgene-full", "addgene_id": "65391", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65391.addgene-full.gb" }, @@ -55480,7 +69990,10 @@ "plasmid_name": "hu-TLR4 299 SNP flag pLenti 4/to/v5 pDEST", "sequence-type": "addgene-full", "addgene_id": "42650", - "references": [], + "references": [ + "https://doi.org/10.1002/hep.22697", + "https://www.ncbi.nlm.nih.gov/pubmed/19085953" + ], "kit": null, "file": "data/addgene_plasmids/42650.addgene-full.gb" }, @@ -55489,7 +70002,10 @@ "plasmid_name": "pEAHISSSO2462", "sequence-type": "addgene-full", "addgene_id": "97064", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97064.addgene-full.gb" }, @@ -55498,7 +70014,6 @@ "plasmid_name": "His8:MBP-tev-Lys-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83387", - "references": [], "kit": null, "file": "data/addgene_plasmids/83387.addgene-full.gb" }, @@ -55507,7 +70022,10 @@ "plasmid_name": "pRATIO1267", "sequence-type": "addgene-full", "addgene_id": "141301", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141301.addgene-full.gb" }, @@ -55516,7 +70034,10 @@ "plasmid_name": "pHAGE-PIK3CA-I391M", "sequence-type": "addgene-full", "addgene_id": "116503", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116503.addgene-full.gb" }, @@ -55525,7 +70046,10 @@ "plasmid_name": "pAM3110", "sequence-type": "depositor-full", "addgene_id": "40247", - "references": [], + "references": [ + "https://doi.org/10.1099/mic.0.28030-0", + "https://www.ncbi.nlm.nih.gov/pubmed/16079339" + ], "kit": null, "file": "data/addgene_plasmids/40247.depositor-full.gb" }, @@ -55534,7 +70058,10 @@ "plasmid_name": "pCFJ889", "sequence-type": "depositor-full", "addgene_id": "84826", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.072", + "https://www.ncbi.nlm.nih.gov/pubmed/27374334" + ], "kit": null, "file": "data/addgene_plasmids/84826.depositor-full.gb" }, @@ -55543,7 +70070,10 @@ "plasmid_name": "MAC_N_GCM1", "sequence-type": "addgene-full", "addgene_id": "167759", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167759.addgene-full.gb" }, @@ -55552,7 +70082,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-S32-KD", "sequence-type": "addgene-full", "addgene_id": "140298", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140298.addgene-full.gb" }, @@ -55561,7 +70094,10 @@ "plasmid_name": "MAC_C_FLT1", "sequence-type": "addgene-full", "addgene_id": "187784", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187784.addgene-full.gb" }, @@ -55570,7 +70106,6 @@ "plasmid_name": "R777-E122 Hs.MAP2K1-nostop", "sequence-type": "depositor-full", "addgene_id": "70406", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -55582,7 +70117,10 @@ "plasmid_name": "pCFJ2245 - [1-2] ENTR - Fluor - ce-tagBFP2 (1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159843", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159843.addgene-full.gb" }, @@ -55591,7 +70129,10 @@ "plasmid_name": "pMuLE ENTR CMV tdTomato R4-R3", "sequence-type": "depositor-full", "addgene_id": "62151", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62151.depositor-full.gb" }, @@ -55600,7 +70141,10 @@ "plasmid_name": "pDONR223_SRC_WT", "sequence-type": "addgene-full", "addgene_id": "82165", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82165.addgene-full.gb" }, @@ -55609,7 +70153,10 @@ "plasmid_name": "pFUW-VenusFlag-hCD44", "sequence-type": "addgene-full", "addgene_id": "211824", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2023.105382", + "https://www.ncbi.nlm.nih.gov/pubmed/37866628" + ], "kit": null, "file": "data/addgene_plasmids/211824.addgene-full.gb" }, @@ -55618,7 +70165,10 @@ "plasmid_name": "pAAVss-U6-sgHTT51-7sk-Cas9", "sequence-type": "addgene-full", "addgene_id": "190901", - "references": [], + "references": [ + "https://doi.org/10.1016/j.omtm.2023.03.013", + "https://www.ncbi.nlm.nih.gov/pubmed/37090478" + ], "kit": null, "file": "data/addgene_plasmids/190901.addgene-full.gb" }, @@ -55627,7 +70177,10 @@ "plasmid_name": "Flag-HA-OTUD5", "sequence-type": "addgene-full", "addgene_id": "22610", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22610.addgene-full.gb" }, @@ -55636,7 +70189,10 @@ "plasmid_name": "pHAGE-PIK3R1-L372_R373delLR", "sequence-type": "addgene-full", "addgene_id": "116598", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116598.addgene-full.gb" }, @@ -55645,7 +70201,10 @@ "plasmid_name": "pDONR221_SLC9A1", "sequence-type": "addgene-full", "addgene_id": "132210", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132210.addgene-full.gb" }, @@ -55654,7 +70213,10 @@ "plasmid_name": "pBullet-vac-n", "sequence-type": "depositor-full", "addgene_id": "53075", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53075.depositor-full.gb" }, @@ -55663,7 +70225,10 @@ "plasmid_name": "pENTR D-TOPO-C3_25", "sequence-type": "addgene-full", "addgene_id": "60268", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60268.addgene-full.gb" }, @@ -55672,7 +70237,10 @@ "plasmid_name": "Zed_vector_tol2_-2.1prox1a_1:EGFP_XCA:DsRed2", "sequence-type": "addgene-full", "addgene_id": "218207", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.202525", + "https://www.ncbi.nlm.nih.gov/pubmed/38722096" + ], "kit": null, "file": "data/addgene_plasmids/218207.addgene-full.gb" }, @@ -55681,7 +70249,10 @@ "plasmid_name": "pCM5.33", "sequence-type": "depositor-full", "addgene_id": "19396", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19396.depositor-full.gb" }, @@ -55690,7 +70261,10 @@ "plasmid_name": "pSCR-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209366", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209366.addgene-full.gb" }, @@ -55699,7 +70273,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MAFG", "sequence-type": "addgene-full", "addgene_id": "207817", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207817.addgene-full.gb" }, @@ -55708,7 +70285,10 @@ "plasmid_name": "piggyBac_rtTA (4th_Gen)_SNCA-Avi_IRES_NGN2-2A-PURO_Synapsin-BirA (pEHA1628)", "sequence-type": "addgene-full", "addgene_id": "209086", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/35688132" + ], "kit": null, "file": "data/addgene_plasmids/209086.addgene-full.gb" }, @@ -55717,7 +70297,10 @@ "plasmid_name": "pDONR223-TNNI3K", "sequence-type": "addgene-full", "addgene_id": "23469", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -55729,7 +70312,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3A G120", "sequence-type": "addgene-full", "addgene_id": "123091", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123091.addgene-full.gb" }, @@ -55738,7 +70324,10 @@ "plasmid_name": "pHAGE-SIRPB1-G290E", "sequence-type": "addgene-full", "addgene_id": "116678", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116678.addgene-full.gb" }, @@ -55747,7 +70336,10 @@ "plasmid_name": "pENTR.CMV", "sequence-type": "depositor-full", "addgene_id": "32688", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "file": "data/addgene_plasmids/32688.depositor-full.gb" }, @@ -55756,7 +70348,10 @@ "plasmid_name": "pDONR221-ZNF251", "sequence-type": "depositor-full", "addgene_id": "101451", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101451.depositor-full.gb" }, @@ -55765,7 +70360,10 @@ "plasmid_name": "pShuttle.CC9", "sequence-type": "addgene-full", "addgene_id": "192931", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "file": "data/addgene_plasmids/192931.addgene-full.gb" }, @@ -55774,7 +70372,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV E", "sequence-type": "addgene-full", "addgene_id": "145361", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145361.addgene-full.gb" }, @@ -55783,7 +70384,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TLK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170588", - "references": [], "kit": null, "file": "data/addgene_plasmids/170588.addgene-full.gb" }, @@ -55792,7 +70392,6 @@ "plasmid_name": "Hs.KRAS4b Y40F", "sequence-type": "depositor-full", "addgene_id": "83161", - "references": [], "kit": null, "file": "data/addgene_plasmids/83161.depositor-full.gb" }, @@ -55801,7 +70400,10 @@ "plasmid_name": "pDONR223_TBK1_WT", "sequence-type": "addgene-full", "addgene_id": "82285", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82285.addgene-full.gb" }, @@ -55810,7 +70412,10 @@ "plasmid_name": "DR5rev::erRFP", "sequence-type": "addgene-full", "addgene_id": "61011", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.109.072553", + "https://www.ncbi.nlm.nih.gov/pubmed/20363771" + ], "kit": null, "file": "data/addgene_plasmids/61011.addgene-full.gb" }, @@ -55819,7 +70424,10 @@ "plasmid_name": "C234-E25: attB2r-SNAP-attB3", "sequence-type": "addgene-full", "addgene_id": "162914", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -55831,7 +70439,10 @@ "plasmid_name": "pCMB-ACTLr", "sequence-type": "depositor-full", "addgene_id": "61194", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61194.depositor-full.gb" }, @@ -55840,7 +70451,10 @@ "plasmid_name": "R989-X31-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) Q61L", "sequence-type": "addgene-full", "addgene_id": "159558", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159558.addgene-full.gb" }, @@ -55849,7 +70463,6 @@ "plasmid_name": "pTwist-ENTR-ENST00000429621.1", "sequence-type": "addgene-full", "addgene_id": "192751", - "references": [], "kit": null, "file": "data/addgene_plasmids/192751.addgene-full.gb" }, @@ -55858,7 +70471,10 @@ "plasmid_name": "HA-GFP1-10-pDEST-C", "sequence-type": "addgene-full", "addgene_id": "118369", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118369.addgene-full.gb" }, @@ -55867,7 +70483,10 @@ "plasmid_name": "SF3B3-1", "sequence-type": "addgene-full", "addgene_id": "156004", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156004.addgene-full.gb" }, @@ -55876,7 +70495,10 @@ "plasmid_name": "pHAGE-FGFR3__TACC3", "sequence-type": "addgene-full", "addgene_id": "116818", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116818.addgene-full.gb" }, @@ -55885,7 +70507,6 @@ "plasmid_name": "R777-E164 Hs.PIK3CA-nostop", "sequence-type": "depositor-full", "addgene_id": "70448", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -55897,7 +70518,10 @@ "plasmid_name": "pDONR221_SLC22A3", "sequence-type": "addgene-full", "addgene_id": "132024", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms23031203", + "https://www.ncbi.nlm.nih.gov/pubmed/35163125" + ], "kit": null, "file": "data/addgene_plasmids/132024.addgene-full.gb" }, @@ -55906,7 +70530,10 @@ "plasmid_name": "pHAGE-ESR1", "sequence-type": "addgene-full", "addgene_id": "116737", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116737.addgene-full.gb" }, @@ -55915,7 +70542,10 @@ "plasmid_name": "pAD-CMV-STAT5A-DNL-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83253", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "file": "data/addgene_plasmids/83253.addgene-full.gb" }, @@ -55924,7 +70554,10 @@ "plasmid_name": "MAC_C_EZRI", "sequence-type": "addgene-full", "addgene_id": "111665", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111665.addgene-full.gb" }, @@ -55933,7 +70566,10 @@ "plasmid_name": "p35S-hmKO1", "sequence-type": "addgene-full", "addgene_id": "182732", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182732.addgene-full.gb" }, @@ -55942,7 +70578,10 @@ "plasmid_name": "D. vulgaris Cas8c/pHMGWA", "sequence-type": "addgene-full", "addgene_id": "81183", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2016.07.027", + "https://www.ncbi.nlm.nih.gov/pubmed/27588603" + ], "kit": null, "file": "data/addgene_plasmids/81183.addgene-full.gb" }, @@ -55951,7 +70590,10 @@ "plasmid_name": "pDONR223_B2M_p.A6V", "sequence-type": "addgene-full", "addgene_id": "81263", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -55963,7 +70605,6 @@ "plasmid_name": "IDG_CACNA2D4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161646", - "references": [], "kit": null, "file": "data/addgene_plasmids/161646.addgene-full.gb" }, @@ -55972,7 +70613,9 @@ "plasmid_name": "pMpGWB107", "sequence-type": "depositor-full", "addgene_id": "68561", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68561.depositor-full.gb" }, @@ -55981,7 +70624,6 @@ "plasmid_name": "pDEST-PB-R4R3", "sequence-type": "addgene-full", "addgene_id": "139518", - "references": [], "kit": null, "file": "data/addgene_plasmids/139518.addgene-full.gb" }, @@ -55990,7 +70632,10 @@ "plasmid_name": "T5-sgRNA", "sequence-type": "addgene-full", "addgene_id": "113655", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.8b00426", + "https://www.ncbi.nlm.nih.gov/pubmed/30703321" + ], "kit": null, "file": "data/addgene_plasmids/113655.addgene-full.gb" }, @@ -55999,7 +70644,10 @@ "plasmid_name": "pMx/ATP8B4-HA", "sequence-type": "addgene-full", "addgene_id": "209229", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209229.addgene-full.gb" }, @@ -56008,7 +70656,10 @@ "plasmid_name": "pcDNA3_DRD1-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194358", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194358.addgene-full.gb" }, @@ -56017,7 +70668,9 @@ "plasmid_name": "p3E-nlsGFP no-pA", "sequence-type": "depositor-full", "addgene_id": "80815", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80815.depositor-full.gb" }, @@ -56026,7 +70679,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep97", "sequence-type": "addgene-full", "addgene_id": "136849", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136849.addgene-full.gb" }, @@ -56035,7 +70691,10 @@ "plasmid_name": "pDEST-APIC-Cas9", "sequence-type": "addgene-full", "addgene_id": "121657", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301736", + "https://www.ncbi.nlm.nih.gov/pubmed/30504366" + ], "kit": null, "file": "data/addgene_plasmids/121657.addgene-full.gb" }, @@ -56044,7 +70703,10 @@ "plasmid_name": "pDONR223_KEAP1_p.W497L", "sequence-type": "addgene-full", "addgene_id": "82793", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82793.addgene-full.gb" }, @@ -56053,7 +70715,10 @@ "plasmid_name": "pDONR223_EGFR_p.H1129Y", "sequence-type": "addgene-full", "addgene_id": "82827", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82827.addgene-full.gb" }, @@ -56062,7 +70727,10 @@ "plasmid_name": "pENTR-D-kcnj10a", "sequence-type": "addgene-full", "addgene_id": "173137", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173137.addgene-full.gb" }, @@ -56071,7 +70739,10 @@ "plasmid_name": "MAP2K3_pLX307", "sequence-type": "addgene-full", "addgene_id": "98355", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98355.addgene-full.gb" }, @@ -56080,7 +70751,10 @@ "plasmid_name": "pLenti_EF1a_Flag_TP53_WT", "sequence-type": "addgene-full", "addgene_id": "183112", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "file": "data/addgene_plasmids/183112.addgene-full.gb" }, @@ -56089,7 +70763,6 @@ "plasmid_name": "pDEST-Spe4-RfA-mEos4b-stop", "sequence-type": "addgene-full", "addgene_id": "186390", - "references": [], "kit": null, "file": "data/addgene_plasmids/186390.addgene-full.gb" }, @@ -56098,7 +70771,10 @@ "plasmid_name": "pEXP1/Joseph2-Multitagged Plasmid", "sequence-type": "addgene-full", "addgene_id": "226724", - "references": [], + "references": [ + "https://doi.org/10.1080/07366205.2024.2343609", + "https://www.ncbi.nlm.nih.gov/pubmed/39185782" + ], "kit": null, "file": "data/addgene_plasmids/226724.addgene-full.gb" }, @@ -56107,7 +70783,10 @@ "plasmid_name": "TFORF3019", "sequence-type": "addgene-full", "addgene_id": "144495", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144495.addgene-full.gb" }, @@ -56116,7 +70795,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf9b", "sequence-type": "addgene-full", "addgene_id": "158378", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158378.addgene-full.gb" }, @@ -56125,7 +70807,10 @@ "plasmid_name": "pDONR223_HTR4_WT", "sequence-type": "addgene-full", "addgene_id": "81915", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -56137,7 +70822,10 @@ "plasmid_name": "5'-3xFLAG Kdm1a-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212054", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212054.addgene-full.gb" }, @@ -56146,7 +70834,10 @@ "plasmid_name": "pDONR221-SLC38A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161284", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161284.addgene-full.gb" }, @@ -56155,7 +70846,9 @@ "plasmid_name": "pMpGWB322", "sequence-type": "depositor-full", "addgene_id": "68650", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68650.depositor-full.gb" }, @@ -56164,7 +70857,10 @@ "plasmid_name": "pDONR223_GEN1_p.L235R", "sequence-type": "addgene-full", "addgene_id": "81541", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -56176,7 +70872,10 @@ "plasmid_name": "pDONR221-SLC1A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161164", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161164.addgene-full.gb" }, @@ -56185,7 +70884,6 @@ "plasmid_name": "R777-E300 Hs.RPS6KB2-nostop", "sequence-type": "depositor-full", "addgene_id": "70584", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -56197,7 +70895,10 @@ "plasmid_name": "pDO23A", "sequence-type": "depositor-full", "addgene_id": "27367", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "file": "data/addgene_plasmids/27367.depositor-full.gb" }, @@ -56206,7 +70907,10 @@ "plasmid_name": "pAG413GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14237", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -56218,7 +70922,10 @@ "plasmid_name": "actc1b-mKate2-rab5c", "sequence-type": "addgene-full", "addgene_id": "109651", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109651.addgene-full.gb" }, @@ -56227,7 +70934,10 @@ "plasmid_name": "TFORF3299", "sequence-type": "addgene-full", "addgene_id": "144775", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144775.addgene-full.gb" }, @@ -56236,7 +70946,10 @@ "plasmid_name": "pEN_TT NPIPB11-FLAG", "sequence-type": "addgene-full", "addgene_id": "192308", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192308.addgene-full.gb" }, @@ -56245,7 +70958,10 @@ "plasmid_name": "pDONR221_SLC25A24", "sequence-type": "addgene-full", "addgene_id": "131980", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131980.addgene-full.gb" }, @@ -56254,7 +70970,10 @@ "plasmid_name": "pDONR221-SLC6A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161350", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161350.addgene-full.gb" }, @@ -56263,7 +70982,9 @@ "plasmid_name": "pME iCre-I (JDW 1203)", "sequence-type": "addgene-full", "addgene_id": "224520", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224520.addgene-full.gb" }, @@ -56272,7 +70993,6 @@ "plasmid_name": "pJH123", "sequence-type": "depositor-full", "addgene_id": "68379", - "references": [], "kit": null, "file": "data/addgene_plasmids/68379.depositor-full.gb" }, @@ -56281,7 +71001,10 @@ "plasmid_name": "pMMK ENTR 4", "sequence-type": "addgene-full", "addgene_id": "206263", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206263.addgene-full.gb" }, @@ -56290,7 +71013,10 @@ "plasmid_name": "pENTR-R4R3-2xmEGFP-C", "sequence-type": "depositor-full", "addgene_id": "113750", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -56314,7 +71040,10 @@ "plasmid_name": "pDONR223_WNT2_WT", "sequence-type": "addgene-full", "addgene_id": "81775", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -56326,7 +71055,10 @@ "plasmid_name": "TFORF3065", "sequence-type": "addgene-full", "addgene_id": "144541", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144541.addgene-full.gb" }, @@ -56335,7 +71067,9 @@ "plasmid_name": "pDONR221-RAB10", "sequence-type": "addgene-full", "addgene_id": "166202", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166202.addgene-full.gb" }, @@ -56344,7 +71078,10 @@ "plasmid_name": "AAEL008292 DH44R", "sequence-type": "addgene-full", "addgene_id": "115388", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115388.addgene-full.gb" }, @@ -56353,7 +71090,10 @@ "plasmid_name": "pHAGE-CDKN2A-H123Q", "sequence-type": "addgene-full", "addgene_id": "116221", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116221.addgene-full.gb" }, @@ -56362,7 +71102,10 @@ "plasmid_name": "TFORF3439", "sequence-type": "addgene-full", "addgene_id": "144915", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144915.addgene-full.gb" }, @@ -56371,7 +71114,10 @@ "plasmid_name": "pDONR223-ZNF22", "sequence-type": "addgene-full", "addgene_id": "88102", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88102.addgene-full.gb" }, @@ -56380,7 +71126,10 @@ "plasmid_name": "SP-dCas9-VPR", "sequence-type": "addgene-full", "addgene_id": "63798", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3312", + "https://www.ncbi.nlm.nih.gov/pubmed/25730490" + ], "kit": null, "file": "data/addgene_plasmids/63798.addgene-full.gb" }, @@ -56389,7 +71138,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP12_nostop", "sequence-type": "addgene-full", "addgene_id": "168527", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168527.addgene-full.gb" }, @@ -56398,7 +71150,10 @@ "plasmid_name": "p5E--3mnx1", "sequence-type": "addgene-full", "addgene_id": "74632", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -56410,7 +71165,10 @@ "plasmid_name": "KO801: pMVP (L5-L4) Hygro-P2A", "sequence-type": "addgene-full", "addgene_id": "121718", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121718.addgene-full.gb" }, @@ -56419,7 +71177,10 @@ "plasmid_name": "pIRIGF-IKZF3", "sequence-type": "addgene-full", "addgene_id": "69046", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/69046.addgene-full.gb" }, @@ -56428,7 +71189,10 @@ "plasmid_name": "pDONR223_FAM200A_p.S481N", "sequence-type": "addgene-full", "addgene_id": "81495", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -56440,7 +71204,10 @@ "plasmid_name": "pDONR223_RBM45_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82968", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82968.addgene-full.gb" }, @@ -56449,7 +71216,10 @@ "plasmid_name": "KZ601: pMVP (L3-L2) P2A-Zeo + polyA", "sequence-type": "addgene-full", "addgene_id": "121783", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121783.addgene-full.gb" }, @@ -56458,7 +71228,10 @@ "plasmid_name": "KL101: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS-KRAB", "sequence-type": "addgene-full", "addgene_id": "121837", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121837.addgene-full.gb" }, @@ -56467,7 +71240,9 @@ "plasmid_name": "pPB-cT3G-cERP2-PRDM1", "sequence-type": "addgene-full", "addgene_id": "222924", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "file": "data/addgene_plasmids/222924.addgene-full.gb" }, @@ -56476,7 +71251,9 @@ "plasmid_name": "pDONR221-HNRNPA1L2", "sequence-type": "addgene-full", "addgene_id": "166179", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166179.addgene-full.gb" }, @@ -56485,7 +71262,6 @@ "plasmid_name": "Mouse-Dysferlin-Transcript-Variant1", "sequence-type": "depositor-full", "addgene_id": "60214", - "references": [], "kit": null, "file": "data/addgene_plasmids/60214.depositor-full.gb" }, @@ -56494,7 +71270,10 @@ "plasmid_name": "sox10:mCherry", "sequence-type": "depositor-full", "addgene_id": "98695", - "references": [], + "references": [ + "https://doi.org/10.1038/onc.2016.269", + "https://www.ncbi.nlm.nih.gov/pubmed/27477693" + ], "kit": null, "file": "data/addgene_plasmids/98695.depositor-full.gb" }, @@ -56503,7 +71282,10 @@ "plasmid_name": "RCH1:GA2ox2-GFP", "sequence-type": "addgene-full", "addgene_id": "108567", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "file": "data/addgene_plasmids/108567.addgene-full.gb" }, @@ -56512,7 +71294,10 @@ "plasmid_name": "pAG304GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14279", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -56524,7 +71309,9 @@ "plasmid_name": "pPB-cT3G-cERP2-RARG", "sequence-type": "addgene-full", "addgene_id": "222570", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222570.addgene-full.gb" }, @@ -56533,7 +71320,10 @@ "plasmid_name": "pDONR221-kcnk5b", "sequence-type": "addgene-full", "addgene_id": "208989", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208989.addgene-full.gb" }, @@ -56542,7 +71332,10 @@ "plasmid_name": "pDONR221_SLC16A14", "sequence-type": "addgene-full", "addgene_id": "131926", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131926.addgene-full.gb" }, @@ -56551,7 +71344,6 @@ "plasmid_name": "plix403-V5-N-mECFP", "sequence-type": "addgene-full", "addgene_id": "223954", - "references": [], "kit": null, "file": "data/addgene_plasmids/223954.addgene-full.gb" }, @@ -56560,7 +71352,6 @@ "plasmid_name": "pLenti6.3/NS5-YFP", "sequence-type": "addgene-full", "addgene_id": "120847", - "references": [], "kit": null, "file": "data/addgene_plasmids/120847.addgene-full.gb" }, @@ -56569,7 +71360,10 @@ "plasmid_name": "TFORF3391", "sequence-type": "addgene-full", "addgene_id": "144867", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144867.addgene-full.gb" }, @@ -56578,7 +71372,10 @@ "plasmid_name": "pDONR223-ZNF451", "sequence-type": "addgene-full", "addgene_id": "88070", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88070.addgene-full.gb" }, @@ -56587,7 +71384,10 @@ "plasmid_name": "pcDNA3_SP-DRD2-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194365", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194365.addgene-full.gb" }, @@ -56596,7 +71396,10 @@ "plasmid_name": "pUC-AdEvolve-DEST", "sequence-type": "addgene-full", "addgene_id": "131692", - "references": [], + "references": [ + "https://doi.org/10.1021/jacs.8b10937", + "https://www.ncbi.nlm.nih.gov/pubmed/30427676" + ], "kit": null, "file": "data/addgene_plasmids/131692.addgene-full.gb" }, @@ -56605,7 +71408,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep152", "sequence-type": "addgene-full", "addgene_id": "136874", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136874.addgene-full.gb" }, @@ -56614,7 +71420,10 @@ "plasmid_name": "pLDPuro-MmnSR100N", "sequence-type": "addgene-full", "addgene_id": "35171", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2011.08.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21884984" + ], "kit": null, "file": "data/addgene_plasmids/35171.addgene-full.gb" }, @@ -56623,7 +71432,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir16-1 wt", "sequence-type": "depositor-full", "addgene_id": "46683", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46683.depositor-full.gb" }, @@ -56632,7 +71444,10 @@ "plasmid_name": "pDONR223-ZNF3_isoform1", "sequence-type": "addgene-full", "addgene_id": "87978", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/87978.addgene-full.gb" }, @@ -56641,7 +71456,10 @@ "plasmid_name": "pDONR223_DNMT3A_p.A910V", "sequence-type": "addgene-full", "addgene_id": "81607", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -56653,7 +71471,10 @@ "plasmid_name": "RNF138_pLX307", "sequence-type": "addgene-full", "addgene_id": "98368", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98368.addgene-full.gb" }, @@ -56662,7 +71483,10 @@ "plasmid_name": "pDONR221-SLC26A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161222", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161222.addgene-full.gb" }, @@ -56671,7 +71495,10 @@ "plasmid_name": "pKM839", "sequence-type": "depositor-full", "addgene_id": "8838", - "references": [], + "references": [ + "https://doi.org/10.1016/S0014-5793%2803%2900070-X", + "https://www.ncbi.nlm.nih.gov/pubmed/12606030" + ], "kit": null, "file": "data/addgene_plasmids/8838.depositor-full.gb" }, @@ -56680,7 +71507,10 @@ "plasmid_name": "pEZY19", "sequence-type": "depositor-full", "addgene_id": "18668", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18668.depositor-full.gb" }, @@ -56689,7 +71519,10 @@ "plasmid_name": "TFORF2957", "sequence-type": "addgene-full", "addgene_id": "144433", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144433.addgene-full.gb" }, @@ -56698,7 +71531,10 @@ "plasmid_name": "actc1b-mKate2-EHD2b", "sequence-type": "addgene-full", "addgene_id": "109517", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109517.addgene-full.gb" }, @@ -56707,7 +71543,10 @@ "plasmid_name": "CPL2g/pDONR221", "sequence-type": "addgene-full", "addgene_id": "172093", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.00722", + "https://www.ncbi.nlm.nih.gov/pubmed/31484679" + ], "kit": null, "file": "data/addgene_plasmids/172093.addgene-full.gb" }, @@ -56716,7 +71555,10 @@ "plasmid_name": "5'-3xFLAG Msl1+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212069", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212069.addgene-full.gb" }, @@ -56725,7 +71567,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.E545K", "sequence-type": "addgene-full", "addgene_id": "82881", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82881.addgene-full.gb" }, @@ -56734,7 +71579,6 @@ "plasmid_name": "R777-E176 Hs.PIK3R3-nostop", "sequence-type": "depositor-full", "addgene_id": "70460", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -56746,7 +71590,10 @@ "plasmid_name": "pDONR223_SERPINB5_p.D141A", "sequence-type": "addgene-full", "addgene_id": "82735", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -56758,7 +71605,6 @@ "plasmid_name": "pUC-L1L4", "sequence-type": "addgene-full", "addgene_id": "114018", - "references": [], "kit": null, "file": "data/addgene_plasmids/114018.addgene-full.gb" }, @@ -56767,7 +71613,10 @@ "plasmid_name": "pMuLE ENTR U6 n.s shRNA R4-R3", "sequence-type": "depositor-full", "addgene_id": "62137", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62137.depositor-full.gb" }, @@ -56776,7 +71625,10 @@ "plasmid_name": "TFORF3272", "sequence-type": "addgene-full", "addgene_id": "144748", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144748.addgene-full.gb" }, @@ -56785,7 +71637,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF7B C-trunc_nostop", "sequence-type": "addgene-full", "addgene_id": "153956", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153956.addgene-full.gb" }, @@ -56794,7 +71649,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-mCBP80 zeo", "sequence-type": "addgene-full", "addgene_id": "192335", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192335.addgene-full.gb" }, @@ -56803,7 +71661,10 @@ "plasmid_name": "pENTR223-PARK7E163K", "sequence-type": "addgene-full", "addgene_id": "115181", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115181.addgene-full.gb" }, @@ -56812,7 +71673,10 @@ "plasmid_name": "pENTR-R4r-EGFP-R3r", "sequence-type": "depositor-full", "addgene_id": "32413", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32413.depositor-full.gb" }, @@ -56821,7 +71685,10 @@ "plasmid_name": "pDONR223_PIK3R1_WT", "sequence-type": "addgene-full", "addgene_id": "81748", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -56833,7 +71700,10 @@ "plasmid_name": "pFRT_TO_FlagHA_ELAVL1", "sequence-type": "addgene-full", "addgene_id": "106104", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106104.addgene-full.gb" }, @@ -56842,7 +71712,10 @@ "plasmid_name": "pEN-R2-mCsfGFP-L3", "sequence-type": "addgene-full", "addgene_id": "178602", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.00051", + "https://www.ncbi.nlm.nih.gov/pubmed/30872425" + ], "kit": null, "file": "data/addgene_plasmids/178602.addgene-full.gb" }, @@ -56851,7 +71724,6 @@ "plasmid_name": "WT-long-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "192101", - "references": [], "kit": null, "file": "data/addgene_plasmids/192101.addgene-full.gb" }, @@ -56860,7 +71732,10 @@ "plasmid_name": "pMM2_11", "sequence-type": "addgene-full", "addgene_id": "183060", - "references": [], + "references": [ + "https://doi.org/10.1093/femsyr/foab049", + "https://www.ncbi.nlm.nih.gov/pubmed/34477863" + ], "kit": null, "file": "data/addgene_plasmids/183060.addgene-full.gb" }, @@ -56869,7 +71744,10 @@ "plasmid_name": "pDONR221_MFSD14A", "sequence-type": "addgene-full", "addgene_id": "131869", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131869.addgene-full.gb" }, @@ -56878,7 +71756,10 @@ "plasmid_name": "pCZGY1026 COX8aN::miniSOG in pENTR[1-2]", "sequence-type": "depositor-full", "addgene_id": "66752", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1204096109", + "https://www.ncbi.nlm.nih.gov/pubmed/22532663" + ], "kit": null, "file": "data/addgene_plasmids/66752.depositor-full.gb" }, @@ -56887,7 +71768,6 @@ "plasmid_name": "Hs.KRAS4b G12F", "sequence-type": "depositor-full", "addgene_id": "83149", - "references": [], "kit": null, "file": "data/addgene_plasmids/83149.depositor-full.gb" }, @@ -56896,7 +71776,10 @@ "plasmid_name": "pAG304GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14160", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -56908,7 +71791,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK10_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158171", - "references": [], "kit": null, "file": "data/addgene_plasmids/158171.addgene-full.gb" }, @@ -56917,7 +71799,10 @@ "plasmid_name": "pCONR221", "sequence-type": "addgene-full", "addgene_id": "216146", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216146.addgene-full.gb" }, @@ -56926,7 +71811,10 @@ "plasmid_name": "TFORF3452", "sequence-type": "addgene-full", "addgene_id": "144928", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144928.addgene-full.gb" }, @@ -56935,7 +71823,9 @@ "plasmid_name": "nTALECD for_PKT3 exon1_1397NC", "sequence-type": "addgene-full", "addgene_id": "193378", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "file": "data/addgene_plasmids/193378.addgene-full.gb" }, @@ -56944,7 +71834,10 @@ "plasmid_name": "pQLinkHD-SYNZIP2", "sequence-type": "depositor-full", "addgene_id": "80658", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "file": "data/addgene_plasmids/80658.depositor-full.gb" }, @@ -56953,7 +71846,10 @@ "plasmid_name": "pDONR223_POLR2I_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82955", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82955.addgene-full.gb" }, @@ -56962,7 +71858,10 @@ "plasmid_name": "IF701: pMVP (L5-L4) APEX2", "sequence-type": "addgene-full", "addgene_id": "121725", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121725.addgene-full.gb" }, @@ -56971,7 +71870,10 @@ "plasmid_name": "pLV-SspB-HaloTag-TIAM1-DHPH", "sequence-type": "addgene-full", "addgene_id": "176127", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.84364", + "https://www.ncbi.nlm.nih.gov/pubmed/37449837" + ], "kit": null, "file": "data/addgene_plasmids/176127.addgene-full.gb" }, @@ -56980,7 +71882,10 @@ "plasmid_name": "ATX3-77Q", "sequence-type": "addgene-full", "addgene_id": "184249", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "file": "data/addgene_plasmids/184249.addgene-full.gb" }, @@ -56989,7 +71894,10 @@ "plasmid_name": "pAG414GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14407", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -57001,7 +71909,10 @@ "plasmid_name": "pDONR223_KRT26_p.S2C", "sequence-type": "addgene-full", "addgene_id": "81433", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -57013,7 +71924,10 @@ "plasmid_name": "pAC1809_pmax-RBM38-FRB", "sequence-type": "addgene-full", "addgene_id": "118642", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118642.addgene-full.gb" }, @@ -57022,7 +71936,10 @@ "plasmid_name": "TFORF3131", "sequence-type": "addgene-full", "addgene_id": "144607", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144607.addgene-full.gb" }, @@ -57031,7 +71948,10 @@ "plasmid_name": "pGCS-C5(GST)", "sequence-type": "addgene-full", "addgene_id": "85728", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -57043,7 +71963,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 S_nostop", "sequence-type": "addgene-full", "addgene_id": "168581", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168581.addgene-full.gb" }, @@ -57052,7 +71975,10 @@ "plasmid_name": "p3E-rab7a", "sequence-type": "addgene-full", "addgene_id": "109723", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109723.addgene-full.gb" }, @@ -57061,7 +71987,9 @@ "plasmid_name": "pAG426GAL-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166144", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166144.addgene-full.gb" }, @@ -57070,7 +71998,10 @@ "plasmid_name": "PA-RL-BAD", "sequence-type": "depositor-full", "addgene_id": "78859", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "file": "data/addgene_plasmids/78859.depositor-full.gb" }, @@ -57079,7 +72010,10 @@ "plasmid_name": "pHAGE-EGFR-P699S", "sequence-type": "addgene-full", "addgene_id": "116287", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116287.addgene-full.gb" }, @@ -57088,7 +72022,10 @@ "plasmid_name": "pHAGE-BRAF-K499N", "sequence-type": "addgene-full", "addgene_id": "116167", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116167.addgene-full.gb" }, @@ -57097,7 +72034,10 @@ "plasmid_name": "pMuLE Lenti Dest Luc2", "sequence-type": "depositor-full", "addgene_id": "62179", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62179.depositor-full.gb" }, @@ -57106,7 +72046,10 @@ "plasmid_name": "pGWB555", "sequence-type": "depositor-full", "addgene_id": "74885", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74885.depositor-full.gb" }, @@ -57115,7 +72058,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-DCLK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189891", - "references": [], "kit": null, "file": "data/addgene_plasmids/189891.addgene-full.gb" }, @@ -57124,7 +72066,6 @@ "plasmid_name": "pMK33-GW-TurboID-V5", "sequence-type": "addgene-full", "addgene_id": "196281", - "references": [], "kit": null, "file": "data/addgene_plasmids/196281.addgene-full.gb" }, @@ -57133,7 +72074,10 @@ "plasmid_name": "pHAGE-RNF8-S157A", "sequence-type": "addgene-full", "addgene_id": "221704", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-023-01192-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37468549" + ], "kit": null, "file": "data/addgene_plasmids/221704.addgene-full.gb" }, @@ -57142,7 +72086,10 @@ "plasmid_name": "p7128 pHAGE-P-CMVt-N-HA-GAW-HLA-A", "sequence-type": "addgene-full", "addgene_id": "100154", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100154.addgene-full.gb" }, @@ -57151,7 +72098,10 @@ "plasmid_name": "pDONR223_TPTE_WT", "sequence-type": "addgene-full", "addgene_id": "81867", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -57163,7 +72113,10 @@ "plasmid_name": "pCK002 pME mCerulean", "sequence-type": "addgene-full", "addgene_id": "195956", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195956.addgene-full.gb" }, @@ -57172,7 +72125,9 @@ "plasmid_name": "pFcpB-DEST", "sequence-type": "addgene-full", "addgene_id": "90098", - "references": [], + "references": [ + "https://doi.org/10.7287/peerj.preprints.2907v1" + ], "kit": null, "file": "data/addgene_plasmids/90098.addgene-full.gb" }, @@ -57181,7 +72136,10 @@ "plasmid_name": "p221z-AtMIR390a", "sequence-type": "addgene-full", "addgene_id": "118388", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "file": "data/addgene_plasmids/118388.addgene-full.gb" }, @@ -57190,7 +72148,10 @@ "plasmid_name": "pRP(Exp)-CMV> :dTomato:IRES:Puro", "sequence-type": "addgene-full", "addgene_id": "110832", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.201701465RR", + "https://www.ncbi.nlm.nih.gov/pubmed/29570397" + ], "kit": null, "file": "data/addgene_plasmids/110832.addgene-full.gb" }, @@ -57199,7 +72160,10 @@ "plasmid_name": "pDONR223-TYK2", "sequence-type": "addgene-full", "addgene_id": "23908", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -57211,7 +72175,6 @@ "plasmid_name": "PB-TET-BH-lox66FRT", "sequence-type": "addgene-full", "addgene_id": "139562", - "references": [], "kit": null, "file": "data/addgene_plasmids/139562.addgene-full.gb" }, @@ -57220,7 +72183,10 @@ "plasmid_name": "pTW063", "sequence-type": "addgene-full", "addgene_id": "115950", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115950.addgene-full.gb" }, @@ -57229,7 +72195,10 @@ "plasmid_name": "pMx/ATP8B1(E234Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209253", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209253.addgene-full.gb" }, @@ -57238,7 +72207,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-H2B-mCherry (gRNA: Neurog2-1)", "sequence-type": "addgene-full", "addgene_id": "159659", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/159659.addgene-full.gb" }, @@ -57247,7 +72219,10 @@ "plasmid_name": "HJP-194-IVS-Syn21-CreA-gp41-1N-WPREUw", "sequence-type": "addgene-full", "addgene_id": "162475", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162475.addgene-full.gb" }, @@ -57256,7 +72231,6 @@ "plasmid_name": "pHAGE-CMV-Flag-PKMYT1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135277", - "references": [], "kit": null, "file": "data/addgene_plasmids/135277.addgene-full.gb" }, @@ -57265,7 +72239,10 @@ "plasmid_name": "pDONR223_EIF1AX_p.G9R", "sequence-type": "addgene-full", "addgene_id": "81282", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -57277,7 +72254,10 @@ "plasmid_name": "pTORKm43GWF", "sequence-type": "addgene-full", "addgene_id": "112899", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01516-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31575765" + ], "kit": null, "file": "data/addgene_plasmids/112899.addgene-full.gb" }, @@ -57286,7 +72266,10 @@ "plasmid_name": "MAC-DPP4", "sequence-type": "addgene-full", "addgene_id": "172416", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172416.addgene-full.gb" }, @@ -57295,7 +72278,10 @@ "plasmid_name": "Tol2-krt4-GFP", "sequence-type": "addgene-full", "addgene_id": "97151", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "file": "data/addgene_plasmids/97151.addgene-full.gb" }, @@ -57304,7 +72290,6 @@ "plasmid_name": "EV-A71 2A protease; aliases: Enterovirus EV71 2A protease, 6xHis-SUMO-TEV tag, self cleaving", "sequence-type": "addgene-full", "addgene_id": "204810", - "references": [], "kit": null, "file": "data/addgene_plasmids/204810.addgene-full.gb" }, @@ -57313,7 +72298,10 @@ "plasmid_name": "p3E-2a-6MTnlstdTomato", "sequence-type": "depositor-full", "addgene_id": "67699", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "file": "data/addgene_plasmids/67699.depositor-full.gb" }, @@ -57322,7 +72310,10 @@ "plasmid_name": "W118-1_hSTK16-Flag", "sequence-type": "addgene-full", "addgene_id": "180403", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180403.addgene-full.gb" }, @@ -57331,7 +72322,10 @@ "plasmid_name": "MEN2B-SHC", "sequence-type": "addgene-full", "addgene_id": "139619", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139619.addgene-full.gb" }, @@ -57340,7 +72334,10 @@ "plasmid_name": "MAC_N_CDK7", "sequence-type": "addgene-full", "addgene_id": "111684", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111684.addgene-full.gb" }, @@ -57349,7 +72346,10 @@ "plasmid_name": "pDL74", "sequence-type": "addgene-full", "addgene_id": "175910", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175910.addgene-full.gb" }, @@ -57358,7 +72358,10 @@ "plasmid_name": "pDONR221 Nop2", "sequence-type": "depositor-full", "addgene_id": "63766", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63766.depositor-full.gb" }, @@ -57367,7 +72370,10 @@ "plasmid_name": "MAC_C_EphA7", "sequence-type": "addgene-full", "addgene_id": "187765", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187765.addgene-full.gb" }, @@ -57376,7 +72382,10 @@ "plasmid_name": "pDONR223_TP53_p.C176F", "sequence-type": "addgene-full", "addgene_id": "81356", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -57388,7 +72397,10 @@ "plasmid_name": "pLentiPGK DEST H2B-iRFP670", "sequence-type": "addgene-full", "addgene_id": "90237", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "file": "data/addgene_plasmids/90237.addgene-full.gb" }, @@ -57397,7 +72409,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK38L_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170612", - "references": [], "kit": null, "file": "data/addgene_plasmids/170612.addgene-full.gb" }, @@ -57406,7 +72417,10 @@ "plasmid_name": "pENTR223-BFLF1", "sequence-type": "addgene-full", "addgene_id": "195819", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195819.addgene-full.gb" }, @@ -57415,7 +72429,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 Q770A E774K", "sequence-type": "addgene-full", "addgene_id": "175770", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175770.addgene-full.gb" }, @@ -57424,7 +72441,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD4-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113480", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113480.addgene-full.gb" }, @@ -57433,7 +72453,10 @@ "plasmid_name": "GFP-ATAD2", "sequence-type": "addgene-full", "addgene_id": "65370", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65370.addgene-full.gb" }, @@ -57442,7 +72465,10 @@ "plasmid_name": "pHAGE-PIK3R1-Q455_K459delQFQEK", "sequence-type": "addgene-full", "addgene_id": "116602", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116602.addgene-full.gb" }, @@ -57451,7 +72477,10 @@ "plasmid_name": "pMET7-GAG-GW", "sequence-type": "addgene-full", "addgene_id": "194634", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms11416", + "https://www.ncbi.nlm.nih.gov/pubmed/27122307" + ], "kit": null, "file": "data/addgene_plasmids/194634.addgene-full.gb" }, @@ -57460,7 +72489,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-WWC3", "sequence-type": "addgene-full", "addgene_id": "172996", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172996.addgene-full.gb" }, @@ -57469,7 +72501,10 @@ "plasmid_name": "pDONR223-PIK3R4", "sequence-type": "addgene-full", "addgene_id": "23488", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -57481,7 +72516,10 @@ "plasmid_name": "pHAGE-TGFBR2-G43C", "sequence-type": "addgene-full", "addgene_id": "116699", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116699.addgene-full.gb" }, @@ -57490,7 +72528,10 @@ "plasmid_name": "pDONR221_SLC35A5", "sequence-type": "addgene-full", "addgene_id": "132111", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132111.addgene-full.gb" }, @@ -57499,7 +72540,10 @@ "plasmid_name": "pDONR223 LC3A G120A", "sequence-type": "addgene-full", "addgene_id": "123070", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123070.addgene-full.gb" }, @@ -57508,7 +72552,10 @@ "plasmid_name": "pDONR221-SLC6A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161408", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161408.addgene-full.gb" }, @@ -57517,7 +72564,10 @@ "plasmid_name": "Active Wnt1-V5", "sequence-type": "addgene-full", "addgene_id": "43807", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43807.addgene-full.gb" }, @@ -57526,7 +72576,10 @@ "plasmid_name": "pDONR223_CRY1_WT", "sequence-type": "addgene-full", "addgene_id": "82264", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82264.addgene-full.gb" }, @@ -57535,7 +72588,10 @@ "plasmid_name": "pcDNA3_ERBB4-NTEV-tcs-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "214613", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214613.addgene-full.gb" }, @@ -57556,7 +72612,10 @@ "plasmid_name": "pDONR223_STAT3_p.A662C_N664C", "sequence-type": "addgene-full", "addgene_id": "82184", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82184.addgene-full.gb" }, @@ -57565,7 +72624,10 @@ "plasmid_name": "pGGEV_7_Linker", "sequence-type": "depositor-full", "addgene_id": "49287", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -57577,7 +72639,9 @@ "plasmid_name": "pMpGWB415", "sequence-type": "depositor-full", "addgene_id": "68680", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68680.depositor-full.gb" }, @@ -57586,7 +72650,10 @@ "plasmid_name": "Phage-PGK-Flag-HA-FKBP-T(G177D)", "sequence-type": "addgene-full", "addgene_id": "181735", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xcrm.2020.100188", + "https://www.ncbi.nlm.nih.gov/pubmed/33521702" + ], "kit": null, "file": "data/addgene_plasmids/181735.addgene-full.gb" }, @@ -57595,7 +72662,10 @@ "plasmid_name": "tetO-HAND1", "sequence-type": "addgene-full", "addgene_id": "170689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170689.addgene-full.gb" }, @@ -57604,7 +72674,6 @@ "plasmid_name": "CTNNB1 - G752A in pENTR", "sequence-type": "addgene-full", "addgene_id": "216623", - "references": [], "kit": null, "file": "data/addgene_plasmids/216623.addgene-full.gb" }, @@ -57613,7 +72682,10 @@ "plasmid_name": "pHAGE-PIK3CG-G426E", "sequence-type": "addgene-full", "addgene_id": "116579", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116579.addgene-full.gb" }, @@ -57622,7 +72694,6 @@ "plasmid_name": "R777-E270 Hs.RASSF9-nostop", "sequence-type": "depositor-full", "addgene_id": "70554", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -57634,7 +72705,10 @@ "plasmid_name": "pHAGE-PDGFRB", "sequence-type": "addgene-full", "addgene_id": "116770", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116770.addgene-full.gb" }, @@ -57643,7 +72717,10 @@ "plasmid_name": "pDONR223-ZNF449", "sequence-type": "addgene-full", "addgene_id": "88453", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88453.addgene-full.gb" }, @@ -57652,7 +72729,6 @@ "plasmid_name": "R777-E319 Hs.SOS2", "sequence-type": "depositor-full", "addgene_id": "70603", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -57664,7 +72740,10 @@ "plasmid_name": "pDONR223-EGFR", "sequence-type": "addgene-full", "addgene_id": "23935", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -57676,7 +72755,10 @@ "plasmid_name": "pHAGE-PIK3CA-G1007R", "sequence-type": "addgene-full", "addgene_id": "116490", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116490.addgene-full.gb" }, @@ -57685,7 +72767,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-GFP (gRNA: DHS-4D-3)", "sequence-type": "addgene-full", "addgene_id": "159664", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/159664.addgene-full.gb" }, @@ -57694,7 +72779,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_K100E", "sequence-type": "depositor-full", "addgene_id": "65093", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65093.depositor-full.gb" }, @@ -57703,7 +72791,6 @@ "plasmid_name": "R777-E080 Hs.EXOC7-nostop", "sequence-type": "depositor-full", "addgene_id": "70364", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -57715,7 +72802,10 @@ "plasmid_name": "pNL(CMV)Rep78-III/CMV/WPRE\u0394U3", "sequence-type": "addgene-full", "addgene_id": "190726", - "references": [], + "references": [ + "https://doi.org/10.1089/hgtb.2018.052", + "https://www.ncbi.nlm.nih.gov/pubmed/29860898" + ], "kit": null, "file": "data/addgene_plasmids/190726.addgene-full.gb" }, @@ -57724,7 +72814,10 @@ "plasmid_name": "Tol2-lyzC-mcherry-2a-CDK2-D145N", "sequence-type": "addgene-full", "addgene_id": "121132", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1905221116", + "https://www.ncbi.nlm.nih.gov/pubmed/31451657" + ], "kit": null, "file": "data/addgene_plasmids/121132.addgene-full.gb" }, @@ -57733,7 +72826,10 @@ "plasmid_name": "pSGE_648_S2-1-Trl_dCP", "sequence-type": "depositor-full", "addgene_id": "71166", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71166.depositor-full.gb" }, @@ -57742,7 +72838,10 @@ "plasmid_name": "pDESThaw", "sequence-type": "depositor-full", "addgene_id": "32317", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32317.depositor-full.gb" }, @@ -57751,7 +72850,10 @@ "plasmid_name": "MSCV-TRE-DsRed-IRES-d24EGFP", "sequence-type": "addgene-full", "addgene_id": "41945", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1160489", + "https://www.ncbi.nlm.nih.gov/pubmed/18988847" + ], "kit": null, "file": "data/addgene_plasmids/41945.addgene-full.gb" }, @@ -57760,7 +72862,10 @@ "plasmid_name": "pGWB513", "sequence-type": "depositor-full", "addgene_id": "74855", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74855.depositor-full.gb" }, @@ -57769,7 +72874,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab8A", "sequence-type": "addgene-full", "addgene_id": "166428", - "references": [], "kit": null, "file": "data/addgene_plasmids/166428.addgene-full.gb" }, @@ -57778,7 +72882,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL1 G116", "sequence-type": "addgene-full", "addgene_id": "123102", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123102.addgene-full.gb" }, @@ -57787,7 +72894,10 @@ "plasmid_name": "pDONR221_SLC35C1", "sequence-type": "addgene-full", "addgene_id": "132063", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132063.addgene-full.gb" }, @@ -57796,7 +72906,10 @@ "plasmid_name": "GDNF-SHC", "sequence-type": "addgene-full", "addgene_id": "139624", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139624.addgene-full.gb" }, @@ -57805,7 +72918,10 @@ "plasmid_name": "pZA8", "sequence-type": "addgene-full", "addgene_id": "158486", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158486.addgene-full.gb" }, @@ -57814,7 +72930,6 @@ "plasmid_name": "pDONR221-si:ch73-281n10.2", "sequence-type": "addgene-full", "addgene_id": "192716", - "references": [], "kit": null, "file": "data/addgene_plasmids/192716.addgene-full.gb" }, @@ -57823,7 +72938,10 @@ "plasmid_name": "pEX-CMV-SP-YFP-STM2(15-746)", "sequence-type": "addgene-full", "addgene_id": "18862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "file": "data/addgene_plasmids/18862.addgene-full.gb" }, @@ -57832,7 +72950,10 @@ "plasmid_name": "ATX3 13Q- I77K Q78K W87K", "sequence-type": "addgene-full", "addgene_id": "185908", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "file": "data/addgene_plasmids/185908.addgene-full.gb" }, @@ -57841,7 +72962,6 @@ "plasmid_name": "p35S::ARA6/RabF1-YFPc", "sequence-type": "addgene-full", "addgene_id": "102408", - "references": [], "kit": null, "file": "data/addgene_plasmids/102408.addgene-full.gb" }, @@ -57850,7 +72970,10 @@ "plasmid_name": "PB-TAC-ERN", "sequence-type": "depositor-full", "addgene_id": "80475", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "file": "data/addgene_plasmids/80475.depositor-full.gb" }, @@ -57859,7 +72982,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Bh", "sequence-type": "addgene-full", "addgene_id": "136378", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136378.addgene-full.gb" }, @@ -57868,7 +72994,10 @@ "plasmid_name": "pLV-PLXNB2-dVTDL", "sequence-type": "addgene-full", "addgene_id": "86239", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "file": "data/addgene_plasmids/86239.addgene-full.gb" }, @@ -57877,7 +73006,10 @@ "plasmid_name": "pLipoP1-NLS-3xmCitrine", "sequence-type": "addgene-full", "addgene_id": "192522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.112676", + "https://www.ncbi.nlm.nih.gov/pubmed/37342910" + ], "kit": null, "file": "data/addgene_plasmids/192522.addgene-full.gb" }, @@ -57886,7 +73018,10 @@ "plasmid_name": "pDONR221_SV2A", "sequence-type": "addgene-full", "addgene_id": "132257", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132257.addgene-full.gb" }, @@ -57895,7 +73030,10 @@ "plasmid_name": "FAM207A_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176950", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176950.addgene-full.gb" }, @@ -57904,7 +73042,10 @@ "plasmid_name": "pFRT-TODestGFP_RBPMS2", "sequence-type": "depositor-full", "addgene_id": "65747", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.045005.114", + "https://www.ncbi.nlm.nih.gov/pubmed/24860013" + ], "kit": null, "file": "data/addgene_plasmids/65747.depositor-full.gb" }, @@ -57913,7 +73054,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-40", "sequence-type": "depositor-full", "addgene_id": "46653", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46653.depositor-full.gb" }, @@ -57922,7 +73066,10 @@ "plasmid_name": "pDEST/LIfeAct-mCherry-N1", "sequence-type": "addgene-full", "addgene_id": "40908", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.111.257964", + "https://www.ncbi.nlm.nih.gov/pubmed/22328533" + ], "kit": null, "file": "data/addgene_plasmids/40908.addgene-full.gb" }, @@ -57931,7 +73078,10 @@ "plasmid_name": "MAC_N_NKX25", "sequence-type": "addgene-full", "addgene_id": "167785", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167785.addgene-full.gb" }, @@ -57940,7 +73090,10 @@ "plasmid_name": "pDONR223_FURIN_WT", "sequence-type": "addgene-full", "addgene_id": "82122", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82122.addgene-full.gb" }, @@ -57949,7 +73102,6 @@ "plasmid_name": "g13s pD42", "sequence-type": "addgene-full", "addgene_id": "117446", - "references": [], "kit": null, "file": "data/addgene_plasmids/117446.addgene-full.gb" }, @@ -57958,7 +73110,10 @@ "plasmid_name": "pLgw EcoDam-V5-ELK1", "sequence-type": "addgene-full", "addgene_id": "98604", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98604.addgene-full.gb" }, @@ -57967,7 +73122,9 @@ "plasmid_name": "pJPF0117", "sequence-type": "addgene-full", "addgene_id": "130267", - "references": [], + "references": [ + "https://doi.org/10.1101/747030" + ], "kit": null, "file": "data/addgene_plasmids/130267.addgene-full.gb" }, @@ -57976,7 +73133,10 @@ "plasmid_name": "pENTR223-BKRF3", "sequence-type": "addgene-full", "addgene_id": "195790", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195790.addgene-full.gb" }, @@ -57985,7 +73145,10 @@ "plasmid_name": "C514-E11: attB5r-RU5u-His6-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162953", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -57997,7 +73160,10 @@ "plasmid_name": "pENTR223-BRLF1(Rta)", "sequence-type": "addgene-full", "addgene_id": "195824", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195824.addgene-full.gb" }, @@ -58006,7 +73172,10 @@ "plasmid_name": "pDEST40-CES2A-\u0394C-S227A", "sequence-type": "addgene-full", "addgene_id": "200556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2023.04.011", + "https://www.ncbi.nlm.nih.gov/pubmed/37141889" + ], "kit": null, "file": "data/addgene_plasmids/200556.addgene-full.gb" }, @@ -58015,7 +73184,6 @@ "plasmid_name": "pLIX403-EBFP2-ccdB-Puro", "sequence-type": "addgene-full", "addgene_id": "158552", - "references": [], "kit": null, "file": "data/addgene_plasmids/158552.addgene-full.gb" }, @@ -58024,7 +73192,9 @@ "plasmid_name": "pMpGWB208", "sequence-type": "depositor-full", "addgene_id": "68599", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68599.depositor-full.gb" }, @@ -58033,7 +73203,10 @@ "plasmid_name": "pME-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "166567", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "file": "data/addgene_plasmids/166567.addgene-full.gb" }, @@ -58042,7 +73215,10 @@ "plasmid_name": "pEAHISPSVORF137", "sequence-type": "addgene-full", "addgene_id": "97023", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97023.addgene-full.gb" }, @@ -58051,7 +73227,10 @@ "plasmid_name": "pBH-UAS-secA5-YFP", "sequence-type": "depositor-full", "addgene_id": "32359", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.10-161018", + "https://www.ncbi.nlm.nih.gov/pubmed/20601526" + ], "kit": null, "file": "data/addgene_plasmids/32359.depositor-full.gb" }, @@ -58072,7 +73251,10 @@ "plasmid_name": "pDONR223_SMURF2_WT", "sequence-type": "addgene-full", "addgene_id": "82259", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82259.addgene-full.gb" }, @@ -58081,7 +73263,10 @@ "plasmid_name": "pRK5mycGW-Eps8L2", "sequence-type": "addgene-full", "addgene_id": "196542", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196542.addgene-full.gb" }, @@ -58090,7 +73275,6 @@ "plasmid_name": "HA Display H3_A/Hong Kong/1/1968", "sequence-type": "addgene-full", "addgene_id": "206506", - "references": [], "kit": null, "file": "data/addgene_plasmids/206506.addgene-full.gb" }, @@ -58099,7 +73283,10 @@ "plasmid_name": "pDONR_P2R-P3_R2-miniTurbo-mVenus-STOP-L3", "sequence-type": "addgene-full", "addgene_id": "127356", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127356.addgene-full.gb" }, @@ -58108,7 +73295,10 @@ "plasmid_name": "pDONR221-MFSD2B_STOP", "sequence-type": "addgene-full", "addgene_id": "161435", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161435.addgene-full.gb" }, @@ -58117,7 +73307,10 @@ "plasmid_name": "pENTR/pSM2(CMV/TO) (w55-1)", "sequence-type": "depositor-full", "addgene_id": "17388", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17388.depositor-full.gb" }, @@ -58126,7 +73319,6 @@ "plasmid_name": "pAG426-GAL-UBQLN2", "sequence-type": "addgene-full", "addgene_id": "181708", - "references": [], "kit": null, "file": "data/addgene_plasmids/181708.addgene-full.gb" }, @@ -58135,7 +73327,10 @@ "plasmid_name": "pCFJ1358 - Intron GG1 - smu-1", "sequence-type": "addgene-full", "addgene_id": "159804", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159804.addgene-full.gb" }, @@ -58144,7 +73339,10 @@ "plasmid_name": "pAG304GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14303", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -58156,7 +73354,10 @@ "plasmid_name": "Tol2-LyzC-Rac-WT(guide resistant)-2a-mcherry-U6ac-Rac guides", "sequence-type": "addgene-full", "addgene_id": "168242", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "file": "data/addgene_plasmids/168242.addgene-full.gb" }, @@ -58165,7 +73366,10 @@ "plasmid_name": "pHAGE-PIK3CA-T1025N", "sequence-type": "addgene-full", "addgene_id": "116544", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116544.addgene-full.gb" }, @@ -58174,7 +73378,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS-Gln93", "sequence-type": "addgene-full", "addgene_id": "158629", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158629.addgene-full.gb" }, @@ -58183,7 +73390,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TBCK_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170587", - "references": [], "kit": null, "file": "data/addgene_plasmids/170587.addgene-full.gb" }, @@ -58192,7 +73398,9 @@ "plasmid_name": "pMpGWB216", "sequence-type": "depositor-full", "addgene_id": "68607", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68607.depositor-full.gb" }, @@ -58201,7 +73409,10 @@ "plasmid_name": "pSRK2706", "sequence-type": "addgene-full", "addgene_id": "78571", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ab.2016.04.006", + "https://www.ncbi.nlm.nih.gov/pubmed/27105777" + ], "kit": null, "file": "data/addgene_plasmids/78571.addgene-full.gb" }, @@ -58210,7 +73421,10 @@ "plasmid_name": "pAG306GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14260", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -58222,7 +73436,10 @@ "plasmid_name": "ADARB1", "sequence-type": "addgene-full", "addgene_id": "155396", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155396.addgene-full.gb" }, @@ -58231,7 +73448,10 @@ "plasmid_name": "pHAGE-SIRPB1-E170K", "sequence-type": "addgene-full", "addgene_id": "116677", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116677.addgene-full.gb" }, @@ -58240,7 +73460,10 @@ "plasmid_name": "pMuLE ENTR MCS L1-R5", "sequence-type": "depositor-full", "addgene_id": "62084", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62084.depositor-full.gb" }, @@ -58249,7 +73472,10 @@ "plasmid_name": "pHAGE-PIK3R1-K567E", "sequence-type": "addgene-full", "addgene_id": "116597", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116597.addgene-full.gb" }, @@ -58258,7 +73484,10 @@ "plasmid_name": "p667-UBC-MAFG-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207818", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207818.addgene-full.gb" }, @@ -58267,7 +73496,10 @@ "plasmid_name": "pLBD16-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209369", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209369.addgene-full.gb" }, @@ -58276,7 +73508,10 @@ "plasmid_name": "Zed_vector_tol2_-2.1prox1a_2:EGFP_XCA:DsRed2", "sequence-type": "addgene-full", "addgene_id": "218208", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.202525", + "https://www.ncbi.nlm.nih.gov/pubmed/38722096" + ], "kit": null, "file": "data/addgene_plasmids/218208.addgene-full.gb" }, @@ -58285,7 +73520,10 @@ "plasmid_name": "pDONR223_ISX_p.T87A", "sequence-type": "addgene-full", "addgene_id": "81323", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -58297,7 +73535,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-KD", "sequence-type": "addgene-full", "addgene_id": "140297", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140297.addgene-full.gb" }, @@ -58306,7 +73547,10 @@ "plasmid_name": "MAC_N_ETV7", "sequence-type": "addgene-full", "addgene_id": "167756", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167756.addgene-full.gb" }, @@ -58315,7 +73559,10 @@ "plasmid_name": "ITGB2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176983", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176983.addgene-full.gb" }, @@ -58324,7 +73571,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF7a", "sequence-type": "addgene-full", "addgene_id": "169393", - "references": [], "kit": null, "file": "data/addgene_plasmids/169393.addgene-full.gb" }, @@ -58333,7 +73579,9 @@ "plasmid_name": "pEpic_Lite", "sequence-type": "depositor-full", "addgene_id": "84373", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/84373.depositor-full.gb" }, @@ -58342,7 +73590,10 @@ "plasmid_name": "pDONR221_SLC4A5", "sequence-type": "addgene-full", "addgene_id": "132284", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132284.addgene-full.gb" }, @@ -58351,7 +73602,10 @@ "plasmid_name": "Silene_conica _LysRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202655", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "file": "data/addgene_plasmids/202655.addgene-full.gb" }, @@ -58360,7 +73614,10 @@ "plasmid_name": "pInducer20 Cyclin E1", "sequence-type": "addgene-full", "addgene_id": "109348", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.30473", + "https://www.ncbi.nlm.nih.gov/pubmed/29148972" + ], "kit": null, "file": "data/addgene_plasmids/109348.addgene-full.gb" }, @@ -58369,7 +73626,10 @@ "plasmid_name": "pENTR-R4R3-mEGFP-C", "sequence-type": "depositor-full", "addgene_id": "113749", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -58381,7 +73641,6 @@ "plasmid_name": "His8:MBP-tev-His-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83388", - "references": [], "kit": null, "file": "data/addgene_plasmids/83388.addgene-full.gb" }, @@ -58390,7 +73649,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir129-2-wt", "sequence-type": "depositor-full", "addgene_id": "46730", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46730.depositor-full.gb" }, @@ -58399,7 +73661,10 @@ "plasmid_name": "pDONR221_SLC9C2", "sequence-type": "addgene-full", "addgene_id": "132164", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132164.addgene-full.gb" }, @@ -58408,7 +73673,10 @@ "plasmid_name": "Flag-HA-UCHL3", "sequence-type": "addgene-full", "addgene_id": "22564", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22564.addgene-full.gb" }, @@ -58417,7 +73685,10 @@ "plasmid_name": "pLenti PGK FKBP12(F36V)-OGT (Neo)", "sequence-type": "addgene-full", "addgene_id": "154294", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154294.addgene-full.gb" }, @@ -58426,7 +73697,10 @@ "plasmid_name": "pT2-cryR;sheCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90139", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90139.addgene-full.gb" }, @@ -58435,7 +73709,10 @@ "plasmid_name": "pDONR223_FYN_WT", "sequence-type": "addgene-full", "addgene_id": "82211", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82211.addgene-full.gb" }, @@ -58444,7 +73721,10 @@ "plasmid_name": "C453-E24: attB4-UbCp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162980", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -58456,7 +73736,10 @@ "plasmid_name": "pAAV_MLP-BC0250-luc2", "sequence-type": "addgene-full", "addgene_id": "214666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214666.addgene-full.gb" }, @@ -58465,7 +73748,6 @@ "plasmid_name": "pDEST-flox-R4R3", "sequence-type": "addgene-full", "addgene_id": "139517", - "references": [], "kit": null, "file": "data/addgene_plasmids/139517.addgene-full.gb" }, @@ -58474,7 +73756,9 @@ "plasmid_name": "pMpGWB321", "sequence-type": "depositor-full", "addgene_id": "68649", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68649.depositor-full.gb" }, @@ -58483,7 +73767,10 @@ "plasmid_name": "pMx/ATP8B1-HA", "sequence-type": "addgene-full", "addgene_id": "209226", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209226.addgene-full.gb" }, @@ -58492,7 +73779,10 @@ "plasmid_name": "pRU320", "sequence-type": "addgene-full", "addgene_id": "167682", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167682.addgene-full.gb" }, @@ -58501,7 +73791,6 @@ "plasmid_name": "p663-UBC-ER-miniTurbo-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214452", - "references": [], "kit": null, "file": "data/addgene_plasmids/214452.addgene-full.gb" }, @@ -58510,7 +73799,10 @@ "plasmid_name": "pME tdTomato", "sequence-type": "addgene-full", "addgene_id": "135202", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13967", + "https://www.ncbi.nlm.nih.gov/pubmed/25470057" + ], "kit": null, "file": "data/addgene_plasmids/135202.addgene-full.gb" }, @@ -58519,7 +73811,6 @@ "plasmid_name": "IDG_HTR3C_OE_1", "sequence-type": "addgene-full", "addgene_id": "161649", - "references": [], "kit": null, "file": "data/addgene_plasmids/161649.addgene-full.gb" }, @@ -58528,7 +73819,6 @@ "plasmid_name": "pPV475", "sequence-type": "depositor-full", "addgene_id": "42928", - "references": [], "kit": null, "file": "data/addgene_plasmids/42928.depositor-full.gb" }, @@ -58537,7 +73827,10 @@ "plasmid_name": "pQLinkGD", "sequence-type": "depositor-full", "addgene_id": "13673", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkm067", + "https://www.ncbi.nlm.nih.gov/pubmed/17311810" + ], "kit": null, "file": "data/addgene_plasmids/13673.depositor-full.gb" }, @@ -58546,7 +73839,10 @@ "plasmid_name": "LZRS-Rfa", "sequence-type": "addgene-full", "addgene_id": "31601", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-04-0017", + "https://www.ncbi.nlm.nih.gov/pubmed/15342384" + ], "kit": null, "file": "data/addgene_plasmids/31601.addgene-full.gb" }, @@ -58555,7 +73851,10 @@ "plasmid_name": "TOB2", "sequence-type": "addgene-full", "addgene_id": "156090", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156090.addgene-full.gb" }, @@ -58564,7 +73863,6 @@ "plasmid_name": "pLEX307-APN-blast", "sequence-type": "addgene-full", "addgene_id": "158455", - "references": [], "kit": null, "file": "data/addgene_plasmids/158455.addgene-full.gb" }, @@ -58573,7 +73871,10 @@ "plasmid_name": "pHAGE-EZH2", "sequence-type": "addgene-full", "addgene_id": "116738", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116738.addgene-full.gb" }, @@ -58582,7 +73883,10 @@ "plasmid_name": "pShuttle", "sequence-type": "addgene-full", "addgene_id": "192871", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "file": "data/addgene_plasmids/192871.addgene-full.gb" }, @@ -58591,7 +73895,10 @@ "plasmid_name": "pSN007", "sequence-type": "addgene-full", "addgene_id": "102440", - "references": [], + "references": [ + "https://doi.org/10.3791/57998", + "https://www.ncbi.nlm.nih.gov/pubmed/30346403" + ], "kit": null, "file": "data/addgene_plasmids/102440.addgene-full.gb" }, @@ -58600,7 +73907,10 @@ "plasmid_name": "Flag-GFP11-pDEST-N", "sequence-type": "addgene-full", "addgene_id": "118366", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118366.addgene-full.gb" }, @@ -58609,7 +73919,10 @@ "plasmid_name": "pHAGE EF1\u03b1 dCas9-VP64", "sequence-type": "depositor-full", "addgene_id": "50918", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.103341", + "https://www.ncbi.nlm.nih.gov/pubmed/24346702" + ], "kit": null, "file": "data/addgene_plasmids/50918.depositor-full.gb" }, @@ -58618,7 +73931,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS5", "sequence-type": "depositor-full", "addgene_id": "20244", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20244.depositor-full.gb" }, @@ -58627,7 +73943,10 @@ "plasmid_name": "pLENTI_Hu_ECT2(WT)", "sequence-type": "addgene-full", "addgene_id": "136330", - "references": [], + "references": [ + "https://doi.org/10.1038/nm.4364", + "https://www.ncbi.nlm.nih.gov/pubmed/28692064" + ], "kit": null, "file": "data/addgene_plasmids/136330.addgene-full.gb" }, @@ -58636,7 +73955,6 @@ "plasmid_name": "pCM1.109", "sequence-type": "depositor-full", "addgene_id": "19597", - "references": [], "kit": null, "file": "data/addgene_plasmids/19597.depositor-full.gb" }, @@ -58645,7 +73963,10 @@ "plasmid_name": "R989-X30-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) G13D", "sequence-type": "addgene-full", "addgene_id": "159557", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159557.addgene-full.gb" }, @@ -58654,7 +73975,10 @@ "plasmid_name": "pDONR221-SLC25A31_STOP", "sequence-type": "depositor-full", "addgene_id": "161135", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161135.depositor-full.gb" }, @@ -58663,7 +73987,10 @@ "plasmid_name": "TFORF3523", "sequence-type": "depositor-full", "addgene_id": "144999", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144999.depositor-full.gb" }, @@ -58672,7 +73999,10 @@ "plasmid_name": "pYZ462", "sequence-type": "addgene-full", "addgene_id": "187970", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkad491", + "https://www.ncbi.nlm.nih.gov/pubmed/37326023" + ], "kit": null, "file": "data/addgene_plasmids/187970.addgene-full.gb" }, @@ -58681,7 +74011,10 @@ "plasmid_name": "pDONR223-ZNF285", "sequence-type": "addgene-full", "addgene_id": "88760", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88760.addgene-full.gb" }, @@ -58690,7 +74023,10 @@ "plasmid_name": "c-myc-PT3EF1a", "sequence-type": "addgene-full", "addgene_id": "92046", - "references": [], + "references": [ + "https://doi.org/10.1002/hep.29183", + "https://www.ncbi.nlm.nih.gov/pubmed/28370287" + ], "kit": null, "file": "data/addgene_plasmids/92046.addgene-full.gb" }, @@ -58699,7 +74035,10 @@ "plasmid_name": "pHAGE-NRAS-K135N", "sequence-type": "addgene-full", "addgene_id": "116443", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116443.addgene-full.gb" }, @@ -58708,7 +74047,6 @@ "plasmid_name": "R777-E153 Hs.PAK4", "sequence-type": "depositor-full", "addgene_id": "70437", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -58720,7 +74058,10 @@ "plasmid_name": "C413-E34: attB4-mCMVp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162926", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -58732,7 +74073,10 @@ "plasmid_name": "pAG414GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14384", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -58744,7 +74088,10 @@ "plasmid_name": "pMuLE ENTR SV40 iRFP L3-L2", "sequence-type": "depositor-full", "addgene_id": "62160", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62160.depositor-full.gb" }, @@ -58753,7 +74100,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 481-852)", "sequence-type": "addgene-full", "addgene_id": "119316", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119316.addgene-full.gb" }, @@ -58762,7 +74112,10 @@ "plasmid_name": "pKH142_EGFP-YIPF3 WT", "sequence-type": "addgene-full", "addgene_id": "214974", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "file": "data/addgene_plasmids/214974.addgene-full.gb" }, @@ -58771,7 +74124,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS2A", "sequence-type": "addgene-full", "addgene_id": "145353", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145353.addgene-full.gb" }, @@ -58780,7 +74136,10 @@ "plasmid_name": "AAEL009698 SIFa R", "sequence-type": "addgene-full", "addgene_id": "115403", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115403.addgene-full.gb" }, @@ -58789,7 +74148,10 @@ "plasmid_name": "pPB-cT3G-cERP2-ZBTB16", "sequence-type": "addgene-full", "addgene_id": "192903", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192903.addgene-full.gb" }, @@ -58798,7 +74160,10 @@ "plasmid_name": "pENTR-L3-SpCas9-HF1-2A-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141048", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141048.addgene-full.gb" }, @@ -58807,7 +74172,10 @@ "plasmid_name": "pCW57.1-ZNF746", "sequence-type": "addgene-full", "addgene_id": "207825", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207825.addgene-full.gb" }, @@ -58816,7 +74184,10 @@ "plasmid_name": "pLCS100", "sequence-type": "addgene-full", "addgene_id": "209354", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209354.addgene-full.gb" }, @@ -58825,7 +74196,10 @@ "plasmid_name": "pYPQ265E9", "sequence-type": "addgene-full", "addgene_id": "213472", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-024-49473-w", + "https://www.ncbi.nlm.nih.gov/pubmed/38877035" + ], "kit": null, "file": "data/addgene_plasmids/213472.addgene-full.gb" }, @@ -58834,7 +74208,10 @@ "plasmid_name": "pDONR221_SLC9A2", "sequence-type": "addgene-full", "addgene_id": "132222", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132222.addgene-full.gb" }, @@ -58843,7 +74220,10 @@ "plasmid_name": "pCFJ782 - HygroR", "sequence-type": "addgene-full", "addgene_id": "190933", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "file": "data/addgene_plasmids/190933.addgene-full.gb" }, @@ -58852,7 +74232,6 @@ "plasmid_name": "V5-deltaUBA-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "195405", - "references": [], "kit": null, "file": "data/addgene_plasmids/195405.addgene-full.gb" }, @@ -58861,7 +74240,10 @@ "plasmid_name": "pTORGm43GWR", "sequence-type": "addgene-full", "addgene_id": "112905", - "references": [], + "references": [ + "https://doi.org/10.1186/s12866-019-1642-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31775609" + ], "kit": null, "file": "data/addgene_plasmids/112905.addgene-full.gb" }, @@ -58870,7 +74252,10 @@ "plasmid_name": "pDONR223_RAC1_WT", "sequence-type": "addgene-full", "addgene_id": "82157", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82157.addgene-full.gb" }, @@ -58879,7 +74264,10 @@ "plasmid_name": "pAG426GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14179", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -58891,7 +74279,10 @@ "plasmid_name": "DUX4_KBM pDonor221", "sequence-type": "addgene-full", "addgene_id": "187802", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187802.addgene-full.gb" }, @@ -58900,7 +74291,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP1 Delta RC", "sequence-type": "addgene-full", "addgene_id": "164522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.10.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33080218" + ], "kit": null, "file": "data/addgene_plasmids/164522.addgene-full.gb" }, @@ -58909,7 +74303,10 @@ "plasmid_name": "pDONR223_CYLC2_p.E133K", "sequence-type": "addgene-full", "addgene_id": "81385", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -58921,7 +74318,6 @@ "plasmid_name": "Hs.KRAS4b A146T", "sequence-type": "depositor-full", "addgene_id": "83150", - "references": [], "kit": null, "file": "data/addgene_plasmids/83150.depositor-full.gb" }, @@ -58930,7 +74326,10 @@ "plasmid_name": "pHAGE-PIK3CA-R108C", "sequence-type": "addgene-full", "addgene_id": "116531", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116531.addgene-full.gb" }, @@ -58939,7 +74338,10 @@ "plasmid_name": "pRC246", "sequence-type": "addgene-full", "addgene_id": "123038", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123038.addgene-full.gb" }, @@ -58948,7 +74350,10 @@ "plasmid_name": "pDONR221_SLC6A11", "sequence-type": "addgene-full", "addgene_id": "132159", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132159.addgene-full.gb" }, @@ -58957,7 +74362,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-N17-neo", "sequence-type": "addgene-full", "addgene_id": "156179", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156179.addgene-full.gb" }, @@ -58966,7 +74374,10 @@ "plasmid_name": "pEAHISSO1404", "sequence-type": "addgene-full", "addgene_id": "97056", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97056.addgene-full.gb" }, @@ -58975,7 +74386,10 @@ "plasmid_name": "LIIIalpha R A-B", "sequence-type": "depositor-full", "addgene_id": "54383", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54383.depositor-full.gb" }, @@ -58984,7 +74398,10 @@ "plasmid_name": "pLX307 HRAS", "sequence-type": "addgene-full", "addgene_id": "117748", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117748.addgene-full.gb" }, @@ -58993,7 +74410,10 @@ "plasmid_name": "pDEST15-Eps8L2_297-370", "sequence-type": "addgene-full", "addgene_id": "196537", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196537.addgene-full.gb" }, @@ -59002,7 +74422,10 @@ "plasmid_name": "pLD-puro-2A-rtTA-TcVA", "sequence-type": "addgene-full", "addgene_id": "24592", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.M000002-MCP201", + "https://www.ncbi.nlm.nih.gov/pubmed/20305087" + ], "kit": null, "file": "data/addgene_plasmids/24592.addgene-full.gb" }, @@ -59011,7 +74434,10 @@ "plasmid_name": "Flag-HA-STAMBPL1", "sequence-type": "addgene-full", "addgene_id": "22559", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22559.addgene-full.gb" }, @@ -59020,7 +74446,10 @@ "plasmid_name": "pDONR221-UCP1_STOP", "sequence-type": "addgene-full", "addgene_id": "161440", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161440.addgene-full.gb" }, @@ -59029,7 +74458,10 @@ "plasmid_name": "pENTR/D-Topo CDS A. thaliana IMPORTIN ALPHA 9", "sequence-type": "addgene-full", "addgene_id": "175817", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12691", + "https://www.ncbi.nlm.nih.gov/pubmed/25284001" + ], "kit": null, "file": "data/addgene_plasmids/175817.addgene-full.gb" }, @@ -59038,7 +74470,6 @@ "plasmid_name": "R777-E195 Hs.PRKAB1", "sequence-type": "depositor-full", "addgene_id": "70479", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -59050,7 +74481,6 @@ "plasmid_name": "IDG_TMC7_OE_1", "sequence-type": "addgene-full", "addgene_id": "161674", - "references": [], "kit": null, "file": "data/addgene_plasmids/161674.addgene-full.gb" }, @@ -59059,7 +74489,10 @@ "plasmid_name": "pPHAGE_DLD-S456A-C-TAP", "sequence-type": "depositor-full", "addgene_id": "83479", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "file": "data/addgene_plasmids/83479.depositor-full.gb" }, @@ -59068,7 +74501,10 @@ "plasmid_name": "pYPQ269C2", "sequence-type": "addgene-full", "addgene_id": "164716", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164716.addgene-full.gb" }, @@ -59077,7 +74513,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term SRSF7", "sequence-type": "addgene-full", "addgene_id": "187582", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187582.addgene-full.gb" }, @@ -59086,7 +74525,6 @@ "plasmid_name": "pLEX307-CTSL-G418", "sequence-type": "addgene-full", "addgene_id": "158468", - "references": [], "kit": null, "file": "data/addgene_plasmids/158468.addgene-full.gb" }, @@ -59095,7 +74533,10 @@ "plasmid_name": "pENTR221-WNT3A", "sequence-type": "addgene-full", "addgene_id": "79501", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79501.addgene-full.gb" }, @@ -59104,7 +74545,10 @@ "plasmid_name": "pDONR221_SLC25A28", "sequence-type": "addgene-full", "addgene_id": "132016", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132016.addgene-full.gb" }, @@ -59113,7 +74557,10 @@ "plasmid_name": "pCPP5537", "sequence-type": "addgene-full", "addgene_id": "128730", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128730.addgene-full.gb" }, @@ -59122,7 +74569,10 @@ "plasmid_name": "pAG305GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14137", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -59134,7 +74584,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-API5", "sequence-type": "depositor-full", "addgene_id": "38074", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38074.depositor-full.gb" }, @@ -59143,7 +74596,10 @@ "plasmid_name": "pDEST-Flag-FBW7K404R", "sequence-type": "addgene-full", "addgene_id": "200717", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "file": "data/addgene_plasmids/200717.addgene-full.gb" }, @@ -59152,7 +74608,10 @@ "plasmid_name": "pNJB91", "sequence-type": "depositor-full", "addgene_id": "51519", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51519.depositor-full.gb" }, @@ -59161,7 +74620,10 @@ "plasmid_name": "pDONR223_CHUK_WT", "sequence-type": "addgene-full", "addgene_id": "82083", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -59173,7 +74635,10 @@ "plasmid_name": "pACT2-Esf1", "sequence-type": "addgene-full", "addgene_id": "99988", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99988.addgene-full.gb" }, @@ -59182,7 +74647,9 @@ "plasmid_name": "pMpGWB434", "sequence-type": "depositor-full", "addgene_id": "68699", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68699.depositor-full.gb" }, @@ -59191,7 +74658,10 @@ "plasmid_name": "TFORF3484", "sequence-type": "addgene-full", "addgene_id": "144960", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144960.addgene-full.gb" }, @@ -59200,7 +74670,9 @@ "plasmid_name": "pDONR221-PRDX1", "sequence-type": "addgene-full", "addgene_id": "166197", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166197.addgene-full.gb" }, @@ -59209,7 +74681,10 @@ "plasmid_name": "pHAGE-EGFR-G719C", "sequence-type": "addgene-full", "addgene_id": "116254", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116254.addgene-full.gb" }, @@ -59218,7 +74693,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP10_stop", "sequence-type": "addgene-full", "addgene_id": "168552", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168552.addgene-full.gb" }, @@ -59227,7 +74705,10 @@ "plasmid_name": "pJW4.02", "sequence-type": "depositor-full", "addgene_id": "62867", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62867.depositor-full.gb" }, @@ -59236,7 +74717,10 @@ "plasmid_name": "pENTR223-BALF5", "sequence-type": "addgene-full", "addgene_id": "198577", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198577.addgene-full.gb" }, @@ -59245,7 +74729,10 @@ "plasmid_name": "pEN_TTmiRc2_3xflag_NRF2", "sequence-type": "addgene-full", "addgene_id": "136527", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136527.addgene-full.gb" }, @@ -59254,7 +74741,6 @@ "plasmid_name": "CDH5-AbR-GFP", "sequence-type": "addgene-full", "addgene_id": "122970", - "references": [], "kit": null, "file": "data/addgene_plasmids/122970.addgene-full.gb" }, @@ -59263,7 +74749,10 @@ "plasmid_name": "pDONR221-SLC6A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161325", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161325.addgene-full.gb" }, @@ -59272,7 +74761,10 @@ "plasmid_name": "pDONR223_BRAF_p.V600E", "sequence-type": "addgene-full", "addgene_id": "81700", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -59284,7 +74776,10 @@ "plasmid_name": "pYPQ150", "sequence-type": "depositor-full", "addgene_id": "69301", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69301.depositor-full.gb" }, @@ -59293,7 +74788,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168906", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168906.addgene-full.gb" }, @@ -59302,7 +74800,10 @@ "plasmid_name": "pDR FLIP43 GPS1-NR", "sequence-type": "addgene-full", "addgene_id": "101085", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-017-0021-9", + "https://www.ncbi.nlm.nih.gov/pubmed/28970478" + ], "kit": null, "file": "data/addgene_plasmids/101085.addgene-full.gb" }, @@ -59311,7 +74812,10 @@ "plasmid_name": "pMMLV-EBFP-P2A-Puro", "sequence-type": "addgene-full", "addgene_id": "160227", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.07.009", + "https://www.ncbi.nlm.nih.gov/pubmed/34352222" + ], "kit": null, "file": "data/addgene_plasmids/160227.addgene-full.gb" }, @@ -59320,7 +74824,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF6_nostop", "sequence-type": "addgene-full", "addgene_id": "149323", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149323.addgene-full.gb" }, @@ -59329,7 +74836,10 @@ "plasmid_name": "pDONR-IAA19_no stop", "sequence-type": "depositor-full", "addgene_id": "83857", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83857.depositor-full.gb" }, @@ -59338,7 +74848,10 @@ "plasmid_name": "pCR8_TaNAM-A1", "sequence-type": "addgene-full", "addgene_id": "124574", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "file": "data/addgene_plasmids/124574.addgene-full.gb" }, @@ -59347,7 +74860,10 @@ "plasmid_name": "pDONR223_FAM173B_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82986", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82986.addgene-full.gb" }, @@ -59356,7 +74872,10 @@ "plasmid_name": "KK701: pMAGIC (L3-L2) 3x HA eptitope tag + polyA; hU6::xCas9(3.7) gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121842", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121842.addgene-full.gb" }, @@ -59365,7 +74884,10 @@ "plasmid_name": "pDONR221-kcnj12b", "sequence-type": "addgene-full", "addgene_id": "173142", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173142.addgene-full.gb" }, @@ -59374,7 +74896,10 @@ "plasmid_name": "BMPR1A_pLX307", "sequence-type": "addgene-full", "addgene_id": "98320", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98320.addgene-full.gb" }, @@ -59383,7 +74908,10 @@ "plasmid_name": "pLX317-VRK2", "sequence-type": "addgene-full", "addgene_id": "199641", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "file": "data/addgene_plasmids/199641.addgene-full.gb" }, @@ -59392,7 +74920,10 @@ "plasmid_name": "KHBD00188", "sequence-type": "addgene-full", "addgene_id": "34340", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1763", + "https://www.ncbi.nlm.nih.gov/pubmed/22037703" + ], "kit": null, "file": "data/addgene_plasmids/34340.addgene-full.gb" }, @@ -59401,7 +74932,6 @@ "plasmid_name": "R777-E219 Hs.RALBP1", "sequence-type": "depositor-full", "addgene_id": "70503", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -59413,7 +74943,10 @@ "plasmid_name": "pRecLV103-GFP-PGBD5", "sequence-type": "depositor-full", "addgene_id": "65409", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.10565", + "https://www.ncbi.nlm.nih.gov/pubmed/26406119" + ], "kit": null, "file": "data/addgene_plasmids/65409.depositor-full.gb" }, @@ -59422,7 +74955,10 @@ "plasmid_name": "pEBTet-SNAP-plk4", "sequence-type": "addgene-full", "addgene_id": "136788", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136788.addgene-full.gb" }, @@ -59431,7 +74967,6 @@ "plasmid_name": "R777-E015 Hs.BRAF", "sequence-type": "depositor-full", "addgene_id": "70299", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -59443,7 +74978,6 @@ "plasmid_name": "pSCM167-Venus-VF-hADAM10(aa1-459)", "sequence-type": "addgene-full", "addgene_id": "189559", - "references": [], "kit": null, "file": "data/addgene_plasmids/189559.addgene-full.gb" }, @@ -59452,7 +74986,10 @@ "plasmid_name": "pDONR223_EGFR_p.774_775insHV", "sequence-type": "addgene-full", "addgene_id": "82852", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82852.addgene-full.gb" }, @@ -59461,7 +74998,10 @@ "plasmid_name": "tetO-Hand2", "sequence-type": "addgene-full", "addgene_id": "46028", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "file": "data/addgene_plasmids/46028.addgene-full.gb" }, @@ -59470,7 +75010,10 @@ "plasmid_name": "pDONR221-SLC13A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161111", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161111.addgene-full.gb" }, @@ -59479,7 +75022,10 @@ "plasmid_name": "pHAGE-FGFR2-N549K", "sequence-type": "addgene-full", "addgene_id": "116380", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116380.addgene-full.gb" }, @@ -59488,7 +75034,10 @@ "plasmid_name": "actc1b-mKate2-rab33ba", "sequence-type": "addgene-full", "addgene_id": "109624", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109624.addgene-full.gb" }, @@ -59497,7 +75046,6 @@ "plasmid_name": "pAM-35s-ABI2-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102383", - "references": [], "kit": null, "file": "data/addgene_plasmids/102383.addgene-full.gb" }, @@ -59506,7 +75054,10 @@ "plasmid_name": "p221z-erTagRFP", "sequence-type": "depositor-full", "addgene_id": "71266", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71266.depositor-full.gb" }, @@ -59515,7 +75066,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp15", "sequence-type": "depositor-full", "addgene_id": "168844", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168844.depositor-full.gb" }, @@ -59524,7 +75078,9 @@ "plasmid_name": "GGDest3-Amp", "sequence-type": "addgene-full", "addgene_id": "157651", - "references": [], + "references": [ + "https://doi.org/10.17504/protocols.io.brgcm3sw" + ], "kit": null, "file": "data/addgene_plasmids/157651.addgene-full.gb" }, @@ -59533,7 +75089,9 @@ "plasmid_name": "p5E-hs_Cldn5 (JDW 1120)", "sequence-type": "addgene-full", "addgene_id": "224481", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224481.addgene-full.gb" }, @@ -59542,7 +75100,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-E", "sequence-type": "addgene-full", "addgene_id": "154418", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154418.addgene-full.gb" }, @@ -59551,7 +75112,10 @@ "plasmid_name": "pENTR4_CELF1", "sequence-type": "addgene-full", "addgene_id": "106098", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106098.addgene-full.gb" }, @@ -59560,7 +75124,10 @@ "plasmid_name": "pEN_TT 3xFLAG-BCAS2", "sequence-type": "addgene-full", "addgene_id": "192294", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192294.addgene-full.gb" }, @@ -59569,7 +75136,10 @@ "plasmid_name": "pGWB408", "sequence-type": "depositor-full", "addgene_id": "74802", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74802.depositor-full.gb" }, @@ -59578,7 +75148,10 @@ "plasmid_name": "pAG306-GPD-VPH2 chr I", "sequence-type": "depositor-full", "addgene_id": "41897", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11654", + "https://www.ncbi.nlm.nih.gov/pubmed/23172144" + ], "kit": null, "file": "data/addgene_plasmids/41897.depositor-full.gb" }, @@ -59587,7 +75160,10 @@ "plasmid_name": "pJWK_VD_03", "sequence-type": "addgene-full", "addgene_id": "158104", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2020.08.002", + "https://www.ncbi.nlm.nih.gov/pubmed/32846140" + ], "kit": null, "file": "data/addgene_plasmids/158104.addgene-full.gb" }, @@ -59596,7 +75172,6 @@ "plasmid_name": "His SUMO TEV W22R SPOP 1-374", "sequence-type": "addgene-full", "addgene_id": "197016", - "references": [], "kit": null, "file": "data/addgene_plasmids/197016.addgene-full.gb" }, @@ -59605,7 +75180,10 @@ "plasmid_name": "pHAGE-EGFR-L747_S752delLREATS", "sequence-type": "addgene-full", "addgene_id": "116269", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116269.addgene-full.gb" }, @@ -59614,7 +75192,10 @@ "plasmid_name": "pDONR223_TPK1_p.L185I", "sequence-type": "addgene-full", "addgene_id": "82920", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82920.addgene-full.gb" }, @@ -59623,7 +75204,10 @@ "plasmid_name": "pKLV2-EF1a-Cas9GFP-W", "sequence-type": "addgene-full", "addgene_id": "200100", - "references": [], + "references": [ + "https://doi.org/10.1182/blood.2023020857", + "https://www.ncbi.nlm.nih.gov/pubmed/37922452" + ], "kit": null, "file": "data/addgene_plasmids/200100.addgene-full.gb" }, @@ -59632,7 +75216,10 @@ "plasmid_name": "IA001: pMVP (L3-L2) 3x HA epitope tag+ polyA", "sequence-type": "addgene-full", "addgene_id": "121750", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121750.addgene-full.gb" }, @@ -59641,7 +75228,9 @@ "plasmid_name": "pME-Trpa1b-2A-mCherry", "sequence-type": "addgene-full", "addgene_id": "106291", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28928472" + ], "kit": null, "file": "data/addgene_plasmids/106291.addgene-full.gb" }, @@ -59650,7 +75239,10 @@ "plasmid_name": "pJOG387", "sequence-type": "addgene-full", "addgene_id": "105338", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -59662,7 +75254,6 @@ "plasmid_name": "R777-E049 Hs.E2F3", "sequence-type": "depositor-full", "addgene_id": "70333", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -59674,7 +75265,10 @@ "plasmid_name": "pENTR-Creb5(T59/T61D)(HA)", "sequence-type": "addgene-full", "addgene_id": "195026", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "file": "data/addgene_plasmids/195026.addgene-full.gb" }, @@ -59683,7 +75277,10 @@ "plasmid_name": "A1-LCD+7R+10D", "sequence-type": "addgene-full", "addgene_id": "178677", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178677.addgene-full.gb" }, @@ -59692,7 +75289,10 @@ "plasmid_name": "pDONR221-SLC26A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161318", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161318.addgene-full.gb" }, @@ -59701,7 +75301,10 @@ "plasmid_name": "A1-LCD Aro--", "sequence-type": "addgene-full", "addgene_id": "169716", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "file": "data/addgene_plasmids/169716.addgene-full.gb" }, @@ -59710,7 +75313,10 @@ "plasmid_name": "pDONR223_OMA1_WT", "sequence-type": "addgene-full", "addgene_id": "81889", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -59722,7 +75328,10 @@ "plasmid_name": "pHAGE-BRAF-P367S", "sequence-type": "addgene-full", "addgene_id": "116189", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116189.addgene-full.gb" }, @@ -59731,7 +75340,10 @@ "plasmid_name": "pLenti X2 Blast DEST (w46-2)", "sequence-type": "depositor-full", "addgene_id": "17391", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17391.depositor-full.gb" }, @@ -59740,7 +75352,10 @@ "plasmid_name": "TFORF3033", "sequence-type": "addgene-full", "addgene_id": "144509", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144509.addgene-full.gb" }, @@ -59749,7 +75364,10 @@ "plasmid_name": "pCMB-TGN61r", "sequence-type": "depositor-full", "addgene_id": "61175", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61175.depositor-full.gb" }, @@ -59758,7 +75376,10 @@ "plasmid_name": "pLEX307-SARS-CoV-3CL-C145A", "sequence-type": "addgene-full", "addgene_id": "160281", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160281.addgene-full.gb" }, @@ -59767,7 +75388,10 @@ "plasmid_name": "pINDUCER21-puro_TAOK1", "sequence-type": "addgene-full", "addgene_id": "209777", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/209777.addgene-full.gb" }, @@ -59776,7 +75400,6 @@ "plasmid_name": "pDONR223 MitoFlux (pSu9-HaloTag7-mGFP-STOP)", "sequence-type": "addgene-full", "addgene_id": "215001", - "references": [], "kit": null, "file": "data/addgene_plasmids/215001.addgene-full.gb" }, @@ -59785,7 +75408,10 @@ "plasmid_name": "pR26 CAG/BFP Dest", "sequence-type": "depositor-full", "addgene_id": "74282", - "references": [], + "references": [ + "https://doi.org/10.1186/s12896-016-0234-4", + "https://www.ncbi.nlm.nih.gov/pubmed/26772810" + ], "kit": null, "file": "data/addgene_plasmids/74282.depositor-full.gb" }, @@ -59794,7 +75420,10 @@ "plasmid_name": "pHAGE-ALK-R401Q", "sequence-type": "addgene-full", "addgene_id": "116112", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116112.addgene-full.gb" }, @@ -59803,7 +75432,10 @@ "plasmid_name": "pMOS018: ratiometric pHluorin (mitchondrial)", "sequence-type": "addgene-full", "addgene_id": "163053", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163053.addgene-full.gb" }, @@ -59812,7 +75444,9 @@ "plasmid_name": "pMpGWB126", "sequence-type": "depositor-full", "addgene_id": "68580", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68580.depositor-full.gb" }, @@ -59821,7 +75455,10 @@ "plasmid_name": "pDEST17-ALDH1A3", "sequence-type": "addgene-full", "addgene_id": "189750", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "file": "data/addgene_plasmids/189750.addgene-full.gb" }, @@ -59830,7 +75467,10 @@ "plasmid_name": "pDONR223_XPO1_WT", "sequence-type": "addgene-full", "addgene_id": "81812", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -59842,7 +75482,10 @@ "plasmid_name": "pDONR221-SLC12A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161063", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161063.addgene-full.gb" }, @@ -59851,7 +75494,10 @@ "plasmid_name": "pDONR223_SMAD4_p.R361P", "sequence-type": "addgene-full", "addgene_id": "81446", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -59863,7 +75509,10 @@ "plasmid_name": "pLX-EF1a_NKX2-5", "sequence-type": "addgene-full", "addgene_id": "221491", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221491.addgene-full.gb" }, @@ -59872,7 +75521,6 @@ "plasmid_name": "CMYA5tnT/pENTR3C", "sequence-type": "addgene-full", "addgene_id": "98129", - "references": [], "kit": null, "file": "data/addgene_plasmids/98129.addgene-full.gb" }, @@ -59881,7 +75529,10 @@ "plasmid_name": "pCW-eGFP-FHA-SHLD2-m1", "sequence-type": "addgene-full", "addgene_id": "114122", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "file": "data/addgene_plasmids/114122.addgene-full.gb" }, @@ -59890,7 +75541,10 @@ "plasmid_name": "TFORF3196", "sequence-type": "addgene-full", "addgene_id": "144672", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144672.addgene-full.gb" }, @@ -59899,7 +75553,10 @@ "plasmid_name": "pAC1803_pmax-RBM38-dCasRx", "sequence-type": "addgene-full", "addgene_id": "118637", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118637.addgene-full.gb" }, @@ -59908,7 +75565,10 @@ "plasmid_name": "pDONR221_SLC16A2", "sequence-type": "addgene-full", "addgene_id": "131887", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131887.addgene-full.gb" }, @@ -59917,7 +75577,10 @@ "plasmid_name": "LUC7L", "sequence-type": "addgene-full", "addgene_id": "155713", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155713.addgene-full.gb" }, @@ -59926,7 +75589,6 @@ "plasmid_name": "Tgfb-Induced-Enhancer:Beta-globin-minimal-promoter-EGFP:pA pDestTol2pA2", "sequence-type": "addgene-full", "addgene_id": "220508", - "references": [], "kit": null, "file": "data/addgene_plasmids/220508.addgene-full.gb" }, @@ -59935,7 +75597,10 @@ "plasmid_name": "plenti-UBC-gate-3xHA-pGK-PUR", "sequence-type": "addgene-full", "addgene_id": "107393", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107393.addgene-full.gb" }, @@ -59944,7 +75609,10 @@ "plasmid_name": "pCWX-UBI-hTert-PGK-BSD", "sequence-type": "addgene-full", "addgene_id": "114316", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-125-7_25", + "https://www.ncbi.nlm.nih.gov/pubmed/23097121" + ], "kit": null, "file": "data/addgene_plasmids/114316.addgene-full.gb" }, @@ -59953,7 +75621,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.L177M", "sequence-type": "addgene-full", "addgene_id": "81672", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -59965,7 +75636,10 @@ "plasmid_name": "5'-BirA-FLAG GFP minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212087", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212087.addgene-full.gb" }, @@ -59974,7 +75648,10 @@ "plasmid_name": "pAG305GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14354", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -59986,7 +75663,10 @@ "plasmid_name": "TFORF2970", "sequence-type": "addgene-full", "addgene_id": "144446", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144446.addgene-full.gb" }, @@ -59995,7 +75675,10 @@ "plasmid_name": "pENTR-Site6", "sequence-type": "depositor-full", "addgene_id": "24515", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0009846", + "https://www.ncbi.nlm.nih.gov/pubmed/20352097" + ], "kit": null, "file": "data/addgene_plasmids/24515.depositor-full.gb" }, @@ -60004,7 +75687,10 @@ "plasmid_name": "p3E-rab25a", "sequence-type": "addgene-full", "addgene_id": "109682", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109682.addgene-full.gb" }, @@ -60013,7 +75699,10 @@ "plasmid_name": "pcDNA3.2/NS5-YFP-NLS-mut", "sequence-type": "addgene-full", "addgene_id": "120832", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120832.addgene-full.gb" }, @@ -60022,7 +75711,10 @@ "plasmid_name": "pDONR221_MFSD6", "sequence-type": "addgene-full", "addgene_id": "131953", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131953.addgene-full.gb" }, @@ -60031,7 +75723,10 @@ "plasmid_name": "pQLinkHD_ECFP", "sequence-type": "addgene-full", "addgene_id": "118857", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "file": "data/addgene_plasmids/118857.addgene-full.gb" }, @@ -60040,7 +75735,10 @@ "plasmid_name": "TFORF3336", "sequence-type": "addgene-full", "addgene_id": "144812", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144812.addgene-full.gb" }, @@ -60049,7 +75747,6 @@ "plasmid_name": "pBABEpuro-CRAF", "sequence-type": "addgene-full", "addgene_id": "51124", - "references": [], "kit": null, "file": "data/addgene_plasmids/51124.addgene-full.gb" }, @@ -60058,7 +75755,10 @@ "plasmid_name": "pDONR223_RBM10_p.R171W", "sequence-type": "addgene-full", "addgene_id": "81592", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -60070,7 +75770,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep97", "sequence-type": "addgene-full", "addgene_id": "136801", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136801.addgene-full.gb" }, @@ -60079,7 +75782,6 @@ "plasmid_name": "Hs.NRAS Q61K", "sequence-type": "depositor-full", "addgene_id": "83180", - "references": [], "kit": null, "file": "data/addgene_plasmids/83180.depositor-full.gb" }, @@ -60088,7 +75790,10 @@ "plasmid_name": "pDONR223_KIF2B_p.W60L", "sequence-type": "addgene-full", "addgene_id": "81509", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -60100,7 +75805,10 @@ "plasmid_name": "pDONR223_MAX_p.R60del", "sequence-type": "addgene-full", "addgene_id": "82740", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -60112,7 +75820,10 @@ "plasmid_name": "JDW 829 (pTol2-kdrl:V5-mTagBFP2-hsKRAS4A-G12D-ac/Y)", "sequence-type": "addgene-full", "addgene_id": "156415", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156415.addgene-full.gb" }, @@ -60121,7 +75832,10 @@ "plasmid_name": "pENTR-L5-Kir2.1-mCherry-L2", "sequence-type": "depositor-full", "addgene_id": "32669", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32669.depositor-full.gb" }, @@ -60130,7 +75844,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-SV40 NLS zeo", "sequence-type": "addgene-full", "addgene_id": "192340", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192340.addgene-full.gb" }, @@ -60139,7 +75856,10 @@ "plasmid_name": "pDON223 Spike D1118H", "sequence-type": "addgene-full", "addgene_id": "180068", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180068.addgene-full.gb" }, @@ -60148,7 +75868,10 @@ "plasmid_name": "actc1b-mKate2-rab2a", "sequence-type": "addgene-full", "addgene_id": "109619", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109619.addgene-full.gb" }, @@ -60157,7 +75880,10 @@ "plasmid_name": "pAAVS1-P-CAG-DEST", "sequence-type": "addgene-full", "addgene_id": "80490", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "file": "data/addgene_plasmids/80490.addgene-full.gb" }, @@ -60166,7 +75892,10 @@ "plasmid_name": "TFORF3413", "sequence-type": "addgene-full", "addgene_id": "144889", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144889.addgene-full.gb" }, @@ -60175,7 +75904,10 @@ "plasmid_name": "pDEST12.2 DYRK2 WT", "sequence-type": "addgene-full", "addgene_id": "20005", - "references": [], + "references": [ + "https://doi.org/10.1038/nature04631", + "https://www.ncbi.nlm.nih.gov/pubmed/16511445" + ], "kit": null, "file": "data/addgene_plasmids/20005.addgene-full.gb" }, @@ -60184,7 +75916,10 @@ "plasmid_name": "pDONR221 CARD8 PAM S297A", "sequence-type": "addgene-full", "addgene_id": "169976", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169976.addgene-full.gb" }, @@ -60193,7 +75928,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF9B", "sequence-type": "addgene-full", "addgene_id": "154425", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154425.addgene-full.gb" }, @@ -60202,7 +75940,10 @@ "plasmid_name": "LIIalpha R 4-5", "sequence-type": "depositor-full", "addgene_id": "54353", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54353.depositor-full.gb" }, @@ -60211,7 +75952,10 @@ "plasmid_name": "pMXs-ms-Klf1", "sequence-type": "depositor-full", "addgene_id": "50785", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt1374", + "https://www.ncbi.nlm.nih.gov/pubmed/18059259" + ], "kit": null, "file": "data/addgene_plasmids/50785.depositor-full.gb" }, @@ -60220,7 +75964,10 @@ "plasmid_name": "C121-E01: rLuc", "sequence-type": "addgene-full", "addgene_id": "162888", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -60232,7 +75979,10 @@ "plasmid_name": "pDONR223_STK3_WT", "sequence-type": "addgene-full", "addgene_id": "82319", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82319.addgene-full.gb" }, @@ -60241,7 +75991,10 @@ "plasmid_name": "pDL216", "sequence-type": "addgene-full", "addgene_id": "175922", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175922.addgene-full.gb" }, @@ -60250,7 +76003,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aac.3", "sequence-type": "addgene-full", "addgene_id": "136377", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136377.addgene-full.gb" }, @@ -60259,7 +76015,10 @@ "plasmid_name": "pZA11", "sequence-type": "addgene-full", "addgene_id": "158489", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158489.addgene-full.gb" }, @@ -60268,7 +76027,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab6b", "sequence-type": "addgene-full", "addgene_id": "166427", - "references": [], "kit": null, "file": "data/addgene_plasmids/166427.addgene-full.gb" }, @@ -60277,7 +76035,6 @@ "plasmid_name": "p35S:TN3-YFPn", "sequence-type": "addgene-full", "addgene_id": "102407", - "references": [], "kit": null, "file": "data/addgene_plasmids/102407.addgene-full.gb" }, @@ -60286,7 +76043,10 @@ "plasmid_name": "645 pCS2-etv2", "sequence-type": "depositor-full", "addgene_id": "49005", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49005.depositor-full.gb" }, @@ -60295,7 +76055,6 @@ "plasmid_name": "pDONR221-B3GALT5", "sequence-type": "addgene-full", "addgene_id": "192719", - "references": [], "kit": null, "file": "data/addgene_plasmids/192719.addgene-full.gb" }, @@ -60304,7 +76063,10 @@ "plasmid_name": "pENTR eGFPCreERT2 L1-R5", "sequence-type": "depositor-full", "addgene_id": "43961", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "file": "data/addgene_plasmids/43961.depositor-full.gb" }, @@ -60313,7 +76075,6 @@ "plasmid_name": "pAG416GAL-DENV_NS3-GS-NS2B", "sequence-type": "addgene-full", "addgene_id": "201940", - "references": [], "kit": null, "file": "data/addgene_plasmids/201940.addgene-full.gb" }, @@ -60322,7 +76083,6 @@ "plasmid_name": "IDG_TMEM63C_OE_1", "sequence-type": "addgene-full", "addgene_id": "161695", - "references": [], "kit": null, "file": "data/addgene_plasmids/161695.addgene-full.gb" }, @@ -60331,7 +76091,6 @@ "plasmid_name": "p667-UBC-CDK12-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135245", - "references": [], "kit": null, "file": "data/addgene_plasmids/135245.addgene-full.gb" }, @@ -60340,7 +76099,10 @@ "plasmid_name": "pAG425GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14298", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -60352,7 +76114,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-UD", "sequence-type": "addgene-full", "addgene_id": "140304", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140304.addgene-full.gb" }, @@ -60361,7 +76126,10 @@ "plasmid_name": "pDRM55 tet-AR(1-707)", "sequence-type": "addgene-full", "addgene_id": "183503", - "references": [], + "references": [ + "https://doi.org/10.1038/s41591-020-01168-7", + "https://www.ncbi.nlm.nih.gov/pubmed/33462444" + ], "kit": null, "file": "data/addgene_plasmids/183503.addgene-full.gb" }, @@ -60370,7 +76138,10 @@ "plasmid_name": "pSC29", "sequence-type": "addgene-full", "addgene_id": "104803", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104803.addgene-full.gb" }, @@ -60379,7 +76150,10 @@ "plasmid_name": "pMx/ATP11A(E186Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209261", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209261.addgene-full.gb" }, @@ -60388,7 +76162,10 @@ "plasmid_name": "pTW122", "sequence-type": "addgene-full", "addgene_id": "115962", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115962.addgene-full.gb" }, @@ -60397,7 +76174,6 @@ "plasmid_name": "pENTR-DsRedT4", "sequence-type": "addgene-full", "addgene_id": "139550", - "references": [], "kit": null, "file": "data/addgene_plasmids/139550.addgene-full.gb" }, @@ -60406,7 +76182,10 @@ "plasmid_name": "pDONR_P4-P1R:PER36modp", "sequence-type": "addgene-full", "addgene_id": "128431", - "references": [], + "references": [ + "https://doi.org/10.1007/s11103-019-00909-8", + "https://www.ncbi.nlm.nih.gov/pubmed/31422517" + ], "kit": null, "file": "data/addgene_plasmids/128431.addgene-full.gb" }, @@ -60415,7 +76194,9 @@ "plasmid_name": "pDONR221_zCas9", "sequence-type": "addgene-full", "addgene_id": "213913", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.5029" + ], "kit": null, "file": "data/addgene_plasmids/213913.addgene-full.gb" }, @@ -60424,7 +76205,10 @@ "plasmid_name": "pME minprom KalTa4", "sequence-type": "addgene-full", "addgene_id": "195964", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195964.addgene-full.gb" }, @@ -60433,7 +76217,6 @@ "plasmid_name": "BRAF - S467A in pENTR", "sequence-type": "addgene-full", "addgene_id": "216611", - "references": [], "kit": null, "file": "data/addgene_plasmids/216611.addgene-full.gb" }, @@ -60442,7 +76225,6 @@ "plasmid_name": "pAG426-GAL-Kar2-Beta-Amyloid", "sequence-type": "addgene-full", "addgene_id": "181707", - "references": [], "kit": null, "file": "data/addgene_plasmids/181707.addgene-full.gb" }, @@ -60451,7 +76233,10 @@ "plasmid_name": "pLD-puro-Cc-PRDX5K83R-VA", "sequence-type": "addgene-full", "addgene_id": "98690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "file": "data/addgene_plasmids/98690.addgene-full.gb" }, @@ -60460,7 +76245,10 @@ "plasmid_name": "pLX307 hcRed1", "sequence-type": "addgene-full", "addgene_id": "117732", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117732.addgene-full.gb" }, @@ -60469,7 +76257,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0383-luc2", "sequence-type": "addgene-full", "addgene_id": "214621", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214621.addgene-full.gb" }, @@ -60478,7 +76269,10 @@ "plasmid_name": "pDONR223_HIF1AN_WT", "sequence-type": "addgene-full", "addgene_id": "82256", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82256.addgene-full.gb" }, @@ -60487,7 +76281,10 @@ "plasmid_name": "pENTR_L1-miniTurbo-NES-YFP-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127359", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127359.addgene-full.gb" }, @@ -60496,7 +76293,10 @@ "plasmid_name": "pMXs-mGLIS1", "sequence-type": "depositor-full", "addgene_id": "33273", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10106", + "https://www.ncbi.nlm.nih.gov/pubmed/21654807" + ], "kit": null, "file": "data/addgene_plasmids/33273.depositor-full.gb" }, @@ -60505,7 +76305,10 @@ "plasmid_name": "pME-mKate2-P2A-TurboID-NS", "sequence-type": "addgene-full", "addgene_id": "166568", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "file": "data/addgene_plasmids/166568.addgene-full.gb" }, @@ -60514,7 +76317,10 @@ "plasmid_name": "pWS497", "sequence-type": "addgene-full", "addgene_id": "123042", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123042.addgene-full.gb" }, @@ -60523,7 +76329,10 @@ "plasmid_name": "pDONR221_SLC35A4", "sequence-type": "addgene-full", "addgene_id": "132123", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132123.addgene-full.gb" }, @@ -60532,7 +76341,9 @@ "plasmid_name": "pcDNA5-3xFLAG-TAF5-FL_WobbleMut", "sequence-type": "addgene-full", "addgene_id": "209055", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209055.addgene-full.gb" }, @@ -60541,7 +76352,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp9", "sequence-type": "depositor-full", "addgene_id": "168822", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168822.depositor-full.gb" }, @@ -60550,7 +76364,10 @@ "plasmid_name": "pHAGE-PTEN-R130G", "sequence-type": "addgene-full", "addgene_id": "116630", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116630.addgene-full.gb" }, @@ -60559,7 +76376,10 @@ "plasmid_name": "pENTR-L1-U6-BsmBI-R5", "sequence-type": "addgene-full", "addgene_id": "141032", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141032.addgene-full.gb" }, @@ -60568,7 +76388,10 @@ "plasmid_name": "LI C-D Dest", "sequence-type": "addgene-full", "addgene_id": "104518", - "references": [], + "references": [ + "https://doi.org/10.1111/mpp.12632", + "https://www.ncbi.nlm.nih.gov/pubmed/29077245" + ], "kit": null, "file": "data/addgene_plasmids/104518.addgene-full.gb" }, @@ -60577,7 +76400,6 @@ "plasmid_name": "R777-E281 Hs.RHOC", "sequence-type": "depositor-full", "addgene_id": "70565", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -60589,7 +76411,10 @@ "plasmid_name": "3xflag-APEX2-NES", "sequence-type": "addgene-full", "addgene_id": "164623", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164623.addgene-full.gb" }, @@ -60598,7 +76423,10 @@ "plasmid_name": "pCellFree_G03 TFAP2B", "sequence-type": "addgene-full", "addgene_id": "67092", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "file": "data/addgene_plasmids/67092.addgene-full.gb" }, @@ -60607,7 +76435,10 @@ "plasmid_name": "pDESTmycMOV10", "sequence-type": "depositor-full", "addgene_id": "19875", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19875.depositor-full.gb" }, @@ -60616,7 +76447,6 @@ "plasmid_name": "g4s pD42", "sequence-type": "addgene-full", "addgene_id": "117449", - "references": [], "kit": null, "file": "data/addgene_plasmids/117449.addgene-full.gb" }, @@ -60625,7 +76455,10 @@ "plasmid_name": "pDEST/hCx43-EGFP-N1", "sequence-type": "addgene-full", "addgene_id": "40907", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.111.257964", + "https://www.ncbi.nlm.nih.gov/pubmed/22328533" + ], "kit": null, "file": "data/addgene_plasmids/40907.addgene-full.gb" }, @@ -60634,7 +76467,10 @@ "plasmid_name": "pDONR223_GPR141_p.T6N", "sequence-type": "addgene-full", "addgene_id": "81364", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -60646,7 +76482,10 @@ "plasmid_name": "pENTR-R4R3-mRuby-N", "sequence-type": "addgene-full", "addgene_id": "113752", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -60658,7 +76497,10 @@ "plasmid_name": "pENTR223-PLXNB2", "sequence-type": "addgene-full", "addgene_id": "86236", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "file": "data/addgene_plasmids/86236.addgene-full.gb" }, @@ -60667,7 +76509,10 @@ "plasmid_name": "TBX5-FLAG in pLX303", "sequence-type": "addgene-full", "addgene_id": "42563", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/23245941" + ], "kit": null, "file": "data/addgene_plasmids/42563.addgene-full.gb" }, @@ -60676,7 +76521,10 @@ "plasmid_name": "pDONR221-SLC9C2_STOP", "sequence-type": "depositor-full", "addgene_id": "161330", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161330.depositor-full.gb" }, @@ -60685,7 +76533,10 @@ "plasmid_name": "pDONR223-ERBB4", "sequence-type": "addgene-full", "addgene_id": "23875", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -60697,7 +76548,10 @@ "plasmid_name": "pDONR221_UCP3", "sequence-type": "addgene-full", "addgene_id": "132258", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132258.addgene-full.gb" }, @@ -60706,7 +76560,6 @@ "plasmid_name": "pDONR221-ets2", "sequence-type": "addgene-full", "addgene_id": "192724", - "references": [], "kit": null, "file": "data/addgene_plasmids/192724.addgene-full.gb" }, @@ -60715,7 +76568,10 @@ "plasmid_name": "SYMPK", "sequence-type": "addgene-full", "addgene_id": "156071", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156071.addgene-full.gb" }, @@ -60724,7 +76580,10 @@ "plasmid_name": "pDONR221_SLC25A22", "sequence-type": "addgene-full", "addgene_id": "132051", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132051.addgene-full.gb" }, @@ -60733,7 +76592,10 @@ "plasmid_name": "pMpGE_En03-sgRNA_Target2 (Mpphot)", "sequence-type": "addgene-full", "addgene_id": "186727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bbrc.2018.06.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29885839" + ], "kit": null, "file": "data/addgene_plasmids/186727.addgene-full.gb" }, @@ -60742,7 +76604,10 @@ "plasmid_name": "pHAGE-NOTCH2NL-G137L", "sequence-type": "addgene-full", "addgene_id": "116439", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116439.addgene-full.gb" }, @@ -60751,7 +76616,10 @@ "plasmid_name": "MAC-IFITM3", "sequence-type": "addgene-full", "addgene_id": "172419", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172419.addgene-full.gb" }, @@ -60760,7 +76628,6 @@ "plasmid_name": "pAG416GAL-1x-ccdB-6stop", "sequence-type": "addgene-full", "addgene_id": "203519", - "references": [], "kit": null, "file": "data/addgene_plasmids/203519.addgene-full.gb" }, @@ -60769,7 +76636,9 @@ "plasmid_name": "pDEST17-LAP3", "sequence-type": "addgene-full", "addgene_id": "217661", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-4644671/v1" + ], "kit": null, "file": "data/addgene_plasmids/217661.addgene-full.gb" }, @@ -60778,7 +76647,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-GFP (gRNA: Ascl1-1)", "sequence-type": "addgene-full", "addgene_id": "159656", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/159656.addgene-full.gb" }, @@ -60787,7 +76659,10 @@ "plasmid_name": "pHD57 [Tol2-UAS:sypb-egfp-cry2-polyA]", "sequence-type": "addgene-full", "addgene_id": "198381", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-35324-z", + "https://www.ncbi.nlm.nih.gov/pubmed/36535932" + ], "kit": null, "file": "data/addgene_plasmids/198381.addgene-full.gb" }, @@ -60796,7 +76671,10 @@ "plasmid_name": "pLX304-EZH1-Y727F", "sequence-type": "addgene-full", "addgene_id": "203582", - "references": [], + "references": [ + "https://doi.org/10.1126/scitranslmed.aal5272", + "https://www.ncbi.nlm.nih.gov/pubmed/28701475" + ], "kit": null, "file": "data/addgene_plasmids/203582.addgene-full.gb" }, @@ -60805,7 +76683,6 @@ "plasmid_name": "pHAGE-CMV-Flag-TLK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135278", - "references": [], "kit": null, "file": "data/addgene_plasmids/135278.addgene-full.gb" }, @@ -60814,7 +76691,6 @@ "plasmid_name": "IDG_FXYD3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161633", - "references": [], "kit": null, "file": "data/addgene_plasmids/161633.addgene-full.gb" }, @@ -60823,7 +76699,6 @@ "plasmid_name": "pEN_TT CXADR-V5", "sequence-type": "addgene-full", "addgene_id": "220358", - "references": [], "kit": null, "file": "data/addgene_plasmids/220358.addgene-full.gb" }, @@ -60832,7 +76707,10 @@ "plasmid_name": "pGWB522", "sequence-type": "depositor-full", "addgene_id": "74864", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74864.depositor-full.gb" }, @@ -60841,7 +76719,10 @@ "plasmid_name": "pDONR223-SYK", "sequence-type": "addgene-full", "addgene_id": "23907", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -60853,7 +76734,10 @@ "plasmid_name": "pGC245", "sequence-type": "depositor-full", "addgene_id": "19638", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19638.depositor-full.gb" }, @@ -60862,7 +76746,10 @@ "plasmid_name": "p221z-dCAS9p-t35s", "sequence-type": "addgene-full", "addgene_id": "118387", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "file": "data/addgene_plasmids/118387.addgene-full.gb" }, @@ -60871,7 +76758,10 @@ "plasmid_name": "pHAGE-FGFR3", "sequence-type": "addgene-full", "addgene_id": "116742", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116742.addgene-full.gb" }, @@ -60880,7 +76770,10 @@ "plasmid_name": "pSGE_574_S2-3-GATA_dCP", "sequence-type": "depositor-full", "addgene_id": "71157", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71157.depositor-full.gb" }, @@ -60889,7 +76782,6 @@ "plasmid_name": "pCSIIbleo-iRFP713(V256C)-P2A-EGFP", "sequence-type": "addgene-full", "addgene_id": "198061", - "references": [], "kit": null, "file": "data/addgene_plasmids/198061.addgene-full.gb" }, @@ -60898,7 +76790,10 @@ "plasmid_name": "pDONRPEX18Km-SceI-pheS", "sequence-type": "addgene-full", "addgene_id": "111610", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.03909-14", + "https://www.ncbi.nlm.nih.gov/pubmed/25795676" + ], "kit": null, "file": "data/addgene_plasmids/111610.addgene-full.gb" }, @@ -60907,7 +76802,6 @@ "plasmid_name": "R777-E071 Hs.EXOC3", "sequence-type": "depositor-full", "addgene_id": "70355", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -60919,7 +76813,10 @@ "plasmid_name": "pSN001 pME minprom_mCerulean", "sequence-type": "addgene-full", "addgene_id": "195959", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195959.addgene-full.gb" }, @@ -60928,7 +76825,10 @@ "plasmid_name": "pDEST1K18ms", "sequence-type": "depositor-full", "addgene_id": "72646", - "references": [], + "references": [ + "https://doi.org/10.1094/PHYTO-02-21-0057-R", + "https://www.ncbi.nlm.nih.gov/pubmed/34032522" + ], "kit": null, "file": "data/addgene_plasmids/72646.depositor-full.gb" }, @@ -60937,7 +76837,10 @@ "plasmid_name": "pLenti-PGK-Hygro-PIP-FUCCI", "sequence-type": "addgene-full", "addgene_id": "138714", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "file": "data/addgene_plasmids/138714.addgene-full.gb" }, @@ -60946,7 +76849,10 @@ "plasmid_name": "pYPQ290-E848A", "sequence-type": "addgene-full", "addgene_id": "129675", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129675.addgene-full.gb" }, @@ -60955,7 +76861,10 @@ "plasmid_name": "pHAGE-PIK3CG-D192G", "sequence-type": "addgene-full", "addgene_id": "116576", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116576.addgene-full.gb" }, @@ -60964,7 +76873,10 @@ "plasmid_name": "tetO-FHL2", "sequence-type": "addgene-full", "addgene_id": "170686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170686.addgene-full.gb" }, @@ -60973,7 +76885,10 @@ "plasmid_name": "p413TEF1-ATR1(pYL573)", "sequence-type": "addgene-full", "addgene_id": "178288", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178288.addgene-full.gb" }, @@ -60982,7 +76897,10 @@ "plasmid_name": "pDONR221-SLC5A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161407", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161407.addgene-full.gb" }, @@ -60991,7 +76909,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-let-7", "sequence-type": "depositor-full", "addgene_id": "46662", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46662.depositor-full.gb" }, @@ -61000,7 +76921,10 @@ "plasmid_name": "pLenti CMV GFP DEST (736-1)", "sequence-type": "addgene-full", "addgene_id": "19732", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/19732.addgene-full.gb" }, @@ -61009,7 +76933,10 @@ "plasmid_name": "pT2-cryR;dll4CE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90143", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90143.addgene-full.gb" }, @@ -61018,7 +76945,10 @@ "plasmid_name": "pRQ-hRasV12", "sequence-type": "depositor-full", "addgene_id": "18113", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0801505105", + "https://www.ncbi.nlm.nih.gov/pubmed/18378907" + ], "kit": null, "file": "data/addgene_plasmids/18113.depositor-full.gb" }, @@ -61027,7 +76957,10 @@ "plasmid_name": "Active Wnt2B-V5", "sequence-type": "addgene-full", "addgene_id": "43808", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43808.addgene-full.gb" }, @@ -61048,7 +76981,10 @@ "plasmid_name": "pENTR223-CMV-Cre-U6-sgNotch1#1-U6-sgRb1-U6-sgTrp53-U6-sgRbl2", "sequence-type": "addgene-full", "addgene_id": "209068", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-21-1991", + "https://www.ncbi.nlm.nih.gov/pubmed/34810201" + ], "kit": null, "file": "data/addgene_plasmids/209068.addgene-full.gb" }, @@ -61057,7 +76993,10 @@ "plasmid_name": "pHAGE-TGFB1-P10L", "sequence-type": "addgene-full", "addgene_id": "116696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116696.addgene-full.gb" }, @@ -61066,7 +77005,6 @@ "plasmid_name": "pLIX403-ccdB-Blast", "sequence-type": "addgene-full", "addgene_id": "158560", - "references": [], "kit": null, "file": "data/addgene_plasmids/158560.addgene-full.gb" }, @@ -61075,7 +77013,10 @@ "plasmid_name": "pENTR221-CCL5.Pro", "sequence-type": "addgene-full", "addgene_id": "79492", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79492.addgene-full.gb" }, @@ -61084,7 +77025,10 @@ "plasmid_name": "pcDNA3.1_nV5-AMOTL2", "sequence-type": "addgene-full", "addgene_id": "172999", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172999.addgene-full.gb" }, @@ -61093,7 +77037,9 @@ "plasmid_name": "pLX317-MBNL2", "sequence-type": "addgene-full", "addgene_id": "115444", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "file": "data/addgene_plasmids/115444.addgene-full.gb" }, @@ -61102,7 +77048,10 @@ "plasmid_name": "pDONR221_SLC7A4", "sequence-type": "addgene-full", "addgene_id": "132185", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132185.addgene-full.gb" }, @@ -61111,7 +77060,10 @@ "plasmid_name": "pENTR223-LMP2A", "sequence-type": "addgene-full", "addgene_id": "195816", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195816.addgene-full.gb" }, @@ -61120,7 +77072,10 @@ "plasmid_name": "pGC249", "sequence-type": "depositor-full", "addgene_id": "19676", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19676.depositor-full.gb" }, @@ -61129,7 +77084,10 @@ "plasmid_name": "pLenti6.2-3xFLAG-V5-ccdB", "sequence-type": "addgene-full", "addgene_id": "87072", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.05.039", + "https://www.ncbi.nlm.nih.gov/pubmed/25036637" + ], "kit": null, "file": "data/addgene_plasmids/87072.addgene-full.gb" }, @@ -61138,7 +77096,10 @@ "plasmid_name": "Flag-HA-USP48", "sequence-type": "addgene-full", "addgene_id": "22585", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22585.addgene-full.gb" }, @@ -61147,7 +77108,6 @@ "plasmid_name": "R777-E197 Hs.PRKAB2", "sequence-type": "depositor-full", "addgene_id": "70481", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -61159,7 +77119,10 @@ "plasmid_name": "C514-E42: attB5r-RU5u-Strep2-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162961", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -61171,7 +77134,10 @@ "plasmid_name": "pAG306GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14332", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -61183,7 +77149,10 @@ "plasmid_name": "pLentiPGK Puro DEST JNKKTR AA Clover", "sequence-type": "addgene-full", "addgene_id": "90238", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "file": "data/addgene_plasmids/90238.addgene-full.gb" }, @@ -61192,7 +77161,10 @@ "plasmid_name": "pDEST-FRT/T0-GFP-BRCA1 1364-1437", "sequence-type": "depositor-full", "addgene_id": "71119", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71119.depositor-full.gb" }, @@ -61201,7 +77173,10 @@ "plasmid_name": "pDONR223_DVL1_WT", "sequence-type": "addgene-full", "addgene_id": "82110", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82110.addgene-full.gb" }, @@ -61210,7 +77185,10 @@ "plasmid_name": "p8291 MSCV-Neo C-HA 18E7 \u0394DLLC", "sequence-type": "addgene-full", "addgene_id": "184523", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184523.addgene-full.gb" }, @@ -61219,7 +77197,10 @@ "plasmid_name": "pDONR223_PRR23B_p.A246T", "sequence-type": "addgene-full", "addgene_id": "81359", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -61231,7 +77212,10 @@ "plasmid_name": "MAC_N_TBR1", "sequence-type": "addgene-full", "addgene_id": "167803", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167803.addgene-full.gb" }, @@ -61240,7 +77224,10 @@ "plasmid_name": "pSLIK-Hygro", "sequence-type": "addgene-full", "addgene_id": "25737", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0606179103", + "https://www.ncbi.nlm.nih.gov/pubmed/16945906" + ], "kit": null, "file": "data/addgene_plasmids/25737.addgene-full.gb" }, @@ -61249,7 +77236,10 @@ "plasmid_name": "pDONR221_SLC14A2", "sequence-type": "addgene-full", "addgene_id": "132265", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132265.addgene-full.gb" }, @@ -61258,7 +77248,10 @@ "plasmid_name": "TFORF3531", "sequence-type": "depositor-full", "addgene_id": "145007", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145007.depositor-full.gb" }, @@ -61267,7 +77260,10 @@ "plasmid_name": "pLenti CMV-SLC7A11-sh926R-FLAG-IRES-Hygro", "sequence-type": "addgene-full", "addgene_id": "118702", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.042", + "https://www.ncbi.nlm.nih.gov/pubmed/27368101" + ], "kit": null, "file": "data/addgene_plasmids/118702.addgene-full.gb" }, @@ -61276,7 +77272,10 @@ "plasmid_name": "TFORF3271", "sequence-type": "addgene-full", "addgene_id": "144747", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144747.addgene-full.gb" }, @@ -61285,7 +77284,10 @@ "plasmid_name": "p3E-rab11al", "sequence-type": "addgene-full", "addgene_id": "109663", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109663.addgene-full.gb" }, @@ -61294,7 +77296,6 @@ "plasmid_name": "pENTR223 Rab11A Q70L-STOP", "sequence-type": "addgene-full", "addgene_id": "228033", - "references": [], "kit": null, "file": "data/addgene_plasmids/228033.addgene-full.gb" }, @@ -61303,7 +77304,10 @@ "plasmid_name": "pDONR221-SLC24A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161156", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161156.addgene-full.gb" }, @@ -61312,7 +77316,6 @@ "plasmid_name": "pUC-L1L2", "sequence-type": "addgene-full", "addgene_id": "114017", - "references": [], "kit": null, "file": "data/addgene_plasmids/114017.addgene-full.gb" }, @@ -61321,7 +77324,10 @@ "plasmid_name": "pDONR223_RASA1_p.R194C", "sequence-type": "addgene-full", "addgene_id": "81573", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -61333,7 +77339,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_F3194S", "sequence-type": "addgene-full", "addgene_id": "187140", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187140.addgene-full.gb" }, @@ -61342,7 +77351,10 @@ "plasmid_name": "pDONR223_PTEN_p.F90S", "sequence-type": "addgene-full", "addgene_id": "81693", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -61354,7 +77366,6 @@ "plasmid_name": "p41Hyg 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58547", - "references": [], "kit": null, "file": "data/addgene_plasmids/58547.depositor-full.gb" }, @@ -61363,7 +77374,10 @@ "plasmid_name": "p8224 pLIX-PTPN14 \u0394PPXY1/2", "sequence-type": "addgene-full", "addgene_id": "221644", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "file": "data/addgene_plasmids/221644.addgene-full.gb" }, @@ -61372,7 +77386,10 @@ "plasmid_name": "5'-3xFLAG Mllt1-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212066", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212066.addgene-full.gb" }, @@ -61381,7 +77398,10 @@ "plasmid_name": "p3E-CDC42", "sequence-type": "addgene-full", "addgene_id": "109583", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109583.addgene-full.gb" }, @@ -61390,7 +77410,9 @@ "plasmid_name": "p3E-CMVmin:GFPmem no-pA", "sequence-type": "depositor-full", "addgene_id": "80824", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80824.depositor-full.gb" }, @@ -61399,7 +77421,10 @@ "plasmid_name": "pAG303GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14206", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -61411,7 +77436,10 @@ "plasmid_name": "pGL3-MTS-G3635A-L17-FZY2-S100N-UGI-Puro", "sequence-type": "addgene-full", "addgene_id": "209642", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-42359-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37857619" + ], "kit": null, "file": "data/addgene_plasmids/209642.addgene-full.gb" }, @@ -61420,7 +77448,10 @@ "plasmid_name": "actc1b-Cav3-mKate2", "sequence-type": "addgene-full", "addgene_id": "109518", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109518.addgene-full.gb" }, @@ -61429,7 +77460,6 @@ "plasmid_name": "pEF 1-35S-4", "sequence-type": "depositor-full", "addgene_id": "20091", - "references": [], "kit": null, "file": "data/addgene_plasmids/20091.depositor-full.gb" }, @@ -61438,7 +77468,10 @@ "plasmid_name": "RBM14_pLX307", "sequence-type": "addgene-full", "addgene_id": "98367", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98367.addgene-full.gb" }, @@ -61447,7 +77480,10 @@ "plasmid_name": "pDONR223_CYLC2_p.D299Y", "sequence-type": "addgene-full", "addgene_id": "81608", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -61459,7 +77495,9 @@ "plasmid_name": "pMpGWB333", "sequence-type": "depositor-full", "addgene_id": "68661", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68661.depositor-full.gb" }, @@ -61468,7 +77506,10 @@ "plasmid_name": "pDONR223-ZNF616", "sequence-type": "addgene-full", "addgene_id": "87977", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/87977.addgene-full.gb" }, @@ -61477,7 +77518,10 @@ "plasmid_name": "pDONR223_PTEN_p.H123Y", "sequence-type": "addgene-full", "addgene_id": "82815", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82815.addgene-full.gb" }, @@ -61486,7 +77530,10 @@ "plasmid_name": "pJA256", "sequence-type": "depositor-full", "addgene_id": "21509", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "file": "data/addgene_plasmids/21509.depositor-full.gb" }, @@ -61495,7 +77542,6 @@ "plasmid_name": "pLenti6.3/EV", "sequence-type": "addgene-full", "addgene_id": "120848", - "references": [], "kit": null, "file": "data/addgene_plasmids/120848.addgene-full.gb" }, @@ -61504,7 +77550,10 @@ "plasmid_name": "pDONR221_MFSD4B", "sequence-type": "addgene-full", "addgene_id": "131929", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131929.addgene-full.gb" }, @@ -61513,7 +77562,6 @@ "plasmid_name": "pGW_RUBY_EggCas9", "sequence-type": "addgene-full", "addgene_id": "225990", - "references": [], "kit": null, "file": "data/addgene_plasmids/225990.addgene-full.gb" }, @@ -61522,7 +77570,10 @@ "plasmid_name": "A3Bmax", "sequence-type": "addgene-full", "addgene_id": "207167", - "references": [], + "references": [ + "https://doi.org/10.1089/crispr.2023.0027", + "https://www.ncbi.nlm.nih.gov/pubmed/37672599" + ], "kit": null, "file": "data/addgene_plasmids/207167.addgene-full.gb" }, @@ -61531,7 +77582,10 @@ "plasmid_name": "pPMW-attB", "sequence-type": "depositor-full", "addgene_id": "61814", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1007498", + "https://www.ncbi.nlm.nih.gov/pubmed/29995890" + ], "kit": null, "file": "data/addgene_plasmids/61814.depositor-full.gb" }, @@ -61540,7 +77594,10 @@ "plasmid_name": "TFORF3392", "sequence-type": "addgene-full", "addgene_id": "144868", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144868.addgene-full.gb" }, @@ -61549,7 +77606,9 @@ "plasmid_name": "pPB-cT3G-cERP2-TERF1", "sequence-type": "addgene-full", "addgene_id": "222542", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222542.addgene-full.gb" }, @@ -61558,7 +77617,10 @@ "plasmid_name": "pHAGE-BRAF-K601E", "sequence-type": "addgene-full", "addgene_id": "116168", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116168.addgene-full.gb" }, @@ -61567,7 +77629,10 @@ "plasmid_name": "pYZ675", "sequence-type": "addgene-full", "addgene_id": "132954", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkaa329", + "https://www.ncbi.nlm.nih.gov/pubmed/32374858" + ], "kit": null, "file": "data/addgene_plasmids/132954.addgene-full.gb" }, @@ -61576,7 +77641,6 @@ "plasmid_name": "pLEX_307", "sequence-type": "addgene-full", "addgene_id": "41392", - "references": [], "kit": null, "file": "data/addgene_plasmids/41392.addgene-full.gb" }, @@ -61585,7 +77649,10 @@ "plasmid_name": "TFORF3132", "sequence-type": "addgene-full", "addgene_id": "144608", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144608.addgene-full.gb" }, @@ -61594,7 +77661,10 @@ "plasmid_name": "pHAGE-EGFR-P772R", "sequence-type": "addgene-full", "addgene_id": "116288", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116288.addgene-full.gb" }, @@ -61603,7 +77673,10 @@ "plasmid_name": "KA601: pMVP (L3-L2) pA; EF1a::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121805", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121805.addgene-full.gb" }, @@ -61612,7 +77685,10 @@ "plasmid_name": "ATX3-D1", "sequence-type": "addgene-full", "addgene_id": "184246", - "references": [], + "references": [ + "https://doi.org/10.3390/cells11121969", + "https://www.ncbi.nlm.nih.gov/pubmed/35741099" + ], "kit": null, "file": "data/addgene_plasmids/184246.addgene-full.gb" }, @@ -61621,7 +77697,10 @@ "plasmid_name": "pDONR221-MFSD1_STOP", "sequence-type": "addgene-full", "addgene_id": "161082", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161082.addgene-full.gb" }, @@ -61630,7 +77709,9 @@ "plasmid_name": "nTALECD for_CYO1 exon2_1397NC", "sequence-type": "addgene-full", "addgene_id": "193377", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "file": "data/addgene_plasmids/193377.addgene-full.gb" }, @@ -61639,7 +77720,10 @@ "plasmid_name": "pDONR223_mCherry", "sequence-type": "addgene-full", "addgene_id": "221470", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221470.addgene-full.gb" }, @@ -61648,7 +77732,10 @@ "plasmid_name": "pAG424GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14248", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -61660,7 +77747,10 @@ "plasmid_name": "pDONR221_SLCO2B1", "sequence-type": "addgene-full", "addgene_id": "131866", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131866.addgene-full.gb" }, @@ -61669,7 +77759,10 @@ "plasmid_name": "TFORF3217", "sequence-type": "addgene-full", "addgene_id": "144693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144693.addgene-full.gb" }, @@ -61678,7 +77771,10 @@ "plasmid_name": "pENTR-L3-LucmiR-EGFP-L2", "sequence-type": "depositor-full", "addgene_id": "32588", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32588.depositor-full.gb" }, @@ -61687,7 +77783,10 @@ "plasmid_name": "p3E-ML1N*2", "sequence-type": "depositor-full", "addgene_id": "67678", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67678.depositor-full.gb" }, @@ -61696,7 +77795,10 @@ "plasmid_name": "TFORF3451", "sequence-type": "addgene-full", "addgene_id": "144927", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144927.addgene-full.gb" }, @@ -61705,7 +77807,10 @@ "plasmid_name": "PRPF18", "sequence-type": "addgene-full", "addgene_id": "155846", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155846.addgene-full.gb" }, @@ -61714,7 +77819,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp16", "sequence-type": "addgene-full", "addgene_id": "168941", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168941.addgene-full.gb" }, @@ -61723,7 +77831,10 @@ "plasmid_name": "TFORF3097", "sequence-type": "addgene-full", "addgene_id": "144573", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144573.addgene-full.gb" }, @@ -61732,7 +77843,10 @@ "plasmid_name": "pFLAG/HA-TNRC6B", "sequence-type": "depositor-full", "addgene_id": "10979", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2005.10.048", + "https://www.ncbi.nlm.nih.gov/pubmed/16289642" + ], "kit": null, "file": "data/addgene_plasmids/10979.depositor-full.gb" }, @@ -61741,7 +77855,10 @@ "plasmid_name": "pDONR223_IRF4_WT", "sequence-type": "addgene-full", "addgene_id": "81747", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -61765,7 +77882,9 @@ "plasmid_name": "pME-3xHA-BirA-T2A-mCherry-caax (JDW 889)", "sequence-type": "addgene-full", "addgene_id": "224512", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224512.addgene-full.gb" }, @@ -61774,7 +77893,10 @@ "plasmid_name": "R620-M19-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-529)-3C-His8-SBP K417T/E484K/N501Y", "sequence-type": "addgene-full", "addgene_id": "170203", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/170203.addgene-full.gb" }, @@ -61783,7 +77905,10 @@ "plasmid_name": "pDONR221-SLC6A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161362", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161362.addgene-full.gb" }, @@ -61792,7 +77917,9 @@ "plasmid_name": "pMpGWB124", "sequence-type": "depositor-full", "addgene_id": "68578", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68578.depositor-full.gb" }, @@ -61801,7 +77928,10 @@ "plasmid_name": "pEN_TT Linker", "sequence-type": "addgene-full", "addgene_id": "192307", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192307.addgene-full.gb" }, @@ -61810,7 +77940,6 @@ "plasmid_name": "Hs.KRAS4b S181A", "sequence-type": "depositor-full", "addgene_id": "83136", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -61822,7 +77951,10 @@ "plasmid_name": "BCL6-GFP in Artichoke", "sequence-type": "addgene-full", "addgene_id": "169931", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2925-1", + "https://www.ncbi.nlm.nih.gov/pubmed/33208943" + ], "kit": null, "file": "data/addgene_plasmids/169931.addgene-full.gb" }, @@ -61831,7 +77963,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf8", "sequence-type": "addgene-full", "addgene_id": "158377", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158377.addgene-full.gb" }, @@ -61840,7 +77975,6 @@ "plasmid_name": "pLPC-C-SF-TAP-DEST-TLK1- M566T", "sequence-type": "addgene-full", "addgene_id": "218831", - "references": [], "kit": null, "file": "data/addgene_plasmids/218831.addgene-full.gb" }, @@ -61849,7 +77983,10 @@ "plasmid_name": "actc1b-mKate2-RhoAa", "sequence-type": "addgene-full", "addgene_id": "109525", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109525.addgene-full.gb" }, @@ -61858,7 +77995,10 @@ "plasmid_name": "PB-TET-mSox2", "sequence-type": "depositor-full", "addgene_id": "20908", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "file": "data/addgene_plasmids/20908.depositor-full.gb" }, @@ -61867,7 +78007,10 @@ "plasmid_name": "453 pCSMTN5ICD", "sequence-type": "depositor-full", "addgene_id": "22466", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/22466.depositor-full.gb" }, @@ -61876,7 +78019,10 @@ "plasmid_name": "pEntry_MERS-CoV-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168833", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168833.addgene-full.gb" }, @@ -61885,7 +78031,6 @@ "plasmid_name": "R777-E167 Hs.PIK3CD", "sequence-type": "depositor-full", "addgene_id": "70451", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -61897,7 +78042,10 @@ "plasmid_name": "pDEST-CMV-3xFLAG-gateway-EGFP", "sequence-type": "addgene-full", "addgene_id": "122845", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/122845.addgene-full.gb" }, @@ -61906,7 +78054,10 @@ "plasmid_name": "pDONR221-SLC26A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161210", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161210.addgene-full.gb" }, @@ -61915,7 +78066,10 @@ "plasmid_name": "pENTR-D-kcnj10b", "sequence-type": "addgene-full", "addgene_id": "173138", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173138.addgene-full.gb" }, @@ -61924,7 +78078,10 @@ "plasmid_name": "pMuLE ENTR 7SK L1-R5", "sequence-type": "depositor-full", "addgene_id": "62106", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62106.depositor-full.gb" }, @@ -61933,7 +78090,9 @@ "plasmid_name": "pRRLHygro-pEF1a-p53ashL344P-mKate2-splitmVenusC", "sequence-type": "depositor-full", "addgene_id": "69587", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25344068" + ], "kit": null, "file": "data/addgene_plasmids/69587.depositor-full.gb" }, @@ -61942,7 +78101,10 @@ "plasmid_name": "pCM1.26", "sequence-type": "depositor-full", "addgene_id": "21377", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21377.depositor-full.gb" }, @@ -61951,7 +78113,10 @@ "plasmid_name": "pDONR223_OR2M2_p.P182S", "sequence-type": "addgene-full", "addgene_id": "81635", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -61963,7 +78128,10 @@ "plasmid_name": "pEBTetDBl-CLIP-FOP", "sequence-type": "addgene-full", "addgene_id": "136846", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136846.addgene-full.gb" }, @@ -61972,7 +78140,10 @@ "plasmid_name": "pACT4-DM", "sequence-type": "addgene-full", "addgene_id": "111233", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-61779-455-1_4", + "https://www.ncbi.nlm.nih.gov/pubmed/22218854" + ], "kit": null, "file": "data/addgene_plasmids/111233.addgene-full.gb" }, @@ -61981,7 +78152,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.F777S", "sequence-type": "addgene-full", "addgene_id": "82828", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82828.addgene-full.gb" }, @@ -61990,7 +78164,10 @@ "plasmid_name": "pHAGE-ERBB3-G40S", "sequence-type": "addgene-full", "addgene_id": "116361", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116361.addgene-full.gb" }, @@ -61999,7 +78176,10 @@ "plasmid_name": "pDONR221_SLC37A4", "sequence-type": "addgene-full", "addgene_id": "131914", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131914.addgene-full.gb" }, @@ -62008,7 +78188,10 @@ "plasmid_name": "pDONR223_IKZF5_WT", "sequence-type": "addgene-full", "addgene_id": "81855", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -62020,7 +78203,10 @@ "plasmid_name": "pDONR221-ZNF665", "sequence-type": "depositor-full", "addgene_id": "101448", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101448.depositor-full.gb" }, @@ -62029,7 +78215,6 @@ "plasmid_name": "pCLXEBR-pTF-Epo", "sequence-type": "addgene-full", "addgene_id": "114285", - "references": [], "kit": null, "file": "data/addgene_plasmids/114285.addgene-full.gb" }, @@ -62038,7 +78223,10 @@ "plasmid_name": "pCFJ1000", "sequence-type": "depositor-full", "addgene_id": "44475", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44475.depositor-full.gb" }, @@ -62047,7 +78235,10 @@ "plasmid_name": "pDONR221-kcnk3b", "sequence-type": "addgene-full", "addgene_id": "208986", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208986.addgene-full.gb" }, @@ -62056,7 +78247,10 @@ "plasmid_name": "pSRK2721", "sequence-type": "depositor-full", "addgene_id": "78572", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ab.2016.04.006", + "https://www.ncbi.nlm.nih.gov/pubmed/27105777" + ], "kit": null, "file": "data/addgene_plasmids/78572.depositor-full.gb" }, @@ -62065,7 +78259,10 @@ "plasmid_name": "p5E-6xgata2aECE", "sequence-type": "addgene-full", "addgene_id": "132969", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132969.addgene-full.gb" }, @@ -62074,7 +78271,6 @@ "plasmid_name": "Hs.NRAS Q61L", "sequence-type": "depositor-full", "addgene_id": "83178", - "references": [], "kit": null, "file": "data/addgene_plasmids/83178.depositor-full.gb" }, @@ -62083,7 +78279,6 @@ "plasmid_name": "pAM-PAT-35S-GW-Luc", "sequence-type": "addgene-full", "addgene_id": "80678", - "references": [], "kit": null, "file": "data/addgene_plasmids/80678.addgene-full.gb" }, @@ -62092,7 +78287,10 @@ "plasmid_name": "pAG424GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14151", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -62104,7 +78302,10 @@ "plasmid_name": "TFORF3505", "sequence-type": "addgene-full", "addgene_id": "144981", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144981.addgene-full.gb" }, @@ -62113,7 +78314,9 @@ "plasmid_name": "pDONR221-G6PD(1of2)", "sequence-type": "addgene-full", "addgene_id": "166176", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166176.addgene-full.gb" }, @@ -62122,7 +78325,10 @@ "plasmid_name": "p3E-rab42b", "sequence-type": "addgene-full", "addgene_id": "109711", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109711.addgene-full.gb" }, @@ -62131,7 +78337,10 @@ "plasmid_name": "TFORF3159", "sequence-type": "addgene-full", "addgene_id": "144635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144635.addgene-full.gb" }, @@ -62140,7 +78349,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp9", "sequence-type": "depositor-full", "addgene_id": "168958", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168958.depositor-full.gb" }, @@ -62149,7 +78361,10 @@ "plasmid_name": "pDEST 527-PHL2", "sequence-type": "addgene-full", "addgene_id": "118670", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118670.addgene-full.gb" }, @@ -62158,7 +78373,10 @@ "plasmid_name": "pDONR223_STK11_p.D194Y", "sequence-type": "addgene-full", "addgene_id": "81401", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -62170,7 +78388,10 @@ "plasmid_name": "pEPYCdKN0012", "sequence-type": "addgene-full", "addgene_id": "196153", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196153.addgene-full.gb" }, @@ -62179,7 +78400,10 @@ "plasmid_name": "KL202: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS-LSD1", "sequence-type": "addgene-full", "addgene_id": "121838", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121838.addgene-full.gb" }, @@ -62188,7 +78412,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS", "sequence-type": "depositor-full", "addgene_id": "59388", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.045005.114", + "https://www.ncbi.nlm.nih.gov/pubmed/24860013" + ], "kit": null, "file": "data/addgene_plasmids/59388.depositor-full.gb" }, @@ -62197,7 +78424,10 @@ "plasmid_name": "KP001: pMVP (L5-L4) Neo-P2A", "sequence-type": "addgene-full", "addgene_id": "121717", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121717.addgene-full.gb" }, @@ -62206,7 +78436,10 @@ "plasmid_name": "pDONR223_TSTA3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82967", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82967.addgene-full.gb" }, @@ -62215,7 +78448,10 @@ "plasmid_name": "pMuLE ENTR CMV mCherry L1-R5", "sequence-type": "depositor-full", "addgene_id": "62148", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62148.depositor-full.gb" }, @@ -62224,7 +78460,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP13_nostop", "sequence-type": "addgene-full", "addgene_id": "168528", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168528.addgene-full.gb" }, @@ -62233,7 +78472,9 @@ "plasmid_name": "pDRFLIP37", "sequence-type": "depositor-full", "addgene_id": "65515", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65515.depositor-full.gb" }, @@ -62242,7 +78483,10 @@ "plasmid_name": "pSGE_892_Nhe2_EcR-to-HLH4C_RB", "sequence-type": "depositor-full", "addgene_id": "71187", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71187.depositor-full.gb" }, @@ -62251,7 +78495,10 @@ "plasmid_name": "AAEL005894 DH44 R", "sequence-type": "addgene-full", "addgene_id": "115387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115387.addgene-full.gb" }, @@ -62260,7 +78507,6 @@ "plasmid_name": "pDEST51-LRRK2-G2019S", "sequence-type": "addgene-full", "addgene_id": "29401", - "references": [], "kit": null, "file": "data/addgene_plasmids/29401.addgene-full.gb" }, @@ -62269,7 +78515,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway mmu SE-Irf2bpl E", "sequence-type": "addgene-full", "addgene_id": "89374", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89374.addgene-full.gb" }, @@ -62278,7 +78527,6 @@ "plasmid_name": "R777-E101 Hs.HRAS", "sequence-type": "depositor-full", "addgene_id": "70385", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -62290,7 +78538,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CAMK1D_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158167", - "references": [], "kit": null, "file": "data/addgene_plasmids/158167.addgene-full.gb" }, @@ -62299,7 +78546,10 @@ "plasmid_name": "pLX304_zeo_mmFbxw7a", "sequence-type": "addgene-full", "addgene_id": "160102", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160102.addgene-full.gb" }, @@ -62308,7 +78558,10 @@ "plasmid_name": "HJ601: pMVP (R4-R3) mCherry open", "sequence-type": "addgene-full", "addgene_id": "121733", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121733.addgene-full.gb" }, @@ -62317,7 +78570,10 @@ "plasmid_name": "pDONR223_GFP", "sequence-type": "addgene-full", "addgene_id": "221469", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221469.addgene-full.gb" }, @@ -62326,7 +78582,10 @@ "plasmid_name": "pDONR223_PIH1D1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82943", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82943.addgene-full.gb" }, @@ -62335,7 +78594,10 @@ "plasmid_name": "pFRT_TO_FLAGHA_PRKRA_sgRNA_PAM_mutant", "sequence-type": "addgene-full", "addgene_id": "106112", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106112.addgene-full.gb" }, @@ -62344,7 +78606,10 @@ "plasmid_name": "p3E-EGFP-NS-MCS", "sequence-type": "depositor-full", "addgene_id": "75180", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -62356,7 +78621,10 @@ "plasmid_name": "pLEX307-SARS-CoV-2-3CL-C145A", "sequence-type": "addgene-full", "addgene_id": "160279", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160279.addgene-full.gb" }, @@ -62365,7 +78633,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP12_stop", "sequence-type": "addgene-full", "addgene_id": "168677", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168677.addgene-full.gb" }, @@ -62374,7 +78645,10 @@ "plasmid_name": "pENTR D-TOPO-C3_36", "sequence-type": "depositor-full", "addgene_id": "60277", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60277.depositor-full.gb" }, @@ -62383,7 +78657,10 @@ "plasmid_name": "pHAGE-BRAF-K601T", "sequence-type": "addgene-full", "addgene_id": "116171", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116171.addgene-full.gb" }, @@ -62392,7 +78669,10 @@ "plasmid_name": "p7052 pHAGE-P-CMVt-N-HA-GAW-AURKB", "sequence-type": "addgene-full", "addgene_id": "100142", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100142.addgene-full.gb" }, @@ -62401,7 +78681,10 @@ "plasmid_name": "p{ie1-eGFP::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182174", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182174.addgene-full.gb" }, @@ -62410,7 +78693,10 @@ "plasmid_name": "pDONR223_PRR23B_WT", "sequence-type": "addgene-full", "addgene_id": "81871", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -62422,7 +78708,6 @@ "plasmid_name": "p667-UBC-TAOK1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189887", - "references": [], "kit": null, "file": "data/addgene_plasmids/189887.addgene-full.gb" }, @@ -62431,7 +78716,10 @@ "plasmid_name": "pYPQ289-RVR", "sequence-type": "addgene-full", "addgene_id": "138127", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138127.addgene-full.gb" }, @@ -62440,7 +78728,10 @@ "plasmid_name": "pLenti CMV/TO Hygro DEST (693-2)", "sequence-type": "depositor-full", "addgene_id": "17291", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17291.depositor-full.gb" }, @@ -62449,7 +78740,10 @@ "plasmid_name": "pDONR223_ADORA2A_p.R220W", "sequence-type": "addgene-full", "addgene_id": "81425", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -62461,7 +78755,10 @@ "plasmid_name": "pcDNA3.2 TDP-43 NLS1, 5F-L YFP", "sequence-type": "addgene-full", "addgene_id": "84913", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09320", + "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + ], "kit": null, "file": "data/addgene_plasmids/84913.addgene-full.gb" }, @@ -62470,7 +78767,9 @@ "plasmid_name": "pDEST17-His10-DDX5(kf)-SNAP", "sequence-type": "addgene-full", "addgene_id": "166152", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166152.addgene-full.gb" }, @@ -62479,7 +78778,10 @@ "plasmid_name": "pSRK51", "sequence-type": "addgene-full", "addgene_id": "223722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crstbi.2023.100106", + "https://www.ncbi.nlm.nih.gov/pubmed/37822550" + ], "kit": null, "file": "data/addgene_plasmids/223722.addgene-full.gb" }, @@ -62488,7 +78790,10 @@ "plasmid_name": "pDONR221-SLC4A8_STOP", "sequence-type": "depositor-full", "addgene_id": "161466", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161466.depositor-full.gb" }, @@ -62497,7 +78802,10 @@ "plasmid_name": "pHAGE-EGFR-R108G", "sequence-type": "addgene-full", "addgene_id": "116291", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116291.addgene-full.gb" }, @@ -62506,7 +78814,10 @@ "plasmid_name": "pAC1820_pCR8-DR-RG6-SA-DR", "sequence-type": "addgene-full", "addgene_id": "118654", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118654.addgene-full.gb" }, @@ -62515,7 +78826,10 @@ "plasmid_name": "TFORF3135", "sequence-type": "addgene-full", "addgene_id": "144611", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144611.addgene-full.gb" }, @@ -62524,7 +78838,10 @@ "plasmid_name": "p3E-rab4a-DN", "sequence-type": "addgene-full", "addgene_id": "109735", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109735.addgene-full.gb" }, @@ -62533,7 +78850,10 @@ "plasmid_name": "pCS2-LRP6-3XFlag", "sequence-type": "addgene-full", "addgene_id": "180144", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-78019-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33299006" + ], "kit": null, "file": "data/addgene_plasmids/180144.addgene-full.gb" }, @@ -62542,7 +78862,10 @@ "plasmid_name": "pBKWH-p53", "sequence-type": "addgene-full", "addgene_id": "133900", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/133900.addgene-full.gb" }, @@ -62551,7 +78874,10 @@ "plasmid_name": "pDONR221-SLC28A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161234", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161234.addgene-full.gb" }, @@ -62560,7 +78886,10 @@ "plasmid_name": "pDONR223_GATA3_p.S140F", "sequence-type": "addgene-full", "addgene_id": "81611", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -62572,7 +78901,10 @@ "plasmid_name": "dg263_pENTR_ChrimsonCel", "sequence-type": "depositor-full", "addgene_id": "66101", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.177956", + "https://www.ncbi.nlm.nih.gov/pubmed/26022242" + ], "kit": null, "file": "data/addgene_plasmids/66101.depositor-full.gb" }, @@ -62581,7 +78913,10 @@ "plasmid_name": "TFORF2949", "sequence-type": "addgene-full", "addgene_id": "144425", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144425.addgene-full.gb" }, @@ -62590,7 +78925,10 @@ "plasmid_name": "pME nls-eos", "sequence-type": "depositor-full", "addgene_id": "73791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2010.04.023", + "https://www.ncbi.nlm.nih.gov/pubmed/20460180" + ], "kit": null, "file": "data/addgene_plasmids/73791.depositor-full.gb" }, @@ -62599,7 +78937,10 @@ "plasmid_name": "actc1b-BTK-mKate2", "sequence-type": "addgene-full", "addgene_id": "109501", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109501.addgene-full.gb" }, @@ -62608,7 +78949,10 @@ "plasmid_name": "NcCas9", "sequence-type": "addgene-full", "addgene_id": "194093", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-022-04258-z", + "https://www.ncbi.nlm.nih.gov/pubmed/36435853" + ], "kit": null, "file": "data/addgene_plasmids/194093.addgene-full.gb" }, @@ -62617,7 +78961,10 @@ "plasmid_name": "pMartini Gate A R1-R2", "sequence-type": "depositor-full", "addgene_id": "36425", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "file": "data/addgene_plasmids/36425.depositor-full.gb" }, @@ -62626,7 +78973,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-1", "sequence-type": "depositor-full", "addgene_id": "46704", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46704.depositor-full.gb" }, @@ -62635,7 +78985,10 @@ "plasmid_name": "TFORF3395", "sequence-type": "addgene-full", "addgene_id": "144871", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144871.addgene-full.gb" }, @@ -62644,7 +78997,10 @@ "plasmid_name": "RBM8A", "sequence-type": "addgene-full", "addgene_id": "155910", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155910.addgene-full.gb" }, @@ -62653,7 +79009,6 @@ "plasmid_name": "pGWG_RUBYseed", "sequence-type": "addgene-full", "addgene_id": "225989", - "references": [], "kit": null, "file": "data/addgene_plasmids/225989.addgene-full.gb" }, @@ -62662,7 +79017,10 @@ "plasmid_name": "pcDNA3_SP-AVPR2-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194373", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194373.addgene-full.gb" }, @@ -62671,7 +79029,10 @@ "plasmid_name": "pHAGE-ERBB2-P885S", "sequence-type": "addgene-full", "addgene_id": "116345", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116345.addgene-full.gb" }, @@ -62680,7 +79041,10 @@ "plasmid_name": "pDONR221_MPC2", "sequence-type": "addgene-full", "addgene_id": "131930", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131930.addgene-full.gb" }, @@ -62689,7 +79053,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep76", "sequence-type": "addgene-full", "addgene_id": "136862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136862.addgene-full.gb" }, @@ -62698,7 +79065,6 @@ "plasmid_name": "PSMD3_BirA_Nterm", "sequence-type": "addgene-full", "addgene_id": "221526", - "references": [], "kit": null, "file": "data/addgene_plasmids/221526.addgene-full.gb" }, @@ -62707,7 +79073,10 @@ "plasmid_name": "pHWBF07exp", "sequence-type": "addgene-full", "addgene_id": "130832", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130832.addgene-full.gb" }, @@ -62716,7 +79085,10 @@ "plasmid_name": "pDONR223_MDM2_WT", "sequence-type": "addgene-full", "addgene_id": "82897", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82897.addgene-full.gb" }, @@ -62725,7 +79097,10 @@ "plasmid_name": "pSLIK 3xFLAG-MTUS1 zeo", "sequence-type": "addgene-full", "addgene_id": "192323", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192323.addgene-full.gb" }, @@ -62734,7 +79109,10 @@ "plasmid_name": "pDONR223 HCoV-229E NSP12_nostop", "sequence-type": "addgene-full", "addgene_id": "168738", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168738.addgene-full.gb" }, @@ -62743,7 +79121,10 @@ "plasmid_name": "pAG303GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14254", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -62755,7 +79136,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP2", "sequence-type": "addgene-full", "addgene_id": "158353", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158353.addgene-full.gb" }, @@ -62764,7 +79148,10 @@ "plasmid_name": "mKate2-P2A-APEX2-OSBP", "sequence-type": "depositor-full", "addgene_id": "67664", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67664.depositor-full.gb" }, @@ -62773,7 +79160,10 @@ "plasmid_name": "pDONR221-TMEM104_STOP", "sequence-type": "depositor-full", "addgene_id": "161428", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161428.depositor-full.gb" }, @@ -62782,7 +79172,10 @@ "plasmid_name": "RCASBP-Y CHA", "sequence-type": "depositor-full", "addgene_id": "11480", - "references": [], + "references": [ + "https://doi.org/10.1093/dnares/8.5.221", + "https://www.ncbi.nlm.nih.gov/pubmed/11759842" + ], "kit": null, "file": "data/addgene_plasmids/11480.depositor-full.gb" }, @@ -62791,7 +79184,10 @@ "plasmid_name": "pENTR-R4r-ECFP-R3r", "sequence-type": "depositor-full", "addgene_id": "32594", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32594.depositor-full.gb" }, @@ -62800,7 +79196,10 @@ "plasmid_name": "TFORF3427", "sequence-type": "addgene-full", "addgene_id": "144903", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144903.addgene-full.gb" }, @@ -62809,7 +79208,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 14-22 KR", "sequence-type": "addgene-full", "addgene_id": "129300", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129300.addgene-full.gb" }, @@ -62818,7 +79220,10 @@ "plasmid_name": "pDONR223_TBL1XR1_p.R166Q", "sequence-type": "addgene-full", "addgene_id": "81483", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -62830,7 +79235,10 @@ "plasmid_name": "pXN21-Dest", "sequence-type": "addgene-full", "addgene_id": "105086", - "references": [], + "references": [ + "https://doi.org/10.1002/0471142301.ns0527s41", + "https://www.ncbi.nlm.nih.gov/pubmed/18428659" + ], "kit": null, "file": "data/addgene_plasmids/105086.addgene-full.gb" }, @@ -62839,7 +79247,6 @@ "plasmid_name": "pDONR221-deltaUBA-short-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "195398", - "references": [], "kit": null, "file": "data/addgene_plasmids/195398.addgene-full.gb" }, @@ -62860,7 +79267,10 @@ "plasmid_name": "pDONR223_KRT26_WT", "sequence-type": "addgene-full", "addgene_id": "81763", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -62872,7 +79282,10 @@ "plasmid_name": "pDONR221-SLC4A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161346", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161346.addgene-full.gb" }, @@ -62881,7 +79294,9 @@ "plasmid_name": "p3E-IRES-3xNLS-mScarlet-I3-pA (JDW 1360)", "sequence-type": "addgene-full", "addgene_id": "224536", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224536.addgene-full.gb" }, @@ -62890,7 +79305,9 @@ "plasmid_name": "pMpGWB110", "sequence-type": "depositor-full", "addgene_id": "68564", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68564.depositor-full.gb" }, @@ -62899,7 +79316,9 @@ "plasmid_name": "pDONR221-SOD2(v1)", "sequence-type": "addgene-full", "addgene_id": "166214", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166214.addgene-full.gb" }, @@ -62908,7 +79327,10 @@ "plasmid_name": "pMH-SFB-BRCA2", "sequence-type": "addgene-full", "addgene_id": "99395", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0811159106", + "https://www.ncbi.nlm.nih.gov/pubmed/19369211" + ], "kit": null, "file": "data/addgene_plasmids/99395.addgene-full.gb" }, @@ -62917,7 +79339,10 @@ "plasmid_name": "TFORF3081", "sequence-type": "addgene-full", "addgene_id": "144557", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144557.addgene-full.gb" }, @@ -62926,7 +79351,10 @@ "plasmid_name": "pLenti-PalmGRET", "sequence-type": "addgene-full", "addgene_id": "158221", - "references": [], + "references": [ + "https://doi.org/10.1002/advs.202001467", + "https://www.ncbi.nlm.nih.gov/pubmed/33042758" + ], "kit": null, "file": "data/addgene_plasmids/158221.addgene-full.gb" }, @@ -62935,7 +79363,10 @@ "plasmid_name": "pLIX402 PHF2", "sequence-type": "addgene-full", "addgene_id": "91700", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aad3680", + "https://www.ncbi.nlm.nih.gov/pubmed/26941323" + ], "kit": null, "file": "data/addgene_plasmids/91700.addgene-full.gb" }, @@ -62944,7 +79375,10 @@ "plasmid_name": "pCMU-ACTFr", "sequence-type": "depositor-full", "addgene_id": "61191", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61191.depositor-full.gb" }, @@ -62953,7 +79387,9 @@ "plasmid_name": "pPB-cT3G-cERP2-HDAC6", "sequence-type": "addgene-full", "addgene_id": "222566", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222566.addgene-full.gb" }, @@ -62962,7 +79398,10 @@ "plasmid_name": "IA201: pMAGIC (R4-R3) NLS-Sa dCas9-NLS", "sequence-type": "addgene-full", "addgene_id": "121821", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121821.addgene-full.gb" }, @@ -62971,7 +79410,10 @@ "plasmid_name": "IY001: pMVP (L3-L2) BioID2 + polyA", "sequence-type": "addgene-full", "addgene_id": "121795", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121795.addgene-full.gb" }, @@ -62980,7 +79422,10 @@ "plasmid_name": "pDONR223_CNBD1_p.L396P", "sequence-type": "addgene-full", "addgene_id": "81418", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -62992,7 +79437,10 @@ "plasmid_name": "pBA cMYC-PHL2", "sequence-type": "addgene-full", "addgene_id": "118669", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118669.addgene-full.gb" }, @@ -63001,7 +79449,10 @@ "plasmid_name": "p3E-rab40b", "sequence-type": "addgene-full", "addgene_id": "109708", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109708.addgene-full.gb" }, @@ -63010,7 +79461,10 @@ "plasmid_name": "HSPA8_pLX307", "sequence-type": "addgene-full", "addgene_id": "98343", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98343.addgene-full.gb" }, @@ -63019,7 +79473,10 @@ "plasmid_name": "pEntry_HCoV-OC43-NS12.9", "sequence-type": "depositor-full", "addgene_id": "168944", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168944.depositor-full.gb" }, @@ -63028,7 +79485,9 @@ "plasmid_name": "p5E-hs_ICAM_full (JDW 1047)", "sequence-type": "addgene-full", "addgene_id": "224479", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224479.addgene-full.gb" }, @@ -63037,7 +79496,10 @@ "plasmid_name": "pDONR223_SPANXN4_WT", "sequence-type": "addgene-full", "addgene_id": "81998", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -63049,7 +79511,10 @@ "plasmid_name": "pBullet-cg-c", "sequence-type": "depositor-full", "addgene_id": "53070", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53070.depositor-full.gb" }, @@ -63058,7 +79523,6 @@ "plasmid_name": "pDEST-Spe4-RfA-emiRFP703-stop", "sequence-type": "addgene-full", "addgene_id": "186386", - "references": [], "kit": null, "file": "data/addgene_plasmids/186386.addgene-full.gb" }, @@ -63067,7 +79531,10 @@ "plasmid_name": "pCM5.40", "sequence-type": "depositor-full", "addgene_id": "19393", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19393.depositor-full.gb" }, @@ -63076,7 +79543,10 @@ "plasmid_name": "TFORF2942", "sequence-type": "addgene-full", "addgene_id": "144418", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144418.addgene-full.gb" }, @@ -63085,7 +79555,10 @@ "plasmid_name": "Wnt10B Non-STOP", "sequence-type": "depositor-full", "addgene_id": "34748", - "references": [], + "references": [ + "https://doi.org/10.1016/j.diff.2012.06.004", + "https://www.ncbi.nlm.nih.gov/pubmed/22784633" + ], "kit": null, "file": "data/addgene_plasmids/34748.depositor-full.gb" }, @@ -63094,7 +79567,10 @@ "plasmid_name": "pDONR221-ZNF347", "sequence-type": "depositor-full", "addgene_id": "101454", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101454.depositor-full.gb" }, @@ -63103,7 +79579,10 @@ "plasmid_name": "pDONR223_KEAP1_p.L268P", "sequence-type": "addgene-full", "addgene_id": "82831", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82831.addgene-full.gb" }, @@ -63112,7 +79591,6 @@ "plasmid_name": "Hs.KRAS4b Q61K", "sequence-type": "depositor-full", "addgene_id": "83164", - "references": [], "kit": null, "file": "data/addgene_plasmids/83164.depositor-full.gb" }, @@ -63121,7 +79599,10 @@ "plasmid_name": "p35S_GFP-GUS", "sequence-type": "addgene-full", "addgene_id": "167122", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.220723.117", + "https://www.ncbi.nlm.nih.gov/pubmed/28784835" + ], "kit": null, "file": "data/addgene_plasmids/167122.addgene-full.gb" }, @@ -63130,7 +79611,10 @@ "plasmid_name": "pDONR223_SMAD4_p.V492F", "sequence-type": "addgene-full", "addgene_id": "82785", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82785.addgene-full.gb" }, @@ -63139,7 +79623,10 @@ "plasmid_name": "369 pTol-lmo2:egfpDest", "sequence-type": "depositor-full", "addgene_id": "73488", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/73488.depositor-full.gb" }, @@ -63148,7 +79635,9 @@ "plasmid_name": "p3E-FRT-KanR-FRT pA", "sequence-type": "depositor-full", "addgene_id": "82601", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82601.depositor-full.gb" }, @@ -63157,7 +79646,10 @@ "plasmid_name": "pDONR223_EYS_p.N269H", "sequence-type": "addgene-full", "addgene_id": "81557", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -63169,7 +79661,10 @@ "plasmid_name": "pDONR221-SLC2A5_STOP", "sequence-type": "depositor-full", "addgene_id": "161256", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161256.depositor-full.gb" }, @@ -63178,7 +79673,10 @@ "plasmid_name": "actc1b-mKate2-rab4b", "sequence-type": "addgene-full", "addgene_id": "109647", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109647.addgene-full.gb" }, @@ -63187,7 +79685,10 @@ "plasmid_name": "pENTR-ZmIAA21", "sequence-type": "addgene-full", "addgene_id": "188438", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188438.addgene-full.gb" }, @@ -63196,7 +79697,10 @@ "plasmid_name": "TFORF3287", "sequence-type": "addgene-full", "addgene_id": "144763", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144763.addgene-full.gb" }, @@ -63205,7 +79709,6 @@ "plasmid_name": "R777-E115 Hs.KRAS", "sequence-type": "depositor-full", "addgene_id": "70399", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -63217,7 +79720,10 @@ "plasmid_name": "pENTR-BS-AtMIR390a-B/c", "sequence-type": "addgene-full", "addgene_id": "199559", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkad747", + "https://www.ncbi.nlm.nih.gov/pubmed/37713607" + ], "kit": null, "file": "data/addgene_plasmids/199559.addgene-full.gb" }, @@ -63226,7 +79732,10 @@ "plasmid_name": "pDONR221_SLC26A11", "sequence-type": "addgene-full", "addgene_id": "131996", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131996.addgene-full.gb" }, @@ -63235,7 +79744,10 @@ "plasmid_name": "R619-M96-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(318-529)-3C-His8-SBP", "sequence-type": "addgene-full", "addgene_id": "166020", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/166020.addgene-full.gb" }, @@ -63244,7 +79756,10 @@ "plasmid_name": "TFORF3007", "sequence-type": "addgene-full", "addgene_id": "144483", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144483.addgene-full.gb" }, @@ -63253,7 +79768,6 @@ "plasmid_name": "R777-E119 Hs.KSR2", "sequence-type": "depositor-full", "addgene_id": "70403", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -63265,7 +79779,10 @@ "plasmid_name": "pDONR223_PIK3R3_WT", "sequence-type": "addgene-full", "addgene_id": "81903", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -63277,7 +79794,10 @@ "plasmid_name": "pDONR221-SLC2A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161292", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161292.addgene-full.gb" }, @@ -63286,7 +79806,10 @@ "plasmid_name": "pMuLE ENTR SV40 tdTomato L5-L2", "sequence-type": "depositor-full", "addgene_id": "62154", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62154.depositor-full.gb" }, @@ -63295,7 +79818,10 @@ "plasmid_name": "pDEST47-MCU-GFP", "sequence-type": "depositor-full", "addgene_id": "31732", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "file": "data/addgene_plasmids/31732.depositor-full.gb" }, @@ -63304,7 +79830,10 @@ "plasmid_name": "pENTR223-BcRF1(vTBP)", "sequence-type": "addgene-full", "addgene_id": "195832", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195832.addgene-full.gb" }, @@ -63313,7 +79842,10 @@ "plasmid_name": "pENTR223-BDLF3", "sequence-type": "addgene-full", "addgene_id": "195786", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195786.addgene-full.gb" }, @@ -63322,7 +79854,10 @@ "plasmid_name": "C512-E23: attB5r-mRuby3-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162945", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -63334,7 +79869,10 @@ "plasmid_name": "pLentiCMVblast_SLC38A2_N82A", "sequence-type": "addgene-full", "addgene_id": "156181", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0959", + "https://www.ncbi.nlm.nih.gov/pubmed/32341021" + ], "kit": null, "file": "data/addgene_plasmids/156181.addgene-full.gb" }, @@ -63343,7 +79881,10 @@ "plasmid_name": "pAC8_PH-6His-Nter-GWs-Lox (VE5587)", "sequence-type": "addgene-full", "addgene_id": "163768", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-021-04715-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35132103" + ], "kit": null, "file": "data/addgene_plasmids/163768.addgene-full.gb" }, @@ -63352,7 +79893,6 @@ "plasmid_name": "DDX3X - I107V in pENTR", "sequence-type": "addgene-full", "addgene_id": "216573", - "references": [], "kit": null, "file": "data/addgene_plasmids/216573.addgene-full.gb" }, @@ -63361,7 +79901,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp7", "sequence-type": "depositor-full", "addgene_id": "168870", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168870.depositor-full.gb" }, @@ -63370,7 +79913,10 @@ "plasmid_name": "pDEST-GST-FBW7 alpha", "sequence-type": "addgene-full", "addgene_id": "197456", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "file": "data/addgene_plasmids/197456.addgene-full.gb" }, @@ -63379,7 +79925,10 @@ "plasmid_name": "pHAGE-PTEN-R130*", "sequence-type": "addgene-full", "addgene_id": "116629", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116629.addgene-full.gb" }, @@ -63388,7 +79937,10 @@ "plasmid_name": "pDONR221_SLC5A2", "sequence-type": "addgene-full", "addgene_id": "132241", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132241.addgene-full.gb" }, @@ -63397,7 +79949,10 @@ "plasmid_name": "pVenusCfC", "sequence-type": "addgene-full", "addgene_id": "128567", - "references": [], + "references": [ + "https://doi.org/10.1177/1087057116659438", + "https://www.ncbi.nlm.nih.gov/pubmed/27455993" + ], "kit": null, "file": "data/addgene_plasmids/128567.addgene-full.gb" }, @@ -63406,7 +79961,10 @@ "plasmid_name": "pJRA104", "sequence-type": "addgene-full", "addgene_id": "209337", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209337.addgene-full.gb" }, @@ -63415,7 +79973,10 @@ "plasmid_name": "pDONR221-ZNF681", "sequence-type": "depositor-full", "addgene_id": "101560", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101560.depositor-full.gb" }, @@ -63424,7 +79985,10 @@ "plasmid_name": "pME-fli1b", "sequence-type": "depositor-full", "addgene_id": "49019", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49019.depositor-full.gb" }, @@ -63433,7 +79997,10 @@ "plasmid_name": "MAC_N_SOX17", "sequence-type": "addgene-full", "addgene_id": "167793", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167793.addgene-full.gb" }, @@ -63442,7 +80009,10 @@ "plasmid_name": "pDONR223_IRGM_WT", "sequence-type": "addgene-full", "addgene_id": "82134", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82134.addgene-full.gb" }, @@ -63451,7 +80021,6 @@ "plasmid_name": "g5s pDONR", "sequence-type": "addgene-full", "addgene_id": "117450", - "references": [], "kit": null, "file": "data/addgene_plasmids/117450.addgene-full.gb" }, @@ -63460,7 +80029,10 @@ "plasmid_name": "pENTR-2B-Nkx2-5", "sequence-type": "addgene-full", "addgene_id": "98612", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98612.addgene-full.gb" }, @@ -63469,7 +80041,10 @@ "plasmid_name": "pSEM223 - [4-1] - Promoter - Pmlc-2(no_start)", "sequence-type": "addgene-full", "addgene_id": "159889", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000302", + "https://www.ncbi.nlm.nih.gov/pubmed/32908967" + ], "kit": null, "file": "data/addgene_plasmids/159889.addgene-full.gb" }, @@ -63478,7 +80053,10 @@ "plasmid_name": "NDUFV3_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176946", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176946.addgene-full.gb" }, @@ -63487,7 +80065,10 @@ "plasmid_name": "pLD-puro-Cc-PRDX5E80K-VA", "sequence-type": "addgene-full", "addgene_id": "98689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "file": "data/addgene_plasmids/98689.addgene-full.gb" }, @@ -63496,7 +80077,6 @@ "plasmid_name": "pDest-633", "sequence-type": "addgene-full", "addgene_id": "161877", - "references": [], "kit": null, "file": "data/addgene_plasmids/161877.addgene-full.gb" }, @@ -63505,7 +80085,10 @@ "plasmid_name": "BirA-Myc_N_HEN1", "sequence-type": "addgene-full", "addgene_id": "167708", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167708.addgene-full.gb" }, @@ -63514,7 +80097,6 @@ "plasmid_name": "pAG416GAL10-PV_3C", "sequence-type": "addgene-full", "addgene_id": "203472", - "references": [], "kit": null, "file": "data/addgene_plasmids/203472.addgene-full.gb" }, @@ -63523,7 +80105,6 @@ "plasmid_name": "BRAF - I208V in pENTR", "sequence-type": "addgene-full", "addgene_id": "216608", - "references": [], "kit": null, "file": "data/addgene_plasmids/216608.addgene-full.gb" }, @@ -63532,7 +80113,10 @@ "plasmid_name": "pMuLE_ENTR_PTCH1-mTurquoise2_R4-R3", "sequence-type": "addgene-full", "addgene_id": "113864", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "file": "data/addgene_plasmids/113864.addgene-full.gb" }, @@ -63541,7 +80125,10 @@ "plasmid_name": "pDONR/zeo-MACROD1", "sequence-type": "addgene-full", "addgene_id": "172572", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172572.addgene-full.gb" }, @@ -63550,7 +80137,10 @@ "plasmid_name": "Tol2-LyzC-Utrophin-GFP-U6ac-Rac2 guides", "sequence-type": "addgene-full", "addgene_id": "168254", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "file": "data/addgene_plasmids/168254.addgene-full.gb" }, @@ -63559,7 +80149,6 @@ "plasmid_name": "R777-E253 Hs.RASSF10", "sequence-type": "depositor-full", "addgene_id": "70537", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -63571,7 +80160,10 @@ "plasmid_name": "pJW4.15", "sequence-type": "addgene-full", "addgene_id": "131373", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/131373.addgene-full.gb" }, @@ -63580,7 +80172,10 @@ "plasmid_name": "pLX307-VHL(Y98H)-3F-BirA", "sequence-type": "addgene-full", "addgene_id": "220148", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-024-01590-9", + "https://www.ncbi.nlm.nih.gov/pubmed/38514884" + ], "kit": null, "file": "data/addgene_plasmids/220148.addgene-full.gb" }, @@ -63589,7 +80184,10 @@ "plasmid_name": "pAG306GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14284", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -63601,7 +80199,10 @@ "plasmid_name": "pDest17_hnRNPA1_YtoW", "sequence-type": "addgene-full", "addgene_id": "224253", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.04.06.535902", + "https://www.ncbi.nlm.nih.gov/pubmed/37066350" + ], "kit": null, "file": "data/addgene_plasmids/224253.addgene-full.gb" }, @@ -63610,7 +80211,10 @@ "plasmid_name": "pDONR221-SV2A_STOP", "sequence-type": "addgene-full", "addgene_id": "161423", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161423.addgene-full.gb" }, @@ -63619,7 +80223,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0487-luc2", "sequence-type": "addgene-full", "addgene_id": "214638", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214638.addgene-full.gb" }, @@ -63640,7 +80247,10 @@ "plasmid_name": "pT2-cryR;tmem88aP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90167", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90167.addgene-full.gb" }, @@ -63649,7 +80259,10 @@ "plasmid_name": "pDONR223-FLT4", "sequence-type": "addgene-full", "addgene_id": "23923", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -63661,7 +80274,10 @@ "plasmid_name": "pHAGE-PIK3CA-E545Q", "sequence-type": "addgene-full", "addgene_id": "116486", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116486.addgene-full.gb" }, @@ -63670,7 +80286,6 @@ "plasmid_name": "pENTR-Emerald", "sequence-type": "addgene-full", "addgene_id": "139549", - "references": [], "kit": null, "file": "data/addgene_plasmids/139549.addgene-full.gb" }, @@ -63679,7 +80294,10 @@ "plasmid_name": "PE_3: Plux_lac_bD", "sequence-type": "addgene-full", "addgene_id": "113604", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113604.addgene-full.gb" }, @@ -63688,7 +80306,10 @@ "plasmid_name": "GSK3A_pLX307", "sequence-type": "depositor-full", "addgene_id": "98341", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98341.depositor-full.gb" }, @@ -63697,7 +80318,9 @@ "plasmid_name": "p5E-Ui4-eSIBR", "sequence-type": "depositor-full", "addgene_id": "82586", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82586.depositor-full.gb" }, @@ -63706,7 +80329,10 @@ "plasmid_name": "pCW57.1 Ex8 mut WT1", "sequence-type": "addgene-full", "addgene_id": "217645", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "file": "data/addgene_plasmids/217645.addgene-full.gb" }, @@ -63715,7 +80341,6 @@ "plasmid_name": "IDG_GABRA5_OE_1", "sequence-type": "addgene-full", "addgene_id": "161617", - "references": [], "kit": null, "file": "data/addgene_plasmids/161617.addgene-full.gb" }, @@ -63724,7 +80349,10 @@ "plasmid_name": "pLenti_CMV_Puro_SFB_GNB1L_WD 6 deletion", "sequence-type": "addgene-full", "addgene_id": "224387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.07.004", + "https://www.ncbi.nlm.nih.gov/pubmed/37541219" + ], "kit": null, "file": "data/addgene_plasmids/224387.addgene-full.gb" }, @@ -63733,7 +80361,10 @@ "plasmid_name": "pDONR-IAA3_no stop", "sequence-type": "depositor-full", "addgene_id": "83863", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83863.depositor-full.gb" }, @@ -63742,7 +80373,10 @@ "plasmid_name": "pHAGE-NOTCH2NL", "sequence-type": "addgene-full", "addgene_id": "116766", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116766.addgene-full.gb" }, @@ -63751,7 +80385,10 @@ "plasmid_name": "pDEST-CMV GFP-LC3B WT", "sequence-type": "addgene-full", "addgene_id": "123114", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123114.addgene-full.gb" }, @@ -63760,7 +80397,10 @@ "plasmid_name": "pDONR221_SLC35B4", "sequence-type": "addgene-full", "addgene_id": "132075", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132075.addgene-full.gb" }, @@ -63769,7 +80409,10 @@ "plasmid_name": "pZA12", "sequence-type": "addgene-full", "addgene_id": "158490", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158490.addgene-full.gb" }, @@ -63778,7 +80421,10 @@ "plasmid_name": "PTPRA-MAC", "sequence-type": "addgene-full", "addgene_id": "139632", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139632.addgene-full.gb" }, @@ -63787,7 +80433,10 @@ "plasmid_name": "C121-E12: NanoLuc", "sequence-type": "addgene-full", "addgene_id": "162891", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -63799,7 +80448,10 @@ "plasmid_name": "pDONR223_ERBB2_WT", "sequence-type": "addgene-full", "addgene_id": "82300", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82300.addgene-full.gb" }, @@ -63808,7 +80460,6 @@ "plasmid_name": "R777-E295 Hs.RPS6KA6", "sequence-type": "depositor-full", "addgene_id": "70579", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -63820,7 +80471,6 @@ "plasmid_name": "p5'Entry-lck-7.4kb", "sequence-type": "depositor-full", "addgene_id": "58891", - "references": [], "kit": null, "file": "data/addgene_plasmids/58891.depositor-full.gb" }, @@ -63829,7 +80479,10 @@ "plasmid_name": "mTALEAD 16S rRNA-1139T10C", "sequence-type": "addgene-full", "addgene_id": "210838", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "file": "data/addgene_plasmids/210838.addgene-full.gb" }, @@ -63838,7 +80491,10 @@ "plasmid_name": "PE_20: Pxyl_lac_eG::sfYFP", "sequence-type": "addgene-full", "addgene_id": "104881", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104881.addgene-full.gb" }, @@ -63847,7 +80503,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1", "sequence-type": "addgene-full", "addgene_id": "175766", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175766.addgene-full.gb" }, @@ -63856,7 +80515,10 @@ "plasmid_name": "C453-E21: attB4-FerHp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162978", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -63868,7 +80530,10 @@ "plasmid_name": "LIIc R 1-2", "sequence-type": "depositor-full", "addgene_id": "54367", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54367.depositor-full.gb" }, @@ -63877,7 +80542,10 @@ "plasmid_name": "pENTR2-L3-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141016", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141016.addgene-full.gb" }, @@ -63886,7 +80554,10 @@ "plasmid_name": "pHAGE-PTCH1-S1203Rfs*52", "sequence-type": "addgene-full", "addgene_id": "116614", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116614.addgene-full.gb" }, @@ -63895,7 +80566,6 @@ "plasmid_name": "pREP82xN_ccdB", "sequence-type": "depositor-full", "addgene_id": "79026", - "references": [], "kit": null, "file": "data/addgene_plasmids/79026.depositor-full.gb" }, @@ -63904,7 +80574,10 @@ "plasmid_name": "pINDUCER21-puro_TAOK2-D151A", "sequence-type": "addgene-full", "addgene_id": "172980", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172980.addgene-full.gb" }, @@ -63913,7 +80586,10 @@ "plasmid_name": "pcDNA5FRT/TO-Ataxin3-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113496", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113496.addgene-full.gb" }, @@ -63922,7 +80598,10 @@ "plasmid_name": "pENTR-OsMIR390-B/c", "sequence-type": "depositor-full", "addgene_id": "61468", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12835", + "https://www.ncbi.nlm.nih.gov/pubmed/25809382" + ], "kit": null, "file": "data/addgene_plasmids/61468.depositor-full.gb" }, @@ -63931,7 +80610,10 @@ "plasmid_name": "pDONR223-TBK1", "sequence-type": "addgene-full", "addgene_id": "23851", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -63943,7 +80625,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RNASEL_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170604", - "references": [], "kit": null, "file": "data/addgene_plasmids/170604.addgene-full.gb" }, @@ -63952,7 +80633,10 @@ "plasmid_name": "MAC_C_LMTK3", "sequence-type": "addgene-full", "addgene_id": "187773", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187773.addgene-full.gb" }, @@ -63961,7 +80645,10 @@ "plasmid_name": "pDONR223_DPY30_WT", "sequence-type": "addgene-full", "addgene_id": "82109", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82109.addgene-full.gb" }, @@ -63970,7 +80657,10 @@ "plasmid_name": "pDONR223_CPXCR1_p.S102P", "sequence-type": "addgene-full", "addgene_id": "81340", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -63982,7 +80672,10 @@ "plasmid_name": "R725-X20-566: His6-MBP-tev-Avi-Hs.LGALS3", "sequence-type": "addgene-full", "addgene_id": "159700", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.005669", + "https://www.ncbi.nlm.nih.gov/pubmed/30559287" + ], "kit": null, "file": "data/addgene_plasmids/159700.addgene-full.gb" }, @@ -63991,7 +80684,6 @@ "plasmid_name": "pAG426-GAL-Alpha-synuclein-E46K", "sequence-type": "addgene-full", "addgene_id": "181723", - "references": [], "kit": null, "file": "data/addgene_plasmids/181723.addgene-full.gb" }, @@ -64000,7 +80692,10 @@ "plasmid_name": "pAG414GPD-CaCYP722C(pYL803)", "sequence-type": "addgene-full", "addgene_id": "178291", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178291.addgene-full.gb" }, @@ -64009,7 +80704,10 @@ "plasmid_name": "pcDNA-DEST53 PINK1 N-GFP", "sequence-type": "addgene-full", "addgene_id": "13315", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0500617102", + "https://www.ncbi.nlm.nih.gov/pubmed/15824318" + ], "kit": null, "file": "data/addgene_plasmids/13315.addgene-full.gb" }, @@ -64018,7 +80716,6 @@ "plasmid_name": "R777-E065 Hs.ETS2", "sequence-type": "depositor-full", "addgene_id": "70349", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -64030,7 +80727,10 @@ "plasmid_name": "ICP8-P2A/Crimson (pSLIK4)", "sequence-type": "addgene-full", "addgene_id": "113859", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0200955", + "https://www.ncbi.nlm.nih.gov/pubmed/30110337" + ], "kit": null, "file": "data/addgene_plasmids/113859.addgene-full.gb" }, @@ -64039,7 +80739,10 @@ "plasmid_name": "pGGEV_5_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49300", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -64051,7 +80754,10 @@ "plasmid_name": "pDONR221_SLC37A3", "sequence-type": "addgene-full", "addgene_id": "132107", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132107.addgene-full.gb" }, @@ -64060,7 +80766,10 @@ "plasmid_name": "pENTR/pTER shEGFP #2 (728-2)", "sequence-type": "depositor-full", "addgene_id": "17471", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17471.depositor-full.gb" }, @@ -64069,7 +80778,10 @@ "plasmid_name": "pTripZ EV", "sequence-type": "addgene-full", "addgene_id": "209071", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-18-0389", + "https://www.ncbi.nlm.nih.gov/pubmed/30373918" + ], "kit": null, "file": "data/addgene_plasmids/209071.addgene-full.gb" }, @@ -64078,7 +80790,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST PUM2", "sequence-type": "depositor-full", "addgene_id": "40292", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2010.03.009", + "https://www.ncbi.nlm.nih.gov/pubmed/20371350" + ], "kit": null, "file": "data/addgene_plasmids/40292.depositor-full.gb" }, @@ -64087,7 +80802,10 @@ "plasmid_name": "pDONR223_SMAD3_WT", "sequence-type": "addgene-full", "addgene_id": "82272", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82272.addgene-full.gb" }, @@ -64096,7 +80814,10 @@ "plasmid_name": "pMuLE ENTR mCherry L5-L2", "sequence-type": "depositor-full", "addgene_id": "62184", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62184.depositor-full.gb" }, @@ -64105,7 +80826,10 @@ "plasmid_name": "pQHD", "sequence-type": "depositor-full", "addgene_id": "48102", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.02296-13", + "https://www.ncbi.nlm.nih.gov/pubmed/23995928" + ], "kit": null, "file": "data/addgene_plasmids/48102.depositor-full.gb" }, @@ -64114,7 +80838,10 @@ "plasmid_name": "pAG414GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14360", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -64126,7 +80853,10 @@ "plasmid_name": "pGWB544", "sequence-type": "depositor-full", "addgene_id": "74878", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74878.depositor-full.gb" }, @@ -64135,7 +80865,10 @@ "plasmid_name": "pTW103", "sequence-type": "addgene-full", "addgene_id": "115946", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115946.addgene-full.gb" }, @@ -64144,7 +80877,10 @@ "plasmid_name": "pBP-split-intein-Gal4[1-20]-N-int", "sequence-type": "addgene-full", "addgene_id": "199201", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2304730120", + "https://www.ncbi.nlm.nih.gov/pubmed/37276389" + ], "kit": null, "file": "data/addgene_plasmids/199201.addgene-full.gb" }, @@ -64153,7 +80889,10 @@ "plasmid_name": "pCAG/ATP9B(E272Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209245", - "references": [], + "references": [ + "https://doi.org/10.1002/1873-3468.13629", + "https://www.ncbi.nlm.nih.gov/pubmed/31571211" + ], "kit": null, "file": "data/addgene_plasmids/209245.addgene-full.gb" }, @@ -64162,7 +80901,10 @@ "plasmid_name": "pSC19", "sequence-type": "addgene-full", "addgene_id": "104793", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104793.addgene-full.gb" }, @@ -64171,7 +80913,10 @@ "plasmid_name": "pDONR221-MFSD14A_STOP", "sequence-type": "depositor-full", "addgene_id": "161035", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161035.depositor-full.gb" }, @@ -64180,7 +80925,6 @@ "plasmid_name": "p663-UBC-TurboID-V5-dsRed_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135261", - "references": [], "kit": null, "file": "data/addgene_plasmids/135261.addgene-full.gb" }, @@ -64189,7 +80933,10 @@ "plasmid_name": "pDEST-HemmarG2", "sequence-type": "addgene-full", "addgene_id": "112814", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301736", + "https://www.ncbi.nlm.nih.gov/pubmed/30504366" + ], "kit": null, "file": "data/addgene_plasmids/112814.addgene-full.gb" }, @@ -64198,7 +80945,10 @@ "plasmid_name": "pDEST40-2XHA-Src-K298M-Y419F-Y530F", "sequence-type": "addgene-full", "addgene_id": "140320", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140320.addgene-full.gb" }, @@ -64207,7 +80957,10 @@ "plasmid_name": "pSLIK-IDH2-FLAG", "sequence-type": "depositor-full", "addgene_id": "66806", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + ], "kit": null, "file": "data/addgene_plasmids/66806.depositor-full.gb" }, @@ -64216,7 +80969,10 @@ "plasmid_name": "pDONRPEX18Gm-SceI-pheS", "sequence-type": "addgene-full", "addgene_id": "111609", - "references": [], + "references": [ + "https://doi.org/10.1128/AEM.03909-14", + "https://www.ncbi.nlm.nih.gov/pubmed/25795676" + ], "kit": null, "file": "data/addgene_plasmids/111609.addgene-full.gb" }, @@ -64225,7 +80981,10 @@ "plasmid_name": "PB-TAB-mOvol1", "sequence-type": "addgene-full", "addgene_id": "120360", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2018.12.008", + "https://www.ncbi.nlm.nih.gov/pubmed/30639212" + ], "kit": null, "file": "data/addgene_plasmids/120360.addgene-full.gb" }, @@ -64234,7 +80993,10 @@ "plasmid_name": "pDONR221_SLC22A5", "sequence-type": "addgene-full", "addgene_id": "132048", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132048.addgene-full.gb" }, @@ -64243,7 +81005,6 @@ "plasmid_name": "WNV NS2B-NS3 protease: Co-expression of NS2B and NS3", "sequence-type": "addgene-full", "addgene_id": "204806", - "references": [], "kit": null, "file": "data/addgene_plasmids/204806.addgene-full.gb" }, @@ -64252,7 +81013,6 @@ "plasmid_name": "R777-E023 Hs.CDK4", "sequence-type": "depositor-full", "addgene_id": "70307", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -64264,7 +81024,10 @@ "plasmid_name": "MAC_N_RAB5A", "sequence-type": "addgene-full", "addgene_id": "111692", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111692.addgene-full.gb" }, @@ -64273,7 +81036,6 @@ "plasmid_name": "pLenti_TetOn_Hu_HEC1(WT)", "sequence-type": "addgene-full", "addgene_id": "136353", - "references": [], "kit": null, "file": "data/addgene_plasmids/136353.addgene-full.gb" }, @@ -64282,7 +81044,10 @@ "plasmid_name": "pDL11", "sequence-type": "addgene-full", "addgene_id": "175906", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175906.addgene-full.gb" }, @@ -64291,7 +81056,10 @@ "plasmid_name": "pDONR223_RHOA_p.R5Q", "sequence-type": "addgene-full", "addgene_id": "81294", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -64303,7 +81071,10 @@ "plasmid_name": "pGWB454", "sequence-type": "depositor-full", "addgene_id": "74836", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74836.depositor-full.gb" }, @@ -64312,7 +81083,10 @@ "plasmid_name": "CRISPR-SB", "sequence-type": "addgene-full", "addgene_id": "177936", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-021-00677-0", + "https://www.ncbi.nlm.nih.gov/pubmed/35288718" + ], "kit": null, "file": "data/addgene_plasmids/177936.addgene-full.gb" }, @@ -64321,7 +81095,10 @@ "plasmid_name": "pYPQ-NF1-L2-dSpRY", "sequence-type": "addgene-full", "addgene_id": "177682", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.202100571", + "https://www.ncbi.nlm.nih.gov/pubmed/35377968" + ], "kit": null, "file": "data/addgene_plasmids/177682.addgene-full.gb" }, @@ -64330,7 +81107,10 @@ "plasmid_name": "pHAGE-JAG1-E228K", "sequence-type": "addgene-full", "addgene_id": "116420", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116420.addgene-full.gb" }, @@ -64339,7 +81119,10 @@ "plasmid_name": "pLEX307-mFzd9", "sequence-type": "addgene-full", "addgene_id": "102877", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "file": "data/addgene_plasmids/102877.addgene-full.gb" }, @@ -64348,7 +81131,10 @@ "plasmid_name": "pENTR-BIF1", "sequence-type": "addgene-full", "addgene_id": "188442", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188442.addgene-full.gb" }, @@ -64357,7 +81143,10 @@ "plasmid_name": "pGMCK-T38S38-750-luxAB-DAS+4", "sequence-type": "depositor-full", "addgene_id": "49518", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "file": "data/addgene_plasmids/49518.depositor-full.gb" }, @@ -64366,7 +81155,10 @@ "plasmid_name": "pHAGE-FLT1-V395I", "sequence-type": "addgene-full", "addgene_id": "116399", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116399.addgene-full.gb" }, @@ -64375,7 +81167,10 @@ "plasmid_name": "pDONR221-MTCH1_STOP", "sequence-type": "addgene-full", "addgene_id": "161108", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161108.addgene-full.gb" }, @@ -64384,7 +81179,10 @@ "plasmid_name": "pDONR223_PIK3R3_p.F380L", "sequence-type": "addgene-full", "addgene_id": "82764", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82764.addgene-full.gb" }, @@ -64393,7 +81191,10 @@ "plasmid_name": "tetO-MEF2C", "sequence-type": "addgene-full", "addgene_id": "46031", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "file": "data/addgene_plasmids/46031.addgene-full.gb" }, @@ -64402,7 +81203,10 @@ "plasmid_name": "pGGEV_2_Linker", "sequence-type": "depositor-full", "addgene_id": "49282", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -64414,7 +81218,9 @@ "plasmid_name": "pMpGWB420", "sequence-type": "depositor-full", "addgene_id": "68685", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68685.depositor-full.gb" }, @@ -64423,7 +81229,10 @@ "plasmid_name": "pHDT2:GUS", "sequence-type": "addgene-full", "addgene_id": "108444", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "file": "data/addgene_plasmids/108444.addgene-full.gb" }, @@ -64432,7 +81241,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP2", "sequence-type": "addgene-full", "addgene_id": "154401", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154401.addgene-full.gb" }, @@ -64441,7 +81253,10 @@ "plasmid_name": "pENT-L3-Titf-L4", "sequence-type": "addgene-full", "addgene_id": "186367", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186367.addgene-full.gb" }, @@ -64450,7 +81265,6 @@ "plasmid_name": "R777-E267 Hs.RASSF8", "sequence-type": "depositor-full", "addgene_id": "70551", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -64462,7 +81276,10 @@ "plasmid_name": "pCW57.1-p37-WT-FLAG", "sequence-type": "addgene-full", "addgene_id": "225501", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adl6082", + "https://www.ncbi.nlm.nih.gov/pubmed/38701207" + ], "kit": null, "file": "data/addgene_plasmids/225501.addgene-full.gb" }, @@ -64471,7 +81288,10 @@ "plasmid_name": "V5-K202R-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192084", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/192084.addgene-full.gb" }, @@ -64480,7 +81300,10 @@ "plasmid_name": "MAC_N_CCDC93", "sequence-type": "addgene-full", "addgene_id": "209687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209687.addgene-full.gb" }, @@ -64489,7 +81312,10 @@ "plasmid_name": "AdMKP-3 S159AS197A", "sequence-type": "addgene-full", "addgene_id": "131523", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mce.2012.03.025", + "https://www.ncbi.nlm.nih.gov/pubmed/22521266" + ], "kit": null, "file": "data/addgene_plasmids/131523.addgene-full.gb" }, @@ -64498,7 +81324,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp8", "sequence-type": "addgene-full", "addgene_id": "168850", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168850.addgene-full.gb" }, @@ -64507,7 +81336,10 @@ "plasmid_name": "pME-mKate2-KDEL-pA", "sequence-type": "addgene-full", "addgene_id": "109546", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109546.addgene-full.gb" }, @@ -64516,7 +81348,10 @@ "plasmid_name": "TFORF2986", "sequence-type": "addgene-full", "addgene_id": "144462", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144462.addgene-full.gb" }, @@ -64525,7 +81360,10 @@ "plasmid_name": "DDX11-1", "sequence-type": "addgene-full", "addgene_id": "155503", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155503.addgene-full.gb" }, @@ -64534,7 +81372,10 @@ "plasmid_name": "pDONR221 Nip7", "sequence-type": "depositor-full", "addgene_id": "63763", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63763.depositor-full.gb" }, @@ -64543,7 +81384,6 @@ "plasmid_name": "p667-UBC-CDK11B-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189914", - "references": [], "kit": null, "file": "data/addgene_plasmids/189914.addgene-full.gb" }, @@ -64552,7 +81392,10 @@ "plasmid_name": "pDONR223_KRAS_p.E62K", "sequence-type": "addgene-full", "addgene_id": "81656", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -64564,7 +81407,10 @@ "plasmid_name": "GNAS_pLX307", "sequence-type": "addgene-full", "addgene_id": "98339", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98339.addgene-full.gb" }, @@ -64573,7 +81419,10 @@ "plasmid_name": "pDONR221-SLC37A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161273", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161273.addgene-full.gb" }, @@ -64582,7 +81431,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hSFRP1-his", "sequence-type": "addgene-full", "addgene_id": "189540", - "references": [], "kit": null, "file": "data/addgene_plasmids/189540.addgene-full.gb" }, @@ -64591,7 +81439,10 @@ "plasmid_name": "pDONR221-SLC25A20_STOP", "sequence-type": "addgene-full", "addgene_id": "161193", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161193.addgene-full.gb" }, @@ -64600,7 +81451,9 @@ "plasmid_name": "pUB-spHRed", "sequence-type": "addgene-full", "addgene_id": "84734", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "file": "data/addgene_plasmids/84734.addgene-full.gb" }, @@ -64609,7 +81462,10 @@ "plasmid_name": "pYY1704", "sequence-type": "addgene-full", "addgene_id": "198421", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-022-01302-y", + "https://www.ncbi.nlm.nih.gov/pubmed/36550363" + ], "kit": null, "file": "data/addgene_plasmids/198421.addgene-full.gb" }, @@ -64618,7 +81474,10 @@ "plasmid_name": "pEBTet-SNAP-\u03b1-tubulin", "sequence-type": "addgene-full", "addgene_id": "136791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136791.addgene-full.gb" }, @@ -64627,7 +81486,10 @@ "plasmid_name": "pPB-EF1a-MegaGate-HA-Blast", "sequence-type": "addgene-full", "addgene_id": "175270", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175270.addgene-full.gb" }, @@ -64636,7 +81498,10 @@ "plasmid_name": "pME-minP:luc2", "sequence-type": "addgene-full", "addgene_id": "138354", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138354.addgene-full.gb" }, @@ -64645,7 +81510,10 @@ "plasmid_name": "pEBTet-SNAP-Cep152", "sequence-type": "addgene-full", "addgene_id": "136825", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136825.addgene-full.gb" }, @@ -64654,7 +81522,10 @@ "plasmid_name": "pFRT/TO/GFP-SCAF8 (CRISPR_resistant)", "sequence-type": "addgene-full", "addgene_id": "122472", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "file": "data/addgene_plasmids/122472.addgene-full.gb" }, @@ -64663,7 +81534,10 @@ "plasmid_name": "pDONR221_SLC22A7", "sequence-type": "addgene-full", "addgene_id": "131977", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131977.addgene-full.gb" }, @@ -64672,7 +81546,10 @@ "plasmid_name": "pcDNA3.2/Capsid", "sequence-type": "addgene-full", "addgene_id": "120816", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120816.addgene-full.gb" }, @@ -64681,7 +81558,10 @@ "plasmid_name": "TFORF3306", "sequence-type": "addgene-full", "addgene_id": "144782", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144782.addgene-full.gb" }, @@ -64690,7 +81570,10 @@ "plasmid_name": "TFORF3360", "sequence-type": "addgene-full", "addgene_id": "144836", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144836.addgene-full.gb" }, @@ -64699,7 +81582,10 @@ "plasmid_name": "pHAGE-EGFR-S380Pfs*16", "sequence-type": "addgene-full", "addgene_id": "116302", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116302.addgene-full.gb" }, @@ -64720,7 +81606,10 @@ "plasmid_name": "pDONR223_IRF4_WT", "sequence-type": "addgene-full", "addgene_id": "81782", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81782.addgene-full.gb" }, @@ -64729,7 +81618,10 @@ "plasmid_name": "pDONR223_CDKN1B_WT", "sequence-type": "addgene-full", "addgene_id": "81836", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -64741,7 +81633,10 @@ "plasmid_name": "pInducer10-SAE1_sh1", "sequence-type": "addgene-full", "addgene_id": "168984", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "file": "data/addgene_plasmids/168984.addgene-full.gb" }, @@ -64750,7 +81645,6 @@ "plasmid_name": "R777-E001 Hs.AKT1", "sequence-type": "depositor-full", "addgene_id": "70285", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -64762,7 +81656,10 @@ "plasmid_name": "actc1b-mKate2-DysF", "sequence-type": "addgene-full", "addgene_id": "109492", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109492.addgene-full.gb" }, @@ -64771,7 +81668,10 @@ "plasmid_name": "pMOS023E: Entry vector for: Peredox NADH/NAD+ sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163077", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163077.addgene-full.gb" }, @@ -64780,7 +81680,10 @@ "plasmid_name": "pMDJ231 - Phsp Cas9", "sequence-type": "addgene-full", "addgene_id": "191382", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "file": "data/addgene_plasmids/191382.addgene-full.gb" }, @@ -64789,7 +81692,10 @@ "plasmid_name": "pDONR223_ZNF454_p.R376I", "sequence-type": "addgene-full", "addgene_id": "81462", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -64801,7 +81707,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF8a", "sequence-type": "depositor-full", "addgene_id": "168858", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168858.depositor-full.gb" }, @@ -64810,7 +81719,10 @@ "plasmid_name": "pDONR223_ARAF_p.S214C_p.D429A", "sequence-type": "addgene-full", "addgene_id": "82904", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82904.addgene-full.gb" }, @@ -64819,7 +81731,10 @@ "plasmid_name": "LA001: pMVP (L3-L2) P2A-mCherry + WPRE", "sequence-type": "addgene-full", "addgene_id": "121774", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121774.addgene-full.gb" }, @@ -64828,7 +81743,10 @@ "plasmid_name": "pAFMW-Nbr[R272A,K276A]", "sequence-type": "addgene-full", "addgene_id": "188596", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188596.addgene-full.gb" }, @@ -64837,7 +81755,10 @@ "plasmid_name": "pSAM2_mCherry_SRF", "sequence-type": "addgene-full", "addgene_id": "72695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72695.addgene-full.gb" }, @@ -64846,7 +81767,10 @@ "plasmid_name": "TFORF3503", "sequence-type": "addgene-full", "addgene_id": "144979", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144979.addgene-full.gb" }, @@ -64855,7 +81779,10 @@ "plasmid_name": "pCR8-Magneto2.0-p2A-mCherry", "sequence-type": "depositor-full", "addgene_id": "74334", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4265", + "https://www.ncbi.nlm.nih.gov/pubmed/26950006" + ], "kit": null, "file": "data/addgene_plasmids/74334.depositor-full.gb" }, @@ -64864,7 +81791,10 @@ "plasmid_name": "pLX304-IRES-Td", "sequence-type": "addgene-full", "addgene_id": "176296", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abd6263", + "https://www.ncbi.nlm.nih.gov/pubmed/33547076" + ], "kit": null, "file": "data/addgene_plasmids/176296.addgene-full.gb" }, @@ -64873,7 +81803,10 @@ "plasmid_name": "TFORF3414", "sequence-type": "addgene-full", "addgene_id": "144890", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144890.addgene-full.gb" }, @@ -64882,7 +81815,10 @@ "plasmid_name": "pAAVS1-Nst-CAG-DEST", "sequence-type": "addgene-full", "addgene_id": "80489", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "file": "data/addgene_plasmids/80489.addgene-full.gb" }, @@ -64891,7 +81827,10 @@ "plasmid_name": "TFORF3248", "sequence-type": "addgene-full", "addgene_id": "144724", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144724.addgene-full.gb" }, @@ -64900,7 +81839,10 @@ "plasmid_name": "actc1b-mKate2-rab14", "sequence-type": "addgene-full", "addgene_id": "109600", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109600.addgene-full.gb" }, @@ -64909,7 +81851,10 @@ "plasmid_name": "pDON223 N S235F", "sequence-type": "addgene-full", "addgene_id": "180071", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180071.addgene-full.gb" }, @@ -64918,7 +81863,10 @@ "plasmid_name": "pDONR223_SMAD4_p.R361H", "sequence-type": "addgene-full", "addgene_id": "81510", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -64930,7 +81878,10 @@ "plasmid_name": "pDONR223 ATG3 C264A", "sequence-type": "addgene-full", "addgene_id": "129293", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129293.addgene-full.gb" }, @@ -64939,7 +81890,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_YH/GG", "sequence-type": "addgene-full", "addgene_id": "187123", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187123.addgene-full.gb" }, @@ -64948,7 +81902,10 @@ "plasmid_name": "pCMB-NUCr", "sequence-type": "depositor-full", "addgene_id": "61169", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61169.depositor-full.gb" }, @@ -64957,7 +81914,10 @@ "plasmid_name": "pDONR223_RBM45_p.M126I", "sequence-type": "addgene-full", "addgene_id": "82759", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82759.addgene-full.gb" }, @@ -64966,7 +81926,10 @@ "plasmid_name": "SUN2delCCec", "sequence-type": "addgene-full", "addgene_id": "130848", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130848.addgene-full.gb" }, @@ -64975,7 +81938,10 @@ "plasmid_name": "pDONR223_PPP2R1A_WT", "sequence-type": "addgene-full", "addgene_id": "81944", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81944.addgene-full.gb" }, @@ -64984,7 +81950,10 @@ "plasmid_name": "pAG305GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14306", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -64996,7 +81965,10 @@ "plasmid_name": "pAB(EXPR-PYL-HDAC3-NEO)", "sequence-type": "addgene-full", "addgene_id": "114394", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114394.addgene-full.gb" }, @@ -65005,7 +81977,10 @@ "plasmid_name": "pDONR221-TAF15 Stop", "sequence-type": "depositor-full", "addgene_id": "84895", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1109434108", + "https://www.ncbi.nlm.nih.gov/pubmed/22065782" + ], "kit": null, "file": "data/addgene_plasmids/84895.depositor-full.gb" }, @@ -65014,7 +81989,6 @@ "plasmid_name": "pCW57.1_V5_TurboID_FLAG_Nt", "sequence-type": "addgene-full", "addgene_id": "194072", - "references": [], "kit": null, "file": "data/addgene_plasmids/194072.addgene-full.gb" }, @@ -65023,7 +81997,10 @@ "plasmid_name": "pMXS-IRES-Blast 3XFLAG-CHP1", "sequence-type": "addgene-full", "addgene_id": "173166", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.01.037", + "https://www.ncbi.nlm.nih.gov/pubmed/30846317" + ], "kit": null, "file": "data/addgene_plasmids/173166.addgene-full.gb" }, @@ -65032,7 +82009,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-50", "sequence-type": "depositor-full", "addgene_id": "46656", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46656.depositor-full.gb" }, @@ -65041,7 +82021,10 @@ "plasmid_name": "pLenti-basP:fLuc-TK:rLuc", "sequence-type": "addgene-full", "addgene_id": "138369", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138369.addgene-full.gb" }, @@ -65050,7 +82033,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep57", "sequence-type": "addgene-full", "addgene_id": "136818", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136818.addgene-full.gb" }, @@ -65059,7 +82045,10 @@ "plasmid_name": "pDONR223_MDM2_p.E421Q", "sequence-type": "addgene-full", "addgene_id": "82876", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82876.addgene-full.gb" }, @@ -65068,7 +82057,6 @@ "plasmid_name": "R777-E077 Hs.EXOC6", "sequence-type": "depositor-full", "addgene_id": "70361", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -65080,7 +82068,10 @@ "plasmid_name": "pAAV2-DEST(f)", "sequence-type": "addgene-full", "addgene_id": "190226", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190226.addgene-full.gb" }, @@ -65089,7 +82080,10 @@ "plasmid_name": "pDEST17-ALDH1A1", "sequence-type": "addgene-full", "addgene_id": "189749", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "file": "data/addgene_plasmids/189749.addgene-full.gb" }, @@ -65098,7 +82092,10 @@ "plasmid_name": "p6328 pHAGE-P-CMVt-N-HA-GAW-HERC2-F4", "sequence-type": "addgene-full", "addgene_id": "100138", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100138.addgene-full.gb" }, @@ -65107,7 +82104,10 @@ "plasmid_name": "pLX302-PTP-SL-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87774", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "file": "data/addgene_plasmids/87774.addgene-full.gb" }, @@ -65116,7 +82116,10 @@ "plasmid_name": "pSGE_647_S2-1-eyg_dCP", "sequence-type": "depositor-full", "addgene_id": "71163", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71163.depositor-full.gb" }, @@ -65125,7 +82128,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP4_nostop", "sequence-type": "addgene-full", "addgene_id": "149307", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149307.addgene-full.gb" }, @@ -65134,7 +82140,10 @@ "plasmid_name": "pENTR R4-eGFP-R3", "sequence-type": "depositor-full", "addgene_id": "32312", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32312.depositor-full.gb" }, @@ -65143,7 +82152,10 @@ "plasmid_name": "pGWB508", "sequence-type": "depositor-full", "addgene_id": "74850", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74850.depositor-full.gb" }, @@ -65152,7 +82164,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PHKG2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158186", - "references": [], "kit": null, "file": "data/addgene_plasmids/158186.addgene-full.gb" }, @@ -65161,7 +82172,10 @@ "plasmid_name": "pAG426GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14348", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -65173,7 +82187,10 @@ "plasmid_name": "pE5n", "sequence-type": "depositor-full", "addgene_id": "17459", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17459.depositor-full.gb" }, @@ -65182,7 +82199,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_DelCTerm_1-223AA", "sequence-type": "addgene-full", "addgene_id": "221488", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221488.addgene-full.gb" }, @@ -65191,7 +82211,6 @@ "plasmid_name": "CMYA5tnC/pDEST26-N-FLAG", "sequence-type": "addgene-full", "addgene_id": "98130", - "references": [], "kit": null, "file": "data/addgene_plasmids/98130.addgene-full.gb" }, @@ -65200,7 +82219,10 @@ "plasmid_name": "JP705: pMVP/SB/Neo-DEST", "sequence-type": "addgene-full", "addgene_id": "121866", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121866.addgene-full.gb" }, @@ -65209,7 +82231,10 @@ "plasmid_name": "KG901: pMVP (L3-L2) HA epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121749", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121749.addgene-full.gb" }, @@ -65218,7 +82243,10 @@ "plasmid_name": "pDONR221-eGFP", "sequence-type": "addgene-full", "addgene_id": "221413", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221413.addgene-full.gb" }, @@ -65227,7 +82255,10 @@ "plasmid_name": "pDONR223_DNTTIP2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82939", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82939.addgene-full.gb" }, @@ -65236,7 +82267,10 @@ "plasmid_name": "pHAGE-EGFR-L747_T751delLREAT", "sequence-type": "addgene-full", "addgene_id": "116270", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116270.addgene-full.gb" }, @@ -65245,7 +82279,9 @@ "plasmid_name": "pME-tdTomato no stop", "sequence-type": "depositor-full", "addgene_id": "82404", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82404.depositor-full.gb" }, @@ -65254,7 +82290,10 @@ "plasmid_name": "TFORF3468", "sequence-type": "addgene-full", "addgene_id": "144944", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144944.addgene-full.gb" }, @@ -65263,7 +82302,10 @@ "plasmid_name": "TFORF3034", "sequence-type": "addgene-full", "addgene_id": "144510", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144510.addgene-full.gb" }, @@ -65272,7 +82314,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP12_nostop", "sequence-type": "addgene-full", "addgene_id": "168696", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168696.addgene-full.gb" }, @@ -65281,7 +82326,6 @@ "plasmid_name": "R777-E322 Hs.SPRED1-nostop", "sequence-type": "depositor-full", "addgene_id": "70606", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -65293,7 +82337,10 @@ "plasmid_name": "pHAGE-BRAF-P403Lfs*8", "sequence-type": "addgene-full", "addgene_id": "116190", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116190.addgene-full.gb" }, @@ -65302,7 +82349,10 @@ "plasmid_name": "pDONR221-SLC35A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161301", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161301.addgene-full.gb" }, @@ -65311,7 +82361,10 @@ "plasmid_name": "pDONR223_THEMIS_WT", "sequence-type": "addgene-full", "addgene_id": "81890", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -65323,7 +82376,10 @@ "plasmid_name": "pCFJ1209", "sequence-type": "depositor-full", "addgene_id": "44491", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44491.depositor-full.gb" }, @@ -65332,7 +82388,10 @@ "plasmid_name": "pDONR223_MTM1_p.R253Q", "sequence-type": "addgene-full", "addgene_id": "81724", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -65344,7 +82403,10 @@ "plasmid_name": "pENTR_Hu_Plk5(WT)", "sequence-type": "addgene-full", "addgene_id": "136329", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.00607-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21245385" + ], "kit": null, "file": "data/addgene_plasmids/136329.addgene-full.gb" }, @@ -65353,7 +82415,10 @@ "plasmid_name": "pCPP5099", "sequence-type": "addgene-full", "addgene_id": "128714", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128714.addgene-full.gb" }, @@ -65362,7 +82427,10 @@ "plasmid_name": "pDONR221_SLC26A4", "sequence-type": "addgene-full", "addgene_id": "132032", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132032.addgene-full.gb" }, @@ -65371,7 +82439,6 @@ "plasmid_name": "pDONR221-mis18a", "sequence-type": "addgene-full", "addgene_id": "192747", - "references": [], "kit": null, "file": "data/addgene_plasmids/192747.addgene-full.gb" }, @@ -65380,7 +82447,10 @@ "plasmid_name": "SFRS2IP", "sequence-type": "addgene-full", "addgene_id": "156012", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156012.addgene-full.gb" }, @@ -65389,7 +82459,9 @@ "plasmid_name": "pCW57.1-FOXM1c", "sequence-type": "addgene-full", "addgene_id": "68810", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26243836" + ], "kit": null, "file": "data/addgene_plasmids/68810.addgene-full.gb" }, @@ -65398,7 +82470,10 @@ "plasmid_name": "pK7WG2-mitoTAL2-orf125", "sequence-type": "addgene-full", "addgene_id": "158737", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-019-0459-z", + "https://www.ncbi.nlm.nih.gov/pubmed/31285556" + ], "kit": null, "file": "data/addgene_plasmids/158737.addgene-full.gb" }, @@ -65407,7 +82482,6 @@ "plasmid_name": "pDEST26-Nluc-hDHX58", "sequence-type": "addgene-full", "addgene_id": "197625", - "references": [], "kit": null, "file": "data/addgene_plasmids/197625.addgene-full.gb" }, @@ -65416,7 +82490,10 @@ "plasmid_name": "pCAGIG_V5-PPP6C", "sequence-type": "depositor-full", "addgene_id": "92013", - "references": [], + "references": [ + "https://doi.org/10.1038/nature21025", + "https://www.ncbi.nlm.nih.gov/pubmed/28114302" + ], "kit": null, "file": "data/addgene_plasmids/92013.depositor-full.gb" }, @@ -65425,7 +82502,10 @@ "plasmid_name": "pHAGE DN Cullin4A", "sequence-type": "addgene-full", "addgene_id": "41914", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2011.09.019", + "https://www.ncbi.nlm.nih.gov/pubmed/21963094" + ], "kit": null, "file": "data/addgene_plasmids/41914.addgene-full.gb" }, @@ -65434,7 +82514,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP4", "sequence-type": "addgene-full", "addgene_id": "141258", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141258.addgene-full.gb" }, @@ -65443,7 +82526,6 @@ "plasmid_name": "pHAGE-CMV-Flag-AAK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135280", - "references": [], "kit": null, "file": "data/addgene_plasmids/135280.addgene-full.gb" }, @@ -65452,7 +82534,10 @@ "plasmid_name": "pMuLE ENTR SFFV L5-L2", "sequence-type": "depositor-full", "addgene_id": "62098", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62098.depositor-full.gb" }, @@ -65461,7 +82546,10 @@ "plasmid_name": "PLEX_313 GFP", "sequence-type": "addgene-full", "addgene_id": "184494", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abf0529", + "https://www.ncbi.nlm.nih.gov/pubmed/35298263" + ], "kit": null, "file": "data/addgene_plasmids/184494.addgene-full.gb" }, @@ -65470,7 +82558,6 @@ "plasmid_name": "IDG_CACNG1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161650", - "references": [], "kit": null, "file": "data/addgene_plasmids/161650.addgene-full.gb" }, @@ -65479,7 +82566,10 @@ "plasmid_name": "pENTR-R4R3-mRuby-C", "sequence-type": "depositor-full", "addgene_id": "113755", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -65491,7 +82581,10 @@ "plasmid_name": "pDONR223_H2AFX_p.K134N", "sequence-type": "addgene-full", "addgene_id": "81275", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -65503,7 +82596,10 @@ "plasmid_name": "pTol2CG2-hsp70I:QFGal4-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155120", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155120.addgene-full.gb" }, @@ -65512,7 +82608,10 @@ "plasmid_name": "pHAGE-CCND1", "sequence-type": "addgene-full", "addgene_id": "116721", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116721.addgene-full.gb" }, @@ -65521,7 +82620,10 @@ "plasmid_name": "TOB1", "sequence-type": "addgene-full", "addgene_id": "156089", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156089.addgene-full.gb" }, @@ -65530,7 +82632,10 @@ "plasmid_name": "CYFIP1.mCherry", "sequence-type": "addgene-full", "addgene_id": "122051", - "references": [], + "references": [ + "https://doi.org/10.1038/tp.2014.16", + "https://www.ncbi.nlm.nih.gov/pubmed/24667445" + ], "kit": null, "file": "data/addgene_plasmids/122051.addgene-full.gb" }, @@ -65539,7 +82644,10 @@ "plasmid_name": "MAC_C_PLRKT", "sequence-type": "addgene-full", "addgene_id": "111673", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111673.addgene-full.gb" }, @@ -65548,7 +82656,10 @@ "plasmid_name": "p35S-mKO2", "sequence-type": "addgene-full", "addgene_id": "182724", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182724.addgene-full.gb" }, @@ -65557,7 +82668,10 @@ "plasmid_name": "pDestTol2pA2-blasticidin--3.5ubb:plin2-tdtomato", "sequence-type": "addgene-full", "addgene_id": "172535", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64744", + "https://www.ncbi.nlm.nih.gov/pubmed/34114952" + ], "kit": null, "file": "data/addgene_plasmids/172535.addgene-full.gb" }, @@ -65566,7 +82680,6 @@ "plasmid_name": "pENTR223 ACE2, open", "sequence-type": "addgene-full", "addgene_id": "149719", - "references": [], "kit": null, "file": "data/addgene_plasmids/149719.addgene-full.gb" }, @@ -65575,7 +82688,10 @@ "plasmid_name": "pHAGE-PIK3CA-N1068Kfs*5", "sequence-type": "addgene-full", "addgene_id": "116515", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116515.addgene-full.gb" }, @@ -65584,7 +82700,10 @@ "plasmid_name": "pMALB", "sequence-type": "addgene-full", "addgene_id": "161784", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2013.11.021", + "https://www.ncbi.nlm.nih.gov/pubmed/24388174" + ], "kit": null, "file": "data/addgene_plasmids/161784.addgene-full.gb" }, @@ -65593,7 +82712,10 @@ "plasmid_name": "pCFJ2240 - [1-2] ENTR - Fluor - ce-tagRFP-T (1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159855", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159855.addgene-full.gb" }, @@ -65602,7 +82724,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST QKI", "sequence-type": "depositor-full", "addgene_id": "19891", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19891.depositor-full.gb" }, @@ -65611,7 +82736,10 @@ "plasmid_name": "MAC_C_STYK1", "sequence-type": "addgene-full", "addgene_id": "187792", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187792.addgene-full.gb" }, @@ -65620,7 +82748,10 @@ "plasmid_name": "pMuLE ENTR U6 n.s shRNA L1-R5", "sequence-type": "addgene-full", "addgene_id": "62135", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62135.addgene-full.gb" }, @@ -65629,7 +82760,10 @@ "plasmid_name": "pDONR223_ESR1_WT", "sequence-type": "addgene-full", "addgene_id": "82208", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82208.addgene-full.gb" }, @@ -65638,7 +82772,9 @@ "plasmid_name": "pMpGWB327", "sequence-type": "depositor-full", "addgene_id": "68655", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68655.depositor-full.gb" }, @@ -65647,7 +82783,10 @@ "plasmid_name": "p5Edll4E1", "sequence-type": "addgene-full", "addgene_id": "90120", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90120.addgene-full.gb" }, @@ -65656,7 +82795,10 @@ "plasmid_name": "pQCXIH CMV/TO DEST (w382-1)", "sequence-type": "addgene-full", "addgene_id": "17394", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17394.addgene-full.gb" }, @@ -65665,7 +82807,10 @@ "plasmid_name": "pDONR221-UNC93B1_STOP", "sequence-type": "addgene-full", "addgene_id": "161464", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161464.addgene-full.gb" }, @@ -65674,7 +82819,6 @@ "plasmid_name": "R777-E297 Hs.RPS6KB1", "sequence-type": "depositor-full", "addgene_id": "70581", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -65686,7 +82830,10 @@ "plasmid_name": "His8:MBP-tev-Tyr-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83391", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.14497", + "https://www.ncbi.nlm.nih.gov/pubmed/28277608" + ], "kit": null, "file": "data/addgene_plasmids/83391.addgene-full.gb" }, @@ -65695,7 +82842,10 @@ "plasmid_name": "pAG304GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14232", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -65707,7 +82857,10 @@ "plasmid_name": "GFP-PBRM1", "sequence-type": "addgene-full", "addgene_id": "65387", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65387.addgene-full.gb" }, @@ -65716,7 +82869,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD8-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113477", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113477.addgene-full.gb" }, @@ -65725,7 +82881,10 @@ "plasmid_name": "pDONR223 GABARAPL2 G116A", "sequence-type": "addgene-full", "addgene_id": "123087", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123087.addgene-full.gb" }, @@ -65734,7 +82893,10 @@ "plasmid_name": "TFORF3509", "sequence-type": "depositor-full", "addgene_id": "144985", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144985.depositor-full.gb" }, @@ -65743,7 +82905,10 @@ "plasmid_name": "pPB-cT3G-cERP2-TAF4B", "sequence-type": "addgene-full", "addgene_id": "192927", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192927.addgene-full.gb" }, @@ -65752,7 +82917,9 @@ "plasmid_name": "p3E-mKate2-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "80810", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80810.depositor-full.gb" }, @@ -65761,7 +82928,10 @@ "plasmid_name": "pDONR223_ACVR1B_WT", "sequence-type": "addgene-full", "addgene_id": "82293", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82293.addgene-full.gb" }, @@ -65770,7 +82940,10 @@ "plasmid_name": "C232-E05: attB2r-meGFP-attB3", "sequence-type": "addgene-full", "addgene_id": "162902", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -65782,7 +82955,10 @@ "plasmid_name": "Flag-HA-USP53", "sequence-type": "addgene-full", "addgene_id": "22606", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22606.addgene-full.gb" }, @@ -65791,7 +82967,10 @@ "plasmid_name": "pDONR223_BMPR1B_p.Q203D", "sequence-type": "addgene-full", "addgene_id": "82173", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82173.addgene-full.gb" }, @@ -65800,7 +82979,10 @@ "plasmid_name": "pENTR-EF1adCas9VP64_T2A_MS2p65HSF1-IRESneopA", "sequence-type": "addgene-full", "addgene_id": "112921", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-018-1581-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30477585" + ], "kit": null, "file": "data/addgene_plasmids/112921.addgene-full.gb" }, @@ -65809,7 +82991,10 @@ "plasmid_name": "pUBQ10-GW", "sequence-type": "addgene-full", "addgene_id": "209370", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209370.addgene-full.gb" }, @@ -65818,7 +83003,10 @@ "plasmid_name": "pDONR221_SLC5A7", "sequence-type": "addgene-full", "addgene_id": "132206", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132206.addgene-full.gb" }, @@ -65827,7 +83015,10 @@ "plasmid_name": "pCFJ1149 - intron 3 smu-2 PATCs", "sequence-type": "addgene-full", "addgene_id": "161516", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/161516.addgene-full.gb" }, @@ -65836,7 +83027,10 @@ "plasmid_name": "pCellFree_G03 WWP1", "sequence-type": "addgene-full", "addgene_id": "67125", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "file": "data/addgene_plasmids/67125.addgene-full.gb" }, @@ -65845,7 +83039,10 @@ "plasmid_name": "R701-X24-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) Q61R", "sequence-type": "addgene-full", "addgene_id": "159573", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159573.addgene-full.gb" }, @@ -65854,7 +83051,10 @@ "plasmid_name": "pAG305GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14402", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -65866,7 +83066,10 @@ "plasmid_name": "pCPP5052", "sequence-type": "addgene-full", "addgene_id": "128729", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128729.addgene-full.gb" }, @@ -65875,7 +83078,10 @@ "plasmid_name": "GFP-CYLD-STOP", "sequence-type": "addgene-full", "addgene_id": "60077", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0703268104", + "https://www.ncbi.nlm.nih.gov/pubmed/17495026" + ], "kit": null, "file": "data/addgene_plasmids/60077.addgene-full.gb" }, @@ -65884,7 +83090,10 @@ "plasmid_name": "pDEST-FRT/T0-GFP-BRCA1", "sequence-type": "addgene-full", "addgene_id": "71116", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71116.addgene-full.gb" }, @@ -65893,7 +83102,10 @@ "plasmid_name": "pHAGE-RET", "sequence-type": "addgene-full", "addgene_id": "116787", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116787.addgene-full.gb" }, @@ -65902,7 +83114,10 @@ "plasmid_name": "pHAGE-PIK3CA-E1037K", "sequence-type": "addgene-full", "addgene_id": "116467", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116467.addgene-full.gb" }, @@ -65911,7 +83126,10 @@ "plasmid_name": "pCDF-Frb-v1", "sequence-type": "addgene-full", "addgene_id": "201923", - "references": [], + "references": [ + "https://doi.org/10.1021/acscentsci.3c00191", + "https://www.ncbi.nlm.nih.gov/pubmed/37122473" + ], "kit": null, "file": "data/addgene_plasmids/201923.addgene-full.gb" }, @@ -65920,7 +83138,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) RALB", "sequence-type": "addgene-full", "addgene_id": "107506", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107506.addgene-full.gb" }, @@ -65929,7 +83150,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP12", "sequence-type": "addgene-full", "addgene_id": "141265", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141265.addgene-full.gb" }, @@ -65938,7 +83162,10 @@ "plasmid_name": "pGWB550", "sequence-type": "depositor-full", "addgene_id": "74880", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74880.depositor-full.gb" }, @@ -65947,7 +83174,10 @@ "plasmid_name": "pDONR223-AK2", "sequence-type": "addgene-full", "addgene_id": "23676", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -65959,7 +83189,10 @@ "plasmid_name": "pAG303GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14398", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -65971,7 +83204,10 @@ "plasmid_name": "R701-X65-527: His6-tev-Hs.CALM1(2-148)", "sequence-type": "addgene-full", "addgene_id": "159693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.bpj.2019.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30846362" + ], "kit": null, "file": "data/addgene_plasmids/159693.addgene-full.gb" }, @@ -65980,7 +83216,10 @@ "plasmid_name": "pME GFP-DCX", "sequence-type": "addgene-full", "addgene_id": "105962", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105962.addgene-full.gb" }, @@ -65989,7 +83228,6 @@ "plasmid_name": "pSMPUW_6.16_ M4_Ef1a-gateway-V5-SV40-Zeo", "sequence-type": "addgene-full", "addgene_id": "128452", - "references": [], "kit": null, "file": "data/addgene_plasmids/128452.addgene-full.gb" }, @@ -65998,7 +83236,10 @@ "plasmid_name": "pDEST-CMV-N-mCherry", "sequence-type": "addgene-full", "addgene_id": "123215", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123215.addgene-full.gb" }, @@ -66007,7 +83248,6 @@ "plasmid_name": "pENTR-R2L3-IRES-bgeo-pA", "sequence-type": "addgene-full", "addgene_id": "139533", - "references": [], "kit": null, "file": "data/addgene_plasmids/139533.addgene-full.gb" }, @@ -66016,7 +83256,10 @@ "plasmid_name": "hIRE1a wt", "sequence-type": "addgene-full", "addgene_id": "20744", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0001648", + "https://www.ncbi.nlm.nih.gov/pubmed/18286202" + ], "kit": null, "file": "data/addgene_plasmids/20744.addgene-full.gb" }, @@ -66025,7 +83268,10 @@ "plasmid_name": "pJH201_pE12_hyCal7-mCherry", "sequence-type": "addgene-full", "addgene_id": "160414", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160414.addgene-full.gb" }, @@ -66034,7 +83280,10 @@ "plasmid_name": "pAG413GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14165", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -66046,7 +83295,10 @@ "plasmid_name": "pDONR221_SLC38A7", "sequence-type": "addgene-full", "addgene_id": "132094", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132094.addgene-full.gb" }, @@ -66055,7 +83307,6 @@ "plasmid_name": "pLEX307-CTSS-G418", "sequence-type": "addgene-full", "addgene_id": "158471", - "references": [], "kit": null, "file": "data/addgene_plasmids/158471.addgene-full.gb" }, @@ -66064,7 +83315,9 @@ "plasmid_name": "pLgw-MBD3-V5-Dam", "sequence-type": "addgene-full", "addgene_id": "55605", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24385926" + ], "kit": null, "file": "data/addgene_plasmids/55605.addgene-full.gb" }, @@ -66073,7 +83326,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-Swa1::RfA-ECFP", "sequence-type": "addgene-full", "addgene_id": "186402", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186402.addgene-full.gb" }, @@ -66082,7 +83338,10 @@ "plasmid_name": "pHAGE-PIK3CA-Q546L", "sequence-type": "addgene-full", "addgene_id": "116528", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116528.addgene-full.gb" }, @@ -66091,7 +83350,6 @@ "plasmid_name": "pDD376", "sequence-type": "addgene-full", "addgene_id": "137022", - "references": [], "kit": null, "file": "data/addgene_plasmids/137022.addgene-full.gb" }, @@ -66100,7 +83358,10 @@ "plasmid_name": "MAC_N_KLF6", "sequence-type": "addgene-full", "addgene_id": "167772", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167772.addgene-full.gb" }, @@ -66109,7 +83370,10 @@ "plasmid_name": "pDONR221-SLCO3A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161459", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161459.addgene-full.gb" }, @@ -66118,7 +83382,10 @@ "plasmid_name": "Flag-HA-BRCC3", "sequence-type": "addgene-full", "addgene_id": "22540", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22540.addgene-full.gb" }, @@ -66127,7 +83394,6 @@ "plasmid_name": "R777-E181 Hs.PIK3R6", "sequence-type": "depositor-full", "addgene_id": "70465", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -66139,7 +83405,10 @@ "plasmid_name": "pDE43-MCKq19", "sequence-type": "depositor-full", "addgene_id": "27286", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0015667", + "https://www.ncbi.nlm.nih.gov/pubmed/21203517" + ], "kit": null, "file": "data/addgene_plasmids/27286.depositor-full.gb" }, @@ -66148,7 +83417,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0495-luc2", "sequence-type": "addgene-full", "addgene_id": "214642", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214642.addgene-full.gb" }, @@ -66157,7 +83429,10 @@ "plasmid_name": "pDONR223_STAT3_WT", "sequence-type": "addgene-full", "addgene_id": "82235", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82235.addgene-full.gb" }, @@ -66166,7 +83441,10 @@ "plasmid_name": "pGC451", "sequence-type": "depositor-full", "addgene_id": "19692", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19692.depositor-full.gb" }, @@ -66175,7 +83453,10 @@ "plasmid_name": "pMuLE ENTR CMV-hCas9 R4-R3", "sequence-type": "depositor-full", "addgene_id": "62132", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62132.depositor-full.gb" }, @@ -66184,7 +83465,10 @@ "plasmid_name": "pENTR223-BNLF2a", "sequence-type": "addgene-full", "addgene_id": "195767", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195767.addgene-full.gb" }, @@ -66193,7 +83477,10 @@ "plasmid_name": "pDONR221_SLC26A9", "sequence-type": "addgene-full", "addgene_id": "132140", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132140.addgene-full.gb" }, @@ -66202,7 +83489,10 @@ "plasmid_name": "pENTR-L5-mCherry-L2", "sequence-type": "depositor-full", "addgene_id": "32416", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32416.depositor-full.gb" }, @@ -66211,7 +83501,6 @@ "plasmid_name": "MECP2 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216592", - "references": [], "kit": null, "file": "data/addgene_plasmids/216592.addgene-full.gb" }, @@ -66220,7 +83509,10 @@ "plasmid_name": "pENTR-L3-eSpCas9(1.1)-2A-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141051", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141051.addgene-full.gb" }, @@ -66229,7 +83521,10 @@ "plasmid_name": "pHAGE-RAF1-H466R", "sequence-type": "addgene-full", "addgene_id": "116653", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116653.addgene-full.gb" }, @@ -66238,7 +83533,10 @@ "plasmid_name": "pDL18", "sequence-type": "addgene-full", "addgene_id": "175895", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175895.addgene-full.gb" }, @@ -66247,7 +83545,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir28-3", "sequence-type": "depositor-full", "addgene_id": "46686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46686.depositor-full.gb" }, @@ -66256,7 +83557,10 @@ "plasmid_name": "pDONR223_CDKN1B_p.C29F", "sequence-type": "addgene-full", "addgene_id": "81307", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -66268,7 +83572,10 @@ "plasmid_name": "pDest-311 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161896", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -66280,7 +83587,10 @@ "plasmid_name": "MAC_N_KLF10", "sequence-type": "addgene-full", "addgene_id": "187734", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187734.addgene-full.gb" }, @@ -66289,7 +83599,10 @@ "plasmid_name": "pDONR P2R-P3-EGFP", "sequence-type": "depositor-full", "addgene_id": "48349", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -66301,7 +83614,6 @@ "plasmid_name": "pAG416GALL-HIV-1_PR", "sequence-type": "addgene-full", "addgene_id": "203493", - "references": [], "kit": null, "file": "data/addgene_plasmids/203493.addgene-full.gb" }, @@ -66310,7 +83622,10 @@ "plasmid_name": "pAG304GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14375", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -66322,7 +83637,10 @@ "plasmid_name": "TFORF3220", "sequence-type": "addgene-full", "addgene_id": "144696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144696.addgene-full.gb" }, @@ -66331,7 +83649,10 @@ "plasmid_name": "pSLIK-Zeo", "sequence-type": "depositor-full", "addgene_id": "25736", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0606179103", + "https://www.ncbi.nlm.nih.gov/pubmed/16945906" + ], "kit": null, "file": "data/addgene_plasmids/25736.depositor-full.gb" }, @@ -66340,7 +83661,10 @@ "plasmid_name": "TFORF3446", "sequence-type": "addgene-full", "addgene_id": "144922", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144922.addgene-full.gb" }, @@ -66349,7 +83673,10 @@ "plasmid_name": "plenti-UbcP-Myc-YWAA-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107377", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107377.addgene-full.gb" }, @@ -66358,7 +83685,10 @@ "plasmid_name": "pGC238", "sequence-type": "depositor-full", "addgene_id": "19631", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19631.depositor-full.gb" }, @@ -66367,7 +83697,10 @@ "plasmid_name": "PPP1CA", "sequence-type": "addgene-full", "addgene_id": "155843", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155843.addgene-full.gb" }, @@ -66376,7 +83709,10 @@ "plasmid_name": "pE4c", "sequence-type": "depositor-full", "addgene_id": "17464", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17464.depositor-full.gb" }, @@ -66385,7 +83721,10 @@ "plasmid_name": "pGGW_SM_BamHI", "sequence-type": "depositor-full", "addgene_id": "49315", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -66397,7 +83736,10 @@ "plasmid_name": "pDONR223_NKX2-1_DelNTerm_160-371AA", "sequence-type": "addgene-full", "addgene_id": "221475", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221475.addgene-full.gb" }, @@ -66406,7 +83748,10 @@ "plasmid_name": "E42_control_NGFR", "sequence-type": "addgene-full", "addgene_id": "189800", - "references": [], + "references": [ + "https://doi.org/10.1038/s41590-018-0238-4", + "https://www.ncbi.nlm.nih.gov/pubmed/30374131" + ], "kit": null, "file": "data/addgene_plasmids/189800.addgene-full.gb" }, @@ -66427,7 +83772,10 @@ "plasmid_name": "pMMK ENTR 1 CMV EYFP Tubulin", "sequence-type": "addgene-full", "addgene_id": "206254", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206254.addgene-full.gb" }, @@ -66436,7 +83784,10 @@ "plasmid_name": "pME-mCD8mCherry", "sequence-type": "addgene-full", "addgene_id": "170206", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-020-0703-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32895565" + ], "kit": null, "file": "data/addgene_plasmids/170206.addgene-full.gb" }, @@ -66445,7 +83796,9 @@ "plasmid_name": "pME-3xNLS-mTagBFP2-Cre (JDW 918)", "sequence-type": "addgene-full", "addgene_id": "224517", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224517.addgene-full.gb" }, @@ -66454,7 +83807,10 @@ "plasmid_name": "pDONR221-SLC3A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161367", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161367.addgene-full.gb" }, @@ -66463,7 +83819,10 @@ "plasmid_name": "TFORF3100", "sequence-type": "addgene-full", "addgene_id": "144576", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144576.addgene-full.gb" }, @@ -66472,7 +83831,10 @@ "plasmid_name": "pAG306GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14188", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -66484,7 +83846,9 @@ "plasmid_name": "pPB-cT3G-cERP2-MYBL1", "sequence-type": "addgene-full", "addgene_id": "222547", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222547.addgene-full.gb" }, @@ -66493,7 +83857,10 @@ "plasmid_name": "p{3P3-dsRed::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182168", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182168.addgene-full.gb" }, @@ -66502,7 +83869,10 @@ "plasmid_name": "A1-LCD-23S+23T", "sequence-type": "addgene-full", "addgene_id": "178693", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178693.addgene-full.gb" }, @@ -66511,7 +83881,10 @@ "plasmid_name": "pDONR221-FOXD4L3", "sequence-type": "depositor-full", "addgene_id": "101491", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101491.depositor-full.gb" }, @@ -66529,7 +83902,10 @@ "plasmid_name": "KA801: pMVP (L3-L2) HA tag + pA; CMV::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121800", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121800.addgene-full.gb" }, @@ -66538,7 +83914,10 @@ "plasmid_name": "pDONR223_TBL1XR1_p.L81V", "sequence-type": "addgene-full", "addgene_id": "81439", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -66550,7 +83929,10 @@ "plasmid_name": "pGCS-N5(GST)", "sequence-type": "addgene-full", "addgene_id": "85722", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -66562,7 +83944,10 @@ "plasmid_name": "pME-mKate2-NS", "sequence-type": "addgene-full", "addgene_id": "109729", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109729.addgene-full.gb" }, @@ -66571,7 +83956,10 @@ "plasmid_name": "LIIc F 5-6", "sequence-type": "depositor-full", "addgene_id": "54372", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54372.depositor-full.gb" }, @@ -66580,7 +83968,10 @@ "plasmid_name": "pAC1815_pCR8-gSMN2-DN3", "sequence-type": "addgene-full", "addgene_id": "118648", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118648.addgene-full.gb" }, @@ -66589,7 +83980,10 @@ "plasmid_name": "PCBP1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98362", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98362.addgene-full.gb" }, @@ -66598,7 +83992,6 @@ "plasmid_name": "R777-E204 Hs.PRKAG3-nostop", "sequence-type": "depositor-full", "addgene_id": "70488", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -66610,7 +84003,10 @@ "plasmid_name": "pDONR221-SLC35E3_STOP", "sequence-type": "addgene-full", "addgene_id": "161228", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161228.addgene-full.gb" }, @@ -66619,7 +84015,10 @@ "plasmid_name": "pGWB429", "sequence-type": "depositor-full", "addgene_id": "74823", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74823.depositor-full.gb" }, @@ -66628,7 +84027,10 @@ "plasmid_name": "pDONR221-ZNF222", "sequence-type": "depositor-full", "addgene_id": "101622", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101622.depositor-full.gb" }, @@ -66637,7 +84039,6 @@ "plasmid_name": "pEF1a-PEmax-P2A-GFP", "sequence-type": "addgene-full", "addgene_id": "202000", - "references": [], "kit": null, "file": "data/addgene_plasmids/202000.addgene-full.gb" }, @@ -66646,7 +84047,10 @@ "plasmid_name": "pGL3-MTS-G3635A-L17-Q2L7-T2176N-UGI-Puro", "sequence-type": "addgene-full", "addgene_id": "209647", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-42359-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37857619" + ], "kit": null, "file": "data/addgene_plasmids/209647.addgene-full.gb" }, @@ -66655,7 +84059,10 @@ "plasmid_name": "TFORF2963", "sequence-type": "addgene-full", "addgene_id": "144439", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144439.addgene-full.gb" }, @@ -66664,7 +84071,10 @@ "plasmid_name": "pHAGE-ERBB2-V842I", "sequence-type": "addgene-full", "addgene_id": "116359", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116359.addgene-full.gb" }, @@ -66673,7 +84083,6 @@ "plasmid_name": "R777-E028 Hs.CNKSR1-nostop", "sequence-type": "depositor-full", "addgene_id": "70312", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -66685,7 +84094,10 @@ "plasmid_name": "pCW-Flag-CtIP-T847E", "sequence-type": "depositor-full", "addgene_id": "71110", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71110.depositor-full.gb" }, @@ -66694,7 +84106,10 @@ "plasmid_name": "pDONR223_BRAF_p.R682W", "sequence-type": "addgene-full", "addgene_id": "82810", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82810.addgene-full.gb" }, @@ -66703,7 +84118,10 @@ "plasmid_name": "pDEST-ERBB2-v2", "sequence-type": "addgene-full", "addgene_id": "154895", - "references": [], + "references": [ + "https://doi.org/10.1038/s41388-020-01604-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33420373" + ], "kit": null, "file": "data/addgene_plasmids/154895.addgene-full.gb" }, @@ -66712,7 +84130,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-PES1", "sequence-type": "depositor-full", "addgene_id": "38085", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38085.depositor-full.gb" }, @@ -66721,7 +84142,10 @@ "plasmid_name": "pDONR223_FBXW7_p.I347M", "sequence-type": "addgene-full", "addgene_id": "81576", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -66733,7 +84157,10 @@ "plasmid_name": "pDe-CAS9", "sequence-type": "depositor-full", "addgene_id": "61433", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12554", + "https://www.ncbi.nlm.nih.gov/pubmed/24836556" + ], "kit": null, "file": "data/addgene_plasmids/61433.depositor-full.gb" }, @@ -66742,7 +84169,10 @@ "plasmid_name": "p3E-rab12", "sequence-type": "addgene-full", "addgene_id": "109666", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109666.addgene-full.gb" }, @@ -66751,7 +84181,10 @@ "plasmid_name": "TFORF3266", "sequence-type": "addgene-full", "addgene_id": "144742", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144742.addgene-full.gb" }, @@ -66760,7 +84193,6 @@ "plasmid_name": "pHAGE mCherry-Rab11A S20V", "sequence-type": "addgene-full", "addgene_id": "228036", - "references": [], "kit": null, "file": "data/addgene_plasmids/228036.addgene-full.gb" }, @@ -66769,7 +84201,10 @@ "plasmid_name": "pAdCMV/V5-DEST-STAT3-3xFlag", "sequence-type": "addgene-full", "addgene_id": "99260", - "references": [], + "references": [ + "https://doi.org/10.1152/ajpcell.00235.2017", + "https://www.ncbi.nlm.nih.gov/pubmed/29351406" + ], "kit": null, "file": "data/addgene_plasmids/99260.addgene-full.gb" }, @@ -66778,7 +84213,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp13", "sequence-type": "addgene-full", "addgene_id": "168890", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168890.addgene-full.gb" }, @@ -66787,7 +84225,10 @@ "plasmid_name": "p3E-Cltb", "sequence-type": "addgene-full", "addgene_id": "109586", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109586.addgene-full.gb" }, @@ -66796,7 +84237,10 @@ "plasmid_name": "pDONR223_HTR3B_p.W95C", "sequence-type": "addgene-full", "addgene_id": "81696", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -66808,7 +84252,10 @@ "plasmid_name": "pDONR223_TRAT1_WT", "sequence-type": "addgene-full", "addgene_id": "81922", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -66820,7 +84267,10 @@ "plasmid_name": "5'-3xFLAG Mef2a+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212063", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212063.addgene-full.gb" }, @@ -66830,8 +84280,8 @@ "sequence-type": "depositor-full", "addgene_id": "22515", "references": [ - "https://doi.org/10.1038/srep34365", - "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" ], "kit": null, "file": "data/addgene_plasmids/22515.depositor-full.gb" @@ -66841,7 +84291,10 @@ "plasmid_name": "pAG416-Gal-PA50", "sequence-type": "depositor-full", "addgene_id": "84902", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "file": "data/addgene_plasmids/84902.depositor-full.gb" }, @@ -66850,7 +84303,10 @@ "plasmid_name": "MAC3-C-GFP", "sequence-type": "addgene-full", "addgene_id": "222601", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "file": "data/addgene_plasmids/222601.addgene-full.gb" }, @@ -66859,7 +84315,6 @@ "plasmid_name": "R777-E238 Hs.RASAL3-nostop", "sequence-type": "depositor-full", "addgene_id": "70522", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -66871,7 +84326,10 @@ "plasmid_name": "pENTR/D_creERt2", "sequence-type": "addgene-full", "addgene_id": "27321", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.059345", + "https://www.ncbi.nlm.nih.gov/pubmed/21138979" + ], "kit": null, "file": "data/addgene_plasmids/27321.addgene-full.gb" }, @@ -66880,7 +84338,10 @@ "plasmid_name": "pAG416GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14291", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -66892,7 +84353,10 @@ "plasmid_name": "KP401: pMVP (L5-L4) eCFP-P2A", "sequence-type": "addgene-full", "addgene_id": "121712", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121712.addgene-full.gb" }, @@ -66901,7 +84365,6 @@ "plasmid_name": "pBABEpuro-CRAF_S257L", "sequence-type": "depositor-full", "addgene_id": "51125", - "references": [], "kit": null, "file": "data/addgene_plasmids/51125.depositor-full.gb" }, @@ -66910,7 +84373,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-irf2bpl B", "sequence-type": "addgene-full", "addgene_id": "89371", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89371.addgene-full.gb" }, @@ -66919,7 +84385,10 @@ "plasmid_name": "pMMK ENTR 1 HITI-2c ACTB", "sequence-type": "addgene-full", "addgene_id": "206269", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206269.addgene-full.gb" }, @@ -66928,7 +84397,10 @@ "plasmid_name": "pMM2_4", "sequence-type": "addgene-full", "addgene_id": "183057", - "references": [], + "references": [ + "https://doi.org/10.1093/femsyr/foab049", + "https://www.ncbi.nlm.nih.gov/pubmed/34477863" + ], "kit": null, "file": "data/addgene_plasmids/183057.addgene-full.gb" }, @@ -66937,7 +84409,10 @@ "plasmid_name": "AAEL003378 FMRFaR", "sequence-type": "addgene-full", "addgene_id": "115382", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115382.addgene-full.gb" }, @@ -66946,7 +84421,9 @@ "plasmid_name": "pDONR221-SF3B2", "sequence-type": "addgene-full", "addgene_id": "166208", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166208.addgene-full.gb" }, @@ -66955,7 +84432,10 @@ "plasmid_name": "pBGRY", "sequence-type": "depositor-full", "addgene_id": "61599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2014.07.012", + "https://www.ncbi.nlm.nih.gov/pubmed/25123314" + ], "kit": null, "file": "data/addgene_plasmids/61599.depositor-full.gb" }, @@ -66964,7 +84444,10 @@ "plasmid_name": "pHAGE-BRAF-G466E", "sequence-type": "addgene-full", "addgene_id": "116150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116150.addgene-full.gb" }, @@ -66973,7 +84456,10 @@ "plasmid_name": "pDONR223_TNFRSF14_WT", "sequence-type": "addgene-full", "addgene_id": "81850", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -66985,7 +84471,10 @@ "plasmid_name": "pLenti CMV/TO GFP-Zeo DEST (719-1)", "sequence-type": "addgene-full", "addgene_id": "17431", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17431.addgene-full.gb" }, @@ -66994,7 +84483,10 @@ "plasmid_name": "pDONR221-kcnk2a", "sequence-type": "addgene-full", "addgene_id": "208983", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208983.addgene-full.gb" }, @@ -67003,7 +84495,10 @@ "plasmid_name": "pYPQ142-ZmUbi", "sequence-type": "addgene-full", "addgene_id": "138106", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138106.addgene-full.gb" }, @@ -67012,7 +84507,6 @@ "plasmid_name": "pCWXPGR-pTF-Ngn2", "sequence-type": "addgene-full", "addgene_id": "114280", - "references": [], "kit": null, "file": "data/addgene_plasmids/114280.addgene-full.gb" }, @@ -67021,7 +84515,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.P160L", "sequence-type": "addgene-full", "addgene_id": "81404", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -67033,7 +84530,10 @@ "plasmid_name": "KK501: pMVP (L3-L2) FKBP DD + polyA", "sequence-type": "addgene-full", "addgene_id": "121789", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121789.addgene-full.gb" }, @@ -67042,7 +84542,10 @@ "plasmid_name": "pCMB-PERr", "sequence-type": "depositor-full", "addgene_id": "61203", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61203.depositor-full.gb" }, @@ -67051,7 +84554,9 @@ "plasmid_name": "pDONR221-ELAVL2", "sequence-type": "addgene-full", "addgene_id": "166173", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166173.addgene-full.gb" }, @@ -67060,7 +84565,10 @@ "plasmid_name": "TFORF3508", "sequence-type": "addgene-full", "addgene_id": "144984", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144984.addgene-full.gb" }, @@ -67069,7 +84577,10 @@ "plasmid_name": "pDONR223-ZNF346", "sequence-type": "addgene-full", "addgene_id": "88193", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88193.addgene-full.gb" }, @@ -67078,7 +84589,10 @@ "plasmid_name": "TFORF3154", "sequence-type": "addgene-full", "addgene_id": "144630", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144630.addgene-full.gb" }, @@ -67087,7 +84601,10 @@ "plasmid_name": "pUB-Cas9", "sequence-type": "addgene-full", "addgene_id": "86556", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00039", + "https://www.ncbi.nlm.nih.gov/pubmed/28174584" + ], "kit": null, "file": "data/addgene_plasmids/86556.addgene-full.gb" }, @@ -67096,7 +84613,10 @@ "plasmid_name": "p3E-rab4a", "sequence-type": "addgene-full", "addgene_id": "109714", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109714.addgene-full.gb" }, @@ -67105,7 +84625,10 @@ "plasmid_name": "pDEST 565-XERICO", "sequence-type": "addgene-full", "addgene_id": "118675", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118675.addgene-full.gb" }, @@ -67114,7 +84637,10 @@ "plasmid_name": "pDONR223-MCU-E257A", "sequence-type": "depositor-full", "addgene_id": "31727", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "file": "data/addgene_plasmids/31727.depositor-full.gb" }, @@ -67123,7 +84649,10 @@ "plasmid_name": "pDONR221-SLC24A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161215", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161215.addgene-full.gb" }, @@ -67132,7 +84661,10 @@ "plasmid_name": "pDONR223_PIK3CG_p.W212C", "sequence-type": "addgene-full", "addgene_id": "81630", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -67144,7 +84676,10 @@ "plasmid_name": "actc1b-mKate2-Dnm2a-DN", "sequence-type": "addgene-full", "addgene_id": "109520", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109520.addgene-full.gb" }, @@ -67153,7 +84688,10 @@ "plasmid_name": "pHAGE-ERBB4-K606N", "sequence-type": "addgene-full", "addgene_id": "116364", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116364.addgene-full.gb" }, @@ -67162,7 +84700,10 @@ "plasmid_name": "pEN12A-P750", "sequence-type": "depositor-full", "addgene_id": "49525", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "file": "data/addgene_plasmids/49525.depositor-full.gb" }, @@ -67171,7 +84712,10 @@ "plasmid_name": "pDONR221-SLC7A14_STOP", "sequence-type": "depositor-full", "addgene_id": "161339", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161339.depositor-full.gb" }, @@ -67180,7 +84724,10 @@ "plasmid_name": "pDONR223-ZNF484", "sequence-type": "addgene-full", "addgene_id": "88047", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88047.addgene-full.gb" }, @@ -67189,7 +84736,10 @@ "plasmid_name": "TFORF3374", "sequence-type": "addgene-full", "addgene_id": "144850", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144850.addgene-full.gb" }, @@ -67198,7 +84748,10 @@ "plasmid_name": "pDONR221_SLC16A4", "sequence-type": "addgene-full", "addgene_id": "131911", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131911.addgene-full.gb" }, @@ -67207,7 +84760,10 @@ "plasmid_name": "pCM5.47", "sequence-type": "depositor-full", "addgene_id": "17254", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/17254.depositor-full.gb" }, @@ -67216,7 +84772,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12Y", "sequence-type": "addgene-full", "addgene_id": "82799", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82799.addgene-full.gb" }, @@ -67225,7 +84784,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep41", "sequence-type": "addgene-full", "addgene_id": "136843", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136843.addgene-full.gb" }, @@ -67234,7 +84796,10 @@ "plasmid_name": "pDR-AmTrac", "sequence-type": "depositor-full", "addgene_id": "47770", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.00800", + "https://www.ncbi.nlm.nih.gov/pubmed/23840931" + ], "kit": null, "file": "data/addgene_plasmids/47770.depositor-full.gb" }, @@ -67243,7 +84808,10 @@ "plasmid_name": "pBTMcC24-DM", "sequence-type": "addgene-full", "addgene_id": "111236", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4464", + "https://www.ncbi.nlm.nih.gov/pubmed/29039417" + ], "kit": null, "file": "data/addgene_plasmids/111236.addgene-full.gb" }, @@ -67252,7 +84820,10 @@ "plasmid_name": "pLenti-CMV-Blast-DNTGFBR2-HA", "sequence-type": "addgene-full", "addgene_id": "130888", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.07.092", + "https://www.ncbi.nlm.nih.gov/pubmed/31461652" + ], "kit": null, "file": "data/addgene_plasmids/130888.addgene-full.gb" }, @@ -67261,7 +84832,10 @@ "plasmid_name": "pSECB sgMTHFD2L_2", "sequence-type": "addgene-full", "addgene_id": "106307", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106307.addgene-full.gb" }, @@ -67270,7 +84844,6 @@ "plasmid_name": "pGP4G-cccdB", "sequence-type": "depositor-full", "addgene_id": "83876", - "references": [], "kit": null, "file": "data/addgene_plasmids/83876.depositor-full.gb" }, @@ -67279,7 +84852,10 @@ "plasmid_name": "pEN_TT 3xFLAG-XRCC6", "sequence-type": "addgene-full", "addgene_id": "192302", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192302.addgene-full.gb" }, @@ -67288,7 +84864,10 @@ "plasmid_name": "pMSCV-SMYD3", "sequence-type": "addgene-full", "addgene_id": "85650", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13320", + "https://www.ncbi.nlm.nih.gov/pubmed/24847881" + ], "kit": null, "file": "data/addgene_plasmids/85650.addgene-full.gb" }, @@ -67297,7 +84876,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP14_stop", "sequence-type": "addgene-full", "addgene_id": "168719", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168719.addgene-full.gb" }, @@ -67306,7 +84888,10 @@ "plasmid_name": "pMDC32-HPB", "sequence-type": "depositor-full", "addgene_id": "32078", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2008.03736.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19000159" + ], "kit": null, "file": "data/addgene_plasmids/32078.depositor-full.gb" }, @@ -67315,7 +84900,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf3a", "sequence-type": "addgene-full", "addgene_id": "158372", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158372.addgene-full.gb" }, @@ -67324,7 +84912,9 @@ "plasmid_name": "p3E-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82593", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82593.depositor-full.gb" }, @@ -67333,7 +84923,10 @@ "plasmid_name": "A3Bctd-max", "sequence-type": "addgene-full", "addgene_id": "198888", - "references": [], + "references": [ + "https://doi.org/10.1089/crispr.2023.0027", + "https://www.ncbi.nlm.nih.gov/pubmed/37672599" + ], "kit": null, "file": "data/addgene_plasmids/198888.addgene-full.gb" }, @@ -67342,7 +84935,10 @@ "plasmid_name": "GFP-BICD2", "sequence-type": "addgene-full", "addgene_id": "164626", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164626.addgene-full.gb" }, @@ -67351,7 +84947,6 @@ "plasmid_name": "R777-E174 Hs.PIK3R2-nostop", "sequence-type": "depositor-full", "addgene_id": "70458", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -67363,7 +84958,10 @@ "plasmid_name": "C514-E24: attB5r-RU5u-V5-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162959", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -67375,7 +84973,10 @@ "plasmid_name": "Control-cx43.4-48H-pGTag", "sequence-type": "addgene-full", "addgene_id": "117818", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53968", + "https://www.ncbi.nlm.nih.gov/pubmed/32412410" + ], "kit": null, "file": "data/addgene_plasmids/117818.addgene-full.gb" }, @@ -67384,7 +84985,10 @@ "plasmid_name": "pHAGE-PTEN-S170N", "sequence-type": "addgene-full", "addgene_id": "116635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116635.addgene-full.gb" }, @@ -67393,7 +84997,6 @@ "plasmid_name": "pLIX403-EBFP2-ccdB-EYFP", "sequence-type": "addgene-full", "addgene_id": "158558", - "references": [], "kit": null, "file": "data/addgene_plasmids/158558.addgene-full.gb" }, @@ -67402,7 +85005,10 @@ "plasmid_name": "pENTR-L5-EF1_-R3", "sequence-type": "addgene-full", "addgene_id": "141037", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141037.addgene-full.gb" }, @@ -67411,7 +85017,10 @@ "plasmid_name": "pDONR223-PRKCQ", "sequence-type": "addgene-full", "addgene_id": "23424", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -67423,7 +85032,10 @@ "plasmid_name": "pENTR-R4R3-3xmRuby-C", "sequence-type": "addgene-full", "addgene_id": "113757", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -67435,7 +85047,10 @@ "plasmid_name": "MAC3-tag-N", "sequence-type": "addgene-full", "addgene_id": "185482", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/185482.addgene-full.gb" }, @@ -67444,7 +85059,10 @@ "plasmid_name": "pENTR4-V5-LUC (w468-1)", "sequence-type": "depositor-full", "addgene_id": "19135", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/19135.depositor-full.gb" }, @@ -67453,7 +85071,10 @@ "plasmid_name": "MKAKU41ec", "sequence-type": "addgene-full", "addgene_id": "131014", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "file": "data/addgene_plasmids/131014.addgene-full.gb" }, @@ -67462,7 +85083,10 @@ "plasmid_name": "MAC_C_LMTK2", "sequence-type": "addgene-full", "addgene_id": "187752", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187752.addgene-full.gb" }, @@ -67471,7 +85095,10 @@ "plasmid_name": "pCMP-APr", "sequence-type": "depositor-full", "addgene_id": "61184", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61184.depositor-full.gb" }, @@ -67480,7 +85107,10 @@ "plasmid_name": "pDONR223_OR2G6_p.R265K", "sequence-type": "addgene-full", "addgene_id": "81361", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -67492,7 +85122,10 @@ "plasmid_name": "pcDNA5/FRT/TO-Venus-Flag-Gateway (1124)", "sequence-type": "addgene-full", "addgene_id": "40999", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201001083", + "https://www.ncbi.nlm.nih.gov/pubmed/20733051" + ], "kit": null, "file": "data/addgene_plasmids/40999.addgene-full.gb" }, @@ -67501,7 +85134,10 @@ "plasmid_name": "Tol2-LyzC-RacFRET-U6ac-rac2 guides", "sequence-type": "addgene-full", "addgene_id": "168248", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "file": "data/addgene_plasmids/168248.addgene-full.gb" }, @@ -67510,7 +85146,9 @@ "plasmid_name": "pMpGWB117", "sequence-type": "depositor-full", "addgene_id": "68571", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68571.depositor-full.gb" }, @@ -67519,7 +85157,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NI_G1397-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171727", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171727.addgene-full.gb" }, @@ -67528,7 +85169,6 @@ "plasmid_name": "BRAF - R558G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216614", - "references": [], "kit": null, "file": "data/addgene_plasmids/216614.addgene-full.gb" }, @@ -67537,7 +85177,10 @@ "plasmid_name": "pWS1806", "sequence-type": "addgene-full", "addgene_id": "123047", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123047.addgene-full.gb" }, @@ -67546,7 +85189,10 @@ "plasmid_name": "Active Wnt4-V5", "sequence-type": "depositor-full", "addgene_id": "43812", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43812.depositor-full.gb" }, @@ -67555,7 +85201,10 @@ "plasmid_name": "pDONR221_SLC2A2", "sequence-type": "addgene-full", "addgene_id": "132126", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132126.addgene-full.gb" }, @@ -67564,7 +85213,9 @@ "plasmid_name": "pcDNA5-3xFLAG-TAF5-\u2206ex8", "sequence-type": "addgene-full", "addgene_id": "209050", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209050.addgene-full.gb" }, @@ -67573,7 +85224,10 @@ "plasmid_name": "pDONR223_WWTR1_WT", "sequence-type": "addgene-full", "addgene_id": "82253", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82253.addgene-full.gb" }, @@ -67582,7 +85236,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0388-luc2", "sequence-type": "addgene-full", "addgene_id": "214624", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214624.addgene-full.gb" }, @@ -67591,7 +85248,10 @@ "plasmid_name": "pAG305GPD-ccdB-EGFP", "sequence-type": "addgene-full", "addgene_id": "14186", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -67603,7 +85263,10 @@ "plasmid_name": "pSC32", "sequence-type": "addgene-full", "addgene_id": "104806", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104806.addgene-full.gb" }, @@ -67612,7 +85275,10 @@ "plasmid_name": "pMuLE ENTR CMV eGFP R4-R3", "sequence-type": "depositor-full", "addgene_id": "62141", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62141.depositor-full.gb" }, @@ -67621,7 +85287,10 @@ "plasmid_name": "pJB557", "sequence-type": "addgene-full", "addgene_id": "115967", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115967.addgene-full.gb" }, @@ -67630,7 +85299,10 @@ "plasmid_name": "pMx/ATP11C-b(E184Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209264", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258523", + "https://www.ncbi.nlm.nih.gov/pubmed/34528675" + ], "kit": null, "file": "data/addgene_plasmids/209264.addgene-full.gb" }, @@ -67639,7 +85311,6 @@ "plasmid_name": "pENTR-Hygro", "sequence-type": "addgene-full", "addgene_id": "139555", - "references": [], "kit": null, "file": "data/addgene_plasmids/139555.addgene-full.gb" }, @@ -67648,7 +85319,6 @@ "plasmid_name": "pEN_TT luciferase-V5", "sequence-type": "addgene-full", "addgene_id": "220360", - "references": [], "kit": null, "file": "data/addgene_plasmids/220360.addgene-full.gb" }, @@ -67657,7 +85327,6 @@ "plasmid_name": "R777-E132 Hs.MET-nostop", "sequence-type": "depositor-full", "addgene_id": "70416", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -67669,7 +85338,6 @@ "plasmid_name": "p667-UBC-GFP-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135240", - "references": [], "kit": null, "file": "data/addgene_plasmids/135240.addgene-full.gb" }, @@ -67678,7 +85346,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-UD-KD", "sequence-type": "addgene-full", "addgene_id": "140301", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140301.addgene-full.gb" }, @@ -67687,7 +85358,10 @@ "plasmid_name": "cASPG1-mRFP", "sequence-type": "addgene-full", "addgene_id": "181962", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.360", + "https://www.ncbi.nlm.nih.gov/pubmed/34877448" + ], "kit": null, "file": "data/addgene_plasmids/181962.addgene-full.gb" }, @@ -67696,7 +85370,10 @@ "plasmid_name": "pANG02", "sequence-type": "addgene-full", "addgene_id": "178084", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2021.102608", + "https://www.ncbi.nlm.nih.gov/pubmed/34801582" + ], "kit": null, "file": "data/addgene_plasmids/178084.addgene-full.gb" }, @@ -67705,7 +85382,10 @@ "plasmid_name": "768 pME mApple-CAAX", "sequence-type": "addgene-full", "addgene_id": "195961", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195961.addgene-full.gb" }, @@ -67714,7 +85394,10 @@ "plasmid_name": "pDONR223-ZNF785", "sequence-type": "addgene-full", "addgene_id": "88459", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88459.addgene-full.gb" }, @@ -67723,7 +85406,10 @@ "plasmid_name": "PA-RL-mCherry", "sequence-type": "depositor-full", "addgene_id": "78861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "file": "data/addgene_plasmids/78861.depositor-full.gb" }, @@ -67732,7 +85418,6 @@ "plasmid_name": "Hs.KRAS4a Q61L", "sequence-type": "depositor-full", "addgene_id": "83171", - "references": [], "kit": null, "file": "data/addgene_plasmids/83171.depositor-full.gb" }, @@ -67741,7 +85426,10 @@ "plasmid_name": "pDONR221_SLC39A4", "sequence-type": "addgene-full", "addgene_id": "132069", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132069.addgene-full.gb" }, @@ -67750,7 +85438,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-LC3B-G120A-GFP", "sequence-type": "addgene-full", "addgene_id": "123108", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123108.addgene-full.gb" }, @@ -67759,7 +85450,6 @@ "plasmid_name": "pAM-35s-CBL10-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102402", - "references": [], "kit": null, "file": "data/addgene_plasmids/102402.addgene-full.gb" }, @@ -67768,7 +85458,10 @@ "plasmid_name": "pAG303GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14158", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -67780,7 +85473,10 @@ "plasmid_name": "pQLinkHD-SYNZIP4", "sequence-type": "depositor-full", "addgene_id": "80660", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "file": "data/addgene_plasmids/80660.depositor-full.gb" }, @@ -67789,7 +85485,10 @@ "plasmid_name": "pDONR221-ZNF860", "sequence-type": "depositor-full", "addgene_id": "101441", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101441.depositor-full.gb" }, @@ -67798,7 +85497,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aa1.2.3", "sequence-type": "addgene-full", "addgene_id": "136372", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136372.addgene-full.gb" }, @@ -67807,7 +85509,10 @@ "plasmid_name": "pDL190", "sequence-type": "addgene-full", "addgene_id": "175927", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175927.addgene-full.gb" }, @@ -67816,7 +85521,10 @@ "plasmid_name": "pLX317 SLC2A1", "sequence-type": "addgene-full", "addgene_id": "193685", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193685.addgene-full.gb" }, @@ -67825,7 +85533,10 @@ "plasmid_name": "pCM5.46", "sequence-type": "depositor-full", "addgene_id": "19386", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19386.depositor-full.gb" }, @@ -67834,7 +85545,6 @@ "plasmid_name": "IDG_KCNIP1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161690", - "references": [], "kit": null, "file": "data/addgene_plasmids/161690.addgene-full.gb" }, @@ -67843,7 +85553,10 @@ "plasmid_name": "pBullet-cyt-n", "sequence-type": "depositor-full", "addgene_id": "53065", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53065.depositor-full.gb" }, @@ -67852,7 +85565,6 @@ "plasmid_name": "pX458-Ef1a-dCas9-KRAB-MECP2-H2B-GFP (CRISPRi)", "sequence-type": "addgene-full", "addgene_id": "175573", - "references": [], "kit": null, "file": "data/addgene_plasmids/175573.addgene-full.gb" }, @@ -67861,7 +85573,10 @@ "plasmid_name": "pLenti-Lifeact EGFP", "sequence-type": "addgene-full", "addgene_id": "187686", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0069378", + "https://www.ncbi.nlm.nih.gov/pubmed/23990882" + ], "kit": null, "file": "data/addgene_plasmids/187686.addgene-full.gb" }, @@ -67870,7 +85585,10 @@ "plasmid_name": "MAC-TMPRSS11B", "sequence-type": "addgene-full", "addgene_id": "172421", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172421.addgene-full.gb" }, @@ -67879,7 +85597,6 @@ "plasmid_name": "pAG416GAL10-CCHFV_OTU", "sequence-type": "addgene-full", "addgene_id": "201945", - "references": [], "kit": null, "file": "data/addgene_plasmids/201945.addgene-full.gb" }, @@ -67888,7 +85605,10 @@ "plasmid_name": "pHAGE-FLT4-F131S", "sequence-type": "addgene-full", "addgene_id": "116401", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116401.addgene-full.gb" }, @@ -67897,7 +85617,10 @@ "plasmid_name": "pMXs-hu-c-Myc-dN2", "sequence-type": "depositor-full", "addgene_id": "50774", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "file": "data/addgene_plasmids/50774.depositor-full.gb" }, @@ -67906,7 +85629,10 @@ "plasmid_name": "pENTR223-BGLF5", "sequence-type": "addgene-full", "addgene_id": "195813", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195813.addgene-full.gb" }, @@ -67915,7 +85641,6 @@ "plasmid_name": "pEF 4r-GFPGUS-3r", "sequence-type": "depositor-full", "addgene_id": "20098", - "references": [], "kit": null, "file": "data/addgene_plasmids/20098.depositor-full.gb" }, @@ -67924,7 +85649,10 @@ "plasmid_name": "Flag-HA-USP38", "sequence-type": "addgene-full", "addgene_id": "22580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22580.addgene-full.gb" }, @@ -67933,7 +85661,6 @@ "plasmid_name": "pLenti6.2-Firefly-ccdB", "sequence-type": "addgene-full", "addgene_id": "87077", - "references": [], "kit": null, "file": "data/addgene_plasmids/87077.addgene-full.gb" }, @@ -67942,7 +85669,9 @@ "plasmid_name": "pMpGWB403", "sequence-type": "depositor-full", "addgene_id": "68668", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68668.depositor-full.gb" }, @@ -67951,7 +85680,10 @@ "plasmid_name": "C514-E51: attB5r-RBS-His6-MBP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162964", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -67963,7 +85695,9 @@ "plasmid_name": "pLX317-QKI", "sequence-type": "addgene-full", "addgene_id": "115441", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "file": "data/addgene_plasmids/115441.addgene-full.gb" }, @@ -67972,7 +85706,10 @@ "plasmid_name": "pDONR221_SLC4A1", "sequence-type": "addgene-full", "addgene_id": "132180", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132180.addgene-full.gb" }, @@ -67981,7 +85718,10 @@ "plasmid_name": "pENTR221-GLI1", "sequence-type": "addgene-full", "addgene_id": "79497", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79497.addgene-full.gb" }, @@ -67990,7 +85730,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-Zeo", "sequence-type": "addgene-full", "addgene_id": "158565", - "references": [], "kit": null, "file": "data/addgene_plasmids/158565.addgene-full.gb" }, @@ -67999,7 +85738,10 @@ "plasmid_name": "pHAGE-PPP2R1A-P179R", "sequence-type": "addgene-full", "addgene_id": "116608", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116608.addgene-full.gb" }, @@ -68008,7 +85750,10 @@ "plasmid_name": "pDONR221_SLC4A4", "sequence-type": "addgene-full", "addgene_id": "132260", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132260.addgene-full.gb" }, @@ -68017,7 +85762,10 @@ "plasmid_name": "pENTR D-TOPO-C3_15", "sequence-type": "depositor-full", "addgene_id": "60262", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60262.depositor-full.gb" }, @@ -68026,7 +85774,10 @@ "plasmid_name": "p8322 pDONR ATG-YAP1 S94A-Stop", "sequence-type": "addgene-full", "addgene_id": "184526", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184526.addgene-full.gb" }, @@ -68035,7 +85786,10 @@ "plasmid_name": "pDONR223_ERN1_WT", "sequence-type": "addgene-full", "addgene_id": "82115", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82115.addgene-full.gb" }, @@ -68044,7 +85798,10 @@ "plasmid_name": "MAC_N_TLX2", "sequence-type": "addgene-full", "addgene_id": "167806", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167806.addgene-full.gb" }, @@ -68053,7 +85810,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP2", "sequence-type": "addgene-full", "addgene_id": "169377", - "references": [], "kit": null, "file": "data/addgene_plasmids/169377.addgene-full.gb" }, @@ -68062,7 +85818,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TSSK6_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170618", - "references": [], "kit": null, "file": "data/addgene_plasmids/170618.addgene-full.gb" }, @@ -68071,7 +85826,10 @@ "plasmid_name": "pSEM267 - pEXP(mosTI, neoR)[Pmex-5 | ceGFP(PATC, NLS) | tbb-2 3'UTR]", "sequence-type": "addgene-full", "addgene_id": "159833", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "file": "data/addgene_plasmids/159833.addgene-full.gb" }, @@ -68080,7 +85838,10 @@ "plasmid_name": "tetO-ESRRA", "sequence-type": "addgene-full", "addgene_id": "170683", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170683.addgene-full.gb" }, @@ -68089,7 +85850,10 @@ "plasmid_name": "pHAGE-PIK3CD-R785W", "sequence-type": "addgene-full", "addgene_id": "116573", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116573.addgene-full.gb" }, @@ -68098,7 +85862,10 @@ "plasmid_name": "pDONR223_GPR137B_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83017", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83017.addgene-full.gb" }, @@ -68107,7 +85874,10 @@ "plasmid_name": "pENTR-THT", "sequence-type": "depositor-full", "addgene_id": "55790", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "file": "data/addgene_plasmids/55790.depositor-full.gb" }, @@ -68116,7 +85886,10 @@ "plasmid_name": "pEAHISPA0856", "sequence-type": "addgene-full", "addgene_id": "97014", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97014.addgene-full.gb" }, @@ -68125,7 +85898,10 @@ "plasmid_name": "pHAGE-TBC1D3B-R162*", "sequence-type": "addgene-full", "addgene_id": "116693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116693.addgene-full.gb" }, @@ -68134,7 +85910,10 @@ "plasmid_name": "pENTR_L1-Turbo-YFP-NLS-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127361", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127361.addgene-full.gb" }, @@ -68143,7 +85922,10 @@ "plasmid_name": "pDONR221-SLCO4A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161402", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161402.addgene-full.gb" }, @@ -68152,7 +85934,10 @@ "plasmid_name": "pFRT/TO/FLAG/HA-DEST TNRC6A", "sequence-type": "addgene-full", "addgene_id": "19883", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19883.addgene-full.gb" }, @@ -68161,7 +85946,10 @@ "plasmid_name": "pT2-cryR;dll4CE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90146", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90146.addgene-full.gb" }, @@ -68182,7 +85970,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0376-luc2", "sequence-type": "addgene-full", "addgene_id": "214619", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214619.addgene-full.gb" }, @@ -68191,7 +85982,10 @@ "plasmid_name": "pENTR-L1-ESYN-R5", "sequence-type": "depositor-full", "addgene_id": "32581", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32581.depositor-full.gb" }, @@ -68200,7 +85994,10 @@ "plasmid_name": "pDONR223-PTK2", "sequence-type": "addgene-full", "addgene_id": "23902", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -68212,7 +86009,10 @@ "plasmid_name": "p3E-APEX2-P2A-mKate2", "sequence-type": "depositor-full", "addgene_id": "67671", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67671.depositor-full.gb" }, @@ -68221,7 +86021,9 @@ "plasmid_name": "pMpGWB235", "sequence-type": "depositor-full", "addgene_id": "68626", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68626.depositor-full.gb" }, @@ -68230,7 +86032,10 @@ "plasmid_name": "pMx/ATP10B(E210Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209259", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209259.addgene-full.gb" }, @@ -68239,7 +86044,10 @@ "plasmid_name": "pDONR221-PARP11", "sequence-type": "addgene-full", "addgene_id": "184469", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "file": "data/addgene_plasmids/184469.addgene-full.gb" }, @@ -68248,7 +86056,6 @@ "plasmid_name": "pgLAP4", "sequence-type": "depositor-full", "addgene_id": "19705", - "references": [], "kit": null, "file": "data/addgene_plasmids/19705.depositor-full.gb" }, @@ -68257,7 +86064,10 @@ "plasmid_name": "pMuLE ENTR MCS L1-L4", "sequence-type": "addgene-full", "addgene_id": "62087", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62087.addgene-full.gb" }, @@ -68266,7 +86076,6 @@ "plasmid_name": "IDG_ASIC4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161636", - "references": [], "kit": null, "file": "data/addgene_plasmids/161636.addgene-full.gb" }, @@ -68275,7 +86084,10 @@ "plasmid_name": "pYPQ290", "sequence-type": "addgene-full", "addgene_id": "129670", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129670.addgene-full.gb" }, @@ -68284,7 +86096,10 @@ "plasmid_name": "KAT14-pDEST10", "sequence-type": "addgene-full", "addgene_id": "118382", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118382.addgene-full.gb" }, @@ -68293,7 +86108,10 @@ "plasmid_name": "pHAGE-GATA3", "sequence-type": "addgene-full", "addgene_id": "116747", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116747.addgene-full.gb" }, @@ -68302,7 +86120,10 @@ "plasmid_name": "W118-1_hTGM4-Flag", "sequence-type": "addgene-full", "addgene_id": "180409", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180409.addgene-full.gb" }, @@ -68311,7 +86132,6 @@ "plasmid_name": "pDONR221-hmgn6-SE", "sequence-type": "addgene-full", "addgene_id": "192721", - "references": [], "kit": null, "file": "data/addgene_plasmids/192721.addgene-full.gb" }, @@ -68320,7 +86140,10 @@ "plasmid_name": "pPB-cT3G-cERP2-JUN", "sequence-type": "addgene-full", "addgene_id": "192895", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192895.addgene-full.gb" }, @@ -68329,7 +86152,10 @@ "plasmid_name": "pDONR221_SLC25A45", "sequence-type": "addgene-full", "addgene_id": "132054", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132054.addgene-full.gb" }, @@ -68338,7 +86164,10 @@ "plasmid_name": "pDONR223_MAP3K7_WT", "sequence-type": "addgene-full", "addgene_id": "82321", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82321.addgene-full.gb" }, @@ -68347,7 +86176,10 @@ "plasmid_name": "pYZ149", "sequence-type": "addgene-full", "addgene_id": "98407", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.117.300363", + "https://www.ncbi.nlm.nih.gov/pubmed/29321167" + ], "kit": null, "file": "data/addgene_plasmids/98407.addgene-full.gb" }, @@ -68356,7 +86188,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-2", "sequence-type": "depositor-full", "addgene_id": "46711", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46711.depositor-full.gb" }, @@ -68365,7 +86200,10 @@ "plasmid_name": "pDONR223_C19orf48_p.L70F", "sequence-type": "addgene-full", "addgene_id": "81288", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -68377,7 +86215,10 @@ "plasmid_name": "ACA8-YFPc", "sequence-type": "addgene-full", "addgene_id": "87243", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.111.192575", + "https://www.ncbi.nlm.nih.gov/pubmed/22535420" + ], "kit": null, "file": "data/addgene_plasmids/87243.addgene-full.gb" }, @@ -68386,7 +86227,10 @@ "plasmid_name": "pDestattB/CY (pCM327)", "sequence-type": "depositor-full", "addgene_id": "68341", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.23989", + "https://www.ncbi.nlm.nih.gov/pubmed/23723152" + ], "kit": null, "file": "data/addgene_plasmids/68341.depositor-full.gb" }, @@ -68395,7 +86239,10 @@ "plasmid_name": "pREPK219H", "sequence-type": "depositor-full", "addgene_id": "51492", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51492.depositor-full.gb" }, @@ -68404,7 +86251,10 @@ "plasmid_name": "mEos3-Rac1", "sequence-type": "addgene-full", "addgene_id": "92039", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1409667112", + "https://www.ncbi.nlm.nih.gov/pubmed/25561548" + ], "kit": null, "file": "data/addgene_plasmids/92039.addgene-full.gb" }, @@ -68413,7 +86263,10 @@ "plasmid_name": "pHAGE-FGFR3-S131L", "sequence-type": "addgene-full", "addgene_id": "116385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116385.addgene-full.gb" }, @@ -68422,7 +86275,10 @@ "plasmid_name": "pGWB402", "sequence-type": "addgene-full", "addgene_id": "74796", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74796.addgene-full.gb" }, @@ -68431,7 +86287,10 @@ "plasmid_name": "TFORF3229", "sequence-type": "addgene-full", "addgene_id": "144705", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144705.addgene-full.gb" }, @@ -68440,7 +86299,10 @@ "plasmid_name": "actc1b-mKate2-rab32a", "sequence-type": "addgene-full", "addgene_id": "109621", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109621.addgene-full.gb" }, @@ -68449,7 +86311,10 @@ "plasmid_name": "pAG415GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14170", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -68461,7 +86326,10 @@ "plasmid_name": "pDONR223_SV2C_p.G146S", "sequence-type": "addgene-full", "addgene_id": "81531", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -68473,7 +86341,10 @@ "plasmid_name": "pDONR223_KEAP1_p.S102L", "sequence-type": "addgene-full", "addgene_id": "82778", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82778.addgene-full.gb" }, @@ -68482,7 +86353,10 @@ "plasmid_name": "pDONR221-SLC17A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161114", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161114.addgene-full.gb" }, @@ -68491,7 +86365,6 @@ "plasmid_name": "Hs.KRAS4b Y40C", "sequence-type": "depositor-full", "addgene_id": "83159", - "references": [], "kit": null, "file": "data/addgene_plasmids/83159.depositor-full.gb" }, @@ -68500,7 +86373,9 @@ "plasmid_name": "pME V5-mTagBFP2 (JDW 830)", "sequence-type": "addgene-full", "addgene_id": "224484", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224484.addgene-full.gb" }, @@ -68509,7 +86384,9 @@ "plasmid_name": "GGDestX2-Amp", "sequence-type": "addgene-full", "addgene_id": "157654", - "references": [], + "references": [ + "https://doi.org/10.17504/protocols.io.brgcm3sw" + ], "kit": null, "file": "data/addgene_plasmids/157654.addgene-full.gb" }, @@ -68518,7 +86395,6 @@ "plasmid_name": "pAM-35s-Lyk5-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102386", - "references": [], "kit": null, "file": "data/addgene_plasmids/102386.addgene-full.gb" }, @@ -68527,7 +86403,10 @@ "plasmid_name": "pDONR223 HCoV-229E S_stop", "sequence-type": "addgene-full", "addgene_id": "168763", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168763.addgene-full.gb" }, @@ -68536,7 +86415,10 @@ "plasmid_name": "pENTR1A DHFR.dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134726", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "file": "data/addgene_plasmids/134726.addgene-full.gb" }, @@ -68545,7 +86427,10 @@ "plasmid_name": "ELMOD3", "sequence-type": "addgene-full", "addgene_id": "155584", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155584.addgene-full.gb" }, @@ -68554,7 +86439,6 @@ "plasmid_name": "pDONR221-WT-long-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192098", - "references": [], "kit": null, "file": "data/addgene_plasmids/192098.addgene-full.gb" }, @@ -68563,7 +86447,10 @@ "plasmid_name": "pLX317-VRK1-K179E", "sequence-type": "addgene-full", "addgene_id": "199644", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "file": "data/addgene_plasmids/199644.addgene-full.gb" }, @@ -68572,7 +86459,10 @@ "plasmid_name": "pMuLE ENTR CMV Luc2 (FF-Luciferase) R4-R3", "sequence-type": "depositor-full", "addgene_id": "62169", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62169.depositor-full.gb" }, @@ -68581,7 +86471,9 @@ "plasmid_name": "pDRf1-4CL5-DsRed (JBEI-15461)", "sequence-type": "addgene-full", "addgene_id": "87935", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27871334" + ], "kit": null, "file": "data/addgene_plasmids/87935.addgene-full.gb" }, @@ -68590,7 +86482,6 @@ "plasmid_name": "p667-UBC-ADCK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189908", - "references": [], "kit": null, "file": "data/addgene_plasmids/189908.addgene-full.gb" }, @@ -68599,7 +86490,10 @@ "plasmid_name": "pEBTetDBl-CLIP-HsSAS6", "sequence-type": "addgene-full", "addgene_id": "136839", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136839.addgene-full.gb" }, @@ -68608,7 +86502,9 @@ "plasmid_name": "pUB-cHyPer2", "sequence-type": "addgene-full", "addgene_id": "84728", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "file": "data/addgene_plasmids/84728.addgene-full.gb" }, @@ -68617,7 +86513,10 @@ "plasmid_name": "pAG425GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14417", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -68629,7 +86528,10 @@ "plasmid_name": "pStart-K", "sequence-type": "addgene-full", "addgene_id": "20346", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "file": "data/addgene_plasmids/20346.addgene-full.gb" }, @@ -68638,7 +86540,9 @@ "plasmid_name": "pMpGWB105", "sequence-type": "depositor-full", "addgene_id": "68559", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68559.depositor-full.gb" }, @@ -68647,7 +86551,10 @@ "plasmid_name": "pMXs-SOX10", "sequence-type": "addgene-full", "addgene_id": "134669", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199723", + "https://www.ncbi.nlm.nih.gov/pubmed/35748297" + ], "kit": null, "file": "data/addgene_plasmids/134669.addgene-full.gb" }, @@ -68656,7 +86563,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF8_nostop", "sequence-type": "addgene-full", "addgene_id": "149326", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149326.addgene-full.gb" }, @@ -68665,7 +86575,10 @@ "plasmid_name": "Tol2pA2-drl:APEX2-mCherry", "sequence-type": "addgene-full", "addgene_id": "188945", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64835", + "https://www.ncbi.nlm.nih.gov/pubmed/35943143" + ], "kit": null, "file": "data/addgene_plasmids/188945.addgene-full.gb" }, @@ -68674,7 +86587,10 @@ "plasmid_name": "pEN_TT 3XFLAG-wtGATA6-3XAU1", "sequence-type": "addgene-full", "addgene_id": "72612", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "file": "data/addgene_plasmids/72612.addgene-full.gb" }, @@ -68683,7 +86599,10 @@ "plasmid_name": "pPN440", "sequence-type": "addgene-full", "addgene_id": "137874", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "file": "data/addgene_plasmids/137874.addgene-full.gb" }, @@ -68692,7 +86611,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-6", "sequence-type": "depositor-full", "addgene_id": "46693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46693.depositor-full.gb" }, @@ -68701,7 +86623,6 @@ "plasmid_name": "HCP7", "sequence-type": "addgene-full", "addgene_id": "166109", - "references": [], "kit": null, "file": "data/addgene_plasmids/166109.addgene-full.gb" }, @@ -68710,7 +86631,10 @@ "plasmid_name": "pGFP-Rab8A", "sequence-type": "depositor-full", "addgene_id": "24898", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.053", + "https://www.ncbi.nlm.nih.gov/pubmed/17574030" + ], "kit": null, "file": "data/addgene_plasmids/24898.depositor-full.gb" }, @@ -68719,7 +86643,10 @@ "plasmid_name": "pCAG-Autobow", "sequence-type": "depositor-full", "addgene_id": "45182", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2450", + "https://www.ncbi.nlm.nih.gov/pubmed/23817127" + ], "kit": null, "file": "data/addgene_plasmids/45182.depositor-full.gb" }, @@ -68728,7 +86655,10 @@ "plasmid_name": "pMuLE (L1-L4) 6X PRE", "sequence-type": "addgene-full", "addgene_id": "206168", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "file": "data/addgene_plasmids/206168.addgene-full.gb" }, @@ -68737,7 +86667,10 @@ "plasmid_name": "JC201: pMVP/Ad/5-35-DEST", "sequence-type": "addgene-full", "addgene_id": "121847", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121847.addgene-full.gb" }, @@ -68746,7 +86679,10 @@ "plasmid_name": "pDONR223_HLA-DRA_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82983", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82983.addgene-full.gb" }, @@ -68755,7 +86691,10 @@ "plasmid_name": "KZ101: pMVP (L3-L2) P2A-eCFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121768", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121768.addgene-full.gb" }, @@ -68764,7 +86703,10 @@ "plasmid_name": "pDONR223_FCGR3B_p.K179T", "sequence-type": "addgene-full", "addgene_id": "82918", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82918.addgene-full.gb" }, @@ -68773,7 +86715,9 @@ "plasmid_name": "pDONR221-NONO", "sequence-type": "addgene-full", "addgene_id": "166192", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166192.addgene-full.gb" }, @@ -68782,7 +86726,10 @@ "plasmid_name": "pBABEpuro-ARAF_S214C", "sequence-type": "depositor-full", "addgene_id": "51077", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI72763", + "https://www.ncbi.nlm.nih.gov/pubmed/24569458" + ], "kit": null, "file": "data/addgene_plasmids/51077.depositor-full.gb" }, @@ -68791,7 +86738,10 @@ "plasmid_name": "TFORF3489", "sequence-type": "addgene-full", "addgene_id": "144965", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144965.addgene-full.gb" }, @@ -68800,7 +86750,10 @@ "plasmid_name": "pMuLE ENTR U6 stuffer sgRNA scaffold L1-R5", "sequence-type": "depositor-full", "addgene_id": "62127", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62127.depositor-full.gb" }, @@ -68809,7 +86762,10 @@ "plasmid_name": "pSAM2_mCherry_Nkx2.5", "sequence-type": "addgene-full", "addgene_id": "72689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72689.addgene-full.gb" }, @@ -68818,7 +86774,10 @@ "plasmid_name": "p8208 MSCV-Neo C-HA EMPTY", "sequence-type": "addgene-full", "addgene_id": "163310", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "file": "data/addgene_plasmids/163310.addgene-full.gb" }, @@ -68827,7 +86786,6 @@ "plasmid_name": "R777-E186 Hs.PLXNB1-nostop", "sequence-type": "depositor-full", "addgene_id": "70470", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -68839,7 +86797,10 @@ "plasmid_name": "pAM88", "sequence-type": "addgene-full", "addgene_id": "226680", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226680.addgene-full.gb" }, @@ -68848,7 +86809,10 @@ "plasmid_name": "pEN_TTmiRC2_3xflag_NRF2(RR)", "sequence-type": "addgene-full", "addgene_id": "136522", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136522.addgene-full.gb" }, @@ -68857,7 +86821,10 @@ "plasmid_name": "pDONR221-SLC41A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161320", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161320.addgene-full.gb" }, @@ -68866,7 +86833,10 @@ "plasmid_name": "Tet-myr-CSK-GFP", "sequence-type": "depositor-full", "addgene_id": "83470", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201501025", + "https://www.ncbi.nlm.nih.gov/pubmed/26216901" + ], "kit": null, "file": "data/addgene_plasmids/83470.depositor-full.gb" }, @@ -68875,7 +86845,10 @@ "plasmid_name": "pDONR223_ERBB2_p.T182I", "sequence-type": "addgene-full", "addgene_id": "81705", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -68887,7 +86860,10 @@ "plasmid_name": "JDW 837 (pCS2-V5-mScarlet-I-hsKRAS4A-G12V)", "sequence-type": "addgene-full", "addgene_id": "156410", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156410.addgene-full.gb" }, @@ -68896,7 +86872,10 @@ "plasmid_name": "TFORF3262", "sequence-type": "addgene-full", "addgene_id": "144738", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144738.addgene-full.gb" }, @@ -68905,7 +86884,10 @@ "plasmid_name": "pTALdNC-AAVS1_T1", "sequence-type": "addgene-full", "addgene_id": "80495", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.12.012", + "https://www.ncbi.nlm.nih.gov/pubmed/26707206" + ], "kit": null, "file": "data/addgene_plasmids/80495.addgene-full.gb" }, @@ -68914,7 +86896,10 @@ "plasmid_name": "pDONR221-SLC22A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161129", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161129.addgene-full.gb" }, @@ -68923,7 +86908,10 @@ "plasmid_name": "pUPRT::DHFR-D", "sequence-type": "depositor-full", "addgene_id": "58528", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01114-14", + "https://www.ncbi.nlm.nih.gov/pubmed/24825012" + ], "kit": null, "file": "data/addgene_plasmids/58528.depositor-full.gb" }, @@ -68932,7 +86920,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND F405G", "sequence-type": "addgene-full", "addgene_id": "169973", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169973.addgene-full.gb" }, @@ -68941,7 +86932,10 @@ "plasmid_name": "pDONR223-ZNF540", "sequence-type": "addgene-full", "addgene_id": "87993", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/87993.addgene-full.gb" }, @@ -68950,7 +86944,10 @@ "plasmid_name": "YAF2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98383", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98383.addgene-full.gb" }, @@ -68959,7 +86956,10 @@ "plasmid_name": "pDONR-SUMO1", "sequence-type": "addgene-full", "addgene_id": "114388", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-017-18168-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29269788" + ], "kit": null, "file": "data/addgene_plasmids/114388.addgene-full.gb" }, @@ -68968,7 +86968,6 @@ "plasmid_name": "p5E-mitfa2.1", "sequence-type": "depositor-full", "addgene_id": "81234", - "references": [], "kit": null, "file": "data/addgene_plasmids/81234.depositor-full.gb" }, @@ -68977,7 +86976,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF6", "sequence-type": "addgene-full", "addgene_id": "154420", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154420.addgene-full.gb" }, @@ -68986,7 +86988,10 @@ "plasmid_name": "pDONR223_RBM10_WT", "sequence-type": "addgene-full", "addgene_id": "81958", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81958.addgene-full.gb" }, @@ -68995,7 +87000,10 @@ "plasmid_name": "p3E-EGFP", "sequence-type": "addgene-full", "addgene_id": "140877", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/140877.addgene-full.gb" }, @@ -69004,7 +87012,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L3L2", "sequence-type": "depositor-full", "addgene_id": "113740", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -69016,7 +87027,10 @@ "plasmid_name": "pDONR221-SLC25A41_STOP", "sequence-type": "depositor-full", "addgene_id": "161172", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161172.depositor-full.gb" }, @@ -69025,7 +87039,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-mir-40", "sequence-type": "depositor-full", "addgene_id": "46739", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46739.depositor-full.gb" }, @@ -69034,7 +87051,10 @@ "plasmid_name": "pAG423GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14269", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -69046,7 +87066,10 @@ "plasmid_name": "pT3-EF1aH-TAZ S89A", "sequence-type": "addgene-full", "addgene_id": "179910", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jhep.2021.08.021", + "https://www.ncbi.nlm.nih.gov/pubmed/34464659" + ], "kit": null, "file": "data/addgene_plasmids/179910.addgene-full.gb" }, @@ -69055,7 +87078,10 @@ "plasmid_name": "35S-GAL4BD-GWY/pAM", "sequence-type": "addgene-full", "addgene_id": "201233", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16234", + "https://www.ncbi.nlm.nih.gov/pubmed/37323061" + ], "kit": null, "file": "data/addgene_plasmids/201233.addgene-full.gb" }, @@ -69064,7 +87090,10 @@ "plasmid_name": "p3E-EHD1b-dEH", "sequence-type": "addgene-full", "addgene_id": "109567", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109567.addgene-full.gb" }, @@ -69073,7 +87102,10 @@ "plasmid_name": "TFORF2967", "sequence-type": "addgene-full", "addgene_id": "144443", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144443.addgene-full.gb" }, @@ -69082,7 +87114,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.I35S", "sequence-type": "addgene-full", "addgene_id": "81677", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -69094,7 +87129,10 @@ "plasmid_name": "pENTR221-H1-sgGFP1-7SK-sgCas9", "sequence-type": "addgene-full", "addgene_id": "87908", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87908.addgene-full.gb" }, @@ -69103,7 +87141,10 @@ "plasmid_name": "5'-3xFLAG Chtop-exon_siResist minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212082", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212082.addgene-full.gb" }, @@ -69112,7 +87153,10 @@ "plasmid_name": "pDONR221-SLC35E2A_STOP", "sequence-type": "addgene-full", "addgene_id": "161252", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161252.addgene-full.gb" }, @@ -69121,7 +87165,6 @@ "plasmid_name": "pSCM167-Venus-VF-hADAM10(aa455-654)", "sequence-type": "addgene-full", "addgene_id": "189561", - "references": [], "kit": null, "file": "data/addgene_plasmids/189561.addgene-full.gb" }, @@ -69130,7 +87173,10 @@ "plasmid_name": "pDONR223_DNMT3A_p.Q485H", "sequence-type": "addgene-full", "addgene_id": "81597", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -69142,7 +87188,10 @@ "plasmid_name": "pCAGGS-4511NES", "sequence-type": "addgene-full", "addgene_id": "138375", - "references": [], + "references": [ + "https://doi.org/10.1021/acssensors.9b01941", + "https://www.ncbi.nlm.nih.gov/pubmed/32101394" + ], "kit": null, "file": "data/addgene_plasmids/138375.addgene-full.gb" }, @@ -69151,7 +87200,10 @@ "plasmid_name": "pEBTet-SNAP-Cep290", "sequence-type": "addgene-full", "addgene_id": "136804", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136804.addgene-full.gb" }, @@ -69160,7 +87212,6 @@ "plasmid_name": "pLenti6.3/NS2B", "sequence-type": "addgene-full", "addgene_id": "120837", - "references": [], "kit": null, "file": "data/addgene_plasmids/120837.addgene-full.gb" }, @@ -69169,7 +87220,10 @@ "plasmid_name": "p5E-smyhc1", "sequence-type": "addgene-full", "addgene_id": "126748", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/126748.addgene-full.gb" }, @@ -69178,7 +87232,10 @@ "plasmid_name": "p3E-rab2a", "sequence-type": "addgene-full", "addgene_id": "109687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109687.addgene-full.gb" }, @@ -69187,7 +87244,10 @@ "plasmid_name": "pDONR221_SLC12A6", "sequence-type": "addgene-full", "addgene_id": "131956", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131956.addgene-full.gb" }, @@ -69196,7 +87256,10 @@ "plasmid_name": "pHAGE-EPHA3-R750L", "sequence-type": "addgene-full", "addgene_id": "116323", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116323.addgene-full.gb" }, @@ -69205,7 +87268,10 @@ "plasmid_name": "TFORF3341", "sequence-type": "addgene-full", "addgene_id": "144817", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144817.addgene-full.gb" }, @@ -69214,7 +87280,10 @@ "plasmid_name": "pDONR223_DCAF4L2_WT", "sequence-type": "addgene-full", "addgene_id": "81817", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -69226,7 +87295,10 @@ "plasmid_name": "pDONR221-SLC6A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161386", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161386.addgene-full.gb" }, @@ -69235,7 +87307,6 @@ "plasmid_name": "pDONR223 LC3Flux (HaloTag7-mGFP-LC3-STOP)", "sequence-type": "addgene-full", "addgene_id": "215004", - "references": [], "kit": null, "file": "data/addgene_plasmids/215004.addgene-full.gb" }, @@ -69244,7 +87315,10 @@ "plasmid_name": "pMOS013: mito-roGFP2-Grx1 glutathione redox sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163056", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163056.addgene-full.gb" }, @@ -69253,7 +87327,10 @@ "plasmid_name": "p3E-Rab19", "sequence-type": "addgene-full", "addgene_id": "109753", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109753.addgene-full.gb" }, @@ -69262,7 +87339,6 @@ "plasmid_name": "pFRT-TODestRFP_RNAseH1", "sequence-type": "addgene-full", "addgene_id": "65785", - "references": [], "kit": null, "file": "data/addgene_plasmids/65785.addgene-full.gb" }, @@ -69271,7 +87347,10 @@ "plasmid_name": "TFORF3201", "sequence-type": "addgene-full", "addgene_id": "144677", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144677.addgene-full.gb" }, @@ -69280,7 +87359,10 @@ "plasmid_name": "pDONR221_MFSD8", "sequence-type": "addgene-full", "addgene_id": "131882", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131882.addgene-full.gb" }, @@ -69289,7 +87371,10 @@ "plasmid_name": "plenti-UBC-HA-gate-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107396", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107396.addgene-full.gb" }, @@ -69298,7 +87383,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_K100A", "sequence-type": "depositor-full", "addgene_id": "65663", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65663.depositor-full.gb" }, @@ -69307,7 +87395,10 @@ "plasmid_name": "pBSWt1-Dest", "sequence-type": "depositor-full", "addgene_id": "59764", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.24153", + "https://www.ncbi.nlm.nih.gov/pubmed/24924516" + ], "kit": null, "file": "data/addgene_plasmids/59764.depositor-full.gb" }, @@ -69316,7 +87407,10 @@ "plasmid_name": "pDONR221-SLC17A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161066", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161066.addgene-full.gb" }, @@ -69325,7 +87419,10 @@ "plasmid_name": "TFORF3514", "sequence-type": "depositor-full", "addgene_id": "144990", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144990.depositor-full.gb" }, @@ -69334,7 +87431,10 @@ "plasmid_name": "pDONR223_IDH2_p.A416V", "sequence-type": "addgene-full", "addgene_id": "81443", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -69346,7 +87446,10 @@ "plasmid_name": "pDEST17-hTRPT1-iso1", "sequence-type": "addgene-full", "addgene_id": "184239", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac711", + "https://www.ncbi.nlm.nih.gov/pubmed/36018800" + ], "kit": null, "file": "data/addgene_plasmids/184239.addgene-full.gb" }, @@ -69355,7 +87458,10 @@ "plasmid_name": "pDEST-FRT/TO-3xFLAG-REV7", "sequence-type": "addgene-full", "addgene_id": "114127", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "file": "data/addgene_plasmids/114127.addgene-full.gb" }, @@ -69364,7 +87470,10 @@ "plasmid_name": "pLX-hPGK_NKX2-1", "sequence-type": "addgene-full", "addgene_id": "221494", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221494.addgene-full.gb" }, @@ -69373,7 +87482,10 @@ "plasmid_name": "pDONR223_MAPK7_WT", "sequence-type": "addgene-full", "addgene_id": "82925", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82925.addgene-full.gb" }, @@ -69382,7 +87494,6 @@ "plasmid_name": "R777-E310 Hs.SHC2-nostop", "sequence-type": "depositor-full", "addgene_id": "70594", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -69394,7 +87505,10 @@ "plasmid_name": "pAG426GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14227", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -69406,7 +87520,10 @@ "plasmid_name": "KG802: pMVP (L3-L2) V5 epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121755", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121755.addgene-full.gb" }, @@ -69415,7 +87532,10 @@ "plasmid_name": "Hygro-iNGN3", "sequence-type": "depositor-full", "addgene_id": "75340", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2016.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/27133796" + ], "kit": null, "file": "data/addgene_plasmids/75340.depositor-full.gb" }, @@ -69424,7 +87544,10 @@ "plasmid_name": "pINDgw Cbx1 V5 EcoDam", "sequence-type": "depositor-full", "addgene_id": "59203", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "file": "data/addgene_plasmids/59203.depositor-full.gb" }, @@ -69433,7 +87556,10 @@ "plasmid_name": "TFORF3482", "sequence-type": "addgene-full", "addgene_id": "144958", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144958.addgene-full.gb" }, @@ -69442,7 +87568,10 @@ "plasmid_name": "pBi2FC-N-MPK5-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216136", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216136.addgene-full.gb" }, @@ -69451,7 +87580,10 @@ "plasmid_name": "pFRT/TO/FLAG/HA-DEST TNRC6B", "sequence-type": "depositor-full", "addgene_id": "19884", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19884.depositor-full.gb" }, @@ -69460,7 +87592,10 @@ "plasmid_name": "pLEX307-Bat-CoV-HKU9-3CL", "sequence-type": "addgene-full", "addgene_id": "160284", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160284.addgene-full.gb" }, @@ -69469,7 +87604,10 @@ "plasmid_name": "pDONR223_ACVR1B_WT", "sequence-type": "addgene-full", "addgene_id": "81738", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -69481,7 +87619,10 @@ "plasmid_name": "pInducer20-iCreb5(HA)", "sequence-type": "addgene-full", "addgene_id": "195023", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "file": "data/addgene_plasmids/195023.addgene-full.gb" }, @@ -69490,7 +87631,10 @@ "plasmid_name": "A1-LCD-4D", "sequence-type": "addgene-full", "addgene_id": "178672", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178672.addgene-full.gb" }, @@ -69499,7 +87643,10 @@ "plasmid_name": "p{Mhc-F4-678-DsRed::KD-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182189", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182189.addgene-full.gb" }, @@ -69508,7 +87655,10 @@ "plasmid_name": "A1-LCD WT", "sequence-type": "addgene-full", "addgene_id": "169713", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "file": "data/addgene_plasmids/169713.addgene-full.gb" }, @@ -69517,7 +87667,9 @@ "plasmid_name": "pMpGWB135", "sequence-type": "depositor-full", "addgene_id": "68589", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68589.depositor-full.gb" }, @@ -69526,7 +87678,9 @@ "plasmid_name": "pENTR CMVie-Lifeact-iRFP670 L1-R5", "sequence-type": "addgene-full", "addgene_id": "84390", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "file": "data/addgene_plasmids/84390.addgene-full.gb" }, @@ -69535,7 +87689,10 @@ "plasmid_name": "pCellFree_G03 CYP3A4", "sequence-type": "addgene-full", "addgene_id": "67104", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "file": "data/addgene_plasmids/67104.addgene-full.gb" }, @@ -69544,7 +87701,10 @@ "plasmid_name": "R989-X32-566: His6-MBP-tev-G-Hs.KRAS4b(1-188) Q61R", "sequence-type": "addgene-full", "addgene_id": "159552", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159552.addgene-full.gb" }, @@ -69553,7 +87713,10 @@ "plasmid_name": "p8203 MSCV-neo C-V5 16E7", "sequence-type": "addgene-full", "addgene_id": "193976", - "references": [], + "references": [ + "https://doi.org/10.1128/jvi.01326-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36342298" + ], "kit": null, "file": "data/addgene_plasmids/193976.addgene-full.gb" }, @@ -69562,7 +87725,10 @@ "plasmid_name": "pHAGE-CDK6__HEPACAM2", "sequence-type": "addgene-full", "addgene_id": "116812", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116812.addgene-full.gb" }, @@ -69571,7 +87737,10 @@ "plasmid_name": "pCPP5588", "sequence-type": "addgene-full", "addgene_id": "128708", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128708.addgene-full.gb" }, @@ -69580,7 +87749,10 @@ "plasmid_name": "pHAGE-OXA1L-P58S", "sequence-type": "addgene-full", "addgene_id": "116446", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116446.addgene-full.gb" }, @@ -69589,7 +87761,6 @@ "plasmid_name": "pFRT-TODestFLAGHA_HuD", "sequence-type": "depositor-full", "addgene_id": "65757", - "references": [], "kit": null, "file": "data/addgene_plasmids/65757.depositor-full.gb" }, @@ -69598,7 +87769,10 @@ "plasmid_name": "pDONR221 NLRP1 FIIND (F1079M-L1373)", "sequence-type": "addgene-full", "addgene_id": "166831", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166831.addgene-full.gb" }, @@ -69607,7 +87781,6 @@ "plasmid_name": "p663-UBC-MTS-TurboID-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214457", - "references": [], "kit": null, "file": "data/addgene_plasmids/214457.addgene-full.gb" }, @@ -69616,7 +87789,10 @@ "plasmid_name": "pDONR223_HIST1H1E_p.A60D", "sequence-type": "addgene-full", "addgene_id": "81269", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -69628,7 +87804,10 @@ "plasmid_name": "pRU292", "sequence-type": "addgene-full", "addgene_id": "167687", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167687.addgene-full.gb" }, @@ -69637,7 +87816,10 @@ "plasmid_name": "pENTR1A-NTAP-A (w322-1)", "sequence-type": "depositor-full", "addgene_id": "17402", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17402.depositor-full.gb" }, @@ -69646,7 +87828,10 @@ "plasmid_name": "pME turquoise2", "sequence-type": "addgene-full", "addgene_id": "135207", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13967", + "https://www.ncbi.nlm.nih.gov/pubmed/25470057" + ], "kit": null, "file": "data/addgene_plasmids/135207.addgene-full.gb" }, @@ -69655,7 +87840,10 @@ "plasmid_name": "pLG166", "sequence-type": "addgene-full", "addgene_id": "124366", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-019-0412-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31792444" + ], "kit": null, "file": "data/addgene_plasmids/124366.addgene-full.gb" }, @@ -69664,7 +87852,10 @@ "plasmid_name": "pZmUBQ:Mla1", "sequence-type": "addgene-full", "addgene_id": "132355", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0502-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31666804" + ], "kit": null, "file": "data/addgene_plasmids/132355.addgene-full.gb" }, @@ -69673,7 +87864,6 @@ "plasmid_name": "CROP-seq-opti-dsRed", "sequence-type": "addgene-full", "addgene_id": "201999", - "references": [], "kit": null, "file": "data/addgene_plasmids/201999.addgene-full.gb" }, @@ -69682,7 +87872,10 @@ "plasmid_name": "pCM1.151", "sequence-type": "depositor-full", "addgene_id": "21386", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21386.depositor-full.gb" }, @@ -69691,7 +87884,10 @@ "plasmid_name": "pLX311-Cas9", "sequence-type": "addgene-full", "addgene_id": "118018", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-018-0204-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30224644" + ], "kit": null, "file": "data/addgene_plasmids/118018.addgene-full.gb" }, @@ -69700,7 +87896,10 @@ "plasmid_name": "pcDNA3/HF-CDC50A", "sequence-type": "addgene-full", "addgene_id": "209223", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209223.addgene-full.gb" }, @@ -69709,7 +87908,10 @@ "plasmid_name": "pDEST-Tol2-PA2-CMV-AB-mCh", "sequence-type": "addgene-full", "addgene_id": "160435", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.3856", + "https://www.ncbi.nlm.nih.gov/pubmed/33659494" + ], "kit": null, "file": "data/addgene_plasmids/160435.addgene-full.gb" }, @@ -69718,7 +87920,10 @@ "plasmid_name": "WPXL SOX10 gRNA", "sequence-type": "addgene-full", "addgene_id": "101923", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-017-0002-y", + "https://www.ncbi.nlm.nih.gov/pubmed/29203910" + ], "kit": null, "file": "data/addgene_plasmids/101923.addgene-full.gb" }, @@ -69727,7 +87932,10 @@ "plasmid_name": "pEZYflag", "sequence-type": "addgene-full", "addgene_id": "18700", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18700.addgene-full.gb" }, @@ -69736,7 +87944,6 @@ "plasmid_name": "pLEX307-ACE2-G418", "sequence-type": "addgene-full", "addgene_id": "158450", - "references": [], "kit": null, "file": "data/addgene_plasmids/158450.addgene-full.gb" }, @@ -69745,7 +87952,10 @@ "plasmid_name": "pDONR221_SV2B", "sequence-type": "addgene-full", "addgene_id": "132281", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132281.addgene-full.gb" }, @@ -69754,7 +87964,10 @@ "plasmid_name": "pHAGE-PIK3CA-M1004I", "sequence-type": "addgene-full", "addgene_id": "116509", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116509.addgene-full.gb" }, @@ -69763,7 +87976,10 @@ "plasmid_name": "pWZL Neo Myr Flag NTRK3", "sequence-type": "addgene-full", "addgene_id": "20551", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20551.addgene-full.gb" }, @@ -69772,7 +87988,10 @@ "plasmid_name": "MAC_N_ETV4", "sequence-type": "addgene-full", "addgene_id": "167753", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167753.addgene-full.gb" }, @@ -69781,7 +88000,6 @@ "plasmid_name": "Hs.HRAS C186S", "sequence-type": "depositor-full", "addgene_id": "83189", - "references": [], "kit": null, "file": "data/addgene_plasmids/83189.depositor-full.gb" }, @@ -69790,7 +88008,10 @@ "plasmid_name": "pCFJ2440 - [1-2] ENTR - Fluor - ce-GFP(PATCs(900bp), no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159849", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159849.addgene-full.gb" }, @@ -69799,7 +88020,10 @@ "plasmid_name": "CYYR1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176986", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176986.addgene-full.gb" }, @@ -69808,7 +88032,6 @@ "plasmid_name": "R777-E329 Hs.SPRY2", "sequence-type": "depositor-full", "addgene_id": "70613", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -69820,7 +88043,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF9b", "sequence-type": "addgene-full", "addgene_id": "169396", - "references": [], "kit": null, "file": "data/addgene_plasmids/169396.addgene-full.gb" }, @@ -69829,7 +88051,10 @@ "plasmid_name": "10xHis-TEV-ATG5_ATG7_ATG10_ATG12_ATG16L1-TEV-StrepII (Human autophagy E3-like enzyme)", "sequence-type": "addgene-full", "addgene_id": "169076", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201912098", + "https://www.ncbi.nlm.nih.gov/pubmed/32437499" + ], "kit": null, "file": "data/addgene_plasmids/169076.addgene-full.gb" }, @@ -69838,7 +88063,10 @@ "plasmid_name": "pLenti PGK mKate2-OGT K842M (Puro)", "sequence-type": "addgene-full", "addgene_id": "154291", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154291.addgene-full.gb" }, @@ -69847,7 +88075,10 @@ "plasmid_name": "pXL-BacII-CAG-mCherry", "sequence-type": "addgene-full", "addgene_id": "170519", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.4105", + "https://www.ncbi.nlm.nih.gov/pubmed/34458399" + ], "kit": null, "file": "data/addgene_plasmids/170519.addgene-full.gb" }, @@ -69856,7 +88087,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0538-luc2", "sequence-type": "addgene-full", "addgene_id": "214663", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214663.addgene-full.gb" }, @@ -69865,7 +88099,10 @@ "plasmid_name": "pDONR223_IRS1_WT", "sequence-type": "addgene-full", "addgene_id": "82214", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82214.addgene-full.gb" }, @@ -69874,7 +88111,9 @@ "plasmid_name": "Shim_MetRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202650", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "file": "data/addgene_plasmids/202650.addgene-full.gb" }, @@ -69883,7 +88122,10 @@ "plasmid_name": "pDONR221_SLC7A13", "sequence-type": "addgene-full", "addgene_id": "132161", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132161.addgene-full.gb" }, @@ -69892,7 +88134,10 @@ "plasmid_name": "pAAV-TRE3G-tdTomato", "sequence-type": "addgene-full", "addgene_id": "194644", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-022-01223-1", + "https://www.ncbi.nlm.nih.gov/pubmed/36564546" + ], "kit": null, "file": "data/addgene_plasmids/194644.addgene-full.gb" }, @@ -69901,7 +88146,10 @@ "plasmid_name": "pHAGE-RHOA-E40Q", "sequence-type": "addgene-full", "addgene_id": "116672", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116672.addgene-full.gb" }, @@ -69910,7 +88158,10 @@ "plasmid_name": "pDONR223-ZNF175", "sequence-type": "addgene-full", "addgene_id": "88551", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88551.addgene-full.gb" }, @@ -69919,7 +88170,10 @@ "plasmid_name": "pGC188", "sequence-type": "depositor-full", "addgene_id": "19619", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19619.depositor-full.gb" }, @@ -69928,7 +88182,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MARK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170582", - "references": [], "kit": null, "file": "data/addgene_plasmids/170582.addgene-full.gb" }, @@ -69937,7 +88190,10 @@ "plasmid_name": "pDONR221_SLC1A1", "sequence-type": "depositor-full", "addgene_id": "131878", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131878.depositor-full.gb" }, @@ -69946,7 +88202,10 @@ "plasmid_name": "pGWB502-omega", "sequence-type": "depositor-full", "addgene_id": "74845", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74845.depositor-full.gb" }, @@ -69955,7 +88214,10 @@ "plasmid_name": "pSGE_720_S2-1_CGCG-to-ETS21C", "sequence-type": "depositor-full", "addgene_id": "71176", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71176.depositor-full.gb" }, @@ -69964,7 +88226,10 @@ "plasmid_name": "pDONR223_CCNG1_p.E167K", "sequence-type": "addgene-full", "addgene_id": "81326", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -69976,7 +88241,10 @@ "plasmid_name": "pENTR L1-20XUAS-L4", "sequence-type": "depositor-full", "addgene_id": "32307", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32307.depositor-full.gb" }, @@ -69985,7 +88253,6 @@ "plasmid_name": "IDG_KCNMB3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161703", - "references": [], "kit": null, "file": "data/addgene_plasmids/161703.addgene-full.gb" }, @@ -69994,7 +88261,10 @@ "plasmid_name": "pHAGE-PIK3R1-G376R", "sequence-type": "addgene-full", "addgene_id": "116592", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116592.addgene-full.gb" }, @@ -70003,7 +88273,6 @@ "plasmid_name": "R777-E090 Hs.FGFR4-nostop", "sequence-type": "depositor-full", "addgene_id": "70374", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -70015,7 +88284,10 @@ "plasmid_name": "pEntry Tshld(FKBP F36V)-GFP", "sequence-type": "depositor-full", "addgene_id": "53260", - "references": [], + "references": [ + "https://doi.org/10.1002/cbic.201400006", + "https://www.ncbi.nlm.nih.gov/pubmed/24615791" + ], "kit": null, "file": "data/addgene_plasmids/53260.depositor-full.gb" }, @@ -70024,7 +88296,10 @@ "plasmid_name": "pCK029 exorh:EGFP", "sequence-type": "addgene-full", "addgene_id": "195980", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195980.addgene-full.gb" }, @@ -70033,7 +88308,10 @@ "plasmid_name": "pDONR221_SLC23A1", "sequence-type": "addgene-full", "addgene_id": "132013", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132013.addgene-full.gb" }, @@ -70042,7 +88320,10 @@ "plasmid_name": "pENTR221-TAZ CA", "sequence-type": "addgene-full", "addgene_id": "79504", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79504.addgene-full.gb" }, @@ -70051,7 +88332,10 @@ "plasmid_name": "pCPP6534", "sequence-type": "addgene-full", "addgene_id": "128735", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.04.037", + "https://www.ncbi.nlm.nih.gov/pubmed/29742421" + ], "kit": null, "file": "data/addgene_plasmids/128735.addgene-full.gb" }, @@ -70060,7 +88344,10 @@ "plasmid_name": "pCFJ601 - Peft-3 Mos1 transposase", "sequence-type": "addgene-full", "addgene_id": "34874", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34874.addgene-full.gb" }, @@ -70069,7 +88356,10 @@ "plasmid_name": "pg-HIF-1alpha-EGFP", "sequence-type": "addgene-full", "addgene_id": "87204", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M113.500405", + "https://www.ncbi.nlm.nih.gov/pubmed/24394419" + ], "kit": null, "file": "data/addgene_plasmids/87204.addgene-full.gb" }, @@ -70078,7 +88368,10 @@ "plasmid_name": "pDONR221 Rsa4", "sequence-type": "depositor-full", "addgene_id": "63776", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63776.depositor-full.gb" }, @@ -70087,7 +88380,10 @@ "plasmid_name": "PB-CT3G-CERP2-MG-IRES2-mTagBFP2", "sequence-type": "addgene-full", "addgene_id": "175509", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175509.addgene-full.gb" }, @@ -70096,7 +88392,10 @@ "plasmid_name": "pSGE_770_sn-EcR_dCP", "sequence-type": "depositor-full", "addgene_id": "71221", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71221.depositor-full.gb" }, @@ -70105,7 +88404,10 @@ "plasmid_name": "pDONR223_STAT3_p.Y705F", "sequence-type": "addgene-full", "addgene_id": "82086", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -70117,7 +88419,10 @@ "plasmid_name": "3xFLAG-FKBP-LRRK2", "sequence-type": "addgene-full", "addgene_id": "193584", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2205492119", + "https://www.ncbi.nlm.nih.gov/pubmed/36256825" + ], "kit": null, "file": "data/addgene_plasmids/193584.addgene-full.gb" }, @@ -70126,7 +88431,6 @@ "plasmid_name": "R777-E260 Hs.RASSF4-nostop", "sequence-type": "depositor-full", "addgene_id": "70544", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -70138,7 +88442,6 @@ "plasmid_name": "IDG_PKD1L2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161671", - "references": [], "kit": null, "file": "data/addgene_plasmids/161671.addgene-full.gb" }, @@ -70147,7 +88450,9 @@ "plasmid_name": "pMpGWB425", "sequence-type": "depositor-full", "addgene_id": "68690", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68690.depositor-full.gb" }, @@ -70156,7 +88461,10 @@ "plasmid_name": "pGGEV_2_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49297", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -70168,7 +88476,10 @@ "plasmid_name": "pDONR223 GABARAP no-stop", "sequence-type": "addgene-full", "addgene_id": "123209", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123209.addgene-full.gb" }, @@ -70177,7 +88488,10 @@ "plasmid_name": "pDONR223-AXL", "sequence-type": "addgene-full", "addgene_id": "23945", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -70189,7 +88503,10 @@ "plasmid_name": "pHAGE-TGFBR2-I218V", "sequence-type": "addgene-full", "addgene_id": "116700", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116700.addgene-full.gb" }, @@ -70198,7 +88515,10 @@ "plasmid_name": "pME-Lifeact-mEos2-NS", "sequence-type": "addgene-full", "addgene_id": "115549", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/115549.addgene-full.gb" }, @@ -70207,7 +88527,10 @@ "plasmid_name": "pDONR221_SLC34A2", "sequence-type": "addgene-full", "addgene_id": "132088", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132088.addgene-full.gb" }, @@ -70216,7 +88539,10 @@ "plasmid_name": "pLX311-GFP-MEKDD", "sequence-type": "addgene-full", "addgene_id": "194882", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02898-w", + "https://www.ncbi.nlm.nih.gov/pubmed/36991492" + ], "kit": null, "file": "data/addgene_plasmids/194882.addgene-full.gb" }, @@ -70225,7 +88551,10 @@ "plasmid_name": "pYPQ159", "sequence-type": "depositor-full", "addgene_id": "69308", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69308.depositor-full.gb" }, @@ -70234,7 +88563,10 @@ "plasmid_name": "pJH53_pE12_hyCal2", "sequence-type": "addgene-full", "addgene_id": "160408", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160408.addgene-full.gb" }, @@ -70243,7 +88575,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term SMN2", "sequence-type": "addgene-full", "addgene_id": "187587", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187587.addgene-full.gb" }, @@ -70252,7 +88587,10 @@ "plasmid_name": "pYPQ266", "sequence-type": "addgene-full", "addgene_id": "164713", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164713.addgene-full.gb" }, @@ -70261,7 +88599,10 @@ "plasmid_name": "pDEST-DHFR F[3]-C (LEU2)", "sequence-type": "addgene-full", "addgene_id": "177796", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac045", + "https://www.ncbi.nlm.nih.gov/pubmed/35137167" + ], "kit": null, "file": "data/addgene_plasmids/177796.addgene-full.gb" }, @@ -70270,7 +88611,10 @@ "plasmid_name": "pHAGE-PIK3CA-R115L", "sequence-type": "addgene-full", "addgene_id": "116534", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116534.addgene-full.gb" }, @@ -70279,7 +88623,10 @@ "plasmid_name": "pDONR223-NTRK1", "sequence-type": "addgene-full", "addgene_id": "23891", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -70291,7 +88638,10 @@ "plasmid_name": "pCFJ2089 - [1-2] ENTR - Tag - SNAP(PATC, no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159874", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159874.addgene-full.gb" }, @@ -70300,7 +88650,10 @@ "plasmid_name": "pDONR223_HERPUD2_p.R285Q", "sequence-type": "addgene-full", "addgene_id": "81380", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -70312,7 +88665,9 @@ "plasmid_name": "pNR-DEST", "sequence-type": "addgene-full", "addgene_id": "90101", - "references": [], + "references": [ + "https://doi.org/10.7287/peerj.preprints.2907v1" + ], "kit": null, "file": "data/addgene_plasmids/90101.addgene-full.gb" }, @@ -70321,7 +88676,10 @@ "plasmid_name": "pDONR201-Eps8L2_544-715", "sequence-type": "addgene-full", "addgene_id": "196532", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196532.addgene-full.gb" }, @@ -70330,7 +88688,10 @@ "plasmid_name": "pDONR223_MAPK8_WT", "sequence-type": "addgene-full", "addgene_id": "82229", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82229.addgene-full.gb" }, @@ -70339,7 +88700,10 @@ "plasmid_name": "pDONR221-NIPAL2_STOP", "sequence-type": "addgene-full", "addgene_id": "161445", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161445.addgene-full.gb" }, @@ -70348,7 +88712,10 @@ "plasmid_name": "pEAHISSIRV131", "sequence-type": "addgene-full", "addgene_id": "97053", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97053.addgene-full.gb" }, @@ -70357,7 +88724,10 @@ "plasmid_name": "pLenti PA-mCit-GW", "sequence-type": "addgene-full", "addgene_id": "113456", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113456.addgene-full.gb" }, @@ -70366,7 +88736,10 @@ "plasmid_name": "pPB-cT3G-cERP2-WT1", "sequence-type": "addgene-full", "addgene_id": "192906", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192906.addgene-full.gb" }, @@ -70375,7 +88748,10 @@ "plasmid_name": "AAEL011475 CRZ R", "sequence-type": "addgene-full", "addgene_id": "115406", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115406.addgene-full.gb" }, @@ -70384,7 +88760,10 @@ "plasmid_name": "pTO_Snf7_LAP", "sequence-type": "addgene-full", "addgene_id": "101851", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3559", + "https://www.ncbi.nlm.nih.gov/pubmed/28604678" + ], "kit": null, "file": "data/addgene_plasmids/101851.addgene-full.gb" }, @@ -70393,7 +88772,10 @@ "plasmid_name": "pENTR-L1-CAMKII(0.4)-L4", "sequence-type": "depositor-full", "addgene_id": "32579", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32579.depositor-full.gb" }, @@ -70414,7 +88796,10 @@ "plasmid_name": "C413-E26: attB4-SV40p>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162923", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -70426,7 +88811,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 55-376)", "sequence-type": "addgene-full", "addgene_id": "119313", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119313.addgene-full.gb" }, @@ -70435,7 +88823,10 @@ "plasmid_name": "pDL3", "sequence-type": "addgene-full", "addgene_id": "175889", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175889.addgene-full.gb" }, @@ -70444,7 +88835,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS4A", "sequence-type": "addgene-full", "addgene_id": "145356", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145356.addgene-full.gb" }, @@ -70453,7 +88847,10 @@ "plasmid_name": "pKH118_keima-YIPF4", "sequence-type": "addgene-full", "addgene_id": "214971", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "file": "data/addgene_plasmids/214971.addgene-full.gb" }, @@ -70462,7 +88859,10 @@ "plasmid_name": "pTORKm43GWR", "sequence-type": "addgene-full", "addgene_id": "112900", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01516-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31575765" + ], "kit": null, "file": "data/addgene_plasmids/112900.addgene-full.gb" }, @@ -70471,7 +88871,6 @@ "plasmid_name": "pDONR221-K40R-short-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "195400", - "references": [], "kit": null, "file": "data/addgene_plasmids/195400.addgene-full.gb" }, @@ -70480,7 +88879,10 @@ "plasmid_name": "pDONR223_PER1_WT", "sequence-type": "addgene-full", "addgene_id": "82152", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82152.addgene-full.gb" }, @@ -70489,7 +88891,6 @@ "plasmid_name": "R777-E006 Hs.AKT3-nostop", "sequence-type": "depositor-full", "addgene_id": "70290", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -70501,7 +88902,10 @@ "plasmid_name": "pBABEpuro-ERBB2", "sequence-type": "addgene-full", "addgene_id": "40978", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1203201109", + "https://www.ncbi.nlm.nih.gov/pubmed/22908275" + ], "kit": null, "file": "data/addgene_plasmids/40978.addgene-full.gb" }, @@ -70510,7 +88914,10 @@ "plasmid_name": "pUBQ10-HALO-GW", "sequence-type": "addgene-full", "addgene_id": "209351", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209351.addgene-full.gb" }, @@ -70519,7 +88926,10 @@ "plasmid_name": "p667-UBC-ZNF746-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207820", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207820.addgene-full.gb" }, @@ -70528,7 +88938,10 @@ "plasmid_name": "pDONR221_SLC47A1", "sequence-type": "addgene-full", "addgene_id": "132227", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132227.addgene-full.gb" }, @@ -70537,7 +88950,6 @@ "plasmid_name": "pENTR221 LRRK2 wt", "sequence-type": "depositor-full", "addgene_id": "39529", - "references": [], "kit": null, "file": "data/addgene_plasmids/39529.depositor-full.gb" }, @@ -70546,7 +88958,10 @@ "plasmid_name": "C232-E30: attB2r-mRuby3-attB3", "sequence-type": "addgene-full", "addgene_id": "162907", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -70558,7 +88973,10 @@ "plasmid_name": "pDONR223_CDK2_WT", "sequence-type": "addgene-full", "addgene_id": "82296", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82296.addgene-full.gb" }, @@ -70567,7 +88985,10 @@ "plasmid_name": "EHD2-mCherry", "sequence-type": "depositor-full", "addgene_id": "45933", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2012.98", + "https://www.ncbi.nlm.nih.gov/pubmed/22505029" + ], "kit": null, "file": "data/addgene_plasmids/45933.depositor-full.gb" }, @@ -70576,7 +88997,10 @@ "plasmid_name": "pDONR223 GABARAP G116", "sequence-type": "addgene-full", "addgene_id": "123082", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123082.addgene-full.gb" }, @@ -70585,7 +89009,10 @@ "plasmid_name": "pPB-cT3G-cERP2-ZFPM2", "sequence-type": "addgene-full", "addgene_id": "192922", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192922.addgene-full.gb" }, @@ -70594,7 +89021,10 @@ "plasmid_name": "pMXs-gw", "sequence-type": "addgene-full", "addgene_id": "18656", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.07.024", + "https://www.ncbi.nlm.nih.gov/pubmed/16904174" + ], "kit": null, "file": "data/addgene_plasmids/18656.addgene-full.gb" }, @@ -70603,7 +89033,9 @@ "plasmid_name": "pMpGWB204", "sequence-type": "depositor-full", "addgene_id": "68595", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68595.depositor-full.gb" }, @@ -70612,7 +89044,10 @@ "plasmid_name": "pDONR221_SLC46A2", "sequence-type": "addgene-full", "addgene_id": "132203", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132203.addgene-full.gb" }, @@ -70621,7 +89056,10 @@ "plasmid_name": "Flag-HA-USP42", "sequence-type": "addgene-full", "addgene_id": "22603", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22603.addgene-full.gb" }, @@ -70630,7 +89068,6 @@ "plasmid_name": "R777-E357 Hs.VAV1", "sequence-type": "depositor-full", "addgene_id": "70641", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -70642,7 +89079,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.S33A_S37A_T41A_T45A", "sequence-type": "addgene-full", "addgene_id": "82176", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82176.addgene-full.gb" }, @@ -70651,7 +89091,10 @@ "plasmid_name": "pPB-R1R2_EF1adCas9VP64_T2A_MS2p65HSF1-IRESbsdpA", "sequence-type": "addgene-full", "addgene_id": "112924", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-018-1581-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30477585" + ], "kit": null, "file": "data/addgene_plasmids/112924.addgene-full.gb" }, @@ -70660,7 +89103,10 @@ "plasmid_name": "pCFJ2334 - [1-2] ENTR - Fluor - ce-GFP(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159850", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159850.addgene-full.gb" }, @@ -70669,7 +89115,10 @@ "plasmid_name": "MAC_C_EPHB2", "sequence-type": "addgene-full", "addgene_id": "187797", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187797.addgene-full.gb" }, @@ -70678,7 +89127,10 @@ "plasmid_name": "pRATIO3267", "sequence-type": "addgene-full", "addgene_id": "141312", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141312.addgene-full.gb" }, @@ -70687,7 +89139,10 @@ "plasmid_name": "pDONR221_UNC93B1", "sequence-type": "addgene-full", "addgene_id": "132298", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132298.addgene-full.gb" }, @@ -70696,7 +89151,6 @@ "plasmid_name": "R777-E042 Hs.DUSP5-nostop", "sequence-type": "depositor-full", "addgene_id": "70326", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -70708,7 +89162,10 @@ "plasmid_name": "pHAGE-PIK3CA-M1043I", "sequence-type": "addgene-full", "addgene_id": "116510", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116510.addgene-full.gb" }, @@ -70717,7 +89174,10 @@ "plasmid_name": "pDONR221_SLC43A1", "sequence-type": "addgene-full", "addgene_id": "132178", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132178.addgene-full.gb" }, @@ -70726,7 +89186,10 @@ "plasmid_name": "PRPF4-1", "sequence-type": "addgene-full", "addgene_id": "156158", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156158.addgene-full.gb" }, @@ -70735,7 +89198,9 @@ "plasmid_name": "Shim_AsnRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202649", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "file": "data/addgene_plasmids/202649.addgene-full.gb" }, @@ -70744,7 +89209,10 @@ "plasmid_name": "pBp-FGFR3c-WT", "sequence-type": "addgene-full", "addgene_id": "45711", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-12-3950", + "https://www.ncbi.nlm.nih.gov/pubmed/23786770" + ], "kit": null, "file": "data/addgene_plasmids/45711.addgene-full.gb" }, @@ -70753,7 +89221,10 @@ "plasmid_name": "pMEdll4P1gfp", "sequence-type": "addgene-full", "addgene_id": "90125", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90125.addgene-full.gb" }, @@ -70763,8 +89234,8 @@ "sequence-type": "addgene-full", "addgene_id": "22578", "references": [ - "https://doi.org/10.1038/nn.4085", - "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" ], "kit": null, "file": "data/addgene_plasmids/22578.addgene-full.gb" @@ -70774,7 +89245,10 @@ "plasmid_name": "pDONR221-NPC1_STOP", "sequence-type": "addgene-full", "addgene_id": "161461", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161461.addgene-full.gb" }, @@ -70783,7 +89257,10 @@ "plasmid_name": "pGWB423", "sequence-type": "depositor-full", "addgene_id": "74817", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74817.depositor-full.gb" }, @@ -70792,7 +89269,10 @@ "plasmid_name": "LIIalpha F 1-2", "sequence-type": "depositor-full", "addgene_id": "54346", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54346.depositor-full.gb" }, @@ -70801,7 +89281,10 @@ "plasmid_name": "pTW096", "sequence-type": "addgene-full", "addgene_id": "115939", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115939.addgene-full.gb" }, @@ -70810,7 +89293,6 @@ "plasmid_name": "IDG_PLLP_OE_1", "sequence-type": "addgene-full", "addgene_id": "161655", - "references": [], "kit": null, "file": "data/addgene_plasmids/161655.addgene-full.gb" }, @@ -70819,7 +89301,10 @@ "plasmid_name": "pDONR223_KLRC2_p.G174R", "sequence-type": "addgene-full", "addgene_id": "81270", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -70831,7 +89316,10 @@ "plasmid_name": "pEN-L1-K2-L2", "sequence-type": "depositor-full", "addgene_id": "80684", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms12202", + "https://www.ncbi.nlm.nih.gov/pubmed/27447739" + ], "kit": null, "file": "data/addgene_plasmids/80684.depositor-full.gb" }, @@ -70840,7 +89328,10 @@ "plasmid_name": "MAC_C_SFXN1", "sequence-type": "addgene-full", "addgene_id": "111676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111676.addgene-full.gb" }, @@ -70849,7 +89340,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MAST3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198007", - "references": [], "kit": null, "file": "data/addgene_plasmids/198007.addgene-full.gb" }, @@ -70858,7 +89348,10 @@ "plasmid_name": "pHAGE-CDK4", "sequence-type": "addgene-full", "addgene_id": "116724", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116724.addgene-full.gb" }, @@ -70867,7 +89360,6 @@ "plasmid_name": "pLEX307-ACE2-blast", "sequence-type": "addgene-full", "addgene_id": "158449", - "references": [], "kit": null, "file": "data/addgene_plasmids/158449.addgene-full.gb" }, @@ -70876,7 +89368,10 @@ "plasmid_name": "MX2_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53942", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53942.addgene-full.gb" }, @@ -70885,7 +89380,10 @@ "plasmid_name": "MSCV-N LMP1", "sequence-type": "addgene-full", "addgene_id": "37962", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "file": "data/addgene_plasmids/37962.addgene-full.gb" }, @@ -70894,7 +89392,10 @@ "plasmid_name": "pCPP5238", "sequence-type": "addgene-full", "addgene_id": "128711", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128711.addgene-full.gb" }, @@ -70903,7 +89404,10 @@ "plasmid_name": "pDONR221_SLC23A3", "sequence-type": "addgene-full", "addgene_id": "132037", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132037.addgene-full.gb" }, @@ -70912,7 +89416,6 @@ "plasmid_name": "pDONR221-brwd1", "sequence-type": "addgene-full", "addgene_id": "192742", - "references": [], "kit": null, "file": "data/addgene_plasmids/192742.addgene-full.gb" }, @@ -70921,7 +89424,6 @@ "plasmid_name": "R777-E084 Hs.FGFR1-nostop", "sequence-type": "depositor-full", "addgene_id": "70368", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -70933,7 +89435,9 @@ "plasmid_name": "pENTR CMVie-Lifeact-mRuby2 L1-R5", "sequence-type": "addgene-full", "addgene_id": "84389", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30263951" + ], "kit": null, "file": "data/addgene_plasmids/84389.addgene-full.gb" }, @@ -70942,7 +89446,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP3 Cys857Ala", "sequence-type": "addgene-full", "addgene_id": "154027", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154027.addgene-full.gb" }, @@ -70951,7 +89458,10 @@ "plasmid_name": "pME_GGWDest+", "sequence-type": "depositor-full", "addgene_id": "49321", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -70963,7 +89473,10 @@ "plasmid_name": "PB-TAG-ERP2", "sequence-type": "depositor-full", "addgene_id": "80479", - "references": [], + "references": [ + "https://doi.org/10.1007/7651_2015_251", + "https://www.ncbi.nlm.nih.gov/pubmed/26025620" + ], "kit": null, "file": "data/addgene_plasmids/80479.depositor-full.gb" }, @@ -70972,7 +89485,10 @@ "plasmid_name": "pDONR221 Ub-NLRP1 L1215", "sequence-type": "addgene-full", "addgene_id": "166828", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166828.addgene-full.gb" }, @@ -70981,7 +89497,10 @@ "plasmid_name": "pGWB517", "sequence-type": "depositor-full", "addgene_id": "74859", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74859.depositor-full.gb" }, @@ -70990,7 +89509,10 @@ "plasmid_name": "pAG423GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14341", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -71002,7 +89524,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag3_nostop", "sequence-type": "addgene-full", "addgene_id": "153175", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153175.addgene-full.gb" }, @@ -71011,7 +89536,6 @@ "plasmid_name": "pCM3.11", "sequence-type": "depositor-full", "addgene_id": "19605", - "references": [], "kit": null, "file": "data/addgene_plasmids/19605.depositor-full.gb" }, @@ -71020,7 +89544,10 @@ "plasmid_name": "pDL7", "sequence-type": "addgene-full", "addgene_id": "175890", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175890.addgene-full.gb" }, @@ -71029,7 +89556,10 @@ "plasmid_name": "pUC-DEST-R1R4", "sequence-type": "addgene-full", "addgene_id": "141054", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141054.addgene-full.gb" }, @@ -71038,7 +89568,10 @@ "plasmid_name": "pTO_CHMP2B_LAP", "sequence-type": "addgene-full", "addgene_id": "101848", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3559", + "https://www.ncbi.nlm.nih.gov/pubmed/28604678" + ], "kit": null, "file": "data/addgene_plasmids/101848.addgene-full.gb" }, @@ -71047,7 +89580,10 @@ "plasmid_name": "pHAGE-RAF1-N161K", "sequence-type": "addgene-full", "addgene_id": "116656", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116656.addgene-full.gb" }, @@ -71056,7 +89592,6 @@ "plasmid_name": "p3E_he1a:ECFP", "sequence-type": "addgene-full", "addgene_id": "113880", - "references": [], "kit": null, "file": "data/addgene_plasmids/113880.addgene-full.gb" }, @@ -71065,7 +89600,10 @@ "plasmid_name": "pDest-894 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161893", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -71077,7 +89615,10 @@ "plasmid_name": "pDONR223_HRAS_p.Q61L", "sequence-type": "addgene-full", "addgene_id": "81302", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -71089,7 +89630,10 @@ "plasmid_name": "IFNGR2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176939", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176939.addgene-full.gb" }, @@ -71098,7 +89642,6 @@ "plasmid_name": "pAG416GALL-SARS-CoV-2_3CL", "sequence-type": "addgene-full", "addgene_id": "203496", - "references": [], "kit": null, "file": "data/addgene_plasmids/203496.addgene-full.gb" }, @@ -71107,7 +89650,10 @@ "plasmid_name": "pDONR223_TP53_p.C275F", "sequence-type": "addgene-full", "addgene_id": "81399", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -71119,7 +89665,6 @@ "plasmid_name": "pENTR223 TMPRSS2, closed", "sequence-type": "addgene-full", "addgene_id": "149721", - "references": [], "kit": null, "file": "data/addgene_plasmids/149721.addgene-full.gb" }, @@ -71128,7 +89673,10 @@ "plasmid_name": "pLX302 MX1-V5 puro", "sequence-type": "addgene-full", "addgene_id": "158640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158640.addgene-full.gb" }, @@ -71137,7 +89685,10 @@ "plasmid_name": "pCellFree_G07", "sequence-type": "depositor-full", "addgene_id": "67141", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "file": "data/addgene_plasmids/67141.depositor-full.gb" }, @@ -71146,7 +89697,10 @@ "plasmid_name": "pMH-HA", "sequence-type": "addgene-full", "addgene_id": "101767", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "file": "data/addgene_plasmids/101767.addgene-full.gb" }, @@ -71155,7 +89709,10 @@ "plasmid_name": "pDONR221_SLC35E4", "sequence-type": "addgene-full", "addgene_id": "132145", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132145.addgene-full.gb" }, @@ -71164,7 +89721,6 @@ "plasmid_name": "R777-E274 Hs.RCE1-nostop", "sequence-type": "depositor-full", "addgene_id": "70558", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -71176,7 +89732,10 @@ "plasmid_name": "pWS060", "sequence-type": "addgene-full", "addgene_id": "123024", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123024.addgene-full.gb" }, @@ -71185,7 +89744,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(WT)-IRES-Neo", "sequence-type": "addgene-full", "addgene_id": "128663", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128663.addgene-full.gb" }, @@ -71194,7 +89756,6 @@ "plasmid_name": "MECP2 - G195S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216597", - "references": [], "kit": null, "file": "data/addgene_plasmids/216597.addgene-full.gb" }, @@ -71203,7 +89764,10 @@ "plasmid_name": "Flag-HA-EIF3S3", "sequence-type": "addgene-full", "addgene_id": "22545", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22545.addgene-full.gb" }, @@ -71212,7 +89776,10 @@ "plasmid_name": "pDONR223_MAPK9_WT", "sequence-type": "addgene-full", "addgene_id": "82230", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82230.addgene-full.gb" }, @@ -71221,7 +89788,10 @@ "plasmid_name": "pGL4_EGR1p-BC0131-luc2", "sequence-type": "addgene-full", "addgene_id": "214647", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214647.addgene-full.gb" }, @@ -71230,7 +89800,10 @@ "plasmid_name": "p5Elmo2E1", "sequence-type": "addgene-full", "addgene_id": "90118", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90118.addgene-full.gb" }, @@ -71239,7 +89812,10 @@ "plasmid_name": "pDNA2.0-6H-TEV-KRAS G12D", "sequence-type": "addgene-full", "addgene_id": "159439", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-18-1220", + "https://www.ncbi.nlm.nih.gov/pubmed/30952657" + ], "kit": null, "file": "data/addgene_plasmids/159439.addgene-full.gb" }, @@ -71248,7 +89824,10 @@ "plasmid_name": "pDONR223 GABARAPL1 no-stop", "sequence-type": "addgene-full", "addgene_id": "123210", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123210.addgene-full.gb" }, @@ -71257,7 +89836,6 @@ "plasmid_name": "pSMPUW_7.1_M2_hcSyn-gateway-V5", "sequence-type": "addgene-full", "addgene_id": "128457", - "references": [], "kit": null, "file": "data/addgene_plasmids/128457.addgene-full.gb" }, @@ -71266,7 +89844,10 @@ "plasmid_name": "pME-QFGal4-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155118", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155118.addgene-full.gb" }, @@ -71275,7 +89856,10 @@ "plasmid_name": "pENTR Bmi1-C", "sequence-type": "depositor-full", "addgene_id": "30511", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2011.144", + "https://www.ncbi.nlm.nih.gov/pubmed/21552206" + ], "kit": null, "file": "data/addgene_plasmids/30511.depositor-full.gb" }, @@ -71284,7 +89868,6 @@ "plasmid_name": "pDest-Tol2 (Chien)-Tol2-Isl2b:GFP:polyA", "sequence-type": "addgene-full", "addgene_id": "105648", - "references": [], "kit": null, "file": "data/addgene_plasmids/105648.addgene-full.gb" }, @@ -71293,7 +89876,10 @@ "plasmid_name": "BirA*-HA-NES", "sequence-type": "addgene-full", "addgene_id": "214473", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E23-06-0255", + "https://www.ncbi.nlm.nih.gov/pubmed/38117590" + ], "kit": null, "file": "data/addgene_plasmids/214473.addgene-full.gb" }, @@ -71302,7 +89888,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp9", "sequence-type": "depositor-full", "addgene_id": "168851", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168851.depositor-full.gb" }, @@ -71311,7 +89900,10 @@ "plasmid_name": "p2R3a-3AT", "sequence-type": "depositor-full", "addgene_id": "71273", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71273.depositor-full.gb" }, @@ -71320,7 +89912,6 @@ "plasmid_name": "IDG_KCNIP4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161668", - "references": [], "kit": null, "file": "data/addgene_plasmids/161668.addgene-full.gb" }, @@ -71329,7 +89920,10 @@ "plasmid_name": "p414GPD-3xFLAG-RBM28 L351P", "sequence-type": "addgene-full", "addgene_id": "169266", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2017777118", + "https://www.ncbi.nlm.nih.gov/pubmed/33941690" + ], "kit": null, "file": "data/addgene_plasmids/169266.addgene-full.gb" }, @@ -71338,7 +89932,10 @@ "plasmid_name": "FLS2-YFPc", "sequence-type": "addgene-full", "addgene_id": "87166", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.111.192575", + "https://www.ncbi.nlm.nih.gov/pubmed/22535420" + ], "kit": null, "file": "data/addgene_plasmids/87166.addgene-full.gb" }, @@ -71347,7 +89944,10 @@ "plasmid_name": "pDN0606 (pDEST-DHFR F[3] N-term,HygR)", "sequence-type": "addgene-full", "addgene_id": "210488", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210488.addgene-full.gb" }, @@ -71356,7 +89956,10 @@ "plasmid_name": "pJH198_pE12_hyCal2-eGFP", "sequence-type": "addgene-full", "addgene_id": "160411", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160411.addgene-full.gb" }, @@ -71365,7 +89968,6 @@ "plasmid_name": "pLEX307-TMPRSS4-G418", "sequence-type": "addgene-full", "addgene_id": "158474", - "references": [], "kit": null, "file": "data/addgene_plasmids/158474.addgene-full.gb" }, @@ -71374,7 +89976,10 @@ "plasmid_name": "pAcBac1-Ma-Acridone-RS1 (A7)", "sequence-type": "addgene-full", "addgene_id": "197566", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.2c00639", + "https://www.ncbi.nlm.nih.gov/pubmed/36383641" + ], "kit": null, "file": "data/addgene_plasmids/197566.addgene-full.gb" }, @@ -71383,7 +89988,10 @@ "plasmid_name": "pHAGE-BRAF", "sequence-type": "addgene-full", "addgene_id": "116719", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116719.addgene-full.gb" }, @@ -71392,7 +90000,10 @@ "plasmid_name": "p3E-APEX2 (GC rich)", "sequence-type": "addgene-full", "addgene_id": "115550", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/115550.addgene-full.gb" }, @@ -71401,7 +90012,10 @@ "plasmid_name": "pDONR221_SLC2A10", "sequence-type": "addgene-full", "addgene_id": "132091", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132091.addgene-full.gb" }, @@ -71410,7 +90024,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::RfA", "sequence-type": "addgene-full", "addgene_id": "186407", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186407.addgene-full.gb" }, @@ -71419,7 +90036,10 @@ "plasmid_name": "pHAGE-RBPMS__NTRK3", "sequence-type": "addgene-full", "addgene_id": "116836", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116836.addgene-full.gb" }, @@ -71428,7 +90048,10 @@ "plasmid_name": "pDONR221-FOXQ1", "sequence-type": "addgene-full", "addgene_id": "101628", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101628.addgene-full.gb" }, @@ -71437,7 +90060,10 @@ "plasmid_name": "pLEX307 ASC", "sequence-type": "addgene-full", "addgene_id": "163977", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-20320-y", + "https://www.ncbi.nlm.nih.gov/pubmed/33420033" + ], "kit": null, "file": "data/addgene_plasmids/163977.addgene-full.gb" }, @@ -71446,7 +90072,10 @@ "plasmid_name": "pHAGE-PTPN11", "sequence-type": "addgene-full", "addgene_id": "116782", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116782.addgene-full.gb" }, @@ -71455,7 +90084,10 @@ "plasmid_name": "R702-X38-635: His6-Hs.NF1opt (1-2839) isoform 1", "sequence-type": "addgene-full", "addgene_id": "159576", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA119.010934", + "https://www.ncbi.nlm.nih.gov/pubmed/31836666" + ], "kit": null, "file": "data/addgene_plasmids/159576.addgene-full.gb" }, @@ -71464,7 +90096,10 @@ "plasmid_name": "R726-M01-892: His6-Halotag-tev-Hs.RAF1(52-131)", "sequence-type": "addgene-full", "addgene_id": "159696", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.005669", + "https://www.ncbi.nlm.nih.gov/pubmed/30559287" + ], "kit": null, "file": "data/addgene_plasmids/159696.addgene-full.gb" }, @@ -71473,7 +90108,6 @@ "plasmid_name": "R777-E232 Hs.RASA3-nostop", "sequence-type": "depositor-full", "addgene_id": "70516", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -71485,7 +90119,10 @@ "plasmid_name": "pDEST-SHmOCR", "sequence-type": "addgene-full", "addgene_id": "206874", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkae635", + "https://www.ncbi.nlm.nih.gov/pubmed/39036966" + ], "kit": null, "file": "data/addgene_plasmids/206874.addgene-full.gb" }, @@ -71494,7 +90131,10 @@ "plasmid_name": "hsp70:mKate2-NWASP-CA", "sequence-type": "addgene-full", "addgene_id": "105967", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105967.addgene-full.gb" }, @@ -71503,7 +90143,9 @@ "plasmid_name": "p5E-acta2", "sequence-type": "depositor-full", "addgene_id": "78686", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24594685" + ], "kit": null, "file": "data/addgene_plasmids/78686.depositor-full.gb" }, @@ -71512,7 +90154,10 @@ "plasmid_name": "pHAGE-TEX264\u0394LIR-GFP", "sequence-type": "addgene-full", "addgene_id": "201926", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "file": "data/addgene_plasmids/201926.addgene-full.gb" }, @@ -71521,7 +90166,10 @@ "plasmid_name": "pHAGE-PIK3CA-D350N", "sequence-type": "addgene-full", "addgene_id": "116462", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116462.addgene-full.gb" }, @@ -71530,7 +90178,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP6", "sequence-type": "addgene-full", "addgene_id": "141260", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141260.addgene-full.gb" }, @@ -71539,7 +90190,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) PHLDB1", "sequence-type": "addgene-full", "addgene_id": "107503", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107503.addgene-full.gb" }, @@ -71548,7 +90202,10 @@ "plasmid_name": "pDONR221 NLRP1 A54T", "sequence-type": "addgene-full", "addgene_id": "166815", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166815.addgene-full.gb" }, @@ -71557,7 +90214,10 @@ "plasmid_name": "pDONR221-Sen1", "sequence-type": "addgene-full", "addgene_id": "99994", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99994.addgene-full.gb" }, @@ -71566,7 +90226,10 @@ "plasmid_name": "ph3p", "sequence-type": "depositor-full", "addgene_id": "22521", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "file": "data/addgene_plasmids/22521.depositor-full.gb" }, @@ -71575,7 +90238,10 @@ "plasmid_name": "p8195 MSCV-P C-FlagHA 6E7 R77S", "sequence-type": "addgene-full", "addgene_id": "163309", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "file": "data/addgene_plasmids/163309.addgene-full.gb" }, @@ -71584,7 +90250,10 @@ "plasmid_name": "pVHD", "sequence-type": "depositor-full", "addgene_id": "61303", - "references": [], + "references": [ + "https://doi.org/10.1038/srep06453", + "https://www.ncbi.nlm.nih.gov/pubmed/25262659" + ], "kit": null, "file": "data/addgene_plasmids/61303.depositor-full.gb" }, @@ -71593,7 +90262,10 @@ "plasmid_name": "pAFMW-Nbr[K187A]", "sequence-type": "addgene-full", "addgene_id": "188593", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188593.addgene-full.gb" }, @@ -71602,7 +90274,10 @@ "plasmid_name": "pHAGE-EGFR-E967A", "sequence-type": "addgene-full", "addgene_id": "116248", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116248.addgene-full.gb" }, @@ -71611,7 +90286,10 @@ "plasmid_name": "pEntry_HCoV-229E-Envelope", "sequence-type": "depositor-full", "addgene_id": "168965", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168965.depositor-full.gb" }, @@ -71620,7 +90298,10 @@ "plasmid_name": "pSAM2_mCherry_Gata4", "sequence-type": "addgene-full", "addgene_id": "72690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72690.addgene-full.gb" }, @@ -71629,7 +90310,10 @@ "plasmid_name": "pDONR223_ARAF_p.S214F", "sequence-type": "addgene-full", "addgene_id": "82901", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82901.addgene-full.gb" }, @@ -71638,7 +90322,6 @@ "plasmid_name": "pDONR221-ACE2 receptor 19-615", "sequence-type": "addgene-full", "addgene_id": "167012", - "references": [], "kit": null, "file": "data/addgene_plasmids/167012.addgene-full.gb" }, @@ -71647,7 +90330,10 @@ "plasmid_name": "LC801: pMVP (L3-L2) eGFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121771", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121771.addgene-full.gb" }, @@ -71656,7 +90342,10 @@ "plasmid_name": "pDONR221-ZNF682", "sequence-type": "depositor-full", "addgene_id": "101475", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101475.depositor-full.gb" }, @@ -71665,7 +90354,6 @@ "plasmid_name": "pCWXPGR-pTF-NeuroD1", "sequence-type": "addgene-full", "addgene_id": "114278", - "references": [], "kit": null, "file": "data/addgene_plasmids/114278.addgene-full.gb" }, @@ -71674,7 +90362,10 @@ "plasmid_name": "pENTR-JNKKTRmRuby2", "sequence-type": "depositor-full", "addgene_id": "59148", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59148.depositor-full.gb" }, @@ -71683,7 +90374,10 @@ "plasmid_name": "pJPL3[flp-6p::cmk-1::GFP]", "sequence-type": "addgene-full", "addgene_id": "124613", - "references": [], + "references": [ + "https://doi.org/10.1523/JNEUROSCI.1611-17.2018", + "https://www.ncbi.nlm.nih.gov/pubmed/29875264" + ], "kit": null, "file": "data/addgene_plasmids/124613.addgene-full.gb" }, @@ -71692,7 +90386,6 @@ "plasmid_name": "Hs.KRAS4b G13C", "sequence-type": "depositor-full", "addgene_id": "83145", - "references": [], "kit": null, "file": "data/addgene_plasmids/83145.depositor-full.gb" }, @@ -71701,7 +90394,10 @@ "plasmid_name": "TFORF3052", "sequence-type": "addgene-full", "addgene_id": "144528", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144528.addgene-full.gb" }, @@ -71710,7 +90406,10 @@ "plasmid_name": "pDONR221-SLC35A5_STOP", "sequence-type": "depositor-full", "addgene_id": "161277", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161277.depositor-full.gb" }, @@ -71719,7 +90418,10 @@ "plasmid_name": "pHAGE-BRAF-T599Ffs*13", "sequence-type": "addgene-full", "addgene_id": "116133", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116133.addgene-full.gb" }, @@ -71728,7 +90430,10 @@ "plasmid_name": "pMOS014E: Entry vector for: Grx1-roGFP2 glutathione redox sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163072", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163072.addgene-full.gb" }, @@ -71737,7 +90442,10 @@ "plasmid_name": "actc1b-mKate2-jph1a", "sequence-type": "addgene-full", "addgene_id": "109497", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109497.addgene-full.gb" }, @@ -71746,7 +90454,10 @@ "plasmid_name": "pET15-UbE2D1", "sequence-type": "addgene-full", "addgene_id": "15782", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "file": "data/addgene_plasmids/15782.addgene-full.gb" }, @@ -71755,7 +90466,10 @@ "plasmid_name": "pMXs-NKX2.2", "sequence-type": "addgene-full", "addgene_id": "134670", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199723", + "https://www.ncbi.nlm.nih.gov/pubmed/35748297" + ], "kit": null, "file": "data/addgene_plasmids/134670.addgene-full.gb" }, @@ -71764,7 +90478,10 @@ "plasmid_name": "pPA-RL-GW", "sequence-type": "depositor-full", "addgene_id": "78855", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "file": "data/addgene_plasmids/78855.depositor-full.gb" }, @@ -71773,7 +90490,10 @@ "plasmid_name": "pDONR223_SLC2A3_WT", "sequence-type": "addgene-full", "addgene_id": "81787", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -71797,7 +90517,10 @@ "plasmid_name": "pPB-MPP8-\u2206ARD_Flag2-Blast", "sequence-type": "addgene-full", "addgene_id": "175041", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-23308-4", + "https://www.ncbi.nlm.nih.gov/pubmed/34031396" + ], "kit": null, "file": "data/addgene_plasmids/175041.addgene-full.gb" }, @@ -71806,7 +90529,10 @@ "plasmid_name": "pAWH-IRP", "sequence-type": "addgene-full", "addgene_id": "133896", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/133896.addgene-full.gb" }, @@ -71815,7 +90541,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1)", "sequence-type": "addgene-full", "addgene_id": "17452", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17452.addgene-full.gb" }, @@ -71824,7 +90553,10 @@ "plasmid_name": "pDONR223_NFKBIA_WT", "sequence-type": "addgene-full", "addgene_id": "81833", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -71836,7 +90568,10 @@ "plasmid_name": "pDONR221-SLC16A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161042", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161042.addgene-full.gb" }, @@ -71845,7 +90580,10 @@ "plasmid_name": "p53 (dominant negative R175H mutant)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64638", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/64638.addgene-full.gb" }, @@ -71854,7 +90592,10 @@ "plasmid_name": "Lenti-6XPRE-GFP", "sequence-type": "addgene-full", "addgene_id": "206171", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "file": "data/addgene_plasmids/206171.addgene-full.gb" }, @@ -71863,7 +90604,10 @@ "plasmid_name": "pDONR223_CHD2_p.E287Q", "sequence-type": "addgene-full", "addgene_id": "81467", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -71875,7 +90619,6 @@ "plasmid_name": "pEF 3-YFP-2", "sequence-type": "depositor-full", "addgene_id": "20106", - "references": [], "kit": null, "file": "data/addgene_plasmids/20106.depositor-full.gb" }, @@ -71884,7 +90627,10 @@ "plasmid_name": "pLenti-PGK-Neo-PIP-FUCCI", "sequence-type": "addgene-full", "addgene_id": "118616", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "file": "data/addgene_plasmids/118616.addgene-full.gb" }, @@ -71893,7 +90639,10 @@ "plasmid_name": "TFORF3177", "sequence-type": "addgene-full", "addgene_id": "144653", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144653.addgene-full.gb" }, @@ -71902,7 +90651,6 @@ "plasmid_name": "HCP8", "sequence-type": "addgene-full", "addgene_id": "166110", - "references": [], "kit": null, "file": "data/addgene_plasmids/166110.addgene-full.gb" }, @@ -71911,7 +90659,6 @@ "plasmid_name": "R777-E138 Hs.MTOR-nostop", "sequence-type": "depositor-full", "addgene_id": "70422", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -71923,7 +90670,10 @@ "plasmid_name": "pAG424GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14391", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -71935,7 +90685,10 @@ "plasmid_name": "pDONR223_VHL_p.V130F", "sequence-type": "addgene-full", "addgene_id": "81653", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -71947,7 +90700,6 @@ "plasmid_name": "p667-UBC-SCYL1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189911", - "references": [], "kit": null, "file": "data/addgene_plasmids/189911.addgene-full.gb" }, @@ -71956,7 +90708,9 @@ "plasmid_name": "pDEST17-NUDT5", "sequence-type": "addgene-full", "addgene_id": "219955", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-4644671/v1" + ], "kit": null, "file": "data/addgene_plasmids/219955.addgene-full.gb" }, @@ -71965,7 +90719,10 @@ "plasmid_name": "pDONR221-SLC35D3_STOP", "sequence-type": "addgene-full", "addgene_id": "161276", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161276.addgene-full.gb" }, @@ -71974,7 +90731,10 @@ "plasmid_name": "pMLS716", "sequence-type": "addgene-full", "addgene_id": "188888", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "file": "data/addgene_plasmids/188888.addgene-full.gb" }, @@ -71983,7 +90743,10 @@ "plasmid_name": "TFORF2991", "sequence-type": "addgene-full", "addgene_id": "144467", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144467.addgene-full.gb" }, @@ -71992,7 +90755,10 @@ "plasmid_name": "pHPK1212", "sequence-type": "depositor-full", "addgene_id": "8834", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2004.08.016", + "https://www.ncbi.nlm.nih.gov/pubmed/15477088" + ], "kit": null, "file": "data/addgene_plasmids/8834.depositor-full.gb" }, @@ -72001,7 +90767,10 @@ "plasmid_name": "pDONR221_SLC26A1", "sequence-type": "addgene-full", "addgene_id": "131972", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131972.addgene-full.gb" }, @@ -72010,7 +90779,10 @@ "plasmid_name": "TFORF3311", "sequence-type": "addgene-full", "addgene_id": "144787", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144787.addgene-full.gb" }, @@ -72019,7 +90791,10 @@ "plasmid_name": "TFORF3357", "sequence-type": "addgene-full", "addgene_id": "144833", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144833.addgene-full.gb" }, @@ -72028,7 +90803,10 @@ "plasmid_name": "pDONR223-ZNF112", "sequence-type": "addgene-full", "addgene_id": "88024", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88024.addgene-full.gb" }, @@ -72037,7 +90815,10 @@ "plasmid_name": "pHAGE-EGFR-T263P", "sequence-type": "addgene-full", "addgene_id": "116307", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116307.addgene-full.gb" }, @@ -72046,7 +90827,9 @@ "plasmid_name": "pUB-nSypHer (NLS:sypHer:NLS)", "sequence-type": "addgene-full", "addgene_id": "84731", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "file": "data/addgene_plasmids/84731.addgene-full.gb" }, @@ -72055,7 +90838,6 @@ "plasmid_name": "pDEST27-GST-hSFRP1(aa53-169)", "sequence-type": "addgene-full", "addgene_id": "189545", - "references": [], "kit": null, "file": "data/addgene_plasmids/189545.addgene-full.gb" }, @@ -72064,7 +90846,10 @@ "plasmid_name": "pDONR221-SLC25A43_STOP", "sequence-type": "addgene-full", "addgene_id": "161196", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161196.addgene-full.gb" }, @@ -72073,7 +90858,10 @@ "plasmid_name": "pEBTet-SNAP-Cep41", "sequence-type": "addgene-full", "addgene_id": "136794", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136794.addgene-full.gb" }, @@ -72082,7 +90870,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep72", "sequence-type": "addgene-full", "addgene_id": "136820", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136820.addgene-full.gb" }, @@ -72091,7 +90882,10 @@ "plasmid_name": "pDONR223_PTPN12_p.E57D", "sequence-type": "addgene-full", "addgene_id": "81528", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -72103,7 +90897,10 @@ "plasmid_name": "pDONR223_IDH2_p.K130del", "sequence-type": "addgene-full", "addgene_id": "82761", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82761.addgene-full.gb" }, @@ -72112,7 +90909,10 @@ "plasmid_name": "pDONR P2R-P3-SV40 polyA signal", "sequence-type": "depositor-full", "addgene_id": "48627", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -72124,7 +90924,10 @@ "plasmid_name": "pDONR221 Cas9-RFC5", "sequence-type": "addgene-full", "addgene_id": "183200", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "file": "data/addgene_plasmids/183200.addgene-full.gb" }, @@ -72133,7 +90936,10 @@ "plasmid_name": "pDONR221_eGFP (open)", "sequence-type": "addgene-full", "addgene_id": "160094", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160094.addgene-full.gb" }, @@ -72142,7 +90948,10 @@ "plasmid_name": "actc1b-mKate2-rab3da", "sequence-type": "addgene-full", "addgene_id": "109638", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109638.addgene-full.gb" }, @@ -72151,7 +90960,10 @@ "plasmid_name": "pCSDest2-SpCas9-NLS-3XHA-NLS", "sequence-type": "depositor-full", "addgene_id": "69220", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3624", + "https://www.ncbi.nlm.nih.gov/pubmed/26480473" + ], "kit": null, "file": "data/addgene_plasmids/69220.depositor-full.gb" }, @@ -72160,7 +90972,10 @@ "plasmid_name": "pENT-L1-Kozak-Ark-L2", "sequence-type": "addgene-full", "addgene_id": "186362", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186362.addgene-full.gb" }, @@ -72169,7 +90984,10 @@ "plasmid_name": "YA1629: pAAV_CAG-FLEX-paQuasAr3-s", "sequence-type": "depositor-full", "addgene_id": "107703", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-019-1166-7", + "https://www.ncbi.nlm.nih.gov/pubmed/31043747" + ], "kit": null, "file": "data/addgene_plasmids/107703.depositor-full.gb" }, @@ -72187,7 +91005,10 @@ "plasmid_name": "MAC_N_COMMD10", "sequence-type": "addgene-full", "addgene_id": "209682", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209682.addgene-full.gb" }, @@ -72196,7 +91017,10 @@ "plasmid_name": "pHDT1:GUS", "sequence-type": "addgene-full", "addgene_id": "108441", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "file": "data/addgene_plasmids/108441.addgene-full.gb" }, @@ -72205,7 +91029,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP5", "sequence-type": "addgene-full", "addgene_id": "154404", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154404.addgene-full.gb" }, @@ -72214,7 +91041,10 @@ "plasmid_name": "pHAGE-EGFR-L838V", "sequence-type": "addgene-full", "addgene_id": "116275", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116275.addgene-full.gb" }, @@ -72223,7 +91053,10 @@ "plasmid_name": "TFORF3465", "sequence-type": "addgene-full", "addgene_id": "144941", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144941.addgene-full.gb" }, @@ -72232,7 +91065,10 @@ "plasmid_name": "NUDT16", "sequence-type": "addgene-full", "addgene_id": "155794", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155794.addgene-full.gb" }, @@ -72241,7 +91077,10 @@ "plasmid_name": "pDONR221-Basigin_iso2", "sequence-type": "addgene-full", "addgene_id": "221416", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221416.addgene-full.gb" }, @@ -72250,7 +91089,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF6", "sequence-type": "depositor-full", "addgene_id": "168881", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168881.depositor-full.gb" }, @@ -72259,7 +91101,10 @@ "plasmid_name": "p{ie1-DsRed::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182190", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182190.addgene-full.gb" }, @@ -72268,7 +91113,10 @@ "plasmid_name": "pDONR223_GALNTL5_WT", "sequence-type": "addgene-full", "addgene_id": "81895", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -72280,7 +91128,10 @@ "plasmid_name": "pDONR221-SLC2A14_STOP", "sequence-type": "addgene-full", "addgene_id": "161304", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161304.addgene-full.gb" }, @@ -72289,7 +91140,10 @@ "plasmid_name": "pDONR223_EGFR_p.P622S", "sequence-type": "addgene-full", "addgene_id": "81721", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -72301,7 +91155,10 @@ "plasmid_name": "mCherry Codon 59 sgRNA", "sequence-type": "addgene-full", "addgene_id": "109431", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky332", + "https://www.ncbi.nlm.nih.gov/pubmed/29746667" + ], "kit": null, "file": "data/addgene_plasmids/109431.addgene-full.gb" }, @@ -72310,7 +91167,10 @@ "plasmid_name": "TFORF3039", "sequence-type": "addgene-full", "addgene_id": "144515", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144515.addgene-full.gb" }, @@ -72319,7 +91179,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp12", "sequence-type": "addgene-full", "addgene_id": "168927", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168927.addgene-full.gb" }, @@ -72328,7 +91191,10 @@ "plasmid_name": "pHAGE-BRAF-S607F", "sequence-type": "addgene-full", "addgene_id": "116195", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116195.addgene-full.gb" }, @@ -72337,7 +91203,10 @@ "plasmid_name": "pDONR223 MERS-CoV NSP3_nostop", "sequence-type": "addgene-full", "addgene_id": "168608", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168608.addgene-full.gb" }, @@ -72346,7 +91215,10 @@ "plasmid_name": "pLX302-MKP7-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87771", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "file": "data/addgene_plasmids/87771.addgene-full.gb" }, @@ -72355,7 +91227,10 @@ "plasmid_name": "pMuLE ENTR CMV L5-L2", "sequence-type": "depositor-full", "addgene_id": "62091", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62091.depositor-full.gb" }, @@ -72364,7 +91239,10 @@ "plasmid_name": "pAG426GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14275", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -72376,7 +91254,10 @@ "plasmid_name": "KN302: pMVP/SB/eCFP-DEST", "sequence-type": "addgene-full", "addgene_id": "121863", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121863.addgene-full.gb" }, @@ -72385,7 +91266,10 @@ "plasmid_name": "pYPQ230-RVQ", "sequence-type": "addgene-full", "addgene_id": "200187", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02929-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37122009" + ], "kit": null, "file": "data/addgene_plasmids/200187.addgene-full.gb" }, @@ -72394,7 +91278,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-DYRK1B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158183", - "references": [], "kit": null, "file": "data/addgene_plasmids/158183.addgene-full.gb" }, @@ -72403,7 +91286,9 @@ "plasmid_name": "pMpGWB221", "sequence-type": "depositor-full", "addgene_id": "68612", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68612.depositor-full.gb" }, @@ -72412,7 +91297,9 @@ "plasmid_name": "pDEST tol2 UbB polyA", "sequence-type": "addgene-full", "addgene_id": "188701", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "file": "data/addgene_plasmids/188701.addgene-full.gb" }, @@ -72421,7 +91308,10 @@ "plasmid_name": "pT3EF1aH-myr-Akt", "sequence-type": "addgene-full", "addgene_id": "179909", - "references": [], + "references": [ + "https://doi.org/10.1002/hep.24736", + "https://www.ncbi.nlm.nih.gov/pubmed/21993994" + ], "kit": null, "file": "data/addgene_plasmids/179909.addgene-full.gb" }, @@ -72430,7 +91320,9 @@ "plasmid_name": "p3E-CMVmin:GFP no-pA", "sequence-type": "depositor-full", "addgene_id": "80819", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80819.depositor-full.gb" }, @@ -72439,7 +91331,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp5", "sequence-type": "addgene-full", "addgene_id": "168868", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168868.addgene-full.gb" }, @@ -72448,7 +91343,10 @@ "plasmid_name": "pDONR223-ZNF366", "sequence-type": "addgene-full", "addgene_id": "88019", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88019.addgene-full.gb" }, @@ -72457,7 +91355,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.V600G", "sequence-type": "addgene-full", "addgene_id": "82873", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82873.addgene-full.gb" }, @@ -72466,7 +91367,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 WT", "sequence-type": "addgene-full", "addgene_id": "129296", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129296.addgene-full.gb" }, @@ -72475,7 +91379,10 @@ "plasmid_name": "HE401: pMVP (L1-R5) shRNA", "sequence-type": "addgene-full", "addgene_id": "121698", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121698.addgene-full.gb" }, @@ -72484,7 +91391,10 @@ "plasmid_name": "pDONR223_THEMIS_p.R196I", "sequence-type": "addgene-full", "addgene_id": "81515", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -72496,7 +91406,10 @@ "plasmid_name": "pENTR D-TOPO-C3_7", "sequence-type": "depositor-full", "addgene_id": "60256", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60256.depositor-full.gb" }, @@ -72505,7 +91418,10 @@ "plasmid_name": "pDONR221-SLC22A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161130", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161130.addgene-full.gb" }, @@ -72514,7 +91430,10 @@ "plasmid_name": "TFORF3419", "sequence-type": "addgene-full", "addgene_id": "144895", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144895.addgene-full.gb" }, @@ -72523,7 +91442,10 @@ "plasmid_name": "actc1b-mKate2-rab1aa", "sequence-type": "addgene-full", "addgene_id": "109605", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109605.addgene-full.gb" }, @@ -72532,7 +91454,10 @@ "plasmid_name": "TFORF3245", "sequence-type": "addgene-full", "addgene_id": "144721", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144721.addgene-full.gb" }, @@ -72541,7 +91466,10 @@ "plasmid_name": "JDW 827 (pCS2-V5-mTagBFP2-hsKRAS4A-G12D)", "sequence-type": "addgene-full", "addgene_id": "156409", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156409.addgene-full.gb" }, @@ -72550,7 +91478,10 @@ "plasmid_name": "p21-WT-MEFV", "sequence-type": "addgene-full", "addgene_id": "134702", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "file": "data/addgene_plasmids/134702.addgene-full.gb" }, @@ -72559,7 +91490,6 @@ "plasmid_name": "R777-E304 Hs.SAV1-nostop", "sequence-type": "depositor-full", "addgene_id": "70588", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -72571,7 +91501,6 @@ "plasmid_name": "Ad-hSNRK-his", "sequence-type": "addgene-full", "addgene_id": "131580", - "references": [], "kit": null, "file": "data/addgene_plasmids/131580.addgene-full.gb" }, @@ -72580,7 +91509,10 @@ "plasmid_name": "pDONR223_LCK_WT", "sequence-type": "addgene-full", "addgene_id": "82305", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82305.addgene-full.gb" }, @@ -72589,7 +91521,10 @@ "plasmid_name": "C122-E14: mKate", "sequence-type": "addgene-full", "addgene_id": "162894", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -72601,7 +91536,6 @@ "plasmid_name": "pGBdest-10xHis-TEV-ATG5_ATG7_ATG10_ATG12_ATG16L1_F32A-I35A-I36A_-GFP-TEV-StrepII", "sequence-type": "addgene-full", "addgene_id": "192705", - "references": [], "kit": null, "file": "data/addgene_plasmids/192705.addgene-full.gb" }, @@ -72610,7 +91544,10 @@ "plasmid_name": "pCMU-MITr", "sequence-type": "depositor-full", "addgene_id": "61198", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61198.depositor-full.gb" }, @@ -72619,7 +91556,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-GABARAP-GFP", "sequence-type": "addgene-full", "addgene_id": "123111", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123111.addgene-full.gb" }, @@ -72628,7 +91568,10 @@ "plasmid_name": "pDONR221_SLC38A9", "sequence-type": "addgene-full", "addgene_id": "132070", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132070.addgene-full.gb" }, @@ -72637,7 +91580,10 @@ "plasmid_name": "pHAGE-IGF1R-R996W", "sequence-type": "addgene-full", "addgene_id": "116418", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116418.addgene-full.gb" }, @@ -72646,7 +91592,10 @@ "plasmid_name": "pMuLE ENTR U6-miR-30 L1-R5", "sequence-type": "depositor-full", "addgene_id": "62113", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62113.depositor-full.gb" }, @@ -72655,7 +91604,10 @@ "plasmid_name": "pcDNA5 CMV 3xFG eIF4G1", "sequence-type": "addgene-full", "addgene_id": "158775", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2020.01.006", + "https://www.ncbi.nlm.nih.gov/pubmed/31999954" + ], "kit": null, "file": "data/addgene_plasmids/158775.addgene-full.gb" }, @@ -72664,7 +91616,6 @@ "plasmid_name": "R777-E160 Hs.PDPK1-nostop", "sequence-type": "depositor-full", "addgene_id": "70444", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -72676,7 +91627,10 @@ "plasmid_name": "PE_23: Plux_tet_eG::sfYFP", "sequence-type": "addgene-full", "addgene_id": "104884", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104884.addgene-full.gb" }, @@ -72685,7 +91639,6 @@ "plasmid_name": "IDG_KCNC4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161689", - "references": [], "kit": null, "file": "data/addgene_plasmids/161689.addgene-full.gb" }, @@ -72694,7 +91647,10 @@ "plasmid_name": "pDEST40-2XHA-Src-Y530F", "sequence-type": "addgene-full", "addgene_id": "140318", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140318.addgene-full.gb" }, @@ -72703,7 +91659,10 @@ "plasmid_name": "pENTR-GFP-WT1 +KTS C terminal HA", "sequence-type": "addgene-full", "addgene_id": "217640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "file": "data/addgene_plasmids/217640.addgene-full.gb" }, @@ -72712,7 +91671,6 @@ "plasmid_name": "p667-UBC-BRSK1-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135259", - "references": [], "kit": null, "file": "data/addgene_plasmids/135259.addgene-full.gb" }, @@ -72721,7 +91679,10 @@ "plasmid_name": "pHAGE-PIK3CA-E545D", "sequence-type": "addgene-full", "addgene_id": "116483", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116483.addgene-full.gb" }, @@ -72730,7 +91691,10 @@ "plasmid_name": "PE_6: Para_tet_bD", "sequence-type": "addgene-full", "addgene_id": "113601", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113601.addgene-full.gb" }, @@ -72739,7 +91703,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-ORF4", "sequence-type": "depositor-full", "addgene_id": "168903", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168903.depositor-full.gb" }, @@ -72748,7 +91715,10 @@ "plasmid_name": "pDONR223-PIM1", "sequence-type": "addgene-full", "addgene_id": "23692", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -72760,7 +91730,10 @@ "plasmid_name": "pDONR223-PNCK", "sequence-type": "addgene-full", "addgene_id": "23572", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -72772,7 +91745,10 @@ "plasmid_name": "pCK004 ubi:mCerulean_SV40 (#302)", "sequence-type": "addgene-full", "addgene_id": "195978", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195978.addgene-full.gb" }, @@ -72781,7 +91757,10 @@ "plasmid_name": "pHAGE-PIK3CB-L1049R", "sequence-type": "addgene-full", "addgene_id": "116557", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116557.addgene-full.gb" }, @@ -72790,7 +91769,6 @@ "plasmid_name": "R777-E106 Hs.INSR-nostop", "sequence-type": "depositor-full", "addgene_id": "70390", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -72802,7 +91780,10 @@ "plasmid_name": "pDONR221-TARG1", "sequence-type": "addgene-full", "addgene_id": "172577", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172577.addgene-full.gb" }, @@ -72811,7 +91792,10 @@ "plasmid_name": "Tol2-LyzC-PBD-GFP-U6ac-rac2 guides", "sequence-type": "addgene-full", "addgene_id": "168251", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "file": "data/addgene_plasmids/168251.addgene-full.gb" }, @@ -72820,7 +91804,10 @@ "plasmid_name": "pMuLE Lenti Dest IFP1.4", "sequence-type": "addgene-full", "addgene_id": "62177", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62177.addgene-full.gb" }, @@ -72829,7 +91816,9 @@ "plasmid_name": "pFLIP32", "sequence-type": "depositor-full", "addgene_id": "65500", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65500.depositor-full.gb" }, @@ -72838,7 +91827,6 @@ "plasmid_name": "pAG416GAL10-ZIKV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203477", - "references": [], "kit": null, "file": "data/addgene_plasmids/203477.addgene-full.gb" }, @@ -72847,7 +91835,10 @@ "plasmid_name": "pDONR221-SLC4A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161426", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161426.addgene-full.gb" }, @@ -72868,7 +91859,10 @@ "plasmid_name": "pT2-cryR;lmo2P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90162", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90162.addgene-full.gb" }, @@ -72877,7 +91871,9 @@ "plasmid_name": "pcDNA5-3xFLAG-TAF5-FL", "sequence-type": "addgene-full", "addgene_id": "209049", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209049.addgene-full.gb" }, @@ -72886,7 +91882,10 @@ "plasmid_name": "PB-TAC-OSKM", "sequence-type": "depositor-full", "addgene_id": "80481", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "file": "data/addgene_plasmids/80481.depositor-full.gb" }, @@ -72895,7 +91894,6 @@ "plasmid_name": "DDX3X - I179T in pENTR", "sequence-type": "addgene-full", "addgene_id": "216576", - "references": [], "kit": null, "file": "data/addgene_plasmids/216576.addgene-full.gb" }, @@ -72904,7 +91902,10 @@ "plasmid_name": "pDEST-Myc-FBW7 Delta D-Domain", "sequence-type": "addgene-full", "addgene_id": "197453", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "file": "data/addgene_plasmids/197453.addgene-full.gb" }, @@ -72913,7 +91914,10 @@ "plasmid_name": "Control-cx43.4-48H-pPRISM", "sequence-type": "addgene-full", "addgene_id": "117801", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53968", + "https://www.ncbi.nlm.nih.gov/pubmed/32412410" + ], "kit": null, "file": "data/addgene_plasmids/117801.addgene-full.gb" }, @@ -72922,7 +91926,10 @@ "plasmid_name": "pENTR223-BLLF1(gp350)", "sequence-type": "addgene-full", "addgene_id": "195837", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195837.addgene-full.gb" }, @@ -72931,7 +91938,10 @@ "plasmid_name": "pENTR223-BARF1", "sequence-type": "addgene-full", "addgene_id": "195783", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195783.addgene-full.gb" }, @@ -72940,7 +91950,10 @@ "plasmid_name": "pENTR TERRA", "sequence-type": "depositor-full", "addgene_id": "111383", - "references": [], + "references": [ + "https://doi.org/10.3390/genes7080046", + "https://www.ncbi.nlm.nih.gov/pubmed/27537914" + ], "kit": null, "file": "data/addgene_plasmids/111383.depositor-full.gb" }, @@ -72949,7 +91962,10 @@ "plasmid_name": "C512-E01: attB5r-meGFP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162940", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -72961,7 +91977,10 @@ "plasmid_name": "pDONR223_ZDHHC4_p.R174H", "sequence-type": "addgene-full", "addgene_id": "81378", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -72973,7 +91992,10 @@ "plasmid_name": "pCR8/GW/TOPO-ELK4", "sequence-type": "addgene-full", "addgene_id": "98617", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98617.addgene-full.gb" }, @@ -72982,7 +92004,6 @@ "plasmid_name": "g6t pDONR", "sequence-type": "addgene-full", "addgene_id": "117455", - "references": [], "kit": null, "file": "data/addgene_plasmids/117455.addgene-full.gb" }, @@ -72991,7 +92012,10 @@ "plasmid_name": "pAG414GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14144", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -73003,7 +92027,10 @@ "plasmid_name": "HMGN1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176943", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176943.addgene-full.gb" }, @@ -73012,7 +92039,10 @@ "plasmid_name": "pDONR221_SLC7A11", "sequence-type": "addgene-full", "addgene_id": "132244", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132244.addgene-full.gb" }, @@ -73021,7 +92051,10 @@ "plasmid_name": "pDONR223-PFKP", "sequence-type": "addgene-full", "addgene_id": "23869", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -73033,7 +92066,10 @@ "plasmid_name": "p5E-mpeg1.1", "sequence-type": "depositor-full", "addgene_id": "75023", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -73045,7 +92081,10 @@ "plasmid_name": "pLCS111", "sequence-type": "addgene-full", "addgene_id": "209332", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209332.addgene-full.gb" }, @@ -73054,7 +92093,10 @@ "plasmid_name": "pLKO.DEST.EGFP", "sequence-type": "depositor-full", "addgene_id": "32684", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "file": "data/addgene_plasmids/32684.depositor-full.gb" }, @@ -73063,7 +92105,10 @@ "plasmid_name": "pDL71", "sequence-type": "addgene-full", "addgene_id": "175903", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175903.addgene-full.gb" }, @@ -73072,7 +92117,10 @@ "plasmid_name": "MAC_N_TOM22", "sequence-type": "addgene-full", "addgene_id": "111697", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111697.addgene-full.gb" }, @@ -73081,7 +92129,6 @@ "plasmid_name": "EV-D68 2A protease; 6xHis-MBP-TEV tag, low expression levels", "sequence-type": "addgene-full", "addgene_id": "204803", - "references": [], "kit": null, "file": "data/addgene_plasmids/204803.addgene-full.gb" }, @@ -73090,7 +92137,6 @@ "plasmid_name": "pDONR221-chodl", "sequence-type": "addgene-full", "addgene_id": "192738", - "references": [], "kit": null, "file": "data/addgene_plasmids/192738.addgene-full.gb" }, @@ -73099,7 +92145,10 @@ "plasmid_name": "W118-1_hTGM5-Flag", "sequence-type": "addgene-full", "addgene_id": "180410", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180410.addgene-full.gb" }, @@ -73108,7 +92157,10 @@ "plasmid_name": "scAAV-Cre", "sequence-type": "addgene-full", "addgene_id": "177933", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-021-00677-0", + "https://www.ncbi.nlm.nih.gov/pubmed/35288718" + ], "kit": null, "file": "data/addgene_plasmids/177933.addgene-full.gb" }, @@ -73117,7 +92169,6 @@ "plasmid_name": "pEF 1-PSN-4", "sequence-type": "depositor-full", "addgene_id": "20084", - "references": [], "kit": null, "file": "data/addgene_plasmids/20084.depositor-full.gb" }, @@ -73126,7 +92177,10 @@ "plasmid_name": "pHAGE-KRAS-Q61R", "sequence-type": "addgene-full", "addgene_id": "116425", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116425.addgene-full.gb" }, @@ -73135,7 +92189,9 @@ "plasmid_name": "pMpGWB409", "sequence-type": "depositor-full", "addgene_id": "68674", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68674.depositor-full.gb" }, @@ -73144,7 +92200,6 @@ "plasmid_name": "pAG426GAL-HHV-3_PR", "sequence-type": "addgene-full", "addgene_id": "203505", - "references": [], "kit": null, "file": "data/addgene_plasmids/203505.addgene-full.gb" }, @@ -73153,7 +92208,10 @@ "plasmid_name": "pJKW1658", "sequence-type": "addgene-full", "addgene_id": "119179", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-019-0474-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31332312" + ], "kit": null, "file": "data/addgene_plasmids/119179.addgene-full.gb" }, @@ -73162,7 +92220,10 @@ "plasmid_name": "pDONR223_REG1B_p.P30S", "sequence-type": "addgene-full", "addgene_id": "81291", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -73174,7 +92235,10 @@ "plasmid_name": "pAG413GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14213", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -73186,7 +92250,6 @@ "plasmid_name": "p663-UBC-TurboID-V5-eGFP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135264", - "references": [], "kit": null, "file": "data/addgene_plasmids/135264.addgene-full.gb" }, @@ -73195,7 +92258,10 @@ "plasmid_name": "pMT mir-1-1 reporter hsa-mir-128-1", "sequence-type": "depositor-full", "addgene_id": "46743", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46743.depositor-full.gb" }, @@ -73204,7 +92270,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_K36A_R38A_E39A", "sequence-type": "depositor-full", "addgene_id": "65657", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65657.depositor-full.gb" }, @@ -73213,7 +92282,10 @@ "plasmid_name": "pCAG/ATP8A1(E191Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209240", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209240.addgene-full.gb" }, @@ -73222,7 +92294,10 @@ "plasmid_name": "pTW100", "sequence-type": "addgene-full", "addgene_id": "115943", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115943.addgene-full.gb" }, @@ -73231,7 +92306,6 @@ "plasmid_name": "p416 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58552", - "references": [], "kit": null, "file": "data/addgene_plasmids/58552.depositor-full.gb" }, @@ -73240,7 +92314,10 @@ "plasmid_name": "pLG371", "sequence-type": "addgene-full", "addgene_id": "128410", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-019-0412-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31792444" + ], "kit": null, "file": "data/addgene_plasmids/128410.addgene-full.gb" }, @@ -73249,7 +92326,10 @@ "plasmid_name": "pSC22", "sequence-type": "addgene-full", "addgene_id": "104796", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104796.addgene-full.gb" }, @@ -73258,7 +92338,10 @@ "plasmid_name": "pME-MLS-KillerRed", "sequence-type": "addgene-full", "addgene_id": "115517", - "references": [], + "references": [ + "https://doi.org/10.1016/j.redox.2018.08.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30193184" + ], "kit": null, "file": "data/addgene_plasmids/115517.addgene-full.gb" }, @@ -73267,7 +92350,10 @@ "plasmid_name": "pAct-PE2-HygroR", "sequence-type": "addgene-full", "addgene_id": "149552", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2021996118", + "https://www.ncbi.nlm.nih.gov/pubmed/33443210" + ], "kit": null, "file": "data/addgene_plasmids/149552.addgene-full.gb" }, @@ -73276,7 +92362,10 @@ "plasmid_name": "pLentiPGK Puro DEST p38KTRClover", "sequence-type": "addgene-full", "addgene_id": "59152", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59152.addgene-full.gb" }, @@ -73285,7 +92374,10 @@ "plasmid_name": "pAG414GPD-SlCYP722C(pYL1071)", "sequence-type": "addgene-full", "addgene_id": "178294", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178294.addgene-full.gb" }, @@ -73294,7 +92386,10 @@ "plasmid_name": "BirA-Myc_N_TLX1", "sequence-type": "addgene-full", "addgene_id": "167730", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167730.addgene-full.gb" }, @@ -73303,7 +92398,10 @@ "plasmid_name": "pDONR223_BTK_WT", "sequence-type": "addgene-full", "addgene_id": "82197", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82197.addgene-full.gb" }, @@ -73312,7 +92410,10 @@ "plasmid_name": "pDONR223_RNF2_WT", "sequence-type": "addgene-full", "addgene_id": "82277", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82277.addgene-full.gb" }, @@ -73321,7 +92422,10 @@ "plasmid_name": "pDONR221_SLC2A4", "sequence-type": "addgene-full", "addgene_id": "132102", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132102.addgene-full.gb" }, @@ -73330,7 +92434,10 @@ "plasmid_name": "pWS511", "sequence-type": "addgene-full", "addgene_id": "123063", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123063.addgene-full.gb" }, @@ -73339,7 +92446,10 @@ "plasmid_name": "pEN_TT miRc2 3xFLAG", "sequence-type": "depositor-full", "addgene_id": "83274", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/83274.depositor-full.gb" }, @@ -73348,7 +92458,10 @@ "plasmid_name": "pDEST-Cas9-tdTomato", "sequence-type": "addgene-full", "addgene_id": "141013", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141013.addgene-full.gb" }, @@ -73357,7 +92470,10 @@ "plasmid_name": "pDONR221_SLC9A8", "sequence-type": "addgene-full", "addgene_id": "132199", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132199.addgene-full.gb" }, @@ -73366,7 +92482,10 @@ "plasmid_name": "pHAGE-PTCH1-D894N", "sequence-type": "addgene-full", "addgene_id": "116611", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116611.addgene-full.gb" }, @@ -73375,7 +92494,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBXD5-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113493", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113493.addgene-full.gb" }, @@ -73384,7 +92506,10 @@ "plasmid_name": "pDONR221-SLC25A24_STOP", "sequence-type": "depositor-full", "addgene_id": "161146", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161146.depositor-full.gb" }, @@ -73393,7 +92518,10 @@ "plasmid_name": "pHAGE-eGFP-OPTN S473A 513A", "sequence-type": "addgene-full", "addgene_id": "175763", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175763.addgene-full.gb" }, @@ -73402,7 +92530,10 @@ "plasmid_name": "pLX302_HOXB13", "sequence-type": "depositor-full", "addgene_id": "70089", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.3419", + "https://www.ncbi.nlm.nih.gov/pubmed/26457646" + ], "kit": null, "file": "data/addgene_plasmids/70089.depositor-full.gb" }, @@ -73411,7 +92542,10 @@ "plasmid_name": "Flag-HA-USP29", "sequence-type": "addgene-full", "addgene_id": "22599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22599.addgene-full.gb" }, @@ -73420,7 +92554,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PKN3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170601", - "references": [], "kit": null, "file": "data/addgene_plasmids/170601.addgene-full.gb" }, @@ -73429,7 +92562,10 @@ "plasmid_name": "pMOD_B-Pho2-1/2-2-Csy4", "sequence-type": "addgene-full", "addgene_id": "161760", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac096", + "https://www.ncbi.nlm.nih.gov/pubmed/35471600" + ], "kit": null, "file": "data/addgene_plasmids/161760.addgene-full.gb" }, @@ -73438,7 +92574,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST MTFR1L-V5", "sequence-type": "addgene-full", "addgene_id": "69822", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "file": "data/addgene_plasmids/69822.addgene-full.gb" }, @@ -73447,7 +92586,10 @@ "plasmid_name": "pDONR223_PRR23B_p.E140K", "sequence-type": "addgene-full", "addgene_id": "81345", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -73459,7 +92601,10 @@ "plasmid_name": "MAC_C_ERBB2", "sequence-type": "addgene-full", "addgene_id": "187776", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187776.addgene-full.gb" }, @@ -73468,7 +92613,10 @@ "plasmid_name": "pDONR221-NIPAL2", "sequence-type": "addgene-full", "addgene_id": "132279", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132279.addgene-full.gb" }, @@ -73477,7 +92625,10 @@ "plasmid_name": "R619-M67-303: CMV51p> SARS-CoV-2 S-RBD(319-541)-His6", "sequence-type": "addgene-full", "addgene_id": "166018", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/166018.addgene-full.gb" }, @@ -73486,7 +92637,10 @@ "plasmid_name": "pSLIK 3xFLAG-KPNB1 zeo", "sequence-type": "addgene-full", "addgene_id": "192326", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192326.addgene-full.gb" }, @@ -73495,7 +92649,6 @@ "plasmid_name": "R777-E056 Hs.EIF4EBP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70340", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -73507,7 +92660,10 @@ "plasmid_name": "MLKP2del4", "sequence-type": "addgene-full", "addgene_id": "130837", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130837.addgene-full.gb" }, @@ -73516,7 +92672,10 @@ "plasmid_name": "pDONR223_RBM45_WT", "sequence-type": "addgene-full", "addgene_id": "82892", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82892.addgene-full.gb" }, @@ -73525,7 +92684,10 @@ "plasmid_name": "pAG425GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14369", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -73537,7 +92699,10 @@ "plasmid_name": "pGWB529", "sequence-type": "depositor-full", "addgene_id": "74871", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74871.depositor-full.gb" }, @@ -73546,7 +92711,10 @@ "plasmid_name": "pGGEV_8'_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49309", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -73558,7 +92726,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP5", "sequence-type": "addgene-full", "addgene_id": "158356", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158356.addgene-full.gb" }, @@ -73567,7 +92738,10 @@ "plasmid_name": "actc1b-mKate2-ATG18", "sequence-type": "addgene-full", "addgene_id": "109504", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109504.addgene-full.gb" }, @@ -73576,7 +92750,10 @@ "plasmid_name": "TFORF2944", "sequence-type": "addgene-full", "addgene_id": "144420", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144420.addgene-full.gb" }, @@ -73585,7 +92762,9 @@ "plasmid_name": "stblHIF: pLenti-PGK-stblHIF-PGK-Puro", "sequence-type": "addgene-full", "addgene_id": "177202", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.05.17.492374" + ], "kit": null, "file": "data/addgene_plasmids/177202.addgene-full.gb" }, @@ -73594,7 +92773,10 @@ "plasmid_name": "pDONR221-MPC1_STOP", "sequence-type": "depositor-full", "addgene_id": "161072", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161072.depositor-full.gb" }, @@ -73603,7 +92785,10 @@ "plasmid_name": "pDONR221-SLC30A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161231", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161231.addgene-full.gb" }, @@ -73612,7 +92797,10 @@ "plasmid_name": "pCFJ421 - Pmyo-2::GFP::H2B (pharynx)", "sequence-type": "depositor-full", "addgene_id": "34876", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34876.depositor-full.gb" }, @@ -73621,7 +92809,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.E250K", "sequence-type": "addgene-full", "addgene_id": "81614", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -73633,7 +92824,6 @@ "plasmid_name": "SYNJ1_BirA_Nterm", "sequence-type": "addgene-full", "addgene_id": "221523", - "references": [], "kit": null, "file": "data/addgene_plasmids/221523.addgene-full.gb" }, @@ -73642,7 +92832,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep57", "sequence-type": "addgene-full", "addgene_id": "136867", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136867.addgene-full.gb" }, @@ -73651,7 +92844,6 @@ "plasmid_name": "R777-E343 Hs.TFDP1", "sequence-type": "depositor-full", "addgene_id": "70627", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -73663,7 +92855,10 @@ "plasmid_name": "pDONR223_KRAS_p.G13C", "sequence-type": "addgene-full", "addgene_id": "82809", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82809.addgene-full.gb" }, @@ -73672,7 +92867,10 @@ "plasmid_name": "pAG415GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14194", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -73684,7 +92882,10 @@ "plasmid_name": "TFORF3398", "sequence-type": "addgene-full", "addgene_id": "144874", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144874.addgene-full.gb" }, @@ -73693,7 +92894,10 @@ "plasmid_name": "pcDNA3_GCGR-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194376", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194376.addgene-full.gb" }, @@ -73702,7 +92906,10 @@ "plasmid_name": "RBMX2-1", "sequence-type": "addgene-full", "addgene_id": "155915", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155915.addgene-full.gb" }, @@ -73711,7 +92918,10 @@ "plasmid_name": "pDONR221_SLC16A6", "sequence-type": "addgene-full", "addgene_id": "131935", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131935.addgene-full.gb" }, @@ -73720,7 +92930,10 @@ "plasmid_name": "p{Mhc-F4-678-DsRed::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182171", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182171.addgene-full.gb" }, @@ -73729,7 +92942,10 @@ "plasmid_name": "pDONR223_VHL_WT", "sequence-type": "addgene-full", "addgene_id": "81874", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -73741,7 +92957,10 @@ "plasmid_name": "p7135 pHAGE-P-CMVt-N-HA-GAW-EIF3E", "sequence-type": "addgene-full", "addgene_id": "100147", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100147.addgene-full.gb" }, @@ -73750,7 +92969,6 @@ "plasmid_name": "p667-UBC-NEK7-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189882", - "references": [], "kit": null, "file": "data/addgene_plasmids/189882.addgene-full.gb" }, @@ -73759,7 +92977,10 @@ "plasmid_name": "TFORF3536", "sequence-type": "depositor-full", "addgene_id": "145012", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145012.depositor-full.gb" }, @@ -73768,7 +92989,10 @@ "plasmid_name": "pYPQ286 (CMaCas12a)", "sequence-type": "addgene-full", "addgene_id": "138122", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138122.addgene-full.gb" }, @@ -73777,7 +93001,10 @@ "plasmid_name": "pHAGE-BRAF-L485W", "sequence-type": "addgene-full", "addgene_id": "116174", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116174.addgene-full.gb" }, @@ -73786,7 +93013,6 @@ "plasmid_name": "R777-E210 Hs.RAC2-nostop", "sequence-type": "depositor-full", "addgene_id": "70494", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -73798,7 +93024,9 @@ "plasmid_name": "pDONR221-CALM3(3of4)", "sequence-type": "addgene-full", "addgene_id": "166157", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166157.addgene-full.gb" }, @@ -73807,7 +93035,10 @@ "plasmid_name": "JV201: pMAGIC (L3-L2) 3x HA epitope tag + polyA; hU6::SaCas9 TRE#1 gRNA", "sequence-type": "addgene-full", "addgene_id": "131755", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/131755.addgene-full.gb" }, @@ -73816,7 +93047,10 @@ "plasmid_name": "pHAGE-EGFR-R252C", "sequence-type": "addgene-full", "addgene_id": "116294", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116294.addgene-full.gb" }, @@ -73825,7 +93059,10 @@ "plasmid_name": "pAG304GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14327", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -73837,7 +93074,10 @@ "plasmid_name": "pAC1817_pCR8-gSMN2-EX", "sequence-type": "addgene-full", "addgene_id": "118651", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118651.addgene-full.gb" }, @@ -73846,7 +93086,10 @@ "plasmid_name": "TFORF3138", "sequence-type": "addgene-full", "addgene_id": "144614", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144614.addgene-full.gb" }, @@ -73855,7 +93098,10 @@ "plasmid_name": "pDONR223_CNBD1_p.Y200F", "sequence-type": "addgene-full", "addgene_id": "81420", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -73867,7 +93113,10 @@ "plasmid_name": "pHPdesteGFP", "sequence-type": "depositor-full", "addgene_id": "24566", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.20637", + "https://www.ncbi.nlm.nih.gov/pubmed/20506180" + ], "kit": null, "file": "data/addgene_plasmids/24566.depositor-full.gb" }, @@ -73876,7 +93125,10 @@ "plasmid_name": "KB601: pMAGIC (L5-L4) hU6::SaCas9 gRNA scaffold; EF1a promoter", "sequence-type": "addgene-full", "addgene_id": "121819", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121819.addgene-full.gb" }, @@ -73885,7 +93137,10 @@ "plasmid_name": "IO301: pMVP (R4-R3) eYFP", "sequence-type": "addgene-full", "addgene_id": "121736", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121736.addgene-full.gb" }, @@ -73894,7 +93149,10 @@ "plasmid_name": "pDEST/N1-hBIN1-GFP", "sequence-type": "addgene-full", "addgene_id": "27305", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.1000312", + "https://www.ncbi.nlm.nih.gov/pubmed/20169111" + ], "kit": null, "file": "data/addgene_plasmids/27305.addgene-full.gb" }, @@ -73903,7 +93161,6 @@ "plasmid_name": "pGEX6P1-DEST-Strep2", "sequence-type": "addgene-full", "addgene_id": "119753", - "references": [], "kit": null, "file": "data/addgene_plasmids/119753.addgene-full.gb" }, @@ -73912,7 +93169,10 @@ "plasmid_name": "pDONR223_ABCB9_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82946", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82946.addgene-full.gb" }, @@ -73921,7 +93181,6 @@ "plasmid_name": "p663-UBC-2xV5-TurboID-NES-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158162", - "references": [], "kit": null, "file": "data/addgene_plasmids/158162.addgene-full.gb" }, @@ -73930,7 +93189,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-138-2", "sequence-type": "depositor-full", "addgene_id": "46677", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46677.depositor-full.gb" }, @@ -73939,7 +93201,10 @@ "plasmid_name": "pENTR223.1_mmDdx58 (closed)", "sequence-type": "addgene-full", "addgene_id": "160107", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160107.addgene-full.gb" }, @@ -73948,7 +93213,6 @@ "plasmid_name": "pFRT-TODestGFP_HuD", "sequence-type": "depositor-full", "addgene_id": "65763", - "references": [], "kit": null, "file": "data/addgene_plasmids/65763.depositor-full.gb" }, @@ -73957,7 +93221,10 @@ "plasmid_name": "TFORF3290", "sequence-type": "addgene-full", "addgene_id": "144766", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144766.addgene-full.gb" }, @@ -73966,7 +93233,10 @@ "plasmid_name": "actc1b-mKate2-rab42a", "sequence-type": "addgene-full", "addgene_id": "109642", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109642.addgene-full.gb" }, @@ -73975,7 +93245,10 @@ "plasmid_name": "pDONR221_SLC25A33", "sequence-type": "addgene-full", "addgene_id": "131993", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131993.addgene-full.gb" }, @@ -73984,7 +93257,10 @@ "plasmid_name": "pLVX-CMV-Flag-PolB(K244A/T304I)-Puro", "sequence-type": "addgene-full", "addgene_id": "177144", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkz293", + "https://www.ncbi.nlm.nih.gov/pubmed/31287140" + ], "kit": null, "file": "data/addgene_plasmids/177144.addgene-full.gb" }, @@ -73993,7 +93269,10 @@ "plasmid_name": "pDONR221-SLC22A15_STOP", "sequence-type": "addgene-full", "addgene_id": "161177", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161177.addgene-full.gb" }, @@ -74002,7 +93281,10 @@ "plasmid_name": "pDONR223_THEMIS_p.D240N", "sequence-type": "addgene-full", "addgene_id": "81552", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -74014,7 +93296,10 @@ "plasmid_name": "pDONR221-SLC37A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161297", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161297.addgene-full.gb" }, @@ -74023,7 +93308,9 @@ "plasmid_name": "pLentiN MmuPV1 E6 R130A", "sequence-type": "addgene-full", "addgene_id": "87679", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28107544" + ], "kit": null, "file": "data/addgene_plasmids/87679.addgene-full.gb" }, @@ -74032,7 +93319,10 @@ "plasmid_name": "TFORF3010", "sequence-type": "addgene-full", "addgene_id": "144486", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144486.addgene-full.gb" }, @@ -74041,7 +93331,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mScarlet-I-RfA", "sequence-type": "addgene-full", "addgene_id": "186383", - "references": [], "kit": null, "file": "data/addgene_plasmids/186383.addgene-full.gb" }, @@ -74050,7 +93339,9 @@ "plasmid_name": "p5E-ESyn1", "sequence-type": "addgene-full", "addgene_id": "80804", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80804.addgene-full.gb" }, @@ -74059,7 +93350,10 @@ "plasmid_name": "p3E-CaaX(tH)", "sequence-type": "addgene-full", "addgene_id": "109539", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109539.addgene-full.gb" }, @@ -74068,7 +93362,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-Envelope", "sequence-type": "depositor-full", "addgene_id": "168879", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168879.depositor-full.gb" }, @@ -74077,7 +93374,6 @@ "plasmid_name": "pCFJ352", "sequence-type": "depositor-full", "addgene_id": "30539", - "references": [], "kit": null, "file": "data/addgene_plasmids/30539.depositor-full.gb" }, @@ -74086,7 +93382,10 @@ "plasmid_name": "pDONR223_STAG2_p.E134D", "sequence-type": "addgene-full", "addgene_id": "81629", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -74098,7 +93397,10 @@ "plasmid_name": "IQGAP1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98346", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98346.addgene-full.gb" }, @@ -74107,7 +93409,10 @@ "plasmid_name": "pDONR223_RBM10_p.Y580F", "sequence-type": "addgene-full", "addgene_id": "82834", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82834.addgene-full.gb" }, @@ -74116,7 +93421,10 @@ "plasmid_name": "1208 p3e-long etv2 3\u2019UTR", "sequence-type": "depositor-full", "addgene_id": "49010", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49010.depositor-full.gb" }, @@ -74125,7 +93433,10 @@ "plasmid_name": "pDONR221-ZNF579_isoform2", "sequence-type": "depositor-full", "addgene_id": "101569", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101569.depositor-full.gb" }, @@ -74134,7 +93445,10 @@ "plasmid_name": "pCK081 desmaMCS:minpromCerulean,exorh:mCherry", "sequence-type": "addgene-full", "addgene_id": "200014", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/200014.addgene-full.gb" }, @@ -74143,7 +93457,10 @@ "plasmid_name": "pDONR223_FBXW7_p.P620R", "sequence-type": "addgene-full", "addgene_id": "82780", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82780.addgene-full.gb" }, @@ -74152,7 +93469,10 @@ "plasmid_name": "pDONR221_SLC12A2", "sequence-type": "addgene-full", "addgene_id": "131908", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131908.addgene-full.gb" }, @@ -74161,7 +93481,10 @@ "plasmid_name": "TFORF3373", "sequence-type": "addgene-full", "addgene_id": "144849", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144849.addgene-full.gb" }, @@ -74170,7 +93493,10 @@ "plasmid_name": "pCM1.35", "sequence-type": "depositor-full", "addgene_id": "17248", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/17248.depositor-full.gb" }, @@ -74179,7 +93505,9 @@ "plasmid_name": "pPB-cT3G-cERP2-ESX1", "sequence-type": "addgene-full", "addgene_id": "222563", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222563.addgene-full.gb" }, @@ -74188,7 +93516,10 @@ "plasmid_name": "pWPI-TFDP1", "sequence-type": "addgene-full", "addgene_id": "114299", - "references": [], + "references": [ + "https://doi.org/10.4161/cc.25834", + "https://www.ncbi.nlm.nih.gov/pubmed/23907129" + ], "kit": null, "file": "data/addgene_plasmids/114299.addgene-full.gb" }, @@ -74197,7 +93528,10 @@ "plasmid_name": "pDONR223_ISX_WT", "sequence-type": "addgene-full", "addgene_id": "81849", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -74209,7 +93543,10 @@ "plasmid_name": "pHAGE-BRAF-G466A", "sequence-type": "addgene-full", "addgene_id": "116149", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116149.addgene-full.gb" }, @@ -74218,7 +93555,10 @@ "plasmid_name": "pENTR221 UBR5 \u2206UBR", "sequence-type": "depositor-full", "addgene_id": "81063", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "file": "data/addgene_plasmids/81063.depositor-full.gb" }, @@ -74227,7 +93567,10 @@ "plasmid_name": "908I", "sequence-type": "addgene-full", "addgene_id": "160241", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160241.addgene-full.gb" }, @@ -74236,7 +93579,10 @@ "plasmid_name": "pTone-gata2aECE-nsGFP", "sequence-type": "addgene-full", "addgene_id": "132975", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132975.addgene-full.gb" }, @@ -74245,7 +93591,10 @@ "plasmid_name": "TFORF3153", "sequence-type": "addgene-full", "addgene_id": "144629", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144629.addgene-full.gb" }, @@ -74254,7 +93603,10 @@ "plasmid_name": "IF311: pMAGIC (R4-R3) NLS-Sa dCas9-NLS-LSD1", "sequence-type": "addgene-full", "addgene_id": "121824", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121824.addgene-full.gb" }, @@ -74263,7 +93615,10 @@ "plasmid_name": "pDONR221-SLC10A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161038", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161038.addgene-full.gb" }, @@ -74272,7 +93627,6 @@ "plasmid_name": "R777-E286 Hs.ROCK2-nostop", "sequence-type": "depositor-full", "addgene_id": "70570", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -74284,7 +93638,9 @@ "plasmid_name": "p2K7-bsd-UBI-tagRFP-KDEL", "sequence-type": "addgene-full", "addgene_id": "114179", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29176619" + ], "kit": null, "file": "data/addgene_plasmids/114179.addgene-full.gb" }, @@ -74293,7 +93649,10 @@ "plasmid_name": "KK601: pMVP (L3-L2) ecDHFR DD + polyA", "sequence-type": "addgene-full", "addgene_id": "121790", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121790.addgene-full.gb" }, @@ -74302,7 +93661,10 @@ "plasmid_name": "pEntry_MERS-CoV-Spike", "sequence-type": "depositor-full", "addgene_id": "168837", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168837.depositor-full.gb" }, @@ -74311,7 +93673,10 @@ "plasmid_name": "pNX32-Dest", "sequence-type": "addgene-full", "addgene_id": "105083", - "references": [], + "references": [ + "https://doi.org/10.1002/0471142301.ns0527s41", + "https://www.ncbi.nlm.nih.gov/pubmed/18428659" + ], "kit": null, "file": "data/addgene_plasmids/105083.addgene-full.gb" }, @@ -74320,7 +93685,10 @@ "plasmid_name": "pDONR223_ELF1_p.P32S", "sequence-type": "addgene-full", "addgene_id": "81486", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -74332,7 +93700,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF3b_nostop", "sequence-type": "addgene-full", "addgene_id": "168534", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168534.addgene-full.gb" }, @@ -74341,7 +93712,10 @@ "plasmid_name": "pHAGE-EGFR-A702S", "sequence-type": "addgene-full", "addgene_id": "116232", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116232.addgene-full.gb" }, @@ -74350,7 +93724,10 @@ "plasmid_name": "TFORF3430", "sequence-type": "addgene-full", "addgene_id": "144906", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144906.addgene-full.gb" }, @@ -74359,7 +93736,9 @@ "plasmid_name": "pDONR221-SMPDL3B", "sequence-type": "addgene-full", "addgene_id": "166211", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166211.addgene-full.gb" }, @@ -74368,7 +93747,10 @@ "plasmid_name": "pPV-EF1a-2xNLS-Cse2-Cas6-Cas3-iPA", "sequence-type": "addgene-full", "addgene_id": "134925", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-13226-x", + "https://www.ncbi.nlm.nih.gov/pubmed/31811138" + ], "kit": null, "file": "data/addgene_plasmids/134925.addgene-full.gb" }, @@ -74377,7 +93759,10 @@ "plasmid_name": "TFORF3076", "sequence-type": "addgene-full", "addgene_id": "144552", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144552.addgene-full.gb" }, @@ -74386,7 +93771,10 @@ "plasmid_name": "pMMK ENTR 2 hU6 ACTB sgRNA", "sequence-type": "addgene-full", "addgene_id": "206270", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206270.addgene-full.gb" }, @@ -74395,7 +93783,10 @@ "plasmid_name": "RCASBP-Y DV", "sequence-type": "addgene-full", "addgene_id": "11478", - "references": [], + "references": [ + "https://doi.org/10.1093/dnares/8.5.221", + "https://www.ncbi.nlm.nih.gov/pubmed/11759842" + ], "kit": null, "file": "data/addgene_plasmids/11478.addgene-full.gb" }, @@ -74404,7 +93795,10 @@ "plasmid_name": "pDONR223_SERPINB4_WT", "sequence-type": "addgene-full", "addgene_id": "81766", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -74428,7 +93822,10 @@ "plasmid_name": "pDONR221-SLC39A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161343", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161343.addgene-full.gb" }, @@ -74437,7 +93834,10 @@ "plasmid_name": "pcDNA5FRT/TO-Strep/HA-UBE2J1", "sequence-type": "addgene-full", "addgene_id": "124669", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "file": "data/addgene_plasmids/124669.addgene-full.gb" }, @@ -74446,7 +93846,9 @@ "plasmid_name": "p3E EFS-rtTA/rtTA3 (JDW 1214)", "sequence-type": "addgene-full", "addgene_id": "224533", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224533.addgene-full.gb" }, @@ -74455,7 +93857,6 @@ "plasmid_name": "pTol2-ziUAS:GPHN.FingR-mCherry-ZFI (IL2RGTC)-KRAB(A)", "sequence-type": "addgene-full", "addgene_id": "72639", - "references": [], "kit": null, "file": "data/addgene_plasmids/72639.addgene-full.gb" }, @@ -74464,7 +93865,6 @@ "plasmid_name": "Hs.NRAS G12V", "sequence-type": "depositor-full", "addgene_id": "83174", - "references": [], "kit": null, "file": "data/addgene_plasmids/83174.depositor-full.gb" }, @@ -74473,7 +93873,10 @@ "plasmid_name": "pcDNA3-FLAG-CRBN-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107380", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107380.addgene-full.gb" }, @@ -74482,7 +93885,10 @@ "plasmid_name": "p3E-rab26-DN", "sequence-type": "addgene-full", "addgene_id": "109745", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109745.addgene-full.gb" }, @@ -74491,7 +93897,10 @@ "plasmid_name": "TFORF3185", "sequence-type": "addgene-full", "addgene_id": "144661", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144661.addgene-full.gb" }, @@ -74500,7 +93909,10 @@ "plasmid_name": "pDONR221_MFSD9", "sequence-type": "addgene-full", "addgene_id": "131894", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131894.addgene-full.gb" }, @@ -74509,7 +93921,10 @@ "plasmid_name": "pDEST26 Ago2", "sequence-type": "depositor-full", "addgene_id": "59904", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2013.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/23603119" + ], "kit": null, "file": "data/addgene_plasmids/59904.depositor-full.gb" }, @@ -74518,7 +93933,10 @@ "plasmid_name": "pDONR223_IDH2_p.A47V", "sequence-type": "addgene-full", "addgene_id": "81455", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -74530,7 +93948,10 @@ "plasmid_name": "pLX-EF1a_mCherry", "sequence-type": "addgene-full", "addgene_id": "221482", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221482.addgene-full.gb" }, @@ -74539,7 +93960,10 @@ "plasmid_name": "pYPQ230-RRVQ", "sequence-type": "addgene-full", "addgene_id": "200188", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02929-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37122009" + ], "kit": null, "file": "data/addgene_plasmids/200188.addgene-full.gb" }, @@ -74548,7 +93972,10 @@ "plasmid_name": "pCFJ1259", "sequence-type": "depositor-full", "addgene_id": "44479", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44479.depositor-full.gb" }, @@ -74557,7 +93984,10 @@ "plasmid_name": "pDONR221-FLVCR2_STOP", "sequence-type": "addgene-full", "addgene_id": "161070", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161070.addgene-full.gb" }, @@ -74566,7 +93996,10 @@ "plasmid_name": "pDONR223_PNKP_WT", "sequence-type": "addgene-full", "addgene_id": "81801", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -74578,7 +94011,10 @@ "plasmid_name": "pCM5.50", "sequence-type": "depositor-full", "addgene_id": "19383", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19383.depositor-full.gb" }, @@ -74587,7 +94023,10 @@ "plasmid_name": "pDONR221-SLCO1C1_STOP", "sequence-type": "addgene-full", "addgene_id": "161390", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161390.addgene-full.gb" }, @@ -74596,7 +94035,10 @@ "plasmid_name": "pLenti-PGK-EGFP-ALDH1A2-Neo", "sequence-type": "addgene-full", "addgene_id": "189743", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "file": "data/addgene_plasmids/189743.addgene-full.gb" }, @@ -74605,7 +94047,10 @@ "plasmid_name": "TFORF3105", "sequence-type": "addgene-full", "addgene_id": "144581", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144581.addgene-full.gb" }, @@ -74614,7 +94059,6 @@ "plasmid_name": "pmrROSA-DEST", "sequence-type": "addgene-full", "addgene_id": "86953", - "references": [], "kit": null, "file": "data/addgene_plasmids/86953.addgene-full.gb" }, @@ -74623,7 +94067,6 @@ "plasmid_name": "pLenti UBC ERFlux (Bip-HaloTag7-mGFP-KDEL-STOP)", "sequence-type": "addgene-full", "addgene_id": "215012", - "references": [], "kit": null, "file": "data/addgene_plasmids/215012.addgene-full.gb" }, @@ -74632,7 +94075,10 @@ "plasmid_name": "SGyA", "sequence-type": "addgene-full", "addgene_id": "160292", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-27333-1", + "https://www.ncbi.nlm.nih.gov/pubmed/34893590" + ], "kit": null, "file": "data/addgene_plasmids/160292.addgene-full.gb" }, @@ -74641,7 +94087,10 @@ "plasmid_name": "pMuLE ENTR SV40 eGFP L5-L2", "sequence-type": "depositor-full", "addgene_id": "62144", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62144.depositor-full.gb" }, @@ -74650,7 +94099,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp13", "sequence-type": "addgene-full", "addgene_id": "168928", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168928.addgene-full.gb" }, @@ -74659,7 +94111,6 @@ "plasmid_name": "R777-E129 Hs.MDM2", "sequence-type": "depositor-full", "addgene_id": "70413", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -74671,7 +94122,10 @@ "plasmid_name": "A1-LCD-10R", "sequence-type": "addgene-full", "addgene_id": "178664", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178664.addgene-full.gb" }, @@ -74680,7 +94134,10 @@ "plasmid_name": "pCSDest2", "sequence-type": "depositor-full", "addgene_id": "22424", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/22424.depositor-full.gb" }, @@ -74689,7 +94146,10 @@ "plasmid_name": "pENTR-SLC66A2_STOP", "sequence-type": "addgene-full", "addgene_id": "221419", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221419.addgene-full.gb" }, @@ -74698,7 +94158,10 @@ "plasmid_name": "KJ201: pMVP (R4-R3) osTir1 open", "sequence-type": "addgene-full", "addgene_id": "121743", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121743.addgene-full.gb" }, @@ -74707,7 +94170,10 @@ "plasmid_name": "pENTR1A-3xFlag-S242R-MEFV", "sequence-type": "addgene-full", "addgene_id": "167020", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-2449-4_12", + "https://www.ncbi.nlm.nih.gov/pubmed/35759198" + ], "kit": null, "file": "data/addgene_plasmids/167020.addgene-full.gb" }, @@ -74716,7 +94182,10 @@ "plasmid_name": "pDONR223_HAT1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82933", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82933.addgene-full.gb" }, @@ -74725,7 +94194,6 @@ "plasmid_name": "R777-E105 Hs.INSR", "sequence-type": "depositor-full", "addgene_id": "70389", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -74737,7 +94205,9 @@ "plasmid_name": "pDRFLIP43", "sequence-type": "depositor-full", "addgene_id": "65519", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65519.depositor-full.gb" }, @@ -74746,7 +94216,10 @@ "plasmid_name": "pDONR221 CARD8 Ub-S297", "sequence-type": "addgene-full", "addgene_id": "169965", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169965.addgene-full.gb" }, @@ -74755,7 +94228,10 @@ "plasmid_name": "pSLIK TT 3xFLAG LacZ hygro", "sequence-type": "addgene-full", "addgene_id": "98395", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98395.addgene-full.gb" }, @@ -74764,7 +94240,9 @@ "plasmid_name": "pMpGWB120", "sequence-type": "depositor-full", "addgene_id": "68574", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68574.depositor-full.gb" }, @@ -74773,7 +94251,10 @@ "plasmid_name": "pDONR-221-P3-P5", "sequence-type": "addgene-full", "addgene_id": "186350", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186350.addgene-full.gb" }, @@ -74782,7 +94263,10 @@ "plasmid_name": "Active Wnt7B-V5", "sequence-type": "depositor-full", "addgene_id": "43817", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43817.depositor-full.gb" }, @@ -74791,7 +94275,10 @@ "plasmid_name": "JDW 823 (pDONR221-V5-mScarlet-I-hsKRAS4A-G12V)", "sequence-type": "addgene-full", "addgene_id": "156406", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156406.addgene-full.gb" }, @@ -74800,7 +94287,10 @@ "plasmid_name": "pLenti-CMVtight-HNF1A-FLAG-Hygro", "sequence-type": "addgene-full", "addgene_id": "183232", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-022-00996-8", + "https://www.ncbi.nlm.nih.gov/pubmed/36202974" + ], "kit": null, "file": "data/addgene_plasmids/183232.addgene-full.gb" }, @@ -74809,7 +94299,10 @@ "plasmid_name": "pUC57-CmYLCV", "sequence-type": "addgene-full", "addgene_id": "205245", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-023-02990-1", + "https://www.ncbi.nlm.nih.gov/pubmed/37386475" + ], "kit": null, "file": "data/addgene_plasmids/205245.addgene-full.gb" }, @@ -74818,7 +94311,10 @@ "plasmid_name": "IG703: pMVP (L1-R5) TRE promoter", "sequence-type": "addgene-full", "addgene_id": "121697", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121697.addgene-full.gb" }, @@ -74827,7 +94323,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 1-13 KR", "sequence-type": "addgene-full", "addgene_id": "129299", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129299.addgene-full.gb" }, @@ -74836,7 +94335,10 @@ "plasmid_name": "pDONR223_ZNF597_p.V21L", "sequence-type": "addgene-full", "addgene_id": "82753", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82753.addgene-full.gb" }, @@ -74845,7 +94347,10 @@ "plasmid_name": "MLKG1delKASH", "sequence-type": "addgene-full", "addgene_id": "130842", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130842.addgene-full.gb" }, @@ -74854,7 +94359,10 @@ "plasmid_name": "pGAN147", "sequence-type": "addgene-full", "addgene_id": "129202", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/29056345" + ], "kit": null, "file": "data/addgene_plasmids/129202.addgene-full.gb" }, @@ -74863,7 +94371,10 @@ "plasmid_name": "pDONR223_PPP2R1A_p.R258H", "sequence-type": "addgene-full", "addgene_id": "81581", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -74875,7 +94386,10 @@ "plasmid_name": "pME-nEGFP", "sequence-type": "addgene-full", "addgene_id": "138363", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138363.addgene-full.gb" }, @@ -74884,7 +94398,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep63", "sequence-type": "addgene-full", "addgene_id": "136812", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136812.addgene-full.gb" }, @@ -74893,7 +94410,10 @@ "plasmid_name": "MiniCoopR 2xU6:gRNA, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118844", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118844.addgene-full.gb" }, @@ -74902,7 +94422,10 @@ "plasmid_name": "pHAGE-ERBB2-I767M", "sequence-type": "addgene-full", "addgene_id": "116335", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116335.addgene-full.gb" }, @@ -74911,7 +94434,10 @@ "plasmid_name": "TFORF3325", "sequence-type": "addgene-full", "addgene_id": "144801", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144801.addgene-full.gb" }, @@ -74920,7 +94446,10 @@ "plasmid_name": "pcDNA3.2/Envelope", "sequence-type": "addgene-full", "addgene_id": "120821", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120821.addgene-full.gb" }, @@ -74929,7 +94458,10 @@ "plasmid_name": "p3E-rab33a", "sequence-type": "addgene-full", "addgene_id": "109691", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109691.addgene-full.gb" }, @@ -74938,7 +94470,10 @@ "plasmid_name": "pDONR221_MFSD12", "sequence-type": "addgene-full", "addgene_id": "131940", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131940.addgene-full.gb" }, @@ -74947,7 +94482,10 @@ "plasmid_name": "p3E-Dnm2a", "sequence-type": "addgene-full", "addgene_id": "109571", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109571.addgene-full.gb" }, @@ -74956,7 +94494,10 @@ "plasmid_name": "TFORF2979", "sequence-type": "addgene-full", "addgene_id": "144455", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144455.addgene-full.gb" }, @@ -74965,7 +94506,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp4", "sequence-type": "addgene-full", "addgene_id": "168867", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168867.addgene-full.gb" }, @@ -74974,7 +94518,6 @@ "plasmid_name": "pCWXPG-UBI-PDX1:VP16", "sequence-type": "addgene-full", "addgene_id": "114305", - "references": [], "kit": null, "file": "data/addgene_plasmids/114305.addgene-full.gb" }, @@ -74983,7 +94526,10 @@ "plasmid_name": "pCMB-PMr", "sequence-type": "depositor-full", "addgene_id": "61181", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61181.depositor-full.gb" }, @@ -74992,7 +94538,10 @@ "plasmid_name": "pDONR223_VHL_p.E186K", "sequence-type": "addgene-full", "addgene_id": "81661", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -75004,7 +94553,10 @@ "plasmid_name": "pLenti-PGK-Neo-PIP-NLS-mVenus", "sequence-type": "addgene-full", "addgene_id": "118619", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "file": "data/addgene_plasmids/118619.addgene-full.gb" }, @@ -75013,7 +94565,10 @@ "plasmid_name": "pGL3-RpS12-Gateway", "sequence-type": "depositor-full", "addgene_id": "71508", - "references": [], + "references": [ + "https://doi.org/10.1038/nature13994", + "https://www.ncbi.nlm.nih.gov/pubmed/25517091" + ], "kit": null, "file": "data/addgene_plasmids/71508.depositor-full.gb" }, @@ -75022,7 +94577,10 @@ "plasmid_name": "RBM22", "sequence-type": "addgene-full", "addgene_id": "155889", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155889.addgene-full.gb" }, @@ -75031,7 +94589,6 @@ "plasmid_name": "pENTRY4_ CUL3", "sequence-type": "addgene-full", "addgene_id": "126903", - "references": [], "kit": null, "file": "data/addgene_plasmids/126903.addgene-full.gb" }, @@ -75040,7 +94597,10 @@ "plasmid_name": "JK104: pMVP-DEST", "sequence-type": "addgene-full", "addgene_id": "121851", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121851.addgene-full.gb" }, @@ -75049,7 +94609,10 @@ "plasmid_name": "pDONR223_RNH1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82995", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82995.addgene-full.gb" }, @@ -75058,7 +94621,10 @@ "plasmid_name": "pDONR223_GALNT14_p.V534F", "sequence-type": "addgene-full", "addgene_id": "81468", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -75070,7 +94636,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-5", "sequence-type": "depositor-full", "addgene_id": "46714", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46714.depositor-full.gb" }, @@ -75079,7 +94648,10 @@ "plasmid_name": "pMartini Gate C R1-R2", "sequence-type": "depositor-full", "addgene_id": "36435", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "file": "data/addgene_plasmids/36435.depositor-full.gb" }, @@ -75088,7 +94660,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a Q", "sequence-type": "addgene-full", "addgene_id": "89386", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89386.addgene-full.gb" }, @@ -75097,7 +94672,10 @@ "plasmid_name": "pFL-EGFP-3xFlag-Fml1", "sequence-type": "addgene-full", "addgene_id": "193058", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111749", + "https://www.ncbi.nlm.nih.gov/pubmed/36476850" + ], "kit": null, "file": "data/addgene_plasmids/193058.addgene-full.gb" }, @@ -75106,7 +94684,10 @@ "plasmid_name": "pBKWH-Lam", "sequence-type": "addgene-full", "addgene_id": "133899", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/133899.addgene-full.gb" }, @@ -75115,7 +94696,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 N", "sequence-type": "addgene-full", "addgene_id": "149330", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149330.addgene-full.gb" }, @@ -75124,7 +94708,10 @@ "plasmid_name": "LOC5570885 Cardioacceleratory peptide receptor", "sequence-type": "addgene-full", "addgene_id": "115375", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115375.addgene-full.gb" }, @@ -75133,7 +94720,10 @@ "plasmid_name": "907H1", "sequence-type": "addgene-full", "addgene_id": "160234", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160234.addgene-full.gb" }, @@ -75142,7 +94732,10 @@ "plasmid_name": "actc1b-mKate2-SERCA1", "sequence-type": "addgene-full", "addgene_id": "109498", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109498.addgene-full.gb" }, @@ -75151,7 +94744,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp6", "sequence-type": "addgene-full", "addgene_id": "168915", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168915.addgene-full.gb" }, @@ -75160,7 +94756,10 @@ "plasmid_name": "TFORF3051", "sequence-type": "addgene-full", "addgene_id": "144527", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144527.addgene-full.gb" }, @@ -75169,7 +94768,9 @@ "plasmid_name": "pDONR221 msNLRP3 (STOP)", "sequence-type": "addgene-full", "addgene_id": "218638", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218638.addgene-full.gb" }, @@ -75178,7 +94779,9 @@ "plasmid_name": "pMpGWB232", "sequence-type": "depositor-full", "addgene_id": "68623", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68623.depositor-full.gb" }, @@ -75187,7 +94790,10 @@ "plasmid_name": "pME-AKT-PH", "sequence-type": "depositor-full", "addgene_id": "67674", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67674.depositor-full.gb" }, @@ -75196,7 +94802,10 @@ "plasmid_name": "pAM104", "sequence-type": "addgene-full", "addgene_id": "226696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226696.addgene-full.gb" }, @@ -75205,7 +94814,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.R535Q", "sequence-type": "addgene-full", "addgene_id": "81713", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -75217,7 +94829,10 @@ "plasmid_name": "pCWXPGR-pTF-dnTCF4", "sequence-type": "addgene-full", "addgene_id": "114277", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "file": "data/addgene_plasmids/114277.addgene-full.gb" }, @@ -75226,7 +94841,10 @@ "plasmid_name": "A1-LCD-12F+12Y", "sequence-type": "addgene-full", "addgene_id": "178659", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178659.addgene-full.gb" }, @@ -75235,7 +94853,10 @@ "plasmid_name": "pSLIK Zeo p53DD", "sequence-type": "addgene-full", "addgene_id": "136534", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136534.addgene-full.gb" }, @@ -75244,7 +94865,10 @@ "plasmid_name": "pAG416GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14244", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -75256,7 +94880,10 @@ "plasmid_name": "pDONR221-SLC5A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161336", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161336.addgene-full.gb" }, @@ -75265,7 +94892,6 @@ "plasmid_name": "pENTR-ABCB1_STOP", "sequence-type": "addgene-full", "addgene_id": "221424", - "references": [], "kit": null, "file": "data/addgene_plasmids/221424.addgene-full.gb" }, @@ -75274,7 +94900,10 @@ "plasmid_name": "pDONR 221-PHL2 (NON-STOP)", "sequence-type": "addgene-full", "addgene_id": "118682", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118682.addgene-full.gb" }, @@ -75283,7 +94912,10 @@ "plasmid_name": "p8141 MSCV-P C-FlagHA 18E7 D10K", "sequence-type": "addgene-full", "addgene_id": "163306", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "file": "data/addgene_plasmids/163306.addgene-full.gb" }, @@ -75292,7 +94924,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF8b_nostop", "sequence-type": "addgene-full", "addgene_id": "168541", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168541.addgene-full.gb" }, @@ -75301,7 +94936,9 @@ "plasmid_name": "pDONR221-MANF", "sequence-type": "addgene-full", "addgene_id": "166184", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166184.addgene-full.gb" }, @@ -75310,7 +94947,10 @@ "plasmid_name": "TFORF3497", "sequence-type": "addgene-full", "addgene_id": "144973", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144973.addgene-full.gb" }, @@ -75319,7 +94959,10 @@ "plasmid_name": "pLenti-CreLite", "sequence-type": "addgene-full", "addgene_id": "131786", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.232", + "https://www.ncbi.nlm.nih.gov/pubmed/32745301" + ], "kit": null, "file": "data/addgene_plasmids/131786.addgene-full.gb" }, @@ -75328,7 +94971,10 @@ "plasmid_name": "pHAGE-EGFR-E804G", "sequence-type": "addgene-full", "addgene_id": "116247", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116247.addgene-full.gb" }, @@ -75337,7 +94983,9 @@ "plasmid_name": "pME-myr-mTagBFP2-Flag (JDW 1183)", "sequence-type": "addgene-full", "addgene_id": "224492", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224492.addgene-full.gb" }, @@ -75346,7 +94994,10 @@ "plasmid_name": "pDONR223_FBXW7_WT", "sequence-type": "addgene-full", "addgene_id": "81973", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81973.addgene-full.gb" }, @@ -75355,7 +95006,10 @@ "plasmid_name": "pGWT35S-AtOEP7(1-50aa)-VN154", "sequence-type": "addgene-full", "addgene_id": "194045", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.2c00367", + "https://www.ncbi.nlm.nih.gov/pubmed/36178266" + ], "kit": null, "file": "data/addgene_plasmids/194045.addgene-full.gb" }, @@ -75364,7 +95018,6 @@ "plasmid_name": "pAM-35s-Slac1-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102390", - "references": [], "kit": null, "file": "data/addgene_plasmids/102390.addgene-full.gb" }, @@ -75373,7 +95026,10 @@ "plasmid_name": "TFORF3237", "sequence-type": "addgene-full", "addgene_id": "144713", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144713.addgene-full.gb" }, @@ -75382,7 +95038,10 @@ "plasmid_name": "actc1b-mKate2-rab3c", "sequence-type": "addgene-full", "addgene_id": "109637", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109637.addgene-full.gb" }, @@ -75391,7 +95050,10 @@ "plasmid_name": "pHAGE-FGFR4-P788L", "sequence-type": "addgene-full", "addgene_id": "116393", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116393.addgene-full.gb" }, @@ -75400,7 +95062,9 @@ "plasmid_name": "p3E-P2A-mKate2 no-pA", "sequence-type": "depositor-full", "addgene_id": "80828", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80828.depositor-full.gb" }, @@ -75409,7 +95073,10 @@ "plasmid_name": "pDONR221-SLC17A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161102", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161102.addgene-full.gb" }, @@ -75418,7 +95085,10 @@ "plasmid_name": "pDONR221-SLC19A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161199", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161199.addgene-full.gb" }, @@ -75427,7 +95097,10 @@ "plasmid_name": "pDONR223_KEAP1_p.R204P", "sequence-type": "addgene-full", "addgene_id": "82841", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82841.addgene-full.gb" }, @@ -75436,7 +95109,10 @@ "plasmid_name": "pLX301-KANK1", "sequence-type": "addgene-full", "addgene_id": "121985", - "references": [], + "references": [ + "https://doi.org/10.1038/srep46392", + "https://www.ncbi.nlm.nih.gov/pubmed/28436992" + ], "kit": null, "file": "data/addgene_plasmids/121985.addgene-full.gb" }, @@ -75445,7 +95121,6 @@ "plasmid_name": "R777-E116 Hs.KRAS-nostop", "sequence-type": "addgene-full", "addgene_id": "70400", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -75457,7 +95132,10 @@ "plasmid_name": "TFORF3312", "sequence-type": "addgene-full", "addgene_id": "144788", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144788.addgene-full.gb" }, @@ -75466,7 +95144,10 @@ "plasmid_name": "pWS-TK6", "sequence-type": "addgene-full", "addgene_id": "20350", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "file": "data/addgene_plasmids/20350.addgene-full.gb" }, @@ -75475,7 +95156,10 @@ "plasmid_name": "pHAGE-EGFR-T354M", "sequence-type": "addgene-full", "addgene_id": "116308", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116308.addgene-full.gb" }, @@ -75484,7 +95168,10 @@ "plasmid_name": "pMLS715", "sequence-type": "addgene-full", "addgene_id": "188887", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "file": "data/addgene_plasmids/188887.addgene-full.gb" }, @@ -75493,7 +95180,10 @@ "plasmid_name": "MAC-TMPRSS2", "sequence-type": "addgene-full", "addgene_id": "158385", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158385.addgene-full.gb" }, @@ -75502,7 +95192,10 @@ "plasmid_name": "FERMT1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98333", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98333.addgene-full.gb" }, @@ -75511,7 +95204,10 @@ "plasmid_name": "pENTR D-TOPO-C3_22", "sequence-type": "depositor-full", "addgene_id": "60267", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60267.depositor-full.gb" }, @@ -75520,7 +95216,10 @@ "plasmid_name": "pDONR221-SLC30A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161279", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161279.addgene-full.gb" }, @@ -75529,7 +95228,10 @@ "plasmid_name": "pDONR221-kcnj21", "sequence-type": "addgene-full", "addgene_id": "173151", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173151.addgene-full.gb" }, @@ -75538,7 +95240,10 @@ "plasmid_name": "pDestTol2-actinb-kcna1a-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164965", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164965.addgene-full.gb" }, @@ -75547,7 +95252,10 @@ "plasmid_name": "pDONR221-SLC30A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161453", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161453.addgene-full.gb" }, @@ -75556,7 +95264,10 @@ "plasmid_name": "p5Eclec14aE1", "sequence-type": "addgene-full", "addgene_id": "90117", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90117.addgene-full.gb" }, @@ -75565,7 +95276,10 @@ "plasmid_name": "pGL4_EGR1p-BC0143-luc2", "sequence-type": "addgene-full", "addgene_id": "214648", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214648.addgene-full.gb" }, @@ -75574,7 +95288,10 @@ "plasmid_name": "pINDUCER-21-RUNX1-P2A-ERG", "sequence-type": "addgene-full", "addgene_id": "97045", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "file": "data/addgene_plasmids/97045.addgene-full.gb" }, @@ -75583,7 +95300,10 @@ "plasmid_name": "pMH-MBP", "sequence-type": "addgene-full", "addgene_id": "101768", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "file": "data/addgene_plasmids/101768.addgene-full.gb" }, @@ -75592,7 +95312,6 @@ "plasmid_name": "MECP2 - A202G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216598", - "references": [], "kit": null, "file": "data/addgene_plasmids/216598.addgene-full.gb" }, @@ -75601,7 +95320,10 @@ "plasmid_name": "pHAGE-PIK3CA-P449_N457delPHGLEDLLN", "sequence-type": "addgene-full", "addgene_id": "116522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116522.addgene-full.gb" }, @@ -75610,7 +95332,10 @@ "plasmid_name": "pCAG CAG Glucagon-ICAM1-3xHA-pre-mGRASP", "sequence-type": "addgene-full", "addgene_id": "153008", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1919528117", + "https://www.ncbi.nlm.nih.gov/pubmed/32424107" + ], "kit": null, "file": "data/addgene_plasmids/153008.addgene-full.gb" }, @@ -75619,7 +95344,10 @@ "plasmid_name": "pDONR223-ZAP70", "sequence-type": "addgene-full", "addgene_id": "23887", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -75631,7 +95359,10 @@ "plasmid_name": "MAC_N_LHX4", "sequence-type": "addgene-full", "addgene_id": "167778", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167778.addgene-full.gb" }, @@ -75640,7 +95371,10 @@ "plasmid_name": "pDONR223_A4GALT_p.A272V", "sequence-type": "addgene-full", "addgene_id": "81396", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -75652,7 +95386,10 @@ "plasmid_name": "pCFJ2438 - [1-2] ENTR - Fluor - ce-mCardinal((PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159862", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159862.addgene-full.gb" }, @@ -75661,7 +95398,10 @@ "plasmid_name": "pGWB440", "sequence-type": "depositor-full", "addgene_id": "74826", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74826.depositor-full.gb" }, @@ -75670,7 +95410,6 @@ "plasmid_name": "pAG426GAL-CV-B3_3C", "sequence-type": "addgene-full", "addgene_id": "203499", - "references": [], "kit": null, "file": "data/addgene_plasmids/203499.addgene-full.gb" }, @@ -75679,7 +95418,10 @@ "plasmid_name": "pDONR221_SLC6A19", "sequence-type": "addgene-full", "addgene_id": "132231", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132231.addgene-full.gb" }, @@ -75688,7 +95430,10 @@ "plasmid_name": "pHAGE-RAF1-R164Q", "sequence-type": "addgene-full", "addgene_id": "116659", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116659.addgene-full.gb" }, @@ -75697,7 +95442,6 @@ "plasmid_name": "R777-E033 Hs.DUSP1", "sequence-type": "depositor-full", "addgene_id": "70317", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -75709,7 +95453,10 @@ "plasmid_name": "pPB-cT3G-cERP2-HOXC9", "sequence-type": "addgene-full", "addgene_id": "192910", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192910.addgene-full.gb" }, @@ -75718,7 +95465,10 @@ "plasmid_name": "AAEL017544 TK R", "sequence-type": "addgene-full", "addgene_id": "115410", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115410.addgene-full.gb" }, @@ -75727,7 +95477,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV PrM", "sequence-type": "addgene-full", "addgene_id": "145340", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145340.addgene-full.gb" }, @@ -75736,7 +95489,10 @@ "plasmid_name": "C417-E06: attB4-polyhedrinp>MBP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162935", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -75748,7 +95504,10 @@ "plasmid_name": "pAC150-KEIMA-RAMP4", "sequence-type": "addgene-full", "addgene_id": "201929", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "file": "data/addgene_plasmids/201929.addgene-full.gb" }, @@ -75757,7 +95516,10 @@ "plasmid_name": "pBoPyV3-S23", "sequence-type": "depositor-full", "addgene_id": "62369", - "references": [], + "references": [ + "https://doi.org/10.1099/vir.0.000033", + "https://www.ncbi.nlm.nih.gov/pubmed/25568187" + ], "kit": null, "file": "data/addgene_plasmids/62369.depositor-full.gb" }, @@ -75766,7 +95528,10 @@ "plasmid_name": "R725-X11-566: His6-MBP-tev-Hs.LGALS3", "sequence-type": "addgene-full", "addgene_id": "159699", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.005669", + "https://www.ncbi.nlm.nih.gov/pubmed/30559287" + ], "kit": null, "file": "data/addgene_plasmids/159699.addgene-full.gb" }, @@ -75775,7 +95540,10 @@ "plasmid_name": "pDONR223_HRAS_p.G12V", "sequence-type": "addgene-full", "addgene_id": "82090", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -75787,7 +95555,6 @@ "plasmid_name": "pg-nucODD-EGFP", "sequence-type": "addgene-full", "addgene_id": "87212", - "references": [], "kit": null, "file": "data/addgene_plasmids/87212.addgene-full.gb" }, @@ -75796,7 +95563,10 @@ "plasmid_name": "p3E NWASP-CA", "sequence-type": "addgene-full", "addgene_id": "105968", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105968.addgene-full.gb" }, @@ -75805,7 +95575,10 @@ "plasmid_name": "R711-X04-566: His6-MBP-tev-Hs.NF1iso2 (1198-1530)", "sequence-type": "addgene-full", "addgene_id": "159579", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.107909", + "https://www.ncbi.nlm.nih.gov/pubmed/32697994" + ], "kit": null, "file": "data/addgene_plasmids/159579.addgene-full.gb" }, @@ -75814,7 +95587,10 @@ "plasmid_name": "pHAGE-TAOK1__PIPOX", "sequence-type": "addgene-full", "addgene_id": "116839", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116839.addgene-full.gb" }, @@ -75823,7 +95599,10 @@ "plasmid_name": "pTol2pA2-ubb:secHsa.ANNEXINV-mVenus, cryaa:RFP", "sequence-type": "addgene-full", "addgene_id": "92388", - "references": [], + "references": [ + "https://doi.org/10.3389/fncel.2015.00321", + "https://www.ncbi.nlm.nih.gov/pubmed/26379496" + ], "kit": null, "file": "data/addgene_plasmids/92388.addgene-full.gb" }, @@ -75832,7 +95611,10 @@ "plasmid_name": "pDONR221_SLC25A34", "sequence-type": "addgene-full", "addgene_id": "132005", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132005.addgene-full.gb" }, @@ -75841,7 +95623,10 @@ "plasmid_name": "pENTR221-JUN", "sequence-type": "addgene-full", "addgene_id": "79512", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79512.addgene-full.gb" }, @@ -75850,7 +95635,10 @@ "plasmid_name": "pCPP5534", "sequence-type": "addgene-full", "addgene_id": "128723", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128723.addgene-full.gb" }, @@ -75859,7 +95647,10 @@ "plasmid_name": "PE_13: Plux_lac_tet_bD", "sequence-type": "addgene-full", "addgene_id": "113594", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113594.addgene-full.gb" }, @@ -75868,7 +95659,10 @@ "plasmid_name": "pAG425GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14370", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -75880,7 +95674,10 @@ "plasmid_name": "pDN0605 (pDEST-DHFR F[1,2] N-term, NatR)", "sequence-type": "addgene-full", "addgene_id": "210487", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210487.addgene-full.gb" }, @@ -75889,7 +95686,10 @@ "plasmid_name": "pGWB526", "sequence-type": "depositor-full", "addgene_id": "74868", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74868.depositor-full.gb" }, @@ -75898,7 +95698,10 @@ "plasmid_name": "pAD-CMV-Caveolin1-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83272", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2013.06.017", + "https://www.ncbi.nlm.nih.gov/pubmed/23850288" + ], "kit": null, "file": "data/addgene_plasmids/83272.addgene-full.gb" }, @@ -75907,7 +95710,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::venus-RfA", "sequence-type": "addgene-full", "addgene_id": "186408", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186408.addgene-full.gb" }, @@ -75916,7 +95722,10 @@ "plasmid_name": "pHAGE-BAI3", "sequence-type": "addgene-full", "addgene_id": "116716", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116716.addgene-full.gb" }, @@ -75925,7 +95734,10 @@ "plasmid_name": "pAcBac1-Mb-sfGFP WT", "sequence-type": "addgene-full", "addgene_id": "197569", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.2c00639", + "https://www.ncbi.nlm.nih.gov/pubmed/36383641" + ], "kit": null, "file": "data/addgene_plasmids/197569.addgene-full.gb" }, @@ -75934,7 +95746,10 @@ "plasmid_name": "pGC247", "sequence-type": "depositor-full", "addgene_id": "19634", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19634.depositor-full.gb" }, @@ -75943,7 +95758,10 @@ "plasmid_name": "pE1c", "sequence-type": "depositor-full", "addgene_id": "17461", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17461.depositor-full.gb" }, @@ -75952,7 +95770,10 @@ "plasmid_name": "pGGEV_-1_FRT_+1_OA-", "sequence-type": "depositor-full", "addgene_id": "49310", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -75964,7 +95785,6 @@ "plasmid_name": "R777-E075 Hs.EXOC5", "sequence-type": "depositor-full", "addgene_id": "70359", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -75976,7 +95796,10 @@ "plasmid_name": "tetO-TCF21", "sequence-type": "addgene-full", "addgene_id": "170706", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170706.addgene-full.gb" }, @@ -75985,7 +95808,10 @@ "plasmid_name": "pENTR4_G3BP1", "sequence-type": "addgene-full", "addgene_id": "127104", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.12.024", + "https://www.ncbi.nlm.nih.gov/pubmed/31981475" + ], "kit": null, "file": "data/addgene_plasmids/127104.addgene-full.gb" }, @@ -75994,7 +95820,6 @@ "plasmid_name": "IDG_TMEM63A_OE_1", "sequence-type": "addgene-full", "addgene_id": "161667", - "references": [], "kit": null, "file": "data/addgene_plasmids/161667.addgene-full.gb" }, @@ -76003,7 +95828,6 @@ "plasmid_name": "pENTR-R2L3-cmER-IRESpuro-pA", "sequence-type": "addgene-full", "addgene_id": "139539", - "references": [], "kit": null, "file": "data/addgene_plasmids/139539.addgene-full.gb" }, @@ -76012,7 +95836,10 @@ "plasmid_name": "pEXP(V5_H2B_APEX2)", "sequence-type": "addgene-full", "addgene_id": "107597", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-018-0220-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30478324" + ], "kit": null, "file": "data/addgene_plasmids/107597.addgene-full.gb" }, @@ -76021,7 +95848,10 @@ "plasmid_name": "pME-QF2w-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155117", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155117.addgene-full.gb" }, @@ -76030,7 +95860,10 @@ "plasmid_name": "pCAG/ATP8A1-HA", "sequence-type": "addgene-full", "addgene_id": "209208", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209208.addgene-full.gb" }, @@ -76039,7 +95872,10 @@ "plasmid_name": "FLAG NC", "sequence-type": "addgene-full", "addgene_id": "214675", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-023-02014-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38168984" + ], "kit": null, "file": "data/addgene_plasmids/214675.addgene-full.gb" }, @@ -76048,7 +95884,10 @@ "plasmid_name": "pDONR223_MAP3K8_WT", "sequence-type": "addgene-full", "addgene_id": "82202", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82202.addgene-full.gb" }, @@ -76057,7 +95896,10 @@ "plasmid_name": "Flag-HA-USP2", "sequence-type": "addgene-full", "addgene_id": "22577", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22577.addgene-full.gb" }, @@ -76066,7 +95908,10 @@ "plasmid_name": "pENTR1A FKBP12F36V-OGT", "sequence-type": "addgene-full", "addgene_id": "154287", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154287.addgene-full.gb" }, @@ -76075,7 +95920,10 @@ "plasmid_name": "pDONR-IAA8", "sequence-type": "depositor-full", "addgene_id": "83873", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83873.depositor-full.gb" }, @@ -76084,7 +95932,10 @@ "plasmid_name": "pDONR221_SLC39A8", "sequence-type": "addgene-full", "addgene_id": "132177", - "references": [], + "references": [ + "https://doi.org/10.1007/s10534-022-00474-6", + "https://www.ncbi.nlm.nih.gov/pubmed/36454509" + ], "kit": null, "file": "data/addgene_plasmids/132177.addgene-full.gb" }, @@ -76093,7 +95944,10 @@ "plasmid_name": "pSBDEST.B", "sequence-type": "addgene-full", "addgene_id": "79460", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79460.addgene-full.gb" }, @@ -76102,7 +95956,9 @@ "plasmid_name": "Shim_CytC_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202646", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "file": "data/addgene_plasmids/202646.addgene-full.gb" }, @@ -76111,7 +95967,10 @@ "plasmid_name": "pDONR221_SV2C", "sequence-type": "addgene-full", "addgene_id": "132297", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132297.addgene-full.gb" }, @@ -76120,7 +95979,9 @@ "plasmid_name": "p3E-FRB(KTF)-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82596", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82596.depositor-full.gb" }, @@ -76129,7 +95990,10 @@ "plasmid_name": "pCFJ66", "sequence-type": "depositor-full", "addgene_id": "24981", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1454", + "https://www.ncbi.nlm.nih.gov/pubmed/20418868" + ], "kit": null, "file": "data/addgene_plasmids/24981.depositor-full.gb" }, @@ -76138,7 +96002,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP5", "sequence-type": "addgene-full", "addgene_id": "169380", - "references": [], "kit": null, "file": "data/addgene_plasmids/169380.addgene-full.gb" }, @@ -76147,7 +96010,10 @@ "plasmid_name": "MAC_N_ELF1", "sequence-type": "addgene-full", "addgene_id": "167745", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167745.addgene-full.gb" }, @@ -76156,7 +96022,10 @@ "plasmid_name": "pXL-CAG-3XAP-NLG1", "sequence-type": "depositor-full", "addgene_id": "43923", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0052823", + "https://www.ncbi.nlm.nih.gov/pubmed/23457442" + ], "kit": null, "file": "data/addgene_plasmids/43923.depositor-full.gb" }, @@ -76165,7 +96034,10 @@ "plasmid_name": "pGWT35S-Citrine", "sequence-type": "addgene-full", "addgene_id": "182581", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "file": "data/addgene_plasmids/182581.addgene-full.gb" }, @@ -76174,7 +96046,10 @@ "plasmid_name": "pDONR223_ELF3_p.A332V", "sequence-type": "addgene-full", "addgene_id": "81330", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -76186,7 +96061,10 @@ "plasmid_name": "pDONR223_RAC1_p.T17N", "sequence-type": "addgene-full", "addgene_id": "82179", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82179.addgene-full.gb" }, @@ -76195,7 +96073,10 @@ "plasmid_name": "pHAGE-PIK3R1-D464N", "sequence-type": "addgene-full", "addgene_id": "116584", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116584.addgene-full.gb" }, @@ -76204,7 +96085,6 @@ "plasmid_name": "R777-E285 Hs.ROCK2", "sequence-type": "depositor-full", "addgene_id": "70569", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -76216,7 +96096,10 @@ "plasmid_name": "pHAGE-RET-A641T", "sequence-type": "addgene-full", "addgene_id": "116664", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116664.addgene-full.gb" }, @@ -76225,7 +96108,10 @@ "plasmid_name": "pGMEH-T38M-750-luxAB-DAS+4", "sequence-type": "depositor-full", "addgene_id": "49520", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "file": "data/addgene_plasmids/49520.depositor-full.gb" }, @@ -76234,7 +96120,10 @@ "plasmid_name": "pRATIO1112", "sequence-type": "addgene-full", "addgene_id": "141066", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141066.addgene-full.gb" }, @@ -76243,7 +96132,10 @@ "plasmid_name": "pCM1.56", "sequence-type": "depositor-full", "addgene_id": "17251", - "references": [], + "references": [ + "https://doi.org/10.1895/wormbook.1.148.1", + "https://www.ncbi.nlm.nih.gov/pubmed/20169625" + ], "kit": null, "file": "data/addgene_plasmids/17251.depositor-full.gb" }, @@ -76252,7 +96144,10 @@ "plasmid_name": "bArr2-V5", "sequence-type": "addgene-full", "addgene_id": "201494", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2023.105107", + "https://www.ncbi.nlm.nih.gov/pubmed/37517699" + ], "kit": null, "file": "data/addgene_plasmids/201494.addgene-full.gb" }, @@ -76261,7 +96156,10 @@ "plasmid_name": "C232-E34: attB2r-iRFP670-attB3", "sequence-type": "addgene-full", "addgene_id": "162908", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -76273,7 +96171,10 @@ "plasmid_name": "pKI-cjPLP1e2-P15L", "sequence-type": "addgene-full", "addgene_id": "129753", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-018-37990-w", + "https://www.ncbi.nlm.nih.gov/pubmed/30728412" + ], "kit": null, "file": "data/addgene_plasmids/129753.addgene-full.gb" }, @@ -76282,7 +96183,10 @@ "plasmid_name": "pDONR223_CSNK1E_WT", "sequence-type": "addgene-full", "addgene_id": "82299", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82299.addgene-full.gb" }, @@ -76291,7 +96195,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MKNK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170594", - "references": [], "kit": null, "file": "data/addgene_plasmids/170594.addgene-full.gb" }, @@ -76300,7 +96203,10 @@ "plasmid_name": "pDONR221 Ub-NLRP1 S1213", "sequence-type": "addgene-full", "addgene_id": "166827", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166827.addgene-full.gb" }, @@ -76309,7 +96215,10 @@ "plasmid_name": "1132 pME-Lin28", "sequence-type": "depositor-full", "addgene_id": "49009", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49009.depositor-full.gb" }, @@ -76318,7 +96227,10 @@ "plasmid_name": "pHAGE-PDGFRA-P577T", "sequence-type": "addgene-full", "addgene_id": "116450", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116450.addgene-full.gb" }, @@ -76327,7 +96239,10 @@ "plasmid_name": "keratin 8 (krt8)-H2B-RFP", "sequence-type": "addgene-full", "addgene_id": "105955", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.08.062", + "https://www.ncbi.nlm.nih.gov/pubmed/26411683" + ], "kit": null, "file": "data/addgene_plasmids/105955.addgene-full.gb" }, @@ -76336,7 +96251,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP5 Cys146Ala", "sequence-type": "addgene-full", "addgene_id": "154028", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154028.addgene-full.gb" }, @@ -76345,7 +96263,10 @@ "plasmid_name": "R989-X12-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) Q61L", "sequence-type": "addgene-full", "addgene_id": "159544", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159544.addgene-full.gb" }, @@ -76354,7 +96275,6 @@ "plasmid_name": "pBabe-EGFP-Hu_Plk1(WT)", "sequence-type": "addgene-full", "addgene_id": "136323", - "references": [], "kit": null, "file": "data/addgene_plasmids/136323.addgene-full.gb" }, @@ -76363,7 +96283,10 @@ "plasmid_name": "pET-DEST42-dre4", "sequence-type": "addgene-full", "addgene_id": "170440", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.05.099", + "https://www.ncbi.nlm.nih.gov/pubmed/31242411" + ], "kit": null, "file": "data/addgene_plasmids/170440.addgene-full.gb" }, @@ -76372,7 +96295,10 @@ "plasmid_name": "pCMU-PDESr", "sequence-type": "depositor-full", "addgene_id": "61206", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61206.depositor-full.gb" }, @@ -76381,7 +96307,10 @@ "plasmid_name": "pYPQ266E", "sequence-type": "addgene-full", "addgene_id": "161521", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-00827-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33398158" + ], "kit": null, "file": "data/addgene_plasmids/161521.addgene-full.gb" }, @@ -76390,7 +96319,6 @@ "plasmid_name": "pLenti Lifeact-mRuby2 PuroR", "sequence-type": "addgene-full", "addgene_id": "84386", - "references": [], "kit": null, "file": "data/addgene_plasmids/84386.addgene-full.gb" }, @@ -76399,7 +96327,10 @@ "plasmid_name": "pDONR221_SLC25A13", "sequence-type": "addgene-full", "addgene_id": "132038", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132038.addgene-full.gb" }, @@ -76408,7 +96339,10 @@ "plasmid_name": "HA-BirA*-pDEST-N-pcDNA5/FRT/TO", "sequence-type": "addgene-full", "addgene_id": "118375", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118375.addgene-full.gb" }, @@ -76417,7 +96351,10 @@ "plasmid_name": "pHAGE-XPO1", "sequence-type": "addgene-full", "addgene_id": "116804", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116804.addgene-full.gb" }, @@ -76426,7 +96363,6 @@ "plasmid_name": "pDONR221-TMPRSS4", "sequence-type": "addgene-full", "addgene_id": "158446", - "references": [], "kit": null, "file": "data/addgene_plasmids/158446.addgene-full.gb" }, @@ -76435,7 +96371,10 @@ "plasmid_name": "THOC4", "sequence-type": "addgene-full", "addgene_id": "156083", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156083.addgene-full.gb" }, @@ -76444,7 +96383,10 @@ "plasmid_name": "pAG303-Gal-GA50", "sequence-type": "depositor-full", "addgene_id": "84907", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "file": "data/addgene_plasmids/84907.depositor-full.gb" }, @@ -76453,7 +96395,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Cas12j2", "sequence-type": "addgene-full", "addgene_id": "173926", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2022.100453", + "https://www.ncbi.nlm.nih.gov/pubmed/36127876" + ], "kit": null, "file": "data/addgene_plasmids/173926.addgene-full.gb" }, @@ -76462,7 +96407,6 @@ "plasmid_name": "R777-E243 Hs.RASGRP1", "sequence-type": "depositor-full", "addgene_id": "70527", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -76474,7 +96418,10 @@ "plasmid_name": "pAG423GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14294", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -76486,7 +96433,6 @@ "plasmid_name": "p667-UBC-CDC42BPB-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198008", - "references": [], "kit": null, "file": "data/addgene_plasmids/198008.addgene-full.gb" }, @@ -76495,7 +96441,10 @@ "plasmid_name": "MAC_C_TR61B", "sequence-type": "addgene-full", "addgene_id": "111679", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111679.addgene-full.gb" }, @@ -76504,7 +96453,9 @@ "plasmid_name": "p3E p2a-tomato", "sequence-type": "addgene-full", "addgene_id": "135211", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "file": "data/addgene_plasmids/135211.addgene-full.gb" }, @@ -76513,7 +96464,10 @@ "plasmid_name": "p5E_unc503", "sequence-type": "addgene-full", "addgene_id": "64020", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.22385", + "https://www.ncbi.nlm.nih.gov/pubmed/23444339" + ], "kit": null, "file": "data/addgene_plasmids/64020.addgene-full.gb" }, @@ -76522,7 +96476,10 @@ "plasmid_name": "pLG320", "sequence-type": "addgene-full", "addgene_id": "124370", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-019-0412-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31792444" + ], "kit": null, "file": "data/addgene_plasmids/124370.addgene-full.gb" }, @@ -76531,7 +96488,10 @@ "plasmid_name": "pRU324", "sequence-type": "addgene-full", "addgene_id": "167691", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167691.addgene-full.gb" }, @@ -76540,7 +96500,10 @@ "plasmid_name": "pWZL Neo Myr Flag GK", "sequence-type": "addgene-full", "addgene_id": "20493", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20493.addgene-full.gb" }, @@ -76549,7 +96512,10 @@ "plasmid_name": "pMx/ATP11A-HA", "sequence-type": "addgene-full", "addgene_id": "209235", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209235.addgene-full.gb" }, @@ -76558,7 +96524,10 @@ "plasmid_name": "pTW088", "sequence-type": "addgene-full", "addgene_id": "115936", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115936.addgene-full.gb" }, @@ -76567,7 +96536,10 @@ "plasmid_name": "pDONR221_SLC10A1", "sequence-type": "addgene-full", "addgene_id": "131907", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131907.addgene-full.gb" }, @@ -76576,7 +96548,6 @@ "plasmid_name": "pCS2+TA", "sequence-type": "depositor-full", "addgene_id": "49338", - "references": [], "kit": null, "file": "data/addgene_plasmids/49338.depositor-full.gb" }, @@ -76585,7 +96556,10 @@ "plasmid_name": "pHAGE-ESR1-Y537C", "sequence-type": "addgene-full", "addgene_id": "116372", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116372.addgene-full.gb" }, @@ -76594,7 +96568,10 @@ "plasmid_name": "TFORF3370", "sequence-type": "addgene-full", "addgene_id": "144846", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144846.addgene-full.gb" }, @@ -76603,7 +96580,10 @@ "plasmid_name": "pEBTetBl-CLIP-Centrin3", "sequence-type": "addgene-full", "addgene_id": "136855", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136855.addgene-full.gb" }, @@ -76612,7 +96592,10 @@ "plasmid_name": "pAG413GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14358", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -76624,7 +96607,6 @@ "plasmid_name": "mSirt1-GFP", "sequence-type": "addgene-full", "addgene_id": "221511", - "references": [], "kit": null, "file": "data/addgene_plasmids/221511.addgene-full.gb" }, @@ -76633,7 +96615,10 @@ "plasmid_name": "LIMD1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98349", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98349.addgene-full.gb" }, @@ -76642,7 +96627,10 @@ "plasmid_name": "pSGE_716_S2-1_GATA-to-DFD", "sequence-type": "depositor-full", "addgene_id": "71173", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71173.depositor-full.gb" }, @@ -76651,7 +96639,10 @@ "plasmid_name": "pDONR223_FAM116A_p.R427H", "sequence-type": "addgene-full", "addgene_id": "81626", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -76663,7 +96654,10 @@ "plasmid_name": "pENTR L1-20XUAS-R5", "sequence-type": "depositor-full", "addgene_id": "32302", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32302.depositor-full.gb" }, @@ -76672,7 +96666,9 @@ "plasmid_name": "p5E-EF1a (JDW 1164)", "sequence-type": "addgene-full", "addgene_id": "224473", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224473.addgene-full.gb" }, @@ -76681,7 +96677,6 @@ "plasmid_name": "R777-E087 Hs.FGFR3", "sequence-type": "depositor-full", "addgene_id": "70371", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -76693,7 +96688,10 @@ "plasmid_name": "TFORF2936", "sequence-type": "addgene-full", "addgene_id": "144412", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144412.addgene-full.gb" }, @@ -76702,7 +96700,6 @@ "plasmid_name": "UBI10:RFP-RabG3B-CA", "sequence-type": "addgene-full", "addgene_id": "102371", - "references": [], "kit": null, "file": "data/addgene_plasmids/102371.addgene-full.gb" }, @@ -76711,7 +96708,10 @@ "plasmid_name": "actc1b-mKate2-ARF1-DN", "sequence-type": "addgene-full", "addgene_id": "109536", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109536.addgene-full.gb" }, @@ -76720,7 +96720,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP13", "sequence-type": "addgene-full", "addgene_id": "158364", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158364.addgene-full.gb" }, @@ -76729,7 +96732,10 @@ "plasmid_name": "pcDNA pDEST40 Cas9-HMGB1", "sequence-type": "addgene-full", "addgene_id": "183195", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "file": "data/addgene_plasmids/183195.addgene-full.gb" }, @@ -76738,7 +96744,10 @@ "plasmid_name": "TFORF3013", "sequence-type": "addgene-full", "addgene_id": "144489", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144489.addgene-full.gb" }, @@ -76747,7 +96756,6 @@ "plasmid_name": "sCFP in pBSDONR P4r-P2", "sequence-type": "addgene-full", "addgene_id": "121530", - "references": [], "kit": null, "file": "data/addgene_plasmids/121530.addgene-full.gb" }, @@ -76756,7 +96764,6 @@ "plasmid_name": "R777-E332 Hs.SPRY3-nostop", "sequence-type": "depositor-full", "addgene_id": "70616", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -76768,7 +96775,10 @@ "plasmid_name": "pDONR221-SLC35G3_STOP", "sequence-type": "addgene-full", "addgene_id": "161298", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161298.addgene-full.gb" }, @@ -76777,7 +96787,10 @@ "plasmid_name": "5'-3xFLAG Camta2-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212048", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212048.addgene-full.gb" }, @@ -76786,7 +96799,10 @@ "plasmid_name": "pDONR223_ASCL4_WT", "sequence-type": "addgene-full", "addgene_id": "81909", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -76798,7 +96814,10 @@ "plasmid_name": "hDAGLa-V5", "sequence-type": "addgene-full", "addgene_id": "87676", - "references": [], + "references": [ + "https://doi.org/10.1042/BSR20160073", + "https://www.ncbi.nlm.nih.gov/pubmed/27013337" + ], "kit": null, "file": "data/addgene_plasmids/87676.addgene-full.gb" }, @@ -76807,7 +96826,10 @@ "plasmid_name": "pYPQ230-RR", "sequence-type": "addgene-full", "addgene_id": "108860", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "file": "data/addgene_plasmids/108860.addgene-full.gb" }, @@ -76816,7 +96838,10 @@ "plasmid_name": "pLenti CRISPR sgSHMT1_1", "sequence-type": "addgene-full", "addgene_id": "106311", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106311.addgene-full.gb" }, @@ -76825,7 +96850,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-IBB", "sequence-type": "addgene-full", "addgene_id": "192314", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192314.addgene-full.gb" }, @@ -76834,7 +96862,10 @@ "plasmid_name": "TFORF3293", "sequence-type": "addgene-full", "addgene_id": "144769", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144769.addgene-full.gb" }, @@ -76843,7 +96874,10 @@ "plasmid_name": "pENTR-ZmIAA8\u0394PB1", "sequence-type": "addgene-full", "addgene_id": "188432", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188432.addgene-full.gb" }, @@ -76852,7 +96886,10 @@ "plasmid_name": "pDONR223_TCF7L2_WT", "sequence-type": "addgene-full", "addgene_id": "81769", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81769.addgene-full.gb" }, @@ -76861,7 +96898,10 @@ "plasmid_name": "pENTR4-V5-2-Ubc9 (w345-2)", "sequence-type": "depositor-full", "addgene_id": "17407", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17407.depositor-full.gb" }, @@ -76870,7 +96910,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBE2QL1-Strep/HA", "sequence-type": "addgene-full", "addgene_id": "124666", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "file": "data/addgene_plasmids/124666.addgene-full.gb" }, @@ -76879,7 +96922,10 @@ "plasmid_name": "pAG416GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14316", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -76891,7 +96937,10 @@ "plasmid_name": "pCLX-UBI-Tred", "sequence-type": "depositor-full", "addgene_id": "27246", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "file": "data/addgene_plasmids/27246.depositor-full.gb" }, @@ -76900,7 +96949,10 @@ "plasmid_name": "pEN_TTmcs", "sequence-type": "depositor-full", "addgene_id": "25755", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0606179103", + "https://www.ncbi.nlm.nih.gov/pubmed/16945906" + ], "kit": null, "file": "data/addgene_plasmids/25755.depositor-full.gb" }, @@ -76909,7 +96961,10 @@ "plasmid_name": "pCM1.122", "sequence-type": "depositor-full", "addgene_id": "21383", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21383.depositor-full.gb" }, @@ -76918,7 +96973,9 @@ "plasmid_name": "pLenti UBC hNLRP3-mNG", "sequence-type": "addgene-full", "addgene_id": "218642", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218642.addgene-full.gb" }, @@ -76927,7 +96984,10 @@ "plasmid_name": "pCMB-TGNVHAr", "sequence-type": "depositor-full", "addgene_id": "61179", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61179.depositor-full.gb" }, @@ -76936,7 +96996,10 @@ "plasmid_name": "TFORF3433", "sequence-type": "addgene-full", "addgene_id": "144909", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144909.addgene-full.gb" }, @@ -76945,7 +97008,10 @@ "plasmid_name": "pENTR-AtTAS1c-D2-B/c", "sequence-type": "addgene-full", "addgene_id": "137883", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkaa343", + "https://www.ncbi.nlm.nih.gov/pubmed/32396204" + ], "kit": null, "file": "data/addgene_plasmids/137883.addgene-full.gb" }, @@ -76954,7 +97020,10 @@ "plasmid_name": "pDONR223_DOK1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82974", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82974.addgene-full.gb" }, @@ -76963,7 +97032,10 @@ "plasmid_name": "TFORF3547", "sequence-type": "depositor-full", "addgene_id": "145023", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145023.depositor-full.gb" }, @@ -76972,7 +97044,10 @@ "plasmid_name": "pDONR223_KIF2B_WT", "sequence-type": "addgene-full", "addgene_id": "81489", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -76984,7 +97059,10 @@ "plasmid_name": "IX104: pMVP (L5-L4) myc epitope tag", "sequence-type": "addgene-full", "addgene_id": "121704", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121704.addgene-full.gb" }, @@ -76993,7 +97071,10 @@ "plasmid_name": "pENTR223-BPLF1_1501-2500", "sequence-type": "addgene-full", "addgene_id": "198585", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198585.addgene-full.gb" }, @@ -77002,7 +97083,10 @@ "plasmid_name": "pDEST47-ARL8B-GFP", "sequence-type": "addgene-full", "addgene_id": "67404", - "references": [], + "references": [ + "https://doi.org/10.1080/21592799.2015.1090523", + "https://www.ncbi.nlm.nih.gov/pubmed/27057421" + ], "kit": null, "file": "data/addgene_plasmids/67404.addgene-full.gb" }, @@ -77011,7 +97095,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.L37H", "sequence-type": "addgene-full", "addgene_id": "81412", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -77023,7 +97110,9 @@ "plasmid_name": "pENTR1a-mCherry-STIM1", "sequence-type": "addgene-full", "addgene_id": "114176", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29176619" + ], "kit": null, "file": "data/addgene_plasmids/114176.addgene-full.gb" }, @@ -77032,7 +97121,10 @@ "plasmid_name": "TFORF3150", "sequence-type": "addgene-full", "addgene_id": "144626", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144626.addgene-full.gb" }, @@ -77041,7 +97133,10 @@ "plasmid_name": "p3E-rab39bb", "sequence-type": "addgene-full", "addgene_id": "109702", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109702.addgene-full.gb" }, @@ -77050,7 +97145,10 @@ "plasmid_name": "p3E-DrCav1", "sequence-type": "addgene-full", "addgene_id": "194290", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "file": "data/addgene_plasmids/194290.addgene-full.gb" }, @@ -77059,7 +97157,10 @@ "plasmid_name": "CRYZL1_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177004", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/177004.addgene-full.gb" }, @@ -77068,7 +97169,9 @@ "plasmid_name": "pDONR221-DDX5\u0394IDR", "sequence-type": "addgene-full", "addgene_id": "166165", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166165.addgene-full.gb" }, @@ -77077,7 +97180,10 @@ "plasmid_name": "pHAGE-BRAF-G464E", "sequence-type": "addgene-full", "addgene_id": "116146", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116146.addgene-full.gb" }, @@ -77086,7 +97192,10 @@ "plasmid_name": "pcDNA3.2 V5-DEST mir-1-1 reporter", "sequence-type": "depositor-full", "addgene_id": "46646", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46646.depositor-full.gb" }, @@ -77095,7 +97204,10 @@ "plasmid_name": "pDONR223 MERS-CoV NSP15_stop", "sequence-type": "addgene-full", "addgene_id": "168640", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168640.addgene-full.gb" }, @@ -77104,7 +97216,10 @@ "plasmid_name": "pYPQ230-STU", "sequence-type": "addgene-full", "addgene_id": "138110", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138110.addgene-full.gb" }, @@ -77113,7 +97228,10 @@ "plasmid_name": "pWPI-E2F1", "sequence-type": "addgene-full", "addgene_id": "114296", - "references": [], + "references": [ + "https://doi.org/10.4161/cc.25834", + "https://www.ncbi.nlm.nih.gov/pubmed/23907129" + ], "kit": null, "file": "data/addgene_plasmids/114296.addgene-full.gb" }, @@ -77122,7 +97240,10 @@ "plasmid_name": "pDONR223_OR2G6_WT", "sequence-type": "addgene-full", "addgene_id": "81846", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -77134,7 +97255,10 @@ "plasmid_name": "pEF-ENTR A (696-6)", "sequence-type": "addgene-full", "addgene_id": "17427", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17427.addgene-full.gb" }, @@ -77143,7 +97267,9 @@ "plasmid_name": "pENTR1a-CRISPRoffv2.1", "sequence-type": "addgene-full", "addgene_id": "207174", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207174.addgene-full.gb" }, @@ -77152,7 +97278,6 @@ "plasmid_name": "pAG1guide_RUBY_EggCas9", "sequence-type": "addgene-full", "addgene_id": "225983", - "references": [], "kit": null, "file": "data/addgene_plasmids/225983.addgene-full.gb" }, @@ -77161,7 +97286,10 @@ "plasmid_name": "pcDNA3_SP-GLP1R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194379", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194379.addgene-full.gb" }, @@ -77170,7 +97298,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-N-mCherry", "sequence-type": "addgene-full", "addgene_id": "223948", - "references": [], "kit": null, "file": "data/addgene_plasmids/223948.addgene-full.gb" }, @@ -77179,7 +97306,10 @@ "plasmid_name": "CSIV-TRE-ASCL1", "sequence-type": "addgene-full", "addgene_id": "154883", - "references": [], + "references": [ + "https://doi.org/10.3390/cells10010006", + "https://www.ncbi.nlm.nih.gov/pubmed/33375083" + ], "kit": null, "file": "data/addgene_plasmids/154883.addgene-full.gb" }, @@ -77188,7 +97318,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep72", "sequence-type": "addgene-full", "addgene_id": "136868", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136868.addgene-full.gb" }, @@ -77197,7 +97330,10 @@ "plasmid_name": "pDONR223_TPK1_p.G48C", "sequence-type": "addgene-full", "addgene_id": "82806", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82806.addgene-full.gb" }, @@ -77206,7 +97342,10 @@ "plasmid_name": "SLC25A1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98374", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98374.addgene-full.gb" }, @@ -77215,7 +97354,6 @@ "plasmid_name": "pENTR1A-Huwe1 C4341S", "sequence-type": "depositor-full", "addgene_id": "37432", - "references": [], "kit": null, "file": "data/addgene_plasmids/37432.depositor-full.gb" }, @@ -77224,7 +97362,6 @@ "plasmid_name": "R777-E011 Hs.ARHGAP35", "sequence-type": "depositor-full", "addgene_id": "70295", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -77236,7 +97373,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM E274R", "sequence-type": "addgene-full", "addgene_id": "169984", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169984.addgene-full.gb" }, @@ -77245,7 +97385,10 @@ "plasmid_name": "p3E-ARF1-DN", "sequence-type": "addgene-full", "addgene_id": "109590", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109590.addgene-full.gb" }, @@ -77254,7 +97397,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP8", "sequence-type": "addgene-full", "addgene_id": "158359", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158359.addgene-full.gb" }, @@ -77263,7 +97409,10 @@ "plasmid_name": "pAC91-pmax-dCas9VP64", "sequence-type": "depositor-full", "addgene_id": "48223", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/48223.depositor-full.gb" }, @@ -77272,7 +97421,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168886", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168886.addgene-full.gb" }, @@ -77281,7 +97433,10 @@ "plasmid_name": "5'-3xFLAG Smarcc2+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212075", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212075.addgene-full.gb" }, @@ -77290,7 +97445,10 @@ "plasmid_name": "pDONR221-ZNF233", "sequence-type": "depositor-full", "addgene_id": "101558", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101558.depositor-full.gb" }, @@ -77299,7 +97457,10 @@ "plasmid_name": "pEZYpci", "sequence-type": "depositor-full", "addgene_id": "18707", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18707.depositor-full.gb" }, @@ -77308,7 +97469,10 @@ "plasmid_name": "pMX_mePOU", "sequence-type": "addgene-full", "addgene_id": "206396", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msab075", + "https://www.ncbi.nlm.nih.gov/pubmed/33720298" + ], "kit": null, "file": "data/addgene_plasmids/206396.addgene-full.gb" }, @@ -77317,7 +97481,10 @@ "plasmid_name": "pDONR223_THEMIS_p.H366Q", "sequence-type": "addgene-full", "addgene_id": "81560", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -77329,7 +97496,10 @@ "plasmid_name": "pDONR221-SLC25A16_STOP", "sequence-type": "addgene-full", "addgene_id": "161145", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161145.addgene-full.gb" }, @@ -77338,7 +97508,10 @@ "plasmid_name": "MLKP2delKASH", "sequence-type": "addgene-full", "addgene_id": "130838", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130838.addgene-full.gb" }, @@ -77347,7 +97520,10 @@ "plasmid_name": "R619-M91-303: CMV51p> HCoV-NL63 S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166017", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/166017.addgene-full.gb" }, @@ -77356,7 +97532,10 @@ "plasmid_name": "pSLIK 3xFLAG-KPNA1 zeo", "sequence-type": "addgene-full", "addgene_id": "192329", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192329.addgene-full.gb" }, @@ -77365,7 +97544,10 @@ "plasmid_name": "pLenti CMV TRE3G Neo GFP-Progerin C661S", "sequence-type": "addgene-full", "addgene_id": "118711", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.08.024", + "https://www.ncbi.nlm.nih.gov/pubmed/26341717" + ], "kit": null, "file": "data/addgene_plasmids/118711.addgene-full.gb" }, @@ -77374,7 +97556,10 @@ "plasmid_name": "p3E-rab15", "sequence-type": "addgene-full", "addgene_id": "109670", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109670.addgene-full.gb" }, @@ -77383,7 +97568,10 @@ "plasmid_name": "TFORF3278", "sequence-type": "addgene-full", "addgene_id": "144754", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144754.addgene-full.gb" }, @@ -77392,7 +97580,6 @@ "plasmid_name": "R777-E257 Hs.RASSF3", "sequence-type": "depositor-full", "addgene_id": "70541", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -77416,7 +97603,10 @@ "plasmid_name": "pDONR223_TP53_WT", "sequence-type": "addgene-full", "addgene_id": "81754", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -77428,7 +97618,10 @@ "plasmid_name": "TFORF3084", "sequence-type": "addgene-full", "addgene_id": "144560", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144560.addgene-full.gb" }, @@ -77437,7 +97630,9 @@ "plasmid_name": "pMpGWB430", "sequence-type": "depositor-full", "addgene_id": "68695", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68695.depositor-full.gb" }, @@ -77446,7 +97641,9 @@ "plasmid_name": "AAV-CMV-dSaCas9-NLS-3xHA-3xSunTag_bGHpA", "sequence-type": "addgene-full", "addgene_id": "177342", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-1065603/v1" + ], "kit": null, "file": "data/addgene_plasmids/177342.addgene-full.gb" }, @@ -77455,7 +97652,10 @@ "plasmid_name": "pGGEV_6'_Linker", "sequence-type": "depositor-full", "addgene_id": "49292", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -77467,7 +97667,10 @@ "plasmid_name": "TFORF3458", "sequence-type": "addgene-full", "addgene_id": "144934", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144934.addgene-full.gb" }, @@ -77476,7 +97679,10 @@ "plasmid_name": "pHAGE-BRAF-T599A", "sequence-type": "addgene-full", "addgene_id": "116200", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116200.addgene-full.gb" }, @@ -77485,7 +97691,10 @@ "plasmid_name": "pDONR221_SLC16A13", "sequence-type": "addgene-full", "addgene_id": "131875", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131875.addgene-full.gb" }, @@ -77494,7 +97703,10 @@ "plasmid_name": "pLenti6.2_3xFLAG_V5_ mmDdx58_V5", "sequence-type": "addgene-full", "addgene_id": "160108", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160108.addgene-full.gb" }, @@ -77503,7 +97715,10 @@ "plasmid_name": "TFORF3204", "sequence-type": "addgene-full", "addgene_id": "144680", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144680.addgene-full.gb" }, @@ -77512,7 +97727,10 @@ "plasmid_name": "KH305: pMVP (R4-R3) \u03b2gal open", "sequence-type": "addgene-full", "addgene_id": "121739", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121739.addgene-full.gb" }, @@ -77521,7 +97739,10 @@ "plasmid_name": "pDONR223_PSME2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82949", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82949.addgene-full.gb" }, @@ -77530,7 +97751,10 @@ "plasmid_name": "pDONR221-SLC7A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161091", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161091.addgene-full.gb" }, @@ -77539,7 +97763,10 @@ "plasmid_name": "pNOC-FLUC", "sequence-type": "addgene-full", "addgene_id": "98140", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.14314", + "https://www.ncbi.nlm.nih.gov/pubmed/30883973" + ], "kit": null, "file": "data/addgene_plasmids/98140.addgene-full.gb" }, @@ -77548,7 +97775,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_S-frag5", "sequence-type": "addgene-full", "addgene_id": "169404", - "references": [], "kit": null, "file": "data/addgene_plasmids/169404.addgene-full.gb" }, @@ -77557,7 +97783,10 @@ "plasmid_name": "LG002: pMAGIC (L1-R5) mU6::xCas9(3.7) gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121816", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121816.addgene-full.gb" }, @@ -77566,7 +97795,9 @@ "plasmid_name": "pDONR221-CERS5", "sequence-type": "addgene-full", "addgene_id": "166158", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166158.addgene-full.gb" }, @@ -77575,7 +97806,10 @@ "plasmid_name": "p7136 pHAGE-P-CMVt-N-HA-GAW-EIF3H", "sequence-type": "addgene-full", "addgene_id": "100148", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100148.addgene-full.gb" }, @@ -77584,7 +97818,10 @@ "plasmid_name": "A1-LCD+23G-23S", "sequence-type": "addgene-full", "addgene_id": "178685", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178685.addgene-full.gb" }, @@ -77593,7 +97830,10 @@ "plasmid_name": "pDONR221 Rrp1", "sequence-type": "depositor-full", "addgene_id": "63773", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63773.depositor-full.gb" }, @@ -77602,7 +97842,9 @@ "plasmid_name": "pPB-cT3G-cERP2-MEIOSIN", "sequence-type": "addgene-full", "addgene_id": "222551", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222551.addgene-full.gb" }, @@ -77611,7 +97853,10 @@ "plasmid_name": "pEF-DEST51-GOLPH3", "sequence-type": "addgene-full", "addgene_id": "21690", - "references": [], + "references": [ + "https://doi.org/10.1038/nature08109", + "https://www.ncbi.nlm.nih.gov/pubmed/19553991" + ], "kit": null, "file": "data/addgene_plasmids/21690.addgene-full.gb" }, @@ -77620,7 +97865,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO-miR-30 L1-R5", "sequence-type": "depositor-full", "addgene_id": "62122", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62122.depositor-full.gb" }, @@ -77629,7 +97877,10 @@ "plasmid_name": "pGC157", "sequence-type": "depositor-full", "addgene_id": "19682", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19682.depositor-full.gb" }, @@ -77638,7 +97889,10 @@ "plasmid_name": "TRAPPC10_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53937", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53937.addgene-full.gb" }, @@ -77647,7 +97901,10 @@ "plasmid_name": "pHAGE-IDH1", "sequence-type": "addgene-full", "addgene_id": "116751", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116751.addgene-full.gb" }, @@ -77656,7 +97913,6 @@ "plasmid_name": "R777-E191 Hs.PRKAA1", "sequence-type": "depositor-full", "addgene_id": "70475", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -77668,7 +97924,10 @@ "plasmid_name": "pDONR223-LMTK2", "sequence-type": "addgene-full", "addgene_id": "23914", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -77680,7 +97939,10 @@ "plasmid_name": "pSC25", "sequence-type": "addgene-full", "addgene_id": "104799", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104799.addgene-full.gb" }, @@ -77689,7 +97951,6 @@ "plasmid_name": "IDG_KCNG4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161620", - "references": [], "kit": null, "file": "data/addgene_plasmids/161620.addgene-full.gb" }, @@ -77698,7 +97959,10 @@ "plasmid_name": "pPPEDs", "sequence-type": "addgene-full", "addgene_id": "162469", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.617553", + "https://www.ncbi.nlm.nih.gov/pubmed/34713247" + ], "kit": null, "file": "data/addgene_plasmids/162469.addgene-full.gb" }, @@ -77707,7 +97971,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-MYBBP1A", "sequence-type": "addgene-full", "addgene_id": "38084", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38084.addgene-full.gb" }, @@ -77716,7 +97983,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-CSNK1E", "sequence-type": "depositor-full", "addgene_id": "38078", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38078.depositor-full.gb" }, @@ -77725,7 +97995,10 @@ "plasmid_name": "1a138", "sequence-type": "addgene-full", "addgene_id": "177688", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "file": "data/addgene_plasmids/177688.addgene-full.gb" }, @@ -77734,7 +98007,10 @@ "plasmid_name": "pDONR221_SLC25A44", "sequence-type": "addgene-full", "addgene_id": "132042", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132042.addgene-full.gb" }, @@ -77743,7 +98019,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir40-1", "sequence-type": "depositor-full", "addgene_id": "46696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46696.depositor-full.gb" }, @@ -77752,7 +98031,6 @@ "plasmid_name": "pDONR221-zgc:110006", "sequence-type": "addgene-full", "addgene_id": "192737", - "references": [], "kit": null, "file": "data/addgene_plasmids/192737.addgene-full.gb" }, @@ -77761,7 +98039,10 @@ "plasmid_name": "114_UBI_iCre_crystGFP", "sequence-type": "addgene-full", "addgene_id": "171797", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "file": "data/addgene_plasmids/171797.addgene-full.gb" }, @@ -77770,7 +98051,10 @@ "plasmid_name": "pLX304", "sequence-type": "addgene-full", "addgene_id": "25890", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "file": "data/addgene_plasmids/25890.addgene-full.gb" }, @@ -77779,7 +98063,10 @@ "plasmid_name": "pDONR221_SLC4A2", "sequence-type": "addgene-full", "addgene_id": "132276", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132276.addgene-full.gb" }, @@ -77788,7 +98075,6 @@ "plasmid_name": "pETDest", "sequence-type": "addgene-full", "addgene_id": "124245", - "references": [], "kit": null, "file": "data/addgene_plasmids/124245.addgene-full.gb" }, @@ -77797,7 +98083,10 @@ "plasmid_name": "pAG416GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14388", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -77809,7 +98098,10 @@ "plasmid_name": "pYPQ301", "sequence-type": "addgene-full", "addgene_id": "205415", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2023.1251903", + "https://www.ncbi.nlm.nih.gov/pubmed/37901282" + ], "kit": null, "file": "data/addgene_plasmids/205415.addgene-full.gb" }, @@ -77818,7 +98110,10 @@ "plasmid_name": "pCR8/GW/TOPO-ETV6", "sequence-type": "addgene-full", "addgene_id": "98625", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98625.addgene-full.gb" }, @@ -77827,7 +98122,10 @@ "plasmid_name": "pDONR223_CBX3_WT", "sequence-type": "addgene-full", "addgene_id": "82103", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82103.addgene-full.gb" }, @@ -77836,7 +98134,10 @@ "plasmid_name": "C453-E02: attB4-CAGp>-attB5", "sequence-type": "addgene-full", "addgene_id": "162972", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -77848,7 +98149,10 @@ "plasmid_name": "pENTR223-LMP1", "sequence-type": "addgene-full", "addgene_id": "195805", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195805.addgene-full.gb" }, @@ -77857,7 +98161,10 @@ "plasmid_name": "Flag-HA-USP1", "sequence-type": "addgene-full", "addgene_id": "22596", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22596.addgene-full.gb" }, @@ -77866,7 +98173,10 @@ "plasmid_name": "pDONR221_SLC6A6", "sequence-type": "addgene-full", "addgene_id": "132196", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132196.addgene-full.gb" }, @@ -77875,7 +98185,10 @@ "plasmid_name": "pAG416GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14412", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -77887,7 +98200,10 @@ "plasmid_name": "MSCV-N SV40 ST", "sequence-type": "addgene-full", "addgene_id": "37858", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "file": "data/addgene_plasmids/37858.addgene-full.gb" }, @@ -77896,7 +98212,10 @@ "plasmid_name": "pHAGE-SRSF2-P95H", "sequence-type": "addgene-full", "addgene_id": "116685", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116685.addgene-full.gb" }, @@ -77905,7 +98224,10 @@ "plasmid_name": "pEAHISMRSA1376", "sequence-type": "addgene-full", "addgene_id": "97002", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97002.addgene-full.gb" }, @@ -77914,7 +98236,10 @@ "plasmid_name": "pLentiPGK Puro DEST JNKKTRClover", "sequence-type": "depositor-full", "addgene_id": "59151", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59151.depositor-full.gb" }, @@ -77923,7 +98248,10 @@ "plasmid_name": "p35S::SISOBIR1-YFPn", "sequence-type": "addgene-full", "addgene_id": "86163", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "file": "data/addgene_plasmids/86163.addgene-full.gb" }, @@ -77932,7 +98260,10 @@ "plasmid_name": "pT2-cryR;sheCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90150.addgene-full.gb" }, @@ -77941,7 +98272,10 @@ "plasmid_name": "pAG424GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14175", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -77953,7 +98287,10 @@ "plasmid_name": "pDONR223_SDHA_WT", "sequence-type": "addgene-full", "addgene_id": "82278", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82278.addgene-full.gb" }, @@ -77962,7 +98299,10 @@ "plasmid_name": "pDONR221-SLCO4C1_STOP", "sequence-type": "addgene-full", "addgene_id": "161414", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161414.addgene-full.gb" }, @@ -77971,7 +98311,10 @@ "plasmid_name": "pCFJ2560 - pEXP(mosTI, unc-119)[Peft-3 | ceGFP(PATC, NLS) | tbb-2 3'UTR]", "sequence-type": "addgene-full", "addgene_id": "159825", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "file": "data/addgene_plasmids/159825.addgene-full.gb" }, @@ -77980,7 +98323,10 @@ "plasmid_name": "tetO-MITF", "sequence-type": "addgene-full", "addgene_id": "170695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170695.addgene-full.gb" }, @@ -77989,7 +98335,10 @@ "plasmid_name": "pDONR223_CD40_WT", "sequence-type": "addgene-full", "addgene_id": "82198", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82198.addgene-full.gb" }, @@ -77998,7 +98347,10 @@ "plasmid_name": "pDONR223_ACD_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83001", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83001.addgene-full.gb" }, @@ -78007,7 +98359,9 @@ "plasmid_name": "pDestTol2-QUAS:GFP-CAAX-he1.1:YFP", "sequence-type": "addgene-full", "addgene_id": "184816", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "file": "data/addgene_plasmids/184816.addgene-full.gb" }, @@ -78016,7 +98370,10 @@ "plasmid_name": "p3E ubb polyA", "sequence-type": "addgene-full", "addgene_id": "195977", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195977.addgene-full.gb" }, @@ -78025,7 +98382,6 @@ "plasmid_name": "R777-E307 Hs.SHC1", "sequence-type": "depositor-full", "addgene_id": "70591", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -78037,7 +98393,10 @@ "plasmid_name": "pGATOR-DTA", "sequence-type": "depositor-full", "addgene_id": "64103", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1312062110", + "https://www.ncbi.nlm.nih.gov/pubmed/24082130" + ], "kit": null, "file": "data/addgene_plasmids/64103.depositor-full.gb" }, @@ -78046,7 +98405,10 @@ "plasmid_name": "pAG423GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14222", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -78058,7 +98420,9 @@ "plasmid_name": "pMpGWB317", "sequence-type": "depositor-full", "addgene_id": "68645", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68645.depositor-full.gb" }, @@ -78067,7 +98431,6 @@ "plasmid_name": "pENTR-R2L3-pA-floxPGKneopA", "sequence-type": "addgene-full", "addgene_id": "139543", - "references": [], "kit": null, "file": "data/addgene_plasmids/139543.addgene-full.gb" }, @@ -78076,7 +98439,10 @@ "plasmid_name": "pDONR221-TUSC3", "sequence-type": "addgene-full", "addgene_id": "132304", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132304.addgene-full.gb" }, @@ -78085,7 +98451,10 @@ "plasmid_name": "pFRT/TO/FLAG/HA-DEST DICER", "sequence-type": "depositor-full", "addgene_id": "19881", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19881.depositor-full.gb" }, @@ -78094,7 +98463,10 @@ "plasmid_name": "pTRE-HRI-V5-IRES-BFP", "sequence-type": "addgene-full", "addgene_id": "202435", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-22-1230", + "https://www.ncbi.nlm.nih.gov/pubmed/36576405" + ], "kit": null, "file": "data/addgene_plasmids/202435.addgene-full.gb" }, @@ -78103,7 +98475,10 @@ "plasmid_name": "pDEST40-2XFL-Src-Y419F", "sequence-type": "addgene-full", "addgene_id": "140317", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140317.addgene-full.gb" }, @@ -78112,7 +98487,10 @@ "plasmid_name": "pDest-303", "sequence-type": "addgene-full", "addgene_id": "159678", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "file": "data/addgene_plasmids/159678.addgene-full.gb" }, @@ -78121,7 +98499,6 @@ "plasmid_name": "p667-UBC-AAK1-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135256", - "references": [], "kit": null, "file": "data/addgene_plasmids/135256.addgene-full.gb" }, @@ -78130,7 +98507,10 @@ "plasmid_name": "pLenti-PGK-ER-KRAS(G12V)", "sequence-type": "addgene-full", "addgene_id": "35635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2011.12.033", + "https://www.ncbi.nlm.nih.gov/pubmed/22341439" + ], "kit": null, "file": "data/addgene_plasmids/35635.addgene-full.gb" }, @@ -78139,7 +98519,6 @@ "plasmid_name": "pE-mApple L5L2", "sequence-type": "addgene-full", "addgene_id": "187690", - "references": [], "kit": null, "file": "data/addgene_plasmids/187690.addgene-full.gb" }, @@ -78148,7 +98527,6 @@ "plasmid_name": "IDG_CACNB4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161686", - "references": [], "kit": null, "file": "data/addgene_plasmids/161686.addgene-full.gb" }, @@ -78157,7 +98535,10 @@ "plasmid_name": "mTALEAD nad7-2", "sequence-type": "addgene-full", "addgene_id": "210832", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "file": "data/addgene_plasmids/210832.addgene-full.gb" }, @@ -78166,7 +98547,10 @@ "plasmid_name": "pHAGE-IGF1R-P327S", "sequence-type": "addgene-full", "addgene_id": "116417", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116417.addgene-full.gb" }, @@ -78175,7 +98559,10 @@ "plasmid_name": "pE1B-C-F/Sox10-MCS9", "sequence-type": "depositor-full", "addgene_id": "20248", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1000174", + "https://www.ncbi.nlm.nih.gov/pubmed/18773071" + ], "kit": null, "file": "data/addgene_plasmids/20248.depositor-full.gb" }, @@ -78184,7 +98571,6 @@ "plasmid_name": "EFR Y875F (15)", "sequence-type": "addgene-full", "addgene_id": "102414", - "references": [], "kit": null, "file": "data/addgene_plasmids/102414.addgene-full.gb" }, @@ -78193,7 +98579,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16-18 E7 Chimera B", "sequence-type": "addgene-full", "addgene_id": "191543", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "file": "data/addgene_plasmids/191543.addgene-full.gb" }, @@ -78202,7 +98591,10 @@ "plasmid_name": "PTPRA_C433S-GFP fusion", "sequence-type": "addgene-full", "addgene_id": "139638", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139638.addgene-full.gb" }, @@ -78211,7 +98603,6 @@ "plasmid_name": "p41Nat MagicFluor", "sequence-type": "depositor-full", "addgene_id": "58563", - "references": [], "kit": null, "file": "data/addgene_plasmids/58563.depositor-full.gb" }, @@ -78220,7 +98611,10 @@ "plasmid_name": "pDL200", "sequence-type": "addgene-full", "addgene_id": "175931", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175931.addgene-full.gb" }, @@ -78229,7 +98623,10 @@ "plasmid_name": "pLenti X2 Puro DEST (w16-1)", "sequence-type": "addgene-full", "addgene_id": "17296", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17296.addgene-full.gb" }, @@ -78238,7 +98635,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS2_HindIII", "sequence-type": "depositor-full", "addgene_id": "65666", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65666.depositor-full.gb" }, @@ -78247,7 +98647,10 @@ "plasmid_name": "TFORF3519", "sequence-type": "depositor-full", "addgene_id": "144995", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144995.depositor-full.gb" }, @@ -78256,7 +98659,10 @@ "plasmid_name": "pdestMB14_grh-1p-grh-1-gfp", "sequence-type": "addgene-full", "addgene_id": "177761", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-27732-4", + "https://www.ncbi.nlm.nih.gov/pubmed/35013237" + ], "kit": null, "file": "data/addgene_plasmids/177761.addgene-full.gb" }, @@ -78265,7 +98671,6 @@ "plasmid_name": "pENTR1A-Huwe1", "sequence-type": "addgene-full", "addgene_id": "37431", - "references": [], "kit": null, "file": "data/addgene_plasmids/37431.addgene-full.gb" }, @@ -78274,7 +98679,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L5L4", "sequence-type": "addgene-full", "addgene_id": "113741", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -78286,7 +98694,10 @@ "plasmid_name": "pMuLE ENTR MCS L3-L2", "sequence-type": "depositor-full", "addgene_id": "62088", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62088.depositor-full.gb" }, @@ -78295,7 +98706,10 @@ "plasmid_name": "pCR8/GW/TOPO-SRF", "sequence-type": "addgene-full", "addgene_id": "98618", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98618.addgene-full.gb" }, @@ -78304,7 +98718,10 @@ "plasmid_name": "MAC_N_STA5A", "sequence-type": "addgene-full", "addgene_id": "167799", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167799.addgene-full.gb" }, @@ -78313,7 +98730,10 @@ "plasmid_name": "pDONR223_WNT2_p.V334M", "sequence-type": "addgene-full", "addgene_id": "81377", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -78325,7 +98745,10 @@ "plasmid_name": "pCFJ2365 - Intron GG1 - 250bp no PATC", "sequence-type": "addgene-full", "addgene_id": "159883", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159883.addgene-full.gb" }, @@ -78334,7 +98757,10 @@ "plasmid_name": "GFP-RAB35", "sequence-type": "addgene-full", "addgene_id": "164630", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164630.addgene-full.gb" }, @@ -78343,7 +98769,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-GABARAPL2", "sequence-type": "addgene-full", "addgene_id": "175751", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175751.addgene-full.gb" }, @@ -78352,7 +98781,10 @@ "plasmid_name": "MSCV-N JCV mad1 ER", "sequence-type": "addgene-full", "addgene_id": "37865", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "file": "data/addgene_plasmids/37865.addgene-full.gb" }, @@ -78361,7 +98793,10 @@ "plasmid_name": "pT2-CMV/TetO2-EYFP-GW", "sequence-type": "addgene-full", "addgene_id": "153309", - "references": [], + "references": [ + "https://doi.org/10.1016/j.redox.2020.101458", + "https://www.ncbi.nlm.nih.gov/pubmed/32145456" + ], "kit": null, "file": "data/addgene_plasmids/153309.addgene-full.gb" }, @@ -78370,7 +98805,6 @@ "plasmid_name": "DDX3X - P324Q in pENTR", "sequence-type": "addgene-full", "addgene_id": "216579", - "references": [], "kit": null, "file": "data/addgene_plasmids/216579.addgene-full.gb" }, @@ -78379,7 +98813,10 @@ "plasmid_name": "pENTR2-L3-SfoI-tdTomato-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141021", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141021.addgene-full.gb" }, @@ -78388,7 +98825,10 @@ "plasmid_name": "pWS939", "sequence-type": "addgene-full", "addgene_id": "123051", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123051.addgene-full.gb" }, @@ -78397,7 +98837,10 @@ "plasmid_name": "pDONR221_SLC38A4", "sequence-type": "addgene-full", "addgene_id": "132130", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132130.addgene-full.gb" }, @@ -78406,7 +98849,6 @@ "plasmid_name": "pcDNA3.1-ccdB-3xHA", "sequence-type": "addgene-full", "addgene_id": "214986", - "references": [], "kit": null, "file": "data/addgene_plasmids/214986.addgene-full.gb" }, @@ -78415,7 +98857,10 @@ "plasmid_name": "pDONR221-SLC25A19_STOP", "sequence-type": "addgene-full", "addgene_id": "161429", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161429.addgene-full.gb" }, @@ -78424,7 +98869,10 @@ "plasmid_name": "pDONR223_SOCS3_WT", "sequence-type": "addgene-full", "addgene_id": "82245", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82245.addgene-full.gb" }, @@ -78445,7 +98893,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0424-luc2", "sequence-type": "addgene-full", "addgene_id": "214632", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214632.addgene-full.gb" }, @@ -78454,7 +98905,10 @@ "plasmid_name": "BirA-Myc_N_FOXI1", "sequence-type": "addgene-full", "addgene_id": "167702", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167702.addgene-full.gb" }, @@ -78463,7 +98917,6 @@ "plasmid_name": "pAG416GALL-Bat-CoV-HKU9_3CL", "sequence-type": "addgene-full", "addgene_id": "203478", - "references": [], "kit": null, "file": "data/addgene_plasmids/203478.addgene-full.gb" }, @@ -78472,7 +98925,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS-Gln93 hygro", "sequence-type": "addgene-full", "addgene_id": "158635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158635.addgene-full.gb" }, @@ -78481,7 +98937,10 @@ "plasmid_name": "pHAGE-PIK3CB-N553S", "sequence-type": "addgene-full", "addgene_id": "116558", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116558.addgene-full.gb" }, @@ -78490,7 +98949,6 @@ "plasmid_name": "MECP2 - P388S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216602", - "references": [], "kit": null, "file": "data/addgene_plasmids/216602.addgene-full.gb" }, @@ -78499,7 +98957,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp9", "sequence-type": "depositor-full", "addgene_id": "168898", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168898.depositor-full.gb" }, @@ -78508,7 +98969,10 @@ "plasmid_name": "pcDNA5/FRT/TO/MACROD1", "sequence-type": "addgene-full", "addgene_id": "172578", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172578.addgene-full.gb" }, @@ -78517,7 +98981,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NN_G1397-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171731", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171731.addgene-full.gb" }, @@ -78526,7 +98993,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0372-luc2", "sequence-type": "addgene-full", "addgene_id": "214616", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214616.addgene-full.gb" }, @@ -78535,7 +99005,10 @@ "plasmid_name": "pT2-cryR;nrp1bCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90149", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90149.addgene-full.gb" }, @@ -78544,7 +99017,10 @@ "plasmid_name": "pENTR223-CMV-Cre-U6-sgC0111-U6-sgRb1-U6-sgTrp53-U6-sgRbl2", "sequence-type": "addgene-full", "addgene_id": "209062", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-023-01210-z", + "https://www.ncbi.nlm.nih.gov/pubmed/37591951" + ], "kit": null, "file": "data/addgene_plasmids/209062.addgene-full.gb" }, @@ -78553,7 +99029,10 @@ "plasmid_name": "p5E-pth2", "sequence-type": "addgene-full", "addgene_id": "191428", - "references": [], + "references": [ + "https://doi.org/10.1242/bio.059432", + "https://www.ncbi.nlm.nih.gov/pubmed/36161311" + ], "kit": null, "file": "data/addgene_plasmids/191428.addgene-full.gb" }, @@ -78562,7 +99041,10 @@ "plasmid_name": "pDONR221_SLC2A3", "sequence-type": "addgene-full", "addgene_id": "132114", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132114.addgene-full.gb" }, @@ -78571,7 +99053,10 @@ "plasmid_name": "Tet-CA-Src-GFP", "sequence-type": "depositor-full", "addgene_id": "83469", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201501025", + "https://www.ncbi.nlm.nih.gov/pubmed/26216901" + ], "kit": null, "file": "data/addgene_plasmids/83469.depositor-full.gb" }, @@ -78580,7 +99065,10 @@ "plasmid_name": "pDONR223 LC3B2 WT", "sequence-type": "addgene-full", "addgene_id": "123075", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123075.addgene-full.gb" }, @@ -78589,7 +99077,10 @@ "plasmid_name": "pDONR223_RARA_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83018", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83018.addgene-full.gb" }, @@ -78598,7 +99089,10 @@ "plasmid_name": "pGW-GFP-GOI-TurboID", "sequence-type": "addgene-full", "addgene_id": "209382", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "file": "data/addgene_plasmids/209382.addgene-full.gb" }, @@ -78607,7 +99101,10 @@ "plasmid_name": "POLN delP_pDEST17", "sequence-type": "depositor-full", "addgene_id": "64886", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M604317200", + "https://www.ncbi.nlm.nih.gov/pubmed/16787914" + ], "kit": null, "file": "data/addgene_plasmids/64886.depositor-full.gb" }, @@ -78616,7 +99113,10 @@ "plasmid_name": "BirA-Myc_N_SP1", "sequence-type": "addgene-full", "addgene_id": "167726", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167726.addgene-full.gb" }, @@ -78625,7 +99125,6 @@ "plasmid_name": "R777-E185 Hs.PLXNB1", "sequence-type": "depositor-full", "addgene_id": "70469", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -78637,7 +99136,10 @@ "plasmid_name": "pDONR223_RHOA_p.Q63L", "sequence-type": "addgene-full", "addgene_id": "82181", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82181.addgene-full.gb" }, @@ -78646,7 +99148,6 @@ "plasmid_name": "pAG426-GAL-Prepro-3x-Beta-Amyloid", "sequence-type": "addgene-full", "addgene_id": "181730", - "references": [], "kit": null, "file": "data/addgene_plasmids/181730.addgene-full.gb" }, @@ -78655,7 +99156,10 @@ "plasmid_name": "p8328 pLIX YAP1 S94A", "sequence-type": "addgene-full", "addgene_id": "184529", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184529.addgene-full.gb" }, @@ -78664,7 +99168,10 @@ "plasmid_name": "pDONR223_OR2G6_p.W149C", "sequence-type": "addgene-full", "addgene_id": "81353", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -78676,7 +99183,10 @@ "plasmid_name": "pLentiPGK Puro DEST JNKKTRmCerulean3", "sequence-type": "addgene-full", "addgene_id": "90232", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "file": "data/addgene_plasmids/90232.addgene-full.gb" }, @@ -78685,7 +99195,10 @@ "plasmid_name": "GLI1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176968", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176968.addgene-full.gb" }, @@ -78694,7 +99207,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TSSK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170617", - "references": [], "kit": null, "file": "data/addgene_plasmids/170617.addgene-full.gb" }, @@ -78703,7 +99215,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP3", "sequence-type": "addgene-full", "addgene_id": "169378", - "references": [], "kit": null, "file": "data/addgene_plasmids/169378.addgene-full.gb" }, @@ -78712,7 +99223,10 @@ "plasmid_name": "MAC_N_ZIC3", "sequence-type": "addgene-full", "addgene_id": "167809", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167809.addgene-full.gb" }, @@ -78721,7 +99235,10 @@ "plasmid_name": "Active Wnt10B-V5", "sequence-type": "depositor-full", "addgene_id": "43823", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43823.depositor-full.gb" }, @@ -78730,7 +99247,10 @@ "plasmid_name": "pcDNA5FRT/TO-p37-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113485", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113485.addgene-full.gb" }, @@ -78739,7 +99259,10 @@ "plasmid_name": "GFP-BRD1", "sequence-type": "addgene-full", "addgene_id": "65375", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65375.addgene-full.gb" }, @@ -78748,7 +99271,10 @@ "plasmid_name": "pENTR-L1-PGK-PuroTK-L2", "sequence-type": "addgene-full", "addgene_id": "141005", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141005.addgene-full.gb" }, @@ -78757,7 +99283,10 @@ "plasmid_name": "pDONR223-ZNF768", "sequence-type": "addgene-full", "addgene_id": "88524", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88524.addgene-full.gb" }, @@ -78766,7 +99295,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-TAOK3", "sequence-type": "addgene-full", "addgene_id": "172993", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172993.addgene-full.gb" }, @@ -78775,7 +99307,10 @@ "plasmid_name": "pENTR221-TCF7", "sequence-type": "addgene-full", "addgene_id": "79498", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79498.addgene-full.gb" }, @@ -78784,7 +99319,6 @@ "plasmid_name": "pLenti6.2-Nanoluc-ccdB", "sequence-type": "addgene-full", "addgene_id": "87078", - "references": [], "kit": null, "file": "data/addgene_plasmids/87078.addgene-full.gb" }, @@ -78793,7 +99327,10 @@ "plasmid_name": "pDONR P2R-P3-mKate2", "sequence-type": "depositor-full", "addgene_id": "48345", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -78805,7 +99342,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 CC2D", "sequence-type": "addgene-full", "addgene_id": "175775", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175775.addgene-full.gb" }, @@ -78814,7 +99354,10 @@ "plasmid_name": "pHR-PGK-PYL1-sfGFP-Coilin", "sequence-type": "addgene-full", "addgene_id": "122177", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.09.013", + "https://www.ncbi.nlm.nih.gov/pubmed/30318144" + ], "kit": null, "file": "data/addgene_plasmids/122177.addgene-full.gb" }, @@ -78823,7 +99366,10 @@ "plasmid_name": "pDONR221-SLC38A6_STOP", "sequence-type": "depositor-full", "addgene_id": "161272", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161272.depositor-full.gb" }, @@ -78832,7 +99378,10 @@ "plasmid_name": "1b25", "sequence-type": "addgene-full", "addgene_id": "177691", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "file": "data/addgene_plasmids/177691.addgene-full.gb" }, @@ -78841,7 +99390,10 @@ "plasmid_name": "pLEX307-mFzd1", "sequence-type": "addgene-full", "addgene_id": "102864", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "file": "data/addgene_plasmids/102864.addgene-full.gb" }, @@ -78850,7 +99402,10 @@ "plasmid_name": "MAC-CTSB", "sequence-type": "addgene-full", "addgene_id": "172413", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172413.addgene-full.gb" }, @@ -78859,7 +99414,10 @@ "plasmid_name": "pDONR223_OTUD6A_p.R171P", "sequence-type": "addgene-full", "addgene_id": "81287", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -78871,7 +99429,10 @@ "plasmid_name": "pDL110", "sequence-type": "addgene-full", "addgene_id": "175915", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175915.addgene-full.gb" }, @@ -78880,7 +99441,6 @@ "plasmid_name": "pENTR_Mm_CCNB1(WT)", "sequence-type": "addgene-full", "addgene_id": "136340", - "references": [], "kit": null, "file": "data/addgene_plasmids/136340.addgene-full.gb" }, @@ -78889,7 +99449,10 @@ "plasmid_name": "MAC_N_ARPC1B", "sequence-type": "addgene-full", "addgene_id": "111681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111681.addgene-full.gb" }, @@ -78898,7 +99461,10 @@ "plasmid_name": "pMuLE ENTR SV40 Luc2 (FF-Luciferase) L5-L2", "sequence-type": "depositor-full", "addgene_id": "62170", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62170.depositor-full.gb" }, @@ -78907,7 +99473,6 @@ "plasmid_name": "Fusion of Zika NS2B-NS3 proteins", "sequence-type": "addgene-full", "addgene_id": "204815", - "references": [], "kit": null, "file": "data/addgene_plasmids/204815.addgene-full.gb" }, @@ -78916,7 +99481,10 @@ "plasmid_name": "W118-1_hTGM1-Flag", "sequence-type": "addgene-full", "addgene_id": "180406", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180406.addgene-full.gb" }, @@ -78925,7 +99493,6 @@ "plasmid_name": "R777-E143 Hs.NFKB1", "sequence-type": "depositor-full", "addgene_id": "70427", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -78937,7 +99504,10 @@ "plasmid_name": "pAG425GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14394", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -78949,7 +99519,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp14", "sequence-type": "depositor-full", "addgene_id": "168960", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168960.depositor-full.gb" }, @@ -78958,7 +99531,10 @@ "plasmid_name": "pHAGE-GNAS", "sequence-type": "addgene-full", "addgene_id": "116748", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116748.addgene-full.gb" }, @@ -78967,7 +99543,10 @@ "plasmid_name": "LIIIbeta F E-F", "sequence-type": "depositor-full", "addgene_id": "54393", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54393.depositor-full.gb" }, @@ -78976,7 +99555,10 @@ "plasmid_name": "pCK052 p5E exorh:mCherry", "sequence-type": "addgene-full", "addgene_id": "195953", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195953.addgene-full.gb" }, @@ -78994,7 +99576,10 @@ "plasmid_name": "pDEST-APIC-LexAGAD", "sequence-type": "addgene-full", "addgene_id": "112807", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1707467114", + "https://www.ncbi.nlm.nih.gov/pubmed/28874572" + ], "kit": null, "file": "data/addgene_plasmids/112807.addgene-full.gb" }, @@ -79003,7 +99588,10 @@ "plasmid_name": "pDONR223_WIPI1_WT", "sequence-type": "addgene-full", "addgene_id": "82055", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -79015,7 +99603,10 @@ "plasmid_name": "pHPyV7-713a", "sequence-type": "depositor-full", "addgene_id": "24728", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2010.05.006", + "https://www.ncbi.nlm.nih.gov/pubmed/20542254" + ], "kit": null, "file": "data/addgene_plasmids/24728.depositor-full.gb" }, @@ -79024,7 +99615,10 @@ "plasmid_name": "pYPQ256-x3.7", "sequence-type": "addgene-full", "addgene_id": "124313", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "file": "data/addgene_plasmids/124313.addgene-full.gb" }, @@ -79033,7 +99627,10 @@ "plasmid_name": "HJP-176-IVS-Syn21-CreA-gp41-1N-WPREw", "sequence-type": "addgene-full", "addgene_id": "162470", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162470.addgene-full.gb" }, @@ -79042,7 +99639,6 @@ "plasmid_name": "p663-UBC-TurboID-V5-BRSK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135272", - "references": [], "kit": null, "file": "data/addgene_plasmids/135272.addgene-full.gb" }, @@ -79051,7 +99647,10 @@ "plasmid_name": "pSC6", "sequence-type": "addgene-full", "addgene_id": "104780", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104780.addgene-full.gb" }, @@ -79060,7 +99659,6 @@ "plasmid_name": "Hs.KRAS4b Q61H", "sequence-type": "depositor-full", "addgene_id": "83140", - "references": [], "kit": null, "file": "data/addgene_plasmids/83140.depositor-full.gb" }, @@ -79069,7 +99667,10 @@ "plasmid_name": "MSCV-LMP2A-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "220352", - "references": [], + "references": [ + "https://doi.org/10.3389/fimmu.2023.1331730", + "https://www.ncbi.nlm.nih.gov/pubmed/38169736" + ], "kit": null, "file": "data/addgene_plasmids/220352.addgene-full.gb" }, @@ -79078,7 +99679,6 @@ "plasmid_name": "pMx/ATP9A(E195Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209256", - "references": [], "kit": null, "file": "data/addgene_plasmids/209256.addgene-full.gb" }, @@ -79087,7 +99687,10 @@ "plasmid_name": "pTW324", "sequence-type": "addgene-full", "addgene_id": "115955", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115955.addgene-full.gb" }, @@ -79096,7 +99699,10 @@ "plasmid_name": "pAG415GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14169", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -79120,7 +99726,10 @@ "plasmid_name": "pLX307 ARHGAP30", "sequence-type": "addgene-full", "addgene_id": "117738", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117738.addgene-full.gb" }, @@ -79129,7 +99738,10 @@ "plasmid_name": "pENTR D-TOPO-C2_14", "sequence-type": "depositor-full", "addgene_id": "60253", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60253.depositor-full.gb" }, @@ -79138,7 +99750,10 @@ "plasmid_name": "pDONR221-SLC33A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161430", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161430.addgene-full.gb" }, @@ -79147,7 +99762,10 @@ "plasmid_name": "pDONR_P2R-P3_R2-Turbo-NES-mVenus-STOP-L3", "sequence-type": "addgene-full", "addgene_id": "127353", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127353.addgene-full.gb" }, @@ -79156,7 +99774,10 @@ "plasmid_name": "pDONR221_SLC39A12", "sequence-type": "addgene-full", "addgene_id": "132129", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132129.addgene-full.gb" }, @@ -79165,7 +99786,10 @@ "plasmid_name": "pWS2119", "sequence-type": "addgene-full", "addgene_id": "123048", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123048.addgene-full.gb" }, @@ -79174,7 +99798,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NN_G1333-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171728", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171728.addgene-full.gb" }, @@ -79183,7 +99810,10 @@ "plasmid_name": "Tol2-LyzC-RacFRET-U6ac-ctrl guides", "sequence-type": "addgene-full", "addgene_id": "168247", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258574", + "https://www.ncbi.nlm.nih.gov/pubmed/33722979" + ], "kit": null, "file": "data/addgene_plasmids/168247.addgene-full.gb" }, @@ -79192,7 +99822,10 @@ "plasmid_name": "pDONR223-GCK", "sequence-type": "addgene-full", "addgene_id": "23750", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -79204,7 +99837,10 @@ "plasmid_name": "pHAGE-PIK3CA-S332_L334delSAL", "sequence-type": "addgene-full", "addgene_id": "116541", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116541.addgene-full.gb" }, @@ -79213,7 +99849,9 @@ "plasmid_name": "pMpGWB331", "sequence-type": "depositor-full", "addgene_id": "68659", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68659.depositor-full.gb" }, @@ -79222,7 +99860,10 @@ "plasmid_name": "pMDJ15 - pEXP[Peft-3 | mCardinal (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159801", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159801.addgene-full.gb" }, @@ -79231,7 +99872,10 @@ "plasmid_name": "pENTR1a-MTS-jAspSnFR3", "sequence-type": "addgene-full", "addgene_id": "203461", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "file": "data/addgene_plasmids/203461.addgene-full.gb" }, @@ -79240,7 +99884,10 @@ "plasmid_name": "pInducer21-3xFlag-hMEFV-Q426R", "sequence-type": "addgene-full", "addgene_id": "195475", - "references": [], + "references": [ + "https://doi.org/10.1038/s41419-023-05745-9", + "https://www.ncbi.nlm.nih.gov/pubmed/36966139" + ], "kit": null, "file": "data/addgene_plasmids/195475.addgene-full.gb" }, @@ -79249,7 +99896,10 @@ "plasmid_name": "TFORF3513", "sequence-type": "depositor-full", "addgene_id": "144989", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144989.depositor-full.gb" }, @@ -79258,7 +99908,10 @@ "plasmid_name": "pDONR221-ZNF808", "sequence-type": "addgene-full", "addgene_id": "101470", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101470.addgene-full.gb" }, @@ -79267,7 +99920,10 @@ "plasmid_name": "pGEM-gate", "sequence-type": "addgene-full", "addgene_id": "113758", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -79279,7 +99935,10 @@ "plasmid_name": "pDONR221_SLC31A1", "sequence-type": "addgene-full", "addgene_id": "132252", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132252.addgene-full.gb" }, @@ -79288,7 +99947,10 @@ "plasmid_name": "pDONR221-SLC16A8_STOP", "sequence-type": "depositor-full", "addgene_id": "161125", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161125.depositor-full.gb" }, @@ -79297,7 +99959,10 @@ "plasmid_name": "pENTR-L3-Cas9-L2", "sequence-type": "addgene-full", "addgene_id": "141038", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141038.addgene-full.gb" }, @@ -79306,7 +99971,6 @@ "plasmid_name": "pLIX403-EBFP2-ccdB-Blast", "sequence-type": "addgene-full", "addgene_id": "158557", - "references": [], "kit": null, "file": "data/addgene_plasmids/158557.addgene-full.gb" }, @@ -79315,7 +99979,10 @@ "plasmid_name": "pENTR223-BaRF1(RNR-s)", "sequence-type": "addgene-full", "addgene_id": "195795", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195795.addgene-full.gb" }, @@ -79324,7 +99991,10 @@ "plasmid_name": "C514-E14: attB5r-RU5u-His6-Halotag-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162956", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -79336,7 +100006,10 @@ "plasmid_name": "GFP-MUTED", "sequence-type": "addgene-full", "addgene_id": "164629", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164629.addgene-full.gb" }, @@ -79345,7 +100018,10 @@ "plasmid_name": "pCellFree_G03 WAVE 2", "sequence-type": "addgene-full", "addgene_id": "67098", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "file": "data/addgene_plasmids/67098.addgene-full.gb" }, @@ -79354,7 +100030,10 @@ "plasmid_name": "pENTR223-BVRF1", "sequence-type": "addgene-full", "addgene_id": "195821", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195821.addgene-full.gb" }, @@ -79363,7 +100042,10 @@ "plasmid_name": "pDONR221-SLC5A9_STOP", "sequence-type": "depositor-full", "addgene_id": "161396", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161396.depositor-full.gb" }, @@ -79372,7 +100054,10 @@ "plasmid_name": "pDONR223_MAPK3_WT", "sequence-type": "addgene-full", "addgene_id": "82313", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82313.addgene-full.gb" }, @@ -79381,7 +100066,10 @@ "plasmid_name": "pMuLE ENTR CMV loxP L5-L2", "sequence-type": "depositor-full", "addgene_id": "62094", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62094.depositor-full.gb" }, @@ -79390,7 +100078,10 @@ "plasmid_name": "pAG423GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14270", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -79402,7 +100093,10 @@ "plasmid_name": "pDL189", "sequence-type": "addgene-full", "addgene_id": "175928", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175928.addgene-full.gb" }, @@ -79411,7 +100105,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-LC3B-GFP", "sequence-type": "addgene-full", "addgene_id": "123107", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123107.addgene-full.gb" }, @@ -79420,7 +100117,10 @@ "plasmid_name": "RET_Y981F-SHC", "sequence-type": "addgene-full", "addgene_id": "139621", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139621.addgene-full.gb" }, @@ -79429,7 +100129,10 @@ "plasmid_name": "pZA5", "sequence-type": "addgene-full", "addgene_id": "158483", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158483.addgene-full.gb" }, @@ -79438,7 +100141,10 @@ "plasmid_name": "pDONR221_SLC2A7", "sequence-type": "addgene-full", "addgene_id": "132066", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132066.addgene-full.gb" }, @@ -79447,7 +100153,6 @@ "plasmid_name": "pTwist-ENTR-MCP-ADAR2-DD(E488Q/T490A)-V5", "sequence-type": "addgene-full", "addgene_id": "192713", - "references": [], "kit": null, "file": "data/addgene_plasmids/192713.addgene-full.gb" }, @@ -79456,7 +100161,9 @@ "plasmid_name": "pMpGWB226", "sequence-type": "depositor-full", "addgene_id": "68617", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68617.depositor-full.gb" }, @@ -79465,7 +100172,10 @@ "plasmid_name": "pMpGWB102-Citrine-NLS", "sequence-type": "depositor-full", "addgene_id": "79136", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "file": "data/addgene_plasmids/79136.depositor-full.gb" }, @@ -79474,7 +100184,10 @@ "plasmid_name": "R725-X09-635: His6-tev-Hs.SPRED1(13-125)", "sequence-type": "addgene-full", "addgene_id": "159581", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.107909", + "https://www.ncbi.nlm.nih.gov/pubmed/32697994" + ], "kit": null, "file": "data/addgene_plasmids/159581.addgene-full.gb" }, @@ -79483,7 +100196,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-H2B-mCherry (gRNA: Neurog2-3)", "sequence-type": "addgene-full", "addgene_id": "159661", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/159661.addgene-full.gb" }, @@ -79492,7 +100208,10 @@ "plasmid_name": "pDONR223_NBPF15_WT", "sequence-type": "addgene-full", "addgene_id": "82068", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -79504,7 +100223,10 @@ "plasmid_name": "pCx55.5-TrpR", "sequence-type": "addgene-full", "addgene_id": "86373", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms10590", + "https://www.ncbi.nlm.nih.gov/pubmed/26838932" + ], "kit": null, "file": "data/addgene_plasmids/86373.addgene-full.gb" }, @@ -79513,7 +100235,10 @@ "plasmid_name": "pDONR223-EPHB1", "sequence-type": "addgene-full", "addgene_id": "23930", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -79525,7 +100250,10 @@ "plasmid_name": "pHAGE-PIK3CA-G118D", "sequence-type": "addgene-full", "addgene_id": "116495", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116495.addgene-full.gb" }, @@ -79534,7 +100262,10 @@ "plasmid_name": "pZHY051", "sequence-type": "depositor-full", "addgene_id": "44987", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.205179", + "https://www.ncbi.nlm.nih.gov/pubmed/23124327" + ], "kit": null, "file": "data/addgene_plasmids/44987.depositor-full.gb" }, @@ -79543,7 +100274,10 @@ "plasmid_name": "pME-p3E-HyPer7", "sequence-type": "addgene-full", "addgene_id": "194289", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "file": "data/addgene_plasmids/194289.addgene-full.gb" }, @@ -79552,7 +100286,10 @@ "plasmid_name": "LA501: pMVP (L3-L2) P2A-Neo + WPRE", "sequence-type": "addgene-full", "addgene_id": "121786", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121786.addgene-full.gb" }, @@ -79561,7 +100298,10 @@ "plasmid_name": "KO001: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS-p300core", "sequence-type": "addgene-full", "addgene_id": "121832", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121832.addgene-full.gb" }, @@ -79570,7 +100310,10 @@ "plasmid_name": "pL106P-LUC-ENTR1A(w451-1)", "sequence-type": "depositor-full", "addgene_id": "17455", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17455.depositor-full.gb" }, @@ -79579,7 +100322,10 @@ "plasmid_name": "pYPQ223-STU", "sequence-type": "addgene-full", "addgene_id": "138109", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138109.addgene-full.gb" }, @@ -79588,7 +100334,9 @@ "plasmid_name": "pPB-cT3G-cERP2-PAX5", "sequence-type": "addgene-full", "addgene_id": "222575", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222575.addgene-full.gb" }, @@ -79597,7 +100345,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP12_nostop", "sequence-type": "addgene-full", "addgene_id": "168659", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168659.addgene-full.gb" }, @@ -79606,7 +100357,10 @@ "plasmid_name": "gp64-mVEGF-C-HisTag-pENTR", "sequence-type": "depositor-full", "addgene_id": "64065", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2015.03.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25758709" + ], "kit": null, "file": "data/addgene_plasmids/64065.depositor-full.gb" }, @@ -79615,7 +100369,10 @@ "plasmid_name": "pAG424GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14344", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -79627,7 +100384,6 @@ "plasmid_name": "pCM1.120", "sequence-type": "depositor-full", "addgene_id": "19600", - "references": [], "kit": null, "file": "data/addgene_plasmids/19600.depositor-full.gb" }, @@ -79636,7 +100392,10 @@ "plasmid_name": "BTG1", "sequence-type": "addgene-full", "addgene_id": "155425", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155425.addgene-full.gb" }, @@ -79645,7 +100404,10 @@ "plasmid_name": "pMM2_9", "sequence-type": "addgene-full", "addgene_id": "183058", - "references": [], + "references": [ + "https://doi.org/10.1093/femsyr/foab049", + "https://www.ncbi.nlm.nih.gov/pubmed/34477863" + ], "kit": null, "file": "data/addgene_plasmids/183058.addgene-full.gb" }, @@ -79654,7 +100416,10 @@ "plasmid_name": "TFORF3068", "sequence-type": "addgene-full", "addgene_id": "144544", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144544.addgene-full.gb" }, @@ -79663,7 +100428,9 @@ "plasmid_name": "pDONR221-SCARB2(v2)", "sequence-type": "addgene-full", "addgene_id": "166207", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166207.addgene-full.gb" }, @@ -79672,7 +100439,10 @@ "plasmid_name": "pDONR221-SLC39A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161355", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161355.addgene-full.gb" }, @@ -79681,7 +100451,9 @@ "plasmid_name": "pME EFS-rtTA/rtTA3 (JDW 1230)", "sequence-type": "addgene-full", "addgene_id": "224525", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224525.addgene-full.gb" }, @@ -79690,7 +100462,10 @@ "plasmid_name": "MultiMate 5 colors", "sequence-type": "addgene-full", "addgene_id": "206266", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206266.addgene-full.gb" }, @@ -79699,7 +100474,10 @@ "plasmid_name": "pDONR223_NFE2L2_WT", "sequence-type": "addgene-full", "addgene_id": "81770", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -79723,7 +100501,10 @@ "plasmid_name": "pDR3.10", "sequence-type": "depositor-full", "addgene_id": "19367", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19367.depositor-full.gb" }, @@ -79732,7 +100513,10 @@ "plasmid_name": "pDONR223_GALNT14_p.P484S", "sequence-type": "addgene-full", "addgene_id": "81490", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -79744,7 +100528,6 @@ "plasmid_name": "pAM-PAT-ProATE1 GW", "sequence-type": "depositor-full", "addgene_id": "80681", - "references": [], "kit": null, "file": "data/addgene_plasmids/80681.depositor-full.gb" }, @@ -79753,7 +100536,10 @@ "plasmid_name": "pLVX-HA-UBE3B-IRES-Puro", "sequence-type": "addgene-full", "addgene_id": "107345", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "file": "data/addgene_plasmids/107345.addgene-full.gb" }, @@ -79762,7 +100548,10 @@ "plasmid_name": "TFORF3434", "sequence-type": "addgene-full", "addgene_id": "144910", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144910.addgene-full.gb" }, @@ -79771,7 +100560,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP6_nostop", "sequence-type": "addgene-full", "addgene_id": "168522", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168522.addgene-full.gb" }, @@ -79780,7 +100572,10 @@ "plasmid_name": "pDONR221-SLC29A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161281", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161281.addgene-full.gb" }, @@ -79789,7 +100584,10 @@ "plasmid_name": "5'-3xFLAG Gatad2a-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212051", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212051.addgene-full.gb" }, @@ -79798,7 +100596,6 @@ "plasmid_name": "mOrange in pBSDONR P4r-P2", "sequence-type": "addgene-full", "addgene_id": "121529", - "references": [], "kit": null, "file": "data/addgene_plasmids/121529.addgene-full.gb" }, @@ -79807,7 +100604,10 @@ "plasmid_name": "TFORF3014", "sequence-type": "addgene-full", "addgene_id": "144490", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144490.addgene-full.gb" }, @@ -79816,7 +100616,10 @@ "plasmid_name": "pDOCKING-Neo", "sequence-type": "depositor-full", "addgene_id": "31441", - "references": [], + "references": [ + "https://doi.org/10.1186/1756-0500-4-420", + "https://www.ncbi.nlm.nih.gov/pubmed/22008483" + ], "kit": null, "file": "data/addgene_plasmids/31441.depositor-full.gb" }, @@ -79825,7 +100628,6 @@ "plasmid_name": "R777-E039 Hs.DUSP4", "sequence-type": "depositor-full", "addgene_id": "70323", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -79837,7 +100639,10 @@ "plasmid_name": "TFORF3294", "sequence-type": "addgene-full", "addgene_id": "144770", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144770.addgene-full.gb" }, @@ -79846,7 +100651,10 @@ "plasmid_name": "actc1b-mKate2-rab6bb", "sequence-type": "addgene-full", "addgene_id": "109654", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109654.addgene-full.gb" }, @@ -79855,7 +100663,10 @@ "plasmid_name": "pDONR221_SLC18A1", "sequence-type": "addgene-full", "addgene_id": "131985", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131985.addgene-full.gb" }, @@ -79864,7 +100675,10 @@ "plasmid_name": "pLenti CRISPR sgSHMT2_1", "sequence-type": "addgene-full", "addgene_id": "106308", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106308.addgene-full.gb" }, @@ -79873,7 +100687,10 @@ "plasmid_name": "pDONR221-SLC25A48_STOP", "sequence-type": "addgene-full", "addgene_id": "161161", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161161.addgene-full.gb" }, @@ -79882,7 +100699,10 @@ "plasmid_name": "pGWB418", "sequence-type": "depositor-full", "addgene_id": "74812", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74812.depositor-full.gb" }, @@ -79891,7 +100711,10 @@ "plasmid_name": "pDONR223_ZBTB24_p.K123M", "sequence-type": "addgene-full", "addgene_id": "82796", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82796.addgene-full.gb" }, @@ -79900,7 +100723,10 @@ "plasmid_name": "pDONR223_BRAF_p.L613F", "sequence-type": "addgene-full", "addgene_id": "82822", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82822.addgene-full.gb" }, @@ -79909,7 +100735,10 @@ "plasmid_name": "pLenti-CMV-Blast-DNFGFR1-HA", "sequence-type": "addgene-full", "addgene_id": "130887", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.07.092", + "https://www.ncbi.nlm.nih.gov/pubmed/31461652" + ], "kit": null, "file": "data/addgene_plasmids/130887.addgene-full.gb" }, @@ -79918,7 +100747,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-H2B-mCherry (dual gRNA: Otx2 x2)", "sequence-type": "addgene-full", "addgene_id": "171102", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/171102.addgene-full.gb" }, @@ -79927,7 +100759,10 @@ "plasmid_name": "pDEST-N2H-C1", "sequence-type": "addgene-full", "addgene_id": "125549", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11809-2", + "https://www.ncbi.nlm.nih.gov/pubmed/31467278" + ], "kit": null, "file": "data/addgene_plasmids/125549.addgene-full.gb" }, @@ -79936,7 +100771,10 @@ "plasmid_name": "pLenti_EF1a_Flag_EGFP", "sequence-type": "addgene-full", "addgene_id": "183117", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "file": "data/addgene_plasmids/183117.addgene-full.gb" }, @@ -79945,7 +100783,9 @@ "plasmid_name": "pMpGWB136", "sequence-type": "depositor-full", "addgene_id": "68590", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68590.depositor-full.gb" }, @@ -79954,7 +100794,6 @@ "plasmid_name": "pDEST-Spe4-RfA-Snaptag-stop", "sequence-type": "addgene-full", "addgene_id": "186395", - "references": [], "kit": null, "file": "data/addgene_plasmids/186395.addgene-full.gb" }, @@ -79963,7 +100802,10 @@ "plasmid_name": "pBS L30 Ruby3-Rab7A", "sequence-type": "addgene-full", "addgene_id": "135651", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.aba7803", + "https://www.ncbi.nlm.nih.gov/pubmed/33523982" + ], "kit": null, "file": "data/addgene_plasmids/135651.addgene-full.gb" }, @@ -79972,7 +100814,10 @@ "plasmid_name": "pDONR221-kcnj5", "sequence-type": "addgene-full", "addgene_id": "173132", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173132.addgene-full.gb" }, @@ -79981,7 +100826,6 @@ "plasmid_name": "R777-E360 Hs.YAP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70644", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -79993,7 +100837,10 @@ "plasmid_name": "pHL-EF1a-SphcCas9(D10A)-iP-A", "sequence-type": "depositor-full", "addgene_id": "60600", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.013", + "https://www.ncbi.nlm.nih.gov/pubmed/25434822" + ], "kit": null, "file": "data/addgene_plasmids/60600.depositor-full.gb" }, @@ -80002,7 +100849,10 @@ "plasmid_name": "MED12_pLX307", "sequence-type": "addgene-full", "addgene_id": "98350", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98350.addgene-full.gb" }, @@ -80011,7 +100861,10 @@ "plasmid_name": "NAP1L3", "sequence-type": "addgene-full", "addgene_id": "155763", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155763.addgene-full.gb" }, @@ -80020,7 +100873,10 @@ "plasmid_name": "pAC1814_pCR8-gSMN2-DN2", "sequence-type": "addgene-full", "addgene_id": "118647", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118647.addgene-full.gb" }, @@ -80029,7 +100885,10 @@ "plasmid_name": "p3E-rab8b", "sequence-type": "addgene-full", "addgene_id": "109726", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109726.addgene-full.gb" }, @@ -80038,7 +100897,6 @@ "plasmid_name": "R777-E005 Hs.AKT3", "sequence-type": "depositor-full", "addgene_id": "70289", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -80050,7 +100908,10 @@ "plasmid_name": "TFORF3126", "sequence-type": "addgene-full", "addgene_id": "144602", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144602.addgene-full.gb" }, @@ -80059,7 +100920,9 @@ "plasmid_name": "pAG416GAL-mRuby3", "sequence-type": "addgene-full", "addgene_id": "166141", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166141.addgene-full.gb" }, @@ -80068,7 +100931,10 @@ "plasmid_name": "pHAGE-EGFR-P546S", "sequence-type": "addgene-full", "addgene_id": "116282", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116282.addgene-full.gb" }, @@ -80077,7 +100943,10 @@ "plasmid_name": "pDONR223_CYP3A5_p.G177R", "sequence-type": "addgene-full", "addgene_id": "81436", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -80089,7 +100958,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TSSK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189894", - "references": [], "kit": null, "file": "data/addgene_plasmids/189894.addgene-full.gb" }, @@ -80098,7 +100966,9 @@ "plasmid_name": "pPB-cT3G-cERP2-DMRTC2", "sequence-type": "addgene-full", "addgene_id": "222548", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222548.addgene-full.gb" }, @@ -80107,7 +100977,10 @@ "plasmid_name": "p{3P3-eGFP::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182167", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182167.addgene-full.gb" }, @@ -80116,7 +100989,10 @@ "plasmid_name": "pDONR223_MAGEC2_WT", "sequence-type": "addgene-full", "addgene_id": "81862", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -80128,7 +101004,10 @@ "plasmid_name": "p7058 pHAGE-P-CMVt-N-HA-GAW-FDFT1", "sequence-type": "addgene-full", "addgene_id": "100151", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100151.addgene-full.gb" }, @@ -80137,7 +101016,10 @@ "plasmid_name": "pHAGE-BRAF-G69S", "sequence-type": "addgene-full", "addgene_id": "116162", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116162.addgene-full.gb" }, @@ -80146,7 +101028,6 @@ "plasmid_name": "pVP16-tev-PRT1-V28A", "sequence-type": "addgene-full", "addgene_id": "83406", - "references": [], "kit": null, "file": "data/addgene_plasmids/83406.addgene-full.gb" }, @@ -80155,7 +101036,10 @@ "plasmid_name": "CRABP2", "sequence-type": "addgene-full", "addgene_id": "155483", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155483.addgene-full.gb" }, @@ -80164,7 +101048,10 @@ "plasmid_name": "pLenti-CMV-PM", "sequence-type": "addgene-full", "addgene_id": "197386", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-023-01130-y", + "https://www.ncbi.nlm.nih.gov/pubmed/37106062" + ], "kit": null, "file": "data/addgene_plasmids/197386.addgene-full.gb" }, @@ -80173,7 +101060,10 @@ "plasmid_name": "pMULTIrec", "sequence-type": "depositor-full", "addgene_id": "43959", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0062054", + "https://www.ncbi.nlm.nih.gov/pubmed/23637962" + ], "kit": null, "file": "data/addgene_plasmids/43959.depositor-full.gb" }, @@ -80182,7 +101072,6 @@ "plasmid_name": "L5-LexAp65-L2", "sequence-type": "depositor-full", "addgene_id": "41437", - "references": [], "kit": null, "file": "data/addgene_plasmids/41437.depositor-full.gb" }, @@ -80203,7 +101092,10 @@ "plasmid_name": "pFRT-TODestFLAGHAhFXR1", "sequence-type": "addgene-full", "addgene_id": "48694", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11737", + "https://www.ncbi.nlm.nih.gov/pubmed/23235829" + ], "kit": null, "file": "data/addgene_plasmids/48694.addgene-full.gb" }, @@ -80212,7 +101104,10 @@ "plasmid_name": "pDONR221-SLC43A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161368", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161368.addgene-full.gb" }, @@ -80221,7 +101116,10 @@ "plasmid_name": "slc1a3b:myrGCaMP6s-P2A-H2AmCherry", "sequence-type": "addgene-full", "addgene_id": "170209", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-020-0703-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32895565" + ], "kit": null, "file": "data/addgene_plasmids/170209.addgene-full.gb" }, @@ -80230,7 +101128,9 @@ "plasmid_name": "pME-mTurquoise-P2A-iCre (JDW 920)", "sequence-type": "addgene-full", "addgene_id": "224518", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224518.addgene-full.gb" }, @@ -80239,7 +101139,10 @@ "plasmid_name": "pMSCVpuro-DEST", "sequence-type": "addgene-full", "addgene_id": "119745", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.201798506", + "https://www.ncbi.nlm.nih.gov/pubmed/29959219" + ], "kit": null, "file": "data/addgene_plasmids/119745.addgene-full.gb" }, @@ -80248,7 +101151,10 @@ "plasmid_name": "pDONR221-SLC15A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161088", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161088.addgene-full.gb" }, @@ -80257,7 +101163,10 @@ "plasmid_name": "pDONR223_PSMD9_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82950", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82950.addgene-full.gb" }, @@ -80266,7 +101175,10 @@ "plasmid_name": "II901: pMVP (L5-L4) FKBP DD", "sequence-type": "addgene-full", "addgene_id": "121720", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121720.addgene-full.gb" }, @@ -80275,7 +101187,10 @@ "plasmid_name": "pLenti6.2_3xFLAG_V5_ eGFP_V5", "sequence-type": "addgene-full", "addgene_id": "160111", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160111.addgene-full.gb" }, @@ -80284,7 +101199,10 @@ "plasmid_name": "TFORF3223", "sequence-type": "addgene-full", "addgene_id": "144699", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144699.addgene-full.gb" }, @@ -80293,7 +101211,10 @@ "plasmid_name": "pHAGE-CDKN2A-A100S", "sequence-type": "addgene-full", "addgene_id": "116219", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116219.addgene-full.gb" }, @@ -80302,7 +101223,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK17_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158174", - "references": [], "kit": null, "file": "data/addgene_plasmids/158174.addgene-full.gb" }, @@ -80311,7 +101231,10 @@ "plasmid_name": "plenti-UbcP-HA-CRBN-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107378", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107378.addgene-full.gb" }, @@ -80320,7 +101243,10 @@ "plasmid_name": "pBi2FC-C-GW-P2A:mTagBFP2", "sequence-type": "addgene-full", "addgene_id": "216143", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216143.addgene-full.gb" }, @@ -80329,7 +101255,6 @@ "plasmid_name": "pTRIPZ-NUDT17-C-HA-Puro", "sequence-type": "addgene-full", "addgene_id": "195182", - "references": [], "kit": null, "file": "data/addgene_plasmids/195182.addgene-full.gb" }, @@ -80338,7 +101263,10 @@ "plasmid_name": "pDONR223_MEF2C_p.T9M", "sequence-type": "addgene-full", "addgene_id": "81699", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -80350,7 +101278,10 @@ "plasmid_name": "pLentiCMVNeoDEST(705-1)-hAXL", "sequence-type": "addgene-full", "addgene_id": "124796", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0718", + "https://www.ncbi.nlm.nih.gov/pubmed/30291220" + ], "kit": null, "file": "data/addgene_plasmids/124796.addgene-full.gb" }, @@ -80359,7 +101290,10 @@ "plasmid_name": "pCellFree_G10", "sequence-type": "depositor-full", "addgene_id": "67144", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "file": "data/addgene_plasmids/67144.depositor-full.gb" }, @@ -80368,7 +101302,10 @@ "plasmid_name": "p3E-ARF1", "sequence-type": "addgene-full", "addgene_id": "109589", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109589.addgene-full.gb" }, @@ -80377,7 +101314,10 @@ "plasmid_name": "p3E-rab14l", "sequence-type": "addgene-full", "addgene_id": "109669", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109669.addgene-full.gb" }, @@ -80386,7 +101326,10 @@ "plasmid_name": "pJW4.27", "sequence-type": "depositor-full", "addgene_id": "62877", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62877.depositor-full.gb" }, @@ -80395,7 +101338,10 @@ "plasmid_name": "pSLIK 3xFLAG-KPNA2 zeo", "sequence-type": "addgene-full", "addgene_id": "192330", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192330.addgene-full.gb" }, @@ -80404,7 +101350,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 S 24nt-del_nostop", "sequence-type": "addgene-full", "addgene_id": "153953", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153953.addgene-full.gb" }, @@ -80413,7 +101362,10 @@ "plasmid_name": "pDONR223 NRF2", "sequence-type": "addgene-full", "addgene_id": "118708", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.042", + "https://www.ncbi.nlm.nih.gov/pubmed/27368101" + ], "kit": null, "file": "data/addgene_plasmids/118708.addgene-full.gb" }, @@ -80422,7 +101374,6 @@ "plasmid_name": "pHAGE mCherry-Rab25", "sequence-type": "addgene-full", "addgene_id": "228039", - "references": [], "kit": null, "file": "data/addgene_plasmids/228039.addgene-full.gb" }, @@ -80431,7 +101382,10 @@ "plasmid_name": "pLD-puro-Cc-PARK7C53A-VA", "sequence-type": "addgene-full", "addgene_id": "115184", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115184.addgene-full.gb" }, @@ -80440,7 +101394,10 @@ "plasmid_name": "pDONR223_DOK1_WT", "sequence-type": "addgene-full", "addgene_id": "82884", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82884.addgene-full.gb" }, @@ -80449,7 +101406,10 @@ "plasmid_name": "pDONR223_WBSCR17_p.D348N", "sequence-type": "addgene-full", "addgene_id": "81579", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -80461,7 +101421,9 @@ "plasmid_name": "pMpGWB424", "sequence-type": "depositor-full", "addgene_id": "68689", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68689.depositor-full.gb" }, @@ -80470,7 +101432,10 @@ "plasmid_name": "pEXPqcxip-hSURF4-FLAG", "sequence-type": "addgene-full", "addgene_id": "159139", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2011.06.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21903422" + ], "kit": null, "file": "data/addgene_plasmids/159139.addgene-full.gb" }, @@ -80479,7 +101444,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep70", "sequence-type": "addgene-full", "addgene_id": "136871", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136871.addgene-full.gb" }, @@ -80488,7 +101456,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-C-mEYFP", "sequence-type": "addgene-full", "addgene_id": "223951", - "references": [], "kit": null, "file": "data/addgene_plasmids/223951.addgene-full.gb" }, @@ -80497,7 +101464,10 @@ "plasmid_name": "pDONR221_SLC16A5", "sequence-type": "addgene-full", "addgene_id": "131923", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131923.addgene-full.gb" }, @@ -80506,7 +101476,6 @@ "plasmid_name": "pLenti6.3/NS1", "sequence-type": "addgene-full", "addgene_id": "120842", - "references": [], "kit": null, "file": "data/addgene_plasmids/120842.addgene-full.gb" }, @@ -80515,7 +101484,10 @@ "plasmid_name": "TFORF3386", "sequence-type": "addgene-full", "addgene_id": "144862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144862.addgene-full.gb" }, @@ -80524,7 +101496,10 @@ "plasmid_name": "pcDNA3_DRD1-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194360", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194360.addgene-full.gb" }, @@ -80533,7 +101508,6 @@ "plasmid_name": "Ad-EEF1D-S133E", "sequence-type": "addgene-full", "addgene_id": "131577", - "references": [], "kit": null, "file": "data/addgene_plasmids/131577.addgene-full.gb" }, @@ -80542,7 +101516,10 @@ "plasmid_name": "pDONR-IAA1_no stop", "sequence-type": "depositor-full", "addgene_id": "83847", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83847.depositor-full.gb" }, @@ -80551,7 +101528,10 @@ "plasmid_name": "p1177-X1-8", "sequence-type": "depositor-full", "addgene_id": "38150", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2010.11.005", + "https://www.ncbi.nlm.nih.gov/pubmed/21073956" + ], "kit": null, "file": "data/addgene_plasmids/38150.depositor-full.gb" }, @@ -80560,7 +101540,10 @@ "plasmid_name": "actc1b-mKate2-EHD1a", "sequence-type": "addgene-full", "addgene_id": "109512", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109512.addgene-full.gb" }, @@ -80569,7 +101552,10 @@ "plasmid_name": "TFORF2960", "sequence-type": "addgene-full", "addgene_id": "144436", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144436.addgene-full.gb" }, @@ -80578,7 +101564,10 @@ "plasmid_name": "pGL3-MTS-G3635A-R16-Q2L7-T2176C-UGI-Puro", "sequence-type": "addgene-full", "addgene_id": "209648", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-42359-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37857619" + ], "kit": null, "file": "data/addgene_plasmids/209648.addgene-full.gb" }, @@ -80587,7 +101576,10 @@ "plasmid_name": "pDONR223_PIK3CB_p.A593V", "sequence-type": "addgene-full", "addgene_id": "81602", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -80599,7 +101591,10 @@ "plasmid_name": "p3E-MCS", "sequence-type": "depositor-full", "addgene_id": "75174", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -80611,7 +101606,10 @@ "plasmid_name": "pDONR221-SLC35G1_STOP", "sequence-type": "addgene-full", "addgene_id": "161227", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161227.addgene-full.gb" }, @@ -80620,7 +101618,6 @@ "plasmid_name": "pLEX307-FURIN-G418", "sequence-type": "addgene-full", "addgene_id": "158462", - "references": [], "kit": null, "file": "data/addgene_plasmids/158462.addgene-full.gb" }, @@ -80629,7 +101626,10 @@ "plasmid_name": "pAcBac1-Mb-sfGFP 150TAG", "sequence-type": "addgene-full", "addgene_id": "197570", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.2c00639", + "https://www.ncbi.nlm.nih.gov/pubmed/36383641" + ], "kit": null, "file": "data/addgene_plasmids/197570.addgene-full.gb" }, @@ -80638,7 +101638,10 @@ "plasmid_name": "pDONR221_SLC35B3", "sequence-type": "addgene-full", "addgene_id": "132087", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132087.addgene-full.gb" }, @@ -80647,7 +101650,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::HA-RfA", "sequence-type": "addgene-full", "addgene_id": "186411", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186411.addgene-full.gb" }, @@ -80656,7 +101662,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-92a-1", "sequence-type": "depositor-full", "addgene_id": "46672", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46672.depositor-full.gb" }, @@ -80665,7 +101674,10 @@ "plasmid_name": "pJH161_pE12_HyPep_mRuby", "sequence-type": "addgene-full", "addgene_id": "160407", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160407.addgene-full.gb" }, @@ -80674,7 +101686,10 @@ "plasmid_name": "pEF.DEST51-mScarlet", "sequence-type": "addgene-full", "addgene_id": "207960", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2304288120", + "https://www.ncbi.nlm.nih.gov/pubmed/37844244" + ], "kit": null, "file": "data/addgene_plasmids/207960.addgene-full.gb" }, @@ -80683,7 +101698,10 @@ "plasmid_name": "pCAG/ATP8B3-HA", "sequence-type": "addgene-full", "addgene_id": "209211", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209211.addgene-full.gb" }, @@ -80692,7 +101710,10 @@ "plasmid_name": "pDONR223 LC3B G120A no-stop", "sequence-type": "addgene-full", "addgene_id": "123206", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123206.addgene-full.gb" }, @@ -80701,7 +101722,10 @@ "plasmid_name": "pDestTol2CG2-U6:gRNA", "sequence-type": "addgene-full", "addgene_id": "63156", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.01.032", + "https://www.ncbi.nlm.nih.gov/pubmed/25752963" + ], "kit": null, "file": "data/addgene_plasmids/63156.addgene-full.gb" }, @@ -80710,7 +101734,6 @@ "plasmid_name": "pSMPUW_6.5_M2_Ef1a-V5-gateway", "sequence-type": "addgene-full", "addgene_id": "128441", - "references": [], "kit": null, "file": "data/addgene_plasmids/128441.addgene-full.gb" }, @@ -80719,7 +101742,6 @@ "plasmid_name": "pDEST-EB-Hyg-R4R3", "sequence-type": "addgene-full", "addgene_id": "139520", - "references": [], "kit": null, "file": "data/addgene_plasmids/139520.addgene-full.gb" }, @@ -80728,7 +101750,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK19_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214465", - "references": [], "kit": null, "file": "data/addgene_plasmids/214465.addgene-full.gb" }, @@ -80737,7 +101758,10 @@ "plasmid_name": "pME mKate2-dynactin1-811", "sequence-type": "addgene-full", "addgene_id": "105971", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21206", + "https://www.ncbi.nlm.nih.gov/pubmed/26879757" + ], "kit": null, "file": "data/addgene_plasmids/105971.addgene-full.gb" }, @@ -80746,7 +101770,10 @@ "plasmid_name": "pDONR223_AKT1_p.E17K", "sequence-type": "addgene-full", "addgene_id": "82089", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -80758,7 +101785,10 @@ "plasmid_name": "TFORF3541", "sequence-type": "depositor-full", "addgene_id": "145017", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145017.depositor-full.gb" }, @@ -80767,7 +101797,10 @@ "plasmid_name": "PB-CT3G-ERP2-MG-IRES2-mNeonGreen", "sequence-type": "addgene-full", "addgene_id": "175506", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175506.addgene-full.gb" }, @@ -80776,7 +101809,10 @@ "plasmid_name": "R713-M85-303: CMV51p> Halotag-Hs.KRAS4a", "sequence-type": "addgene-full", "addgene_id": "159680", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "file": "data/addgene_plasmids/159680.addgene-full.gb" }, @@ -80785,7 +101821,10 @@ "plasmid_name": "pDONR223-LATS1", "sequence-type": "addgene-full", "addgene_id": "23665", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -80797,7 +101836,10 @@ "plasmid_name": "pLEX307-EF1a-ChR2[H134R]-mCherry-Puro-WPRE", "sequence-type": "addgene-full", "addgene_id": "125256", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.aat5847", + "https://www.ncbi.nlm.nih.gov/pubmed/30324134" + ], "kit": null, "file": "data/addgene_plasmids/125256.addgene-full.gb" }, @@ -80806,7 +101848,10 @@ "plasmid_name": "pDONR221-Ckb2", "sequence-type": "addgene-full", "addgene_id": "99982", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99982.addgene-full.gb" }, @@ -80815,7 +101860,10 @@ "plasmid_name": "pAC150-TEX264\u0394LIR-GFP", "sequence-type": "addgene-full", "addgene_id": "201930", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "file": "data/addgene_plasmids/201930.addgene-full.gb" }, @@ -80824,7 +101872,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 ORF7A", "sequence-type": "addgene-full", "addgene_id": "141276", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141276.addgene-full.gb" }, @@ -80833,7 +101884,6 @@ "plasmid_name": "R777-E207 Hs.RAC1", "sequence-type": "depositor-full", "addgene_id": "70491", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -80845,7 +101895,10 @@ "plasmid_name": "pHAGE-STK11", "sequence-type": "addgene-full", "addgene_id": "116794", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116794.addgene-full.gb" }, @@ -80854,7 +101907,10 @@ "plasmid_name": "pAG425GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14322", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -80866,7 +101922,10 @@ "plasmid_name": "pHAGE-GSK3A__ZNF564", "sequence-type": "addgene-full", "addgene_id": "116820", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116820.addgene-full.gb" }, @@ -80875,7 +101934,10 @@ "plasmid_name": "pLENTI EF1alpha FLAG/HA-LCOR", "sequence-type": "addgene-full", "addgene_id": "114444", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "file": "data/addgene_plasmids/114444.addgene-full.gb" }, @@ -80884,7 +101946,10 @@ "plasmid_name": "pYPQ265O1", "sequence-type": "addgene-full", "addgene_id": "173999", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "file": "data/addgene_plasmids/173999.addgene-full.gb" }, @@ -80893,7 +101958,10 @@ "plasmid_name": "R701-X52-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169)", "sequence-type": "addgene-full", "addgene_id": "159560", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159560.addgene-full.gb" }, @@ -80902,7 +101970,10 @@ "plasmid_name": "pcDNA5/FRT/TO/TARG1", "sequence-type": "addgene-full", "addgene_id": "172580", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172580.addgene-full.gb" }, @@ -80911,7 +101982,10 @@ "plasmid_name": "pDONR221_SLC50A1", "sequence-type": "addgene-full", "addgene_id": "132228", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132228.addgene-full.gb" }, @@ -80920,7 +101994,10 @@ "plasmid_name": "pDest-665 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161885", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -80932,7 +102009,10 @@ "plasmid_name": "pDONR223_CD3E_p.E189Q", "sequence-type": "addgene-full", "addgene_id": "81314", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -80944,7 +102024,6 @@ "plasmid_name": "R777-E338 Hs.STK3-nostop", "sequence-type": "depositor-full", "addgene_id": "70622", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -80956,7 +102035,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV C", "sequence-type": "addgene-full", "addgene_id": "145359", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145359.addgene-full.gb" }, @@ -80965,7 +102047,10 @@ "plasmid_name": "pDESTN-MTp-p53-Venus", "sequence-type": "depositor-full", "addgene_id": "53736", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2008.03.016", + "https://www.ncbi.nlm.nih.gov/pubmed/18471974" + ], "kit": null, "file": "data/addgene_plasmids/53736.depositor-full.gb" }, @@ -80974,7 +102059,10 @@ "plasmid_name": "pJEP227-Lenti-CMV-GFP-GluN2A-WPRE-pA", "sequence-type": "addgene-full", "addgene_id": "84276", - "references": [], + "references": [ + "https://doi.org/10.1186/s13041-015-0100-7", + "https://www.ncbi.nlm.nih.gov/pubmed/25887710" + ], "kit": null, "file": "data/addgene_plasmids/84276.addgene-full.gb" }, @@ -80983,7 +102071,10 @@ "plasmid_name": "PB-Lmo2", "sequence-type": "depositor-full", "addgene_id": "60666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "file": "data/addgene_plasmids/60666.depositor-full.gb" }, @@ -80992,7 +102083,10 @@ "plasmid_name": "pDL64", "sequence-type": "addgene-full", "addgene_id": "175886", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175886.addgene-full.gb" }, @@ -81001,7 +102095,10 @@ "plasmid_name": "pAG414GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14191", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -81013,7 +102110,10 @@ "plasmid_name": "pDONR223-ZNF132", "sequence-type": "addgene-full", "addgene_id": "88563", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88563.addgene-full.gb" }, @@ -81022,7 +102122,10 @@ "plasmid_name": "pENTR-L3-Csy4-FokI-dCas9-L2", "sequence-type": "addgene-full", "addgene_id": "141042", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141042.addgene-full.gb" }, @@ -81031,7 +102134,10 @@ "plasmid_name": "pHAGE-PTPN11-E139D", "sequence-type": "addgene-full", "addgene_id": "116640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116640.addgene-full.gb" }, @@ -81040,7 +102146,10 @@ "plasmid_name": "AAEL017335 CAPA R", "sequence-type": "addgene-full", "addgene_id": "115409", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115409.addgene-full.gb" }, @@ -81049,7 +102158,10 @@ "plasmid_name": "pPB-cT3G-cERP2-KLF6", "sequence-type": "addgene-full", "addgene_id": "192909", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192909.addgene-full.gb" }, @@ -81058,7 +102170,10 @@ "plasmid_name": "pDONR221_SLC39A6", "sequence-type": "addgene-full", "addgene_id": "132153", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132153.addgene-full.gb" }, @@ -81067,7 +102182,10 @@ "plasmid_name": "pWS484", "sequence-type": "addgene-full", "addgene_id": "123032", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123032.addgene-full.gb" }, @@ -81076,7 +102194,10 @@ "plasmid_name": "pYPQ141D", "sequence-type": "depositor-full", "addgene_id": "69293", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69293.depositor-full.gb" }, @@ -81085,7 +102206,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(TM-KTM)-IRES-neo", "sequence-type": "addgene-full", "addgene_id": "128675", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128675.addgene-full.gb" }, @@ -81094,7 +102218,6 @@ "plasmid_name": "DDX3X - A393T in pENTR", "sequence-type": "addgene-full", "addgene_id": "216581", - "references": [], "kit": null, "file": "data/addgene_plasmids/216581.addgene-full.gb" }, @@ -81103,7 +102226,10 @@ "plasmid_name": "pcDNA3.1 PA-mCit-BAD", "sequence-type": "addgene-full", "addgene_id": "113459", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113459.addgene-full.gb" }, @@ -81112,7 +102238,6 @@ "plasmid_name": "R777-E061 Hs.ERBB2", "sequence-type": "depositor-full", "addgene_id": "70345", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -81124,7 +102249,10 @@ "plasmid_name": "pLenti-PGK-RAP1A-WT-neo", "sequence-type": "addgene-full", "addgene_id": "156173", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156173.addgene-full.gb" }, @@ -81133,7 +102261,10 @@ "plasmid_name": "pDONR223_PRKCB_WT", "sequence-type": "addgene-full", "addgene_id": "82226", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82226.addgene-full.gb" }, @@ -81142,7 +102273,10 @@ "plasmid_name": "pGL4_EGR1p-BC1487-luc2", "sequence-type": "addgene-full", "addgene_id": "214651", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214651.addgene-full.gb" }, @@ -81151,7 +102285,10 @@ "plasmid_name": "pENTR223-BLLF2", "sequence-type": "addgene-full", "addgene_id": "195774", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195774.addgene-full.gb" }, @@ -81160,7 +102297,10 @@ "plasmid_name": "Flag-HA-OTUD1", "sequence-type": "addgene-full", "addgene_id": "22553", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22553.addgene-full.gb" }, @@ -81169,7 +102309,10 @@ "plasmid_name": "pDestTol2CG2-mnx1:mCherry-PA-Rac1", "sequence-type": "addgene-full", "addgene_id": "169044", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2020.05.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32516597" + ], "kit": null, "file": "data/addgene_plasmids/169044.addgene-full.gb" }, @@ -81178,7 +102321,10 @@ "plasmid_name": "pGC93", "sequence-type": "depositor-full", "addgene_id": "19628", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19628.depositor-full.gb" }, @@ -81187,7 +102333,10 @@ "plasmid_name": "pGWB540", "sequence-type": "depositor-full", "addgene_id": "74874", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74874.depositor-full.gb" }, @@ -81196,7 +102345,10 @@ "plasmid_name": "pWZL Neo Myr Flag STK4", "sequence-type": "addgene-full", "addgene_id": "20563", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20563.addgene-full.gb" }, @@ -81205,7 +102357,10 @@ "plasmid_name": "MAC_C_AKIP", "sequence-type": "addgene-full", "addgene_id": "111660", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111660.addgene-full.gb" }, @@ -81214,7 +102369,6 @@ "plasmid_name": "p667-UBC-ULK4-V5-miniTurbo-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198011", - "references": [], "kit": null, "file": "data/addgene_plasmids/198011.addgene-full.gb" }, @@ -81223,7 +102377,10 @@ "plasmid_name": "pYPQ269E2", "sequence-type": "addgene-full", "addgene_id": "164721", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164721.addgene-full.gb" }, @@ -81232,7 +102389,10 @@ "plasmid_name": "pHAGE-EPHA2", "sequence-type": "addgene-full", "addgene_id": "116732", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116732.addgene-full.gb" }, @@ -81241,7 +102401,6 @@ "plasmid_name": "pEN_TT CVB3 A67G", "sequence-type": "addgene-full", "addgene_id": "216788", - "references": [], "kit": null, "file": "data/addgene_plasmids/216788.addgene-full.gb" }, @@ -81250,7 +102409,10 @@ "plasmid_name": "pLX313-Firefly luciferase", "sequence-type": "addgene-full", "addgene_id": "118017", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-018-0204-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30224644" + ], "kit": null, "file": "data/addgene_plasmids/118017.addgene-full.gb" }, @@ -81259,7 +102421,10 @@ "plasmid_name": "pLX302 PCSK5 (T288P)-V5 puro", "sequence-type": "addgene-full", "addgene_id": "98709", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98709.addgene-full.gb" }, @@ -81268,7 +102433,10 @@ "plasmid_name": "pDONR223_HRAS_p.G12C", "sequence-type": "addgene-full", "addgene_id": "81266", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -81280,7 +102448,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CSNK1G1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214458", - "references": [], "kit": null, "file": "data/addgene_plasmids/214458.addgene-full.gb" }, @@ -81289,7 +102456,10 @@ "plasmid_name": "pRU293", "sequence-type": "addgene-full", "addgene_id": "167688", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167688.addgene-full.gb" }, @@ -81298,7 +102468,6 @@ "plasmid_name": "IDG_KCNA6_OE_1", "sequence-type": "addgene-full", "addgene_id": "161643", - "references": [], "kit": null, "file": "data/addgene_plasmids/161643.addgene-full.gb" }, @@ -81307,7 +102476,10 @@ "plasmid_name": "pLG231", "sequence-type": "addgene-full", "addgene_id": "124369", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-019-0412-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31792444" + ], "kit": null, "file": "data/addgene_plasmids/124369.addgene-full.gb" }, @@ -81316,7 +102488,10 @@ "plasmid_name": "pDONR207-MUM2sp-PelA", "sequence-type": "addgene-full", "addgene_id": "170722", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcab077", + "https://www.ncbi.nlm.nih.gov/pubmed/34059917" + ], "kit": null, "file": "data/addgene_plasmids/170722.addgene-full.gb" }, @@ -81325,7 +102500,6 @@ "plasmid_name": "pPtPBR11_fcpShble_GWB", "sequence-type": "addgene-full", "addgene_id": "154031", - "references": [], "kit": null, "file": "data/addgene_plasmids/154031.addgene-full.gb" }, @@ -81334,7 +102508,10 @@ "plasmid_name": "pEN_TmiRc3_shURB5", "sequence-type": "depositor-full", "addgene_id": "81066", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "file": "data/addgene_plasmids/81066.depositor-full.gb" }, @@ -81343,7 +102520,6 @@ "plasmid_name": "pCDNA3-hTLR3-VenusFlag", "sequence-type": "addgene-full", "addgene_id": "197636", - "references": [], "kit": null, "file": "data/addgene_plasmids/197636.addgene-full.gb" }, @@ -81352,7 +102528,10 @@ "plasmid_name": "pHAGE-PDGFRA-P345S", "sequence-type": "addgene-full", "addgene_id": "116449", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116449.addgene-full.gb" }, @@ -81361,7 +102540,10 @@ "plasmid_name": "SF3A2", "sequence-type": "addgene-full", "addgene_id": "156001", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156001.addgene-full.gb" }, @@ -81370,7 +102552,10 @@ "plasmid_name": "pCPP5053", "sequence-type": "addgene-full", "addgene_id": "128707", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128707.addgene-full.gb" }, @@ -81379,7 +102564,10 @@ "plasmid_name": "pDONR221_SLC18B1", "sequence-type": "addgene-full", "addgene_id": "132021", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132021.addgene-full.gb" }, @@ -81388,7 +102576,6 @@ "plasmid_name": "R777-E291 Hs.RPS6KA2", "sequence-type": "depositor-full", "addgene_id": "70575", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -81400,7 +102587,10 @@ "plasmid_name": "pDONR221_SLC46A3", "sequence-type": "addgene-full", "addgene_id": "132215", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132215.addgene-full.gb" }, @@ -81409,7 +102599,10 @@ "plasmid_name": "p667-UBC-NRF2-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207812", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207812.addgene-full.gb" }, @@ -81418,7 +102611,10 @@ "plasmid_name": "pCAB1-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209363", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209363.addgene-full.gb" }, @@ -81427,7 +102623,10 @@ "plasmid_name": "pDONR223_OR2T33_p.P285L", "sequence-type": "addgene-full", "addgene_id": "81329", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -81439,7 +102638,10 @@ "plasmid_name": "pDONR223_RELA_WT", "sequence-type": "addgene-full", "addgene_id": "82160", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82160.addgene-full.gb" }, @@ -81448,7 +102650,10 @@ "plasmid_name": "pmCell-Free_KA2_ZIKV NS2B", "sequence-type": "addgene-full", "addgene_id": "145364", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145364.addgene-full.gb" }, @@ -81457,7 +102662,10 @@ "plasmid_name": "pAG426GAL-ccdB", "sequence-type": "addgene-full", "addgene_id": "14155", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -81469,7 +102677,10 @@ "plasmid_name": "C234-E07: attB2r-HA-attB3", "sequence-type": "addgene-full", "addgene_id": "162911", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -81481,7 +102692,10 @@ "plasmid_name": "pDONR223_TGFB1_WT", "sequence-type": "addgene-full", "addgene_id": "82280", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82280.addgene-full.gb" }, @@ -81490,7 +102704,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3B G120", "sequence-type": "addgene-full", "addgene_id": "123094", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123094.addgene-full.gb" }, @@ -81499,7 +102716,10 @@ "plasmid_name": "pShuttle-PRL.Cre", "sequence-type": "addgene-full", "addgene_id": "192934", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "file": "data/addgene_plasmids/192934.addgene-full.gb" }, @@ -81508,7 +102728,10 @@ "plasmid_name": "pENTR4 CDS A. thaliana IMPORTIN ALPHA 3 / MOS6", "sequence-type": "addgene-full", "addgene_id": "175820", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.15082", + "https://www.ncbi.nlm.nih.gov/pubmed/33210758" + ], "kit": null, "file": "data/addgene_plasmids/175820.addgene-full.gb" }, @@ -81517,7 +102740,10 @@ "plasmid_name": "pDONR221-SFXN1_STOP", "sequence-type": "addgene-full", "addgene_id": "161477", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161477.addgene-full.gb" }, @@ -81526,7 +102752,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj13-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164941", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164941.addgene-full.gb" }, @@ -81535,7 +102764,10 @@ "plasmid_name": "pMEyrkP1gfp", "sequence-type": "addgene-full", "addgene_id": "90133", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90133.addgene-full.gb" }, @@ -81544,7 +102776,10 @@ "plasmid_name": "MAC_C_MUSK", "sequence-type": "addgene-full", "addgene_id": "187781", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187781.addgene-full.gb" }, @@ -81553,7 +102788,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_E", "sequence-type": "addgene-full", "addgene_id": "169399", - "references": [], "kit": null, "file": "data/addgene_plasmids/169399.addgene-full.gb" }, @@ -81562,7 +102796,10 @@ "plasmid_name": "TRAPPC10_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176989", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176989.addgene-full.gb" }, @@ -81571,7 +102808,10 @@ "plasmid_name": "pCFJ1985 - [1-2] ENTR - Fluor - TagBFP2(PATC, NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159846", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159846.addgene-full.gb" }, @@ -81580,7 +102820,10 @@ "plasmid_name": "pHAGE-PIK3CA-K111E", "sequence-type": "addgene-full", "addgene_id": "116506", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116506.addgene-full.gb" }, @@ -81589,7 +102832,10 @@ "plasmid_name": "pAG414GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14288", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -81601,7 +102847,10 @@ "plasmid_name": "pDONR221_SLC16A8", "sequence-type": "addgene-full", "addgene_id": "131959", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131959.addgene-full.gb" }, @@ -81610,7 +102859,10 @@ "plasmid_name": "p3E-rab30", "sequence-type": "addgene-full", "addgene_id": "109688", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109688.addgene-full.gb" }, @@ -81619,7 +102871,6 @@ "plasmid_name": "pLenti6.3/NS4A-2K", "sequence-type": "addgene-full", "addgene_id": "120838", - "references": [], "kit": null, "file": "data/addgene_plasmids/120838.addgene-full.gb" }, @@ -81628,7 +102879,10 @@ "plasmid_name": "TFORF3342", "sequence-type": "addgene-full", "addgene_id": "144818", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144818.addgene-full.gb" }, @@ -81637,7 +102891,10 @@ "plasmid_name": "pDONR223_MAPK7_p.L806R", "sequence-type": "addgene-full", "addgene_id": "82865", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82865.addgene-full.gb" }, @@ -81646,7 +102903,10 @@ "plasmid_name": "pME-Cavin4b_PRDmt", "sequence-type": "addgene-full", "addgene_id": "176017", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201905065", + "https://www.ncbi.nlm.nih.gov/pubmed/34633413" + ], "kit": null, "file": "data/addgene_plasmids/176017.addgene-full.gb" }, @@ -81655,7 +102915,10 @@ "plasmid_name": "pDONR223_STAG2_p.P572S", "sequence-type": "addgene-full", "addgene_id": "81598", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -81667,7 +102930,10 @@ "plasmid_name": "pDONR223_MTM1_p.P226S", "sequence-type": "addgene-full", "addgene_id": "81678", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -81679,7 +102945,6 @@ "plasmid_name": "Hs.KRAS4a G12D", "sequence-type": "depositor-full", "addgene_id": "83168", - "references": [], "kit": null, "file": "data/addgene_plasmids/83168.depositor-full.gb" }, @@ -81688,7 +102953,10 @@ "plasmid_name": "pCM3.08", "sequence-type": "depositor-full", "addgene_id": "19405", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19405.depositor-full.gb" }, @@ -81697,7 +102965,10 @@ "plasmid_name": "p3E-EHD2a", "sequence-type": "addgene-full", "addgene_id": "109568", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109568.addgene-full.gb" }, @@ -81706,7 +102977,10 @@ "plasmid_name": "pDONR223-ZNF79", "sequence-type": "addgene-full", "addgene_id": "88374", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88374.addgene-full.gb" }, @@ -81715,7 +102989,6 @@ "plasmid_name": "R777-E111 Hs.IRS2", "sequence-type": "depositor-full", "addgene_id": "70395", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -81727,7 +103000,10 @@ "plasmid_name": "pLenti.PGK.blast-Renilla_Luciferase", "sequence-type": "addgene-full", "addgene_id": "74444", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aab4138", + "https://www.ncbi.nlm.nih.gov/pubmed/26816379" + ], "kit": null, "file": "data/addgene_plasmids/74444.addgene-full.gb" }, @@ -81736,7 +103012,10 @@ "plasmid_name": "W118-1_hZBTB7B_R49H", "sequence-type": "addgene-full", "addgene_id": "180382", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "file": "data/addgene_plasmids/180382.addgene-full.gb" }, @@ -81745,7 +103024,10 @@ "plasmid_name": "pPN10-gDM1d", "sequence-type": "addgene-full", "addgene_id": "114387", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms13272", + "https://www.ncbi.nlm.nih.gov/pubmed/27827362" + ], "kit": null, "file": "data/addgene_plasmids/114387.addgene-full.gb" }, @@ -81754,7 +103036,10 @@ "plasmid_name": "251 pTol2Dest", "sequence-type": "depositor-full", "addgene_id": "73484", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/73484.depositor-full.gb" }, @@ -81763,7 +103048,9 @@ "plasmid_name": "pFLIP37", "sequence-type": "depositor-full", "addgene_id": "65505", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65505.depositor-full.gb" }, @@ -81772,7 +103059,10 @@ "plasmid_name": "pDONR223_CXCR4_WT", "sequence-type": "addgene-full", "addgene_id": "81957", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -81784,7 +103074,10 @@ "plasmid_name": "pT3TS-Dest_R1-R3", "sequence-type": "addgene-full", "addgene_id": "140878", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/140878.addgene-full.gb" }, @@ -81793,7 +103086,10 @@ "plasmid_name": "pDONR221-SLC17A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161126", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161126.addgene-full.gb" }, @@ -81802,7 +103098,10 @@ "plasmid_name": "pinducer 20 DN-KASH\u0394PPPL", "sequence-type": "addgene-full", "addgene_id": "129280", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2019.07.021", + "https://www.ncbi.nlm.nih.gov/pubmed/31402305" + ], "kit": null, "file": "data/addgene_plasmids/129280.addgene-full.gb" }, @@ -81811,7 +103110,10 @@ "plasmid_name": "pDONR223_SMAD4_p.E134K", "sequence-type": "addgene-full", "addgene_id": "81503", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -81823,7 +103125,10 @@ "plasmid_name": "pMuLE ENTR CMV iRFP R4-R3", "sequence-type": "depositor-full", "addgene_id": "62158", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62158.depositor-full.gb" }, @@ -81832,7 +103137,10 @@ "plasmid_name": "actc1b-mKate2-rab24", "sequence-type": "addgene-full", "addgene_id": "109613", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109613.addgene-full.gb" }, @@ -81841,7 +103149,10 @@ "plasmid_name": "pDON223 Spike A701V", "sequence-type": "addgene-full", "addgene_id": "180062", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180062.addgene-full.gb" }, @@ -81850,7 +103161,10 @@ "plasmid_name": "TFORF3261", "sequence-type": "addgene-full", "addgene_id": "144737", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144737.addgene-full.gb" }, @@ -81859,7 +103173,10 @@ "plasmid_name": "HA-CYLD-WT", "sequence-type": "addgene-full", "addgene_id": "15506", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0703268104", + "https://www.ncbi.nlm.nih.gov/pubmed/17495026" + ], "kit": null, "file": "data/addgene_plasmids/15506.addgene-full.gb" }, @@ -81868,7 +103185,6 @@ "plasmid_name": "pDONR223 CASP1[CARD]-mSG2 (inflammasome reporter)", "sequence-type": "addgene-full", "addgene_id": "228043", - "references": [], "kit": null, "file": "data/addgene_plasmids/228043.addgene-full.gb" }, @@ -81877,7 +103193,10 @@ "plasmid_name": "pcDNA3_SP-GLP1R-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194381", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194381.addgene-full.gb" }, @@ -81886,7 +103205,10 @@ "plasmid_name": "PB-TAC-MKOS", "sequence-type": "depositor-full", "addgene_id": "80484", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "file": "data/addgene_plasmids/80484.depositor-full.gb" }, @@ -81895,7 +103217,10 @@ "plasmid_name": "TFORF3407", "sequence-type": "addgene-full", "addgene_id": "144883", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144883.addgene-full.gb" }, @@ -81904,7 +103229,10 @@ "plasmid_name": "pNJB99", "sequence-type": "depositor-full", "addgene_id": "51521", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51521.depositor-full.gb" }, @@ -81913,7 +103241,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189875", - "references": [], "kit": null, "file": "data/addgene_plasmids/189875.addgene-full.gb" }, @@ -81922,7 +103249,10 @@ "plasmid_name": "pDONR223_PTEN_WT", "sequence-type": "addgene-full", "addgene_id": "81737", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -81934,7 +103264,10 @@ "plasmid_name": "p{Mhc-F4-678-DsRed::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182186", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182186.addgene-full.gb" }, @@ -81943,7 +103276,10 @@ "plasmid_name": "pDONR223_ELF1_WT", "sequence-type": "addgene-full", "addgene_id": "81883", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -81955,7 +103291,10 @@ "plasmid_name": "pDONR221-SLC35C2_STOP", "sequence-type": "addgene-full", "addgene_id": "161312", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161312.addgene-full.gb" }, @@ -81964,7 +103303,10 @@ "plasmid_name": "LZRS-HOTAIR", "sequence-type": "addgene-full", "addgene_id": "26110", - "references": [], + "references": [ + "https://doi.org/10.1038/nature08975", + "https://www.ncbi.nlm.nih.gov/pubmed/20393566" + ], "kit": null, "file": "data/addgene_plasmids/26110.addgene-full.gb" }, @@ -81973,7 +103315,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp1", "sequence-type": "addgene-full", "addgene_id": "168931", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168931.addgene-full.gb" }, @@ -81982,7 +103327,10 @@ "plasmid_name": "pHAGE-BRAF-L678I", "sequence-type": "addgene-full", "addgene_id": "116183", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116183.addgene-full.gb" }, @@ -81991,7 +103339,10 @@ "plasmid_name": "pDEST-ORF-V1", "sequence-type": "depositor-full", "addgene_id": "73637", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaf0793", + "https://www.ncbi.nlm.nih.gov/pubmed/27405979" + ], "kit": null, "file": "data/addgene_plasmids/73637.depositor-full.gb" }, @@ -82000,7 +103351,10 @@ "plasmid_name": "CLP1", "sequence-type": "addgene-full", "addgene_id": "155462", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155462.addgene-full.gb" }, @@ -82009,7 +103363,10 @@ "plasmid_name": "TFORF3027", "sequence-type": "addgene-full", "addgene_id": "144503", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144503.addgene-full.gb" }, @@ -82018,7 +103375,10 @@ "plasmid_name": "pHAGE-EGFR-H835L", "sequence-type": "addgene-full", "addgene_id": "116263", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116263.addgene-full.gb" }, @@ -82027,7 +103387,10 @@ "plasmid_name": "PPAPDC2", "sequence-type": "addgene-full", "addgene_id": "155836", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155836.addgene-full.gb" }, @@ -82036,7 +103399,10 @@ "plasmid_name": "TFORF3481", "sequence-type": "addgene-full", "addgene_id": "144957", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144957.addgene-full.gb" }, @@ -82045,7 +103411,10 @@ "plasmid_name": "pBi2FC-N-MPK12-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216139", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216139.addgene-full.gb" }, @@ -82054,7 +103423,10 @@ "plasmid_name": "R620-M07-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-541)-His6 E484K", "sequence-type": "addgene-full", "addgene_id": "170193", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/170193.addgene-full.gb" }, @@ -82063,7 +103435,9 @@ "plasmid_name": "pMpGWB114", "sequence-type": "depositor-full", "addgene_id": "68568", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68568.depositor-full.gb" }, @@ -82072,7 +103446,10 @@ "plasmid_name": "p35S::SP-mCherry-GFP-HDEL", "sequence-type": "addgene-full", "addgene_id": "159097", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "file": "data/addgene_plasmids/159097.addgene-full.gb" }, @@ -82081,7 +103458,10 @@ "plasmid_name": "pDONR221-SLC22A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161069", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161069.addgene-full.gb" }, @@ -82090,7 +103470,10 @@ "plasmid_name": "beta-catenin (S33A, S37A, T41A, S45A)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64613", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/64613.addgene-full.gb" }, @@ -82099,7 +103482,10 @@ "plasmid_name": "LC101: pMVP/PB/Neo-DEST", "sequence-type": "addgene-full", "addgene_id": "121875", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121875.addgene-full.gb" }, @@ -82108,7 +103494,10 @@ "plasmid_name": "pDEST-FRT/TO-eGFP-REV7", "sequence-type": "addgene-full", "addgene_id": "114128", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "file": "data/addgene_plasmids/114128.addgene-full.gb" }, @@ -82117,7 +103506,10 @@ "plasmid_name": "TFORF3202", "sequence-type": "addgene-full", "addgene_id": "144678", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144678.addgene-full.gb" }, @@ -82126,7 +103518,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-ADCK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158195", - "references": [], "kit": null, "file": "data/addgene_plasmids/158195.addgene-full.gb" }, @@ -82135,7 +103526,10 @@ "plasmid_name": "pHAGE-AXL-G736W", "sequence-type": "addgene-full", "addgene_id": "116118", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116118.addgene-full.gb" }, @@ -82144,7 +103538,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP12_nostop", "sequence-type": "addgene-full", "addgene_id": "149314", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149314.addgene-full.gb" }, @@ -82153,7 +103550,10 @@ "plasmid_name": "pcDNA3.1/nV5-DEST-beta catenin", "sequence-type": "addgene-full", "addgene_id": "20140", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.200805041", + "https://www.ncbi.nlm.nih.gov/pubmed/19075109" + ], "kit": null, "file": "data/addgene_plasmids/20140.addgene-full.gb" }, @@ -82162,7 +103562,6 @@ "plasmid_name": "R777-E157 Hs.PDGFRB", "sequence-type": "depositor-full", "addgene_id": "70441", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -82174,7 +103573,10 @@ "plasmid_name": "TFORF3122", "sequence-type": "addgene-full", "addgene_id": "144598", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144598.addgene-full.gb" }, @@ -82183,7 +103585,10 @@ "plasmid_name": "pMOS015: mito-roGFP2-Orp1 H2O2 oxidation sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163059", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163059.addgene-full.gb" }, @@ -82192,7 +103597,10 @@ "plasmid_name": "pDONR223_TMPO_WT", "sequence-type": "addgene-full", "addgene_id": "81818", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -82204,7 +103612,10 @@ "plasmid_name": "pDONR221-SLC9B1_STOP", "sequence-type": "addgene-full", "addgene_id": "161389", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161389.addgene-full.gb" }, @@ -82213,7 +103624,10 @@ "plasmid_name": "TFORF3349", "sequence-type": "addgene-full", "addgene_id": "144825", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144825.addgene-full.gb" }, @@ -82222,7 +103636,10 @@ "plasmid_name": "pHAGE-EGFR-T854A", "sequence-type": "addgene-full", "addgene_id": "116311", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116311.addgene-full.gb" }, @@ -82231,7 +103648,10 @@ "plasmid_name": "pQLinkHD_LSSmOrange", "sequence-type": "addgene-full", "addgene_id": "118860", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "file": "data/addgene_plasmids/118860.addgene-full.gb" }, @@ -82240,7 +103660,10 @@ "plasmid_name": "pDONR221_SLC22A2", "sequence-type": "addgene-full", "addgene_id": "131964", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms23031203", + "https://www.ncbi.nlm.nih.gov/pubmed/35163125" + ], "kit": null, "file": "data/addgene_plasmids/131964.addgene-full.gb" }, @@ -82249,7 +103672,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-5", "sequence-type": "depositor-full", "addgene_id": "46708", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46708.depositor-full.gb" }, @@ -82258,7 +103684,10 @@ "plasmid_name": "pWS-TK3", "sequence-type": "addgene-full", "addgene_id": "20349", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "file": "data/addgene_plasmids/20349.addgene-full.gb" }, @@ -82267,7 +103696,10 @@ "plasmid_name": "TFORF3315", "sequence-type": "addgene-full", "addgene_id": "144791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144791.addgene-full.gb" }, @@ -82276,7 +103708,10 @@ "plasmid_name": "pEBTetDBl-CLIP-POC5", "sequence-type": "addgene-full", "addgene_id": "136836", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136836.addgene-full.gb" }, @@ -82285,7 +103720,10 @@ "plasmid_name": "pLIB-TetR-KRAB-IRES-BLAS", "sequence-type": "depositor-full", "addgene_id": "55820", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "file": "data/addgene_plasmids/55820.depositor-full.gb" }, @@ -82294,7 +103732,6 @@ "plasmid_name": "pDEST27-GST-hADAM10", "sequence-type": "addgene-full", "addgene_id": "189553", - "references": [], "kit": null, "file": "data/addgene_plasmids/189553.addgene-full.gb" }, @@ -82303,7 +103740,10 @@ "plasmid_name": "pDONR221-SLC25A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161180", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161180.addgene-full.gb" }, @@ -82312,7 +103752,10 @@ "plasmid_name": "pDONR221-kcnj19a", "sequence-type": "addgene-full", "addgene_id": "173148", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173148.addgene-full.gb" }, @@ -82321,7 +103764,10 @@ "plasmid_name": "pDONR221-SLC38A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161260", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161260.addgene-full.gb" }, @@ -82330,7 +103776,10 @@ "plasmid_name": "pDONR223_SPOP_p.E47A", "sequence-type": "addgene-full", "addgene_id": "81645", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -82342,7 +103791,10 @@ "plasmid_name": "pYPQ144", "sequence-type": "addgene-full", "addgene_id": "69296", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69296.addgene-full.gb" }, @@ -82351,7 +103803,6 @@ "plasmid_name": "p667-UBC-CDC42BPA-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189907", - "references": [], "kit": null, "file": "data/addgene_plasmids/189907.addgene-full.gb" }, @@ -82360,7 +103811,6 @@ "plasmid_name": "pCWX-R4DESTR2-PGK-Tk:Sh", "sequence-type": "addgene-full", "addgene_id": "114321", - "references": [], "kit": null, "file": "data/addgene_plasmids/114321.addgene-full.gb" }, @@ -82369,7 +103819,10 @@ "plasmid_name": "TFORF2995", "sequence-type": "addgene-full", "addgene_id": "144471", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144471.addgene-full.gb" }, @@ -82378,7 +103831,10 @@ "plasmid_name": "p3E-FAPP1", "sequence-type": "addgene-full", "addgene_id": "109555", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109555.addgene-full.gb" }, @@ -82387,7 +103843,10 @@ "plasmid_name": "DDX21", "sequence-type": "addgene-full", "addgene_id": "155510", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155510.addgene-full.gb" }, @@ -82396,7 +103855,10 @@ "plasmid_name": "Ad-shMKP-3", "sequence-type": "addgene-full", "addgene_id": "131530", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "file": "data/addgene_plasmids/131530.addgene-full.gb" }, @@ -82405,7 +103867,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp14", "sequence-type": "addgene-full", "addgene_id": "168843", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168843.addgene-full.gb" }, @@ -82414,7 +103879,10 @@ "plasmid_name": "MAC3_C_CCDC22(T17A)", "sequence-type": "addgene-full", "addgene_id": "209694", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209694.addgene-full.gb" }, @@ -82423,7 +103891,6 @@ "plasmid_name": "pDONR221-WT-long-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "192097", - "references": [], "kit": null, "file": "data/addgene_plasmids/192097.addgene-full.gb" }, @@ -82432,7 +103899,10 @@ "plasmid_name": "pLenti CMV Puro DHFR.dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134729", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "file": "data/addgene_plasmids/134729.addgene-full.gb" }, @@ -82441,7 +103911,6 @@ "plasmid_name": "pAM-35s-Lyk5-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102389", - "references": [], "kit": null, "file": "data/addgene_plasmids/102389.addgene-full.gb" }, @@ -82450,7 +103919,10 @@ "plasmid_name": "pDEST-Spe3-RfA-HA", "sequence-type": "addgene-full", "addgene_id": "186374", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186374.addgene-full.gb" }, @@ -82459,7 +103931,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP14", "sequence-type": "addgene-full", "addgene_id": "154412", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154412.addgene-full.gb" }, @@ -82468,7 +103943,10 @@ "plasmid_name": "pDONR223_PIK3R3_p.R245C", "sequence-type": "addgene-full", "addgene_id": "82777", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82777.addgene-full.gb" }, @@ -82477,7 +103955,10 @@ "plasmid_name": "Bact2-APEX2-GBP in pDEST-Tol2-pA2-acrys-cherry", "sequence-type": "depositor-full", "addgene_id": "67668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67668.depositor-full.gb" }, @@ -82486,7 +103967,10 @@ "plasmid_name": "pAG305GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14258", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -82498,7 +103982,10 @@ "plasmid_name": "Munc18cF119E-pDEST27", "sequence-type": "addgene-full", "addgene_id": "85625", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1600-0854.2006.00474.x", + "https://www.ncbi.nlm.nih.gov/pubmed/16899085" + ], "kit": null, "file": "data/addgene_plasmids/85625.addgene-full.gb" }, @@ -82507,7 +103994,10 @@ "plasmid_name": "SPOP-V5 (BTB)", "sequence-type": "addgene-full", "addgene_id": "169721", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169721.addgene-full.gb" }, @@ -82516,7 +104006,9 @@ "plasmid_name": "pDest-pol2-Smarcd1-Myc", "sequence-type": "addgene-full", "addgene_id": "227716", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.01.24.577061" + ], "kit": null, "file": "data/addgene_plasmids/227716.addgene-full.gb" }, @@ -82525,7 +104017,10 @@ "plasmid_name": "pLenti-FRA1", "sequence-type": "addgene-full", "addgene_id": "188665", - "references": [], + "references": [ + "https://doi.org/10.1007/s00018-022-04638-y", + "https://www.ncbi.nlm.nih.gov/pubmed/36534167" + ], "kit": null, "file": "data/addgene_plasmids/188665.addgene-full.gb" }, @@ -82534,7 +104029,6 @@ "plasmid_name": "p42Nat 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58557", - "references": [], "kit": null, "file": "data/addgene_plasmids/58557.depositor-full.gb" }, @@ -82543,7 +104037,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 S_stop", "sequence-type": "addgene-full", "addgene_id": "168558", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168558.addgene-full.gb" }, @@ -82552,7 +104049,10 @@ "plasmid_name": "pAFMW-Nbr-CM", "sequence-type": "addgene-full", "addgene_id": "188585", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188585.addgene-full.gb" }, @@ -82561,7 +104061,10 @@ "plasmid_name": "LC701: pMVP (L3-L2) eCFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121767", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121767.addgene-full.gb" }, @@ -82570,7 +104073,10 @@ "plasmid_name": "pDONR223_EGFR_p.ELREA746del_T790M", "sequence-type": "addgene-full", "addgene_id": "82917", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82917.addgene-full.gb" }, @@ -82579,7 +104085,10 @@ "plasmid_name": "pMuLE (L1-L4) 4X PRE", "sequence-type": "addgene-full", "addgene_id": "206167", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "file": "data/addgene_plasmids/206167.addgene-full.gb" }, @@ -82588,7 +104097,10 @@ "plasmid_name": "pDONR223_CDK17_p.M85I", "sequence-type": "addgene-full", "addgene_id": "81471", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -82600,7 +104112,10 @@ "plasmid_name": "IZ501: pMVP/Lenti-DEST", "sequence-type": "addgene-full", "addgene_id": "121848", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121848.addgene-full.gb" }, @@ -82609,7 +104124,6 @@ "plasmid_name": "HCP4", "sequence-type": "addgene-full", "addgene_id": "166106", - "references": [], "kit": null, "file": "data/addgene_plasmids/166106.addgene-full.gb" }, @@ -82618,7 +104132,10 @@ "plasmid_name": "pEV1.05", "sequence-type": "depositor-full", "addgene_id": "37498", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.047654", + "https://www.ncbi.nlm.nih.gov/pubmed/20335358" + ], "kit": null, "file": "data/addgene_plasmids/37498.depositor-full.gb" }, @@ -82627,7 +104144,10 @@ "plasmid_name": "TFORF3169", "sequence-type": "addgene-full", "addgene_id": "144645", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144645.addgene-full.gb" }, @@ -82636,7 +104156,10 @@ "plasmid_name": "actc1b-mKate2-Rab19", "sequence-type": "addgene-full", "addgene_id": "109761", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109761.addgene-full.gb" }, @@ -82645,7 +104168,10 @@ "plasmid_name": "pMOS008E: Entry vector for: GCaMP6F calcium sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163064", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163064.addgene-full.gb" }, @@ -82654,7 +104180,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 S", "sequence-type": "addgene-full", "addgene_id": "149329", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149329.addgene-full.gb" }, @@ -82663,7 +104192,9 @@ "plasmid_name": "pMpGWB406", "sequence-type": "depositor-full", "addgene_id": "68671", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68671.depositor-full.gb" }, @@ -82672,7 +104203,10 @@ "plasmid_name": "pDONR223_FGF1_WT", "sequence-type": "addgene-full", "addgene_id": "81825", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -82684,7 +104218,10 @@ "plasmid_name": "pDONR223_SMARCB1_WT", "sequence-type": "addgene-full", "addgene_id": "81791", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81791.addgene-full.gb" }, @@ -82693,7 +104230,10 @@ "plasmid_name": "pAG414GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14216", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -82717,7 +104257,10 @@ "plasmid_name": "MSCV-FOXP3-IRES-Thy1.1", "sequence-type": "addgene-full", "addgene_id": "17443", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.05.042", + "https://www.ncbi.nlm.nih.gov/pubmed/16873067" + ], "kit": null, "file": "data/addgene_plasmids/17443.addgene-full.gb" }, @@ -82726,7 +104269,10 @@ "plasmid_name": "pCAG-eGFP-pA", "sequence-type": "depositor-full", "addgene_id": "107281", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03044-y", + "https://www.ncbi.nlm.nih.gov/pubmed/29507284" + ], "kit": null, "file": "data/addgene_plasmids/107281.depositor-full.gb" }, @@ -82735,7 +104281,10 @@ "plasmid_name": "pDONR223_GPR156_WT", "sequence-type": "addgene-full", "addgene_id": "81822", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -82747,7 +104296,10 @@ "plasmid_name": "pDONR223_RAB42_WT", "sequence-type": "addgene-full", "addgene_id": "81796", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -82771,7 +104323,10 @@ "plasmid_name": "MultiMate-Cell-cycle", "sequence-type": "addgene-full", "addgene_id": "206280", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206280.addgene-full.gb" }, @@ -82780,7 +104335,10 @@ "plasmid_name": "pMOS010E: Entry vector for: CheRiff-eGFP channelrhodopsin (plasma membrane)", "sequence-type": "addgene-full", "addgene_id": "163063", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163063.addgene-full.gb" }, @@ -82789,7 +104347,10 @@ "plasmid_name": "pEn-Chimera", "sequence-type": "depositor-full", "addgene_id": "61432", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12554", + "https://www.ncbi.nlm.nih.gov/pubmed/24836556" + ], "kit": null, "file": "data/addgene_plasmids/61432.depositor-full.gb" }, @@ -82798,7 +104359,10 @@ "plasmid_name": "actc1b-mKate2-Rab38c", "sequence-type": "addgene-full", "addgene_id": "109766", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109766.addgene-full.gb" }, @@ -82807,7 +104371,10 @@ "plasmid_name": "TFORF3166", "sequence-type": "addgene-full", "addgene_id": "144642", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144642.addgene-full.gb" }, @@ -82816,7 +104383,10 @@ "plasmid_name": "pDONR223_ACVR2A_p.A381V", "sequence-type": "addgene-full", "addgene_id": "81476", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -82828,7 +104398,10 @@ "plasmid_name": "pDONR221-SLC16A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161053", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161053.addgene-full.gb" }, @@ -82837,7 +104410,10 @@ "plasmid_name": "IZ702: pMVP (L3-L2) myc epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121760", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121760.addgene-full.gb" }, @@ -82846,7 +104422,10 @@ "plasmid_name": "pCW-GFP-CtIP-T847E", "sequence-type": "depositor-full", "addgene_id": "71111", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71111.depositor-full.gb" }, @@ -82855,7 +104434,10 @@ "plasmid_name": "pHAGE-EGFR-G983R", "sequence-type": "addgene-full", "addgene_id": "116259", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116259.addgene-full.gb" }, @@ -82864,7 +104446,6 @@ "plasmid_name": "R777-E029 Hs.CNKSR2", "sequence-type": "depositor-full", "addgene_id": "70313", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -82876,7 +104457,10 @@ "plasmid_name": "CLK1", "sequence-type": "addgene-full", "addgene_id": "155458", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155458.addgene-full.gb" }, @@ -82885,7 +104469,10 @@ "plasmid_name": "TFORF3063", "sequence-type": "addgene-full", "addgene_id": "144539", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144539.addgene-full.gb" }, @@ -82894,7 +104481,10 @@ "plasmid_name": "pDONR221-ZNF879", "sequence-type": "depositor-full", "addgene_id": "101623", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101623.depositor-full.gb" }, @@ -82903,7 +104493,10 @@ "plasmid_name": "pKRG3-mU6-PUb-3xFLAG-hSpCas9", "sequence-type": "addgene-full", "addgene_id": "162161", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-80436-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33436886" + ], "kit": null, "file": "data/addgene_plasmids/162161.addgene-full.gb" }, @@ -82912,7 +104505,10 @@ "plasmid_name": "pcDNA6.2EmGFP-DAXX", "sequence-type": "addgene-full", "addgene_id": "169726", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169726.addgene-full.gb" }, @@ -82921,7 +104517,6 @@ "plasmid_name": "R777-E205 Hs.PTEN", "sequence-type": "depositor-full", "addgene_id": "70489", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -82933,7 +104528,10 @@ "plasmid_name": "pDONR221-SLC8A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161328", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161328.addgene-full.gb" }, @@ -82942,7 +104540,10 @@ "plasmid_name": "pGWB428", "sequence-type": "depositor-full", "addgene_id": "74822", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74822.depositor-full.gb" }, @@ -82951,7 +104552,10 @@ "plasmid_name": "pcDNA3.1_nV5-TAOK2", "sequence-type": "addgene-full", "addgene_id": "173000", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/173000.addgene-full.gb" }, @@ -82960,7 +104564,10 @@ "plasmid_name": "peft-3::cas-9::tbb-2 3'UTR", "sequence-type": "addgene-full", "addgene_id": "48960", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkt805", + "https://www.ncbi.nlm.nih.gov/pubmed/24013562" + ], "kit": null, "file": "data/addgene_plasmids/48960.addgene-full.gb" }, @@ -82969,7 +104576,10 @@ "plasmid_name": "actc1b-mKate2-rab36", "sequence-type": "addgene-full", "addgene_id": "109629", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109629.addgene-full.gb" }, @@ -82978,7 +104588,10 @@ "plasmid_name": "pDON223 Spike T1027I", "sequence-type": "addgene-full", "addgene_id": "180058", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180058.addgene-full.gb" }, @@ -82987,7 +104600,10 @@ "plasmid_name": "LIIc R 5-6", "sequence-type": "depositor-full", "addgene_id": "54373", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54373.depositor-full.gb" }, @@ -82996,7 +104612,10 @@ "plasmid_name": "pDONR223_ATF2_p.T339A", "sequence-type": "addgene-full", "addgene_id": "82770", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82770.addgene-full.gb" }, @@ -83005,7 +104624,10 @@ "plasmid_name": "pDONR223_PIK3R4_p.E1209K", "sequence-type": "addgene-full", "addgene_id": "81539", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -83017,7 +104639,10 @@ "plasmid_name": "MLKS2del4exp", "sequence-type": "addgene-full", "addgene_id": "130861", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "file": "data/addgene_plasmids/130861.addgene-full.gb" }, @@ -83026,7 +104651,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-S", "sequence-type": "addgene-full", "addgene_id": "154415", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154415.addgene-full.gb" }, @@ -83035,7 +104663,6 @@ "plasmid_name": "474 p5E-basprom", "sequence-type": "depositor-full", "addgene_id": "31158", - "references": [], "kit": null, "file": "data/addgene_plasmids/31158.depositor-full.gb" }, @@ -83044,7 +104671,10 @@ "plasmid_name": "MAC3_C_VPS35L(A830T)", "sequence-type": "addgene-full", "addgene_id": "209693", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209693.addgene-full.gb" }, @@ -83053,7 +104683,10 @@ "plasmid_name": "pDEST-Spe3-HA-RfA", "sequence-type": "addgene-full", "addgene_id": "186373", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186373.addgene-full.gb" }, @@ -83062,7 +104695,10 @@ "plasmid_name": "pAG413GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14189", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -83074,7 +104710,10 @@ "plasmid_name": "p3E-SERCA1", "sequence-type": "addgene-full", "addgene_id": "109552", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109552.addgene-full.gb" }, @@ -83083,7 +104722,10 @@ "plasmid_name": "TFORF3000", "sequence-type": "addgene-full", "addgene_id": "144476", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144476.addgene-full.gb" }, @@ -83092,7 +104734,10 @@ "plasmid_name": "pDEHISSIRV55", "sequence-type": "depositor-full", "addgene_id": "97055", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97055.depositor-full.gb" }, @@ -83101,7 +104746,10 @@ "plasmid_name": "pDONR221-SLC30A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161267", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161267.addgene-full.gb" }, @@ -83110,7 +104758,6 @@ "plasmid_name": "p667-UBC-SBK3-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189900", - "references": [], "kit": null, "file": "data/addgene_plasmids/189900.addgene-full.gb" }, @@ -83119,7 +104766,10 @@ "plasmid_name": "pDONR223_SPOP_p.F102C", "sequence-type": "addgene-full", "addgene_id": "81642", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -83131,7 +104781,10 @@ "plasmid_name": "pGGW_SM_BglII", "sequence-type": "depositor-full", "addgene_id": "49314", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -83143,7 +104796,10 @@ "plasmid_name": "pEBTet-\u03b2-tubulin_SNAP", "sequence-type": "addgene-full", "addgene_id": "136831", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136831.addgene-full.gb" }, @@ -83152,7 +104808,6 @@ "plasmid_name": "458 p5E-uasE1b", "sequence-type": "depositor-full", "addgene_id": "26026", - "references": [], "kit": null, "file": "data/addgene_plasmids/26026.depositor-full.gb" }, @@ -83161,7 +104816,10 @@ "plasmid_name": "pDONR223 SCAF8_isoC_CRISPR resistant", "sequence-type": "addgene-full", "addgene_id": "122466", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "file": "data/addgene_plasmids/122466.addgene-full.gb" }, @@ -83170,7 +104828,10 @@ "plasmid_name": "pDONR221-SLC18B1_STOP", "sequence-type": "addgene-full", "addgene_id": "161187", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161187.addgene-full.gb" }, @@ -83179,7 +104840,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hADAM10(aa1-213)", "sequence-type": "addgene-full", "addgene_id": "189554", - "references": [], "kit": null, "file": "data/addgene_plasmids/189554.addgene-full.gb" }, @@ -83188,7 +104848,10 @@ "plasmid_name": "pEBTetD-SNAP-Centrin2", "sequence-type": "addgene-full", "addgene_id": "136785", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136785.addgene-full.gb" }, @@ -83197,7 +104860,10 @@ "plasmid_name": "pE5c", "sequence-type": "depositor-full", "addgene_id": "17465", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17465.depositor-full.gb" }, @@ -83206,7 +104872,10 @@ "plasmid_name": "TFORF3346", "sequence-type": "addgene-full", "addgene_id": "144822", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144822.addgene-full.gb" }, @@ -83215,7 +104884,10 @@ "plasmid_name": "pGRG37", "sequence-type": "depositor-full", "addgene_id": "16667", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2180-6-39", + "https://www.ncbi.nlm.nih.gov/pubmed/16646962" + ], "kit": null, "file": "data/addgene_plasmids/16667.depositor-full.gb" }, @@ -83224,7 +104896,10 @@ "plasmid_name": "pHAGE-EGFR-V769L", "sequence-type": "addgene-full", "addgene_id": "116316", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116316.addgene-full.gb" }, @@ -83233,7 +104908,10 @@ "plasmid_name": "pGC183", "sequence-type": "depositor-full", "addgene_id": "19630", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19630.depositor-full.gb" }, @@ -83242,7 +104920,10 @@ "plasmid_name": "pAG303GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14374", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -83254,7 +104935,10 @@ "plasmid_name": "pDONR221_SLC22A11", "sequence-type": "addgene-full", "addgene_id": "131963", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131963.addgene-full.gb" }, @@ -83263,7 +104947,10 @@ "plasmid_name": "pAAV2-SynTetOff-palGFP", "sequence-type": "addgene-full", "addgene_id": "190232", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190232.addgene-full.gb" }, @@ -83272,7 +104959,10 @@ "plasmid_name": "pCZGY2844", "sequence-type": "addgene-full", "addgene_id": "87760", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/87760.addgene-full.gb" }, @@ -83281,7 +104971,9 @@ "plasmid_name": "p3E-mCherry-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82592", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82592.depositor-full.gb" }, @@ -83290,7 +104982,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP10_nostop", "sequence-type": "addgene-full", "addgene_id": "149313", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149313.addgene-full.gb" }, @@ -83299,7 +104994,10 @@ "plasmid_name": "p3E-BIN1_tv8", "sequence-type": "addgene-full", "addgene_id": "126574", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201905065", + "https://www.ncbi.nlm.nih.gov/pubmed/34633413" + ], "kit": null, "file": "data/addgene_plasmids/126574.addgene-full.gb" }, @@ -83308,7 +105006,10 @@ "plasmid_name": "pGP4G-TPLRD1-ccdB", "sequence-type": "depositor-full", "addgene_id": "83877", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1324147111", + "https://www.ncbi.nlm.nih.gov/pubmed/24979769" + ], "kit": null, "file": "data/addgene_plasmids/83877.depositor-full.gb" }, @@ -83317,7 +105018,6 @@ "plasmid_name": "p667-UBC-PHKG1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158192", - "references": [], "kit": null, "file": "data/addgene_plasmids/158192.addgene-full.gb" }, @@ -83326,7 +105026,10 @@ "plasmid_name": "LB801: pMVP/PB/eCFP-DEST", "sequence-type": "addgene-full", "addgene_id": "121872", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121872.addgene-full.gb" }, @@ -83335,7 +105038,10 @@ "plasmid_name": "R620-M08-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(318-529)-3C-His8-SBP E484K", "sequence-type": "addgene-full", "addgene_id": "170194", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/170194.addgene-full.gb" }, @@ -83344,7 +105050,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 M_stop", "sequence-type": "addgene-full", "addgene_id": "168562", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168562.addgene-full.gb" }, @@ -83353,7 +105062,10 @@ "plasmid_name": "pEN_TT 3xFLAG-NUP37", "sequence-type": "addgene-full", "addgene_id": "192299", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192299.addgene-full.gb" }, @@ -83362,7 +105074,10 @@ "plasmid_name": "pEN41A-T38S38", "sequence-type": "depositor-full", "addgene_id": "49524", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "file": "data/addgene_plasmids/49524.depositor-full.gb" }, @@ -83371,7 +105086,10 @@ "plasmid_name": "TFORF3474", "sequence-type": "addgene-full", "addgene_id": "144950", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144950.addgene-full.gb" }, @@ -83380,7 +105098,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp8", "sequence-type": "addgene-full", "addgene_id": "168936", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168936.addgene-full.gb" }, @@ -83389,7 +105110,10 @@ "plasmid_name": "pHAGE-BRAF-M517I", "sequence-type": "addgene-full", "addgene_id": "116184", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116184.addgene-full.gb" }, @@ -83398,7 +105122,10 @@ "plasmid_name": "TFORF3028", "sequence-type": "addgene-full", "addgene_id": "144504", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144504.addgene-full.gb" }, @@ -83407,7 +105134,10 @@ "plasmid_name": "pCS2-HA-Mettl3", "sequence-type": "addgene-full", "addgene_id": "196262", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2022.04.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35512709" + ], "kit": null, "file": "data/addgene_plasmids/196262.addgene-full.gb" }, @@ -83416,7 +105146,10 @@ "plasmid_name": "pDONR223_HTR3B_p.I118T", "sequence-type": "addgene-full", "addgene_id": "81730", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -83428,7 +105161,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK6_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189872", - "references": [], "kit": null, "file": "data/addgene_plasmids/189872.addgene-full.gb" }, @@ -83437,7 +105169,10 @@ "plasmid_name": "pDONR221-SLC2A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161315", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161315.addgene-full.gb" }, @@ -83446,7 +105181,10 @@ "plasmid_name": "pDONR223_CPZ_WT", "sequence-type": "addgene-full", "addgene_id": "81884", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -83458,7 +105196,10 @@ "plasmid_name": "p{3P3-mTurquoise::FRT-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182181", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182181.addgene-full.gb" }, @@ -83467,7 +105208,10 @@ "plasmid_name": "actc1b-mKate2-rab25a", "sequence-type": "addgene-full", "addgene_id": "109614", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109614.addgene-full.gb" }, @@ -83476,7 +105220,10 @@ "plasmid_name": "pclbw-mitoTagRFP", "sequence-type": "addgene-full", "addgene_id": "58425", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/24703695" + ], "kit": null, "file": "data/addgene_plasmids/58425.addgene-full.gb" }, @@ -83485,7 +105232,10 @@ "plasmid_name": "pDONR223-MCU", "sequence-type": "depositor-full", "addgene_id": "31726", - "references": [], + "references": [ + "https://doi.org/10.1038/nature10234", + "https://www.ncbi.nlm.nih.gov/pubmed/21685886" + ], "kit": null, "file": "data/addgene_plasmids/31726.depositor-full.gb" }, @@ -83494,7 +105244,10 @@ "plasmid_name": "pcDNA3_attR1-ORF-attR2-V2R-NTEV-TCS-GV-2xHA_DEST", "sequence-type": "addgene-full", "addgene_id": "194386", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194386.addgene-full.gb" }, @@ -83503,7 +105256,6 @@ "plasmid_name": "pLentiUBC CASP1[CARD]-mSG2 (inflammasome reporter)", "sequence-type": "addgene-full", "addgene_id": "228044", - "references": [], "kit": null, "file": "data/addgene_plasmids/228044.addgene-full.gb" }, @@ -83512,7 +105264,10 @@ "plasmid_name": "TFORF3408", "sequence-type": "addgene-full", "addgene_id": "144884", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144884.addgene-full.gb" }, @@ -83521,7 +105276,10 @@ "plasmid_name": "pCMU-PERr", "sequence-type": "depositor-full", "addgene_id": "61202", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61202.depositor-full.gb" }, @@ -83530,7 +105288,10 @@ "plasmid_name": "pDONR221-SLC10A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161121", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161121.addgene-full.gb" }, @@ -83539,7 +105300,10 @@ "plasmid_name": "pDONR223_WBSCR17_p.S194R", "sequence-type": "addgene-full", "addgene_id": "81504", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -83551,7 +105315,10 @@ "plasmid_name": "IG001: pMVP (L1-L4) TBG promoter", "sequence-type": "addgene-full", "addgene_id": "121689", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121689.addgene-full.gb" }, @@ -83560,7 +105327,10 @@ "plasmid_name": "pFRT-TO-DEST", "sequence-type": "addgene-full", "addgene_id": "106348", - "references": [], + "references": [ + "https://doi.org/10.1038/nature21690", + "https://www.ncbi.nlm.nih.gov/pubmed/28297718" + ], "kit": null, "file": "data/addgene_plasmids/106348.addgene-full.gb" }, @@ -83569,7 +105339,10 @@ "plasmid_name": "pDONR223_STAT6_WT", "sequence-type": "addgene-full", "addgene_id": "81950", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -83581,7 +105354,10 @@ "plasmid_name": "pKG-GW1-RER2", "sequence-type": "addgene-full", "addgene_id": "203170", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "file": "data/addgene_plasmids/203170.addgene-full.gb" }, @@ -83590,7 +105366,10 @@ "plasmid_name": "pBDPR", "sequence-type": "depositor-full", "addgene_id": "61598", - "references": [], + "references": [ + "https://doi.org/10.1016/j.neuron.2014.07.012", + "https://www.ncbi.nlm.nih.gov/pubmed/25123314" + ], "kit": null, "file": "data/addgene_plasmids/61598.depositor-full.gb" }, @@ -83599,7 +105378,6 @@ "plasmid_name": "pCW57.1_TStrp_HA_Ct", "sequence-type": "addgene-full", "addgene_id": "194066", - "references": [], "kit": null, "file": "data/addgene_plasmids/194066.addgene-full.gb" }, @@ -83608,7 +105386,10 @@ "plasmid_name": "W118-1_hRSK3(RPS6KA2)_K91A_K444A", "sequence-type": "addgene-full", "addgene_id": "180385", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "file": "data/addgene_plasmids/180385.addgene-full.gb" }, @@ -83617,7 +105398,10 @@ "plasmid_name": "pSLIK-GFP", "sequence-type": "addgene-full", "addgene_id": "66844", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + ], "kit": null, "file": "data/addgene_plasmids/66844.addgene-full.gb" }, @@ -83626,7 +105410,10 @@ "plasmid_name": "pGWB2-CYCD3;1", "sequence-type": "addgene-full", "addgene_id": "140750", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.16309", + "https://www.ncbi.nlm.nih.gov/pubmed/31679162" + ], "kit": null, "file": "data/addgene_plasmids/140750.addgene-full.gb" }, @@ -83635,7 +105422,10 @@ "plasmid_name": "pDONR223_STK11_p.G251F", "sequence-type": "addgene-full", "addgene_id": "82862", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82862.addgene-full.gb" }, @@ -83644,7 +105434,6 @@ "plasmid_name": "R777-E239 Hs.RASGRF1", "sequence-type": "depositor-full", "addgene_id": "70523", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -83656,7 +105445,10 @@ "plasmid_name": "pAG415GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14290", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -83668,7 +105460,10 @@ "plasmid_name": "pAG416-Gal-GA50", "sequence-type": "depositor-full", "addgene_id": "84903", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "file": "data/addgene_plasmids/84903.depositor-full.gb" }, @@ -83677,7 +105472,10 @@ "plasmid_name": "pRATIO2214", "sequence-type": "addgene-full", "addgene_id": "141303", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141303.addgene-full.gb" }, @@ -83686,7 +105484,10 @@ "plasmid_name": "pHAGE-PIK3CA-H1047Y", "sequence-type": "addgene-full", "addgene_id": "116501", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116501.addgene-full.gb" }, @@ -83695,7 +105496,10 @@ "plasmid_name": "pMXs-ms-c-Myc-V394D", "sequence-type": "depositor-full", "addgene_id": "50775", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "file": "data/addgene_plasmids/50775.depositor-full.gb" }, @@ -83704,7 +105508,10 @@ "plasmid_name": "pDONR221_SLC45A1", "sequence-type": "addgene-full", "addgene_id": "132289", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132289.addgene-full.gb" }, @@ -83713,7 +105520,10 @@ "plasmid_name": "pAAV-Gateway", "sequence-type": "addgene-full", "addgene_id": "32671", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32671.addgene-full.gb" }, @@ -83722,7 +105532,10 @@ "plasmid_name": "pDEST(frt)(ATG_V5-APEX2_noSTOP)", "sequence-type": "addgene-full", "addgene_id": "168207", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-018-0220-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30478324" + ], "kit": null, "file": "data/addgene_plasmids/168207.addgene-full.gb" }, @@ -83731,7 +105544,10 @@ "plasmid_name": "pCM5.45", "sequence-type": "depositor-full", "addgene_id": "19387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19387.depositor-full.gb" }, @@ -83740,7 +105556,10 @@ "plasmid_name": "pDe_Cas9_KANA_R390a", "sequence-type": "addgene-full", "addgene_id": "173758", - "references": [], + "references": [ + "https://doi.org/10.1093/hr/uhac147", + "https://www.ncbi.nlm.nih.gov/pubmed/36072839" + ], "kit": null, "file": "data/addgene_plasmids/173758.addgene-full.gb" }, @@ -83749,7 +105568,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj1b-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164946", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164946.addgene-full.gb" }, @@ -83758,7 +105580,10 @@ "plasmid_name": "Flag-HA-USP14", "sequence-type": "addgene-full", "addgene_id": "22569", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22569.addgene-full.gb" }, @@ -83767,7 +105592,9 @@ "plasmid_name": "pDRF'- AmTryoshka1;3-GS-L255I", "sequence-type": "addgene-full", "addgene_id": "100966", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "file": "data/addgene_plasmids/100966.addgene-full.gb" }, @@ -83776,7 +105603,10 @@ "plasmid_name": "pQLinkHD-SYNZIP5", "sequence-type": "depositor-full", "addgene_id": "80661", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "file": "data/addgene_plasmids/80661.depositor-full.gb" }, @@ -83785,7 +105615,10 @@ "plasmid_name": "pT2-cryR;nrp1bCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90134", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90134.addgene-full.gb" }, @@ -83794,7 +105627,10 @@ "plasmid_name": "mpeg:lamp1b-mCherry-stop; cmlc2:GFP", "sequence-type": "addgene-full", "addgene_id": "213739", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abp8321", + "https://www.ncbi.nlm.nih.gov/pubmed/36044568" + ], "kit": null, "file": "data/addgene_plasmids/213739.addgene-full.gb" }, @@ -83803,7 +105639,10 @@ "plasmid_name": "Silene_vulgaris _TyrRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202658", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "file": "data/addgene_plasmids/202658.addgene-full.gb" }, @@ -83812,7 +105651,10 @@ "plasmid_name": "ZFP36L2", "sequence-type": "addgene-full", "addgene_id": "156149", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156149.addgene-full.gb" }, @@ -83821,7 +105663,10 @@ "plasmid_name": "pAG304GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14159", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -83833,7 +105678,10 @@ "plasmid_name": "TMPRSS2", "sequence-type": "addgene-full", "addgene_id": "53887", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53887.addgene-full.gb" }, @@ -83842,7 +105690,6 @@ "plasmid_name": "Hs.KRAS4a G13D", "sequence-type": "depositor-full", "addgene_id": "83170", - "references": [], "kit": null, "file": "data/addgene_plasmids/83170.depositor-full.gb" }, @@ -83851,7 +105698,6 @@ "plasmid_name": "His8:MBP-tev-Arg-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83385", - "references": [], "kit": null, "file": "data/addgene_plasmids/83385.addgene-full.gb" }, @@ -83860,7 +105706,10 @@ "plasmid_name": "piggyBac_rtTA (4th_Gen)_Gateway_IRES_NGN2-2A-PURO_Synapsin-BirA. (pEHA1618)", "sequence-type": "addgene-full", "addgene_id": "209084", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/35688132" + ], "kit": null, "file": "data/addgene_plasmids/209084.addgene-full.gb" }, @@ -83869,7 +105718,10 @@ "plasmid_name": "FL-BCL2L1", "sequence-type": "depositor-full", "addgene_id": "78860", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "file": "data/addgene_plasmids/78860.depositor-full.gb" }, @@ -83878,7 +105730,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3B G120A", "sequence-type": "addgene-full", "addgene_id": "123093", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123093.addgene-full.gb" }, @@ -83887,7 +105742,10 @@ "plasmid_name": "pDONR221-SLC34A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161242", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161242.depositor-full.gb" }, @@ -83896,7 +105754,10 @@ "plasmid_name": "pShuttle-PR.Cre", "sequence-type": "addgene-full", "addgene_id": "192933", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "file": "data/addgene_plasmids/192933.addgene-full.gb" }, @@ -83905,7 +105766,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV NS2A", "sequence-type": "addgene-full", "addgene_id": "145363", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145363.addgene-full.gb" }, @@ -83914,7 +105778,10 @@ "plasmid_name": "pDONR223_PDCD1LG2_WT", "sequence-type": "addgene-full", "addgene_id": "82287", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82287.addgene-full.gb" }, @@ -83923,7 +105790,10 @@ "plasmid_name": "C238-E02: attB2r-BGHpolyA-attB3", "sequence-type": "addgene-full", "addgene_id": "162916", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -83935,7 +105805,10 @@ "plasmid_name": "pDONR223_TRAF5_WT", "sequence-type": "addgene-full", "addgene_id": "82167", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82167.addgene-full.gb" }, @@ -83944,7 +105817,10 @@ "plasmid_name": "pAAV2ss-EFS-GFP-synPolyA-U6-sgHTT1-U6-sgCas9", "sequence-type": "addgene-full", "addgene_id": "190903", - "references": [], + "references": [ + "https://doi.org/10.1016/j.omtm.2023.03.013", + "https://www.ncbi.nlm.nih.gov/pubmed/37090478" + ], "kit": null, "file": "data/addgene_plasmids/190903.addgene-full.gb" }, @@ -83953,7 +105829,10 @@ "plasmid_name": "Flag-HA-GFP", "sequence-type": "addgene-full", "addgene_id": "22612", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22612.addgene-full.gb" }, @@ -83962,7 +105841,10 @@ "plasmid_name": "pDONR221_SLCO1B7", "sequence-type": "addgene-full", "addgene_id": "132212", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132212.addgene-full.gb" }, @@ -83971,7 +105853,6 @@ "plasmid_name": "R777-E133 Hs.MLST8", "sequence-type": "depositor-full", "addgene_id": "70417", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -83983,7 +105864,10 @@ "plasmid_name": "Zed_vector_tol2_-2.1prox1a_1:EGFP_XCA:DsRed2", "sequence-type": "addgene-full", "addgene_id": "218205", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.202525", + "https://www.ncbi.nlm.nih.gov/pubmed/38722096" + ], "kit": null, "file": "data/addgene_plasmids/218205.addgene-full.gb" }, @@ -83992,7 +105876,10 @@ "plasmid_name": "pMuLE ENTR CMV eGFP L5-L2", "sequence-type": "depositor-full", "addgene_id": "62140", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62140.depositor-full.gb" }, @@ -84001,7 +105888,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NRF3", "sequence-type": "addgene-full", "addgene_id": "207815", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207815.addgene-full.gb" }, @@ -84010,7 +105900,10 @@ "plasmid_name": "pADH1-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209364", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209364.addgene-full.gb" }, @@ -84019,7 +105912,10 @@ "plasmid_name": "pME-QS (L1-L2)", "sequence-type": "depositor-full", "addgene_id": "61378", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2013.06.012", + "https://www.ncbi.nlm.nih.gov/pubmed/23792917" + ], "kit": null, "file": "data/addgene_plasmids/61378.depositor-full.gb" }, @@ -84028,7 +105924,10 @@ "plasmid_name": "Active Wnt5A-V5", "sequence-type": "depositor-full", "addgene_id": "43813", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43813.depositor-full.gb" }, @@ -84037,7 +105936,10 @@ "plasmid_name": "pDONR221_SLC25A11", "sequence-type": "addgene-full", "addgene_id": "132026", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132026.addgene-full.gb" }, @@ -84046,7 +105948,6 @@ "plasmid_name": "pcDNA3-VenusFlag-hTICAM1", "sequence-type": "addgene-full", "addgene_id": "197631", - "references": [], "kit": null, "file": "data/addgene_plasmids/197631.addgene-full.gb" }, @@ -84055,7 +105956,9 @@ "plasmid_name": "pMpGWB116", "sequence-type": "depositor-full", "addgene_id": "68570", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68570.depositor-full.gb" }, @@ -84064,7 +105967,10 @@ "plasmid_name": "pCMU-LEr", "sequence-type": "depositor-full", "addgene_id": "61185", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61185.depositor-full.gb" }, @@ -84073,7 +105979,10 @@ "plasmid_name": "pDONR223_RHOA_p.Y42S", "sequence-type": "addgene-full", "addgene_id": "81261", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -84085,7 +105994,10 @@ "plasmid_name": "Tol2-BetaActin-SecA5-YFP", "sequence-type": "addgene-full", "addgene_id": "105664", - "references": [], + "references": [ + "https://doi.org/10.3389/fimmu.2018.00607", + "https://www.ncbi.nlm.nih.gov/pubmed/29651289" + ], "kit": null, "file": "data/addgene_plasmids/105664.addgene-full.gb" }, @@ -84094,7 +106006,6 @@ "plasmid_name": "IDG_KCNG3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161644", - "references": [], "kit": null, "file": "data/addgene_plasmids/161644.addgene-full.gb" }, @@ -84103,7 +106014,10 @@ "plasmid_name": "pDONR207-MUM2sp-Citrine-ADPG2", "sequence-type": "addgene-full", "addgene_id": "170725", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcab077", + "https://www.ncbi.nlm.nih.gov/pubmed/34059917" + ], "kit": null, "file": "data/addgene_plasmids/170725.addgene-full.gb" }, @@ -84112,7 +106026,10 @@ "plasmid_name": "TDK promoter dCas9", "sequence-type": "addgene-full", "addgene_id": "113657", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.8b00426", + "https://www.ncbi.nlm.nih.gov/pubmed/30703321" + ], "kit": null, "file": "data/addgene_plasmids/113657.addgene-full.gb" }, @@ -84121,7 +106038,10 @@ "plasmid_name": "pTW080", "sequence-type": "addgene-full", "addgene_id": "115928", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115928.addgene-full.gb" }, @@ -84130,7 +106050,10 @@ "plasmid_name": "pENTR-HLA-B0702-His", "sequence-type": "addgene-full", "addgene_id": "104849", - "references": [], + "references": [ + "https://doi.org/10.4049/immunohorizons.1800029", + "https://www.ncbi.nlm.nih.gov/pubmed/31022685" + ], "kit": null, "file": "data/addgene_plasmids/104849.addgene-full.gb" }, @@ -84139,7 +106062,6 @@ "plasmid_name": "pLEX307-TMPRSS2-blast", "sequence-type": "addgene-full", "addgene_id": "158458", - "references": [], "kit": null, "file": "data/addgene_plasmids/158458.addgene-full.gb" }, @@ -84148,7 +106070,10 @@ "plasmid_name": "pHAGE-ERBB3", "sequence-type": "addgene-full", "addgene_id": "116735", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116735.addgene-full.gb" }, @@ -84157,7 +106082,10 @@ "plasmid_name": "pLIX403_RPS2_APOBEC_HA_P2A_mRuby_Capture1", "sequence-type": "addgene-full", "addgene_id": "194703", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-021-01128-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33963355" + ], "kit": null, "file": "data/addgene_plasmids/194703.addgene-full.gb" }, @@ -84166,7 +106094,10 @@ "plasmid_name": "pAD-CMV-STAT5A-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83251", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "file": "data/addgene_plasmids/83251.addgene-full.gb" }, @@ -84175,7 +106106,10 @@ "plasmid_name": "MAC_C_HSP7C", "sequence-type": "addgene-full", "addgene_id": "111667", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111667.addgene-full.gb" }, @@ -84184,7 +106118,10 @@ "plasmid_name": "pGWT35S-KOC207-MXMT", "sequence-type": "addgene-full", "addgene_id": "182730", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182730.addgene-full.gb" }, @@ -84193,7 +106130,6 @@ "plasmid_name": "R777-E175 Hs.PIK3R3", "sequence-type": "depositor-full", "addgene_id": "70459", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -84205,7 +106141,10 @@ "plasmid_name": "pDest_U6_A2_CG2_typeEGF_gRNA", "sequence-type": "addgene-full", "addgene_id": "199386", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "file": "data/addgene_plasmids/199386.addgene-full.gb" }, @@ -84214,7 +106153,10 @@ "plasmid_name": "pWZL Neo Myr Flag PDK1", "sequence-type": "addgene-full", "addgene_id": "20564", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20564.addgene-full.gb" }, @@ -84223,7 +106165,10 @@ "plasmid_name": "pLSL", "sequence-type": "depositor-full", "addgene_id": "51493", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51493.depositor-full.gb" }, @@ -84232,7 +106177,6 @@ "plasmid_name": "pMH-Halo tag", "sequence-type": "addgene-full", "addgene_id": "154144", - "references": [], "kit": null, "file": "data/addgene_plasmids/154144.addgene-full.gb" }, @@ -84241,7 +106185,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-1", "sequence-type": "depositor-full", "addgene_id": "46710", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46710.depositor-full.gb" }, @@ -84250,7 +106197,10 @@ "plasmid_name": "pDONR223_CYLC2_p.E152K", "sequence-type": "addgene-full", "addgene_id": "81388", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -84262,7 +106212,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0526-luc2", "sequence-type": "addgene-full", "addgene_id": "214656", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214656.addgene-full.gb" }, @@ -84271,7 +106224,10 @@ "plasmid_name": "pDONR223_PIK3CB_WT", "sequence-type": "addgene-full", "addgene_id": "82221", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82221.addgene-full.gb" }, @@ -84280,7 +106236,10 @@ "plasmid_name": "pLX311 DEDD", "sequence-type": "addgene-full", "addgene_id": "117745", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117745.addgene-full.gb" }, @@ -84289,7 +106248,10 @@ "plasmid_name": "pENTR223-BKRF2", "sequence-type": "addgene-full", "addgene_id": "195773", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195773.addgene-full.gb" }, @@ -84298,7 +106260,10 @@ "plasmid_name": "Flag-HA-YOD1", "sequence-type": "addgene-full", "addgene_id": "22554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22554.addgene-full.gb" }, @@ -84307,7 +106272,10 @@ "plasmid_name": "p5E-3x125bp-mnx1", "sequence-type": "addgene-full", "addgene_id": "169043", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2020.05.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32516597" + ], "kit": null, "file": "data/addgene_plasmids/169043.addgene-full.gb" }, @@ -84316,7 +106284,10 @@ "plasmid_name": "pDONR221_SLC41A2", "sequence-type": "addgene-full", "addgene_id": "132154", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132154.addgene-full.gb" }, @@ -84325,7 +106296,6 @@ "plasmid_name": "EEF1A2 - G70S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216586", - "references": [], "kit": null, "file": "data/addgene_plasmids/216586.addgene-full.gb" }, @@ -84334,7 +106304,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(KTM)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128672", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128672.addgene-full.gb" }, @@ -84343,7 +106316,10 @@ "plasmid_name": "pWS491", "sequence-type": "addgene-full", "addgene_id": "123035", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123035.addgene-full.gb" }, @@ -84352,7 +106328,10 @@ "plasmid_name": "pSYC-437", "sequence-type": "addgene-full", "addgene_id": "163829", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-15248-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32312952" + ], "kit": null, "file": "data/addgene_plasmids/163829.addgene-full.gb" }, @@ -84361,7 +106340,10 @@ "plasmid_name": "Ubi:Zebrabow", "sequence-type": "addgene-full", "addgene_id": "118219", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094631", + "https://www.ncbi.nlm.nih.gov/pubmed/23757414" + ], "kit": null, "file": "data/addgene_plasmids/118219.addgene-full.gb" }, @@ -84370,7 +106352,10 @@ "plasmid_name": "pLenti-PGK-RAP1A-E63-neo", "sequence-type": "addgene-full", "addgene_id": "156174", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156174.addgene-full.gb" }, @@ -84379,7 +106364,10 @@ "plasmid_name": "pENTR-L3-Csy4-Cas9-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141045", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141045.addgene-full.gb" }, @@ -84388,7 +106376,10 @@ "plasmid_name": "pLenti6.3-OGDH_wobble", "sequence-type": "addgene-full", "addgene_id": "110938", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1617922114", + "https://www.ncbi.nlm.nih.gov/pubmed/28396387" + ], "kit": null, "file": "data/addgene_plasmids/110938.addgene-full.gb" }, @@ -84397,7 +106388,10 @@ "plasmid_name": "pHAGE-PTPN11-T73I", "sequence-type": "addgene-full", "addgene_id": "116647", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116647.addgene-full.gb" }, @@ -84406,7 +106400,10 @@ "plasmid_name": "pKH160_FLAG-APEX2-YIPF4 LIR mut", "sequence-type": "addgene-full", "addgene_id": "214979", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "file": "data/addgene_plasmids/214979.addgene-full.gb" }, @@ -84415,7 +106412,10 @@ "plasmid_name": "pDL1", "sequence-type": "addgene-full", "addgene_id": "175881", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175881.addgene-full.gb" }, @@ -84424,7 +106424,10 @@ "plasmid_name": "pLenti-MTS-jAspSnFR3", "sequence-type": "addgene-full", "addgene_id": "203487", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "file": "data/addgene_plasmids/203487.addgene-full.gb" }, @@ -84433,7 +106436,10 @@ "plasmid_name": "pAG414GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14240", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -84445,7 +106451,9 @@ "plasmid_name": "pDONR207-MpTubulin beta 3", "sequence-type": "addgene-full", "addgene_id": "100594", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27703856" + ], "kit": null, "file": "data/addgene_plasmids/100594.addgene-full.gb" }, @@ -84454,7 +106462,10 @@ "plasmid_name": "pDONR223_RHOA_p.E40Q", "sequence-type": "addgene-full", "addgene_id": "81313", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -84466,7 +106477,6 @@ "plasmid_name": "pgLAP3", "sequence-type": "depositor-full", "addgene_id": "19704", - "references": [], "kit": null, "file": "data/addgene_plasmids/19704.depositor-full.gb" }, @@ -84475,7 +106485,10 @@ "plasmid_name": "pDest-658 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161882", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -84487,7 +106500,6 @@ "plasmid_name": "V5-K40R-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "195408", - "references": [], "kit": null, "file": "data/addgene_plasmids/195408.addgene-full.gb" }, @@ -84496,7 +106508,10 @@ "plasmid_name": "pLV-PLXNB2-mGAP", "sequence-type": "addgene-full", "addgene_id": "86241", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "file": "data/addgene_plasmids/86241.addgene-full.gb" }, @@ -84505,7 +106520,9 @@ "plasmid_name": "pMpGWB236", "sequence-type": "depositor-full", "addgene_id": "68627", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68627.depositor-full.gb" }, @@ -84514,7 +106531,10 @@ "plasmid_name": "pME-mKate-P2A-APEX2-NS", "sequence-type": "depositor-full", "addgene_id": "67670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67670.depositor-full.gb" }, @@ -84523,7 +106543,10 @@ "plasmid_name": "pHAGE-NRF2-E79Q", "sequence-type": "addgene-full", "addgene_id": "207828", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207828.addgene-full.gb" }, @@ -84532,7 +106555,10 @@ "plasmid_name": "pLCS106", "sequence-type": "addgene-full", "addgene_id": "209359", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209359.addgene-full.gb" }, @@ -84541,7 +106567,10 @@ "plasmid_name": "pENTR-L1-ESYN-L4", "sequence-type": "depositor-full", "addgene_id": "32580", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32580.depositor-full.gb" }, @@ -84550,7 +106579,10 @@ "plasmid_name": "R701-X08-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188)", "sequence-type": "addgene-full", "addgene_id": "159567", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159567.addgene-full.gb" }, @@ -84559,7 +106591,10 @@ "plasmid_name": "pCR8 JARID2", "sequence-type": "addgene-full", "addgene_id": "114443", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "file": "data/addgene_plasmids/114443.addgene-full.gb" }, @@ -84568,7 +106603,10 @@ "plasmid_name": "pcDNA4/TO/GFP-ZNF598", "sequence-type": "addgene-full", "addgene_id": "141191", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.03.006", + "https://www.ncbi.nlm.nih.gov/pubmed/30917308" + ], "kit": null, "file": "data/addgene_plasmids/141191.addgene-full.gb" }, @@ -84577,7 +106615,10 @@ "plasmid_name": "pHAGE-SRSF2", "sequence-type": "addgene-full", "addgene_id": "116793", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116793.addgene-full.gb" }, @@ -84586,7 +106627,10 @@ "plasmid_name": "pDONR223-SRPK1", "sequence-type": "addgene-full", "addgene_id": "23582", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -84598,7 +106642,10 @@ "plasmid_name": "pENTR-THT III", "sequence-type": "depositor-full", "addgene_id": "55791", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0097764", + "https://www.ncbi.nlm.nih.gov/pubmed/24841113" + ], "kit": null, "file": "data/addgene_plasmids/55791.depositor-full.gb" }, @@ -84607,7 +106654,10 @@ "plasmid_name": "pDONR221-Utp16", "sequence-type": "addgene-full", "addgene_id": "99985", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99985.addgene-full.gb" }, @@ -84616,7 +106666,6 @@ "plasmid_name": "pAG416GAL-3x-uC-HCoV-229E_3CL", "sequence-type": "addgene-full", "addgene_id": "201937", - "references": [], "kit": null, "file": "data/addgene_plasmids/201937.addgene-full.gb" }, @@ -84625,7 +106674,10 @@ "plasmid_name": "pHAGE-PIK3CA-E453A", "sequence-type": "addgene-full", "addgene_id": "116473", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116473.addgene-full.gb" }, @@ -84634,7 +106686,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 ORF3A", "sequence-type": "addgene-full", "addgene_id": "141271", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141271.addgene-full.gb" }, @@ -84643,7 +106698,10 @@ "plasmid_name": "pME Integrin beta 1b", "sequence-type": "addgene-full", "addgene_id": "105976", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.22689", + "https://www.ncbi.nlm.nih.gov/pubmed/28372636" + ], "kit": null, "file": "data/addgene_plasmids/105976.addgene-full.gb" }, @@ -84652,7 +106710,10 @@ "plasmid_name": "R717-X61-566: His6-MBP-tev-Hs.RAF1(52-192)", "sequence-type": "addgene-full", "addgene_id": "159687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-21422-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33608534" + ], "kit": null, "file": "data/addgene_plasmids/159687.addgene-full.gb" }, @@ -84661,7 +106722,10 @@ "plasmid_name": "PB-CT3G-ERP2-MG", "sequence-type": "addgene-full", "addgene_id": "175501", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175501.addgene-full.gb" }, @@ -84670,7 +106734,6 @@ "plasmid_name": "IDG_GABRP_OE_1", "sequence-type": "addgene-full", "addgene_id": "161679", - "references": [], "kit": null, "file": "data/addgene_plasmids/161679.addgene-full.gb" }, @@ -84679,7 +106742,10 @@ "plasmid_name": "pME-Gal80", "sequence-type": "depositor-full", "addgene_id": "51620", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.22734", + "https://www.ncbi.nlm.nih.gov/pubmed/21905164" + ], "kit": null, "file": "data/addgene_plasmids/51620.depositor-full.gb" }, @@ -84688,7 +106754,10 @@ "plasmid_name": "pENTR D-TOPO-C3_17", "sequence-type": "depositor-full", "addgene_id": "60263", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60263.depositor-full.gb" }, @@ -84697,7 +106766,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PIP5K1A_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214462", - "references": [], "kit": null, "file": "data/addgene_plasmids/214462.addgene-full.gb" }, @@ -84706,7 +106774,10 @@ "plasmid_name": "pCAG/ATP10B-HA", "sequence-type": "addgene-full", "addgene_id": "209216", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209216.addgene-full.gb" }, @@ -84715,7 +106786,6 @@ "plasmid_name": "pSMPUW_6.10_M3_Ef1a-HA-gateway-SV40", "sequence-type": "addgene-full", "addgene_id": "128446", - "references": [], "kit": null, "file": "data/addgene_plasmids/128446.addgene-full.gb" }, @@ -84724,7 +106794,6 @@ "plasmid_name": "pENTR-L4R1-TREX", "sequence-type": "addgene-full", "addgene_id": "139527", - "references": [], "kit": null, "file": "data/addgene_plasmids/139527.addgene-full.gb" }, @@ -84733,7 +106802,10 @@ "plasmid_name": "pDONR221_SLC28A1", "sequence-type": "addgene-full", "addgene_id": "132080", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132080.addgene-full.gb" }, @@ -84742,7 +106814,10 @@ "plasmid_name": "pAcBac1-Mb-Fluoro-Phe D6", "sequence-type": "addgene-full", "addgene_id": "197577", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-35761-w", + "https://www.ncbi.nlm.nih.gov/pubmed/36599844" + ], "kit": null, "file": "data/addgene_plasmids/197577.addgene-full.gb" }, @@ -84751,7 +106826,10 @@ "plasmid_name": "pHAGE-XPO1-E571K", "sequence-type": "addgene-full", "addgene_id": "116708", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116708.addgene-full.gb" }, @@ -84760,7 +106838,6 @@ "plasmid_name": "pLEX307-CTSB-G418", "sequence-type": "addgene-full", "addgene_id": "158465", - "references": [], "kit": null, "file": "data/addgene_plasmids/158465.addgene-full.gb" }, @@ -84769,7 +106846,9 @@ "plasmid_name": "pMpGWB404", "sequence-type": "depositor-full", "addgene_id": "68669", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68669.depositor-full.gb" }, @@ -84778,7 +106857,10 @@ "plasmid_name": "pDONR223_GABRA6_p.A322T", "sequence-type": "addgene-full", "addgene_id": "81605", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -84790,7 +106872,10 @@ "plasmid_name": "pDONR221-SLC25A45_STOP", "sequence-type": "addgene-full", "addgene_id": "161220", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161220.addgene-full.gb" }, @@ -84799,7 +106884,10 @@ "plasmid_name": "LR (bact: HyPer)", "sequence-type": "addgene-full", "addgene_id": "162069", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb2818", + "https://www.ncbi.nlm.nih.gov/pubmed/23934216" + ], "kit": null, "file": "data/addgene_plasmids/162069.addgene-full.gb" }, @@ -84808,7 +106896,10 @@ "plasmid_name": "Tet-myr-CSK K222R-GFP", "sequence-type": "depositor-full", "addgene_id": "83471", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201501025", + "https://www.ncbi.nlm.nih.gov/pubmed/26216901" + ], "kit": null, "file": "data/addgene_plasmids/83471.depositor-full.gb" }, @@ -84817,7 +106908,10 @@ "plasmid_name": "pMXs-Hu-L-Myc", "sequence-type": "addgene-full", "addgene_id": "26022", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "file": "data/addgene_plasmids/26022.addgene-full.gb" }, @@ -84826,7 +106920,10 @@ "plasmid_name": "TFORF2955", "sequence-type": "addgene-full", "addgene_id": "144431", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144431.addgene-full.gb" }, @@ -84835,7 +106932,10 @@ "plasmid_name": "actc1b-mKate2-EHD1b-dEH", "sequence-type": "addgene-full", "addgene_id": "109515", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109515.addgene-full.gb" }, @@ -84844,7 +106944,10 @@ "plasmid_name": "DMPK", "sequence-type": "addgene-full", "addgene_id": "155550", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155550.addgene-full.gb" }, @@ -84853,7 +106956,10 @@ "plasmid_name": "pDONR221_SLC17A4", "sequence-type": "addgene-full", "addgene_id": "131924", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131924.addgene-full.gb" }, @@ -84862,7 +106968,6 @@ "plasmid_name": "plix403-V5-N-mCherry", "sequence-type": "addgene-full", "addgene_id": "223956", - "references": [], "kit": null, "file": "data/addgene_plasmids/223956.addgene-full.gb" }, @@ -84871,7 +106976,6 @@ "plasmid_name": "R777-E187 Hs.PPP1CA", "sequence-type": "depositor-full", "addgene_id": "70471", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -84883,7 +106987,6 @@ "plasmid_name": "pLenti6.3/2K-NS4B", "sequence-type": "addgene-full", "addgene_id": "120845", - "references": [], "kit": null, "file": "data/addgene_plasmids/120845.addgene-full.gb" }, @@ -84892,7 +106995,10 @@ "plasmid_name": "pBABEpuro-ARAF", "sequence-type": "depositor-full", "addgene_id": "51076", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI72763", + "https://www.ncbi.nlm.nih.gov/pubmed/24569458" + ], "kit": null, "file": "data/addgene_plasmids/51076.depositor-full.gb" }, @@ -84901,7 +107007,10 @@ "plasmid_name": "TFORF3389", "sequence-type": "addgene-full", "addgene_id": "144865", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144865.addgene-full.gb" }, @@ -84910,7 +107019,10 @@ "plasmid_name": "pcDNA3_SP-HTR2A-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194367", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194367.addgene-full.gb" }, @@ -84919,7 +107031,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO-miR-30 L5-L4", "sequence-type": "depositor-full", "addgene_id": "62126", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62126.depositor-full.gb" }, @@ -84928,7 +107043,10 @@ "plasmid_name": "pGC193", "sequence-type": "depositor-full", "addgene_id": "19686", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19686.depositor-full.gb" }, @@ -84937,7 +107055,10 @@ "plasmid_name": "pHAGE-ERBB2-S974F", "sequence-type": "addgene-full", "addgene_id": "116351", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116351.addgene-full.gb" }, @@ -84946,7 +107067,10 @@ "plasmid_name": "pDONR223_PTEN_p.M35I", "sequence-type": "addgene-full", "addgene_id": "82818", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82818.addgene-full.gb" }, @@ -84955,7 +107079,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep78", "sequence-type": "addgene-full", "addgene_id": "136876", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136876.addgene-full.gb" }, @@ -84964,7 +107091,10 @@ "plasmid_name": "pDONR223_STC2_WT", "sequence-type": "addgene-full", "addgene_id": "82883", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82883.addgene-full.gb" }, @@ -84973,7 +107103,10 @@ "plasmid_name": "pDONR223_RIT1_p.R122L", "sequence-type": "addgene-full", "addgene_id": "82737", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -84985,7 +107118,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-EGFR NLS zeo", "sequence-type": "addgene-full", "addgene_id": "192337", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192337.addgene-full.gb" }, @@ -84994,7 +107130,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 E 27nt-del", "sequence-type": "addgene-full", "addgene_id": "153954", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153954.addgene-full.gb" }, @@ -85003,7 +107142,10 @@ "plasmid_name": "pLD-puro-Cc-PARK7V51G-VA", "sequence-type": "addgene-full", "addgene_id": "115183", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115183.addgene-full.gb" }, @@ -85012,7 +107154,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-5", "sequence-type": "depositor-full", "addgene_id": "46692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46692.depositor-full.gb" }, @@ -85021,7 +107166,10 @@ "plasmid_name": "pDONR223-ZNF32", "sequence-type": "addgene-full", "addgene_id": "88309", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88309.addgene-full.gb" }, @@ -85030,7 +107178,9 @@ "plasmid_name": "pMpGWB104", "sequence-type": "depositor-full", "addgene_id": "68558", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68558.depositor-full.gb" }, @@ -85039,7 +107189,6 @@ "plasmid_name": "pDONR221_ANKRD46_3UTR", "sequence-type": "depositor-full", "addgene_id": "65861", - "references": [], "kit": null, "file": "data/addgene_plasmids/65861.depositor-full.gb" }, @@ -85048,7 +107197,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP1_nostop", "sequence-type": "addgene-full", "addgene_id": "168518", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168518.addgene-full.gb" }, @@ -85057,7 +107209,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK16_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158173", - "references": [], "kit": null, "file": "data/addgene_plasmids/158173.addgene-full.gb" }, @@ -85066,7 +107217,10 @@ "plasmid_name": "pBi2FC-N-GW-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216144", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216144.addgene-full.gb" }, @@ -85075,7 +107229,10 @@ "plasmid_name": "pAG424GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14416", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -85087,7 +107244,10 @@ "plasmid_name": "pDONR223_STC2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82957", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82957.addgene-full.gb" }, @@ -85096,7 +107256,10 @@ "plasmid_name": "JZ901: pMVP (L5-L4) EF1a promoter", "sequence-type": "addgene-full", "addgene_id": "121727", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121727.addgene-full.gb" }, @@ -85105,7 +107268,10 @@ "plasmid_name": "pMuLE ENTR CMV Luc2 (FF-Luciferase) L5-L2", "sequence-type": "depositor-full", "addgene_id": "62168", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62168.depositor-full.gb" }, @@ -85114,7 +107280,10 @@ "plasmid_name": "pSLIK 3XFLAG-EGFP-NLS hygro", "sequence-type": "addgene-full", "addgene_id": "87781", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "file": "data/addgene_plasmids/87781.addgene-full.gb" }, @@ -85123,7 +107292,10 @@ "plasmid_name": "pDONR221-Neo", "sequence-type": "depositor-full", "addgene_id": "48993", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2180-9-90", + "https://www.ncbi.nlm.nih.gov/pubmed/19432966" + ], "kit": null, "file": "data/addgene_plasmids/48993.depositor-full.gb" }, @@ -85132,7 +107304,10 @@ "plasmid_name": "pMM4_14", "sequence-type": "addgene-full", "addgene_id": "183062", - "references": [], + "references": [ + "https://doi.org/10.1186/s12934-022-01938-7", + "https://www.ncbi.nlm.nih.gov/pubmed/36243715" + ], "kit": null, "file": "data/addgene_plasmids/183062.addgene-full.gb" }, @@ -85141,7 +107316,10 @@ "plasmid_name": "pHAGE-BRAF-H725Y", "sequence-type": "addgene-full", "addgene_id": "116165", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116165.addgene-full.gb" }, @@ -85150,7 +107328,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP16_nostop", "sequence-type": "addgene-full", "addgene_id": "168663", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168663.addgene-full.gb" }, @@ -85159,7 +107340,10 @@ "plasmid_name": "CRKRS", "sequence-type": "addgene-full", "addgene_id": "155484", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155484.addgene-full.gb" }, @@ -85168,7 +107352,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-POMK_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189893", - "references": [], "kit": null, "file": "data/addgene_plasmids/189893.addgene-full.gb" }, @@ -85177,7 +107360,6 @@ "plasmid_name": "pWALIUM10-GW-TurboID-V5", "sequence-type": "addgene-full", "addgene_id": "196283", - "references": [], "kit": null, "file": "data/addgene_plasmids/196283.addgene-full.gb" }, @@ -85186,7 +107368,10 @@ "plasmid_name": "pSLIK TT FLAG-HA RBFOX2", "sequence-type": "addgene-full", "addgene_id": "59769", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.235770.113", + "https://www.ncbi.nlm.nih.gov/pubmed/24637117" + ], "kit": null, "file": "data/addgene_plasmids/59769.addgene-full.gb" }, @@ -85195,7 +107380,10 @@ "plasmid_name": "p7130 pHAGE-P-CMVt-N-HA-GAW-KIF20A", "sequence-type": "addgene-full", "addgene_id": "100156", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100156.addgene-full.gb" }, @@ -85204,7 +107392,10 @@ "plasmid_name": "pDONR223_CD3E_WT", "sequence-type": "addgene-full", "addgene_id": "81865", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -85216,7 +107407,10 @@ "plasmid_name": "KA701: pMVP (L3-L2) HA tag + pA; RIP::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121808", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121808.addgene-full.gb" }, @@ -85225,7 +107419,6 @@ "plasmid_name": "Hs.KRAS4b E37G", "sequence-type": "depositor-full", "addgene_id": "83158", - "references": [], "kit": null, "file": "data/addgene_plasmids/83158.depositor-full.gb" }, @@ -85234,7 +107427,10 @@ "plasmid_name": "pAG416GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14171", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -85246,7 +107442,10 @@ "plasmid_name": "pDONR223_CNBD1_p.S372N", "sequence-type": "addgene-full", "addgene_id": "81431", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -85258,7 +107457,10 @@ "plasmid_name": "pAC1807_pmax-dCasRx-FKBP", "sequence-type": "addgene-full", "addgene_id": "118640", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118640.addgene-full.gb" }, @@ -85267,7 +107469,10 @@ "plasmid_name": "pLentiCMV Puro DEST p38KTRmCerulean3", "sequence-type": "depositor-full", "addgene_id": "59155", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59155.depositor-full.gb" }, @@ -85276,7 +107481,10 @@ "plasmid_name": "TFORF3129", "sequence-type": "addgene-full", "addgene_id": "144605", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144605.addgene-full.gb" }, @@ -85285,7 +107493,10 @@ "plasmid_name": "p3E-rab6ba", "sequence-type": "addgene-full", "addgene_id": "109721", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109721.addgene-full.gb" }, @@ -85294,7 +107505,9 @@ "plasmid_name": "pDEST17-His10-ccdB-SNAP", "sequence-type": "addgene-full", "addgene_id": "166146", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166146.addgene-full.gb" }, @@ -85303,7 +107516,10 @@ "plasmid_name": "pHAGE-EGFR-P596S", "sequence-type": "addgene-full", "addgene_id": "116285", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116285.addgene-full.gb" }, @@ -85312,7 +107528,10 @@ "plasmid_name": "pDONR221-kcnj9", "sequence-type": "addgene-full", "addgene_id": "173135", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173135.addgene-full.gb" }, @@ -85321,7 +107540,10 @@ "plasmid_name": "pLVpuro-CMV-N-EGFP", "sequence-type": "addgene-full", "addgene_id": "122848", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/122848.addgene-full.gb" }, @@ -85330,7 +107552,10 @@ "plasmid_name": "pDONR223_OR2M2_p.N42Y", "sequence-type": "addgene-full", "addgene_id": "81638", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -85342,7 +107567,10 @@ "plasmid_name": "OXSM_pLX307", "sequence-type": "addgene-full", "addgene_id": "98357", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98357.addgene-full.gb" }, @@ -85351,7 +107579,6 @@ "plasmid_name": "pET32a-DEST", "sequence-type": "depositor-full", "addgene_id": "84652", - "references": [], "kit": null, "file": "data/addgene_plasmids/84652.depositor-full.gb" }, @@ -85360,7 +107587,10 @@ "plasmid_name": "pFRT/TO/FLAG/HA-DEST TNRC6C", "sequence-type": "depositor-full", "addgene_id": "19885", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19885.depositor-full.gb" }, @@ -85369,7 +107599,10 @@ "plasmid_name": "pSLIK-IDH1-R132H-FLAG", "sequence-type": "addgene-full", "addgene_id": "66803", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + ], "kit": null, "file": "data/addgene_plasmids/66803.addgene-full.gb" }, @@ -85378,7 +107611,6 @@ "plasmid_name": "pDEST-Spe4-RfA-mNeonGreen-stop", "sequence-type": "addgene-full", "addgene_id": "186392", - "references": [], "kit": null, "file": "data/addgene_plasmids/186392.addgene-full.gb" }, @@ -85387,7 +107619,10 @@ "plasmid_name": "TFORF3382", "sequence-type": "addgene-full", "addgene_id": "144858", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144858.addgene-full.gb" }, @@ -85396,7 +107631,9 @@ "plasmid_name": "pMpGWB313", "sequence-type": "depositor-full", "addgene_id": "68641", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68641.depositor-full.gb" }, @@ -85405,7 +107642,10 @@ "plasmid_name": "pME-EGFP-NS", "sequence-type": "depositor-full", "addgene_id": "75341", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": null, "file": "data/addgene_plasmids/75341.depositor-full.gb" }, @@ -85414,7 +107654,10 @@ "plasmid_name": "pDONR221_SLC10A2", "sequence-type": "addgene-full", "addgene_id": "131919", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131919.addgene-full.gb" }, @@ -85423,7 +107666,10 @@ "plasmid_name": "pGMCK-P38-luxAB-DAS+4", "sequence-type": "depositor-full", "addgene_id": "27376", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkp015", + "https://www.ncbi.nlm.nih.gov/pubmed/19174563" + ], "kit": null, "file": "data/addgene_plasmids/27376.depositor-full.gb" }, @@ -85432,7 +107678,6 @@ "plasmid_name": "R777-E311 Hs.SHC3", "sequence-type": "depositor-full", "addgene_id": "70595", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -85444,7 +107689,10 @@ "plasmid_name": "pAG425GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14226", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -85456,7 +107704,10 @@ "plasmid_name": "pDONR223_KEAP1_p.E117K", "sequence-type": "addgene-full", "addgene_id": "82791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82791.addgene-full.gb" }, @@ -85465,7 +107716,10 @@ "plasmid_name": "pDONR223_BRAF_p.H574Q", "sequence-type": "addgene-full", "addgene_id": "82825", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82825.addgene-full.gb" }, @@ -85474,7 +107728,10 @@ "plasmid_name": "TFORF3515", "sequence-type": "depositor-full", "addgene_id": "144991", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144991.depositor-full.gb" }, @@ -85483,7 +107740,10 @@ "plasmid_name": "pDONR223_SV2C_p.R121Q", "sequence-type": "addgene-full", "addgene_id": "81543", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -85495,7 +107755,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_HindIII", "sequence-type": "depositor-full", "addgene_id": "65662", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65662.depositor-full.gb" }, @@ -85504,7 +107767,10 @@ "plasmid_name": "actc1b-mKate2-rab6ba", "sequence-type": "addgene-full", "addgene_id": "109653", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109653.addgene-full.gb" }, @@ -85513,7 +107779,10 @@ "plasmid_name": "pMSCV-SMYD2", "sequence-type": "addgene-full", "addgene_id": "85658", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.275529.115", + "https://www.ncbi.nlm.nih.gov/pubmed/26988419" + ], "kit": null, "file": "data/addgene_plasmids/85658.addgene-full.gb" }, @@ -85522,7 +107791,10 @@ "plasmid_name": "TFORF3301", "sequence-type": "addgene-full", "addgene_id": "144777", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144777.addgene-full.gb" }, @@ -85531,7 +107803,10 @@ "plasmid_name": "pDONR221_SLC25A4", "sequence-type": "addgene-full", "addgene_id": "131982", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131982.addgene-full.gb" }, @@ -85540,7 +107815,10 @@ "plasmid_name": "pMH-HA/Joseph2-Multitagged Plasmid", "sequence-type": "addgene-full", "addgene_id": "226726", - "references": [], + "references": [ + "https://doi.org/10.1080/07366205.2024.2343609", + "https://www.ncbi.nlm.nih.gov/pubmed/39185782" + ], "kit": null, "file": "data/addgene_plasmids/226726.addgene-full.gb" }, @@ -85549,7 +107827,10 @@ "plasmid_name": "TFORF3021", "sequence-type": "addgene-full", "addgene_id": "144497", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144497.addgene-full.gb" }, @@ -85558,7 +107839,10 @@ "plasmid_name": "5'-3xFLAG Gse1-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212056", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212056.addgene-full.gb" }, @@ -85567,7 +107851,10 @@ "plasmid_name": "pDONR223_PSG2_WT", "sequence-type": "addgene-full", "addgene_id": "81917", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -85579,7 +107866,10 @@ "plasmid_name": "pDONR221-SLC35G4_STOP", "sequence-type": "addgene-full", "addgene_id": "161286", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161286.addgene-full.gb" }, @@ -85588,7 +107878,10 @@ "plasmid_name": "pCAG-HA-Sox2-IP", "sequence-type": "addgene-full", "addgene_id": "13459", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M501423200", + "https://www.ncbi.nlm.nih.gov/pubmed/15863505" + ], "kit": null, "file": "data/addgene_plasmids/13459.addgene-full.gb" }, @@ -85597,7 +107890,10 @@ "plasmid_name": "TFORF3441", "sequence-type": "addgene-full", "addgene_id": "144917", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144917.addgene-full.gb" }, @@ -85606,7 +107902,10 @@ "plasmid_name": "pDONR223_POT1_p.G76V", "sequence-type": "addgene-full", "addgene_id": "81497", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -85618,7 +107917,10 @@ "plasmid_name": "MAC3-CDK8", "sequence-type": "addgene-full", "addgene_id": "222609", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "file": "data/addgene_plasmids/222609.addgene-full.gb" }, @@ -85627,7 +107929,10 @@ "plasmid_name": "pYPQ141-ZmUBI-RZ-Cas12j2", "sequence-type": "addgene-full", "addgene_id": "189781", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2022.100453", + "https://www.ncbi.nlm.nih.gov/pubmed/36127876" + ], "kit": null, "file": "data/addgene_plasmids/189781.addgene-full.gb" }, @@ -85636,7 +107941,10 @@ "plasmid_name": "pDONR221-SLC8A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161352", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161352.addgene-full.gb" }, @@ -85645,7 +107953,9 @@ "plasmid_name": "pME-lox-3xNLS-mCherry-V5-SV40pA-3xstop-lox (JDW 1232)", "sequence-type": "addgene-full", "addgene_id": "224522", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224522.addgene-full.gb" }, @@ -85654,7 +107964,10 @@ "plasmid_name": "pLenti PGK Neo DEST (w531-1)", "sequence-type": "addgene-full", "addgene_id": "19067", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/19067.addgene-full.gb" }, @@ -85663,7 +107976,10 @@ "plasmid_name": "pMMK ENTR 2", "sequence-type": "addgene-full", "addgene_id": "206261", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206261.addgene-full.gb" }, @@ -85672,7 +107988,10 @@ "plasmid_name": "pDONR223_HRAS_WT", "sequence-type": "addgene-full", "addgene_id": "81777", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -85696,7 +108015,10 @@ "plasmid_name": "TFORF3067", "sequence-type": "addgene-full", "addgene_id": "144543", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144543.addgene-full.gb" }, @@ -85705,7 +108027,10 @@ "plasmid_name": "pAG416GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14268", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -85717,7 +108042,10 @@ "plasmid_name": "pEntry_HCoV-229E-Spike", "sequence-type": "addgene-full", "addgene_id": "168971", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168971.addgene-full.gb" }, @@ -85726,7 +108054,9 @@ "plasmid_name": "pDONR221-PSMA3", "sequence-type": "addgene-full", "addgene_id": "166200", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166200.addgene-full.gb" }, @@ -85735,7 +108065,10 @@ "plasmid_name": "pDONOR223 RpH-LAMP1-3xFLAG", "sequence-type": "addgene-full", "addgene_id": "163019", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2020.1771858", + "https://www.ncbi.nlm.nih.gov/pubmed/32515674" + ], "kit": null, "file": "data/addgene_plasmids/163019.addgene-full.gb" }, @@ -85744,7 +108077,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-lsy-6", "sequence-type": "depositor-full", "addgene_id": "46738", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46738.depositor-full.gb" }, @@ -85753,7 +108089,10 @@ "plasmid_name": "pHAGE-BRAF-G563D", "sequence-type": "addgene-full", "addgene_id": "116158", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116158.addgene-full.gb" }, @@ -85762,7 +108101,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L5L4", "sequence-type": "depositor-full", "addgene_id": "113741", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -85774,7 +108116,10 @@ "plasmid_name": "pDONR223_MFAP4_WT", "sequence-type": "addgene-full", "addgene_id": "81858", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -85786,7 +108131,10 @@ "plasmid_name": "pHDT1:HDT1-GFP", "sequence-type": "addgene-full", "addgene_id": "108565", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "file": "data/addgene_plasmids/108565.addgene-full.gb" }, @@ -85795,7 +108143,9 @@ "plasmid_name": "pPB-cT3G-cERP2-TET1", "sequence-type": "addgene-full", "addgene_id": "222572", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222572.addgene-full.gb" }, @@ -85804,7 +108154,10 @@ "plasmid_name": "KZ401: pMVP (L3-L2) P2A-Neo + polyA", "sequence-type": "addgene-full", "addgene_id": "121781", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121781.addgene-full.gb" }, @@ -85813,7 +108166,10 @@ "plasmid_name": "KJ901: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS", "sequence-type": "addgene-full", "addgene_id": "121835", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121835.addgene-full.gb" }, @@ -85822,7 +108178,9 @@ "plasmid_name": "pPB-cT3G-cERP2-ZGLP1", "sequence-type": "addgene-full", "addgene_id": "222926", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "file": "data/addgene_plasmids/222926.addgene-full.gb" }, @@ -85831,7 +108189,10 @@ "plasmid_name": "TFORF3162", "sequence-type": "addgene-full", "addgene_id": "144638", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144638.addgene-full.gb" }, @@ -85840,7 +108201,6 @@ "plasmid_name": "R777-E091 Hs.FLT3", "sequence-type": "depositor-full", "addgene_id": "70375", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -85852,7 +108212,10 @@ "plasmid_name": "pHAGE-PIK3CA-G106_R108delGNR", "sequence-type": "addgene-full", "addgene_id": "116492", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116492.addgene-full.gb" }, @@ -85861,7 +108224,6 @@ "plasmid_name": "p667-UBC-PKMYT1-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135248", - "references": [], "kit": null, "file": "data/addgene_plasmids/135248.addgene-full.gb" }, @@ -85870,7 +108232,10 @@ "plasmid_name": "pSGE_722_S2-1_CGCG-to-HEY", "sequence-type": "depositor-full", "addgene_id": "71177", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71177.depositor-full.gb" }, @@ -85879,7 +108244,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S32", "sequence-type": "addgene-full", "addgene_id": "140309", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140309.addgene-full.gb" }, @@ -85888,7 +108256,10 @@ "plasmid_name": "pGWB502", "sequence-type": "depositor-full", "addgene_id": "74844", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74844.depositor-full.gb" }, @@ -85897,7 +108268,10 @@ "plasmid_name": "459 p3E-2A-nlsEGFPpA", "sequence-type": "addgene-full", "addgene_id": "195969", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195969.addgene-full.gb" }, @@ -85906,7 +108280,10 @@ "plasmid_name": "pGC267", "sequence-type": "depositor-full", "addgene_id": "19618", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19618.depositor-full.gb" }, @@ -85915,7 +108292,10 @@ "plasmid_name": "pLenti-Tet-MKK6(DD)-Puro", "sequence-type": "addgene-full", "addgene_id": "86094", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.197152", + "https://www.ncbi.nlm.nih.gov/pubmed/28446540" + ], "kit": null, "file": "data/addgene_plasmids/86094.addgene-full.gb" }, @@ -85924,7 +108304,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL1 WT", "sequence-type": "addgene-full", "addgene_id": "123100", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123100.addgene-full.gb" }, @@ -85933,7 +108316,10 @@ "plasmid_name": "pDONR221_SLC35G1", "sequence-type": "addgene-full", "addgene_id": "132061", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132061.addgene-full.gb" }, @@ -85942,7 +108328,10 @@ "plasmid_name": "pZA6", "sequence-type": "addgene-full", "addgene_id": "158484", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158484.addgene-full.gb" }, @@ -85951,7 +108340,6 @@ "plasmid_name": "pCSDest-ENTR-MCP-ADAR2-DD(E488Q/T490A)-V5", "sequence-type": "addgene-full", "addgene_id": "192714", - "references": [], "kit": null, "file": "data/addgene_plasmids/192714.addgene-full.gb" }, @@ -85960,7 +108348,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST RBM14-V5", "sequence-type": "depositor-full", "addgene_id": "69823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "file": "data/addgene_plasmids/69823.depositor-full.gb" }, @@ -85969,7 +108360,10 @@ "plasmid_name": "pDONR221-MFSD14B_STOP", "sequence-type": "depositor-full", "addgene_id": "161047", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161047.depositor-full.gb" }, @@ -85978,7 +108372,6 @@ "plasmid_name": "R777-E328 Hs.SPRY1-nostop", "sequence-type": "depositor-full", "addgene_id": "70612", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -85990,7 +108383,6 @@ "plasmid_name": "IDG_CACNG8_OE_1", "sequence-type": "addgene-full", "addgene_id": "161698", - "references": [], "kit": null, "file": "data/addgene_plasmids/161698.addgene-full.gb" }, @@ -85999,7 +108391,6 @@ "plasmid_name": "Hs.HRAS Q61R", "sequence-type": "depositor-full", "addgene_id": "83188", - "references": [], "kit": null, "file": "data/addgene_plasmids/83188.depositor-full.gb" }, @@ -86008,7 +108399,10 @@ "plasmid_name": "pHAGE-IDH1-P33S", "sequence-type": "addgene-full", "addgene_id": "116409", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116409.addgene-full.gb" }, @@ -86017,7 +108411,10 @@ "plasmid_name": "pTol1:uas-myc-act-map2k2b-2a-tdTomato", "sequence-type": "addgene-full", "addgene_id": "104721", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "file": "data/addgene_plasmids/104721.addgene-full.gb" }, @@ -86026,7 +108423,10 @@ "plasmid_name": "pENTR223-BBRF2", "sequence-type": "addgene-full", "addgene_id": "195792", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195792.addgene-full.gb" }, @@ -86035,7 +108435,10 @@ "plasmid_name": "YFN43", "sequence-type": "addgene-full", "addgene_id": "89487", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0046907", + "https://www.ncbi.nlm.nih.gov/pubmed/23056524" + ], "kit": null, "file": "data/addgene_plasmids/89487.addgene-full.gb" }, @@ -86044,7 +108447,10 @@ "plasmid_name": "C514-E09: attB5r-RU5u-FLAG-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162951", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -86056,7 +108462,10 @@ "plasmid_name": "pENTR223-BBRF1", "sequence-type": "addgene-full", "addgene_id": "195826", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195826.addgene-full.gb" }, @@ -86065,7 +108474,10 @@ "plasmid_name": "pDEST40-CES2A-\u0394C", "sequence-type": "addgene-full", "addgene_id": "200554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2023.04.011", + "https://www.ncbi.nlm.nih.gov/pubmed/37141889" + ], "kit": null, "file": "data/addgene_plasmids/200554.addgene-full.gb" }, @@ -86074,7 +108486,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-G418", "sequence-type": "addgene-full", "addgene_id": "158550", - "references": [], "kit": null, "file": "data/addgene_plasmids/158550.addgene-full.gb" }, @@ -86083,7 +108494,10 @@ "plasmid_name": "pQCXIN X2 DEST (w310-1)", "sequence-type": "depositor-full", "addgene_id": "17399", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17399.depositor-full.gb" }, @@ -86092,7 +108506,10 @@ "plasmid_name": "pCM1.153", "sequence-type": "depositor-full", "addgene_id": "21387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21387.depositor-full.gb" }, @@ -86101,7 +108518,10 @@ "plasmid_name": "pWZL Neo Myr Flag PKM2", "sequence-type": "addgene-full", "addgene_id": "20585", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20585.addgene-full.gb" }, @@ -86110,7 +108530,10 @@ "plasmid_name": "pDONR221-NIPA2", "sequence-type": "addgene-full", "addgene_id": "132255", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132255.addgene-full.gb" }, @@ -86119,7 +108542,10 @@ "plasmid_name": "pAG414GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14312", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -86131,7 +108557,10 @@ "plasmid_name": "S100B_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176952", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176952.addgene-full.gb" }, @@ -86140,7 +108569,10 @@ "plasmid_name": "pLenti6-CENP-A-mCherry", "sequence-type": "addgene-full", "addgene_id": "89767", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.194662", + "https://www.ncbi.nlm.nih.gov/pubmed/28232523" + ], "kit": null, "file": "data/addgene_plasmids/89767.addgene-full.gb" }, @@ -86149,7 +108581,10 @@ "plasmid_name": "pDONR223_MFAP4_p.Y55S", "sequence-type": "addgene-full", "addgene_id": "81369", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -86161,7 +108596,6 @@ "plasmid_name": "g13s pDONR", "sequence-type": "addgene-full", "addgene_id": "117444", - "references": [], "kit": null, "file": "data/addgene_plasmids/117444.addgene-full.gb" }, @@ -86170,7 +108604,10 @@ "plasmid_name": "pLgw EcoDam-V5-ELK4", "sequence-type": "addgene-full", "addgene_id": "98606", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98606.addgene-full.gb" }, @@ -86179,7 +108616,10 @@ "plasmid_name": "pENTR1A-NTAP-B (w323-1)", "sequence-type": "depositor-full", "addgene_id": "17403", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17403.depositor-full.gb" }, @@ -86188,7 +108628,6 @@ "plasmid_name": "pAG416GAL10-HRV-B14_3C", "sequence-type": "addgene-full", "addgene_id": "203466", - "references": [], "kit": null, "file": "data/addgene_plasmids/203466.addgene-full.gb" }, @@ -86197,7 +108636,10 @@ "plasmid_name": "pCFJ1360 - Intron GG3 - smu-1", "sequence-type": "addgene-full", "addgene_id": "159806", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159806.addgene-full.gb" }, @@ -86206,7 +108648,10 @@ "plasmid_name": "pBABEpuro-ERBB2 S310F", "sequence-type": "addgene-full", "addgene_id": "40991", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1203201109", + "https://www.ncbi.nlm.nih.gov/pubmed/22908275" + ], "kit": null, "file": "data/addgene_plasmids/40991.addgene-full.gb" }, @@ -86215,7 +108660,6 @@ "plasmid_name": "pFRT-TODestFLAGHA_HuC", "sequence-type": "depositor-full", "addgene_id": "65756", - "references": [], "kit": null, "file": "data/addgene_plasmids/65756.depositor-full.gb" }, @@ -86224,7 +108668,10 @@ "plasmid_name": "pHAGE-PIK3CA-V344A", "sequence-type": "addgene-full", "addgene_id": "116546", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116546.addgene-full.gb" }, @@ -86233,7 +108680,10 @@ "plasmid_name": "pME-BASU-NS", "sequence-type": "addgene-full", "addgene_id": "166565", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64631", + "https://www.ncbi.nlm.nih.gov/pubmed/33591275" + ], "kit": null, "file": "data/addgene_plasmids/166565.addgene-full.gb" }, @@ -86242,7 +108692,9 @@ "plasmid_name": "pcDNA5-3xFLAG-EGFP", "sequence-type": "addgene-full", "addgene_id": "209058", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209058.addgene-full.gb" }, @@ -86251,7 +108703,10 @@ "plasmid_name": "pEAHISPSVORF126", "sequence-type": "addgene-full", "addgene_id": "97021", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97021.addgene-full.gb" }, @@ -86272,7 +108727,10 @@ "plasmid_name": "pDEST15-Eps8L2_544-715", "sequence-type": "addgene-full", "addgene_id": "196540", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196540.addgene-full.gb" }, @@ -86281,7 +108739,9 @@ "plasmid_name": "pMpGWB134", "sequence-type": "depositor-full", "addgene_id": "68588", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68588.depositor-full.gb" }, @@ -86290,7 +108750,10 @@ "plasmid_name": "pDONR221-NIPAL4_STOP", "sequence-type": "addgene-full", "addgene_id": "161437", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161437.addgene-full.gb" }, @@ -86299,7 +108762,10 @@ "plasmid_name": "pDONR_P2R-P3_R2-Turbo-mVenus-STOP-L3", "sequence-type": "addgene-full", "addgene_id": "127354", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127354.addgene-full.gb" }, @@ -86308,7 +108774,10 @@ "plasmid_name": "pSC13", "sequence-type": "addgene-full", "addgene_id": "104787", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104787.addgene-full.gb" }, @@ -86317,7 +108786,6 @@ "plasmid_name": "pENTR-L5L2-mCherry-stop", "sequence-type": "addgene-full", "addgene_id": "139560", - "references": [], "kit": null, "file": "data/addgene_plasmids/139560.addgene-full.gb" }, @@ -86326,7 +108794,10 @@ "plasmid_name": "pTW065", "sequence-type": "addgene-full", "addgene_id": "115952", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115952.addgene-full.gb" }, @@ -86335,7 +108806,10 @@ "plasmid_name": "pCAG/ATP11C(E184Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209251", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209251.addgene-full.gb" }, @@ -86344,7 +108818,6 @@ "plasmid_name": "R777-E007 Hs.ALK", "sequence-type": "depositor-full", "addgene_id": "70291", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -86356,7 +108829,10 @@ "plasmid_name": "HJP-196-IVS-Syn21-NrdJ-1C-CreC-WPREUw", "sequence-type": "addgene-full", "addgene_id": "162477", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162477.addgene-full.gb" }, @@ -86365,7 +108841,6 @@ "plasmid_name": "pHAGE-CMV-Flag-GFP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135275", - "references": [], "kit": null, "file": "data/addgene_plasmids/135275.addgene-full.gb" }, @@ -86374,7 +108849,10 @@ "plasmid_name": "pYPQ291-E827A", "sequence-type": "addgene-full", "addgene_id": "129678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129678.addgene-full.gb" }, @@ -86383,7 +108861,10 @@ "plasmid_name": "pENTR-L1-CAMKII(0.4)-R5", "sequence-type": "depositor-full", "addgene_id": "32578", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32578.depositor-full.gb" }, @@ -86392,7 +108873,10 @@ "plasmid_name": "pRP(Exp)-CMV> ORF_924bp (Azgp1):T2A:dTomato:IRES:Puro", "sequence-type": "addgene-full", "addgene_id": "110830", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.201701465RR", + "https://www.ncbi.nlm.nih.gov/pubmed/29570397" + ], "kit": null, "file": "data/addgene_plasmids/110830.addgene-full.gb" }, @@ -86401,7 +108885,6 @@ "plasmid_name": "Enterovirus A71 2A protease", "sequence-type": "addgene-full", "addgene_id": "204812", - "references": [], "kit": null, "file": "data/addgene_plasmids/204812.addgene-full.gb" }, @@ -86410,7 +108893,6 @@ "plasmid_name": "pTwist-ENTR-rbm11-202", "sequence-type": "addgene-full", "addgene_id": "192729", - "references": [], "kit": null, "file": "data/addgene_plasmids/192729.addgene-full.gb" }, @@ -86419,7 +108901,6 @@ "plasmid_name": "pLENTI_TetOn_Hu_MAD2(WT)", "sequence-type": "addgene-full", "addgene_id": "136347", - "references": [], "kit": null, "file": "data/addgene_plasmids/136347.addgene-full.gb" }, @@ -86428,7 +108909,10 @@ "plasmid_name": "MAC_N_FBRL", "sequence-type": "addgene-full", "addgene_id": "111686", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111686.addgene-full.gb" }, @@ -86437,7 +108921,10 @@ "plasmid_name": "pDL107", "sequence-type": "addgene-full", "addgene_id": "175912", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175912.addgene-full.gb" }, @@ -86446,7 +108933,10 @@ "plasmid_name": "pEZYshuttle", "sequence-type": "depositor-full", "addgene_id": "18703", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18703.depositor-full.gb" }, @@ -86455,7 +108945,10 @@ "plasmid_name": "pDONR223_B2M_p.M1R", "sequence-type": "addgene-full", "addgene_id": "81280", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -86467,7 +108960,6 @@ "plasmid_name": "pAG416GAL-3x-uC-ccdB-6stop", "sequence-type": "addgene-full", "addgene_id": "203514", - "references": [], "kit": null, "file": "data/addgene_plasmids/203514.addgene-full.gb" }, @@ -86476,7 +108968,10 @@ "plasmid_name": "pLEX307 hDVL1", "sequence-type": "addgene-full", "addgene_id": "102863", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "file": "data/addgene_plasmids/102863.addgene-full.gb" }, @@ -86485,7 +108980,10 @@ "plasmid_name": "MAC-CTSL", "sequence-type": "addgene-full", "addgene_id": "172414", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172414.addgene-full.gb" }, @@ -86494,7 +108992,10 @@ "plasmid_name": "Flag-HA-USP50", "sequence-type": "addgene-full", "addgene_id": "22588", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22588.addgene-full.gb" }, @@ -86503,7 +109004,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 Y635A", "sequence-type": "addgene-full", "addgene_id": "175772", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175772.addgene-full.gb" }, @@ -86512,7 +109016,10 @@ "plasmid_name": "pcDNA5FRT/TO-VCPIP1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113482", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113482.addgene-full.gb" }, @@ -86521,7 +109028,10 @@ "plasmid_name": "pYPQ167", "sequence-type": "depositor-full", "addgene_id": "69309", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69309.depositor-full.gb" }, @@ -86530,7 +109040,10 @@ "plasmid_name": "GFP-BAZ1B", "sequence-type": "addgene-full", "addgene_id": "65372", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65372.addgene-full.gb" }, @@ -86539,7 +109052,10 @@ "plasmid_name": "pHAGE-PIK3R1-N564D", "sequence-type": "addgene-full", "addgene_id": "116600", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116600.addgene-full.gb" }, @@ -86548,7 +109064,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-WWC1", "sequence-type": "addgene-full", "addgene_id": "172994", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172994.addgene-full.gb" }, @@ -86557,7 +109076,10 @@ "plasmid_name": "pDONR221_SLCO1B1", "sequence-type": "addgene-full", "addgene_id": "132188", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132188.addgene-full.gb" }, @@ -86566,7 +109088,10 @@ "plasmid_name": "MNEAP1exp", "sequence-type": "addgene-full", "addgene_id": "131021", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "file": "data/addgene_plasmids/131021.addgene-full.gb" }, @@ -86575,7 +109100,10 @@ "plasmid_name": "pDONR221-SFXN3", "sequence-type": "addgene-full", "addgene_id": "132268", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132268.addgene-full.gb" }, @@ -86584,7 +109112,10 @@ "plasmid_name": "pGGEV_-1_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49296", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -86596,7 +109127,9 @@ "plasmid_name": "pMpGWB426", "sequence-type": "depositor-full", "addgene_id": "68691", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68691.depositor-full.gb" }, @@ -86605,7 +109138,10 @@ "plasmid_name": "MAC_C_CSF1R", "sequence-type": "addgene-full", "addgene_id": "187767", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187767.addgene-full.gb" }, @@ -86614,7 +109150,10 @@ "plasmid_name": "pDONR223_PSG2_p.H245Y", "sequence-type": "addgene-full", "addgene_id": "81354", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -86626,7 +109165,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK32C_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170610", - "references": [], "kit": null, "file": "data/addgene_plasmids/170610.addgene-full.gb" }, @@ -86635,7 +109173,6 @@ "plasmid_name": "R777-E261 Hs.RASSF5", "sequence-type": "depositor-full", "addgene_id": "70545", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -86647,7 +109184,10 @@ "plasmid_name": "pSGE_711_OSC-fkh_dCP", "sequence-type": "depositor-full", "addgene_id": "71220", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71220.depositor-full.gb" }, @@ -86656,7 +109196,10 @@ "plasmid_name": "BirA-Myc_N_PAX6", "sequence-type": "addgene-full", "addgene_id": "167721", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167721.addgene-full.gb" }, @@ -86665,7 +109208,10 @@ "plasmid_name": "pDONR223_BRAF_p.V600E", "sequence-type": "addgene-full", "addgene_id": "82186", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82186.addgene-full.gb" }, @@ -86674,7 +109220,6 @@ "plasmid_name": "Phage-PGK-FLAG-HA-T(WT)", "sequence-type": "addgene-full", "addgene_id": "181737", - "references": [], "kit": null, "file": "data/addgene_plasmids/181737.addgene-full.gb" }, @@ -86683,7 +109228,10 @@ "plasmid_name": "pDONR221 Spb1", "sequence-type": "depositor-full", "addgene_id": "63777", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63777.depositor-full.gb" }, @@ -86692,7 +109240,10 @@ "plasmid_name": "pDONR223-ZNF280C", "sequence-type": "addgene-full", "addgene_id": "88658", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88658.addgene-full.gb" }, @@ -86701,7 +109252,6 @@ "plasmid_name": "CTNNB1 - T551M in pENTR", "sequence-type": "addgene-full", "addgene_id": "216621", - "references": [], "kit": null, "file": "data/addgene_plasmids/216621.addgene-full.gb" }, @@ -86710,7 +109260,10 @@ "plasmid_name": "pENTR-QK1", "sequence-type": "addgene-full", "addgene_id": "16183", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.03.032", + "https://www.ncbi.nlm.nih.gov/pubmed/16713569" + ], "kit": null, "file": "data/addgene_plasmids/16183.addgene-full.gb" }, @@ -86719,7 +109272,10 @@ "plasmid_name": "pDONR221_SLC30A2", "sequence-type": "addgene-full", "addgene_id": "132113", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132113.addgene-full.gb" }, @@ -86728,7 +109284,10 @@ "plasmid_name": "pDONR223 LC3B WT", "sequence-type": "addgene-full", "addgene_id": "123072", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123072.addgene-full.gb" }, @@ -86737,7 +109296,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-miniTurbo-NES-YFP", "sequence-type": "addgene-full", "addgene_id": "127369", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127369.addgene-full.gb" }, @@ -86746,7 +109308,10 @@ "plasmid_name": "pcDNA3_ERBB3-NTEV-tcs-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "214611", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214611.addgene-full.gb" }, @@ -86755,7 +109320,6 @@ "plasmid_name": "pCM3.10", "sequence-type": "depositor-full", "addgene_id": "19604", - "references": [], "kit": null, "file": "data/addgene_plasmids/19604.depositor-full.gb" }, @@ -86764,7 +109328,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS-Gln93,Ala271", "sequence-type": "addgene-full", "addgene_id": "158632", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158632.addgene-full.gb" }, @@ -86773,7 +109340,6 @@ "plasmid_name": "BRAF in pENTR", "sequence-type": "addgene-full", "addgene_id": "216605", - "references": [], "kit": null, "file": "data/addgene_plasmids/216605.addgene-full.gb" }, @@ -86782,7 +109348,10 @@ "plasmid_name": "pWZL Neo Myr Flag ITK", "sequence-type": "addgene-full", "addgene_id": "20507", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20507.addgene-full.gb" }, @@ -86791,7 +109360,10 @@ "plasmid_name": "pGWB516", "sequence-type": "depositor-full", "addgene_id": "74858", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74858.depositor-full.gb" }, @@ -86800,7 +109372,10 @@ "plasmid_name": "E2_pENTR_R4R3_T CTP", "sequence-type": "addgene-full", "addgene_id": "171736", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171736.addgene-full.gb" }, @@ -86809,7 +109384,10 @@ "plasmid_name": "pAG416GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14340", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -86821,7 +109399,10 @@ "plasmid_name": "pME_GGWDest-", "sequence-type": "depositor-full", "addgene_id": "49320", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -86833,7 +109414,6 @@ "plasmid_name": "pAG426-GAL-TAF15", "sequence-type": "addgene-full", "addgene_id": "181713", - "references": [], "kit": null, "file": "data/addgene_plasmids/181713.addgene-full.gb" }, @@ -86842,7 +109422,10 @@ "plasmid_name": "pKH162_FLAG-APEX2-YIPF3 LIR mut", "sequence-type": "addgene-full", "addgene_id": "214981", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "file": "data/addgene_plasmids/214981.addgene-full.gb" }, @@ -86851,7 +109434,10 @@ "plasmid_name": "pFRT/TO/RFP-DDX54", "sequence-type": "depositor-full", "addgene_id": "97061", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.218438.116", + "https://www.ncbi.nlm.nih.gov/pubmed/28596291" + ], "kit": null, "file": "data/addgene_plasmids/97061.depositor-full.gb" }, @@ -86860,7 +109446,10 @@ "plasmid_name": "pLX307 MCL1", "sequence-type": "addgene-full", "addgene_id": "117726", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117726.addgene-full.gb" }, @@ -86869,7 +109458,6 @@ "plasmid_name": "R777-E085 Hs.FGFR2", "sequence-type": "depositor-full", "addgene_id": "70369", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -86881,7 +109469,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0482-luc2", "sequence-type": "addgene-full", "addgene_id": "214635", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214635.addgene-full.gb" }, @@ -86890,7 +109481,10 @@ "plasmid_name": "pDONR223_IKBKG_WT", "sequence-type": "addgene-full", "addgene_id": "82242", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82242.addgene-full.gb" }, @@ -86899,7 +109493,10 @@ "plasmid_name": "pINDUCER-21-LCOR", "sequence-type": "addgene-full", "addgene_id": "97038", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "file": "data/addgene_plasmids/97038.addgene-full.gb" }, @@ -86908,7 +109505,10 @@ "plasmid_name": "pWS033", "sequence-type": "addgene-full", "addgene_id": "123056", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123056.addgene-full.gb" }, @@ -86917,7 +109517,10 @@ "plasmid_name": "pDONR221_SLC30A1", "sequence-type": "addgene-full", "addgene_id": "132137", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132137.addgene-full.gb" }, @@ -86926,7 +109529,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-Puro", "sequence-type": "addgene-full", "addgene_id": "158549", - "references": [], "kit": null, "file": "data/addgene_plasmids/158549.addgene-full.gb" }, @@ -86935,7 +109537,10 @@ "plasmid_name": "pHAGE-PTEN-L247_P248delLP", "sequence-type": "addgene-full", "addgene_id": "116624", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116624.addgene-full.gb" }, @@ -86944,7 +109549,10 @@ "plasmid_name": "pUC-DEST-hSOX2-EGFP-PuroTK", "sequence-type": "addgene-full", "addgene_id": "141026", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141026.addgene-full.gb" }, @@ -86953,7 +109561,10 @@ "plasmid_name": "pAM-PAT-ProCDKA;1::CDKA;1:YFP", "sequence-type": "depositor-full", "addgene_id": "80685", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05770", + "https://www.ncbi.nlm.nih.gov/pubmed/17468744" + ], "kit": null, "file": "data/addgene_plasmids/80685.depositor-full.gb" }, @@ -86962,7 +109573,6 @@ "plasmid_name": "lentiGuide-Puro PRMT5-CRISPRi", "sequence-type": "addgene-full", "addgene_id": "164637", - "references": [], "kit": null, "file": "data/addgene_plasmids/164637.addgene-full.gb" }, @@ -86971,7 +109581,10 @@ "plasmid_name": "C513-E06: attB5r-pA-polyhedrinp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162948", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -86983,7 +109596,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-LGALS3", "sequence-type": "addgene-full", "addgene_id": "175756", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175756.addgene-full.gb" }, @@ -86992,7 +109608,10 @@ "plasmid_name": "pDONR223_HAUS1_p.A102V", "sequence-type": "addgene-full", "addgene_id": "81370", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -87004,7 +109623,10 @@ "plasmid_name": "MAC_N_LHX8", "sequence-type": "addgene-full", "addgene_id": "187743", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187743.addgene-full.gb" }, @@ -87013,7 +109635,10 @@ "plasmid_name": "pDONR223_MAP2K1_WT", "sequence-type": "addgene-full", "addgene_id": "82139", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82139.addgene-full.gb" }, @@ -87022,7 +109647,10 @@ "plasmid_name": "pCFJ2345 - Intron GG2 - 250bp no PATC", "sequence-type": "addgene-full", "addgene_id": "159884", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159884.addgene-full.gb" }, @@ -87031,7 +109659,10 @@ "plasmid_name": "pMLS260", "sequence-type": "depositor-full", "addgene_id": "73685", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.184275", + "https://www.ncbi.nlm.nih.gov/pubmed/26837755" + ], "kit": null, "file": "data/addgene_plasmids/73685.depositor-full.gb" }, @@ -87040,7 +109671,10 @@ "plasmid_name": "pENTR-R4R3-mEGFP-N", "sequence-type": "addgene-full", "addgene_id": "113746", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -87052,7 +109686,10 @@ "plasmid_name": "LIIalpha R 1-2", "sequence-type": "depositor-full", "addgene_id": "54347", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54347.depositor-full.gb" }, @@ -87061,7 +109698,10 @@ "plasmid_name": "pUASt-FMW-attB-AthHen1", "sequence-type": "addgene-full", "addgene_id": "104958", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4610", + "https://www.ncbi.nlm.nih.gov/pubmed/29481550" + ], "kit": null, "file": "data/addgene_plasmids/104958.addgene-full.gb" }, @@ -87070,7 +109710,10 @@ "plasmid_name": "pGWB422", "sequence-type": "depositor-full", "addgene_id": "74816", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74816.depositor-full.gb" }, @@ -87079,7 +109722,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term FBL", "sequence-type": "addgene-full", "addgene_id": "187577", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187577.addgene-full.gb" }, @@ -87088,7 +109734,6 @@ "plasmid_name": "EFR WT", "sequence-type": "addgene-full", "addgene_id": "102413", - "references": [], "kit": null, "file": "data/addgene_plasmids/102413.addgene-full.gb" }, @@ -87097,7 +109742,10 @@ "plasmid_name": "pHAGE-USP32__EPHA1", "sequence-type": "addgene-full", "addgene_id": "116844", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116844.addgene-full.gb" }, @@ -87106,7 +109754,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16-18 E7 Chimera C", "sequence-type": "addgene-full", "addgene_id": "191544", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "file": "data/addgene_plasmids/191544.addgene-full.gb" }, @@ -87115,7 +109766,10 @@ "plasmid_name": "TurboID-mNeongreen-3xFLAG fusion pos3", "sequence-type": "addgene-full", "addgene_id": "172864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2021.101094", + "https://www.ncbi.nlm.nih.gov/pubmed/34416233" + ], "kit": null, "file": "data/addgene_plasmids/172864.addgene-full.gb" }, @@ -87124,7 +109778,10 @@ "plasmid_name": "pDONR221_SLC2A6", "sequence-type": "addgene-full", "addgene_id": "132078", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132078.addgene-full.gb" }, @@ -87133,7 +109790,10 @@ "plasmid_name": "pDEST-CMV GFP-GABARAPL1 G116", "sequence-type": "addgene-full", "addgene_id": "123119", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123119.addgene-full.gb" }, @@ -87142,7 +109802,10 @@ "plasmid_name": "mTALEAD 16S rRNA-1131T8C", "sequence-type": "addgene-full", "addgene_id": "210835", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "file": "data/addgene_plasmids/210835.addgene-full.gb" }, @@ -87151,7 +109814,6 @@ "plasmid_name": "R777-E043 Hs.DUSP6", "sequence-type": "depositor-full", "addgene_id": "70327", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -87163,7 +109825,10 @@ "plasmid_name": "pHAGE-IDH1-R132C", "sequence-type": "addgene-full", "addgene_id": "116410", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116410.addgene-full.gb" }, @@ -87172,7 +109837,10 @@ "plasmid_name": "pDEST myc MOV10 D645N", "sequence-type": "depositor-full", "addgene_id": "51720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.03.017", + "https://www.ncbi.nlm.nih.gov/pubmed/24726324" + ], "kit": null, "file": "data/addgene_plasmids/51720.depositor-full.gb" }, @@ -87181,7 +109849,10 @@ "plasmid_name": "MSCV Puro SCRIB P305L", "sequence-type": "addgene-full", "addgene_id": "88887", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3413", + "https://www.ncbi.nlm.nih.gov/pubmed/27694890" + ], "kit": null, "file": "data/addgene_plasmids/88887.addgene-full.gb" }, @@ -87190,7 +109861,10 @@ "plasmid_name": "pLenti-Zyxin-E (aa1-138)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187697", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187697.addgene-full.gb" }, @@ -87199,7 +109873,6 @@ "plasmid_name": "IDG_KCNS1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161681", - "references": [], "kit": null, "file": "data/addgene_plasmids/161681.addgene-full.gb" }, @@ -87208,7 +109881,6 @@ "plasmid_name": "R777-E356 Hs.TSC2-nostop", "sequence-type": "depositor-full", "addgene_id": "70640", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -87220,7 +109892,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S32-KD", "sequence-type": "addgene-full", "addgene_id": "140310", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140310.addgene-full.gb" }, @@ -87229,7 +109904,6 @@ "plasmid_name": "p667-UBC-TLK2-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135251", - "references": [], "kit": null, "file": "data/addgene_plasmids/135251.addgene-full.gb" }, @@ -87238,7 +109912,10 @@ "plasmid_name": "PB-Neo-TetO-Cdk12_Nterm_FlagHa", "sequence-type": "addgene-full", "addgene_id": "127179", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0758-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30487607" + ], "kit": null, "file": "data/addgene_plasmids/127179.addgene-full.gb" }, @@ -87247,7 +109924,9 @@ "plasmid_name": "pMpGWB203", "sequence-type": "depositor-full", "addgene_id": "68594", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68594.depositor-full.gb" }, @@ -87256,7 +109935,10 @@ "plasmid_name": "pDONR221-NPC1L1", "sequence-type": "addgene-full", "addgene_id": "132303", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132303.addgene-full.gb" }, @@ -87265,7 +109947,6 @@ "plasmid_name": "pENTR-R2L3-pA-PGKpacDeltaTK-pA1", "sequence-type": "addgene-full", "addgene_id": "139544", - "references": [], "kit": null, "file": "data/addgene_plasmids/139544.addgene-full.gb" }, @@ -87274,7 +109955,10 @@ "plasmid_name": "EHD2-mEGFP", "sequence-type": "depositor-full", "addgene_id": "45932", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2012.98", + "https://www.ncbi.nlm.nih.gov/pubmed/22505029" + ], "kit": null, "file": "data/addgene_plasmids/45932.depositor-full.gb" }, @@ -87283,7 +109967,9 @@ "plasmid_name": "pDestTol2-QUAS:GFP", "sequence-type": "addgene-full", "addgene_id": "184811", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "file": "data/addgene_plasmids/184811.addgene-full.gb" }, @@ -87292,7 +109978,10 @@ "plasmid_name": "460 p3E-2A-mCherrypA", "sequence-type": "addgene-full", "addgene_id": "195970", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195970.addgene-full.gb" }, @@ -87301,7 +109990,6 @@ "plasmid_name": "pAG416GAL-EYFP", "sequence-type": "addgene-full", "addgene_id": "201792", - "references": [], "kit": null, "file": "data/addgene_plasmids/201792.addgene-full.gb" }, @@ -87310,7 +109998,10 @@ "plasmid_name": "ph2p", "sequence-type": "depositor-full", "addgene_id": "22520", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "file": "data/addgene_plasmids/22520.depositor-full.gb" }, @@ -87319,7 +110010,10 @@ "plasmid_name": "p5E-kdrl", "sequence-type": "depositor-full", "addgene_id": "78687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2007.01.023", + "https://www.ncbi.nlm.nih.gov/pubmed/17306248" + ], "kit": null, "file": "data/addgene_plasmids/78687.depositor-full.gb" }, @@ -87328,7 +110022,10 @@ "plasmid_name": "pHAGE-PIK3CD-A396T", "sequence-type": "addgene-full", "addgene_id": "116562", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116562.addgene-full.gb" }, @@ -87337,7 +110034,10 @@ "plasmid_name": "pDONR223_LIG1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83006", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83006.addgene-full.gb" }, @@ -87346,7 +110046,10 @@ "plasmid_name": "tetO-ID1", "sequence-type": "addgene-full", "addgene_id": "170692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170692.addgene-full.gb" }, @@ -87355,7 +110058,10 @@ "plasmid_name": "pSEM237 - pEXP[Prpl-3 | histamine | rpl-3 UTR]", "sequence-type": "addgene-full", "addgene_id": "159796", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000349", + "https://www.ncbi.nlm.nih.gov/pubmed/33437931" + ], "kit": null, "file": "data/addgene_plasmids/159796.addgene-full.gb" }, @@ -87364,7 +110070,6 @@ "plasmid_name": "R777-E233 Hs.RASAL1", "sequence-type": "depositor-full", "addgene_id": "70517", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -87376,7 +110081,10 @@ "plasmid_name": "pT2-cryR;clecl14aCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90157", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90157.addgene-full.gb" }, @@ -87385,7 +110093,10 @@ "plasmid_name": "pDONR221-SLC9C1_STOP", "sequence-type": "addgene-full", "addgene_id": "161413", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161413.addgene-full.gb" }, @@ -87394,7 +110105,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-miniTurbo-YFP-NLS", "sequence-type": "addgene-full", "addgene_id": "127370", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127370.addgene-full.gb" }, @@ -87403,7 +110117,10 @@ "plasmid_name": "pYPQ166-OsPE2", "sequence-type": "addgene-full", "addgene_id": "141080", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2020.03.010", + "https://www.ncbi.nlm.nih.gov/pubmed/32222487" + ], "kit": null, "file": "data/addgene_plasmids/141080.addgene-full.gb" }, @@ -87412,7 +110129,10 @@ "plasmid_name": "pHAGE-SMAD4-K436N", "sequence-type": "addgene-full", "addgene_id": "116682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116682.addgene-full.gb" }, @@ -87421,7 +110141,10 @@ "plasmid_name": "p35S::SISOBIR1-YFPc", "sequence-type": "addgene-full", "addgene_id": "86164", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "file": "data/addgene_plasmids/86164.addgene-full.gb" }, @@ -87430,7 +110153,10 @@ "plasmid_name": "pHAGE-PTEN-D24G", "sequence-type": "addgene-full", "addgene_id": "116619", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116619.addgene-full.gb" }, @@ -87439,7 +110165,10 @@ "plasmid_name": "pDONR221_SLC46A1", "sequence-type": "addgene-full", "addgene_id": "132191", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132191.addgene-full.gb" }, @@ -87448,7 +110177,10 @@ "plasmid_name": "pENTR221-CMV.Pro", "sequence-type": "addgene-full", "addgene_id": "79486", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79486.addgene-full.gb" }, @@ -87457,7 +110189,10 @@ "plasmid_name": "pDONR223-CAMK2A", "sequence-type": "addgene-full", "addgene_id": "23408", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -87469,7 +110204,10 @@ "plasmid_name": "pWZL Neo Myr Flag STK33", "sequence-type": "addgene-full", "addgene_id": "20641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20641.addgene-full.gb" }, @@ -87478,7 +110216,10 @@ "plasmid_name": "C453-E14: attB4-EF1p>-attB5", "sequence-type": "addgene-full", "addgene_id": "162975", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -87490,7 +110231,10 @@ "plasmid_name": "pEntr_Myc-BirA-G3-ER", "sequence-type": "addgene-full", "addgene_id": "173814", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22599-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33888706" + ], "kit": null, "file": "data/addgene_plasmids/173814.addgene-full.gb" }, @@ -87499,7 +110243,10 @@ "plasmid_name": "pENTR223-BdRF1", "sequence-type": "addgene-full", "addgene_id": "195802", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195802.addgene-full.gb" }, @@ -87508,7 +110255,10 @@ "plasmid_name": "pLX304_miRFP670nano-P2A-ERM-gCam6f", "sequence-type": "addgene-full", "addgene_id": "214927", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.113544", + "https://www.ncbi.nlm.nih.gov/pubmed/38060381" + ], "kit": null, "file": "data/addgene_plasmids/214927.addgene-full.gb" }, @@ -87517,7 +110267,6 @@ "plasmid_name": "pcDNA3.1-ccdB-Firefly", "sequence-type": "addgene-full", "addgene_id": "87066", - "references": [], "kit": null, "file": "data/addgene_plasmids/87066.addgene-full.gb" }, @@ -87526,7 +110275,10 @@ "plasmid_name": "p2R3a-nosT", "sequence-type": "depositor-full", "addgene_id": "71272", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71272.depositor-full.gb" }, @@ -87535,7 +110287,6 @@ "plasmid_name": "Act5C-pDONR221", "sequence-type": "addgene-full", "addgene_id": "124242", - "references": [], "kit": null, "file": "data/addgene_plasmids/124242.addgene-full.gb" }, @@ -87544,7 +110295,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK32B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170609", - "references": [], "kit": null, "file": "data/addgene_plasmids/170609.addgene-full.gb" }, @@ -87553,7 +110303,10 @@ "plasmid_name": "pCR8/GW/TOPO-ELK3", "sequence-type": "addgene-full", "addgene_id": "98622", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98622.addgene-full.gb" }, @@ -87562,7 +110315,10 @@ "plasmid_name": "pDONR223_CDC42_WT", "sequence-type": "addgene-full", "addgene_id": "82104", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82104.addgene-full.gb" }, @@ -87571,7 +110327,6 @@ "plasmid_name": "pENTR L1-13XLexAop2-R5", "sequence-type": "depositor-full", "addgene_id": "41433", - "references": [], "kit": null, "file": "data/addgene_plasmids/41433.depositor-full.gb" }, @@ -87580,7 +110335,10 @@ "plasmid_name": "pLX303", "sequence-type": "addgene-full", "addgene_id": "25897", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "file": "data/addgene_plasmids/25897.addgene-full.gb" }, @@ -87589,7 +110347,10 @@ "plasmid_name": "pENTR4-hDND1", "sequence-type": "depositor-full", "addgene_id": "70070", - "references": [], + "references": [ + "https://doi.org/10.1038/nature21690", + "https://www.ncbi.nlm.nih.gov/pubmed/28297718" + ], "kit": null, "file": "data/addgene_plasmids/70070.depositor-full.gb" }, @@ -87598,7 +110359,10 @@ "plasmid_name": "pDONR221-NIPAL4", "sequence-type": "addgene-full", "addgene_id": "132271", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132271.addgene-full.gb" }, @@ -87607,7 +110371,10 @@ "plasmid_name": "R989-X02-566: His6-MBP-tev-G-Hs.KRAS4b(1-169)", "sequence-type": "addgene-full", "addgene_id": "159539", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159539.addgene-full.gb" }, @@ -87616,7 +110383,10 @@ "plasmid_name": "pDEST26-USP47", "sequence-type": "addgene-full", "addgene_id": "64326", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2011.02.016", + "https://www.ncbi.nlm.nih.gov/pubmed/21362556" + ], "kit": null, "file": "data/addgene_plasmids/64326.addgene-full.gb" }, @@ -87625,7 +110395,6 @@ "plasmid_name": "R777-E275 Hs.RHEB", "sequence-type": "depositor-full", "addgene_id": "70559", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -87637,7 +110406,10 @@ "plasmid_name": "pDONR221_SLC19A3", "sequence-type": "addgene-full", "addgene_id": "132045", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132045.addgene-full.gb" }, @@ -87646,7 +110418,10 @@ "plasmid_name": "pJW4.18", "sequence-type": "depositor-full", "addgene_id": "62873", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62873.depositor-full.gb" }, @@ -87655,7 +110430,6 @@ "plasmid_name": "pDONR221-hspa13", "sequence-type": "addgene-full", "addgene_id": "192730", - "references": [], "kit": null, "file": "data/addgene_plasmids/192730.addgene-full.gb" }, @@ -87664,7 +110438,10 @@ "plasmid_name": "pCellFree_G06", "sequence-type": "depositor-full", "addgene_id": "67140", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "file": "data/addgene_plasmids/67140.depositor-full.gb" }, @@ -87673,7 +110450,10 @@ "plasmid_name": "pRU51", "sequence-type": "addgene-full", "addgene_id": "167677", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167677.addgene-full.gb" }, @@ -87682,7 +110462,10 @@ "plasmid_name": "pDONR223_REG3A_p.G85R", "sequence-type": "addgene-full", "addgene_id": "81299", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -87694,7 +110477,6 @@ "plasmid_name": "IDG_TTYH1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161627", - "references": [], "kit": null, "file": "data/addgene_plasmids/161627.addgene-full.gb" }, @@ -87703,7 +110485,10 @@ "plasmid_name": "pCAG/ATP10D(E215Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209248", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209248.addgene-full.gb" }, @@ -87712,7 +110497,10 @@ "plasmid_name": "pHAGE-MAN2B1", "sequence-type": "addgene-full", "addgene_id": "116756", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116756.addgene-full.gb" }, @@ -87721,7 +110509,10 @@ "plasmid_name": "pLX303-PCDH7-d", "sequence-type": "addgene-full", "addgene_id": "108541", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-1267-T", + "https://www.ncbi.nlm.nih.gov/pubmed/27821484" + ], "kit": null, "file": "data/addgene_plasmids/108541.addgene-full.gb" }, @@ -87730,7 +110521,10 @@ "plasmid_name": "p{3P3-dsRed::KD-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182179", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182179.addgene-full.gb" }, @@ -87739,7 +110533,10 @@ "plasmid_name": "pSLIK TT RBFOX2", "sequence-type": "addgene-full", "addgene_id": "59770", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.235770.113", + "https://www.ncbi.nlm.nih.gov/pubmed/24637117" + ], "kit": null, "file": "data/addgene_plasmids/59770.addgene-full.gb" }, @@ -87748,7 +110545,10 @@ "plasmid_name": "A1-LCD-10G+10S", "sequence-type": "addgene-full", "addgene_id": "178682", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178682.addgene-full.gb" }, @@ -87757,7 +110557,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SYMPK", "sequence-type": "addgene-full", "addgene_id": "222556", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222556.addgene-full.gb" }, @@ -87766,7 +110568,10 @@ "plasmid_name": "p3E-rab5c-CA", "sequence-type": "addgene-full", "addgene_id": "109738", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109738.addgene-full.gb" }, @@ -87775,7 +110580,10 @@ "plasmid_name": "pDONR223_GABRA6_p.G175R", "sequence-type": "addgene-full", "addgene_id": "81428", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -87787,7 +110595,6 @@ "plasmid_name": "pmCell-Free_KA1_SARS-COV-2_S-frag3", "sequence-type": "addgene-full", "addgene_id": "169403", - "references": [], "kit": null, "file": "data/addgene_plasmids/169403.addgene-full.gb" }, @@ -87796,7 +110603,10 @@ "plasmid_name": "LF901: pMAGIC (L1-R5) mU6::SaCas9 gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121811", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121811.addgene-full.gb" }, @@ -87805,7 +110615,10 @@ "plasmid_name": "pDONR221-MPC2_STOP", "sequence-type": "addgene-full", "addgene_id": "161096", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161096.addgene-full.gb" }, @@ -87814,7 +110627,10 @@ "plasmid_name": "TFORF3457", "sequence-type": "addgene-full", "addgene_id": "144933", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144933.addgene-full.gb" }, @@ -87823,7 +110639,10 @@ "plasmid_name": "pHAGE-BRAF-V600L", "sequence-type": "addgene-full", "addgene_id": "116207", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116207.addgene-full.gb" }, @@ -87832,7 +110651,10 @@ "plasmid_name": "pDONR221_SLC10A7", "sequence-type": "addgene-full", "addgene_id": "131872", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131872.addgene-full.gb" }, @@ -87841,7 +110663,10 @@ "plasmid_name": "TFORF3211", "sequence-type": "addgene-full", "addgene_id": "144687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144687.addgene-full.gb" }, @@ -87850,7 +110675,10 @@ "plasmid_name": "TFORF3091", "sequence-type": "addgene-full", "addgene_id": "144567", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144567.addgene-full.gb" }, @@ -87859,7 +110687,9 @@ "plasmid_name": "AAV-hSyn-dSaCas9-NLS-3xHA-3xSunTag_bGHpA", "sequence-type": "addgene-full", "addgene_id": "177345", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-1065603/v1" + ], "kit": null, "file": "data/addgene_plasmids/177345.addgene-full.gb" }, @@ -87868,7 +110698,9 @@ "plasmid_name": "pME-LexA-mODC-LexOP-c-Fos (JDW 1359)", "sequence-type": "addgene-full", "addgene_id": "224506", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224506.addgene-full.gb" }, @@ -87877,7 +110709,10 @@ "plasmid_name": "pDONR221-SLC9A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161376", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161376.addgene-full.gb" }, @@ -87898,7 +110733,10 @@ "plasmid_name": "R619-M63-303: CMV51p> SARS-CoV-2 S(1-1208)-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166010", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/166010.addgene-full.gb" }, @@ -87907,7 +110745,6 @@ "plasmid_name": "R777-E139 Hs.NF1", "sequence-type": "depositor-full", "addgene_id": "70423", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -87919,7 +110756,10 @@ "plasmid_name": "pAG423GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14390", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -87931,7 +110771,10 @@ "plasmid_name": "RY1", "sequence-type": "addgene-full", "addgene_id": "155986", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155986.addgene-full.gb" }, @@ -87940,7 +110783,10 @@ "plasmid_name": "pMuLE ENTR SV40 CreERT2 L3-L2", "sequence-type": "depositor-full", "addgene_id": "62174", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62174.depositor-full.gb" }, @@ -87949,7 +110795,10 @@ "plasmid_name": "TFORF3277", "sequence-type": "addgene-full", "addgene_id": "144753", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144753.addgene-full.gb" }, @@ -87958,7 +110807,10 @@ "plasmid_name": "p3E-rab20", "sequence-type": "addgene-full", "addgene_id": "109677", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109677.addgene-full.gb" }, @@ -87967,7 +110819,10 @@ "plasmid_name": "pDONR223_KEAP1_p.P318L", "sequence-type": "addgene-full", "addgene_id": "81567", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -87979,7 +110834,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_UBA/UIM/ UBM-mut", "sequence-type": "addgene-full", "addgene_id": "187154", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187154.addgene-full.gb" }, @@ -87988,7 +110846,6 @@ "plasmid_name": "pEFS 3-2", "sequence-type": "depositor-full", "addgene_id": "20107", - "references": [], "kit": null, "file": "data/addgene_plasmids/20107.depositor-full.gb" }, @@ -87997,7 +110854,10 @@ "plasmid_name": "pDONR221-Sgd1", "sequence-type": "addgene-full", "addgene_id": "100000", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/100000.addgene-full.gb" }, @@ -88006,7 +110866,10 @@ "plasmid_name": "5'-3xFLAG Sap30bp-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212072", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212072.addgene-full.gb" }, @@ -88015,7 +110878,10 @@ "plasmid_name": "pDONR223_BRAF_p.N581S", "sequence-type": "addgene-full", "addgene_id": "81687", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -88027,7 +110893,10 @@ "plasmid_name": "actc1b-mKate2-rab11bb", "sequence-type": "addgene-full", "addgene_id": "109597", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109597.addgene-full.gb" }, @@ -88036,7 +110905,10 @@ "plasmid_name": "DMGDH", "sequence-type": "addgene-full", "addgene_id": "155549", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155549.addgene-full.gb" }, @@ -88045,7 +110917,10 @@ "plasmid_name": "TFORF2952", "sequence-type": "addgene-full", "addgene_id": "144428", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144428.addgene-full.gb" }, @@ -88054,7 +110929,6 @@ "plasmid_name": "Hs.KRAS4b G12S", "sequence-type": "depositor-full", "addgene_id": "83144", - "references": [], "kit": null, "file": "data/addgene_plasmids/83144.depositor-full.gb" }, @@ -88063,7 +110937,10 @@ "plasmid_name": "pDONR221-SLC35F6_STOP", "sequence-type": "addgene-full", "addgene_id": "161239", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161239.addgene-full.gb" }, @@ -88072,7 +110949,10 @@ "plasmid_name": "TCF7L2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98373", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98373.addgene-full.gb" }, @@ -88081,7 +110961,10 @@ "plasmid_name": "pYPQ-Un1Cas12f1", "sequence-type": "addgene-full", "addgene_id": "205143", - "references": [], + "references": [ + "https://doi.org/10.1002/tpg2.20465", + "https://www.ncbi.nlm.nih.gov/pubmed/38807445" + ], "kit": null, "file": "data/addgene_plasmids/205143.addgene-full.gb" }, @@ -88090,7 +110973,10 @@ "plasmid_name": "pENTR-p38KTRmCerulean3", "sequence-type": "depositor-full", "addgene_id": "59149", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59149.depositor-full.gb" }, @@ -88099,7 +110985,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM S297A", "sequence-type": "addgene-full", "addgene_id": "169983", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169983.addgene-full.gb" }, @@ -88108,7 +110997,10 @@ "plasmid_name": "pLV-EF1A-LivePAR(Y107A)-Hygro", "sequence-type": "addgene-full", "addgene_id": "176073", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109917", + "https://www.ncbi.nlm.nih.gov/pubmed/34731617" + ], "kit": null, "file": "data/addgene_plasmids/176073.addgene-full.gb" }, @@ -88117,7 +111009,10 @@ "plasmid_name": "pDONR223_FGFR3_p.S779R", "sequence-type": "addgene-full", "addgene_id": "82801", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82801.addgene-full.gb" }, @@ -88126,7 +111021,10 @@ "plasmid_name": "pEntry_HCoV-229E-ORF4b", "sequence-type": "depositor-full", "addgene_id": "168964", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168964.depositor-full.gb" }, @@ -88135,7 +111033,9 @@ "plasmid_name": "pLV-tet2puro-gal4DBD-HIFCAD", "sequence-type": "addgene-full", "addgene_id": "207173", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207173.addgene-full.gb" }, @@ -88144,7 +111044,10 @@ "plasmid_name": "pHAGE-ERBB2-R868W", "sequence-type": "addgene-full", "addgene_id": "116348", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116348.addgene-full.gb" }, @@ -88153,7 +111056,6 @@ "plasmid_name": "pENTRY4_Rac5", "sequence-type": "addgene-full", "addgene_id": "126897", - "references": [], "kit": null, "file": "data/addgene_plasmids/126897.addgene-full.gb" }, @@ -88162,7 +111064,10 @@ "plasmid_name": "pVYD", "sequence-type": "depositor-full", "addgene_id": "61302", - "references": [], + "references": [ + "https://doi.org/10.1038/srep06453", + "https://www.ncbi.nlm.nih.gov/pubmed/25262659" + ], "kit": null, "file": "data/addgene_plasmids/61302.depositor-full.gb" }, @@ -88171,7 +111076,6 @@ "plasmid_name": "pCWXPGR-pTF-ERK:MEK", "sequence-type": "addgene-full", "addgene_id": "114291", - "references": [], "kit": null, "file": "data/addgene_plasmids/114291.addgene-full.gb" }, @@ -88180,7 +111084,10 @@ "plasmid_name": "pYPQ284-RVR", "sequence-type": "addgene-full", "addgene_id": "138117", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138117.addgene-full.gb" }, @@ -88189,7 +111096,10 @@ "plasmid_name": "pDONR223_LCE1B_WT", "sequence-type": "addgene-full", "addgene_id": "81841", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -88201,7 +111111,10 @@ "plasmid_name": "pHAGE-BRAF-E648Q", "sequence-type": "addgene-full", "addgene_id": "116141", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116141.addgene-full.gb" }, @@ -88210,7 +111123,6 @@ "plasmid_name": "R777-E305 Hs.SCRIB", "sequence-type": "depositor-full", "addgene_id": "70589", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -88222,7 +111134,10 @@ "plasmid_name": "p3E-rab3c", "sequence-type": "addgene-full", "addgene_id": "109705", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109705.addgene-full.gb" }, @@ -88231,7 +111146,9 @@ "plasmid_name": "pDONR221-DDX3X", "sequence-type": "addgene-full", "addgene_id": "166162", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166162.addgene-full.gb" }, @@ -88240,7 +111157,10 @@ "plasmid_name": "pENTR223-BPLF1_1-1000", "sequence-type": "addgene-full", "addgene_id": "198582", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198582.addgene-full.gb" }, @@ -88249,7 +111169,10 @@ "plasmid_name": "pDEST47-ARL8A-GFP", "sequence-type": "addgene-full", "addgene_id": "67403", - "references": [], + "references": [ + "https://doi.org/10.1080/21592799.2015.1090523", + "https://www.ncbi.nlm.nih.gov/pubmed/27057421" + ], "kit": null, "file": "data/addgene_plasmids/67403.addgene-full.gb" }, @@ -88258,7 +111181,10 @@ "plasmid_name": "JD602: pMVP (L3-L2) APEX2 + WPRE", "sequence-type": "addgene-full", "addgene_id": "121798", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121798.addgene-full.gb" }, @@ -88267,7 +111193,10 @@ "plasmid_name": "pDONR223_WIPI1_p.P139S", "sequence-type": "addgene-full", "addgene_id": "81415", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -88279,7 +111208,10 @@ "plasmid_name": "pEPYCeGM0022", "sequence-type": "addgene-full", "addgene_id": "196147", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196147.addgene-full.gb" }, @@ -88288,7 +111220,10 @@ "plasmid_name": "pENTR D-TOPO-C3_8", "sequence-type": "depositor-full", "addgene_id": "60257", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60257.depositor-full.gb" }, @@ -88297,7 +111232,10 @@ "plasmid_name": "pDONR223_DARC_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82973", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82973.addgene-full.gb" }, @@ -88306,7 +111244,10 @@ "plasmid_name": "MAC3-EGFR", "sequence-type": "addgene-full", "addgene_id": "222610", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "file": "data/addgene_plasmids/222610.addgene-full.gb" }, @@ -88315,7 +111256,10 @@ "plasmid_name": "IH101: pMVP (L5-L4) OLLAS epitope tag", "sequence-type": "addgene-full", "addgene_id": "121703", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121703.addgene-full.gb" }, @@ -88324,7 +111268,10 @@ "plasmid_name": "AAEL007405 SP R", "sequence-type": "addgene-full", "addgene_id": "115393", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115393.addgene-full.gb" }, @@ -88333,7 +111280,9 @@ "plasmid_name": "pDONR221-TXNL1(v1)", "sequence-type": "addgene-full", "addgene_id": "166219", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166219.addgene-full.gb" }, @@ -88342,7 +111291,9 @@ "plasmid_name": "pDONR221 FLAG-APEX2-P4C-IRES-mNeonGreen", "sequence-type": "addgene-full", "addgene_id": "218645", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218645.addgene-full.gb" }, @@ -88351,7 +111302,10 @@ "plasmid_name": "pEAHISMRSA2676", "sequence-type": "addgene-full", "addgene_id": "96970", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/96970.addgene-full.gb" }, @@ -88360,7 +111314,10 @@ "plasmid_name": "pMMK ENTR 3 polH aeBlue polH VSV-G", "sequence-type": "addgene-full", "addgene_id": "206278", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206278.addgene-full.gb" }, @@ -88369,7 +111326,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-mCBP80", "sequence-type": "addgene-full", "addgene_id": "192313", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192313.addgene-full.gb" }, @@ -88378,7 +111338,10 @@ "plasmid_name": "pENTR-ZmIAA12", "sequence-type": "addgene-full", "addgene_id": "188435", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188435.addgene-full.gb" }, @@ -88387,7 +111350,9 @@ "plasmid_name": "pMpGWB222", "sequence-type": "depositor-full", "addgene_id": "68613", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68613.depositor-full.gb" }, @@ -88396,7 +111361,10 @@ "plasmid_name": "pAG425GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14274", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -88408,7 +111376,10 @@ "plasmid_name": "E228Q Vps4A-HA", "sequence-type": "addgene-full", "addgene_id": "200087", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2023.106150", + "https://www.ncbi.nlm.nih.gov/pubmed/36890792" + ], "kit": null, "file": "data/addgene_plasmids/200087.addgene-full.gb" }, @@ -88417,7 +111388,10 @@ "plasmid_name": "pCZGY2139", "sequence-type": "depositor-full", "addgene_id": "74111", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/74111.depositor-full.gb" }, @@ -88426,7 +111400,10 @@ "plasmid_name": "pLenti CRISPR V2 sgMTHFD1L_1", "sequence-type": "addgene-full", "addgene_id": "106316", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106316.addgene-full.gb" }, @@ -88435,7 +111412,10 @@ "plasmid_name": "pMuLE ENTR CMV L1-R5", "sequence-type": "depositor-full", "addgene_id": "62090", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62090.depositor-full.gb" }, @@ -88444,7 +111424,10 @@ "plasmid_name": "pCFJ108 - pENTR221 - [cbr-unc-119(+)]", "sequence-type": "addgene-full", "addgene_id": "200367", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000870", + "https://www.ncbi.nlm.nih.gov/pubmed/37426742" + ], "kit": null, "file": "data/addgene_plasmids/200367.addgene-full.gb" }, @@ -88453,7 +111436,10 @@ "plasmid_name": "pDONR221-SLC44A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161392", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161392.depositor-full.gb" }, @@ -88462,7 +111448,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP12", "sequence-type": "addgene-full", "addgene_id": "158363", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158363.addgene-full.gb" }, @@ -88471,7 +111460,10 @@ "plasmid_name": "actc1b-mKate2-CDC42", "sequence-type": "addgene-full", "addgene_id": "109531", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109531.addgene-full.gb" }, @@ -88480,7 +111472,10 @@ "plasmid_name": "TFORF2939", "sequence-type": "addgene-full", "addgene_id": "144415", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144415.addgene-full.gb" }, @@ -88489,7 +111484,10 @@ "plasmid_name": "pDONR223_KEAP1_p.R470H", "sequence-type": "addgene-full", "addgene_id": "81621", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -88501,7 +111499,10 @@ "plasmid_name": "pDONR221-SLC25A13_STOP", "sequence-type": "addgene-full", "addgene_id": "161204", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161204.addgene-full.gb" }, @@ -88510,7 +111511,9 @@ "plasmid_name": "p5E-EFS (EF1a core) (JDW 1319)", "sequence-type": "addgene-full", "addgene_id": "224474", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224474.addgene-full.gb" }, @@ -88519,7 +111522,10 @@ "plasmid_name": "pDONR223_SMAD4_p.D493N", "sequence-type": "addgene-full", "addgene_id": "82788", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82788.addgene-full.gb" }, @@ -88528,7 +111534,10 @@ "plasmid_name": "pEBTetDBl-CLIP-CP110", "sequence-type": "addgene-full", "addgene_id": "136852", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136852.addgene-full.gb" }, @@ -88537,7 +111546,10 @@ "plasmid_name": "pIK208", "sequence-type": "depositor-full", "addgene_id": "65630", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.115.019273", + "https://www.ncbi.nlm.nih.gov/pubmed/26044730" + ], "kit": null, "file": "data/addgene_plasmids/65630.depositor-full.gb" }, @@ -88546,7 +111558,10 @@ "plasmid_name": "FLAG-PPP2R5E siRNA-resistant", "sequence-type": "addgene-full", "addgene_id": "120861", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.201608", + "https://www.ncbi.nlm.nih.gov/pubmed/28404789" + ], "kit": null, "file": "data/addgene_plasmids/120861.addgene-full.gb" }, @@ -88555,7 +111570,10 @@ "plasmid_name": "pDONR221_SLC17A2", "sequence-type": "addgene-full", "addgene_id": "131900", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131900.addgene-full.gb" }, @@ -88564,7 +111582,10 @@ "plasmid_name": "pHAGE-EZH2-N322S", "sequence-type": "addgene-full", "addgene_id": "116375", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116375.addgene-full.gb" }, @@ -88573,7 +111594,10 @@ "plasmid_name": "TFORF3365", "sequence-type": "addgene-full", "addgene_id": "144841", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144841.addgene-full.gb" }, @@ -88582,7 +111606,10 @@ "plasmid_name": "pMP71-HLA-B0702-His", "sequence-type": "addgene-full", "addgene_id": "104850", - "references": [], + "references": [ + "https://doi.org/10.4049/immunohorizons.1800029", + "https://www.ncbi.nlm.nih.gov/pubmed/31022685" + ], "kit": null, "file": "data/addgene_plasmids/104850.addgene-full.gb" }, @@ -88591,7 +111618,10 @@ "plasmid_name": "pTW083", "sequence-type": "addgene-full", "addgene_id": "115931", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115931.addgene-full.gb" }, @@ -88600,7 +111630,10 @@ "plasmid_name": "pMx/ATP10A-HA", "sequence-type": "addgene-full", "addgene_id": "209232", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209232.addgene-full.gb" }, @@ -88609,7 +111642,10 @@ "plasmid_name": "pLKO.DEST.hygro", "sequence-type": "depositor-full", "addgene_id": "32685", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "file": "data/addgene_plasmids/32685.depositor-full.gb" }, @@ -88618,7 +111654,6 @@ "plasmid_name": "pSMPUW_8.2_M3_CAMKIIA-gateway-V5-SV40", "sequence-type": "addgene-full", "addgene_id": "128462", - "references": [], "kit": null, "file": "data/addgene_plasmids/128462.addgene-full.gb" }, @@ -88627,7 +111662,10 @@ "plasmid_name": "pCM3.19", "sequence-type": "depositor-full", "addgene_id": "19401", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19401.depositor-full.gb" }, @@ -88636,7 +111674,10 @@ "plasmid_name": "pDONR223_FTH1_p.A161T", "sequence-type": "addgene-full", "addgene_id": "81278", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -88648,7 +111689,10 @@ "plasmid_name": "pAG415GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14145", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -88660,7 +111704,6 @@ "plasmid_name": "pENTR hH1-ARRET", "sequence-type": "depositor-full", "addgene_id": "111382", - "references": [], "kit": null, "file": "data/addgene_plasmids/111382.depositor-full.gb" }, @@ -88669,7 +111712,10 @@ "plasmid_name": "pQCXIN- myc ULK1 wt", "sequence-type": "addgene-full", "addgene_id": "27626", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1196371", + "https://www.ncbi.nlm.nih.gov/pubmed/21205641" + ], "kit": null, "file": "data/addgene_plasmids/27626.addgene-full.gb" }, @@ -88678,7 +111724,10 @@ "plasmid_name": "pGWT35S-KON206-MXMT", "sequence-type": "addgene-full", "addgene_id": "182729", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182729.addgene-full.gb" }, @@ -88687,7 +111736,10 @@ "plasmid_name": "pJJiaDEST-APEX2-GAL9", "sequence-type": "addgene-full", "addgene_id": "149520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.009", + "https://www.ncbi.nlm.nih.gov/pubmed/29625033" + ], "kit": null, "file": "data/addgene_plasmids/149520.addgene-full.gb" }, @@ -88696,7 +111748,6 @@ "plasmid_name": "pDONR221-TMPRSS2", "sequence-type": "addgene-full", "addgene_id": "158441", - "references": [], "kit": null, "file": "data/addgene_plasmids/158441.addgene-full.gb" }, @@ -88705,7 +111756,10 @@ "plasmid_name": "pBullet-pm-c", "sequence-type": "depositor-full", "addgene_id": "53078", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53078.depositor-full.gb" }, @@ -88714,7 +111768,10 @@ "plasmid_name": "THOC5", "sequence-type": "addgene-full", "addgene_id": "156084", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156084.addgene-full.gb" }, @@ -88723,7 +111780,10 @@ "plasmid_name": "PB-TAC-OKMS", "sequence-type": "depositor-full", "addgene_id": "80480", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "file": "data/addgene_plasmids/80480.depositor-full.gb" }, @@ -88732,7 +111792,10 @@ "plasmid_name": "pCPP5951", "sequence-type": "addgene-full", "addgene_id": "128719", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000388", + "https://www.ncbi.nlm.nih.gov/pubmed/19381254" + ], "kit": null, "file": "data/addgene_plasmids/128719.addgene-full.gb" }, @@ -88741,7 +111804,10 @@ "plasmid_name": "2Flag-pDEST-C", "sequence-type": "addgene-full", "addgene_id": "118372", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118372.addgene-full.gb" }, @@ -88750,7 +111816,10 @@ "plasmid_name": "pHAGE-WDR12", "sequence-type": "addgene-full", "addgene_id": "116803", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116803.addgene-full.gb" }, @@ -88759,7 +111828,10 @@ "plasmid_name": "pYPQ292-D977A", "sequence-type": "addgene-full", "addgene_id": "129680", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129680.addgene-full.gb" }, @@ -88768,7 +111840,10 @@ "plasmid_name": "R989-X11-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) G13D", "sequence-type": "addgene-full", "addgene_id": "159543", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159543.addgene-full.gb" }, @@ -88777,7 +111852,9 @@ "plasmid_name": "pFLIP34", "sequence-type": "depositor-full", "addgene_id": "65501", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65501.depositor-full.gb" }, @@ -88786,7 +111863,10 @@ "plasmid_name": "HS-Utrophin-GFP", "sequence-type": "addgene-full", "addgene_id": "105952", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25600237" + ], "kit": null, "file": "data/addgene_plasmids/105952.addgene-full.gb" }, @@ -88795,7 +111875,10 @@ "plasmid_name": "pH7m34GW-35S:SNACS S785A", "sequence-type": "addgene-full", "addgene_id": "203577", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.56351", + "https://www.ncbi.nlm.nih.gov/pubmed/32463362" + ], "kit": null, "file": "data/addgene_plasmids/203577.addgene-full.gb" }, @@ -88804,7 +111887,10 @@ "plasmid_name": "pDONR221 NLRP1 T755N", "sequence-type": "addgene-full", "addgene_id": "166820", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166820.addgene-full.gb" }, @@ -88813,7 +111899,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP1", "sequence-type": "addgene-full", "addgene_id": "141255", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141255.addgene-full.gb" }, @@ -88822,7 +111911,10 @@ "plasmid_name": "pHAGE-PIK3CA-C420R", "sequence-type": "addgene-full", "addgene_id": "116457", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116457.addgene-full.gb" }, @@ -88831,7 +111923,10 @@ "plasmid_name": "pGM32DEST", "sequence-type": "depositor-full", "addgene_id": "74747", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301705", + "https://www.ncbi.nlm.nih.gov/pubmed/30504365" + ], "kit": null, "file": "data/addgene_plasmids/74747.depositor-full.gb" }, @@ -88840,7 +111935,6 @@ "plasmid_name": "R777-E107 Hs.INSRR", "sequence-type": "depositor-full", "addgene_id": "70391", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -88852,7 +111946,10 @@ "plasmid_name": "pDarmo.CMVT_v1", "sequence-type": "addgene-full", "addgene_id": "133072", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aay0166", + "https://www.ncbi.nlm.nih.gov/pubmed/31601708" + ], "kit": null, "file": "data/addgene_plasmids/133072.addgene-full.gb" }, @@ -88861,7 +111958,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MKNK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170593", - "references": [], "kit": null, "file": "data/addgene_plasmids/170593.addgene-full.gb" }, @@ -88870,7 +111966,10 @@ "plasmid_name": "pDESTmycDICER", "sequence-type": "addgene-full", "addgene_id": "19873", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19873.addgene-full.gb" }, @@ -88879,7 +111978,6 @@ "plasmid_name": "pME-QF2", "sequence-type": "addgene-full", "addgene_id": "83307", - "references": [], "kit": null, "file": "data/addgene_plasmids/83307.addgene-full.gb" }, @@ -88888,7 +111986,10 @@ "plasmid_name": "pENTR-R2L4", "sequence-type": "addgene-full", "addgene_id": "141061", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141061.addgene-full.gb" }, @@ -88897,7 +111998,10 @@ "plasmid_name": "pHAGE-PIK3CG-S806F", "sequence-type": "addgene-full", "addgene_id": "116583", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116583.addgene-full.gb" }, @@ -88906,7 +112010,10 @@ "plasmid_name": "pGWT35S-RBCS1a(1\u201379)-TagRFP", "sequence-type": "addgene-full", "addgene_id": "182586", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "file": "data/addgene_plasmids/182586.addgene-full.gb" }, @@ -88915,7 +112022,10 @@ "plasmid_name": "pPWCh", "sequence-type": "addgene-full", "addgene_id": "124238", - "references": [], + "references": [ + "https://doi.org/10.1002/cbin.10607", + "https://www.ncbi.nlm.nih.gov/pubmed/27006187" + ], "kit": null, "file": "data/addgene_plasmids/124238.addgene-full.gb" }, @@ -88924,7 +112034,10 @@ "plasmid_name": "pDONR223_MAGEC2_p.S85I", "sequence-type": "addgene-full", "addgene_id": "81337", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -88936,7 +112049,10 @@ "plasmid_name": "JAM2_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176997", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176997.addgene-full.gb" }, @@ -88945,7 +112061,10 @@ "plasmid_name": "pCFJ2442 - [1-2] ENTR - Fluor - ce-tagRFP-T(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159858", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159858.addgene-full.gb" }, @@ -88954,7 +112073,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP14", "sequence-type": "addgene-full", "addgene_id": "169387", - "references": [], "kit": null, "file": "data/addgene_plasmids/169387.addgene-full.gb" }, @@ -88963,7 +112081,10 @@ "plasmid_name": "pMuLE ENTR U6 n.s shRNA L5-L4", "sequence-type": "addgene-full", "addgene_id": "62138", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62138.addgene-full.gb" }, @@ -88972,7 +112093,6 @@ "plasmid_name": "R777-E161 Hs.PEBP1", "sequence-type": "depositor-full", "addgene_id": "70445", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -88984,7 +112104,10 @@ "plasmid_name": "pHAGE-PIK3CA-N345T", "sequence-type": "addgene-full", "addgene_id": "116518", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116518.addgene-full.gb" }, @@ -88993,7 +112116,10 @@ "plasmid_name": "pMuLE ENTR U6 L1-L4", "sequence-type": "depositor-full", "addgene_id": "62112", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62112.depositor-full.gb" }, @@ -89002,7 +112128,10 @@ "plasmid_name": "pDONR221-LETM1", "sequence-type": "addgene-full", "addgene_id": "132290", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132290.addgene-full.gb" }, @@ -89011,7 +112140,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(L301R/V306R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128656", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128656.addgene-full.gb" }, @@ -89020,7 +112152,10 @@ "plasmid_name": "pDONR221_SLC5A4", "sequence-type": "addgene-full", "addgene_id": "132170", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132170.addgene-full.gb" }, @@ -89029,7 +112164,10 @@ "plasmid_name": "pCMB-MITr", "sequence-type": "depositor-full", "addgene_id": "61199", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61199.depositor-full.gb" }, @@ -89038,7 +112176,10 @@ "plasmid_name": "pDONR221-NPC1L1_STOP", "sequence-type": "addgene-full", "addgene_id": "161469", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161469.addgene-full.gb" }, @@ -89047,7 +112188,10 @@ "plasmid_name": "Flag-HA-USP15", "sequence-type": "addgene-full", "addgene_id": "22570", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22570.addgene-full.gb" }, @@ -89056,7 +112200,10 @@ "plasmid_name": "pLX304_C12orf49-V5", "sequence-type": "addgene-full", "addgene_id": "155110", - "references": [], + "references": [ + "https://doi.org/10.1038/s42255-020-0211-z", + "https://www.ncbi.nlm.nih.gov/pubmed/32694731" + ], "kit": null, "file": "data/addgene_plasmids/155110.addgene-full.gb" }, @@ -89065,7 +112212,6 @@ "plasmid_name": "pcDNA-SUN1 mApple", "sequence-type": "addgene-full", "addgene_id": "187676", - "references": [], "kit": null, "file": "data/addgene_plasmids/187676.addgene-full.gb" }, @@ -89074,7 +112220,10 @@ "plasmid_name": "pINDUCER-21-RUNX1-P2A-ERG-IMPROVED", "sequence-type": "addgene-full", "addgene_id": "154089", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "file": "data/addgene_plasmids/154089.addgene-full.gb" }, @@ -89083,7 +112232,10 @@ "plasmid_name": "tetO-SMARCD3", "sequence-type": "addgene-full", "addgene_id": "170701", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170701.addgene-full.gb" }, @@ -89092,7 +112244,10 @@ "plasmid_name": "PB-TA-ERP2-hcGAS(wt)", "sequence-type": "addgene-full", "addgene_id": "208396", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06889-6", + "https://www.ncbi.nlm.nih.gov/pubmed/38200309" + ], "kit": null, "file": "data/addgene_plasmids/208396.addgene-full.gb" }, @@ -89101,7 +112256,10 @@ "plasmid_name": "pFRT_TO_FlagHA_USP10_C424A", "sequence-type": "addgene-full", "addgene_id": "127103", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.12.024", + "https://www.ncbi.nlm.nih.gov/pubmed/31981475" + ], "kit": null, "file": "data/addgene_plasmids/127103.addgene-full.gb" }, @@ -89110,7 +112268,6 @@ "plasmid_name": "IDG_CACNB1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161660", - "references": [], "kit": null, "file": "data/addgene_plasmids/161660.addgene-full.gb" }, @@ -89119,7 +112276,10 @@ "plasmid_name": "pLX307 P2A GFP YAP1", "sequence-type": "addgene-full", "addgene_id": "193675", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193675.addgene-full.gb" }, @@ -89128,7 +112288,10 @@ "plasmid_name": "pYPQ292 (AaCas12b)-D570A-TV-MS2-VPR", "sequence-type": "addgene-full", "addgene_id": "136382", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136382.addgene-full.gb" }, @@ -89137,7 +112300,10 @@ "plasmid_name": "PE_14: Prhl_lac_tet_bD", "sequence-type": "addgene-full", "addgene_id": "113593", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113593.addgene-full.gb" }, @@ -89146,7 +112312,9 @@ "plasmid_name": "pFLIP43", "sequence-type": "depositor-full", "addgene_id": "65618", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65618.depositor-full.gb" }, @@ -89155,7 +112323,10 @@ "plasmid_name": "pDONR223-PRKD1", "sequence-type": "addgene-full", "addgene_id": "23500", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -89167,7 +112338,10 @@ "plasmid_name": "pDONR221_SLC35B1", "sequence-type": "addgene-full", "addgene_id": "132099", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132099.addgene-full.gb" }, @@ -89176,7 +112350,10 @@ "plasmid_name": "pHAGE-AKT3", "sequence-type": "addgene-full", "addgene_id": "116711", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116711.addgene-full.gb" }, @@ -89185,7 +112362,10 @@ "plasmid_name": "SMN1-1", "sequence-type": "addgene-full", "addgene_id": "156022", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156022.addgene-full.gb" }, @@ -89194,7 +112374,10 @@ "plasmid_name": "pDONR221_SLC24A5", "sequence-type": "addgene-full", "addgene_id": "132002", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132002.addgene-full.gb" }, @@ -89203,7 +112386,10 @@ "plasmid_name": "pCPP3417", "sequence-type": "addgene-full", "addgene_id": "128724", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128724.addgene-full.gb" }, @@ -89212,7 +112398,10 @@ "plasmid_name": "pcDNA4/TO/GFP-GIGYF1", "sequence-type": "addgene-full", "addgene_id": "141188", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.03.006", + "https://www.ncbi.nlm.nih.gov/pubmed/30917308" + ], "kit": null, "file": "data/addgene_plasmids/141188.addgene-full.gb" }, @@ -89221,7 +112410,10 @@ "plasmid_name": "EGFP-Hu_Plk5(WT)", "sequence-type": "addgene-full", "addgene_id": "136319", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.00607-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21245385" + ], "kit": null, "file": "data/addgene_plasmids/136319.addgene-full.gb" }, @@ -89230,7 +112422,10 @@ "plasmid_name": "FU-tetO-Gateway", "sequence-type": "addgene-full", "addgene_id": "43914", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0028719", + "https://www.ncbi.nlm.nih.gov/pubmed/22174877" + ], "kit": null, "file": "data/addgene_plasmids/43914.addgene-full.gb" }, @@ -89239,7 +112434,10 @@ "plasmid_name": "pAG423GPD-EYFP-ccdB", "sequence-type": "addgene-full", "addgene_id": "14342", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -89251,7 +112449,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP15", "sequence-type": "addgene-full", "addgene_id": "141268", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141268.addgene-full.gb" }, @@ -89260,7 +112461,10 @@ "plasmid_name": "pDL17", "sequence-type": "addgene-full", "addgene_id": "175898", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175898.addgene-full.gb" }, @@ -89269,7 +112473,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS4B", "sequence-type": "addgene-full", "addgene_id": "145347", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145347.addgene-full.gb" }, @@ -89278,7 +112485,10 @@ "plasmid_name": "C417-E01: attB4-polyhedrinp>His6-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162932", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -89290,7 +112500,10 @@ "plasmid_name": "pPB-cT3G-cERP2-MAFF", "sequence-type": "addgene-full", "addgene_id": "192917", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192917.addgene-full.gb" }, @@ -89299,7 +112512,6 @@ "plasmid_name": "p41Nat 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58553", - "references": [], "kit": null, "file": "data/addgene_plasmids/58553.depositor-full.gb" }, @@ -89308,7 +112520,10 @@ "plasmid_name": "pDONR221_SLCO4A1", "sequence-type": "addgene-full", "addgene_id": "132236", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132236.addgene-full.gb" }, @@ -89317,7 +112532,10 @@ "plasmid_name": "pJRA107", "sequence-type": "addgene-full", "addgene_id": "209340", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209340.addgene-full.gb" }, @@ -89326,7 +112544,10 @@ "plasmid_name": "pDONR223_MAP3K2_WT", "sequence-type": "addgene-full", "addgene_id": "82143", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82143.addgene-full.gb" }, @@ -89335,7 +112556,10 @@ "plasmid_name": "MAC_N_NFIC", "sequence-type": "addgene-full", "addgene_id": "187739", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187739.addgene-full.gb" }, @@ -89344,7 +112568,10 @@ "plasmid_name": "pSB-CMV-MCS-Puro cPLA2-mK2-P2A-EGFP-LaminB1", "sequence-type": "addgene-full", "addgene_id": "162566", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.04.016", + "https://www.ncbi.nlm.nih.gov/pubmed/27203112" + ], "kit": null, "file": "data/addgene_plasmids/162566.addgene-full.gb" }, @@ -89353,7 +112580,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-mir-240", "sequence-type": "depositor-full", "addgene_id": "46742", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46742.depositor-full.gb" }, @@ -89362,7 +112592,10 @@ "plasmid_name": "pAG306GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14212", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -89374,7 +112607,10 @@ "plasmid_name": "pDONR223_SGK1_p.F27L", "sequence-type": "addgene-full", "addgene_id": "81391", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -89386,7 +112622,6 @@ "plasmid_name": "pcDNA3-hFCER1G-VenusFlag", "sequence-type": "addgene-full", "addgene_id": "211899", - "references": [], "kit": null, "file": "data/addgene_plasmids/211899.addgene-full.gb" }, @@ -89395,7 +112630,10 @@ "plasmid_name": "pCFJ2301 - [1-2] ENTR - Fluor - ce-mMaple3(1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159865", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159865.addgene-full.gb" }, @@ -89404,7 +112642,10 @@ "plasmid_name": "pHAGE-PIK3CA-P539R", "sequence-type": "addgene-full", "addgene_id": "116525", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116525.addgene-full.gb" }, @@ -89413,7 +112654,6 @@ "plasmid_name": "pEF 1-PFF-4", "sequence-type": "depositor-full", "addgene_id": "20085", - "references": [], "kit": null, "file": "data/addgene_plasmids/20085.depositor-full.gb" }, @@ -89422,7 +112662,10 @@ "plasmid_name": "pLD-puro-Cc-TARDBP-WT_VA", "sequence-type": "addgene-full", "addgene_id": "141327", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "file": "data/addgene_plasmids/141327.addgene-full.gb" }, @@ -89431,7 +112674,9 @@ "plasmid_name": "pMpGWB410", "sequence-type": "depositor-full", "addgene_id": "68675", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68675.depositor-full.gb" }, @@ -89440,7 +112685,10 @@ "plasmid_name": "pcDNA3.1 GW-NL-myc", "sequence-type": "addgene-full", "addgene_id": "113447", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113447.addgene-full.gb" }, @@ -89449,7 +112697,10 @@ "plasmid_name": "pDONR221-SLC4A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161454", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161454.addgene-full.gb" }, @@ -89458,7 +112709,10 @@ "plasmid_name": "pSws1-nfsB-CFP", "sequence-type": "depositor-full", "addgene_id": "86375", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms10590", + "https://www.ncbi.nlm.nih.gov/pubmed/26838932" + ], "kit": null, "file": "data/addgene_plasmids/86375.depositor-full.gb" }, @@ -89467,7 +112721,10 @@ "plasmid_name": "pDONR223_TNFAIP3_WT", "sequence-type": "addgene-full", "addgene_id": "82238", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82238.addgene-full.gb" }, @@ -89476,7 +112733,10 @@ "plasmid_name": "FAS_pLX307", "sequence-type": "addgene-full", "addgene_id": "98334", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98334.addgene-full.gb" }, @@ -89485,7 +112745,10 @@ "plasmid_name": "MAC-GPR78", "sequence-type": "addgene-full", "addgene_id": "158382", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158382.addgene-full.gb" }, @@ -89494,7 +112757,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-133a-1", "sequence-type": "depositor-full", "addgene_id": "46676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46676.depositor-full.gb" }, @@ -89503,7 +112769,6 @@ "plasmid_name": "pFRT-TODestGFP_HuC", "sequence-type": "depositor-full", "addgene_id": "65762", - "references": [], "kit": null, "file": "data/addgene_plasmids/65762.depositor-full.gb" }, @@ -89512,7 +112777,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.L699M", "sequence-type": "addgene-full", "addgene_id": "82846", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82846.addgene-full.gb" }, @@ -89521,7 +112789,10 @@ "plasmid_name": "cavin-3-HA", "sequence-type": "depositor-full", "addgene_id": "27711", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1600-0854.2009.01023.x", + "https://www.ncbi.nlm.nih.gov/pubmed/20070607" + ], "kit": null, "file": "data/addgene_plasmids/27711.depositor-full.gb" }, @@ -89530,7 +112801,10 @@ "plasmid_name": "pME-NR2F2", "sequence-type": "addgene-full", "addgene_id": "138359", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138359.addgene-full.gb" }, @@ -89539,7 +112813,10 @@ "plasmid_name": "pEBTet-SNAP-ALMS1", "sequence-type": "addgene-full", "addgene_id": "136828", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136828.addgene-full.gb" }, @@ -89548,7 +112825,10 @@ "plasmid_name": "pLX401-INK4A", "sequence-type": "addgene-full", "addgene_id": "121919", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-18-3066", + "https://www.ncbi.nlm.nih.gov/pubmed/30755442" + ], "kit": null, "file": "data/addgene_plasmids/121919.addgene-full.gb" }, @@ -89557,7 +112837,10 @@ "plasmid_name": "pDONR221-SLC16A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161105", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161105.addgene-full.gb" }, @@ -89566,7 +112849,10 @@ "plasmid_name": "pDONR223_SMAD4_p.P356R", "sequence-type": "addgene-full", "addgene_id": "82769", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82769.addgene-full.gb" }, @@ -89575,7 +112861,10 @@ "plasmid_name": "pDONR223_NFE2L2_p.G31R", "sequence-type": "addgene-full", "addgene_id": "81520", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -89587,7 +112876,10 @@ "plasmid_name": "pHPdestmCherry", "sequence-type": "depositor-full", "addgene_id": "24567", - "references": [], + "references": [ + "https://doi.org/10.1002/dvg.20637", + "https://www.ncbi.nlm.nih.gov/pubmed/20506180" + ], "kit": null, "file": "data/addgene_plasmids/24567.depositor-full.gb" }, @@ -89596,7 +112888,10 @@ "plasmid_name": "TFORF3238", "sequence-type": "addgene-full", "addgene_id": "144714", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144714.addgene-full.gb" }, @@ -89605,7 +112900,6 @@ "plasmid_name": "R777-E211 Hs.RAC3", "sequence-type": "depositor-full", "addgene_id": "70495", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -89617,7 +112911,10 @@ "plasmid_name": "pHAGE-FLT1-G886V", "sequence-type": "addgene-full", "addgene_id": "116394", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116394.addgene-full.gb" }, @@ -89626,7 +112923,10 @@ "plasmid_name": "pAG303GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14326", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -89638,7 +112938,6 @@ "plasmid_name": "pAM-35s-CBL5-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102397", - "references": [], "kit": null, "file": "data/addgene_plasmids/102397.addgene-full.gb" }, @@ -89647,7 +112946,10 @@ "plasmid_name": "pENTR1A DHFR.cHSF1", "sequence-type": "addgene-full", "addgene_id": "134737", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.28652", + "https://www.ncbi.nlm.nih.gov/pubmed/28949290" + ], "kit": null, "file": "data/addgene_plasmids/134737.addgene-full.gb" }, @@ -89656,7 +112958,10 @@ "plasmid_name": "TFORF3537", "sequence-type": "depositor-full", "addgene_id": "145013", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145013.depositor-full.gb" }, @@ -89665,7 +112970,10 @@ "plasmid_name": "pDONR223_DNAJC12_WT", "sequence-type": "addgene-full", "addgene_id": "81974", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -89677,7 +112985,10 @@ "plasmid_name": "pDONR 221-XERICO (STOP)", "sequence-type": "addgene-full", "addgene_id": "118685", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118685.addgene-full.gb" }, @@ -89686,7 +112997,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP4_stop", "sequence-type": "addgene-full", "addgene_id": "168546", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168546.addgene-full.gb" }, @@ -89695,7 +113009,10 @@ "plasmid_name": "TFORF3498", "sequence-type": "addgene-full", "addgene_id": "144974", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144974.addgene-full.gb" }, @@ -89704,7 +113021,9 @@ "plasmid_name": "pDONR221-MAGI2(v2)", "sequence-type": "addgene-full", "addgene_id": "166183", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166183.addgene-full.gb" }, @@ -89713,7 +113032,10 @@ "plasmid_name": "pHAGE-EGFR-E709A", "sequence-type": "addgene-full", "addgene_id": "116240", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116240.addgene-full.gb" }, @@ -89722,7 +113044,6 @@ "plasmid_name": "R777-E342 Hs.TBK1-nostop", "sequence-type": "depositor-full", "addgene_id": "70626", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -89734,7 +113055,10 @@ "plasmid_name": "pDONR223_ARAF_p.D429A", "sequence-type": "addgene-full", "addgene_id": "82909", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82909.addgene-full.gb" }, @@ -89743,7 +113067,10 @@ "plasmid_name": "pAG416GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14195", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -89755,7 +113082,6 @@ "plasmid_name": "pENTR-ABCC1_STOP", "sequence-type": "addgene-full", "addgene_id": "221423", - "references": [], "kit": null, "file": "data/addgene_plasmids/221423.addgene-full.gb" }, @@ -89764,7 +113090,10 @@ "plasmid_name": "KZ301: pMVP (L3-L2) P2A-Blast + polyA", "sequence-type": "addgene-full", "addgene_id": "121779", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121779.addgene-full.gb" }, @@ -89773,7 +113102,10 @@ "plasmid_name": "pCFJ420 - Peft-3::GFP::H2B (ubiquitous)", "sequence-type": "depositor-full", "addgene_id": "34877", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34877.depositor-full.gb" }, @@ -89782,7 +113114,10 @@ "plasmid_name": "pDONR223_ERBB2_p.R897Q", "sequence-type": "addgene-full", "addgene_id": "81714", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -89794,7 +113129,10 @@ "plasmid_name": "pSLIK_Zeo_3xflag_Luciferase", "sequence-type": "addgene-full", "addgene_id": "136533", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136533.addgene-full.gb" }, @@ -89803,7 +113141,10 @@ "plasmid_name": "pDONR221-SLC39A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161331", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161331.addgene-full.gb" }, @@ -89812,7 +113153,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp1", "sequence-type": "addgene-full", "addgene_id": "168912", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168912.addgene-full.gb" }, @@ -89821,7 +113165,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST NET1A V5 WT", "sequence-type": "depositor-full", "addgene_id": "69817", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "file": "data/addgene_plasmids/69817.depositor-full.gb" }, @@ -89830,7 +113177,10 @@ "plasmid_name": "pENTR-L4-pTF-L1R", "sequence-type": "depositor-full", "addgene_id": "45954", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "file": "data/addgene_plasmids/45954.depositor-full.gb" }, @@ -89839,7 +113189,10 @@ "plasmid_name": "TFORF3044", "sequence-type": "addgene-full", "addgene_id": "144520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144520.addgene-full.gb" }, @@ -89848,7 +113201,10 @@ "plasmid_name": "CCNL2", "sequence-type": "addgene-full", "addgene_id": "155441", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155441.addgene-full.gb" }, @@ -89857,7 +113213,10 @@ "plasmid_name": "pAM99", "sequence-type": "addgene-full", "addgene_id": "226691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226691.addgene-full.gb" }, @@ -89866,7 +113225,10 @@ "plasmid_name": "LOC5567066 Gastrin-releasing peptide receptor", "sequence-type": "addgene-full", "addgene_id": "115372", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115372.addgene-full.gb" }, @@ -89875,7 +113237,10 @@ "plasmid_name": "pGGEV_7'_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49308", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -89887,7 +113252,10 @@ "plasmid_name": "907F1", "sequence-type": "addgene-full", "addgene_id": "160233", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160233.addgene-full.gb" }, @@ -89896,7 +113264,10 @@ "plasmid_name": "pAG424GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14368", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -89908,7 +113279,10 @@ "plasmid_name": "pGWB528", "sequence-type": "depositor-full", "addgene_id": "74870", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74870.depositor-full.gb" }, @@ -89917,7 +113291,10 @@ "plasmid_name": "JL302: pMVP/Puro-DEST", "sequence-type": "addgene-full", "addgene_id": "121856", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121856.addgene-full.gb" }, @@ -89926,7 +113303,10 @@ "plasmid_name": "pDONR223_CCDC90A_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82992", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82992.addgene-full.gb" }, @@ -89935,7 +113315,6 @@ "plasmid_name": "R777-E057 Hs.EIF4EBP2", "sequence-type": "depositor-full", "addgene_id": "70341", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -89947,7 +113326,10 @@ "plasmid_name": "pGWB402-omega", "sequence-type": "depositor-full", "addgene_id": "74797", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74797.depositor-full.gb" }, @@ -89956,7 +113338,6 @@ "plasmid_name": "pENTRY4_ Pi21", "sequence-type": "addgene-full", "addgene_id": "126904", - "references": [], "kit": null, "file": "data/addgene_plasmids/126904.addgene-full.gb" }, @@ -89965,7 +113346,10 @@ "plasmid_name": "pYPQ145", "sequence-type": "depositor-full", "addgene_id": "69297", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69297.depositor-full.gb" }, @@ -89974,7 +113358,10 @@ "plasmid_name": "pDONR221-SLC30A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161243", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161243.addgene-full.gb" }, @@ -89983,7 +113370,10 @@ "plasmid_name": "5'-BirA-FLAG Sap30bp+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212093", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212093.addgene-full.gb" }, @@ -89992,7 +113382,10 @@ "plasmid_name": "pCWXPG-UBI-MafA", "sequence-type": "addgene-full", "addgene_id": "114302", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "file": "data/addgene_plasmids/114302.addgene-full.gb" }, @@ -90001,7 +113394,10 @@ "plasmid_name": "pDONR223_NRAS_p.Y64D", "sequence-type": "addgene-full", "addgene_id": "81666", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90013,7 +113409,10 @@ "plasmid_name": "SIN-cPPT-H1-sgHTT1-U6-sgGFP2-7SK-sgCas9-PGK-mCherry-WPRE", "sequence-type": "addgene-full", "addgene_id": "87919", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87919.addgene-full.gb" }, @@ -90022,7 +113421,10 @@ "plasmid_name": "pME-loxP-mTagBFP2-stop-pA-loxP", "sequence-type": "depositor-full", "addgene_id": "75158", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -90034,7 +113436,10 @@ "plasmid_name": "TFORF2976", "sequence-type": "addgene-full", "addgene_id": "144452", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144452.addgene-full.gb" }, @@ -90043,7 +113448,10 @@ "plasmid_name": "MiniCoopR U6:gRNA spred1, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118843", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118843.addgene-full.gb" }, @@ -90052,7 +113460,10 @@ "plasmid_name": "pHAGE-ERBB2-G776S", "sequence-type": "addgene-full", "addgene_id": "116332", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116332.addgene-full.gb" }, @@ -90061,7 +113472,10 @@ "plasmid_name": "TFORF3330", "sequence-type": "addgene-full", "addgene_id": "144806", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144806.addgene-full.gb" }, @@ -90070,7 +113484,10 @@ "plasmid_name": "pcDNA3.2/NS4A", "sequence-type": "addgene-full", "addgene_id": "120826", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120826.addgene-full.gb" }, @@ -90079,7 +113496,10 @@ "plasmid_name": "p3E-rab35b", "sequence-type": "addgene-full", "addgene_id": "109696", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109696.addgene-full.gb" }, @@ -90088,7 +113508,10 @@ "plasmid_name": "pDONR221_SLC16A7", "sequence-type": "addgene-full", "addgene_id": "131947", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131947.addgene-full.gb" }, @@ -90097,7 +113520,10 @@ "plasmid_name": "pdRBFC-B2-YN", "sequence-type": "addgene-full", "addgene_id": "74721", - "references": [], + "references": [ + "https://doi.org/10.1016/j.virol.2015.08.023", + "https://www.ncbi.nlm.nih.gov/pubmed/26351203" + ], "kit": null, "file": "data/addgene_plasmids/74721.addgene-full.gb" }, @@ -90106,7 +113532,10 @@ "plasmid_name": "pDONR223_SYCP1_p.E509K", "sequence-type": "addgene-full", "addgene_id": "81586", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90118,7 +113547,10 @@ "plasmid_name": "pLenti-CMVSP6-nEGFP-SV40-PURO", "sequence-type": "addgene-full", "addgene_id": "138364", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138364.addgene-full.gb" }, @@ -90127,7 +113559,10 @@ "plasmid_name": "pEBTet-SNAP-CPAP", "sequence-type": "addgene-full", "addgene_id": "136815", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136815.addgene-full.gb" }, @@ -90136,7 +113571,10 @@ "plasmid_name": "pDONR221 Dbp9", "sequence-type": "depositor-full", "addgene_id": "63743", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63743.depositor-full.gb" }, @@ -90145,7 +113583,10 @@ "plasmid_name": "II701: pMVP (L1-L4) cTnT promoter", "sequence-type": "addgene-full", "addgene_id": "121690", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121690.addgene-full.gb" }, @@ -90154,7 +113595,10 @@ "plasmid_name": "pDONR223_TP53_WT", "sequence-type": "addgene-full", "addgene_id": "82754", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82754.addgene-full.gb" }, @@ -90163,7 +113607,10 @@ "plasmid_name": "pDONR221-SLC26A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161138", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161138.addgene-full.gb" }, @@ -90172,7 +113619,6 @@ "plasmid_name": "R777-E287 Hs.ROS1", "sequence-type": "depositor-full", "addgene_id": "70571", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -90184,7 +113630,10 @@ "plasmid_name": "MLKP1delKASHec", "sequence-type": "addgene-full", "addgene_id": "130845", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130845.addgene-full.gb" }, @@ -90193,7 +113642,10 @@ "plasmid_name": "pDEST_6xUAS:lyn-tagRFPt", "sequence-type": "addgene-full", "addgene_id": "192354", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.82094", + "https://www.ncbi.nlm.nih.gov/pubmed/36398880" + ], "kit": null, "file": "data/addgene_plasmids/192354.addgene-full.gb" }, @@ -90202,7 +113654,10 @@ "plasmid_name": "TFORF3253", "sequence-type": "addgene-full", "addgene_id": "144729", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144729.addgene-full.gb" }, @@ -90211,7 +113666,10 @@ "plasmid_name": "pENTR221 UBR5", "sequence-type": "depositor-full", "addgene_id": "81062", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "file": "data/addgene_plasmids/81062.depositor-full.gb" }, @@ -90220,7 +113678,10 @@ "plasmid_name": "pENT-L1-Kozak-HistoneH2B-L2", "sequence-type": "addgene-full", "addgene_id": "186357", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186357.addgene-full.gb" }, @@ -90229,7 +113690,10 @@ "plasmid_name": "pKG-GW2-NUS1", "sequence-type": "addgene-full", "addgene_id": "203169", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "file": "data/addgene_plasmids/203169.addgene-full.gb" }, @@ -90238,7 +113702,10 @@ "plasmid_name": "pDONR221 CARD8", "sequence-type": "addgene-full", "addgene_id": "169962", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169962.addgene-full.gb" }, @@ -90247,7 +113714,10 @@ "plasmid_name": "pCM1.36", "sequence-type": "depositor-full", "addgene_id": "17249", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/17249.depositor-full.gb" }, @@ -90256,7 +113726,10 @@ "plasmid_name": "pSLIK TT 3xFLAG Luciferase neo", "sequence-type": "addgene-full", "addgene_id": "98392", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98392.addgene-full.gb" }, @@ -90265,7 +113738,10 @@ "plasmid_name": "pAB(EXPR-DS-HDAC5_HDAC3)", "sequence-type": "addgene-full", "addgene_id": "114399", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114399.addgene-full.gb" }, @@ -90274,7 +113750,10 @@ "plasmid_name": "TFORF3473", "sequence-type": "addgene-full", "addgene_id": "144949", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144949.addgene-full.gb" }, @@ -90283,7 +113762,10 @@ "plasmid_name": "IG510: pMVP (R4-R3) human PDX1", "sequence-type": "addgene-full", "addgene_id": "121744", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121744.addgene-full.gb" }, @@ -90292,7 +113774,10 @@ "plasmid_name": "pDONR223_DAXX_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82934", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82934.addgene-full.gb" }, @@ -90301,7 +113786,10 @@ "plasmid_name": "A1-LCD-9F+3Y", "sequence-type": "addgene-full", "addgene_id": "178663", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178663.addgene-full.gb" }, @@ -90310,7 +113798,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.E203K", "sequence-type": "addgene-full", "addgene_id": "81729", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90322,7 +113813,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF3b", "sequence-type": "depositor-full", "addgene_id": "168878", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168878.depositor-full.gb" }, @@ -90331,7 +113825,6 @@ "plasmid_name": "pCFJ210", "sequence-type": "depositor-full", "addgene_id": "30538", - "references": [], "kit": null, "file": "data/addgene_plasmids/30538.depositor-full.gb" }, @@ -90340,7 +113833,10 @@ "plasmid_name": "TFORF3110", "sequence-type": "addgene-full", "addgene_id": "144586", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144586.addgene-full.gb" }, @@ -90349,7 +113845,6 @@ "plasmid_name": "pHAGE pGK LC3Flux (HaloTag7-mGFP-LC3-STOP)", "sequence-type": "addgene-full", "addgene_id": "215015", - "references": [], "kit": null, "file": "data/addgene_plasmids/215015.addgene-full.gb" }, @@ -90358,7 +113853,10 @@ "plasmid_name": "pAAV_GWRev_Dest", "sequence-type": "addgene-full", "addgene_id": "86954", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1918241117", + "https://www.ncbi.nlm.nih.gov/pubmed/32300008" + ], "kit": null, "file": "data/addgene_plasmids/86954.addgene-full.gb" }, @@ -90367,7 +113865,10 @@ "plasmid_name": "pHAGE-AKT3-S370P", "sequence-type": "addgene-full", "addgene_id": "116106", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116106.addgene-full.gb" }, @@ -90376,7 +113877,10 @@ "plasmid_name": "pLenti-PGK-EGFP-ALDH1A3-Neo", "sequence-type": "addgene-full", "addgene_id": "189744", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "file": "data/addgene_plasmids/189744.addgene-full.gb" }, @@ -90385,7 +113889,10 @@ "plasmid_name": "pDONR221-SLC6A19_STOP", "sequence-type": "addgene-full", "addgene_id": "161397", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161397.addgene-full.gb" }, @@ -90394,7 +113901,10 @@ "plasmid_name": "p6325 pHAGE-P-CMVt-N-HA-GAW-HERC2-F1", "sequence-type": "addgene-full", "addgene_id": "100135", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100135.addgene-full.gb" }, @@ -90403,7 +113913,10 @@ "plasmid_name": "pDONR223_C20orf72_WT", "sequence-type": "addgene-full", "addgene_id": "81806", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90415,7 +113928,10 @@ "plasmid_name": "pDONR223_SMAD4_p.D537Y", "sequence-type": "addgene-full", "addgene_id": "81452", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90427,7 +113943,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_V205F", "sequence-type": "addgene-full", "addgene_id": "221485", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221485.addgene-full.gb" }, @@ -90436,7 +113955,9 @@ "plasmid_name": "nTALECD for_TUB4S351F_1397NC", "sequence-type": "addgene-full", "addgene_id": "193382", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "file": "data/addgene_plasmids/193382.addgene-full.gb" }, @@ -90445,7 +113966,10 @@ "plasmid_name": "pDONR221-SLC16A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161077", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161077.addgene-full.gb" }, @@ -90454,7 +113978,10 @@ "plasmid_name": "plenti-CAG-IKZF1-V1-FLAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "107387", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107387.addgene-full.gb" }, @@ -90463,7 +113990,10 @@ "plasmid_name": "pT3-EF1aH NICD1", "sequence-type": "addgene-full", "addgene_id": "86500", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI63212", + "https://www.ncbi.nlm.nih.gov/pubmed/22797301" + ], "kit": null, "file": "data/addgene_plasmids/86500.addgene-full.gb" }, @@ -90472,7 +114002,10 @@ "plasmid_name": "TFORF3190", "sequence-type": "addgene-full", "addgene_id": "144666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144666.addgene-full.gb" }, @@ -90481,7 +114014,10 @@ "plasmid_name": "pDONR221_MFSD2A", "sequence-type": "addgene-full", "addgene_id": "131893", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131893.addgene-full.gb" }, @@ -90490,7 +114026,10 @@ "plasmid_name": "pDONR221-SLC25A53_STOP", "sequence-type": "depositor-full", "addgene_id": "161209", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161209.depositor-full.gb" }, @@ -90499,7 +114038,10 @@ "plasmid_name": "pMMK ENTR 2 hU6 HEK3 PegRNA", "sequence-type": "addgene-full", "addgene_id": "206277", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206277.addgene-full.gb" }, @@ -90508,7 +114050,10 @@ "plasmid_name": "pCMU-PMr", "sequence-type": "depositor-full", "addgene_id": "61180", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61180.depositor-full.gb" }, @@ -90517,7 +114062,10 @@ "plasmid_name": "pDONR223_PRDM1_WT", "sequence-type": "addgene-full", "addgene_id": "81761", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81761.addgene-full.gb" }, @@ -90538,7 +114086,10 @@ "plasmid_name": "pDONR221-SLC43A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161344", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161344.addgene-full.gb" }, @@ -90547,7 +114098,10 @@ "plasmid_name": "pEntry_HCoV-229E-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168967", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168967.addgene-full.gb" }, @@ -90556,7 +114110,9 @@ "plasmid_name": "pDONR221-STARD10", "sequence-type": "addgene-full", "addgene_id": "166216", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166216.addgene-full.gb" }, @@ -90565,7 +114121,10 @@ "plasmid_name": "pBSDONR P1-P4", "sequence-type": "addgene-full", "addgene_id": "71744", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.110.171785", + "https://www.ncbi.nlm.nih.gov/pubmed/21343429" + ], "kit": null, "file": "data/addgene_plasmids/71744.addgene-full.gb" }, @@ -90574,7 +114133,10 @@ "plasmid_name": "pPV-EF1a-2xNLS-Cas7-Cas5-Cse1-iCA", "sequence-type": "addgene-full", "addgene_id": "134922", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-13226-x", + "https://www.ncbi.nlm.nih.gov/pubmed/31811138" + ], "kit": null, "file": "data/addgene_plasmids/134922.addgene-full.gb" }, @@ -90583,7 +114145,10 @@ "plasmid_name": "TFORF3079", "sequence-type": "addgene-full", "addgene_id": "144555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144555.addgene-full.gb" }, @@ -90592,7 +114157,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF3a_nostop", "sequence-type": "addgene-full", "addgene_id": "168533", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168533.addgene-full.gb" }, @@ -90601,7 +114169,10 @@ "plasmid_name": "pHAGE-EGFR-A859T", "sequence-type": "addgene-full", "addgene_id": "116235", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116235.addgene-full.gb" }, @@ -90610,7 +114181,6 @@ "plasmid_name": "p663-UBC-V5-miniTurbo-V5-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158158", - "references": [], "kit": null, "file": "data/addgene_plasmids/158158.addgene-full.gb" }, @@ -90619,7 +114189,10 @@ "plasmid_name": "TFORF3425", "sequence-type": "addgene-full", "addgene_id": "144901", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144901.addgene-full.gb" }, @@ -90628,7 +114201,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 K295R", "sequence-type": "addgene-full", "addgene_id": "129302", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129302.addgene-full.gb" }, @@ -90637,7 +114213,10 @@ "plasmid_name": "pDONR223_ARSI_p.V373M", "sequence-type": "addgene-full", "addgene_id": "81481", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90649,7 +114228,10 @@ "plasmid_name": "plenti-UbcP-IKZF2-V2-3xHA-pGK-Pur", "sequence-type": "addgene-full", "addgene_id": "69052", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/69052.addgene-full.gb" }, @@ -90658,7 +114240,10 @@ "plasmid_name": "IB801: pMAGIC (R4-R3) NLS-Sa dCas9-NLS-KRAB", "sequence-type": "addgene-full", "addgene_id": "121823", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121823.addgene-full.gb" }, @@ -90667,7 +114252,10 @@ "plasmid_name": "pEPYCdKN0001", "sequence-type": "addgene-full", "addgene_id": "196148", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196148.addgene-full.gb" }, @@ -90676,7 +114264,10 @@ "plasmid_name": "JD404: pMVP (L3-L2) BioID2 + WPRE", "sequence-type": "addgene-full", "addgene_id": "121797", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121797.addgene-full.gb" }, @@ -90685,7 +114276,10 @@ "plasmid_name": "Active Wnt7A-V5", "sequence-type": "depositor-full", "addgene_id": "43816", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43816.depositor-full.gb" }, @@ -90694,7 +114288,10 @@ "plasmid_name": "pME-Kaede", "sequence-type": "addgene-full", "addgene_id": "132972", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132972.addgene-full.gb" }, @@ -90703,7 +114300,9 @@ "plasmid_name": "pMpGWB121", "sequence-type": "depositor-full", "addgene_id": "68575", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68575.depositor-full.gb" }, @@ -90712,7 +114311,10 @@ "plasmid_name": "SIN-cPPT-H1-sgHTT1-PGK-mCherry-WPRE", "sequence-type": "addgene-full", "addgene_id": "87885", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87885.addgene-full.gb" }, @@ -90721,7 +114323,9 @@ "plasmid_name": "pPB-cT3G-cERP2-STRA8", "sequence-type": "addgene-full", "addgene_id": "222564", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222564.addgene-full.gb" }, @@ -90730,7 +114334,10 @@ "plasmid_name": "pYPQ284-v1", "sequence-type": "addgene-full", "addgene_id": "138118", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138118.addgene-full.gb" }, @@ -90739,7 +114346,9 @@ "plasmid_name": "pDRFLIP42", "sequence-type": "depositor-full", "addgene_id": "65518", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65518.depositor-full.gb" }, @@ -90748,7 +114357,10 @@ "plasmid_name": "pDONR223_BRAF_p.G469V", "sequence-type": "addgene-full", "addgene_id": "82833", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82833.addgene-full.gb" }, @@ -90757,7 +114369,6 @@ "plasmid_name": "pSCM167-Flag-hSFRP1", "sequence-type": "addgene-full", "addgene_id": "189538", - "references": [], "kit": null, "file": "data/addgene_plasmids/189538.addgene-full.gb" }, @@ -90766,7 +114377,6 @@ "plasmid_name": "R777-E104 Hs.ICMT-nostop", "sequence-type": "depositor-full", "addgene_id": "70388", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -90778,7 +114388,6 @@ "plasmid_name": "MAPK8_BirA_Cterm", "sequence-type": "addgene-full", "addgene_id": "221519", - "references": [], "kit": null, "file": "data/addgene_plasmids/221519.addgene-full.gb" }, @@ -90787,7 +114396,10 @@ "plasmid_name": "pDONR223_ZBTB24_p.M78I", "sequence-type": "addgene-full", "addgene_id": "82787", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82787.addgene-full.gb" }, @@ -90796,7 +114408,10 @@ "plasmid_name": "p35S_EVDdi", "sequence-type": "addgene-full", "addgene_id": "167120", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.220723.117", + "https://www.ncbi.nlm.nih.gov/pubmed/28784835" + ], "kit": null, "file": "data/addgene_plasmids/167120.addgene-full.gb" }, @@ -90805,7 +114420,10 @@ "plasmid_name": "pFPL-Rg", "sequence-type": "depositor-full", "addgene_id": "61654", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-05-14-0144-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/25390188" + ], "kit": null, "file": "data/addgene_plasmids/61654.depositor-full.gb" }, @@ -90814,7 +114432,6 @@ "plasmid_name": "R777-E128 Hs.MAPK3-nostop", "sequence-type": "depositor-full", "addgene_id": "70412", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -90826,7 +114443,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mVenus-RfA", "sequence-type": "addgene-full", "addgene_id": "186384", - "references": [], "kit": null, "file": "data/addgene_plasmids/186384.addgene-full.gb" }, @@ -90835,7 +114451,10 @@ "plasmid_name": "JD553", "sequence-type": "addgene-full", "addgene_id": "160392", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0703-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33046875" + ], "kit": null, "file": "data/addgene_plasmids/160392.addgene-full.gb" }, @@ -90844,7 +114463,10 @@ "plasmid_name": "pMuLE ENTR SV40 eGFP L3-L2", "sequence-type": "depositor-full", "addgene_id": "62145", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62145.depositor-full.gb" }, @@ -90853,7 +114475,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp6", "sequence-type": "depositor-full", "addgene_id": "168955", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168955.depositor-full.gb" }, @@ -90862,7 +114487,10 @@ "plasmid_name": "TFORF3005", "sequence-type": "addgene-full", "addgene_id": "144481", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144481.addgene-full.gb" }, @@ -90871,7 +114499,10 @@ "plasmid_name": "pCM5.51", "sequence-type": "depositor-full", "addgene_id": "19382", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19382.depositor-full.gb" }, @@ -90880,7 +114511,10 @@ "plasmid_name": "pDONR223_NRAS_WT", "sequence-type": "addgene-full", "addgene_id": "81901", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90892,7 +114526,10 @@ "plasmid_name": "WT TXNIP", "sequence-type": "addgene-full", "addgene_id": "200088", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2023.106150", + "https://www.ncbi.nlm.nih.gov/pubmed/36890792" + ], "kit": null, "file": "data/addgene_plasmids/200088.addgene-full.gb" }, @@ -90901,7 +114538,10 @@ "plasmid_name": "pCFJ1258", "sequence-type": "depositor-full", "addgene_id": "44478", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2889", + "https://www.ncbi.nlm.nih.gov/pubmed/24820376" + ], "kit": null, "file": "data/addgene_plasmids/44478.depositor-full.gb" }, @@ -90910,7 +114550,10 @@ "plasmid_name": "pDONR221-SLC25A27_STOP", "sequence-type": "addgene-full", "addgene_id": "161170", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161170.addgene-full.gb" }, @@ -90919,7 +114562,10 @@ "plasmid_name": "pDEST26 Ago2 S387A", "sequence-type": "depositor-full", "addgene_id": "59905", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2013.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/23603119" + ], "kit": null, "file": "data/addgene_plasmids/59905.depositor-full.gb" }, @@ -90928,7 +114574,10 @@ "plasmid_name": "pDONR223_XPO1_p.R553C", "sequence-type": "addgene-full", "addgene_id": "81555", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -90940,7 +114589,10 @@ "plasmid_name": "actc1b-mKate2-rab44", "sequence-type": "addgene-full", "addgene_id": "109645", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109645.addgene-full.gb" }, @@ -90949,7 +114601,10 @@ "plasmid_name": "pT3EF5a-PIK3CA H1047R", "sequence-type": "addgene-full", "addgene_id": "180034", - "references": [], + "references": [ + "https://doi.org/10.1111/liv.13055", + "https://www.ncbi.nlm.nih.gov/pubmed/26716908" + ], "kit": null, "file": "data/addgene_plasmids/180034.addgene-full.gb" }, @@ -90958,7 +114613,10 @@ "plasmid_name": "TFORF3285", "sequence-type": "addgene-full", "addgene_id": "144761", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144761.addgene-full.gb" }, @@ -90967,7 +114625,10 @@ "plasmid_name": "pDONR221_SLC25A40", "sequence-type": "addgene-full", "addgene_id": "131994", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131994.addgene-full.gb" }, @@ -90976,7 +114637,10 @@ "plasmid_name": "pLVX-Flag-PolB(T304I)-Puro", "sequence-type": "addgene-full", "addgene_id": "177143", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkz293", + "https://www.ncbi.nlm.nih.gov/pubmed/31287140" + ], "kit": null, "file": "data/addgene_plasmids/177143.addgene-full.gb" }, @@ -90985,7 +114649,6 @@ "plasmid_name": "Hs.NRAS G12C", "sequence-type": "depositor-full", "addgene_id": "83175", - "references": [], "kit": null, "file": "data/addgene_plasmids/83175.depositor-full.gb" }, @@ -90994,7 +114657,10 @@ "plasmid_name": "pDONR221-SLC3A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161379", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161379.addgene-full.gb" }, @@ -91003,7 +114669,9 @@ "plasmid_name": "pME-myc-BirA (JDW 1210)", "sequence-type": "addgene-full", "addgene_id": "224509", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224509.addgene-full.gb" }, @@ -91012,7 +114680,10 @@ "plasmid_name": "pENTR D-TOPO-C3_20", "sequence-type": "depositor-full", "addgene_id": "60266", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60266.depositor-full.gb" }, @@ -91033,7 +114704,10 @@ "plasmid_name": "pENTR4_PRKRA", "sequence-type": "addgene-full", "addgene_id": "106110", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106110.addgene-full.gb" }, @@ -91042,7 +114716,10 @@ "plasmid_name": "TFORF3092", "sequence-type": "addgene-full", "addgene_id": "144568", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144568.addgene-full.gb" }, @@ -91051,7 +114728,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-GSK3B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158165", - "references": [], "kit": null, "file": "data/addgene_plasmids/158165.addgene-full.gb" }, @@ -91060,7 +114736,10 @@ "plasmid_name": "pHAGE-BRAF-V600M", "sequence-type": "addgene-full", "addgene_id": "116208", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116208.addgene-full.gb" }, @@ -91069,7 +114748,10 @@ "plasmid_name": "TFORF3212", "sequence-type": "addgene-full", "addgene_id": "144688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144688.addgene-full.gb" }, @@ -91078,7 +114760,10 @@ "plasmid_name": "pLX304_zeo_mmMavs_V5", "sequence-type": "addgene-full", "addgene_id": "160100", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160100.addgene-full.gb" }, @@ -91087,7 +114772,10 @@ "plasmid_name": "IO102: pMVP (R4-R3) eGFP open", "sequence-type": "addgene-full", "addgene_id": "121731", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121731.addgene-full.gb" }, @@ -91096,7 +114784,6 @@ "plasmid_name": "R777-E216 Hs.RALA-nostop", "sequence-type": "addgene-full", "addgene_id": "70500", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -91108,7 +114795,6 @@ "plasmid_name": "pGEX6P1-DEST-FLAG", "sequence-type": "addgene-full", "addgene_id": "119754", - "references": [], "kit": null, "file": "data/addgene_plasmids/119754.addgene-full.gb" }, @@ -91117,7 +114803,10 @@ "plasmid_name": "pDONR223_HSD17B10_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82941", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82941.addgene-full.gb" }, @@ -91126,7 +114815,10 @@ "plasmid_name": "pDONR223_IRF4_p.K123R", "sequence-type": "addgene-full", "addgene_id": "81427", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -91138,7 +114830,10 @@ "plasmid_name": "pcDNA3.2 TDP-43 YFP", "sequence-type": "addgene-full", "addgene_id": "84911", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09320", + "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + ], "kit": null, "file": "data/addgene_plasmids/84911.addgene-full.gb" }, @@ -91147,7 +114842,9 @@ "plasmid_name": "pDEST17-His10-Smt3-DDX5\u0394PrD(kf)-SNAP", "sequence-type": "addgene-full", "addgene_id": "166150", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166150.addgene-full.gb" }, @@ -91156,7 +114853,10 @@ "plasmid_name": "pHAGE-EGFR-R222C", "sequence-type": "addgene-full", "addgene_id": "116293", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116293.addgene-full.gb" }, @@ -91165,7 +114865,10 @@ "plasmid_name": "pAC1822_pCR8-dCasRx", "sequence-type": "addgene-full", "addgene_id": "118656", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118656.addgene-full.gb" }, @@ -91174,7 +114877,10 @@ "plasmid_name": "TFORF3137", "sequence-type": "addgene-full", "addgene_id": "144613", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144613.addgene-full.gb" }, @@ -91183,7 +114889,10 @@ "plasmid_name": "p3E-rab5c-DN", "sequence-type": "addgene-full", "addgene_id": "109737", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109737.addgene-full.gb" }, @@ -91192,7 +114901,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 NSP12_stop", "sequence-type": "addgene-full", "addgene_id": "168595", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168595.addgene-full.gb" }, @@ -91201,7 +114913,10 @@ "plasmid_name": "GFP-ZMYND8", "sequence-type": "addgene-full", "addgene_id": "65401", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65401.addgene-full.gb" }, @@ -91210,7 +114925,10 @@ "plasmid_name": "pHAGE-BRAF-L485F", "sequence-type": "addgene-full", "addgene_id": "116173", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116173.addgene-full.gb" }, @@ -91219,7 +114937,10 @@ "plasmid_name": "pDONR223-ZNF397", "sequence-type": "addgene-full", "addgene_id": "88250", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88250.addgene-full.gb" }, @@ -91228,7 +114949,10 @@ "plasmid_name": "p6330 pHAGE-P-CMVt-N-HA-GAW-HERC2-F6", "sequence-type": "addgene-full", "addgene_id": "100140", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100140.addgene-full.gb" }, @@ -91237,7 +114961,10 @@ "plasmid_name": "pDONR223_POU2F2_WT", "sequence-type": "addgene-full", "addgene_id": "81873", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -91249,7 +114976,10 @@ "plasmid_name": "p{3P3-dsRed::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182176", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182176.addgene-full.gb" }, @@ -91258,7 +114988,6 @@ "plasmid_name": "p667-UBC-COQ8A-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189885", - "references": [], "kit": null, "file": "data/addgene_plasmids/189885.addgene-full.gb" }, @@ -91267,7 +114996,10 @@ "plasmid_name": "pYPQ288 (BoCas12a)", "sequence-type": "addgene-full", "addgene_id": "138125", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138125.addgene-full.gb" }, @@ -91276,7 +115008,9 @@ "plasmid_name": "pPB-cT3G-cERP2-NELFE", "sequence-type": "addgene-full", "addgene_id": "222559", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222559.addgene-full.gb" }, @@ -91285,7 +115019,6 @@ "plasmid_name": "pENTRY4_ HDT701", "sequence-type": "addgene-full", "addgene_id": "126898", - "references": [], "kit": null, "file": "data/addgene_plasmids/126898.addgene-full.gb" }, @@ -91294,7 +115027,10 @@ "plasmid_name": "TFORF3397", "sequence-type": "addgene-full", "addgene_id": "144873", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144873.addgene-full.gb" }, @@ -91303,7 +115039,10 @@ "plasmid_name": "pcDNA3_SP-AVPR2-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194371", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194371.addgene-full.gb" }, @@ -91312,7 +115051,10 @@ "plasmid_name": "pHAGE-ERBB2-R678Q", "sequence-type": "addgene-full", "addgene_id": "116347", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116347.addgene-full.gb" }, @@ -91321,7 +115063,10 @@ "plasmid_name": "pDONR221_SLC12A4", "sequence-type": "addgene-full", "addgene_id": "131932", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131932.addgene-full.gb" }, @@ -91330,7 +115075,6 @@ "plasmid_name": "PSMC3_BirA_Nterm", "sequence-type": "addgene-full", "addgene_id": "221524", - "references": [], "kit": null, "file": "data/addgene_plasmids/221524.addgene-full.gb" }, @@ -91339,7 +115083,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep63", "sequence-type": "addgene-full", "addgene_id": "136860", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136860.addgene-full.gb" }, @@ -91348,7 +115095,10 @@ "plasmid_name": "pBSWHhc-Lam", "sequence-type": "addgene-full", "addgene_id": "133902", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/133902.addgene-full.gb" }, @@ -91357,7 +115107,10 @@ "plasmid_name": "pAG423GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14245", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -91369,7 +115122,10 @@ "plasmid_name": "pDONR221-SLC38A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161236", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161236.addgene-full.gb" }, @@ -91378,7 +115134,10 @@ "plasmid_name": "pDONR223_LCE1B_p.G102C", "sequence-type": "addgene-full", "addgene_id": "81613", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -91390,7 +115149,10 @@ "plasmid_name": "TFORF2951", "sequence-type": "addgene-full", "addgene_id": "144427", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144427.addgene-full.gb" }, @@ -91399,7 +115161,10 @@ "plasmid_name": "actc1b-mKate2-FAPP1", "sequence-type": "addgene-full", "addgene_id": "109503", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109503.addgene-full.gb" }, @@ -91408,7 +115173,9 @@ "plasmid_name": "pMpGWB231", "sequence-type": "depositor-full", "addgene_id": "68622", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68622.depositor-full.gb" }, @@ -91417,7 +115184,10 @@ "plasmid_name": "pENTR-L3-HCN1miR-EGFP-L2", "sequence-type": "depositor-full", "addgene_id": "32585", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32585.depositor-full.gb" }, @@ -91426,7 +115196,10 @@ "plasmid_name": "actc1b-mKate2-rab12", "sequence-type": "addgene-full", "addgene_id": "109598", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109598.addgene-full.gb" }, @@ -91435,7 +115208,10 @@ "plasmid_name": "pLSLZ.D", "sequence-type": "depositor-full", "addgene_id": "51496", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51496.depositor-full.gb" }, @@ -91444,7 +115220,10 @@ "plasmid_name": "pMartini Gate B R2-R1", "sequence-type": "depositor-full", "addgene_id": "36434", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "file": "data/addgene_plasmids/36434.depositor-full.gb" }, @@ -91453,7 +115232,10 @@ "plasmid_name": "pDONR223_MAP4K3_p.R753Q", "sequence-type": "addgene-full", "addgene_id": "81688", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -91465,7 +115247,10 @@ "plasmid_name": "pDONR223_ERBB2IP_p.I979M", "sequence-type": "addgene-full", "addgene_id": "81568", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -91477,7 +115262,10 @@ "plasmid_name": "ECPK1D", "sequence-type": "addgene-full", "addgene_id": "130830", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130830.addgene-full.gb" }, @@ -91486,7 +115274,10 @@ "plasmid_name": "pDONR223_CGREF1_WT", "sequence-type": "addgene-full", "addgene_id": "82895", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82895.addgene-full.gb" }, @@ -91495,7 +115286,10 @@ "plasmid_name": "p3E-rab21", "sequence-type": "addgene-full", "addgene_id": "109678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109678.addgene-full.gb" }, @@ -91504,7 +115298,10 @@ "plasmid_name": "pSLIK 3xFLAG-DYNLL2 zeo", "sequence-type": "addgene-full", "addgene_id": "192321", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192321.addgene-full.gb" }, @@ -91513,7 +115310,10 @@ "plasmid_name": "pYPQ230 (LbCpf1)", "sequence-type": "addgene-full", "addgene_id": "86210", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "file": "data/addgene_plasmids/86210.addgene-full.gb" }, @@ -91522,7 +115322,10 @@ "plasmid_name": "pMXs-Pax6", "sequence-type": "addgene-full", "addgene_id": "32932", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2011.07.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21852222" + ], "kit": null, "file": "data/addgene_plasmids/32932.addgene-full.gb" }, @@ -91531,7 +115334,10 @@ "plasmid_name": "pDONRG_P4-P1R:MUM4_0.3Pro_35S", "sequence-type": "addgene-full", "addgene_id": "128558", - "references": [], + "references": [ + "https://doi.org/10.1007/s11103-017-0631-7", + "https://www.ncbi.nlm.nih.gov/pubmed/28730525" + ], "kit": null, "file": "data/addgene_plasmids/128558.addgene-full.gb" }, @@ -91540,7 +115346,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-SCYL3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170606", - "references": [], "kit": null, "file": "data/addgene_plasmids/170606.addgene-full.gb" }, @@ -91549,7 +115354,10 @@ "plasmid_name": "pXint129", "sequence-type": "addgene-full", "addgene_id": "178208", - "references": [], + "references": [ + "https://doi.org/10.1006/plas.1999.1433", + "https://www.ncbi.nlm.nih.gov/pubmed/10610816" + ], "kit": null, "file": "data/addgene_plasmids/178208.addgene-full.gb" }, @@ -91558,7 +115366,10 @@ "plasmid_name": "pLX311_TRIP13", "sequence-type": "addgene-full", "addgene_id": "184538", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-024-06140-6", + "https://www.ncbi.nlm.nih.gov/pubmed/38589567" + ], "kit": null, "file": "data/addgene_plasmids/184538.addgene-full.gb" }, @@ -91567,7 +115378,10 @@ "plasmid_name": "pDONR223_OR2G6_p.K236M", "sequence-type": "addgene-full", "addgene_id": "81342", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -91579,7 +115393,6 @@ "plasmid_name": "R777-E074 Hs.EXOC4-nostop", "sequence-type": "depositor-full", "addgene_id": "70358", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -91591,7 +115404,10 @@ "plasmid_name": "pHAGE-eGFP-OPTN S513A", "sequence-type": "addgene-full", "addgene_id": "175764", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175764.addgene-full.gb" }, @@ -91600,7 +115416,10 @@ "plasmid_name": "pGGEV_3_FRT_+1_OA-", "sequence-type": "depositor-full", "addgene_id": "49311", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -91612,7 +115431,10 @@ "plasmid_name": "pEF5-FRT-TagRFP-T-IFT88", "sequence-type": "depositor-full", "addgene_id": "61684", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.00654", + "https://www.ncbi.nlm.nih.gov/pubmed/23930224" + ], "kit": null, "file": "data/addgene_plasmids/61684.depositor-full.gb" }, @@ -91621,7 +115443,6 @@ "plasmid_name": "pcDNA3.1-Firefly-ccdB", "sequence-type": "addgene-full", "addgene_id": "87069", - "references": [], "kit": null, "file": "data/addgene_plasmids/87069.addgene-full.gb" }, @@ -91630,7 +115451,10 @@ "plasmid_name": "pE6n", "sequence-type": "depositor-full", "addgene_id": "17460", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17460.depositor-full.gb" }, @@ -91639,7 +115463,10 @@ "plasmid_name": "pENTR221-APP751", "sequence-type": "addgene-full", "addgene_id": "193772", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33881-x", + "https://www.ncbi.nlm.nih.gov/pubmed/36245040" + ], "kit": null, "file": "data/addgene_plasmids/193772.addgene-full.gb" }, @@ -91648,7 +115475,10 @@ "plasmid_name": "pDONR-P3P1r", "sequence-type": "addgene-full", "addgene_id": "141014", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141014.addgene-full.gb" }, @@ -91657,7 +115487,10 @@ "plasmid_name": "pGC163", "sequence-type": "depositor-full", "addgene_id": "19635", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19635.depositor-full.gb" }, @@ -91666,7 +115499,10 @@ "plasmid_name": "pHAGE-PTCH1-T768I", "sequence-type": "addgene-full", "addgene_id": "116616", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116616.addgene-full.gb" }, @@ -91675,7 +115511,10 @@ "plasmid_name": "pENTR221-PGK.Pro", "sequence-type": "addgene-full", "addgene_id": "79489", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79489.addgene-full.gb" }, @@ -91684,7 +115523,10 @@ "plasmid_name": "pcDNA5FRT/TO-HOIP-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113494", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113494.addgene-full.gb" }, @@ -91693,7 +115535,10 @@ "plasmid_name": "pAG426GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14371", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -91705,7 +115550,10 @@ "plasmid_name": "pGWB527", "sequence-type": "depositor-full", "addgene_id": "74869", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74869.depositor-full.gb" }, @@ -91714,7 +115562,10 @@ "plasmid_name": "pDONR221_SLC39A14", "sequence-type": "addgene-full", "addgene_id": "132105", - "references": [], + "references": [ + "https://doi.org/10.1007/s10534-022-00474-6", + "https://www.ncbi.nlm.nih.gov/pubmed/36454509" + ], "kit": null, "file": "data/addgene_plasmids/132105.addgene-full.gb" }, @@ -91723,7 +115574,10 @@ "plasmid_name": "pWS627", "sequence-type": "addgene-full", "addgene_id": "123064", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123064.addgene-full.gb" }, @@ -91732,7 +115586,6 @@ "plasmid_name": "pLenti Lifeact-mTagBFP2 PuroR", "sequence-type": "addgene-full", "addgene_id": "101893", - "references": [], "kit": null, "file": "data/addgene_plasmids/101893.addgene-full.gb" }, @@ -91741,7 +115594,10 @@ "plasmid_name": "pYPQ210", "sequence-type": "addgene-full", "addgene_id": "109329", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12982", + "https://www.ncbi.nlm.nih.gov/pubmed/29972722" + ], "kit": null, "file": "data/addgene_plasmids/109329.addgene-full.gb" }, @@ -91750,7 +115606,10 @@ "plasmid_name": "pT2-cryR;cldn5bP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90158", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90158.addgene-full.gb" }, @@ -91759,7 +115618,6 @@ "plasmid_name": "pAG416-GAL-TDP-43-M337V", "sequence-type": "addgene-full", "addgene_id": "181721", - "references": [], "kit": null, "file": "data/addgene_plasmids/181721.addgene-full.gb" }, @@ -91768,7 +115626,10 @@ "plasmid_name": "pAG414GPD-VuCYP722C(pYL1070)", "sequence-type": "addgene-full", "addgene_id": "178293", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178293.addgene-full.gb" }, @@ -91777,7 +115638,10 @@ "plasmid_name": "pEn-C1.1", "sequence-type": "depositor-full", "addgene_id": "61479", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12704", + "https://www.ncbi.nlm.nih.gov/pubmed/25327456" + ], "kit": null, "file": "data/addgene_plasmids/61479.depositor-full.gb" }, @@ -91786,7 +115650,10 @@ "plasmid_name": "pMDJ12 - pEXP[Peft-3 | mNeonGreen (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159799", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159799.addgene-full.gb" }, @@ -91795,7 +115662,10 @@ "plasmid_name": "pDONR223_ATF4_WT", "sequence-type": "addgene-full", "addgene_id": "82190", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82190.addgene-full.gb" }, @@ -91804,7 +115674,10 @@ "plasmid_name": "pBoPyV3-S22", "sequence-type": "depositor-full", "addgene_id": "62368", - "references": [], + "references": [ + "https://doi.org/10.1099/vir.0.000033", + "https://www.ncbi.nlm.nih.gov/pubmed/25568187" + ], "kit": null, "file": "data/addgene_plasmids/62368.depositor-full.gb" }, @@ -91813,7 +115686,10 @@ "plasmid_name": "pDEST-FRT/T0-Flag-PALB2", "sequence-type": "depositor-full", "addgene_id": "71114", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71114.depositor-full.gb" }, @@ -91822,7 +115698,10 @@ "plasmid_name": "pHAGE-MAP3K4", "sequence-type": "addgene-full", "addgene_id": "116759", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116759.addgene-full.gb" }, @@ -91831,7 +115710,6 @@ "plasmid_name": "R777-E032 Hs.CYTH2-nostop", "sequence-type": "depositor-full", "addgene_id": "70316", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -91843,7 +115721,10 @@ "plasmid_name": "pYPQ266B", "sequence-type": "addgene-full", "addgene_id": "149555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2020.100101", + "https://www.ncbi.nlm.nih.gov/pubmed/33898973" + ], "kit": null, "file": "data/addgene_plasmids/149555.addgene-full.gb" }, @@ -91852,7 +115733,10 @@ "plasmid_name": "pTW101", "sequence-type": "addgene-full", "addgene_id": "115944", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115944.addgene-full.gb" }, @@ -91861,7 +115745,10 @@ "plasmid_name": "pCAG/ATP10B(E210Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209247", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209247.addgene-full.gb" }, @@ -91870,7 +115757,10 @@ "plasmid_name": "pSC51", "sequence-type": "addgene-full", "addgene_id": "104825", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104825.addgene-full.gb" }, @@ -91879,7 +115769,6 @@ "plasmid_name": "IDG_GABRR1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161628", - "references": [], "kit": null, "file": "data/addgene_plasmids/161628.addgene-full.gb" }, @@ -91888,7 +115777,10 @@ "plasmid_name": "pGWB441", "sequence-type": "depositor-full", "addgene_id": "74827", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74827.depositor-full.gb" }, @@ -91897,7 +115789,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-eGFP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135263", - "references": [], "kit": null, "file": "data/addgene_plasmids/135263.addgene-full.gb" }, @@ -91906,7 +115797,10 @@ "plasmid_name": "pDONR223_PIK3R3_WT", "sequence-type": "addgene-full", "addgene_id": "82044", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82044.addgene-full.gb" }, @@ -91915,7 +115809,10 @@ "plasmid_name": "pDEST40-2XHA-Src-Y530EEI", "sequence-type": "addgene-full", "addgene_id": "140322", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140322.addgene-full.gb" }, @@ -91924,7 +115821,6 @@ "plasmid_name": "pAG426GAL-HCoV-NL63_PLP2", "sequence-type": "addgene-full", "addgene_id": "203502", - "references": [], "kit": null, "file": "data/addgene_plasmids/203502.addgene-full.gb" }, @@ -91933,7 +115829,10 @@ "plasmid_name": "pRU52", "sequence-type": "addgene-full", "addgene_id": "167678", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167678.addgene-full.gb" }, @@ -91942,7 +115841,10 @@ "plasmid_name": "pDONR223_LCE1B_p.S42F", "sequence-type": "addgene-full", "addgene_id": "81296", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -91954,7 +115856,10 @@ "plasmid_name": "pHAGE-KRAS-A146V", "sequence-type": "addgene-full", "addgene_id": "116422", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116422.addgene-full.gb" }, @@ -91963,7 +115868,10 @@ "plasmid_name": "pDONR223-ZNF692", "sequence-type": "addgene-full", "addgene_id": "88701", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88701.addgene-full.gb" }, @@ -91972,7 +115880,6 @@ "plasmid_name": "EV-D68 2A protease; 6xHis-GST-TEV, low expression levels", "sequence-type": "addgene-full", "addgene_id": "204804", - "references": [], "kit": null, "file": "data/addgene_plasmids/204804.addgene-full.gb" }, @@ -91981,7 +115888,10 @@ "plasmid_name": "Tol2-UAS-Dendra2", "sequence-type": "addgene-full", "addgene_id": "97145", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "file": "data/addgene_plasmids/97145.addgene-full.gb" }, @@ -91990,7 +115900,10 @@ "plasmid_name": "MAC_N_PSA1", "sequence-type": "addgene-full", "addgene_id": "111690", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111690.addgene-full.gb" }, @@ -91999,7 +115912,6 @@ "plasmid_name": "pENTR_Hu_BIRC5(WT)", "sequence-type": "addgene-full", "addgene_id": "136351", - "references": [], "kit": null, "file": "data/addgene_plasmids/136351.addgene-full.gb" }, @@ -92008,7 +115920,10 @@ "plasmid_name": "pBoPyV1-S22", "sequence-type": "depositor-full", "addgene_id": "62326", - "references": [], + "references": [ + "https://doi.org/10.1099/vir.0.000033", + "https://www.ncbi.nlm.nih.gov/pubmed/25568187" + ], "kit": null, "file": "data/addgene_plasmids/62326.depositor-full.gb" }, @@ -92017,7 +115932,10 @@ "plasmid_name": "pDL8", "sequence-type": "addgene-full", "addgene_id": "175904", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175904.addgene-full.gb" }, @@ -92026,7 +115944,10 @@ "plasmid_name": "pDONR221_SLC6A20", "sequence-type": "addgene-full", "addgene_id": "132243", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132243.addgene-full.gb" }, @@ -92035,7 +115956,10 @@ "plasmid_name": "pUASp-FMW-attB-AthHen1", "sequence-type": "addgene-full", "addgene_id": "104957", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4610", + "https://www.ncbi.nlm.nih.gov/pubmed/29481550" + ], "kit": null, "file": "data/addgene_plasmids/104957.addgene-full.gb" }, @@ -92044,7 +115968,10 @@ "plasmid_name": "pJRA101", "sequence-type": "addgene-full", "addgene_id": "209335", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209335.addgene-full.gb" }, @@ -92053,7 +115980,10 @@ "plasmid_name": "pENTR-R4R3-mEGFP-C", "sequence-type": "addgene-full", "addgene_id": "113749", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -92065,7 +115995,10 @@ "plasmid_name": "pDONR223_JAZF1_WT", "sequence-type": "addgene-full", "addgene_id": "82136", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82136.addgene-full.gb" }, @@ -92074,7 +116007,10 @@ "plasmid_name": "MAC_N_SOX10", "sequence-type": "addgene-full", "addgene_id": "167791", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167791.addgene-full.gb" }, @@ -92083,7 +116019,6 @@ "plasmid_name": "g5s pD42", "sequence-type": "addgene-full", "addgene_id": "117452", - "references": [], "kit": null, "file": "data/addgene_plasmids/117452.addgene-full.gb" }, @@ -92092,7 +116027,10 @@ "plasmid_name": "ABCG1_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176944", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176944.addgene-full.gb" }, @@ -92101,7 +116039,10 @@ "plasmid_name": "pENTR223-BXLF2", "sequence-type": "addgene-full", "addgene_id": "195830", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195830.addgene-full.gb" }, @@ -92110,7 +116051,10 @@ "plasmid_name": "pENTR223-BZLF2", "sequence-type": "addgene-full", "addgene_id": "195784", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195784.addgene-full.gb" }, @@ -92119,7 +116063,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-CALCOCO2", "sequence-type": "addgene-full", "addgene_id": "175759", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175759.addgene-full.gb" }, @@ -92128,7 +116075,6 @@ "plasmid_name": "R777-E242 Hs.RASGRF2-nostop", "sequence-type": "depositor-full", "addgene_id": "70526", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -92140,7 +116086,10 @@ "plasmid_name": "pAG424GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14295", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -92152,7 +116101,10 @@ "plasmid_name": "C512-E34: attB5r-iRFP670-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162947", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -92164,7 +116116,10 @@ "plasmid_name": "pInducer20_SLC38A2_N82A", "sequence-type": "addgene-full", "addgene_id": "156183", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0959", + "https://www.ncbi.nlm.nih.gov/pubmed/32341021" + ], "kit": null, "file": "data/addgene_plasmids/156183.addgene-full.gb" }, @@ -92173,7 +116128,6 @@ "plasmid_name": "TCF4 - D424N in pENTR", "sequence-type": "addgene-full", "addgene_id": "216571", - "references": [], "kit": null, "file": "data/addgene_plasmids/216571.addgene-full.gb" }, @@ -92182,7 +116136,10 @@ "plasmid_name": "pUC-DEST-cjSTELLA-mCerulean-PuroTK", "sequence-type": "addgene-full", "addgene_id": "141029", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141029.addgene-full.gb" }, @@ -92191,7 +116148,10 @@ "plasmid_name": "pDEST-Myc-FBW7 Delta WD40 (-2 to 7)", "sequence-type": "addgene-full", "addgene_id": "197454", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "file": "data/addgene_plasmids/197454.addgene-full.gb" }, @@ -92200,7 +116160,10 @@ "plasmid_name": "pT3-myr-AKT-HA", "sequence-type": "addgene-full", "addgene_id": "31789", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2010.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/21147110" + ], "kit": null, "file": "data/addgene_plasmids/31789.addgene-full.gb" }, @@ -92209,7 +116172,10 @@ "plasmid_name": "pDONR221_SLC2A14", "sequence-type": "addgene-full", "addgene_id": "132138", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132138.addgene-full.gb" }, @@ -92218,7 +116184,10 @@ "plasmid_name": "pWS788", "sequence-type": "addgene-full", "addgene_id": "123059", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123059.addgene-full.gb" }, @@ -92227,7 +116196,10 @@ "plasmid_name": "pCMB-PDESr", "sequence-type": "depositor-full", "addgene_id": "61207", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61207.depositor-full.gb" }, @@ -92236,7 +116208,10 @@ "plasmid_name": "pDONR221-NIPA2_STOP", "sequence-type": "addgene-full", "addgene_id": "161421", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161421.addgene-full.gb" }, @@ -92245,7 +116220,10 @@ "plasmid_name": "Flag-HA-ATXN3", "sequence-type": "addgene-full", "addgene_id": "22538", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22538.addgene-full.gb" }, @@ -92266,7 +116244,10 @@ "plasmid_name": "pLX311 MCL1", "sequence-type": "addgene-full", "addgene_id": "117729", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117729.addgene-full.gb" }, @@ -92275,7 +116256,10 @@ "plasmid_name": "pT2-cryR;sheP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90165", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90165.addgene-full.gb" }, @@ -92284,7 +116268,6 @@ "plasmid_name": "pAG416GAL10-NWV_3CL", "sequence-type": "addgene-full", "addgene_id": "203470", - "references": [], "kit": null, "file": "data/addgene_plasmids/203470.addgene-full.gb" }, @@ -92293,7 +116276,10 @@ "plasmid_name": "pMDJ21 - pEXP [Psmu-1 | eFlp recombinase (PATCs) | smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159810", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159810.addgene-full.gb" }, @@ -92302,7 +116288,10 @@ "plasmid_name": "800 pME-Bozozok", "sequence-type": "depositor-full", "addgene_id": "49008", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2013.08.028", + "https://www.ncbi.nlm.nih.gov/pubmed/24036310" + ], "kit": null, "file": "data/addgene_plasmids/49008.depositor-full.gb" }, @@ -92311,7 +116300,10 @@ "plasmid_name": "pMuLE_ENTR_TOP-iRFP_L5-L4", "sequence-type": "addgene-full", "addgene_id": "113866", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "file": "data/addgene_plasmids/113866.addgene-full.gb" }, @@ -92320,7 +116312,10 @@ "plasmid_name": "pHAGE-PIK3CB-A1048V", "sequence-type": "addgene-full", "addgene_id": "116550", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116550.addgene-full.gb" }, @@ -92329,7 +116324,10 @@ "plasmid_name": "pDONR223-PRKAR1A", "sequence-type": "addgene-full", "addgene_id": "23741", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -92341,7 +116339,10 @@ "plasmid_name": "pLenti_CMV_Puro_SFB_GNB1L_WD 4 deletion", "sequence-type": "addgene-full", "addgene_id": "224385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.07.004", + "https://www.ncbi.nlm.nih.gov/pubmed/37541219" + ], "kit": null, "file": "data/addgene_plasmids/224385.addgene-full.gb" }, @@ -92350,7 +116351,10 @@ "plasmid_name": "pCM1.53", "sequence-type": "depositor-full", "addgene_id": "17250", - "references": [], + "references": [ + "https://doi.org/10.1895/wormbook.1.148.1", + "https://www.ncbi.nlm.nih.gov/pubmed/20169625" + ], "kit": null, "file": "data/addgene_plasmids/17250.depositor-full.gb" }, @@ -92359,7 +116363,10 @@ "plasmid_name": "pHAGE-MRPS31", "sequence-type": "addgene-full", "addgene_id": "116764", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116764.addgene-full.gb" }, @@ -92368,7 +116375,10 @@ "plasmid_name": "pGMCtN-TSC10M1-sspB", "sequence-type": "depositor-full", "addgene_id": "49521", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "file": "data/addgene_plasmids/49521.depositor-full.gb" }, @@ -92377,7 +116387,10 @@ "plasmid_name": "pGWB501NL3F10H", "sequence-type": "addgene-full", "addgene_id": "141286", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0454-4", + "https://www.ncbi.nlm.nih.gov/pubmed/31316580" + ], "kit": null, "file": "data/addgene_plasmids/141286.addgene-full.gb" }, @@ -92386,7 +116399,6 @@ "plasmid_name": "R777-E284 Hs.ROCK1-nostop", "sequence-type": "depositor-full", "addgene_id": "70568", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -92398,7 +116410,10 @@ "plasmid_name": "pHAGE-PIK3CA-E545G", "sequence-type": "addgene-full", "addgene_id": "116484", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116484.addgene-full.gb" }, @@ -92407,7 +116422,10 @@ "plasmid_name": "PE_1: Para_lac_bD", "sequence-type": "addgene-full", "addgene_id": "113606", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113606.addgene-full.gb" }, @@ -92416,7 +116434,10 @@ "plasmid_name": "pSC44", "sequence-type": "addgene-full", "addgene_id": "104818", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104818.addgene-full.gb" }, @@ -92425,7 +116446,6 @@ "plasmid_name": "IDG_FAM26E_OE_1", "sequence-type": "addgene-full", "addgene_id": "161615", - "references": [], "kit": null, "file": "data/addgene_plasmids/161615.addgene-full.gb" }, @@ -92434,7 +116454,10 @@ "plasmid_name": "pCR8/GW_TOPO_Cdk12_Untagged", "sequence-type": "addgene-full", "addgene_id": "127176", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0758-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30487607" + ], "kit": null, "file": "data/addgene_plasmids/127176.addgene-full.gb" }, @@ -92443,7 +116466,10 @@ "plasmid_name": "pLenti-Zyxin-F (aa373-564)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187698", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187698.addgene-full.gb" }, @@ -92452,7 +116478,10 @@ "plasmid_name": "pXL-CAG-mBirA272-NRX3b D137A", "sequence-type": "depositor-full", "addgene_id": "43922", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0052823", + "https://www.ncbi.nlm.nih.gov/pubmed/23457442" + ], "kit": null, "file": "data/addgene_plasmids/43922.depositor-full.gb" }, @@ -92461,7 +116490,10 @@ "plasmid_name": "pYPQ230-E795L", "sequence-type": "addgene-full", "addgene_id": "176890", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2022.780238", + "https://www.ncbi.nlm.nih.gov/pubmed/35174354" + ], "kit": null, "file": "data/addgene_plasmids/176890.addgene-full.gb" }, @@ -92470,7 +116502,9 @@ "plasmid_name": "p3E-FRB(PLF)-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82597", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82597.depositor-full.gb" }, @@ -92479,7 +116513,10 @@ "plasmid_name": "pRL8", "sequence-type": "depositor-full", "addgene_id": "24980", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1454", + "https://www.ncbi.nlm.nih.gov/pubmed/20418868" + ], "kit": null, "file": "data/addgene_plasmids/24980.depositor-full.gb" }, @@ -92488,7 +116525,10 @@ "plasmid_name": "PE_22: Plas_tet_eG::sfYFP", "sequence-type": "addgene-full", "addgene_id": "104883", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104883.addgene-full.gb" }, @@ -92497,7 +116537,10 @@ "plasmid_name": "pWZL Neo Myr Flag CDK2", "sequence-type": "addgene-full", "addgene_id": "20447", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20447.addgene-full.gb" }, @@ -92506,7 +116549,10 @@ "plasmid_name": "pDONR-IAA7_no stop", "sequence-type": "depositor-full", "addgene_id": "83872", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83872.depositor-full.gb" }, @@ -92515,7 +116561,10 @@ "plasmid_name": "pDEST-CMV GFP-LC3B G120", "sequence-type": "addgene-full", "addgene_id": "123116", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123116.addgene-full.gb" }, @@ -92524,7 +116573,10 @@ "plasmid_name": "pDONR221_SLC30A5", "sequence-type": "addgene-full", "addgene_id": "132077", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132077.addgene-full.gb" }, @@ -92533,7 +116585,10 @@ "plasmid_name": "pZA14", "sequence-type": "addgene-full", "addgene_id": "158492", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158492.addgene-full.gb" }, @@ -92542,7 +116597,10 @@ "plasmid_name": "MEN2B-V5", "sequence-type": "addgene-full", "addgene_id": "139630", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139630.addgene-full.gb" }, @@ -92551,7 +116609,10 @@ "plasmid_name": "C122-E11: eGFP", "sequence-type": "addgene-full", "addgene_id": "162893", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -92563,7 +116624,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term WRAP53", "sequence-type": "addgene-full", "addgene_id": "187578", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187578.addgene-full.gb" }, @@ -92572,7 +116636,10 @@ "plasmid_name": "pKG-GW1-hCIT", "sequence-type": "addgene-full", "addgene_id": "203166", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "file": "data/addgene_plasmids/203166.addgene-full.gb" }, @@ -92581,7 +116648,10 @@ "plasmid_name": "pAB(EXPR-PYL-DNMT1-NEO)", "sequence-type": "addgene-full", "addgene_id": "114396", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114396.addgene-full.gb" }, @@ -92590,7 +116660,10 @@ "plasmid_name": "pLEX307 GFP-Kif26b-C", "sequence-type": "addgene-full", "addgene_id": "118483", - "references": [], + "references": [ + "https://doi.org/10.3390/genes9040196", + "https://www.ncbi.nlm.nih.gov/pubmed/29621187" + ], "kit": null, "file": "data/addgene_plasmids/118483.addgene-full.gb" }, @@ -92599,7 +116672,10 @@ "plasmid_name": "pENT-L1-Kozak-NLSlacZ-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186358", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186358.addgene-full.gb" }, @@ -92608,7 +116684,6 @@ "plasmid_name": "pCW57.1_V5_BirA*_FLAG_Nt", "sequence-type": "addgene-full", "addgene_id": "194070", - "references": [], "kit": null, "file": "data/addgene_plasmids/194070.addgene-full.gb" }, @@ -92617,7 +116692,10 @@ "plasmid_name": "TFORF3416", "sequence-type": "addgene-full", "addgene_id": "144892", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144892.addgene-full.gb" }, @@ -92626,7 +116704,10 @@ "plasmid_name": "TFORF3250", "sequence-type": "addgene-full", "addgene_id": "144726", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144726.addgene-full.gb" }, @@ -92635,7 +116716,10 @@ "plasmid_name": "pDON223 NSP5 K90R", "sequence-type": "addgene-full", "addgene_id": "180073", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180073.addgene-full.gb" }, @@ -92644,7 +116728,10 @@ "plasmid_name": "actc1b-mKate2-rab15", "sequence-type": "addgene-full", "addgene_id": "109602", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109602.addgene-full.gb" }, @@ -92653,7 +116740,10 @@ "plasmid_name": "pDONR223_WBSCR17_p.A398V", "sequence-type": "addgene-full", "addgene_id": "81512", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -92665,7 +116755,10 @@ "plasmid_name": "pDONR223 LC3B Q116P G120", "sequence-type": "addgene-full", "addgene_id": "129291", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129291.addgene-full.gb" }, @@ -92674,7 +116767,10 @@ "plasmid_name": "pDONR221-SLC25A46_STOP", "sequence-type": "addgene-full", "addgene_id": "161137", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161137.addgene-full.gb" }, @@ -92683,7 +116779,10 @@ "plasmid_name": "TFORF3546", "sequence-type": "depositor-full", "addgene_id": "145022", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145022.depositor-full.gb" }, @@ -92692,7 +116791,10 @@ "plasmid_name": "pDONR223_STAG2_p.R252Q", "sequence-type": "addgene-full", "addgene_id": "81589", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -92704,7 +116806,10 @@ "plasmid_name": "pEGFP\u2010RNASEH2A", "sequence-type": "addgene-full", "addgene_id": "108700", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkq980", + "https://www.ncbi.nlm.nih.gov/pubmed/21245041" + ], "kit": null, "file": "data/addgene_plasmids/108700.addgene-full.gb" }, @@ -92713,7 +116818,10 @@ "plasmid_name": "pCMU-TGNVHAr", "sequence-type": "depositor-full", "addgene_id": "61178", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61178.depositor-full.gb" }, @@ -92722,7 +116830,10 @@ "plasmid_name": "TFORF3333", "sequence-type": "addgene-full", "addgene_id": "144809", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144809.addgene-full.gb" }, @@ -92731,7 +116842,10 @@ "plasmid_name": "PLX306 iCre tetO tomato rtTA", "sequence-type": "addgene-full", "addgene_id": "158050", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aax0902", + "https://www.ncbi.nlm.nih.gov/pubmed/32165588" + ], "kit": null, "file": "data/addgene_plasmids/158050.addgene-full.gb" }, @@ -92740,7 +116854,10 @@ "plasmid_name": "pDONR221_SLC17A6", "sequence-type": "addgene-full", "addgene_id": "131948", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131948.addgene-full.gb" }, @@ -92749,7 +116866,10 @@ "plasmid_name": "p3E-rab38a", "sequence-type": "addgene-full", "addgene_id": "109699", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109699.addgene-full.gb" }, @@ -92758,7 +116878,10 @@ "plasmid_name": "pcDNA3.2/NS5-Af-mut", "sequence-type": "addgene-full", "addgene_id": "120829", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120829.addgene-full.gb" }, @@ -92767,7 +116890,10 @@ "plasmid_name": "pCM1.108", "sequence-type": "depositor-full", "addgene_id": "21382", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21382.depositor-full.gb" }, @@ -92776,7 +116902,10 @@ "plasmid_name": "p3E-RhoAb", "sequence-type": "addgene-full", "addgene_id": "109579", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109579.addgene-full.gb" }, @@ -92785,7 +116914,10 @@ "plasmid_name": "pAG423GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14317", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -92797,7 +116929,6 @@ "plasmid_name": "pCLX-UBI-VenusN", "sequence-type": "depositor-full", "addgene_id": "27247", - "references": [], "kit": null, "file": "data/addgene_plasmids/27247.depositor-full.gb" }, @@ -92806,7 +116937,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.C121S", "sequence-type": "addgene-full", "addgene_id": "81669", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -92818,7 +116952,10 @@ "plasmid_name": "pLenti CMV MCL1 Puro", "sequence-type": "addgene-full", "addgene_id": "140746", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.107845", + "https://www.ncbi.nlm.nih.gov/pubmed/32640215" + ], "kit": null, "file": "data/addgene_plasmids/140746.addgene-full.gb" }, @@ -92827,7 +116964,10 @@ "plasmid_name": "plenti-CAG-IKZF3-FLAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "107388", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107388.addgene-full.gb" }, @@ -92836,7 +116976,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-DYRK4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158184", - "references": [], "kit": null, "file": "data/addgene_plasmids/158184.addgene-full.gb" }, @@ -92845,7 +116984,10 @@ "plasmid_name": "TFORF3193", "sequence-type": "addgene-full", "addgene_id": "144669", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144669.addgene-full.gb" }, @@ -92854,7 +116996,10 @@ "plasmid_name": "pDONR221-SLC17A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161078", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161078.addgene-full.gb" }, @@ -92863,7 +117008,10 @@ "plasmid_name": "JN202: pMVP/SB/Blast-DEST", "sequence-type": "addgene-full", "addgene_id": "121864", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121864.addgene-full.gb" }, @@ -92872,7 +117020,10 @@ "plasmid_name": "Kras (G12V)-pcw107", "sequence-type": "addgene-full", "addgene_id": "64602", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/64602.addgene-full.gb" }, @@ -92881,7 +117032,6 @@ "plasmid_name": "R777-E334 Hs.SPRY4-nostop", "sequence-type": "depositor-full", "addgene_id": "70617", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -92893,7 +117043,10 @@ "plasmid_name": "pDONR221-SLC7A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161398", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161398.addgene-full.gb" }, @@ -92902,7 +117055,10 @@ "plasmid_name": "pDONR223_ILKAP_WT", "sequence-type": "addgene-full", "addgene_id": "81809", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -92914,7 +117070,6 @@ "plasmid_name": "R777-E317 Hs.SOS1", "sequence-type": "addgene-full", "addgene_id": "70601", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -92926,7 +117081,10 @@ "plasmid_name": "pMOS019: ClopHensorN chloride sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163048", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163048.addgene-full.gb" }, @@ -92935,7 +117093,10 @@ "plasmid_name": "TFORF3113", "sequence-type": "addgene-full", "addgene_id": "144589", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144589.addgene-full.gb" }, @@ -92944,7 +117105,10 @@ "plasmid_name": "pHAGE-ALK-G875R", "sequence-type": "addgene-full", "addgene_id": "116109", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116109.addgene-full.gb" }, @@ -92953,7 +117117,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP2_nostop", "sequence-type": "addgene-full", "addgene_id": "149305", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149305.addgene-full.gb" }, @@ -92962,7 +117129,6 @@ "plasmid_name": "R777-E086 Hs.FGFR2-nostop", "sequence-type": "depositor-full", "addgene_id": "70370", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -92974,7 +117140,10 @@ "plasmid_name": "TFORF3036", "sequence-type": "addgene-full", "addgene_id": "144512", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144512.addgene-full.gb" }, @@ -92983,7 +117152,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp14", "sequence-type": "addgene-full", "addgene_id": "168920", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168920.addgene-full.gb" }, @@ -92992,7 +117164,10 @@ "plasmid_name": "pHAGE-BRAF-Q530K", "sequence-type": "addgene-full", "addgene_id": "116192", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116192.addgene-full.gb" }, @@ -93001,7 +117176,10 @@ "plasmid_name": "pDONR221-SLC30A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161303", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161303.addgene-full.gb" }, @@ -93010,7 +117188,10 @@ "plasmid_name": "pDONR223_ERBB2_WT", "sequence-type": "addgene-full", "addgene_id": "81892", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -93022,7 +117203,10 @@ "plasmid_name": "pSGE_764_4xUAS_DOS_hkCP", "sequence-type": "depositor-full", "addgene_id": "71172", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71172.depositor-full.gb" }, @@ -93031,7 +117215,10 @@ "plasmid_name": "pDONR223_IDH1_p.R132C", "sequence-type": "addgene-full", "addgene_id": "81726", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -93043,7 +117230,10 @@ "plasmid_name": "pENTR L1-5XQUAS-R5", "sequence-type": "depositor-full", "addgene_id": "32303", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32303.depositor-full.gb" }, @@ -93052,7 +117242,10 @@ "plasmid_name": "pMTP130 (pTA106_TnsABC(Tn6900))", "sequence-type": "addgene-full", "addgene_id": "164261", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.11.005", + "https://www.ncbi.nlm.nih.gov/pubmed/33271061" + ], "kit": null, "file": "data/addgene_plasmids/164261.addgene-full.gb" }, @@ -93061,7 +117254,10 @@ "plasmid_name": "pDONR221-eGFP_KDEL", "sequence-type": "addgene-full", "addgene_id": "221411", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221411.addgene-full.gb" }, @@ -93070,7 +117266,10 @@ "plasmid_name": "pAG414GAL-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14359", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -93082,7 +117281,10 @@ "plasmid_name": "pBABEpuro-gateway", "sequence-type": "addgene-full", "addgene_id": "51070", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1203201109", + "https://www.ncbi.nlm.nih.gov/pubmed/22908275" + ], "kit": null, "file": "data/addgene_plasmids/51070.addgene-full.gb" }, @@ -93091,7 +117293,10 @@ "plasmid_name": "PLRG1", "sequence-type": "addgene-full", "addgene_id": "155827", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155827.addgene-full.gb" }, @@ -93100,7 +117305,10 @@ "plasmid_name": "pHAGE-EGFR-L861Q", "sequence-type": "addgene-full", "addgene_id": "116272", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116272.addgene-full.gb" }, @@ -93109,7 +117317,10 @@ "plasmid_name": "TFORF3470", "sequence-type": "addgene-full", "addgene_id": "144946", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144946.addgene-full.gb" }, @@ -93118,7 +117329,10 @@ "plasmid_name": "NSUN2", "sequence-type": "addgene-full", "addgene_id": "155793", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155793.addgene-full.gb" }, @@ -93127,7 +117341,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP4", "sequence-type": "addgene-full", "addgene_id": "154403", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154403.addgene-full.gb" }, @@ -93136,7 +117353,10 @@ "plasmid_name": "pENT-L3-pSnail-L5", "sequence-type": "addgene-full", "addgene_id": "186365", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186365.addgene-full.gb" }, @@ -93145,7 +117365,10 @@ "plasmid_name": "V5-W279A-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192086", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/192086.addgene-full.gb" }, @@ -93154,7 +117377,10 @@ "plasmid_name": "pLenti CMV Hygro DHFR.cHSF1", "sequence-type": "addgene-full", "addgene_id": "134738", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.28652", + "https://www.ncbi.nlm.nih.gov/pubmed/28949290" + ], "kit": null, "file": "data/addgene_plasmids/134738.addgene-full.gb" }, @@ -93163,7 +117389,10 @@ "plasmid_name": "MAC_N_CCDC22", "sequence-type": "addgene-full", "addgene_id": "209685", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209685.addgene-full.gb" }, @@ -93172,7 +117401,6 @@ "plasmid_name": "pAM-35s-CBL6-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102398", - "references": [], "kit": null, "file": "data/addgene_plasmids/102398.addgene-full.gb" }, @@ -93181,7 +117409,10 @@ "plasmid_name": "pENTR-ZmIAA28", "sequence-type": "addgene-full", "addgene_id": "188440", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188440.addgene-full.gb" }, @@ -93190,7 +117421,10 @@ "plasmid_name": "pLX304_zeo_empty", "sequence-type": "addgene-full", "addgene_id": "160093", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160093.addgene-full.gb" }, @@ -93199,7 +117433,10 @@ "plasmid_name": "pDONR223_DOK1_p.S460I", "sequence-type": "addgene-full", "addgene_id": "82766", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82766.addgene-full.gb" }, @@ -93208,7 +117445,10 @@ "plasmid_name": "tetO-Myocd", "sequence-type": "addgene-full", "addgene_id": "46033", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "file": "data/addgene_plasmids/46033.addgene-full.gb" }, @@ -93217,7 +117457,9 @@ "plasmid_name": "pGem-nHyPer:cAPX", "sequence-type": "addgene-full", "addgene_id": "84736", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "file": "data/addgene_plasmids/84736.addgene-full.gb" }, @@ -93226,7 +117468,10 @@ "plasmid_name": "pDONR221-SLC23A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161191", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161191.addgene-full.gb" }, @@ -93235,7 +117480,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.G367V", "sequence-type": "addgene-full", "addgene_id": "82849", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82849.addgene-full.gb" }, @@ -93244,7 +117492,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hSFRP1-VF", "sequence-type": "addgene-full", "addgene_id": "189542", - "references": [], "kit": null, "file": "data/addgene_plasmids/189542.addgene-full.gb" }, @@ -93253,7 +117500,10 @@ "plasmid_name": "pEBTet-SNAP-Sfi1", "sequence-type": "addgene-full", "addgene_id": "136793", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136793.addgene-full.gb" }, @@ -93262,7 +117512,10 @@ "plasmid_name": "pEBTet-SNAP-Cep78", "sequence-type": "addgene-full", "addgene_id": "136827", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136827.addgene-full.gb" }, @@ -93271,7 +117524,10 @@ "plasmid_name": "p5E-CMVSP6", "sequence-type": "addgene-full", "addgene_id": "138356", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138356.addgene-full.gb" }, @@ -93280,7 +117536,10 @@ "plasmid_name": "pFRT/TO/FLAGHA-SCAF8", "sequence-type": "addgene-full", "addgene_id": "122470", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "file": "data/addgene_plasmids/122470.addgene-full.gb" }, @@ -93289,7 +117548,10 @@ "plasmid_name": "pDONR221_SLC22A12", "sequence-type": "addgene-full", "addgene_id": "131975", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131975.addgene-full.gb" }, @@ -93298,7 +117560,10 @@ "plasmid_name": "TFORF3304", "sequence-type": "addgene-full", "addgene_id": "144780", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144780.addgene-full.gb" }, @@ -93307,7 +117572,10 @@ "plasmid_name": "TFORF3358", "sequence-type": "addgene-full", "addgene_id": "144834", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144834.addgene-full.gb" }, @@ -93316,7 +117584,10 @@ "plasmid_name": "pDONR223-ZNF473", "sequence-type": "addgene-full", "addgene_id": "88023", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88023.addgene-full.gb" }, @@ -93325,7 +117596,10 @@ "plasmid_name": "pGGEV_7'_Linker", "sequence-type": "depositor-full", "addgene_id": "49293", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -93337,7 +117611,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168852", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168852.addgene-full.gb" }, @@ -93346,7 +117623,10 @@ "plasmid_name": "p3E-DysF", "sequence-type": "addgene-full", "addgene_id": "109544", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109544.addgene-full.gb" }, @@ -93355,7 +117635,10 @@ "plasmid_name": "TFORF2984", "sequence-type": "addgene-full", "addgene_id": "144460", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144460.addgene-full.gb" }, @@ -93364,7 +117647,9 @@ "plasmid_name": "pMpGWB429", "sequence-type": "depositor-full", "addgene_id": "68694", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68694.depositor-full.gb" }, @@ -93373,7 +117658,6 @@ "plasmid_name": "p667-UBC-STKLD1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189916", - "references": [], "kit": null, "file": "data/addgene_plasmids/189916.addgene-full.gb" }, @@ -93382,7 +117666,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12S", "sequence-type": "addgene-full", "addgene_id": "81654", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -93394,7 +117681,6 @@ "plasmid_name": "R777-E256 Hs.RASSF2-nostop", "sequence-type": "depositor-full", "addgene_id": "70540", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -93406,7 +117692,10 @@ "plasmid_name": "pDONR221-SLC39A14_STOP", "sequence-type": "addgene-full", "addgene_id": "161271", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161271.addgene-full.gb" }, @@ -93415,7 +117704,10 @@ "plasmid_name": "TFORF3178", "sequence-type": "addgene-full", "addgene_id": "144654", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144654.addgene-full.gb" }, @@ -93424,7 +117716,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp7", "sequence-type": "depositor-full", "addgene_id": "168849", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168849.depositor-full.gb" }, @@ -93433,7 +117728,10 @@ "plasmid_name": "pDONR221-SLC2A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161045", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161045.addgene-full.gb" }, @@ -93442,7 +117740,10 @@ "plasmid_name": "KK402: pMVP/Zeo-DEST", "sequence-type": "addgene-full", "addgene_id": "121859", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121859.addgene-full.gb" }, @@ -93451,7 +117752,10 @@ "plasmid_name": "pDONR223_TRAF3_p.D463N", "sequence-type": "addgene-full", "addgene_id": "81460", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -93463,7 +117767,10 @@ "plasmid_name": "pDONR223_GLIPR1_WT", "sequence-type": "addgene-full", "addgene_id": "81780", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -93487,7 +117794,10 @@ "plasmid_name": "pDONR223_SGK1_WT", "sequence-type": "addgene-full", "addgene_id": "81834", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -93499,7 +117809,10 @@ "plasmid_name": "pHAGE-BRAF-A762V", "sequence-type": "addgene-full", "addgene_id": "116134", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116134.addgene-full.gb" }, @@ -93508,7 +117821,10 @@ "plasmid_name": "pAC90-pmax-DEST", "sequence-type": "depositor-full", "addgene_id": "48222", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/48222.depositor-full.gb" }, @@ -93517,7 +117833,10 @@ "plasmid_name": "pInducer10-UBC9-sh1", "sequence-type": "addgene-full", "addgene_id": "168986", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "file": "data/addgene_plasmids/168986.addgene-full.gb" }, @@ -93526,7 +117845,10 @@ "plasmid_name": "actc1b-mKate2-GPI-pA", "sequence-type": "addgene-full", "addgene_id": "109490", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109490.addgene-full.gb" }, @@ -93535,7 +117857,10 @@ "plasmid_name": "pMOS016E: Entry vector for: roGFP2-Orp1 H2O2 oxidation sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163075", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163075.addgene-full.gb" }, @@ -93544,7 +117869,6 @@ "plasmid_name": "R777-E010 Hs.ARAF-nostop", "sequence-type": "depositor-full", "addgene_id": "70294", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -93556,7 +117880,10 @@ "plasmid_name": "pDEST17-cDAXX-0SB", "sequence-type": "addgene-full", "addgene_id": "169730", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169730.addgene-full.gb" }, @@ -93565,7 +117892,10 @@ "plasmid_name": "pDONR223_EGFR_p.L858R", "sequence-type": "addgene-full", "addgene_id": "82906", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82906.addgene-full.gb" }, @@ -93574,7 +117904,10 @@ "plasmid_name": "LA201: pMVP (L3-L2) P2A-eCFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121776", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121776.addgene-full.gb" }, @@ -93583,7 +117916,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP7_stop", "sequence-type": "addgene-full", "addgene_id": "168549", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168549.addgene-full.gb" }, @@ -93592,7 +117928,10 @@ "plasmid_name": "pAFMW-Nbr[R272A]", "sequence-type": "addgene-full", "addgene_id": "188594", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188594.addgene-full.gb" }, @@ -93601,7 +117940,10 @@ "plasmid_name": "pSAM2_mCherry_Tbx20", "sequence-type": "addgene-full", "addgene_id": "72697", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72697.addgene-full.gb" }, @@ -93610,7 +117952,10 @@ "plasmid_name": "pHAGE-PIK3CA-E103_G106delinsD", "sequence-type": "addgene-full", "addgene_id": "116465", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116465.addgene-full.gb" }, @@ -93619,7 +117964,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP14", "sequence-type": "addgene-full", "addgene_id": "141267", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141267.addgene-full.gb" }, @@ -93628,7 +117976,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) FITM2", "sequence-type": "addgene-full", "addgene_id": "107504", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107504.addgene-full.gb" }, @@ -93637,7 +117988,10 @@ "plasmid_name": "p5E-Runx1+23", "sequence-type": "addgene-full", "addgene_id": "69602", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.12.032", + "https://www.ncbi.nlm.nih.gov/pubmed/25594182" + ], "kit": null, "file": "data/addgene_plasmids/69602.addgene-full.gb" }, @@ -93646,7 +118000,10 @@ "plasmid_name": "pDONR223_ATF6_WT", "sequence-type": "addgene-full", "addgene_id": "82098", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82098.addgene-full.gb" }, @@ -93655,7 +118012,10 @@ "plasmid_name": "R979-X58-008: Hs.KRAS4b(1-188)", "sequence-type": "addgene-full", "addgene_id": "159691", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-019-46846-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31324887" + ], "kit": null, "file": "data/addgene_plasmids/159691.addgene-full.gb" }, @@ -93664,7 +118024,10 @@ "plasmid_name": "pDONR221-SLC16A14_STOP", "sequence-type": "depositor-full", "addgene_id": "161092", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161092.depositor-full.gb" }, @@ -93673,7 +118036,10 @@ "plasmid_name": "ath5:H2B-RFP", "sequence-type": "addgene-full", "addgene_id": "105960", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105960.addgene-full.gb" }, @@ -93682,7 +118048,10 @@ "plasmid_name": "pAM PAT-ProTRY GW", "sequence-type": "depositor-full", "addgene_id": "79755", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094698", + "https://www.ncbi.nlm.nih.gov/pubmed/23900543" + ], "kit": null, "file": "data/addgene_plasmids/79755.depositor-full.gb" }, @@ -93691,7 +118060,10 @@ "plasmid_name": "EGFP-Mm_Plk5(300-595) PBD domain", "sequence-type": "addgene-full", "addgene_id": "136316", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.00607-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21245385" + ], "kit": null, "file": "data/addgene_plasmids/136316.addgene-full.gb" }, @@ -93700,7 +118072,10 @@ "plasmid_name": "R701-X22-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) G13D", "sequence-type": "addgene-full", "addgene_id": "159571", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159571.addgene-full.gb" }, @@ -93709,7 +118084,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST LIN28A", "sequence-type": "depositor-full", "addgene_id": "43797", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.036491.112", + "https://www.ncbi.nlm.nih.gov/pubmed/23481595" + ], "kit": null, "file": "data/addgene_plasmids/43797.depositor-full.gb" }, @@ -93718,7 +118096,10 @@ "plasmid_name": "pAG423GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14174", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -93730,7 +118111,10 @@ "plasmid_name": "pHAGE-PHF21A__CAMK1D", "sequence-type": "addgene-full", "addgene_id": "116831", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116831.addgene-full.gb" }, @@ -93739,7 +118123,10 @@ "plasmid_name": "pHAGE-RAF1", "sequence-type": "addgene-full", "addgene_id": "116785", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116785.addgene-full.gb" }, @@ -93748,7 +118135,10 @@ "plasmid_name": "pJH203_pE12_hyCal9-mCherry", "sequence-type": "addgene-full", "addgene_id": "160416", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160416.addgene-full.gb" }, @@ -93757,7 +118147,10 @@ "plasmid_name": "pDONR221_SLC35G6", "sequence-type": "addgene-full", "addgene_id": "132096", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132096.addgene-full.gb" }, @@ -93766,7 +118159,6 @@ "plasmid_name": "pLEX307-TMPRSS4-blast", "sequence-type": "addgene-full", "addgene_id": "158473", - "references": [], "kit": null, "file": "data/addgene_plasmids/158473.addgene-full.gb" }, @@ -93775,7 +118167,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-pFOGc::venus-RfA", "sequence-type": "addgene-full", "addgene_id": "186400", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186400.addgene-full.gb" }, @@ -93784,7 +118179,10 @@ "plasmid_name": "pAG423GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14413", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -93796,7 +118194,10 @@ "plasmid_name": "EasyFusion T2A-H2B-GFP", "sequence-type": "addgene-full", "addgene_id": "112851", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt.4166", + "https://www.ncbi.nlm.nih.gov/pubmed/29889212" + ], "kit": null, "file": "data/addgene_plasmids/112851.addgene-full.gb" }, @@ -93805,7 +118206,10 @@ "plasmid_name": "Lyn11-BirA*-HA", "sequence-type": "addgene-full", "addgene_id": "214474", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E23-06-0255", + "https://www.ncbi.nlm.nih.gov/pubmed/38117590" + ], "kit": null, "file": "data/addgene_plasmids/214474.addgene-full.gb" }, @@ -93814,7 +118218,6 @@ "plasmid_name": "pcDNA-SUN2 mApple", "sequence-type": "addgene-full", "addgene_id": "187679", - "references": [], "kit": null, "file": "data/addgene_plasmids/187679.addgene-full.gb" }, @@ -93823,7 +118226,10 @@ "plasmid_name": "pDONR223_CD70_WT", "sequence-type": "addgene-full", "addgene_id": "82003", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -93835,7 +118241,10 @@ "plasmid_name": "p414GPD-3xFLAG-Nop4 WT", "sequence-type": "addgene-full", "addgene_id": "169261", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2017777118", + "https://www.ncbi.nlm.nih.gov/pubmed/33941690" + ], "kit": null, "file": "data/addgene_plasmids/169261.addgene-full.gb" }, @@ -93844,7 +118253,10 @@ "plasmid_name": "pAG423GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14389", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -93856,7 +118268,10 @@ "plasmid_name": "pAG414GPD-OsCYP711A3(pYL761)", "sequence-type": "addgene-full", "addgene_id": "178300", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178300.addgene-full.gb" }, @@ -93865,7 +118280,6 @@ "plasmid_name": "pSMPUW_6.14_M4_Ef1a-HA-gateway-SV40-Zeo", "sequence-type": "addgene-full", "addgene_id": "128450", - "references": [], "kit": null, "file": "data/addgene_plasmids/128450.addgene-full.gb" }, @@ -93874,7 +118288,10 @@ "plasmid_name": "pEN_TT 3xFLAG-TWIST2", "sequence-type": "addgene-full", "addgene_id": "197935", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.277559.122", + "https://www.ncbi.nlm.nih.gov/pubmed/36810156" + ], "kit": null, "file": "data/addgene_plasmids/197935.addgene-full.gb" }, @@ -93883,7 +118300,10 @@ "plasmid_name": "Flag-HA-COPS6", "sequence-type": "addgene-full", "addgene_id": "22542", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22542.addgene-full.gb" }, @@ -93892,7 +118312,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0489-luc2", "sequence-type": "addgene-full", "addgene_id": "214640", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214640.addgene-full.gb" }, @@ -93901,7 +118324,10 @@ "plasmid_name": "pDONR223_TGFBR1_WT", "sequence-type": "addgene-full", "addgene_id": "82237", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82237.addgene-full.gb" }, @@ -93910,7 +118336,10 @@ "plasmid_name": "p35ST", "sequence-type": "depositor-full", "addgene_id": "51514", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51514.depositor-full.gb" }, @@ -93919,7 +118348,10 @@ "plasmid_name": "pcDNA3.1 PA-mCit-GW", "sequence-type": "addgene-full", "addgene_id": "113448", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113448.addgene-full.gb" }, @@ -93928,7 +118360,10 @@ "plasmid_name": "pDONR221_SLC38A3", "sequence-type": "addgene-full", "addgene_id": "132142", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132142.addgene-full.gb" }, @@ -93937,7 +118372,6 @@ "plasmid_name": "EEF1A2 - R382H in pENTR", "sequence-type": "addgene-full", "addgene_id": "216590", - "references": [], "kit": null, "file": "data/addgene_plasmids/216590.addgene-full.gb" }, @@ -93946,7 +118380,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(L301R/V303R)-IRES-neo", "sequence-type": "addgene-full", "addgene_id": "128664", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128664.addgene-full.gb" }, @@ -93955,7 +118392,10 @@ "plasmid_name": "pLD-puro-Cc-TARDBP-G287A_VA", "sequence-type": "addgene-full", "addgene_id": "141328", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "file": "data/addgene_plasmids/141328.addgene-full.gb" }, @@ -93964,7 +118404,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-EDF1", "sequence-type": "depositor-full", "addgene_id": "38079", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38079.depositor-full.gb" }, @@ -93973,7 +118416,10 @@ "plasmid_name": "pdestMB14_sur5p-dCas9-VP64", "sequence-type": "addgene-full", "addgene_id": "177788", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2022.102085", + "https://www.ncbi.nlm.nih.gov/pubmed/35636511" + ], "kit": null, "file": "data/addgene_plasmids/177788.addgene-full.gb" }, @@ -93982,7 +118428,10 @@ "plasmid_name": "pDONR223_HRAS_p.A11D", "sequence-type": "addgene-full", "addgene_id": "81305", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -93994,7 +118443,10 @@ "plasmid_name": "MAC_N_PAX2", "sequence-type": "addgene-full", "addgene_id": "187736", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187736.addgene-full.gb" }, @@ -94003,7 +118455,10 @@ "plasmid_name": "pDest-302 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161894", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -94015,7 +118470,10 @@ "plasmid_name": "pSL14 - Prp8 2142\u20132398", "sequence-type": "addgene-full", "addgene_id": "90264", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.710848", + "https://www.ncbi.nlm.nih.gov/pubmed/27072132" + ], "kit": null, "file": "data/addgene_plasmids/90264.addgene-full.gb" }, @@ -94024,7 +118482,10 @@ "plasmid_name": "pENTR1a-jAspSnFR3-mRuby3", "sequence-type": "addgene-full", "addgene_id": "203491", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "file": "data/addgene_plasmids/203491.addgene-full.gb" }, @@ -94033,7 +118494,10 @@ "plasmid_name": "pDONR221_SLC47A2", "sequence-type": "addgene-full", "addgene_id": "132239", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132239.addgene-full.gb" }, @@ -94042,7 +118506,10 @@ "plasmid_name": "pYPQ265E6", "sequence-type": "addgene-full", "addgene_id": "213469", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-024-49473-w", + "https://www.ncbi.nlm.nih.gov/pubmed/38877035" + ], "kit": null, "file": "data/addgene_plasmids/213469.addgene-full.gb" }, @@ -94051,7 +118518,10 @@ "plasmid_name": "pWZL-Neo-Myr-Flag-DEST", "sequence-type": "addgene-full", "addgene_id": "15300", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/15300.addgene-full.gb" }, @@ -94060,7 +118530,10 @@ "plasmid_name": "pCAGGS_2pabPAC", "sequence-type": "addgene-full", "addgene_id": "158968", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.0c00333", + "https://www.ncbi.nlm.nih.gov/pubmed/33074647" + ], "kit": null, "file": "data/addgene_plasmids/158968.addgene-full.gb" }, @@ -94069,7 +118542,6 @@ "plasmid_name": "pDest_U6_A2_CG2_T1snp_gRNA", "sequence-type": "addgene-full", "addgene_id": "213789", - "references": [], "kit": null, "file": "data/addgene_plasmids/213789.addgene-full.gb" }, @@ -94078,7 +118550,6 @@ "plasmid_name": "R777-E190 Hs.PREX2-nostop", "sequence-type": "depositor-full", "addgene_id": "70474", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -94090,7 +118561,10 @@ "plasmid_name": "CSIV-DEST", "sequence-type": "addgene-full", "addgene_id": "141053", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141053.addgene-full.gb" }, @@ -94099,7 +118573,10 @@ "plasmid_name": "pGC235", "sequence-type": "depositor-full", "addgene_id": "19683", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19683.depositor-full.gb" }, @@ -94108,7 +118585,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO-miR-30 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62123", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62123.depositor-full.gb" }, @@ -94117,7 +118597,10 @@ "plasmid_name": "pPB-cT3G-cERP2-ELK1", "sequence-type": "addgene-full", "addgene_id": "192918", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192918.addgene-full.gb" }, @@ -94126,7 +118609,10 @@ "plasmid_name": "pHAGE-RAC1-P34R", "sequence-type": "addgene-full", "addgene_id": "116651", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116651.addgene-full.gb" }, @@ -94135,7 +118621,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS5", "sequence-type": "addgene-full", "addgene_id": "145348", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145348.addgene-full.gb" }, @@ -94144,7 +118633,10 @@ "plasmid_name": "pDL70", "sequence-type": "addgene-full", "addgene_id": "175897", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175897.addgene-full.gb" }, @@ -94153,7 +118645,10 @@ "plasmid_name": "pCFJ895 - pEXP5605(cbr-unc-119)[Psmu-1 |smu-1 genomic | GFP-smu-1UTR]", "sequence-type": "depositor-full", "addgene_id": "159817", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159817.depositor-full.gb" }, @@ -94162,7 +118657,10 @@ "plasmid_name": "pHAGE-PIK3CA-C604R", "sequence-type": "addgene-full", "addgene_id": "116458", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116458.addgene-full.gb" }, @@ -94171,7 +118669,10 @@ "plasmid_name": "pHAGE DN Cullin5", "sequence-type": "addgene-full", "addgene_id": "41916", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2011.09.019", + "https://www.ncbi.nlm.nih.gov/pubmed/21963094" + ], "kit": null, "file": "data/addgene_plasmids/41916.addgene-full.gb" }, @@ -94180,7 +118681,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp10", "sequence-type": "depositor-full", "addgene_id": "168899", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168899.depositor-full.gb" }, @@ -94189,7 +118693,10 @@ "plasmid_name": "pLX304-ARNT", "sequence-type": "addgene-full", "addgene_id": "203578", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw1026", + "https://www.ncbi.nlm.nih.gov/pubmed/30872525" + ], "kit": null, "file": "data/addgene_plasmids/203578.addgene-full.gb" }, @@ -94198,7 +118705,10 @@ "plasmid_name": "HJP-473-DNE>FLP-T2A-CreAB-NrdJ-1N", "sequence-type": "addgene-full", "addgene_id": "162480", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162480.addgene-full.gb" }, @@ -94207,7 +118717,6 @@ "plasmid_name": "R777-E066 Hs.ETS2-nostop", "sequence-type": "addgene-full", "addgene_id": "70350", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -94219,7 +118728,10 @@ "plasmid_name": "pDONR221-ZNF805", "sequence-type": "depositor-full", "addgene_id": "101589", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101589.depositor-full.gb" }, @@ -94228,7 +118740,10 @@ "plasmid_name": "pCPP5060", "sequence-type": "addgene-full", "addgene_id": "128716", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-2958.2004.04285.x", + "https://www.ncbi.nlm.nih.gov/pubmed/15469508" + ], "kit": null, "file": "data/addgene_plasmids/128716.addgene-full.gb" }, @@ -94237,7 +118752,10 @@ "plasmid_name": "pDONR221_SLC25A43", "sequence-type": "addgene-full", "addgene_id": "132030", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132030.addgene-full.gb" }, @@ -94246,7 +118764,6 @@ "plasmid_name": "pDONR221-appa", "sequence-type": "addgene-full", "addgene_id": "192745", - "references": [], "kit": null, "file": "data/addgene_plasmids/192745.addgene-full.gb" }, @@ -94255,7 +118772,10 @@ "plasmid_name": "SFRS17A", "sequence-type": "addgene-full", "addgene_id": "156010", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156010.addgene-full.gb" }, @@ -94264,7 +118784,10 @@ "plasmid_name": "pHAGE-CDK12", "sequence-type": "addgene-full", "addgene_id": "116723", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116723.addgene-full.gb" }, @@ -94273,7 +118796,10 @@ "plasmid_name": "pLenti X2 Zeo DEST (749-3)", "sequence-type": "depositor-full", "addgene_id": "21562", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/21562.depositor-full.gb" }, @@ -94282,7 +118808,10 @@ "plasmid_name": "MAC_C_MRM1", "sequence-type": "addgene-full", "addgene_id": "111671", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111671.addgene-full.gb" }, @@ -94291,7 +118820,10 @@ "plasmid_name": "pGWT35S-KOC155-MXMT", "sequence-type": "addgene-full", "addgene_id": "182726", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182726.addgene-full.gb" }, @@ -94300,7 +118832,6 @@ "plasmid_name": "IDG_TMC4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161652", - "references": [], "kit": null, "file": "data/addgene_plasmids/161652.addgene-full.gb" }, @@ -94309,7 +118840,10 @@ "plasmid_name": "pDONR223_HRAS_p.G12A", "sequence-type": "addgene-full", "addgene_id": "81277", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -94321,7 +118855,10 @@ "plasmid_name": "pTol2CG2-QUAS5x:GFPNLS-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155122", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155122.addgene-full.gb" }, @@ -94330,7 +118867,10 @@ "plasmid_name": "TFORF3518", "sequence-type": "depositor-full", "addgene_id": "144994", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144994.depositor-full.gb" }, @@ -94339,7 +118879,10 @@ "plasmid_name": "p5Edusp5E1", "sequence-type": "addgene-full", "addgene_id": "90122", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90122.addgene-full.gb" }, @@ -94348,7 +118891,10 @@ "plasmid_name": "pFRT-TODestMYC_RBPMS_KDR", "sequence-type": "depositor-full", "addgene_id": "65667", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65667.depositor-full.gb" }, @@ -94357,7 +118903,10 @@ "plasmid_name": "pDestTol2-pax3a-kcnj13-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164950", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164950.addgene-full.gb" }, @@ -94366,7 +118915,10 @@ "plasmid_name": "pSBDEST.N", "sequence-type": "addgene-full", "addgene_id": "79468", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79468.addgene-full.gb" }, @@ -94375,7 +118927,10 @@ "plasmid_name": "His8:MBP-tev-Ala-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83393", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.14497", + "https://www.ncbi.nlm.nih.gov/pubmed/28277608" + ], "kit": null, "file": "data/addgene_plasmids/83393.addgene-full.gb" }, @@ -94384,7 +118939,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(V303R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128659", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128659.addgene-full.gb" }, @@ -94393,7 +118951,10 @@ "plasmid_name": "pcDNA5FRT/TO-p47-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113475", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113475.addgene-full.gb" }, @@ -94402,7 +118963,10 @@ "plasmid_name": "pHAGE-PIK3CA-N345K", "sequence-type": "addgene-full", "addgene_id": "116517", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116517.addgene-full.gb" }, @@ -94411,7 +118975,10 @@ "plasmid_name": "pSMALB", "sequence-type": "addgene-full", "addgene_id": "161786", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2013.11.021", + "https://www.ncbi.nlm.nih.gov/pubmed/24388174" + ], "kit": null, "file": "data/addgene_plasmids/161786.addgene-full.gb" }, @@ -94420,7 +118987,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP15", "sequence-type": "addgene-full", "addgene_id": "169388", - "references": [], "kit": null, "file": "data/addgene_plasmids/169388.addgene-full.gb" }, @@ -94429,7 +118995,10 @@ "plasmid_name": "pCFJ2437 - [1-2] ENTR - Fluor - ce-tagRFP-T(PATCs(900bp), NLS, no_atg, no stop)", "sequence-type": "addgene-full", "addgene_id": "159857", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159857.addgene-full.gb" }, @@ -94438,7 +119007,10 @@ "plasmid_name": "TRAPPC10_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176998", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176998.addgene-full.gb" }, @@ -94447,7 +119019,10 @@ "plasmid_name": "MAC_C_RYK", "sequence-type": "addgene-full", "addgene_id": "187790", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187790.addgene-full.gb" }, @@ -94456,7 +119031,10 @@ "plasmid_name": "pDONR223_YY1_WT", "sequence-type": "addgene-full", "addgene_id": "82171", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82171.addgene-full.gb" }, @@ -94465,7 +119043,10 @@ "plasmid_name": "pDONR223_PSG2_p.S265C", "sequence-type": "addgene-full", "addgene_id": "81338", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -94477,7 +119058,10 @@ "plasmid_name": "pPB-R1R2-EM7neoPheS", "sequence-type": "addgene-full", "addgene_id": "112923", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-018-1581-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30477585" + ], "kit": null, "file": "data/addgene_plasmids/112923.addgene-full.gb" }, @@ -94486,7 +119070,10 @@ "plasmid_name": "pADH1-GW", "sequence-type": "addgene-full", "addgene_id": "209372", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209372.addgene-full.gb" }, @@ -94495,7 +119082,10 @@ "plasmid_name": "pDONR221_SLC4A7", "sequence-type": "addgene-full", "addgene_id": "132204", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132204.addgene-full.gb" }, @@ -94504,7 +119094,10 @@ "plasmid_name": "pDONR223 GABARAPL1 G116", "sequence-type": "addgene-full", "addgene_id": "123085", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123085.addgene-full.gb" }, @@ -94513,7 +119106,9 @@ "plasmid_name": "pMpGWB316", "sequence-type": "depositor-full", "addgene_id": "68644", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68644.depositor-full.gb" }, @@ -94522,7 +119117,10 @@ "plasmid_name": "pPB-cT3G-cERP2-NR4A1", "sequence-type": "addgene-full", "addgene_id": "192925", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192925.addgene-full.gb" }, @@ -94531,7 +119129,10 @@ "plasmid_name": "pGMEH-10M1-clpX", "sequence-type": "depositor-full", "addgene_id": "27373", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkp015", + "https://www.ncbi.nlm.nih.gov/pubmed/19174563" + ], "kit": null, "file": "data/addgene_plasmids/27373.depositor-full.gb" }, @@ -94540,7 +119141,6 @@ "plasmid_name": "R777-E306 Hs.SCRIB-nostop", "sequence-type": "depositor-full", "addgene_id": "70590", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -94552,7 +119152,10 @@ "plasmid_name": "pAG424GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14223", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -94564,7 +119167,10 @@ "plasmid_name": "pDONR223_SETDB1_WT", "sequence-type": "addgene-full", "addgene_id": "82291", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82291.addgene-full.gb" }, @@ -94573,7 +119179,10 @@ "plasmid_name": "pGATOR", "sequence-type": "depositor-full", "addgene_id": "64102", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1312062110", + "https://www.ncbi.nlm.nih.gov/pubmed/24082130" + ], "kit": null, "file": "data/addgene_plasmids/64102.depositor-full.gb" }, @@ -94582,7 +119191,10 @@ "plasmid_name": "C125-E01: stuffer", "sequence-type": "addgene-full", "addgene_id": "162900", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -94594,7 +119206,10 @@ "plasmid_name": "pLCS103", "sequence-type": "addgene-full", "addgene_id": "209356", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209356.addgene-full.gb" }, @@ -94603,7 +119218,10 @@ "plasmid_name": "pHAGE-PGUS", "sequence-type": "addgene-full", "addgene_id": "207827", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207827.addgene-full.gb" }, @@ -94612,7 +119230,10 @@ "plasmid_name": "pCSIIbsr_2pabPAC", "sequence-type": "addgene-full", "addgene_id": "158971", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.0c00333", + "https://www.ncbi.nlm.nih.gov/pubmed/33074647" + ], "kit": null, "file": "data/addgene_plasmids/158971.addgene-full.gb" }, @@ -94621,7 +119242,10 @@ "plasmid_name": "pAG414GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14168", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -94633,7 +119257,10 @@ "plasmid_name": "pYPQ265E7", "sequence-type": "addgene-full", "addgene_id": "213470", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-024-49473-w", + "https://www.ncbi.nlm.nih.gov/pubmed/38877035" + ], "kit": null, "file": "data/addgene_plasmids/213470.addgene-full.gb" }, @@ -94642,7 +119269,10 @@ "plasmid_name": "pDONR221-HOXD8", "sequence-type": "addgene-full", "addgene_id": "101402", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101402.addgene-full.gb" }, @@ -94651,7 +119281,10 @@ "plasmid_name": "pENTR D-TOPO-C3_9", "sequence-type": "addgene-full", "addgene_id": "60258", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60258.addgene-full.gb" }, @@ -94660,7 +119293,10 @@ "plasmid_name": "pDONR221_SLC6A9", "sequence-type": "addgene-full", "addgene_id": "132220", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132220.addgene-full.gb" }, @@ -94669,7 +119305,6 @@ "plasmid_name": "Hs.KRAS4b M188L", "sequence-type": "depositor-full", "addgene_id": "83141", - "references": [], "kit": null, "file": "data/addgene_plasmids/83141.depositor-full.gb" }, @@ -94678,7 +119313,10 @@ "plasmid_name": "pLenti-jAspSnFR3", "sequence-type": "addgene-full", "addgene_id": "203488", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "file": "data/addgene_plasmids/203488.addgene-full.gb" }, @@ -94687,7 +119325,6 @@ "plasmid_name": "K40R-short-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "195407", - "references": [], "kit": null, "file": "data/addgene_plasmids/195407.addgene-full.gb" }, @@ -94696,7 +119333,10 @@ "plasmid_name": "C413-E31: attB4-TRE3Gp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162924", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -94708,7 +119348,10 @@ "plasmid_name": "pCZGY921", "sequence-type": "addgene-full", "addgene_id": "135092", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.1000265", + "https://www.ncbi.nlm.nih.gov/pubmed/20027209" + ], "kit": null, "file": "data/addgene_plasmids/135092.addgene-full.gb" }, @@ -94717,7 +119360,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 55-852)", "sequence-type": "addgene-full", "addgene_id": "119314", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119314.addgene-full.gb" }, @@ -94726,7 +119372,10 @@ "plasmid_name": "pCellFree_G06_ZIKV E", "sequence-type": "addgene-full", "addgene_id": "145351", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145351.addgene-full.gb" }, @@ -94735,7 +119384,10 @@ "plasmid_name": "pPB-cT3G-cERP2-FOSB", "sequence-type": "addgene-full", "addgene_id": "192901", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192901.addgene-full.gb" }, @@ -94744,7 +119396,10 @@ "plasmid_name": "AAEL012356 AstC R", "sequence-type": "addgene-full", "addgene_id": "115401", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115401.addgene-full.gb" }, @@ -94753,7 +119408,10 @@ "plasmid_name": "LIIIbeta R C-D", "sequence-type": "depositor-full", "addgene_id": "54392", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54392.depositor-full.gb" }, @@ -94762,7 +119420,10 @@ "plasmid_name": "pALS099 (pGEX-2TP-cTevHis-DEST)", "sequence-type": "addgene-full", "addgene_id": "139787", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.118.301518", + "https://www.ncbi.nlm.nih.gov/pubmed/30185429" + ], "kit": null, "file": "data/addgene_plasmids/139787.addgene-full.gb" }, @@ -94771,7 +119432,10 @@ "plasmid_name": "pHAGE-PTPN11-V51A", "sequence-type": "addgene-full", "addgene_id": "116648", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116648.addgene-full.gb" }, @@ -94780,7 +119444,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp15", "sequence-type": "depositor-full", "addgene_id": "168961", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168961.depositor-full.gb" }, @@ -94789,7 +119456,6 @@ "plasmid_name": "EEF1A2 - G305S in pENTR", "sequence-type": "addgene-full", "addgene_id": "216589", - "references": [], "kit": null, "file": "data/addgene_plasmids/216589.addgene-full.gb" }, @@ -94798,7 +119464,6 @@ "plasmid_name": "R777-E142 Hs.NFE2L2-nostop", "sequence-type": "depositor-full", "addgene_id": "70426", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -94810,7 +119475,10 @@ "plasmid_name": "pAG426GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14395", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -94822,7 +119490,10 @@ "plasmid_name": "pMuLE ENTR SV40 Luc2 (FF-Luciferase) L3-L2", "sequence-type": "depositor-full", "addgene_id": "62171", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62171.depositor-full.gb" }, @@ -94831,7 +119502,10 @@ "plasmid_name": "UAS:Zebrabow-B", "sequence-type": "addgene-full", "addgene_id": "118216", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094631", + "https://www.ncbi.nlm.nih.gov/pubmed/23757414" + ], "kit": null, "file": "data/addgene_plasmids/118216.addgene-full.gb" }, @@ -94840,7 +119514,10 @@ "plasmid_name": "pDEHISSIRV119", "sequence-type": "addgene-full", "addgene_id": "97054", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97054.addgene-full.gb" }, @@ -94849,7 +119526,10 @@ "plasmid_name": "pDEST15-Eps8L2_1-183", "sequence-type": "addgene-full", "addgene_id": "196535", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196535.addgene-full.gb" }, @@ -94858,7 +119538,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0529-luc2", "sequence-type": "addgene-full", "addgene_id": "214659", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214659.addgene-full.gb" }, @@ -94867,7 +119550,6 @@ "plasmid_name": "pEF 3-6HTnos-2", "sequence-type": "depositor-full", "addgene_id": "20102", - "references": [], "kit": null, "file": "data/addgene_plasmids/20102.depositor-full.gb" }, @@ -94876,7 +119558,10 @@ "plasmid_name": "pDONR221-SLC4A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161442", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161442.addgene-full.gb" }, @@ -94885,7 +119570,10 @@ "plasmid_name": "pENTR/D-Topo genomic A. thaliana IMPORTIN ALPHA 4", "sequence-type": "addgene-full", "addgene_id": "175815", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12691", + "https://www.ncbi.nlm.nih.gov/pubmed/25284001" + ], "kit": null, "file": "data/addgene_plasmids/175815.addgene-full.gb" }, @@ -94894,7 +119582,10 @@ "plasmid_name": "pCFJ2060 - [1-2] ENTR - Tag - Snap (intron(1), syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159873", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159873.addgene-full.gb" }, @@ -94903,7 +119594,10 @@ "plasmid_name": "MAC_C_DUX4_KBM", "sequence-type": "addgene-full", "addgene_id": "187800", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187800.addgene-full.gb" }, @@ -94912,7 +119606,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.E290K", "sequence-type": "addgene-full", "addgene_id": "81387", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -94924,7 +119621,10 @@ "plasmid_name": "pB-Halo,IRES-NGFR", "sequence-type": "addgene-full", "addgene_id": "164520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.10.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33080218" + ], "kit": null, "file": "data/addgene_plasmids/164520.addgene-full.gb" }, @@ -94933,7 +119633,10 @@ "plasmid_name": "MAC_N_KLF16", "sequence-type": "addgene-full", "addgene_id": "167769", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167769.addgene-full.gb" }, @@ -94942,7 +119645,10 @@ "plasmid_name": "pDONRp5-p2 SspB-mCherry-CShroom3", "sequence-type": "addgene-full", "addgene_id": "170977", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33115-0", + "https://www.ncbi.nlm.nih.gov/pubmed/36104355" + ], "kit": null, "file": "data/addgene_plasmids/170977.addgene-full.gb" }, @@ -94951,7 +119657,10 @@ "plasmid_name": "pDest_U6_A2_CG2_T3_gRNA", "sequence-type": "addgene-full", "addgene_id": "199389", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "file": "data/addgene_plasmids/199389.addgene-full.gb" }, @@ -94960,7 +119669,10 @@ "plasmid_name": "pHAGE-PIK3CA-R108L", "sequence-type": "addgene-full", "addgene_id": "116533", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116533.addgene-full.gb" }, @@ -94969,7 +119681,10 @@ "plasmid_name": "pMW#2", "sequence-type": "addgene-full", "addgene_id": "13349", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/16777607" + ], "kit": null, "file": "data/addgene_plasmids/13349.addgene-full.gb" }, @@ -94978,7 +119693,10 @@ "plasmid_name": "pLD-puro-Cc-TARDBP-W385G_VA", "sequence-type": "addgene-full", "addgene_id": "141331", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "file": "data/addgene_plasmids/141331.addgene-full.gb" }, @@ -94987,7 +119705,10 @@ "plasmid_name": "pDONR223-EPHB4", "sequence-type": "addgene-full", "addgene_id": "23896", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -94999,7 +119720,10 @@ "plasmid_name": "pYPQ269A2", "sequence-type": "addgene-full", "addgene_id": "164714", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164714.addgene-full.gb" }, @@ -95008,7 +119732,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term NONO", "sequence-type": "addgene-full", "addgene_id": "187580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187580.addgene-full.gb" }, @@ -95017,7 +119744,10 @@ "plasmid_name": "pDONR P4-P1R-mKate2", "sequence-type": "depositor-full", "addgene_id": "48344", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -95029,7 +119759,10 @@ "plasmid_name": "pHAGE-WDR12-S127F", "sequence-type": "addgene-full", "addgene_id": "116707", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116707.addgene-full.gb" }, @@ -95038,7 +119771,10 @@ "plasmid_name": "MSCV-N BNLF2a", "sequence-type": "addgene-full", "addgene_id": "37941", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "file": "data/addgene_plasmids/37941.addgene-full.gb" }, @@ -95047,7 +119783,10 @@ "plasmid_name": "pCAG/ATP11B-HA", "sequence-type": "addgene-full", "addgene_id": "209219", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209219.addgene-full.gb" }, @@ -95056,7 +119795,6 @@ "plasmid_name": "pENTR-L4R1-hCMVstar1+bgloInt", "sequence-type": "addgene-full", "addgene_id": "139528", - "references": [], "kit": null, "file": "data/addgene_plasmids/139528.addgene-full.gb" }, @@ -95065,7 +119803,10 @@ "plasmid_name": "pDONR223-MST1R", "sequence-type": "addgene-full", "addgene_id": "23942", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -95077,7 +119818,10 @@ "plasmid_name": "Active Wnt10A-V5", "sequence-type": "depositor-full", "addgene_id": "43822", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43822.depositor-full.gb" }, @@ -95086,7 +119830,10 @@ "plasmid_name": "EE-LRRK2", "sequence-type": "addgene-full", "addgene_id": "193583", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2205492119", + "https://www.ncbi.nlm.nih.gov/pubmed/36256825" + ], "kit": null, "file": "data/addgene_plasmids/193583.addgene-full.gb" }, @@ -95095,7 +119842,6 @@ "plasmid_name": "IDG_TTYH2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161676", - "references": [], "kit": null, "file": "data/addgene_plasmids/161676.addgene-full.gb" }, @@ -95104,7 +119850,10 @@ "plasmid_name": "pDEST-Myc-FBW7]K404R", "sequence-type": "addgene-full", "addgene_id": "200715", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "file": "data/addgene_plasmids/200715.addgene-full.gb" }, @@ -95113,7 +119862,10 @@ "plasmid_name": "pDest-521", "sequence-type": "addgene-full", "addgene_id": "159688", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-21422-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33608534" + ], "kit": null, "file": "data/addgene_plasmids/159688.addgene-full.gb" }, @@ -95122,7 +119874,10 @@ "plasmid_name": "pBabe-Hygro-GFP", "sequence-type": "addgene-full", "addgene_id": "61215", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.06.021", + "https://www.ncbi.nlm.nih.gov/pubmed/25042806" + ], "kit": null, "file": "data/addgene_plasmids/61215.addgene-full.gb" }, @@ -95131,7 +119886,6 @@ "plasmid_name": "R777-E184 Hs.PIN1-nostop", "sequence-type": "depositor-full", "addgene_id": "70468", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -95143,7 +119897,10 @@ "plasmid_name": "pMA122 - peel-1 negative selection", "sequence-type": "addgene-full", "addgene_id": "34873", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34873.addgene-full.gb" }, @@ -95152,7 +119909,6 @@ "plasmid_name": "pAG416GAL-3x-uC-HCoV-NL63_3CL", "sequence-type": "addgene-full", "addgene_id": "201938", - "references": [], "kit": null, "file": "data/addgene_plasmids/201938.addgene-full.gb" }, @@ -95161,7 +119917,10 @@ "plasmid_name": "pDONR221_SLC25A10", "sequence-type": "addgene-full", "addgene_id": "132014", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132014.addgene-full.gb" }, @@ -95170,7 +119929,10 @@ "plasmid_name": "pENTR221-YAP1", "sequence-type": "addgene-full", "addgene_id": "79503", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79503.addgene-full.gb" }, @@ -95179,7 +119941,10 @@ "plasmid_name": "pCPP5371", "sequence-type": "addgene-full", "addgene_id": "128732", - "references": [], + "references": [ + "https://doi.org/10.1128/JB.00998-07", + "https://www.ncbi.nlm.nih.gov/pubmed/17827286" + ], "kit": null, "file": "data/addgene_plasmids/128732.addgene-full.gb" }, @@ -95188,7 +119953,10 @@ "plasmid_name": "Tet-myr-GFP", "sequence-type": "depositor-full", "addgene_id": "83468", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201501025", + "https://www.ncbi.nlm.nih.gov/pubmed/26216901" + ], "kit": null, "file": "data/addgene_plasmids/83468.depositor-full.gb" }, @@ -95197,7 +119965,10 @@ "plasmid_name": "SNW1", "sequence-type": "addgene-full", "addgene_id": "156034", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156034.addgene-full.gb" }, @@ -95206,7 +119977,10 @@ "plasmid_name": "pHAGE-MCM5__LYN", "sequence-type": "addgene-full", "addgene_id": "116828", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116828.addgene-full.gb" }, @@ -95215,7 +119989,10 @@ "plasmid_name": "TU#1450_unc-53a_cDNA", "sequence-type": "addgene-full", "addgene_id": "82361", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1607179113", + "https://www.ncbi.nlm.nih.gov/pubmed/27274054" + ], "kit": null, "file": "data/addgene_plasmids/82361.addgene-full.gb" }, @@ -95224,7 +120001,10 @@ "plasmid_name": "pEarleyGate103 mmPing20F", "sequence-type": "addgene-full", "addgene_id": "140007", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.300", + "https://www.ncbi.nlm.nih.gov/pubmed/33506165" + ], "kit": null, "file": "data/addgene_plasmids/140007.addgene-full.gb" }, @@ -95233,7 +120013,10 @@ "plasmid_name": "R701-X20-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) G12C", "sequence-type": "addgene-full", "addgene_id": "159568", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159568.addgene-full.gb" }, @@ -95242,7 +120025,10 @@ "plasmid_name": "pHAGE-PIK3R1-I381Kfs*15", "sequence-type": "addgene-full", "addgene_id": "116595", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116595.addgene-full.gb" }, @@ -95251,7 +120037,10 @@ "plasmid_name": "pDONR221-ZNF735", "sequence-type": "depositor-full", "addgene_id": "101595", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101595.depositor-full.gb" }, @@ -95260,7 +120049,10 @@ "plasmid_name": "pLentiPGK Puro DEST JNKKTR AE Clover", "sequence-type": "addgene-full", "addgene_id": "90240", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "file": "data/addgene_plasmids/90240.addgene-full.gb" }, @@ -95269,7 +120061,10 @@ "plasmid_name": "pDONR223_XBP1_WT", "sequence-type": "addgene-full", "addgene_id": "82168", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82168.addgene-full.gb" }, @@ -95278,7 +120073,10 @@ "plasmid_name": "pDONR223_RHOA_p.T175M", "sequence-type": "addgene-full", "addgene_id": "81321", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -95290,7 +120088,6 @@ "plasmid_name": "p667-UBC-PSKH2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170585", - "references": [], "kit": null, "file": "data/addgene_plasmids/170585.addgene-full.gb" }, @@ -95299,7 +120096,10 @@ "plasmid_name": "pGEM-gate", "sequence-type": "depositor-full", "addgene_id": "113758", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -95311,7 +120111,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF9b", "sequence-type": "depositor-full", "addgene_id": "168885", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168885.depositor-full.gb" }, @@ -95320,7 +120123,10 @@ "plasmid_name": "pDONR223_SLIRP_WT", "sequence-type": "addgene-full", "addgene_id": "82288", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82288.addgene-full.gb" }, @@ -95329,7 +120135,10 @@ "plasmid_name": "C239-E03: attB2r-IRES-ffLuc2-pA-attB3", "sequence-type": "addgene-full", "addgene_id": "162919", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -95341,7 +120150,10 @@ "plasmid_name": "pHAGE-ROR1-T69M", "sequence-type": "addgene-full", "addgene_id": "116675", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116675.addgene-full.gb" }, @@ -95350,7 +120162,10 @@ "plasmid_name": "pAAV-Fos-CreERT2", "sequence-type": "addgene-full", "addgene_id": "194643", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-022-01223-1", + "https://www.ncbi.nlm.nih.gov/pubmed/36564546" + ], "kit": null, "file": "data/addgene_plasmids/194643.addgene-full.gb" }, @@ -95359,7 +120174,10 @@ "plasmid_name": "pMpGWB103-Citrine", "sequence-type": "depositor-full", "addgene_id": "79137", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pct168", + "https://www.ncbi.nlm.nih.gov/pubmed/24259681" + ], "kit": null, "file": "data/addgene_plasmids/79137.depositor-full.gb" }, @@ -95368,7 +120186,10 @@ "plasmid_name": "Silene_conica _TyrRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202657", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "file": "data/addgene_plasmids/202657.addgene-full.gb" }, @@ -95377,7 +120198,10 @@ "plasmid_name": "pNFkB:eGFP", "sequence-type": "addgene-full", "addgene_id": "44922", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2011.03.042", + "https://www.ncbi.nlm.nih.gov/pubmed/21439961" + ], "kit": null, "file": "data/addgene_plasmids/44922.addgene-full.gb" }, @@ -95386,7 +120210,9 @@ "plasmid_name": "pMpGWB225", "sequence-type": "depositor-full", "addgene_id": "68616", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68616.depositor-full.gb" }, @@ -95395,7 +120221,10 @@ "plasmid_name": "pDONR221_SLC41A3", "sequence-type": "addgene-full", "addgene_id": "132166", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132166.addgene-full.gb" }, @@ -95404,7 +120233,10 @@ "plasmid_name": "pDestTol2-actinb-kcnk9-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164949", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164949.addgene-full.gb" }, @@ -95413,7 +120245,10 @@ "plasmid_name": "pAG424GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14271", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -95425,7 +120260,10 @@ "plasmid_name": "Flag-HA-USP11", "sequence-type": "addgene-full", "addgene_id": "22566", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22566.addgene-full.gb" }, @@ -95434,7 +120272,10 @@ "plasmid_name": "pDe_Cas9_KANA_R160b", "sequence-type": "addgene-full", "addgene_id": "173757", - "references": [], + "references": [ + "https://doi.org/10.1093/hr/uhac147", + "https://www.ncbi.nlm.nih.gov/pubmed/36072839" + ], "kit": null, "file": "data/addgene_plasmids/173757.addgene-full.gb" }, @@ -95443,7 +120284,6 @@ "plasmid_name": "L4440gtwy", "sequence-type": "addgene-full", "addgene_id": "11344", - "references": [], "kit": null, "file": "data/addgene_plasmids/11344.addgene-full.gb" }, @@ -95452,7 +120292,10 @@ "plasmid_name": "pDONR223_ING1_WT", "sequence-type": "addgene-full", "addgene_id": "82213", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82213.addgene-full.gb" }, @@ -95461,7 +120304,10 @@ "plasmid_name": "pMuLE ENTR SV40 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62095", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62095.depositor-full.gb" }, @@ -95470,7 +120316,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0546-luc2", "sequence-type": "addgene-full", "addgene_id": "214664", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214664.addgene-full.gb" }, @@ -95479,7 +120328,10 @@ "plasmid_name": "C453-E26: attB4-T7p>-attB5", "sequence-type": "addgene-full", "addgene_id": "162982", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -95491,7 +120343,10 @@ "plasmid_name": "pDEST40-2XFL-wtSrc", "sequence-type": "addgene-full", "addgene_id": "140295", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140295.addgene-full.gb" }, @@ -95500,7 +120355,10 @@ "plasmid_name": "MAC_N_ETV5", "sequence-type": "addgene-full", "addgene_id": "167754", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167754.addgene-full.gb" }, @@ -95509,7 +120367,10 @@ "plasmid_name": "KCNJ15_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176981", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176981.addgene-full.gb" }, @@ -95518,7 +120379,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF3b", "sequence-type": "addgene-full", "addgene_id": "169391", - "references": [], "kit": null, "file": "data/addgene_plasmids/169391.addgene-full.gb" }, @@ -95527,7 +120387,10 @@ "plasmid_name": "pDONR221_UCP2", "sequence-type": "addgene-full", "addgene_id": "132286", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132286.addgene-full.gb" }, @@ -95536,7 +120399,10 @@ "plasmid_name": "p6608 MSCV-IP N-HAonly CHAF1B", "sequence-type": "addgene-full", "addgene_id": "34901", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1116776109", + "https://www.ncbi.nlm.nih.gov/pubmed/22232672" + ], "kit": null, "file": "data/addgene_plasmids/34901.addgene-full.gb" }, @@ -95545,7 +120411,10 @@ "plasmid_name": "MAC_C_HXK1", "sequence-type": "addgene-full", "addgene_id": "111668", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111668.addgene-full.gb" }, @@ -95554,7 +120423,10 @@ "plasmid_name": "WPXL LEFTY2 gRNA", "sequence-type": "addgene-full", "addgene_id": "101924", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-017-0002-y", + "https://www.ncbi.nlm.nih.gov/pubmed/29203910" + ], "kit": null, "file": "data/addgene_plasmids/101924.addgene-full.gb" }, @@ -95563,7 +120435,6 @@ "plasmid_name": "pLEX307-TMPRSS2-puro", "sequence-type": "addgene-full", "addgene_id": "158457", - "references": [], "kit": null, "file": "data/addgene_plasmids/158457.addgene-full.gb" }, @@ -95572,7 +120443,10 @@ "plasmid_name": "TFORF3512", "sequence-type": "depositor-full", "addgene_id": "144988", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144988.depositor-full.gb" }, @@ -95581,7 +120455,10 @@ "plasmid_name": "pcDNA3/HF-CDC50B", "sequence-type": "addgene-full", "addgene_id": "209224", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209224.addgene-full.gb" }, @@ -95590,7 +120467,10 @@ "plasmid_name": "pEX-CMV-SP-CFP-STM2(15-746)", "sequence-type": "depositor-full", "addgene_id": "18863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "file": "data/addgene_plasmids/18863.depositor-full.gb" }, @@ -95599,7 +120479,10 @@ "plasmid_name": "pRU54", "sequence-type": "addgene-full", "addgene_id": "167680", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167680.addgene-full.gb" }, @@ -95608,7 +120491,10 @@ "plasmid_name": "pYZ960", "sequence-type": "addgene-full", "addgene_id": "187972", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkad491", + "https://www.ncbi.nlm.nih.gov/pubmed/37326023" + ], "kit": null, "file": "data/addgene_plasmids/187972.addgene-full.gb" }, @@ -95617,7 +120503,9 @@ "plasmid_name": "pMpGWB330", "sequence-type": "depositor-full", "addgene_id": "68658", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68658.depositor-full.gb" }, @@ -95626,7 +120514,10 @@ "plasmid_name": "pHAGE-NOTCH2NL-R87M", "sequence-type": "addgene-full", "addgene_id": "116441", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116441.addgene-full.gb" }, @@ -95635,7 +120526,10 @@ "plasmid_name": "pWZL Neo Myr Flag ADRBK2", "sequence-type": "addgene-full", "addgene_id": "20419", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20419.addgene-full.gb" }, @@ -95644,7 +120538,10 @@ "plasmid_name": "SFRS16", "sequence-type": "addgene-full", "addgene_id": "156009", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156009.addgene-full.gb" }, @@ -95653,7 +120550,10 @@ "plasmid_name": "pHAGE-EGFR__ERP44", "sequence-type": "addgene-full", "addgene_id": "116815", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116815.addgene-full.gb" }, @@ -95662,7 +120562,10 @@ "plasmid_name": "pDONR221_SLC25A36", "sequence-type": "addgene-full", "addgene_id": "132029", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132029.addgene-full.gb" }, @@ -95671,7 +120574,10 @@ "plasmid_name": "pLENTI_Hu_ECT2(T327D)", "sequence-type": "addgene-full", "addgene_id": "136332", - "references": [], + "references": [ + "https://doi.org/10.1038/nm.4364", + "https://www.ncbi.nlm.nih.gov/pubmed/28692064" + ], "kit": null, "file": "data/addgene_plasmids/136332.addgene-full.gb" }, @@ -95680,7 +120586,10 @@ "plasmid_name": "R989-X28-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12D", "sequence-type": "addgene-full", "addgene_id": "159555", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159555.addgene-full.gb" }, @@ -95689,7 +120598,10 @@ "plasmid_name": "pENTR D-TOPO-C2_13", "sequence-type": "depositor-full", "addgene_id": "60252", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60252.depositor-full.gb" }, @@ -95698,7 +120610,9 @@ "plasmid_name": "All_in_one_CRISPR/Cas9_LacZ", "sequence-type": "depositor-full", "addgene_id": "74293", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27089539" + ], "kit": null, "file": "data/addgene_plasmids/74293.depositor-full.gb" }, @@ -95707,7 +120621,10 @@ "plasmid_name": "pLenti-Creb5(HA)", "sequence-type": "addgene-full", "addgene_id": "195024", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "file": "data/addgene_plasmids/195024.addgene-full.gb" }, @@ -95716,7 +120633,10 @@ "plasmid_name": "A1-LCD+12D", "sequence-type": "addgene-full", "addgene_id": "178675", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178675.addgene-full.gb" }, @@ -95725,7 +120645,10 @@ "plasmid_name": "A1-LCD deltahexa", "sequence-type": "addgene-full", "addgene_id": "169714", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "file": "data/addgene_plasmids/169714.addgene-full.gb" }, @@ -95734,7 +120657,9 @@ "plasmid_name": "pMpGWB200", "sequence-type": "depositor-full", "addgene_id": "68591", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68591.depositor-full.gb" }, @@ -95743,7 +120668,6 @@ "plasmid_name": "pDEST-attB", "sequence-type": "depositor-full", "addgene_id": "30325", - "references": [], "kit": null, "file": "data/addgene_plasmids/30325.depositor-full.gb" }, @@ -95752,7 +120676,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp14", "sequence-type": "addgene-full", "addgene_id": "168939", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168939.addgene-full.gb" }, @@ -95761,7 +120688,10 @@ "plasmid_name": "pLEX307-MERS-CoV-3CL-C148A", "sequence-type": "addgene-full", "addgene_id": "160283", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160283.addgene-full.gb" }, @@ -95770,7 +120700,10 @@ "plasmid_name": "pGEX6P1-human LIC1 G domain", "sequence-type": "addgene-full", "addgene_id": "74598", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.03351", + "https://www.ncbi.nlm.nih.gov/pubmed/25272277" + ], "kit": null, "file": "data/addgene_plasmids/74598.addgene-full.gb" }, @@ -95779,7 +120712,10 @@ "plasmid_name": "pEN_TT 3xFLAG-DYNLL2", "sequence-type": "addgene-full", "addgene_id": "192296", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192296.addgene-full.gb" }, @@ -95788,7 +120724,10 @@ "plasmid_name": "pDONR223_EGFR_p.R222L", "sequence-type": "addgene-full", "addgene_id": "82922", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82922.addgene-full.gb" }, @@ -95797,7 +120736,10 @@ "plasmid_name": "IX503: pMVP (L3-L2) OLLAS epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121752", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121752.addgene-full.gb" }, @@ -95806,7 +120748,10 @@ "plasmid_name": "pGWB419", "sequence-type": "depositor-full", "addgene_id": "74813", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74813.depositor-full.gb" }, @@ -95815,7 +120760,10 @@ "plasmid_name": "pDONR223_KIR3DL2_p.R96Q", "sequence-type": "addgene-full", "addgene_id": "81444", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -95827,7 +120775,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_CdTag-HA", "sequence-type": "addgene-full", "addgene_id": "221493", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221493.addgene-full.gb" }, @@ -95836,7 +120787,10 @@ "plasmid_name": "pCW-eGFP-SHLD2-m1", "sequence-type": "addgene-full", "addgene_id": "114120", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "file": "data/addgene_plasmids/114120.addgene-full.gb" }, @@ -95845,7 +120799,10 @@ "plasmid_name": "TFORF3194", "sequence-type": "addgene-full", "addgene_id": "144670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144670.addgene-full.gb" }, @@ -95854,7 +120811,10 @@ "plasmid_name": "p3E-Rab27b", "sequence-type": "addgene-full", "addgene_id": "109754", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109754.addgene-full.gb" }, @@ -95863,7 +120823,6 @@ "plasmid_name": "pFRT-TODestFLAGHA_RNAseH1", "sequence-type": "addgene-full", "addgene_id": "65782", - "references": [], "kit": null, "file": "data/addgene_plasmids/65782.addgene-full.gb" }, @@ -95872,7 +120831,10 @@ "plasmid_name": "pDONR221_SLC12A8", "sequence-type": "addgene-full", "addgene_id": "131885", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131885.addgene-full.gb" }, @@ -95881,7 +120843,10 @@ "plasmid_name": "pAC1802_pmax-RBFOX1N-dCasRx-C", "sequence-type": "addgene-full", "addgene_id": "118635", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118635.addgene-full.gb" }, @@ -95890,7 +120855,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-H2B-mCherry (dual gRNA: Ascl1 x2)", "sequence-type": "addgene-full", "addgene_id": "171099", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/171099.addgene-full.gb" }, @@ -95899,7 +120867,10 @@ "plasmid_name": "pcDNA3-IKZF2-V2-V5", "sequence-type": "addgene-full", "addgene_id": "107391", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107391.addgene-full.gb" }, @@ -95908,7 +120879,6 @@ "plasmid_name": "pDONR223 LysoFlux (HaloTag7-mGFP-Galectin3-STOP)", "sequence-type": "addgene-full", "addgene_id": "215003", - "references": [], "kit": null, "file": "data/addgene_plasmids/215003.addgene-full.gb" }, @@ -95917,7 +120887,6 @@ "plasmid_name": "R777-E038 Hs.DUSP3-nostop", "sequence-type": "depositor-full", "addgene_id": "70322", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -95929,7 +120898,10 @@ "plasmid_name": "pHAGE-ALK-R1209Q", "sequence-type": "addgene-full", "addgene_id": "116110", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116110.addgene-full.gb" }, @@ -95938,7 +120910,10 @@ "plasmid_name": "pMOS031: superecliptic pHluorin (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163051", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163051.addgene-full.gb" }, @@ -95947,7 +120922,10 @@ "plasmid_name": "TFORF3114", "sequence-type": "addgene-full", "addgene_id": "144590", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144590.addgene-full.gb" }, @@ -95956,7 +120934,10 @@ "plasmid_name": "pDONR221-SLC46A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161381", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161381.addgene-full.gb" }, @@ -95965,7 +120946,10 @@ "plasmid_name": "pDONR223_B2M_WT", "sequence-type": "addgene-full", "addgene_id": "81810", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -95977,7 +120961,10 @@ "plasmid_name": "pcDNA3.2/NS5-Mt-mut", "sequence-type": "addgene-full", "addgene_id": "120830", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120830.addgene-full.gb" }, @@ -95986,7 +120973,10 @@ "plasmid_name": "p3E-rab23", "sequence-type": "addgene-full", "addgene_id": "109680", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109680.addgene-full.gb" }, @@ -95995,7 +120985,10 @@ "plasmid_name": "pDONR221_SLC11A1", "sequence-type": "addgene-full", "addgene_id": "131951", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131951.addgene-full.gb" }, @@ -96004,7 +120997,6 @@ "plasmid_name": "pLenti_PGK_Prkaa1", "sequence-type": "addgene-full", "addgene_id": "204356", - "references": [], "kit": null, "file": "data/addgene_plasmids/204356.addgene-full.gb" }, @@ -96013,7 +121005,10 @@ "plasmid_name": "pQLinkHD_EBFP2-mTFP1", "sequence-type": "addgene-full", "addgene_id": "118855", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "file": "data/addgene_plasmids/118855.addgene-full.gb" }, @@ -96022,7 +121017,10 @@ "plasmid_name": "PLX306 iCre tetO NICD rtTA", "sequence-type": "addgene-full", "addgene_id": "158049", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aax0902", + "https://www.ncbi.nlm.nih.gov/pubmed/32165588" + ], "kit": null, "file": "data/addgene_plasmids/158049.addgene-full.gb" }, @@ -96031,7 +121029,10 @@ "plasmid_name": "TFORF3334", "sequence-type": "addgene-full", "addgene_id": "144810", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144810.addgene-full.gb" }, @@ -96040,7 +121041,10 @@ "plasmid_name": "pDONR223_PIK3R4_p.N870T", "sequence-type": "addgene-full", "addgene_id": "81590", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -96052,7 +121056,10 @@ "plasmid_name": "p5E-161K enhancer-ETS-CORE-MUT", "sequence-type": "addgene-full", "addgene_id": "138372", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138372.addgene-full.gb" }, @@ -96061,7 +121068,10 @@ "plasmid_name": "pEBTetD-SNAP-CP110", "sequence-type": "addgene-full", "addgene_id": "136803", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136803.addgene-full.gb" }, @@ -96070,7 +121080,10 @@ "plasmid_name": "pDONOR223 R2pH-LAMP1-3xFLAG", "sequence-type": "addgene-full", "addgene_id": "157941", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2020.1771858", + "https://www.ncbi.nlm.nih.gov/pubmed/32515674" + ], "kit": null, "file": "data/addgene_plasmids/157941.addgene-full.gb" }, @@ -96079,7 +121092,6 @@ "plasmid_name": "pCLX-PGK-hCDK4", "sequence-type": "addgene-full", "addgene_id": "114314", - "references": [], "kit": null, "file": "data/addgene_plasmids/114314.addgene-full.gb" }, @@ -96088,7 +121100,10 @@ "plasmid_name": "pDONR223_NRAS_p.Q61H", "sequence-type": "addgene-full", "addgene_id": "81670", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -96100,7 +121115,10 @@ "plasmid_name": "pDR3.13", "sequence-type": "depositor-full", "addgene_id": "19366", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19366.depositor-full.gb" }, @@ -96109,7 +121127,10 @@ "plasmid_name": "pDONR221-SLC30A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161255", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161255.addgene-full.gb" }, @@ -96118,7 +121139,10 @@ "plasmid_name": "5'-3xFLAG Sap30bp+exon_siResist minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212085", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212085.addgene-full.gb" }, @@ -96127,7 +121151,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp16", "sequence-type": "addgene-full", "addgene_id": "168876", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168876.addgene-full.gb" }, @@ -96136,7 +121163,10 @@ "plasmid_name": "pFUGW-FerH-ffLuc2-eGFP", "sequence-type": "depositor-full", "addgene_id": "71393", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1755-148X.2009.00545.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19175523" + ], "kit": null, "file": "data/addgene_plasmids/71393.depositor-full.gb" }, @@ -96145,7 +121175,10 @@ "plasmid_name": "35S-VP16-GWY/pAM", "sequence-type": "addgene-full", "addgene_id": "201234", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16234", + "https://www.ncbi.nlm.nih.gov/pubmed/37323061" + ], "kit": null, "file": "data/addgene_plasmids/201234.addgene-full.gb" }, @@ -96154,7 +121187,10 @@ "plasmid_name": "TFORF2968", "sequence-type": "addgene-full", "addgene_id": "144444", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144444.addgene-full.gb" }, @@ -96163,7 +121199,10 @@ "plasmid_name": "p3E-EEA1", "sequence-type": "addgene-full", "addgene_id": "109560", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109560.addgene-full.gb" }, @@ -96172,7 +121211,6 @@ "plasmid_name": "pCW57.1_V5_APEX_FLAG_Ct", "sequence-type": "addgene-full", "addgene_id": "194069", - "references": [], "kit": null, "file": "data/addgene_plasmids/194069.addgene-full.gb" }, @@ -96181,7 +121219,6 @@ "plasmid_name": "pCM3.05", "sequence-type": "depositor-full", "addgene_id": "19601", - "references": [], "kit": null, "file": "data/addgene_plasmids/19601.depositor-full.gb" }, @@ -96190,7 +121227,10 @@ "plasmid_name": "pAG425GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14345", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -96202,7 +121242,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND F405G + S297A", "sequence-type": "addgene-full", "addgene_id": "169974", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169974.addgene-full.gb" }, @@ -96211,7 +121254,10 @@ "plasmid_name": "ZNF217_pLX307", "sequence-type": "addgene-full", "addgene_id": "98384", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98384.addgene-full.gb" }, @@ -96220,7 +121266,10 @@ "plasmid_name": "iTol2Amp-\u03b3-crystallin:venusGFP", "sequence-type": "addgene-full", "addgene_id": "108462", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1716713115", + "https://www.ncbi.nlm.nih.gov/pubmed/29610343" + ], "kit": null, "file": "data/addgene_plasmids/108462.addgene-full.gb" }, @@ -96229,7 +121278,10 @@ "plasmid_name": "HB401: pMVP (L1-L4) CMV promoter", "sequence-type": "addgene-full", "addgene_id": "121686", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121686.addgene-full.gb" }, @@ -96238,7 +121290,10 @@ "plasmid_name": "pDONR223_HAVCR2_p.P6S", "sequence-type": "addgene-full", "addgene_id": "82742", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82742.addgene-full.gb" }, @@ -96247,7 +121302,10 @@ "plasmid_name": "JDW 249 (pTol2-Dll4-F2-ETS#2-WT-8X-E1b-EGFP)", "sequence-type": "addgene-full", "addgene_id": "156417", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156417.addgene-full.gb" }, @@ -96256,7 +121314,10 @@ "plasmid_name": "pEN_TTmiRc2_p53(R280K)_V5", "sequence-type": "addgene-full", "addgene_id": "136525", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136525.addgene-full.gb" }, @@ -96265,7 +121326,10 @@ "plasmid_name": "pDONR221-SLC7A13_STOP", "sequence-type": "addgene-full", "addgene_id": "161327", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161327.addgene-full.gb" }, @@ -96274,7 +121338,10 @@ "plasmid_name": "pDEST17-cDAXX", "sequence-type": "addgene-full", "addgene_id": "169729", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169729.addgene-full.gb" }, @@ -96283,7 +121350,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.D1045V", "sequence-type": "addgene-full", "addgene_id": "81702", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -96295,7 +121365,10 @@ "plasmid_name": "p3E-mTagBFP", "sequence-type": "depositor-full", "addgene_id": "75175", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -96307,7 +121380,10 @@ "plasmid_name": "pBA2257", "sequence-type": "depositor-full", "addgene_id": "38151", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2011.11.015", + "https://www.ncbi.nlm.nih.gov/pubmed/22197595" + ], "kit": null, "file": "data/addgene_plasmids/38151.depositor-full.gb" }, @@ -96316,7 +121392,10 @@ "plasmid_name": "TFORF3060", "sequence-type": "addgene-full", "addgene_id": "144536", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144536.addgene-full.gb" }, @@ -96325,7 +121404,10 @@ "plasmid_name": "pAM95", "sequence-type": "addgene-full", "addgene_id": "226687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226687.addgene-full.gb" }, @@ -96334,7 +121416,10 @@ "plasmid_name": "pDONR-ARF19", "sequence-type": "depositor-full", "addgene_id": "83846", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83846.depositor-full.gb" }, @@ -96343,7 +121428,10 @@ "plasmid_name": "TFORF3486", "sequence-type": "addgene-full", "addgene_id": "144962", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144962.addgene-full.gb" }, @@ -96352,7 +121440,9 @@ "plasmid_name": "pDONR221-PDHB", "sequence-type": "addgene-full", "addgene_id": "166195", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166195.addgene-full.gb" }, @@ -96361,7 +121451,10 @@ "plasmid_name": "pHAGE-EGFR-G719S", "sequence-type": "addgene-full", "addgene_id": "116256", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116256.addgene-full.gb" }, @@ -96370,7 +121463,10 @@ "plasmid_name": "pENTR223-EBNA3A", "sequence-type": "addgene-full", "addgene_id": "198575", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198575.addgene-full.gb" }, @@ -96379,7 +121475,10 @@ "plasmid_name": "pDONR223_AKT1_p.Q79K", "sequence-type": "addgene-full", "addgene_id": "81479", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -96391,7 +121490,9 @@ "plasmid_name": "pMpGWB423", "sequence-type": "depositor-full", "addgene_id": "68688", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68688.depositor-full.gb" }, @@ -96400,7 +121501,10 @@ "plasmid_name": "pDEST-ERBB2-v1", "sequence-type": "addgene-full", "addgene_id": "154901", - "references": [], + "references": [ + "https://doi.org/10.1038/s41388-020-01604-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33420373" + ], "kit": null, "file": "data/addgene_plasmids/154901.addgene-full.gb" }, @@ -96409,7 +121513,10 @@ "plasmid_name": "pCR8_TaNAM-A1(1-217)", "sequence-type": "addgene-full", "addgene_id": "124576", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "file": "data/addgene_plasmids/124576.addgene-full.gb" }, @@ -96418,7 +121525,10 @@ "plasmid_name": "KL401: pMAGIC (R4-R3) NLS-(SrfI/PmeI)-NLS-Dnmt3a3L", "sequence-type": "addgene-full", "addgene_id": "121840", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121840.addgene-full.gb" }, @@ -96427,7 +121537,10 @@ "plasmid_name": "pDONR223_MRPS16_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82984", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82984.addgene-full.gb" }, @@ -96436,7 +121549,10 @@ "plasmid_name": "pPN441", "sequence-type": "addgene-full", "addgene_id": "137873", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "file": "data/addgene_plasmids/137873.addgene-full.gb" }, @@ -96445,7 +121561,10 @@ "plasmid_name": "pJW4.23", "sequence-type": "depositor-full", "addgene_id": "62876", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62876.depositor-full.gb" }, @@ -96454,7 +121573,10 @@ "plasmid_name": "p3E-rev_U6_MCS", "sequence-type": "addgene-full", "addgene_id": "109769", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109769.addgene-full.gb" }, @@ -96463,7 +121585,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 E_nostop", "sequence-type": "addgene-full", "addgene_id": "149321", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149321.addgene-full.gb" }, @@ -96472,7 +121597,10 @@ "plasmid_name": "pDONR223_YTHDC1_WT", "sequence-type": "addgene-full", "addgene_id": "81799", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -96484,7 +121612,10 @@ "plasmid_name": "pHAGE-EGFR-Y764_V765insHH", "sequence-type": "addgene-full", "addgene_id": "116319", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116319.addgene-full.gb" }, @@ -96493,7 +121624,10 @@ "plasmid_name": "TFORF3323", "sequence-type": "addgene-full", "addgene_id": "144799", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144799.addgene-full.gb" }, @@ -96502,7 +121636,10 @@ "plasmid_name": "pLX301-ZIM3-KRAB-PYL1", "sequence-type": "addgene-full", "addgene_id": "154761", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-020-0966-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33020655" + ], "kit": null, "file": "data/addgene_plasmids/154761.addgene-full.gb" }, @@ -96511,7 +121648,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.E600K", "sequence-type": "addgene-full", "addgene_id": "82850", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82850.addgene-full.gb" }, @@ -96520,7 +121660,10 @@ "plasmid_name": "pDONR221-SLC2A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161268", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161268.addgene-full.gb" }, @@ -96529,7 +121672,10 @@ "plasmid_name": "pDONR221-kcnj11l", "sequence-type": "addgene-full", "addgene_id": "173140", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173140.addgene-full.gb" }, @@ -96538,7 +121684,10 @@ "plasmid_name": "pCS2+ macroH2A1.2-GFP-HA", "sequence-type": "depositor-full", "addgene_id": "30515", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2011.144", + "https://www.ncbi.nlm.nih.gov/pubmed/21552206" + ], "kit": null, "file": "data/addgene_plasmids/30515.depositor-full.gb" }, @@ -96547,7 +121696,10 @@ "plasmid_name": "BRAF_pLX307", "sequence-type": "addgene-full", "addgene_id": "98322", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98322.addgene-full.gb" }, @@ -96556,7 +121708,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF6", "sequence-type": "depositor-full", "addgene_id": "168855", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168855.depositor-full.gb" }, @@ -96565,7 +121720,6 @@ "plasmid_name": "L1-10XQUAS-L4", "sequence-type": "depositor-full", "addgene_id": "41436", - "references": [], "kit": null, "file": "data/addgene_plasmids/41436.depositor-full.gb" }, @@ -96574,7 +121728,10 @@ "plasmid_name": "pLX317-VRK1", "sequence-type": "addgene-full", "addgene_id": "199643", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "file": "data/addgene_plasmids/199643.addgene-full.gb" }, @@ -96583,7 +121740,10 @@ "plasmid_name": "TFORF3003", "sequence-type": "addgene-full", "addgene_id": "144479", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144479.addgene-full.gb" }, @@ -96592,7 +121752,10 @@ "plasmid_name": "pLenti6-DCX-EGFP", "sequence-type": "depositor-full", "addgene_id": "80599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2016.04.020", + "https://www.ncbi.nlm.nih.gov/pubmed/27238282" + ], "kit": null, "file": "data/addgene_plasmids/80599.depositor-full.gb" }, @@ -96601,7 +121764,9 @@ "plasmid_name": "p5E_hs_Glast (JDW 1182)", "sequence-type": "addgene-full", "addgene_id": "224483", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224483.addgene-full.gb" }, @@ -96610,7 +121775,10 @@ "plasmid_name": "pDEST-hPDIb\u2032a\u2032", "sequence-type": "depositor-full", "addgene_id": "60556", - "references": [], + "references": [ + "https://doi.org/10.1007/s12010-013-0140-3", + "https://www.ncbi.nlm.nih.gov/pubmed/23471584" + ], "kit": null, "file": "data/addgene_plasmids/60556.depositor-full.gb" }, @@ -96619,7 +121787,6 @@ "plasmid_name": "R777-E228 Hs.RASA1-nostop", "sequence-type": "depositor-full", "addgene_id": "70512", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -96631,7 +121798,10 @@ "plasmid_name": "pDONR223_SV2C_p.G630S", "sequence-type": "addgene-full", "addgene_id": "81536", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -96643,7 +121813,10 @@ "plasmid_name": "pDONR221-SLC16A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161113", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161113.addgene-full.gb" }, @@ -96652,7 +121825,10 @@ "plasmid_name": "pHAGE-FGFR3-D786N", "sequence-type": "addgene-full", "addgene_id": "116382", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116382.addgene-full.gb" }, @@ -96661,7 +121837,10 @@ "plasmid_name": "pPy-CAG-GFP-IRES-Pac", "sequence-type": "depositor-full", "addgene_id": "48759", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.03.012", + "https://www.ncbi.nlm.nih.gov/pubmed/23582324" + ], "kit": null, "file": "data/addgene_plasmids/48759.depositor-full.gb" }, @@ -96670,7 +121849,10 @@ "plasmid_name": "pDON207 NSP3 K977Q", "sequence-type": "addgene-full", "addgene_id": "180057", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180057.addgene-full.gb" }, @@ -96679,7 +121861,6 @@ "plasmid_name": "R777-E004 Hs.AKT2-nostop", "sequence-type": "depositor-full", "addgene_id": "70288", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -96691,7 +121872,10 @@ "plasmid_name": "actc1b-mKate2-rab34b", "sequence-type": "addgene-full", "addgene_id": "109626", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109626.addgene-full.gb" }, @@ -96700,7 +121884,10 @@ "plasmid_name": "TFORF3226", "sequence-type": "addgene-full", "addgene_id": "144702", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144702.addgene-full.gb" }, @@ -96709,7 +121896,10 @@ "plasmid_name": "pGWB541", "sequence-type": "depositor-full", "addgene_id": "74875", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74875.depositor-full.gb" }, @@ -96718,7 +121908,10 @@ "plasmid_name": "pGC97", "sequence-type": "depositor-full", "addgene_id": "19629", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19629.depositor-full.gb" }, @@ -96727,7 +121920,10 @@ "plasmid_name": "MAC_N_MED13", "sequence-type": "addgene-full", "addgene_id": "111689", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111689.addgene-full.gb" }, @@ -96736,7 +121932,6 @@ "plasmid_name": "pLENTI_TetOn_Hu_BIRC5(WT)", "sequence-type": "addgene-full", "addgene_id": "136348", - "references": [], "kit": null, "file": "data/addgene_plasmids/136348.addgene-full.gb" }, @@ -96745,7 +121940,10 @@ "plasmid_name": "pENTRbasEGFP", "sequence-type": "addgene-full", "addgene_id": "22453", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/22453.addgene-full.gb" }, @@ -96754,7 +121952,10 @@ "plasmid_name": "pDONR223_CYLD_WT", "sequence-type": "addgene-full", "addgene_id": "82326", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82326.addgene-full.gb" }, @@ -96763,7 +121964,6 @@ "plasmid_name": "pDONR221-dyrk1ab", "sequence-type": "addgene-full", "addgene_id": "192726", - "references": [], "kit": null, "file": "data/addgene_plasmids/192726.addgene-full.gb" }, @@ -96772,7 +121972,6 @@ "plasmid_name": "R777-E060 Hs.EIF4EBP3-nostop", "sequence-type": "depositor-full", "addgene_id": "70344", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -96784,7 +121983,10 @@ "plasmid_name": "TARDBP", "sequence-type": "addgene-full", "addgene_id": "156073", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156073.addgene-full.gb" }, @@ -96793,7 +121995,10 @@ "plasmid_name": "PTPRA_Y789F-SHC", "sequence-type": "addgene-full", "addgene_id": "139614", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139614.addgene-full.gb" }, @@ -96802,7 +122007,10 @@ "plasmid_name": "pDONR221_SLC25A38", "sequence-type": "addgene-full", "addgene_id": "132053", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132053.addgene-full.gb" }, @@ -96811,7 +122019,10 @@ "plasmid_name": "pYPQ141C", "sequence-type": "depositor-full", "addgene_id": "69292", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69292.depositor-full.gb" }, @@ -96820,7 +122031,10 @@ "plasmid_name": "p221z-CAS9p-t35s", "sequence-type": "addgene-full", "addgene_id": "118385", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "file": "data/addgene_plasmids/118385.addgene-full.gb" }, @@ -96829,7 +122043,10 @@ "plasmid_name": "pHAGE-FGFR1", "sequence-type": "addgene-full", "addgene_id": "116740", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116740.addgene-full.gb" }, @@ -96838,7 +122055,6 @@ "plasmid_name": "R777-E339 Hs.STK4", "sequence-type": "depositor-full", "addgene_id": "70623", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -96850,7 +122066,10 @@ "plasmid_name": "pAG413GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14190", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -96862,7 +122081,10 @@ "plasmid_name": "pYPQ291-D951A", "sequence-type": "addgene-full", "addgene_id": "129677", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129677.addgene-full.gb" }, @@ -96871,7 +122093,10 @@ "plasmid_name": "pLX304-KDM6A", "sequence-type": "addgene-full", "addgene_id": "203580", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw1026", + "https://www.ncbi.nlm.nih.gov/pubmed/30872525" + ], "kit": null, "file": "data/addgene_plasmids/203580.addgene-full.gb" }, @@ -96880,7 +122105,10 @@ "plasmid_name": "HJP-208-IVS-Syn21-CreAB-NrdJ-1N-WPREUw", "sequence-type": "addgene-full", "addgene_id": "162478", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162478.addgene-full.gb" }, @@ -96889,7 +122117,6 @@ "plasmid_name": "IDG_CLCNKA_OE_1", "sequence-type": "addgene-full", "addgene_id": "161631", - "references": [], "kit": null, "file": "data/addgene_plasmids/161631.addgene-full.gb" }, @@ -96898,7 +122125,10 @@ "plasmid_name": "pSC14", "sequence-type": "addgene-full", "addgene_id": "104788", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104788.addgene-full.gb" }, @@ -96907,7 +122137,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-Turbo-NES-YFP", "sequence-type": "addgene-full", "addgene_id": "127366", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127366.addgene-full.gb" }, @@ -96916,7 +122149,10 @@ "plasmid_name": "pDONR221-SLC47A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161405", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161405.addgene-full.gb" }, @@ -96925,7 +122161,10 @@ "plasmid_name": "pCLASP_Crz1(19A)_CLASP_RGS2membrane", "sequence-type": "addgene-full", "addgene_id": "133085", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.08.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32898473" + ], "kit": null, "file": "data/addgene_plasmids/133085.addgene-full.gb" }, @@ -96934,7 +122173,10 @@ "plasmid_name": "pT2-cryR;lmo2CE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90141", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90141.addgene-full.gb" }, @@ -96943,7 +122185,10 @@ "plasmid_name": "pLenti CMV/TO DEST (775-1)", "sequence-type": "depositor-full", "addgene_id": "17432", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17432.depositor-full.gb" }, @@ -96952,7 +122197,10 @@ "plasmid_name": "pDEST-cDNA5-FRT/TO-3*Flag-APEX2 N-term", "sequence-type": "addgene-full", "addgene_id": "182925", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/182925.addgene-full.gb" }, @@ -96973,7 +122221,6 @@ "plasmid_name": "R777-E206 Hs.PTEN-nostop", "sequence-type": "depositor-full", "addgene_id": "70490", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -96985,7 +122232,10 @@ "plasmid_name": "pHAGE-TBC1D3B-R162Q", "sequence-type": "addgene-full", "addgene_id": "116694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116694.addgene-full.gb" }, @@ -96994,7 +122244,10 @@ "plasmid_name": "pAG426GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14323", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -97006,7 +122259,10 @@ "plasmid_name": "pHAGE-PIK3CD-R927H", "sequence-type": "addgene-full", "addgene_id": "116574", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116574.addgene-full.gb" }, @@ -97015,7 +122271,10 @@ "plasmid_name": "pDONR223_RBM15B_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83010", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83010.addgene-full.gb" }, @@ -97024,7 +122283,10 @@ "plasmid_name": "pDONR223_ARNTL_WT", "sequence-type": "addgene-full", "addgene_id": "82189", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82189.addgene-full.gb" }, @@ -97033,7 +122295,10 @@ "plasmid_name": "TFORF3540", "sequence-type": "depositor-full", "addgene_id": "145016", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145016.depositor-full.gb" }, @@ -97042,7 +122307,10 @@ "plasmid_name": "tetO-ESRRG", "sequence-type": "addgene-full", "addgene_id": "170684", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170684.addgene-full.gb" }, @@ -97051,7 +122319,10 @@ "plasmid_name": "MAC_C_EPHB4", "sequence-type": "addgene-full", "addgene_id": "187768", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187768.addgene-full.gb" }, @@ -97060,7 +122331,10 @@ "plasmid_name": "pDONR223_EIF4E_WT", "sequence-type": "addgene-full", "addgene_id": "82112", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82112.addgene-full.gb" }, @@ -97069,7 +122343,10 @@ "plasmid_name": "p8130 MSCV GFP Puro C-FlagHA", "sequence-type": "addgene-full", "addgene_id": "184521", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184521.addgene-full.gb" }, @@ -97078,7 +122355,10 @@ "plasmid_name": "POFUT2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176960", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176960.addgene-full.gb" }, @@ -97087,7 +122367,10 @@ "plasmid_name": "pSLIK-Neo", "sequence-type": "addgene-full", "addgene_id": "25735", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0606179103", + "https://www.ncbi.nlm.nih.gov/pubmed/16945906" + ], "kit": null, "file": "data/addgene_plasmids/25735.addgene-full.gb" }, @@ -97096,7 +122379,10 @@ "plasmid_name": "pDONR221-NIPAL1", "sequence-type": "addgene-full", "addgene_id": "132267", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132267.addgene-full.gb" }, @@ -97105,7 +122391,10 @@ "plasmid_name": "pDONR221-FOXN1", "sequence-type": "addgene-full", "addgene_id": "101445", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101445.addgene-full.gb" }, @@ -97114,7 +122403,10 @@ "plasmid_name": "pYPQ223 (dAsCpf1-SRDX)", "sequence-type": "addgene-full", "addgene_id": "86209", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "file": "data/addgene_plasmids/86209.addgene-full.gb" }, @@ -97123,7 +122415,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-122", "sequence-type": "depositor-full", "addgene_id": "46673", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46673.depositor-full.gb" }, @@ -97132,7 +122427,6 @@ "plasmid_name": "pLIX403-ccdB-EBFP2", "sequence-type": "addgene-full", "addgene_id": "158562", - "references": [], "kit": null, "file": "data/addgene_plasmids/158562.addgene-full.gb" }, @@ -97141,7 +122435,9 @@ "plasmid_name": "pLX317-SNAI1", "sequence-type": "addgene-full", "addgene_id": "115446", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "file": "data/addgene_plasmids/115446.addgene-full.gb" }, @@ -97150,7 +122446,10 @@ "plasmid_name": "pDONR221_SLC9A7", "sequence-type": "addgene-full", "addgene_id": "132187", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132187.addgene-full.gb" }, @@ -97159,7 +122458,10 @@ "plasmid_name": "pENTR221-CAG.Pro", "sequence-type": "addgene-full", "addgene_id": "79490", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79490.addgene-full.gb" }, @@ -97168,7 +122470,10 @@ "plasmid_name": "pENTR223-SM", "sequence-type": "addgene-full", "addgene_id": "195814", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195814.addgene-full.gb" }, @@ -97177,7 +122482,6 @@ "plasmid_name": "pcDNA3.1-Nanoluc-ccdB", "sequence-type": "addgene-full", "addgene_id": "87070", - "references": [], "kit": null, "file": "data/addgene_plasmids/87070.addgene-full.gb" }, @@ -97186,7 +122490,10 @@ "plasmid_name": "C514-E47: attB5r-Halotag-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162963", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -97198,7 +122505,10 @@ "plasmid_name": "pAG415GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14289", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -97210,7 +122520,6 @@ "plasmid_name": "pAG416GAL-SARS-CoV_PLP", "sequence-type": "addgene-full", "addgene_id": "201942", - "references": [], "kit": null, "file": "data/addgene_plasmids/201942.addgene-full.gb" }, @@ -97219,7 +122528,10 @@ "plasmid_name": "pHAGE-GNAS-T225P", "sequence-type": "addgene-full", "addgene_id": "116406", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116406.addgene-full.gb" }, @@ -97228,7 +122540,6 @@ "plasmid_name": "IDG_PANX2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161697", - "references": [], "kit": null, "file": "data/addgene_plasmids/161697.addgene-full.gb" }, @@ -97237,7 +122548,10 @@ "plasmid_name": "pYPQ220-Ultra", "sequence-type": "addgene-full", "addgene_id": "176889", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2022.780238", + "https://www.ncbi.nlm.nih.gov/pubmed/35174354" + ], "kit": null, "file": "data/addgene_plasmids/176889.addgene-full.gb" }, @@ -97246,7 +122560,6 @@ "plasmid_name": "pX458-Ef1a-dCas9-KRAB-MECP2-H2B-mCherry (CRISPRi)", "sequence-type": "addgene-full", "addgene_id": "175574", - "references": [], "kit": null, "file": "data/addgene_plasmids/175574.addgene-full.gb" }, @@ -97255,7 +122568,10 @@ "plasmid_name": "pDL156", "sequence-type": "addgene-full", "addgene_id": "175920", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175920.addgene-full.gb" }, @@ -97264,7 +122580,10 @@ "plasmid_name": "pLX317 PRDM14", "sequence-type": "addgene-full", "addgene_id": "193682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193682.addgene-full.gb" }, @@ -97273,7 +122592,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aa3.8.4", "sequence-type": "addgene-full", "addgene_id": "136375", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136375.addgene-full.gb" }, @@ -97282,7 +122604,10 @@ "plasmid_name": "MEN2A-V5", "sequence-type": "addgene-full", "addgene_id": "139629", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139629.addgene-full.gb" }, @@ -97291,7 +122616,10 @@ "plasmid_name": "pME minprom_creERT2", "sequence-type": "addgene-full", "addgene_id": "195966", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195966.addgene-full.gb" }, @@ -97300,7 +122628,10 @@ "plasmid_name": "pANG01", "sequence-type": "addgene-full", "addgene_id": "178083", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2021.102608", + "https://www.ncbi.nlm.nih.gov/pubmed/34801582" + ], "kit": null, "file": "data/addgene_plasmids/178083.addgene-full.gb" }, @@ -97309,7 +122640,6 @@ "plasmid_name": "p667-UBC-PKMYT1-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135247", - "references": [], "kit": null, "file": "data/addgene_plasmids/135247.addgene-full.gb" }, @@ -97318,7 +122648,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S4-UD-mCherry", "sequence-type": "addgene-full", "addgene_id": "140306", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140306.addgene-full.gb" }, @@ -97327,7 +122660,10 @@ "plasmid_name": "pAXY0007", "sequence-type": "addgene-full", "addgene_id": "205576", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-023-04950-8", + "https://www.ncbi.nlm.nih.gov/pubmed/37237044" + ], "kit": null, "file": "data/addgene_plasmids/205576.addgene-full.gb" }, @@ -97336,7 +122672,10 @@ "plasmid_name": "pSC27", "sequence-type": "addgene-full", "addgene_id": "104801", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104801.addgene-full.gb" }, @@ -97345,7 +122684,10 @@ "plasmid_name": "pDEST47-CYFIP1.GFP", "sequence-type": "addgene-full", "addgene_id": "109139", - "references": [], + "references": [ + "https://doi.org/10.1038/tp.2014.16", + "https://www.ncbi.nlm.nih.gov/pubmed/24667445" + ], "kit": null, "file": "data/addgene_plasmids/109139.addgene-full.gb" }, @@ -97354,7 +122696,10 @@ "plasmid_name": "pMx/ATP11C(E184Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209263", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209263.addgene-full.gb" }, @@ -97363,7 +122708,10 @@ "plasmid_name": "pTW072M", "sequence-type": "addgene-full", "addgene_id": "115960", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115960.addgene-full.gb" }, @@ -97372,7 +122720,6 @@ "plasmid_name": "pENTR-d4Venus", "sequence-type": "addgene-full", "addgene_id": "139552", - "references": [], "kit": null, "file": "data/addgene_plasmids/139552.addgene-full.gb" }, @@ -97381,7 +122728,10 @@ "plasmid_name": "pDONR221-SLC25A11_STOP", "sequence-type": "depositor-full", "addgene_id": "161192", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161192.depositor-full.gb" }, @@ -97390,7 +122740,10 @@ "plasmid_name": "pLX307 LacZ", "sequence-type": "addgene-full", "addgene_id": "117730", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117730.addgene-full.gb" }, @@ -97399,7 +122752,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0386-luc2", "sequence-type": "addgene-full", "addgene_id": "214623", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214623.addgene-full.gb" }, @@ -97420,7 +122776,10 @@ "plasmid_name": "pDONR223_DDIT4_WT", "sequence-type": "addgene-full", "addgene_id": "82254", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82254.addgene-full.gb" }, @@ -97429,7 +122788,10 @@ "plasmid_name": "pDONR221-TMEM165_STOP", "sequence-type": "addgene-full", "addgene_id": "161438", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161438.addgene-full.gb" }, @@ -97438,7 +122800,10 @@ "plasmid_name": "pAG303GAL-ccdB-EGFP", "sequence-type": "addgene-full", "addgene_id": "14181", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -97450,7 +122815,6 @@ "plasmid_name": "R777-E290 Hs.RPS6KA1-nostop", "sequence-type": "depositor-full", "addgene_id": "70574", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -97462,7 +122826,10 @@ "plasmid_name": "pWS498", "sequence-type": "addgene-full", "addgene_id": "123040", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123040.addgene-full.gb" }, @@ -97471,7 +122838,10 @@ "plasmid_name": "pDONR221_SLC35F2", "sequence-type": "addgene-full", "addgene_id": "132121", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132121.addgene-full.gb" }, @@ -97480,7 +122850,9 @@ "plasmid_name": "pDONR223-EGFP", "sequence-type": "addgene-full", "addgene_id": "209057", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209057.addgene-full.gb" }, @@ -97489,7 +122861,10 @@ "plasmid_name": "pHAGE-PIK3CA-Y1021C", "sequence-type": "addgene-full", "addgene_id": "116549", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116549.addgene-full.gb" }, @@ -97498,7 +122873,10 @@ "plasmid_name": "MX01", "sequence-type": "addgene-full", "addgene_id": "158624", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abc1251", + "https://www.ncbi.nlm.nih.gov/pubmed/33158864" + ], "kit": null, "file": "data/addgene_plasmids/158624.addgene-full.gb" }, @@ -97507,7 +122885,10 @@ "plasmid_name": "pEN_TmiRc3_shNT", "sequence-type": "depositor-full", "addgene_id": "81067", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "file": "data/addgene_plasmids/81067.depositor-full.gb" }, @@ -97516,7 +122897,6 @@ "plasmid_name": "BRAF - W531C in pENTR", "sequence-type": "addgene-full", "addgene_id": "216613", - "references": [], "kit": null, "file": "data/addgene_plasmids/216613.addgene-full.gb" }, @@ -97525,7 +122905,10 @@ "plasmid_name": "pMDJ113 - pEXP(HygroR, 5605)[Phsp-16.41 |Cre recombinase (PATCs) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159809", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159809.addgene-full.gb" }, @@ -97534,7 +122917,10 @@ "plasmid_name": "pENTR223-PRDX5E80K", "sequence-type": "addgene-full", "addgene_id": "98692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "file": "data/addgene_plasmids/98692.addgene-full.gb" }, @@ -97543,7 +122929,10 @@ "plasmid_name": "pSS02:cyt-Peredox-mCherry", "sequence-type": "addgene-full", "addgene_id": "161743", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.20.00241", + "https://www.ncbi.nlm.nih.gov/pubmed/32796121" + ], "kit": null, "file": "data/addgene_plasmids/161743.addgene-full.gb" }, @@ -97552,7 +122941,6 @@ "plasmid_name": "pLgw ELK1Y158A-V5-EcoDam", "sequence-type": "addgene-full", "addgene_id": "98609", - "references": [], "kit": null, "file": "data/addgene_plasmids/98609.addgene-full.gb" }, @@ -97561,7 +122949,10 @@ "plasmid_name": "pDONR223_OTUD6A_p.V211M", "sequence-type": "addgene-full", "addgene_id": "81366", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -97573,7 +122964,10 @@ "plasmid_name": "MAC_N_PAX8", "sequence-type": "addgene-full", "addgene_id": "167788", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167788.addgene-full.gb" }, @@ -97582,7 +122976,10 @@ "plasmid_name": "pENTR-R4R3-2xmEGFP-C", "sequence-type": "addgene-full", "addgene_id": "113750", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -97594,7 +122991,10 @@ "plasmid_name": "pHAGE-PTEN-R173C", "sequence-type": "addgene-full", "addgene_id": "116632", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116632.addgene-full.gb" }, @@ -97603,7 +123003,10 @@ "plasmid_name": "pPB-VASA-tdTomato-pNeo", "sequence-type": "addgene-full", "addgene_id": "141030", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141030.addgene-full.gb" }, @@ -97612,7 +123015,10 @@ "plasmid_name": "mNeonGreen-JIP4", "sequence-type": "addgene-full", "addgene_id": "164621", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164621.addgene-full.gb" }, @@ -97621,7 +123027,10 @@ "plasmid_name": "YFC43", "sequence-type": "addgene-full", "addgene_id": "89488", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0046907", + "https://www.ncbi.nlm.nih.gov/pubmed/23056524" + ], "kit": null, "file": "data/addgene_plasmids/89488.addgene-full.gb" }, @@ -97630,7 +123039,10 @@ "plasmid_name": "pSA110", "sequence-type": "depositor-full", "addgene_id": "59784", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.115048", + "https://www.ncbi.nlm.nih.gov/pubmed/25377555" + ], "kit": null, "file": "data/addgene_plasmids/59784.depositor-full.gb" }, @@ -97639,7 +123051,10 @@ "plasmid_name": "pENTR223-B-GD-RF1", "sequence-type": "addgene-full", "addgene_id": "195829", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195829.addgene-full.gb" }, @@ -97648,7 +123063,9 @@ "plasmid_name": "pDONR207-OEP7(1\u201350)", "sequence-type": "addgene-full", "addgene_id": "100601", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28634853" + ], "kit": null, "file": "data/addgene_plasmids/100601.addgene-full.gb" }, @@ -97657,7 +123074,10 @@ "plasmid_name": "pCellFree_G03 CYP2D6", "sequence-type": "addgene-full", "addgene_id": "67090", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "file": "data/addgene_plasmids/67090.addgene-full.gb" }, @@ -97666,7 +123086,10 @@ "plasmid_name": "5'-3xFLAG L3mbtl3+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212059", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212059.addgene-full.gb" }, @@ -97675,7 +123098,10 @@ "plasmid_name": "pDONR221-SLC35A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161289", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161289.addgene-full.gb" }, @@ -97684,7 +123110,10 @@ "plasmid_name": "BCL6-GFP R28A in Artichoke", "sequence-type": "addgene-full", "addgene_id": "169933", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2925-1", + "https://www.ncbi.nlm.nih.gov/pubmed/33208943" + ], "kit": null, "file": "data/addgene_plasmids/169933.addgene-full.gb" }, @@ -97693,7 +123122,6 @@ "plasmid_name": "R777-E156 Hs.PDGFRA-nostop", "sequence-type": "depositor-full", "addgene_id": "70440", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -97705,7 +123133,10 @@ "plasmid_name": "TFORF3022", "sequence-type": "addgene-full", "addgene_id": "144498", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144498.addgene-full.gb" }, @@ -97714,7 +123145,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf7a", "sequence-type": "addgene-full", "addgene_id": "158375", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158375.addgene-full.gb" }, @@ -97723,7 +123157,10 @@ "plasmid_name": "pEN_TT 3xFLAG-Linker", "sequence-type": "addgene-full", "addgene_id": "192305", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192305.addgene-full.gb" }, @@ -97732,7 +123169,10 @@ "plasmid_name": "pGP8GF-ZmAFB2/3 a", "sequence-type": "addgene-full", "addgene_id": "188423", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188423.addgene-full.gb" }, @@ -97741,7 +123181,10 @@ "plasmid_name": "TFORF3302", "sequence-type": "addgene-full", "addgene_id": "144778", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144778.addgene-full.gb" }, @@ -97750,7 +123193,10 @@ "plasmid_name": "pTol2-hsp70l:Cas9-t2A-GFP, 5xU6:sgRNA", "sequence-type": "addgene-full", "addgene_id": "108871", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt.4103", + "https://www.ncbi.nlm.nih.gov/pubmed/29608178" + ], "kit": null, "file": "data/addgene_plasmids/108871.addgene-full.gb" }, @@ -97759,7 +123205,9 @@ "plasmid_name": "pMpGWB115", "sequence-type": "depositor-full", "addgene_id": "68569", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68569.depositor-full.gb" }, @@ -97768,7 +123216,10 @@ "plasmid_name": "pEBTetBl-CLIP-STIL", "sequence-type": "addgene-full", "addgene_id": "136844", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136844.addgene-full.gb" }, @@ -97777,7 +123228,6 @@ "plasmid_name": "pTAU-C-DM", "sequence-type": "addgene-full", "addgene_id": "111231", - "references": [], "kit": null, "file": "data/addgene_plasmids/111231.addgene-full.gb" }, @@ -97786,7 +123236,10 @@ "plasmid_name": "pHAGE-ERBB3-V104M", "sequence-type": "addgene-full", "addgene_id": "116363", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116363.addgene-full.gb" }, @@ -97795,7 +123248,10 @@ "plasmid_name": "TFORF3381", "sequence-type": "addgene-full", "addgene_id": "144857", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144857.addgene-full.gb" }, @@ -97804,7 +123260,10 @@ "plasmid_name": "pDONR221_MFSD1", "sequence-type": "addgene-full", "addgene_id": "131916", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131916.addgene-full.gb" }, @@ -97813,7 +123272,10 @@ "plasmid_name": "pDEST-V2-ORF", "sequence-type": "depositor-full", "addgene_id": "73636", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaf0793", + "https://www.ncbi.nlm.nih.gov/pubmed/27405979" + ], "kit": null, "file": "data/addgene_plasmids/73636.depositor-full.gb" }, @@ -97822,7 +123284,10 @@ "plasmid_name": "actc1b-mKate2-RhoAb", "sequence-type": "addgene-full", "addgene_id": "109527", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109527.addgene-full.gb" }, @@ -97831,7 +123296,10 @@ "plasmid_name": "pEntry_MERS-CoV-Envelope", "sequence-type": "addgene-full", "addgene_id": "168831", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168831.addgene-full.gb" }, @@ -97840,7 +123308,10 @@ "plasmid_name": "pDONR221-SLC22A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161212", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161212.addgene-full.gb" }, @@ -97849,7 +123320,10 @@ "plasmid_name": "POLD1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98358", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98358.addgene-full.gb" }, @@ -97858,7 +123332,10 @@ "plasmid_name": "pNJB98", "sequence-type": "depositor-full", "addgene_id": "51520", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51520.depositor-full.gb" }, @@ -97867,7 +123344,10 @@ "plasmid_name": "pDONR223_SPOP_p.F133S", "sequence-type": "addgene-full", "addgene_id": "81637", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -97879,7 +123359,10 @@ "plasmid_name": "EF1a-dCas9-KRAB-GFP backbone", "sequence-type": "addgene-full", "addgene_id": "194281", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2023.107068", + "https://www.ncbi.nlm.nih.gov/pubmed/37534178" + ], "kit": null, "file": "data/addgene_plasmids/194281.addgene-full.gb" }, @@ -97888,7 +123371,10 @@ "plasmid_name": "PB-TAC-EB-C5", "sequence-type": "depositor-full", "addgene_id": "80485", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "file": "data/addgene_plasmids/80485.depositor-full.gb" }, @@ -97897,7 +123383,10 @@ "plasmid_name": "pFPL-Gh", "sequence-type": "depositor-full", "addgene_id": "61648", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-05-14-0144-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/25390188" + ], "kit": null, "file": "data/addgene_plasmids/61648.depositor-full.gb" }, @@ -97906,7 +123395,9 @@ "plasmid_name": "pDONR221-FKBP1B(3of4)", "sequence-type": "addgene-full", "addgene_id": "166174", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166174.addgene-full.gb" }, @@ -97915,7 +123406,10 @@ "plasmid_name": "pGCS-N1(6xMYC)", "sequence-type": "addgene-full", "addgene_id": "85718", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -97927,7 +123421,10 @@ "plasmid_name": "p3E-rab44", "sequence-type": "addgene-full", "addgene_id": "109713", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109713.addgene-full.gb" }, @@ -97936,7 +123433,10 @@ "plasmid_name": "TFORF3161", "sequence-type": "addgene-full", "addgene_id": "144637", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144637.addgene-full.gb" }, @@ -97945,7 +123445,10 @@ "plasmid_name": "pDEST 544-PHL2", "sequence-type": "addgene-full", "addgene_id": "118672", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118672.addgene-full.gb" }, @@ -97954,7 +123457,10 @@ "plasmid_name": "pDONR223_IDH2_p.E268D", "sequence-type": "addgene-full", "addgene_id": "81403", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -97966,7 +123472,10 @@ "plasmid_name": "pMuLE ENTR CMV iRFP L3-L2", "sequence-type": "depositor-full", "addgene_id": "62159", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62159.depositor-full.gb" }, @@ -97975,7 +123484,10 @@ "plasmid_name": "pEPYCdKN0010", "sequence-type": "addgene-full", "addgene_id": "196151", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196151.addgene-full.gb" }, @@ -97984,7 +123496,9 @@ "plasmid_name": "pPB-cT3G-cERP2-FIGLA", "sequence-type": "addgene-full", "addgene_id": "222929", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "file": "data/addgene_plasmids/222929.addgene-full.gb" }, @@ -97993,7 +123507,9 @@ "plasmid_name": "pFLIP36", "sequence-type": "depositor-full", "addgene_id": "65504", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65504.depositor-full.gb" }, @@ -98002,7 +123518,10 @@ "plasmid_name": "pDONR223_RB1_WT", "sequence-type": "addgene-full", "addgene_id": "81857", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -98014,7 +123533,10 @@ "plasmid_name": "pCWXPGR-pTF-Wnt3a", "sequence-type": "addgene-full", "addgene_id": "114287", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "file": "data/addgene_plasmids/114287.addgene-full.gb" }, @@ -98023,7 +123545,10 @@ "plasmid_name": "252 pTol2-MTDest", "sequence-type": "depositor-full", "addgene_id": "73485", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/73485.depositor-full.gb" }, @@ -98032,7 +123557,10 @@ "plasmid_name": "pDONR221-kcnk2b", "sequence-type": "addgene-full", "addgene_id": "208984", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208984.addgene-full.gb" }, @@ -98041,7 +123569,10 @@ "plasmid_name": "pExp_TRE:EBFP2", "sequence-type": "depositor-full", "addgene_id": "51793", - "references": [], + "references": [ + "https://doi.org/10.1021/sb500263b", + "https://www.ncbi.nlm.nih.gov/pubmed/25369267" + ], "kit": null, "file": "data/addgene_plasmids/51793.depositor-full.gb" }, @@ -98050,7 +123581,10 @@ "plasmid_name": "pHAGE-BRAF-G469V", "sequence-type": "addgene-full", "addgene_id": "116157", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116157.addgene-full.gb" }, @@ -98059,7 +123593,6 @@ "plasmid_name": "R777-E110 Hs.IRS1-nostop", "sequence-type": "depositor-full", "addgene_id": "70394", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -98071,7 +123604,10 @@ "plasmid_name": "AAEL010313 SPR", "sequence-type": "addgene-full", "addgene_id": "115385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115385.addgene-full.gb" }, @@ -98080,7 +123616,10 @@ "plasmid_name": "pCM3.35", "sequence-type": "depositor-full", "addgene_id": "19404", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19404.depositor-full.gb" }, @@ -98089,7 +123628,6 @@ "plasmid_name": "Hs.KRAS4a G12V", "sequence-type": "depositor-full", "addgene_id": "83169", - "references": [], "kit": null, "file": "data/addgene_plasmids/83169.depositor-full.gb" }, @@ -98098,7 +123636,10 @@ "plasmid_name": "pDONR223_RASA1_WT", "sequence-type": "addgene-full", "addgene_id": "81778", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -98110,7 +123651,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway mmu SE-Irf2bpl G", "sequence-type": "addgene-full", "addgene_id": "89376", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89376.addgene-full.gb" }, @@ -98119,7 +123663,10 @@ "plasmid_name": "pLenti PGK Puro DEST (w529-2)", "sequence-type": "addgene-full", "addgene_id": "19068", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/19068.addgene-full.gb" }, @@ -98128,7 +123675,10 @@ "plasmid_name": "pAG306GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14140", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -98140,7 +123690,10 @@ "plasmid_name": "KO901: pMVP (L5-L4) Blast-P2A", "sequence-type": "addgene-full", "addgene_id": "121715", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121715.addgene-full.gb" }, @@ -98149,7 +123702,10 @@ "plasmid_name": "pDONR223_KIF2B_p.E161G", "sequence-type": "addgene-full", "addgene_id": "81498", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -98161,7 +123717,10 @@ "plasmid_name": "pDONR223_HAVCR2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82965", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82965.addgene-full.gb" }, @@ -98170,7 +123729,10 @@ "plasmid_name": "TFORF3442", "sequence-type": "addgene-full", "addgene_id": "144918", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144918.addgene-full.gb" }, @@ -98179,7 +123741,10 @@ "plasmid_name": "RBBP6", "sequence-type": "addgene-full", "addgene_id": "155879", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155879.addgene-full.gb" }, @@ -98188,7 +123753,10 @@ "plasmid_name": "pGL2084", "sequence-type": "addgene-full", "addgene_id": "137726", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1003886", + "https://www.ncbi.nlm.nih.gov/pubmed/24453978" + ], "kit": null, "file": "data/addgene_plasmids/137726.addgene-full.gb" }, @@ -98197,7 +123765,10 @@ "plasmid_name": "pDONR223_WNK3_p.T237M", "sequence-type": "addgene-full", "addgene_id": "81691", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -98209,7 +123780,10 @@ "plasmid_name": "p8215 pHAGE N-V5 PTPN14 \u0394PPXY1/2", "sequence-type": "addgene-full", "addgene_id": "221646", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "file": "data/addgene_plasmids/221646.addgene-full.gb" }, @@ -98218,7 +123792,10 @@ "plasmid_name": "5'-3xFLAG Mef2d-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212064", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212064.addgene-full.gb" }, @@ -98227,7 +123804,10 @@ "plasmid_name": "pDONR223_KEAP1_WT", "sequence-type": "addgene-full", "addgene_id": "81925", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -98239,7 +123819,10 @@ "plasmid_name": "pMXs-Klf4-IP", "sequence-type": "addgene-full", "addgene_id": "15920", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.07.024", + "https://www.ncbi.nlm.nih.gov/pubmed/16904174" + ], "kit": null, "file": "data/addgene_plasmids/15920.addgene-full.gb" }, @@ -98248,7 +123831,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-nsp8", "sequence-type": "addgene-full", "addgene_id": "168897", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168897.addgene-full.gb" }, @@ -98257,7 +123843,9 @@ "plasmid_name": "pMpGWB405", "sequence-type": "depositor-full", "addgene_id": "68670", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68670.depositor-full.gb" }, @@ -98266,7 +123854,10 @@ "plasmid_name": "p3E-Rac1", "sequence-type": "addgene-full", "addgene_id": "109581", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109581.addgene-full.gb" }, @@ -98275,7 +123866,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-ERBB2 NLS zeo", "sequence-type": "addgene-full", "addgene_id": "192338", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192338.addgene-full.gb" }, @@ -98284,7 +123878,10 @@ "plasmid_name": "TFORF3269", "sequence-type": "addgene-full", "addgene_id": "144745", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144745.addgene-full.gb" }, @@ -98293,7 +123890,10 @@ "plasmid_name": "p3E-rab10", "sequence-type": "addgene-full", "addgene_id": "109661", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109661.addgene-full.gb" }, @@ -98302,7 +123902,6 @@ "plasmid_name": "pENTR223 Rab11A S20V-STOP", "sequence-type": "addgene-full", "addgene_id": "228031", - "references": [], "kit": null, "file": "data/addgene_plasmids/228031.addgene-full.gb" }, @@ -98311,7 +123910,10 @@ "plasmid_name": "pDONR221-SLC22A23_STOP", "sequence-type": "addgene-full", "addgene_id": "161154", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161154.addgene-full.gb" }, @@ -98320,7 +123922,10 @@ "plasmid_name": "pHWBF09EC", "sequence-type": "addgene-full", "addgene_id": "130829", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130829.addgene-full.gb" }, @@ -98329,7 +123934,10 @@ "plasmid_name": "pDONR223_FBXW7_p.R465H", "sequence-type": "addgene-full", "addgene_id": "81571", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -98341,7 +123949,10 @@ "plasmid_name": "pDONR223_SERPINB5_p.A42F", "sequence-type": "addgene-full", "addgene_id": "82738", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -98353,7 +123964,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.Q137L", "sequence-type": "addgene-full", "addgene_id": "82817", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82817.addgene-full.gb" }, @@ -98362,7 +123976,10 @@ "plasmid_name": "p35S-GW-3Avi", "sequence-type": "addgene-full", "addgene_id": "127918", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-18832-8", + "https://www.ncbi.nlm.nih.gov/pubmed/33037196" + ], "kit": null, "file": "data/addgene_plasmids/127918.addgene-full.gb" }, @@ -98371,7 +123988,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Centrobin", "sequence-type": "addgene-full", "addgene_id": "136879", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136879.addgene-full.gb" }, @@ -98380,7 +124000,10 @@ "plasmid_name": "pcDNA3_HTR2A-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194368", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194368.addgene-full.gb" }, @@ -98389,7 +124012,10 @@ "plasmid_name": "eA3Ai-Cas9n-UGI-NLS", "sequence-type": "addgene-full", "addgene_id": "207165", - "references": [], + "references": [ + "https://doi.org/10.1089/crispr.2023.0027", + "https://www.ncbi.nlm.nih.gov/pubmed/37672599" + ], "kit": null, "file": "data/addgene_plasmids/207165.addgene-full.gb" }, @@ -98398,7 +124024,6 @@ "plasmid_name": "p426 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58556", - "references": [], "kit": null, "file": "data/addgene_plasmids/58556.depositor-full.gb" }, @@ -98407,7 +124032,10 @@ "plasmid_name": "pLenti6/V5-DEST-p110 CUX1", "sequence-type": "depositor-full", "addgene_id": "100816", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2164-14-258", + "https://www.ncbi.nlm.nih.gov/pubmed/23590133" + ], "kit": null, "file": "data/addgene_plasmids/100816.depositor-full.gb" }, @@ -98416,7 +124044,10 @@ "plasmid_name": "RAB10_pLX307", "sequence-type": "addgene-full", "addgene_id": "98365", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98365.addgene-full.gb" }, @@ -98425,7 +124056,10 @@ "plasmid_name": "pGCS-C2m(3xHA)", "sequence-type": "addgene-full", "addgene_id": "85725", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -98437,7 +124071,10 @@ "plasmid_name": "pMpGE_En03-gR082", "sequence-type": "addgene-full", "addgene_id": "188551", - "references": [], + "references": [ + "https://doi.org/10.5511/plantbiotechnology.22.0810a", + "https://www.ncbi.nlm.nih.gov/pubmed/37283617" + ], "kit": null, "file": "data/addgene_plasmids/188551.addgene-full.gb" }, @@ -98446,7 +124083,6 @@ "plasmid_name": "psp-161-si2(sip1090)", "sequence-type": "depositor-full", "addgene_id": "58802", - "references": [], "kit": null, "file": "data/addgene_plasmids/58802.depositor-full.gb" }, @@ -98455,7 +124091,9 @@ "plasmid_name": "pDEST17-His10-Smt3-DDX5(kf)-SNAP", "sequence-type": "addgene-full", "addgene_id": "166149", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166149.addgene-full.gb" }, @@ -98464,7 +124102,10 @@ "plasmid_name": "pAG306GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14259", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -98476,7 +124117,10 @@ "plasmid_name": "pRSET-Cm-CspA2", "sequence-type": "addgene-full", "addgene_id": "215399", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2319499121", + "https://www.ncbi.nlm.nih.gov/pubmed/38814867" + ], "kit": null, "file": "data/addgene_plasmids/215399.addgene-full.gb" }, @@ -98485,7 +124129,10 @@ "plasmid_name": "IG806: pMVP (L3-L2) pA; RIP::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121807", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121807.addgene-full.gb" }, @@ -98494,7 +124141,10 @@ "plasmid_name": "pcDNA5/FRT/TO-TRPT1", "sequence-type": "addgene-full", "addgene_id": "184244", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac711", + "https://www.ncbi.nlm.nih.gov/pubmed/36018800" + ], "kit": null, "file": "data/addgene_plasmids/184244.addgene-full.gb" }, @@ -98503,7 +124153,10 @@ "plasmid_name": "pME-APEX2-NS", "sequence-type": "depositor-full", "addgene_id": "67669", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67669.depositor-full.gb" }, @@ -98512,7 +124165,10 @@ "plasmid_name": "pJ414-PCY1:S495A", "sequence-type": "addgene-full", "addgene_id": "98151", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.8b00050", + "https://www.ncbi.nlm.nih.gov/pubmed/29377663" + ], "kit": null, "file": "data/addgene_plasmids/98151.addgene-full.gb" }, @@ -98521,7 +124177,9 @@ "plasmid_name": "pPB-cT3G-cERP2-HMGB3", "sequence-type": "addgene-full", "addgene_id": "222540", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222540.addgene-full.gb" }, @@ -98530,7 +124188,10 @@ "plasmid_name": "pGBKT7-GW", "sequence-type": "addgene-full", "addgene_id": "61703", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2009.04048.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19843313" + ], "kit": null, "file": "data/addgene_plasmids/61703.addgene-full.gb" }, @@ -98539,7 +124200,10 @@ "plasmid_name": "p7139 pHAGE-P-CMVt-N-HA-GAW-PHKG2", "sequence-type": "addgene-full", "addgene_id": "100159", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100159.addgene-full.gb" }, @@ -98548,7 +124212,10 @@ "plasmid_name": "A1-LCD-14N-4Q+18G", "sequence-type": "addgene-full", "addgene_id": "178694", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178694.addgene-full.gb" }, @@ -98557,7 +124224,10 @@ "plasmid_name": "pQLinkHD-SYNZIP1", "sequence-type": "addgene-full", "addgene_id": "80647", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "file": "data/addgene_plasmids/80647.addgene-full.gb" }, @@ -98566,7 +124236,10 @@ "plasmid_name": "pYZ694", "sequence-type": "addgene-full", "addgene_id": "132956", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkaa329", + "https://www.ncbi.nlm.nih.gov/pubmed/32374858" + ], "kit": null, "file": "data/addgene_plasmids/132956.addgene-full.gb" }, @@ -98575,7 +124248,6 @@ "plasmid_name": "pLEX_305", "sequence-type": "addgene-full", "addgene_id": "41390", - "references": [], "kit": null, "file": "data/addgene_plasmids/41390.addgene-full.gb" }, @@ -98584,7 +124256,10 @@ "plasmid_name": "pEntry_HCoV-OC43-Hemagglutinin-esterase", "sequence-type": "addgene-full", "addgene_id": "168943", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168943.addgene-full.gb" }, @@ -98593,7 +124268,10 @@ "plasmid_name": "TFORF3095", "sequence-type": "addgene-full", "addgene_id": "144571", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144571.addgene-full.gb" }, @@ -98602,7 +124280,10 @@ "plasmid_name": "pJOG562", "sequence-type": "addgene-full", "addgene_id": "105340", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -98614,7 +124295,10 @@ "plasmid_name": "pDONR223_TCF7L2_WT", "sequence-type": "addgene-full", "addgene_id": "81745", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -98626,7 +124310,10 @@ "plasmid_name": "pMMACE DEST CMV H2B iRFP", "sequence-type": "addgene-full", "addgene_id": "206253", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206253.addgene-full.gb" }, @@ -98635,7 +124322,10 @@ "plasmid_name": "pID3.01B", "sequence-type": "depositor-full", "addgene_id": "22720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2005.11.046", + "https://www.ncbi.nlm.nih.gov/pubmed/16499902" + ], "kit": null, "file": "data/addgene_plasmids/22720.depositor-full.gb" }, @@ -98644,7 +124334,9 @@ "plasmid_name": "pME-Myc-BioID2-MCS1 (JDW 1095)", "sequence-type": "addgene-full", "addgene_id": "224510", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224510.addgene-full.gb" }, @@ -98653,7 +124345,10 @@ "plasmid_name": "R620-M15-303: CMV51p> SARS-CoV-2 S(1-1213)-2P-T4f-His6 D614G", "sequence-type": "addgene-full", "addgene_id": "170201", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/170201.addgene-full.gb" }, @@ -98662,7 +124357,10 @@ "plasmid_name": "pDONR221-SLC5A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161360", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161360.addgene-full.gb" }, @@ -98671,7 +124369,10 @@ "plasmid_name": "pDONR221-SLC37A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161080", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161080.addgene-full.gb" }, @@ -98680,7 +124381,10 @@ "plasmid_name": "pDONR223_LAP3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82958", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82958.addgene-full.gb" }, @@ -98689,7 +124393,9 @@ "plasmid_name": "pLV-REPORT (PGK) NanoLuc", "sequence-type": "addgene-full", "addgene_id": "208576", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/208576.addgene-full.gb" }, @@ -98698,7 +124404,10 @@ "plasmid_name": "pDONR223_NKX2-1", "sequence-type": "addgene-full", "addgene_id": "221472", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221472.addgene-full.gb" }, @@ -98707,7 +124416,10 @@ "plasmid_name": "HE302: pMVP (L5-L4) RIP", "sequence-type": "addgene-full", "addgene_id": "121728", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121728.addgene-full.gb" }, @@ -98716,7 +124428,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir44-wt", "sequence-type": "depositor-full", "addgene_id": "46709", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46709.depositor-full.gb" }, @@ -98725,7 +124440,10 @@ "plasmid_name": "pMartini Gate A R2-R1", "sequence-type": "depositor-full", "addgene_id": "36428", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "file": "data/addgene_plasmids/36428.depositor-full.gb" }, @@ -98734,7 +124452,10 @@ "plasmid_name": "TFORF3215", "sequence-type": "addgene-full", "addgene_id": "144691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144691.addgene-full.gb" }, @@ -98743,7 +124464,10 @@ "plasmid_name": "pDONR221-SLC22A20P_STOP", "sequence-type": "depositor-full", "addgene_id": "161142", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161142.depositor-full.gb" }, @@ -98752,7 +124476,10 @@ "plasmid_name": "TFORF3449", "sequence-type": "addgene-full", "addgene_id": "144925", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144925.addgene-full.gb" }, @@ -98761,7 +124488,10 @@ "plasmid_name": "pHAGE-BRAF-Y656D", "sequence-type": "addgene-full", "addgene_id": "116211", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116211.addgene-full.gb" }, @@ -98770,7 +124500,10 @@ "plasmid_name": "pDONR223_CCNH_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82956", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82956.addgene-full.gb" }, @@ -98779,7 +124512,10 @@ "plasmid_name": "IH401: pMVP (L5-L4) CMV promoter", "sequence-type": "addgene-full", "addgene_id": "121726", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121726.addgene-full.gb" }, @@ -98788,7 +124524,10 @@ "plasmid_name": "pXL-CAG-LAP2-NLG1", "sequence-type": "depositor-full", "addgene_id": "43924", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0052823", + "https://www.ncbi.nlm.nih.gov/pubmed/23457442" + ], "kit": null, "file": "data/addgene_plasmids/43924.depositor-full.gb" }, @@ -98797,7 +124536,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP2_nostop", "sequence-type": "addgene-full", "addgene_id": "168519", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168519.addgene-full.gb" }, @@ -98806,7 +124548,9 @@ "plasmid_name": "p3E-CFP-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82591", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82591.depositor-full.gb" }, @@ -98815,7 +124559,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK14_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158172", - "references": [], "kit": null, "file": "data/addgene_plasmids/158172.addgene-full.gb" }, @@ -98824,7 +124567,10 @@ "plasmid_name": "pCENTR_MGGAGM", "sequence-type": "addgene-full", "addgene_id": "216145", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216145.addgene-full.gb" }, @@ -98833,7 +124579,10 @@ "plasmid_name": "pMLS262", "sequence-type": "depositor-full", "addgene_id": "73718", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.184275", + "https://www.ncbi.nlm.nih.gov/pubmed/26837755" + ], "kit": null, "file": "data/addgene_plasmids/73718.depositor-full.gb" }, @@ -98842,7 +124591,10 @@ "plasmid_name": "pEntry_MERS-CoV-ORF4b", "sequence-type": "depositor-full", "addgene_id": "168829", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168829.depositor-full.gb" }, @@ -98851,7 +124603,10 @@ "plasmid_name": "pDONR-IAA8_no stop", "sequence-type": "depositor-full", "addgene_id": "83874", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83874.depositor-full.gb" }, @@ -98860,7 +124615,10 @@ "plasmid_name": "WT-short-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "192102", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/192102.addgene-full.gb" }, @@ -98869,7 +124627,10 @@ "plasmid_name": "pMM4_14L", "sequence-type": "addgene-full", "addgene_id": "183063", - "references": [], + "references": [ + "https://doi.org/10.1186/s12934-022-01938-7", + "https://www.ncbi.nlm.nih.gov/pubmed/36243715" + ], "kit": null, "file": "data/addgene_plasmids/183063.addgene-full.gb" }, @@ -98878,7 +124639,10 @@ "plasmid_name": "pYPQ152", "sequence-type": "addgene-full", "addgene_id": "69303", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69303.addgene-full.gb" }, @@ -98887,7 +124651,9 @@ "plasmid_name": "p3E-SGTAP no-pA", "sequence-type": "addgene-full", "addgene_id": "82599", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82599.addgene-full.gb" }, @@ -98896,7 +124662,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NIM1K_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189892", - "references": [], "kit": null, "file": "data/addgene_plasmids/189892.addgene-full.gb" }, @@ -98905,7 +124670,6 @@ "plasmid_name": "pMK33-V5-TurboID-GW", "sequence-type": "addgene-full", "addgene_id": "196282", - "references": [], "kit": null, "file": "data/addgene_plasmids/196282.addgene-full.gb" }, @@ -98914,7 +124678,10 @@ "plasmid_name": "p7141 pHAGE-P-CMVt-N-HA-GAW-MUS81", "sequence-type": "addgene-full", "addgene_id": "100157", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100157.addgene-full.gb" }, @@ -98923,7 +124690,10 @@ "plasmid_name": "pDONR223_ZNF454_WT", "sequence-type": "addgene-full", "addgene_id": "81864", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -98935,7 +124705,10 @@ "plasmid_name": "pHAGE-BRAF-H585Y", "sequence-type": "addgene-full", "addgene_id": "116164", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116164.addgene-full.gb" }, @@ -98944,7 +124717,10 @@ "plasmid_name": "CSTF1", "sequence-type": "addgene-full", "addgene_id": "155485", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155485.addgene-full.gb" }, @@ -98953,7 +124729,10 @@ "plasmid_name": "pAC1808_pmax-RBFOX1N-FRB-C", "sequence-type": "addgene-full", "addgene_id": "118641", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118641.addgene-full.gb" }, @@ -98962,7 +124741,10 @@ "plasmid_name": "TFORF3128", "sequence-type": "addgene-full", "addgene_id": "144604", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144604.addgene-full.gb" }, @@ -98971,7 +124753,10 @@ "plasmid_name": "p3E-rab6a", "sequence-type": "addgene-full", "addgene_id": "109720", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109720.addgene-full.gb" }, @@ -98980,7 +124765,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 ORF4_nostop", "sequence-type": "addgene-full", "addgene_id": "168582", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168582.addgene-full.gb" }, @@ -98989,7 +124777,9 @@ "plasmid_name": "pDEST17-His10-Smt3-ccdB", "sequence-type": "addgene-full", "addgene_id": "166147", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166147.addgene-full.gb" }, @@ -98998,7 +124788,10 @@ "plasmid_name": "pHAGE-EGFR-P596L", "sequence-type": "addgene-full", "addgene_id": "116284", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116284.addgene-full.gb" }, @@ -99007,7 +124800,10 @@ "plasmid_name": "KA401: pMVP (L3-L2) pA; RIP::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121809", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121809.addgene-full.gb" }, @@ -99016,7 +124812,10 @@ "plasmid_name": "pDONR223_SGK1_p.A48G", "sequence-type": "addgene-full", "addgene_id": "81430", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -99028,7 +124827,10 @@ "plasmid_name": "pAG303-Gal-PA50", "sequence-type": "addgene-full", "addgene_id": "84906", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "file": "data/addgene_plasmids/84906.addgene-full.gb" }, @@ -99037,7 +124839,10 @@ "plasmid_name": "TFORF2954", "sequence-type": "addgene-full", "addgene_id": "144430", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144430.addgene-full.gb" }, @@ -99046,7 +124851,10 @@ "plasmid_name": "actc1b-mKate2-EHD1b", "sequence-type": "addgene-full", "addgene_id": "109514", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109514.addgene-full.gb" }, @@ -99055,7 +124863,10 @@ "plasmid_name": "pDONR223_AKT1_p.L52R", "sequence-type": "addgene-full", "addgene_id": "81604", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -99067,7 +124878,10 @@ "plasmid_name": "pCMB-PLAr", "sequence-type": "depositor-full", "addgene_id": "61201", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61201.depositor-full.gb" }, @@ -99076,7 +124890,10 @@ "plasmid_name": "pDONR221-SLC25A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161221", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161221.addgene-full.gb" }, @@ -99085,7 +124902,10 @@ "plasmid_name": "pDONR221-SLC20A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161188", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161188.depositor-full.gb" }, @@ -99094,7 +124914,10 @@ "plasmid_name": "pDONR223_MYC_p.E366Q", "sequence-type": "addgene-full", "addgene_id": "82819", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82819.addgene-full.gb" }, @@ -99103,7 +124926,10 @@ "plasmid_name": "pEBTetBl-CLIP-ALMS1", "sequence-type": "addgene-full", "addgene_id": "136877", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136877.addgene-full.gb" }, @@ -99112,7 +124938,10 @@ "plasmid_name": "pLDPuro-hsnSR100N", "sequence-type": "addgene-full", "addgene_id": "35172", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2011.08.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21884984" + ], "kit": null, "file": "data/addgene_plasmids/35172.addgene-full.gb" }, @@ -99121,7 +124950,10 @@ "plasmid_name": "pDONR221_SLC7A1", "sequence-type": "addgene-full", "addgene_id": "131925", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131925.addgene-full.gb" }, @@ -99130,7 +124962,6 @@ "plasmid_name": "plix403-V5-N-mEGFP", "sequence-type": "addgene-full", "addgene_id": "223957", - "references": [], "kit": null, "file": "data/addgene_plasmids/223957.addgene-full.gb" }, @@ -99139,7 +124970,6 @@ "plasmid_name": "pLenti6.3/NS4A", "sequence-type": "addgene-full", "addgene_id": "120844", - "references": [], "kit": null, "file": "data/addgene_plasmids/120844.addgene-full.gb" }, @@ -99148,7 +124978,10 @@ "plasmid_name": "TFORF3388", "sequence-type": "addgene-full", "addgene_id": "144864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144864.addgene-full.gb" }, @@ -99157,7 +124990,10 @@ "plasmid_name": "pcDNA3_HTR2A-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194366", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194366.addgene-full.gb" }, @@ -99166,7 +125002,10 @@ "plasmid_name": "pHAGE-ERBB2-S310Y", "sequence-type": "addgene-full", "addgene_id": "116350", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116350.addgene-full.gb" }, @@ -99175,7 +125014,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-IBB zeo", "sequence-type": "addgene-full", "addgene_id": "192336", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192336.addgene-full.gb" }, @@ -99184,7 +125026,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 E 27nt-del_nostop", "sequence-type": "addgene-full", "addgene_id": "153955", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153955.addgene-full.gb" }, @@ -99193,7 +125038,10 @@ "plasmid_name": "pLD-puro-Cc-PARK7WT-VA", "sequence-type": "addgene-full", "addgene_id": "115182", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115182.addgene-full.gb" }, @@ -99202,7 +125050,10 @@ "plasmid_name": "pHWBF06EC", "sequence-type": "addgene-full", "addgene_id": "130827", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130827.addgene-full.gb" }, @@ -99211,7 +125062,10 @@ "plasmid_name": "pDONR223_RIT1_WT", "sequence-type": "addgene-full", "addgene_id": "82882", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82882.addgene-full.gb" }, @@ -99220,7 +125074,10 @@ "plasmid_name": "pDONR223_SERPINB5_p.A7T", "sequence-type": "addgene-full", "addgene_id": "82736", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -99232,7 +125089,10 @@ "plasmid_name": "p8189 pHAGE N-V5 PTPN14 C1121S", "sequence-type": "addgene-full", "addgene_id": "221648", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "file": "data/addgene_plasmids/221648.addgene-full.gb" }, @@ -99241,7 +125101,6 @@ "plasmid_name": "R777-E236 Hs.RASAL2-nostop", "sequence-type": "depositor-full", "addgene_id": "70520", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -99253,7 +125112,10 @@ "plasmid_name": "pAG423GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14293", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -99265,7 +125127,6 @@ "plasmid_name": "pBABEpuro-CRAF_S259A", "sequence-type": "depositor-full", "addgene_id": "51127", - "references": [], "kit": null, "file": "data/addgene_plasmids/51127.depositor-full.gb" }, @@ -99274,7 +125135,10 @@ "plasmid_name": "pGwf", "sequence-type": "depositor-full", "addgene_id": "22517", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "file": "data/addgene_plasmids/22517.depositor-full.gb" }, @@ -99283,7 +125147,9 @@ "plasmid_name": "pTF101.1gw1", "sequence-type": "addgene-full", "addgene_id": "134768", - "references": [], + "references": [ + "https://doi.org/10.1023/B%3AEUPH.0000030669.75809.dc" + ], "kit": null, "file": "data/addgene_plasmids/134768.addgene-full.gb" }, @@ -99292,7 +125158,10 @@ "plasmid_name": "pIRIGF-IKZF1-V2", "sequence-type": "addgene-full", "addgene_id": "69045", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/69045.addgene-full.gb" }, @@ -99301,7 +125170,10 @@ "plasmid_name": "pDONR223_KEAP1_p.S45F", "sequence-type": "addgene-full", "addgene_id": "81496", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -99313,7 +125185,10 @@ "plasmid_name": "pHAGE-CDKN2A-L78Hfs*41", "sequence-type": "addgene-full", "addgene_id": "116222", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116222.addgene-full.gb" }, @@ -99322,7 +125197,10 @@ "plasmid_name": "RALYL-1", "sequence-type": "addgene-full", "addgene_id": "155877", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155877.addgene-full.gb" }, @@ -99331,7 +125209,10 @@ "plasmid_name": "TFORF3440", "sequence-type": "addgene-full", "addgene_id": "144916", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144916.addgene-full.gb" }, @@ -99340,7 +125221,10 @@ "plasmid_name": "TFORF3066", "sequence-type": "addgene-full", "addgene_id": "144542", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144542.addgene-full.gb" }, @@ -99349,7 +125233,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp13", "sequence-type": "addgene-full", "addgene_id": "168970", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168970.addgene-full.gb" }, @@ -99358,7 +125245,9 @@ "plasmid_name": "pDONR221-PSMD11", "sequence-type": "addgene-full", "addgene_id": "166201", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166201.addgene-full.gb" }, @@ -99367,7 +125256,9 @@ "plasmid_name": "AAV-hSyn-TetRC-2A-Tomato-bGHpA;U6_BsaI-sgRNA", "sequence-type": "addgene-full", "addgene_id": "177360", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-1065603/v1" + ], "kit": null, "file": "data/addgene_plasmids/177360.addgene-full.gb" }, @@ -99376,7 +125267,10 @@ "plasmid_name": "pDONR221-SLC9A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161353", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161353.addgene-full.gb" }, @@ -99385,7 +125279,10 @@ "plasmid_name": "pYPQCas12j2", "sequence-type": "addgene-full", "addgene_id": "189780", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2022.100453", + "https://www.ncbi.nlm.nih.gov/pubmed/36127876" + ], "kit": null, "file": "data/addgene_plasmids/189780.addgene-full.gb" }, @@ -99394,7 +125291,9 @@ "plasmid_name": "pME-DreERT2 (JDW 1344)", "sequence-type": "addgene-full", "addgene_id": "224523", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224523.addgene-full.gb" }, @@ -99403,7 +125302,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-SART1", "sequence-type": "depositor-full", "addgene_id": "38087", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38087.depositor-full.gb" }, @@ -99412,7 +125314,10 @@ "plasmid_name": "pLenti PGK Hygro DEST (w530-1)", "sequence-type": "addgene-full", "addgene_id": "19066", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/19066.addgene-full.gb" }, @@ -99421,7 +125326,10 @@ "plasmid_name": "pMMK ENTR 1", "sequence-type": "addgene-full", "addgene_id": "206260", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206260.addgene-full.gb" }, @@ -99430,7 +125338,10 @@ "plasmid_name": "pDONR223_CDK17_WT", "sequence-type": "addgene-full", "addgene_id": "81776", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -99442,7 +125353,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway mmu SE-Irf2bpl I", "sequence-type": "addgene-full", "addgene_id": "89378", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89378.addgene-full.gb" }, @@ -99463,7 +125377,10 @@ "plasmid_name": "pDEST-mCherry-LacR-PALB2", "sequence-type": "depositor-full", "addgene_id": "71112", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71112.depositor-full.gb" }, @@ -99472,7 +125389,10 @@ "plasmid_name": "pDONR223_PIK3R4_WT", "sequence-type": "addgene-full", "addgene_id": "81859", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -99484,7 +125404,10 @@ "plasmid_name": "pGA2ox2:GUS", "sequence-type": "addgene-full", "addgene_id": "108564", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00366", + "https://www.ncbi.nlm.nih.gov/pubmed/28855334" + ], "kit": null, "file": "data/addgene_plasmids/108564.addgene-full.gb" }, @@ -99493,7 +125416,9 @@ "plasmid_name": "pPB-cT3G-cERP2-SMAD4", "sequence-type": "addgene-full", "addgene_id": "222573", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222573.addgene-full.gb" }, @@ -99502,7 +125427,10 @@ "plasmid_name": "pFRm43GW", "sequence-type": "addgene-full", "addgene_id": "133748", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "file": "data/addgene_plasmids/133748.addgene-full.gb" }, @@ -99511,7 +125439,6 @@ "plasmid_name": "pCWXPGR-pTF-EpoR", "sequence-type": "addgene-full", "addgene_id": "114289", - "references": [], "kit": null, "file": "data/addgene_plasmids/114289.addgene-full.gb" }, @@ -99520,7 +125447,10 @@ "plasmid_name": "pEAHISPAFabH", "sequence-type": "depositor-full", "addgene_id": "97018", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97018.depositor-full.gb" }, @@ -99529,7 +125459,10 @@ "plasmid_name": "pFRT/FLAG/HA MOV10 D645N", "sequence-type": "depositor-full", "addgene_id": "51717", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.03.017", + "https://www.ncbi.nlm.nih.gov/pubmed/24726324" + ], "kit": null, "file": "data/addgene_plasmids/51717.depositor-full.gb" }, @@ -99538,7 +125471,6 @@ "plasmid_name": "R777-E026 Hs.CDK6-nostop", "sequence-type": "depositor-full", "addgene_id": "70310", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -99550,7 +125482,10 @@ "plasmid_name": "pHAGE-BRAF-G596S", "sequence-type": "addgene-full", "addgene_id": "116159", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116159.addgene-full.gb" }, @@ -99559,7 +125494,10 @@ "plasmid_name": "pEF-ENTR B (708-1)", "sequence-type": "depositor-full", "addgene_id": "17428", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17428.depositor-full.gb" }, @@ -99568,7 +125506,10 @@ "plasmid_name": "TFORF3163", "sequence-type": "addgene-full", "addgene_id": "144639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144639.addgene-full.gb" }, @@ -99577,7 +125518,10 @@ "plasmid_name": "KZ501: pMVP (L3-L2) P2A-Puro + polyA", "sequence-type": "addgene-full", "addgene_id": "121780", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121780.addgene-full.gb" }, @@ -99586,7 +125530,10 @@ "plasmid_name": "KO401: pMAGIC (R4-R3) NLS-x Cas9(3.7)-NLS", "sequence-type": "addgene-full", "addgene_id": "121834", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121834.addgene-full.gb" }, @@ -99595,7 +125542,10 @@ "plasmid_name": "pGWB427", "sequence-type": "depositor-full", "addgene_id": "74821", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74821.depositor-full.gb" }, @@ -99604,7 +125554,10 @@ "plasmid_name": "pAG416GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14339", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -99616,7 +125569,10 @@ "plasmid_name": "Luc-Hdm4-3'UTR-F2d5", "sequence-type": "depositor-full", "addgene_id": "64018", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.233585.113", + "https://www.ncbi.nlm.nih.gov/pubmed/24532687" + ], "kit": null, "file": "data/addgene_plasmids/64018.depositor-full.gb" }, @@ -99625,7 +125581,9 @@ "plasmid_name": "pPB-cT3G-cERP2-DLX5", "sequence-type": "addgene-full", "addgene_id": "222927", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "file": "data/addgene_plasmids/222927.addgene-full.gb" }, @@ -99634,7 +125592,10 @@ "plasmid_name": "actc1b-mKate2-Rac1", "sequence-type": "addgene-full", "addgene_id": "109529", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109529.addgene-full.gb" }, @@ -99643,7 +125604,10 @@ "plasmid_name": "pCFJ352 - MCS(ttTi4348, I)", "sequence-type": "depositor-full", "addgene_id": "34868", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34868.depositor-full.gb" }, @@ -99652,7 +125616,10 @@ "plasmid_name": "pENT-L3-pFOGl-L5", "sequence-type": "depositor-full", "addgene_id": "186364", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186364.depositor-full.gb" }, @@ -99661,7 +125628,10 @@ "plasmid_name": "LIIc R 3-4", "sequence-type": "depositor-full", "addgene_id": "54370", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54370.depositor-full.gb" }, @@ -99670,7 +125640,10 @@ "plasmid_name": "pSLIK-IDH1-FLAG", "sequence-type": "addgene-full", "addgene_id": "66802", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + ], "kit": null, "file": "data/addgene_plasmids/66802.addgene-full.gb" }, @@ -99679,7 +125652,6 @@ "plasmid_name": "pDEST-Spe4-RfA-mScarlet-I-stop", "sequence-type": "addgene-full", "addgene_id": "186393", - "references": [], "kit": null, "file": "data/addgene_plasmids/186393.addgene-full.gb" }, @@ -99688,7 +125660,10 @@ "plasmid_name": "pDONR221-kcnj8", "sequence-type": "addgene-full", "addgene_id": "173134", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173134.addgene-full.gb" }, @@ -99697,7 +125672,10 @@ "plasmid_name": "pDONR223_OR2M2_p.V117I", "sequence-type": "addgene-full", "addgene_id": "81639", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -99709,7 +125687,10 @@ "plasmid_name": "pDONR223_KEAP1_p.S144F", "sequence-type": "addgene-full", "addgene_id": "82790", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82790.addgene-full.gb" }, @@ -99718,7 +125699,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.H1047R", "sequence-type": "addgene-full", "addgene_id": "82824", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82824.addgene-full.gb" }, @@ -99727,7 +125711,10 @@ "plasmid_name": "TFORF3383", "sequence-type": "addgene-full", "addgene_id": "144859", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144859.addgene-full.gb" }, @@ -99736,7 +125723,6 @@ "plasmid_name": "R777-E355 Hs.TSC2", "sequence-type": "depositor-full", "addgene_id": "70639", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -99748,7 +125734,10 @@ "plasmid_name": "pDONR221_MPC1L", "sequence-type": "addgene-full", "addgene_id": "131918", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131918.addgene-full.gb" }, @@ -99757,7 +125746,10 @@ "plasmid_name": "actc1b-mKate2-rab6a", "sequence-type": "addgene-full", "addgene_id": "109652", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109652.addgene-full.gb" }, @@ -99766,7 +125758,10 @@ "plasmid_name": "pMSCV-SMYD2 F184A", "sequence-type": "addgene-full", "addgene_id": "85659", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.275529.115", + "https://www.ncbi.nlm.nih.gov/pubmed/26988419" + ], "kit": null, "file": "data/addgene_plasmids/85659.addgene-full.gb" }, @@ -99775,7 +125770,10 @@ "plasmid_name": "TFORF3300", "sequence-type": "addgene-full", "addgene_id": "144776", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144776.addgene-full.gb" }, @@ -99784,7 +125782,10 @@ "plasmid_name": "pDONR221_SLC25A47", "sequence-type": "addgene-full", "addgene_id": "131983", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131983.addgene-full.gb" }, @@ -99793,7 +125794,10 @@ "plasmid_name": "pDONR223_PIK3CG_p.V168M", "sequence-type": "addgene-full", "addgene_id": "81542", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -99805,7 +125809,10 @@ "plasmid_name": "pDONR221-SLC22A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161167", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161167.addgene-full.gb" }, @@ -99814,7 +125821,10 @@ "plasmid_name": "5'-3xFLAG Gse1+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212057", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212057.addgene-full.gb" }, @@ -99823,7 +125833,9 @@ "plasmid_name": "pcDNA3.2-DEST-MatryoshCaMP6s", "sequence-type": "addgene-full", "addgene_id": "100025", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "file": "data/addgene_plasmids/100025.addgene-full.gb" }, @@ -99832,7 +125844,10 @@ "plasmid_name": "pDONR221-SLC35F2_STOP", "sequence-type": "addgene-full", "addgene_id": "161287", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161287.addgene-full.gb" }, @@ -99841,7 +125856,10 @@ "plasmid_name": "pE6c", "sequence-type": "depositor-full", "addgene_id": "17466", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17466.depositor-full.gb" }, @@ -99850,7 +125868,10 @@ "plasmid_name": "p3E_GGWDest+", "sequence-type": "depositor-full", "addgene_id": "49317", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -99862,7 +125883,10 @@ "plasmid_name": "pAG305GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14377", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -99874,7 +125898,10 @@ "plasmid_name": "TFORF3020", "sequence-type": "addgene-full", "addgene_id": "144496", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144496.addgene-full.gb" }, @@ -99883,7 +125910,10 @@ "plasmid_name": "pSLIK-Venus", "sequence-type": "depositor-full", "addgene_id": "25734", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0606179103", + "https://www.ncbi.nlm.nih.gov/pubmed/16945906" + ], "kit": null, "file": "data/addgene_plasmids/25734.depositor-full.gb" }, @@ -99892,7 +125922,10 @@ "plasmid_name": "pGC162", "sequence-type": "depositor-full", "addgene_id": "19633", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19633.depositor-full.gb" }, @@ -99901,7 +125934,10 @@ "plasmid_name": "pDestTol2pA2-LA-nanoLuc-RA", "sequence-type": "addgene-full", "addgene_id": "128692", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11259-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31366908" + ], "kit": null, "file": "data/addgene_plasmids/128692.addgene-full.gb" }, @@ -99910,7 +125946,6 @@ "plasmid_name": "pLIX403-EYFP-ccdB-Blast", "sequence-type": "addgene-full", "addgene_id": "158551", - "references": [], "kit": null, "file": "data/addgene_plasmids/158551.addgene-full.gb" }, @@ -99919,7 +125954,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-4", "sequence-type": "depositor-full", "addgene_id": "46713", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46713.depositor-full.gb" }, @@ -99928,7 +125966,10 @@ "plasmid_name": "pENTR223-BLLF3", "sequence-type": "addgene-full", "addgene_id": "195793", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195793.addgene-full.gb" }, @@ -99937,7 +125978,10 @@ "plasmid_name": "C513-E08: attB5r-H6-MBP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162950", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -99949,7 +125993,10 @@ "plasmid_name": "pDONR221-SLC25A25_STOP", "sequence-type": "depositor-full", "addgene_id": "161158", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161158.depositor-full.gb" }, @@ -99958,7 +126005,10 @@ "plasmid_name": "pENTR223-EBNA1", "sequence-type": "addgene-full", "addgene_id": "195827", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195827.addgene-full.gb" }, @@ -99967,7 +126017,10 @@ "plasmid_name": "pDEST40-CES2C-\u0394C", "sequence-type": "addgene-full", "addgene_id": "200555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2023.04.011", + "https://www.ncbi.nlm.nih.gov/pubmed/37141889" + ], "kit": null, "file": "data/addgene_plasmids/200555.addgene-full.gb" }, @@ -99976,7 +126029,10 @@ "plasmid_name": "PRMT2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176953", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176953.addgene-full.gb" }, @@ -99985,7 +126041,10 @@ "plasmid_name": "pDONR223_C15orf23_p.P26S", "sequence-type": "addgene-full", "addgene_id": "81368", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -99997,7 +126056,10 @@ "plasmid_name": "pLenti6-H2B-mCherry", "sequence-type": "addgene-full", "addgene_id": "89766", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.194662", + "https://www.ncbi.nlm.nih.gov/pubmed/28232523" + ], "kit": null, "file": "data/addgene_plasmids/89766.addgene-full.gb" }, @@ -100006,7 +126068,10 @@ "plasmid_name": "pDONR223_FGFR3_WT", "sequence-type": "addgene-full", "addgene_id": "82121", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82121.addgene-full.gb" }, @@ -100015,7 +126080,6 @@ "plasmid_name": "g13s pD47", "sequence-type": "addgene-full", "addgene_id": "117445", - "references": [], "kit": null, "file": "data/addgene_plasmids/117445.addgene-full.gb" }, @@ -100024,7 +126088,10 @@ "plasmid_name": "pLgw ELK4-V5-EcoDam", "sequence-type": "addgene-full", "addgene_id": "98607", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98607.addgene-full.gb" }, @@ -100033,7 +126100,10 @@ "plasmid_name": "pCBP60g-NLS-3xmCitrine", "sequence-type": "addgene-full", "addgene_id": "192521", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2023.112676", + "https://www.ncbi.nlm.nih.gov/pubmed/37342910" + ], "kit": null, "file": "data/addgene_plasmids/192521.addgene-full.gb" }, @@ -100042,7 +126112,10 @@ "plasmid_name": "pDONR221_SLC45A2", "sequence-type": "addgene-full", "addgene_id": "132254", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132254.addgene-full.gb" }, @@ -100051,7 +126124,10 @@ "plasmid_name": "pHAGE-PIK3CA-V344G", "sequence-type": "addgene-full", "addgene_id": "116547", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116547.addgene-full.gb" }, @@ -100060,7 +126136,6 @@ "plasmid_name": "pAG416GAL10-HTLV_PR", "sequence-type": "addgene-full", "addgene_id": "203467", - "references": [], "kit": null, "file": "data/addgene_plasmids/203467.addgene-full.gb" }, @@ -100069,7 +126144,10 @@ "plasmid_name": "pCFJ1532 - pEXP[Psmu-1 | mosase (PATCs) | smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159807", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159807.addgene-full.gb" }, @@ -100090,7 +126168,10 @@ "plasmid_name": "pDONR_P2R-P3_R2-miniTurbo-NES-mVenus-STOP-L3", "sequence-type": "addgene-full", "addgene_id": "127355", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127355.addgene-full.gb" }, @@ -100099,7 +126180,10 @@ "plasmid_name": "pAG416GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14243", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -100111,7 +126195,10 @@ "plasmid_name": "pENTR-L1-SYN-L4", "sequence-type": "depositor-full", "addgene_id": "32583", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32583.depositor-full.gb" }, @@ -100120,7 +126207,9 @@ "plasmid_name": "pMpGWB233", "sequence-type": "depositor-full", "addgene_id": "68624", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68624.depositor-full.gb" }, @@ -100129,7 +126218,10 @@ "plasmid_name": "pME-BTK-PH", "sequence-type": "depositor-full", "addgene_id": "67673", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67673.depositor-full.gb" }, @@ -100138,7 +126230,9 @@ "plasmid_name": "pcDNA5-miniTurbo-EGFP", "sequence-type": "addgene-full", "addgene_id": "209059", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209059.addgene-full.gb" }, @@ -100147,7 +126241,10 @@ "plasmid_name": "pEAHISPApqsL", "sequence-type": "addgene-full", "addgene_id": "97020", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97020.addgene-full.gb" }, @@ -100156,7 +126253,6 @@ "plasmid_name": "p667-UBC-TLK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135249", - "references": [], "kit": null, "file": "data/addgene_plasmids/135249.addgene-full.gb" }, @@ -100165,7 +126261,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S32", "sequence-type": "addgene-full", "addgene_id": "140308", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140308.addgene-full.gb" }, @@ -100174,7 +126273,10 @@ "plasmid_name": "pDONR221-ETV3", "sequence-type": "addgene-full", "addgene_id": "88804", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88804.addgene-full.gb" }, @@ -100183,7 +126285,10 @@ "plasmid_name": "pDONR223-AURKB", "sequence-type": "addgene-full", "addgene_id": "23682", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -100195,7 +126300,10 @@ "plasmid_name": "pHAGE-PIK3CA-G106R", "sequence-type": "addgene-full", "addgene_id": "116493", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116493.addgene-full.gb" }, @@ -100204,7 +126312,10 @@ "plasmid_name": "pHAGE-PIK3CD", "sequence-type": "addgene-full", "addgene_id": "116773", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116773.addgene-full.gb" }, @@ -100213,7 +126324,10 @@ "plasmid_name": "hCas9-VPR", "sequence-type": "depositor-full", "addgene_id": "68497", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.3580", + "https://www.ncbi.nlm.nih.gov/pubmed/26344044" + ], "kit": null, "file": "data/addgene_plasmids/68497.depositor-full.gb" }, @@ -100222,7 +126336,10 @@ "plasmid_name": "458 p3E-2A-EGFP-CAAXpA", "sequence-type": "addgene-full", "addgene_id": "195968", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195968.addgene-full.gb" }, @@ -100231,7 +126348,10 @@ "plasmid_name": "pENTR D-TOPO-C3_11", "sequence-type": "depositor-full", "addgene_id": "60260", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60260.depositor-full.gb" }, @@ -100240,7 +126360,10 @@ "plasmid_name": "pCMV 3xFLAG-GABARAPL1 G116A", "sequence-type": "addgene-full", "addgene_id": "123101", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123101.addgene-full.gb" }, @@ -100249,7 +126372,10 @@ "plasmid_name": "pDONR221_SLC36A3", "sequence-type": "addgene-full", "addgene_id": "132060", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132060.addgene-full.gb" }, @@ -100258,7 +126384,10 @@ "plasmid_name": "pZA7", "sequence-type": "addgene-full", "addgene_id": "158485", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158485.addgene-full.gb" }, @@ -100267,7 +126396,10 @@ "plasmid_name": "RET-V5", "sequence-type": "addgene-full", "addgene_id": "139627", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139627.addgene-full.gb" }, @@ -100276,7 +126408,6 @@ "plasmid_name": "pDONR221-hmgn6", "sequence-type": "addgene-full", "addgene_id": "192715", - "references": [], "kit": null, "file": "data/addgene_plasmids/192715.addgene-full.gb" }, @@ -100285,7 +126416,10 @@ "plasmid_name": "Tol2-lyzC-mcherry-2a-CDK2", "sequence-type": "addgene-full", "addgene_id": "121131", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1905221116", + "https://www.ncbi.nlm.nih.gov/pubmed/31451657" + ], "kit": null, "file": "data/addgene_plasmids/121131.addgene-full.gb" }, @@ -100294,7 +126428,10 @@ "plasmid_name": "pcDNA5FRT/TO-YOD1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113483", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113483.addgene-full.gb" }, @@ -100303,7 +126440,10 @@ "plasmid_name": "GFP-BAZ2A", "sequence-type": "addgene-full", "addgene_id": "65373", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65373.addgene-full.gb" }, @@ -100312,7 +126452,10 @@ "plasmid_name": "pHAGE-PIK3R1-Q302*", "sequence-type": "addgene-full", "addgene_id": "116601", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116601.addgene-full.gb" }, @@ -100321,7 +126464,10 @@ "plasmid_name": "TIAM1_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53867", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53867.addgene-full.gb" }, @@ -100330,7 +126476,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-WWC2", "sequence-type": "addgene-full", "addgene_id": "172995", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172995.addgene-full.gb" }, @@ -100339,7 +126488,10 @@ "plasmid_name": "pMXs-ms-c-Myc-L420P", "sequence-type": "depositor-full", "addgene_id": "50776", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "file": "data/addgene_plasmids/50776.depositor-full.gb" }, @@ -100348,7 +126500,10 @@ "plasmid_name": "pDONR221_SLC39A9", "sequence-type": "addgene-full", "addgene_id": "132189", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132189.addgene-full.gb" }, @@ -100357,7 +126512,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp4", "sequence-type": "depositor-full", "addgene_id": "168953", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168953.depositor-full.gb" }, @@ -100366,7 +126524,10 @@ "plasmid_name": "Flag-HA-USP52", "sequence-type": "addgene-full", "addgene_id": "22589", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22589.addgene-full.gb" }, @@ -100375,7 +126536,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 N637A", "sequence-type": "addgene-full", "addgene_id": "175773", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175773.addgene-full.gb" }, @@ -100384,7 +126548,10 @@ "plasmid_name": "pBullet-er-n", "sequence-type": "depositor-full", "addgene_id": "53067", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53067.depositor-full.gb" }, @@ -100393,7 +126560,10 @@ "plasmid_name": "MAC_C_ROS1", "sequence-type": "addgene-full", "addgene_id": "187766", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187766.addgene-full.gb" }, @@ -100402,7 +126572,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.A137E", "sequence-type": "addgene-full", "addgene_id": "81355", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -100414,7 +126587,10 @@ "plasmid_name": "pQLinkHD-SYNZIP6", "sequence-type": "depositor-full", "addgene_id": "80662", - "references": [], + "references": [ + "https://doi.org/10.1021/sb200015u", + "https://www.ncbi.nlm.nih.gov/pubmed/22558529" + ], "kit": null, "file": "data/addgene_plasmids/80662.depositor-full.gb" }, @@ -100423,7 +126599,10 @@ "plasmid_name": "pLentiPGK Hygro DEST H2B-mCerulean3", "sequence-type": "addgene-full", "addgene_id": "90234", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2017.128", + "https://www.ncbi.nlm.nih.gov/pubmed/29266096" + ], "kit": null, "file": "data/addgene_plasmids/90234.addgene-full.gb" }, @@ -100432,7 +126611,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK33_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170611", - "references": [], "kit": null, "file": "data/addgene_plasmids/170611.addgene-full.gb" }, @@ -100441,7 +126619,10 @@ "plasmid_name": "MNEAP1ec", "sequence-type": "addgene-full", "addgene_id": "131020", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "file": "data/addgene_plasmids/131020.addgene-full.gb" }, @@ -100450,7 +126631,10 @@ "plasmid_name": "pDONR221_MFSD2B", "sequence-type": "addgene-full", "addgene_id": "132269", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132269.addgene-full.gb" }, @@ -100459,7 +126643,6 @@ "plasmid_name": "Hs.NRAS", "sequence-type": "depositor-full", "addgene_id": "83173", - "references": [], "kit": null, "file": "data/addgene_plasmids/83173.depositor-full.gb" }, @@ -100468,7 +126651,10 @@ "plasmid_name": "pYPQ203 (pMDC32-Ubi1)", "sequence-type": "addgene-full", "addgene_id": "86207", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "file": "data/addgene_plasmids/86207.addgene-full.gb" }, @@ -100477,7 +126663,6 @@ "plasmid_name": "CTNNB1 - R565C in pENTR", "sequence-type": "addgene-full", "addgene_id": "216620", - "references": [], "kit": null, "file": "data/addgene_plasmids/216620.addgene-full.gb" }, @@ -100486,7 +126671,10 @@ "plasmid_name": "pDONR221-SLC35B4_STOP", "sequence-type": "depositor-full", "addgene_id": "161241", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161241.depositor-full.gb" }, @@ -100495,7 +126683,10 @@ "plasmid_name": "pENTR-AIF", "sequence-type": "addgene-full", "addgene_id": "16182", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.03.032", + "https://www.ncbi.nlm.nih.gov/pubmed/16713569" + ], "kit": null, "file": "data/addgene_plasmids/16182.addgene-full.gb" }, @@ -100504,7 +126695,10 @@ "plasmid_name": "pPA-RL-FL", "sequence-type": "depositor-full", "addgene_id": "78863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "file": "data/addgene_plasmids/78863.depositor-full.gb" }, @@ -100513,7 +126707,10 @@ "plasmid_name": "pDONR223_FGFR3_K650E", "sequence-type": "addgene-full", "addgene_id": "82187", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82187.addgene-full.gb" }, @@ -100522,7 +126719,10 @@ "plasmid_name": "pDONR TDP43 WT YFP", "sequence-type": "addgene-full", "addgene_id": "27470", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0802082105", + "https://www.ncbi.nlm.nih.gov/pubmed/18434538" + ], "kit": null, "file": "data/addgene_plasmids/27470.addgene-full.gb" }, @@ -100531,7 +126731,6 @@ "plasmid_name": "Phage-PGK-GFP-T(WT)", "sequence-type": "addgene-full", "addgene_id": "181736", - "references": [], "kit": null, "file": "data/addgene_plasmids/181736.addgene-full.gb" }, @@ -100540,7 +126739,10 @@ "plasmid_name": "R4pGWB601_UBQ10p-Turbo-YFP-NLS", "sequence-type": "addgene-full", "addgene_id": "127368", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127368.addgene-full.gb" }, @@ -100549,7 +126751,10 @@ "plasmid_name": "pCSDest", "sequence-type": "depositor-full", "addgene_id": "22423", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/22423.depositor-full.gb" }, @@ -100558,7 +126763,10 @@ "plasmid_name": "pDONR223_DVL3_WT", "sequence-type": "addgene-full", "addgene_id": "82267", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82267.addgene-full.gb" }, @@ -100567,7 +126775,10 @@ "plasmid_name": "pcDNA3_EGFR-NTEV-tcs-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "214610", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214610.addgene-full.gb" }, @@ -100576,7 +126787,10 @@ "plasmid_name": "pMuLE ENTR CMV eGFP L3-L2", "sequence-type": "depositor-full", "addgene_id": "62143", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62143.depositor-full.gb" }, @@ -100585,7 +126799,10 @@ "plasmid_name": "pSC43", "sequence-type": "depositor-full", "addgene_id": "104817", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104817.depositor-full.gb" }, @@ -100594,7 +126811,10 @@ "plasmid_name": "pDONR221_SLC32A1", "sequence-type": "addgene-full", "addgene_id": "132112", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132112.addgene-full.gb" }, @@ -100603,7 +126823,10 @@ "plasmid_name": "pDONR223 LC3B G120A", "sequence-type": "addgene-full", "addgene_id": "123073", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123073.addgene-full.gb" }, @@ -100612,7 +126835,6 @@ "plasmid_name": "R777-E130 Hs.MDM2-nostop", "sequence-type": "depositor-full", "addgene_id": "70414", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -100624,7 +126846,10 @@ "plasmid_name": "HJP-195-IVS-Syn21-gp41-1C-CreB-NrdJ-1N-WPREUw", "sequence-type": "addgene-full", "addgene_id": "162476", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162476.addgene-full.gb" }, @@ -100633,7 +126858,6 @@ "plasmid_name": "pHAGE-CMV-Flag-hcRed_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135274", - "references": [], "kit": null, "file": "data/addgene_plasmids/135274.addgene-full.gb" }, @@ -100642,7 +126866,10 @@ "plasmid_name": "pSC12", "sequence-type": "addgene-full", "addgene_id": "104786", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104786.addgene-full.gb" }, @@ -100651,7 +126878,10 @@ "plasmid_name": "Active Wnt3A-V5", "sequence-type": "depositor-full", "addgene_id": "43810", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43810.depositor-full.gb" }, @@ -100660,7 +126890,6 @@ "plasmid_name": "PB-TET-PH-lox66FRT", "sequence-type": "addgene-full", "addgene_id": "139561", - "references": [], "kit": null, "file": "data/addgene_plasmids/139561.addgene-full.gb" }, @@ -100669,7 +126898,10 @@ "plasmid_name": "MSCV-opEBNA2-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "220354", - "references": [], + "references": [ + "https://doi.org/10.3389/fimmu.2023.1331730", + "https://www.ncbi.nlm.nih.gov/pubmed/38169736" + ], "kit": null, "file": "data/addgene_plasmids/220354.addgene-full.gb" }, @@ -100678,7 +126910,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag6_nostop", "sequence-type": "addgene-full", "addgene_id": "153184", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153184.addgene-full.gb" }, @@ -100687,7 +126922,10 @@ "plasmid_name": "pTW322", "sequence-type": "addgene-full", "addgene_id": "115953", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115953.addgene-full.gb" }, @@ -100696,7 +126934,10 @@ "plasmid_name": "pCAG/ATP11B(E180Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209250", - "references": [], + "references": [ + "https://doi.org/10.1002/1873-3468.13629", + "https://www.ncbi.nlm.nih.gov/pubmed/31571211" + ], "kit": null, "file": "data/addgene_plasmids/209250.addgene-full.gb" }, @@ -100705,7 +126946,10 @@ "plasmid_name": "pFunnyfarm", "sequence-type": "depositor-full", "addgene_id": "24755", - "references": [], + "references": [ + "https://doi.org/10.1016/j.chom.2010.05.006", + "https://www.ncbi.nlm.nih.gov/pubmed/20542254" + ], "kit": null, "file": "data/addgene_plasmids/24755.depositor-full.gb" }, @@ -100714,7 +126958,9 @@ "plasmid_name": "pMpGWB119", "sequence-type": "depositor-full", "addgene_id": "68573", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68573.depositor-full.gb" }, @@ -100723,7 +126969,10 @@ "plasmid_name": "pRP(Exp)-CMV> ORF_924bp (Azgp1):dTomato:IRES:Puro", "sequence-type": "addgene-full", "addgene_id": "110831", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.201701465RR", + "https://www.ncbi.nlm.nih.gov/pubmed/29570397" + ], "kit": null, "file": "data/addgene_plasmids/110831.addgene-full.gb" }, @@ -100732,7 +126981,10 @@ "plasmid_name": "pKD001 pME minprom_EGFP", "sequence-type": "addgene-full", "addgene_id": "195955", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11561-7", + "https://www.ncbi.nlm.nih.gov/pubmed/31451684" + ], "kit": null, "file": "data/addgene_plasmids/195955.addgene-full.gb" }, @@ -100741,7 +126993,10 @@ "plasmid_name": "pYPQ292-D570A", "sequence-type": "addgene-full", "addgene_id": "129679", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129679.addgene-full.gb" }, @@ -100750,7 +127005,10 @@ "plasmid_name": "MAC_N_GSK3B", "sequence-type": "addgene-full", "addgene_id": "111687", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111687.addgene-full.gb" }, @@ -100759,7 +127017,6 @@ "plasmid_name": "pLENTI_TetOn_Hu_PTTG1(WT)", "sequence-type": "addgene-full", "addgene_id": "136346", - "references": [], "kit": null, "file": "data/addgene_plasmids/136346.addgene-full.gb" }, @@ -100768,7 +127025,10 @@ "plasmid_name": "pDL108", "sequence-type": "addgene-full", "addgene_id": "175913", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175913.addgene-full.gb" }, @@ -100777,7 +127037,10 @@ "plasmid_name": "pCMB-LEr", "sequence-type": "depositor-full", "addgene_id": "61186", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61186.depositor-full.gb" }, @@ -100786,7 +127049,6 @@ "plasmid_name": "EV-A71 2A protease; no tag, self cleaving", "sequence-type": "addgene-full", "addgene_id": "204813", - "references": [], "kit": null, "file": "data/addgene_plasmids/204813.addgene-full.gb" }, @@ -100795,7 +127057,6 @@ "plasmid_name": "pDONR221-erg", "sequence-type": "addgene-full", "addgene_id": "192728", - "references": [], "kit": null, "file": "data/addgene_plasmids/192728.addgene-full.gb" }, @@ -100804,7 +127065,6 @@ "plasmid_name": "GST-thr-RAF1-RBD", "sequence-type": "addgene-full", "addgene_id": "86033", - "references": [], "kit": null, "file": "data/addgene_plasmids/86033.addgene-full.gb" }, @@ -100813,7 +127073,10 @@ "plasmid_name": "pEF5-FRT-V5-DEST-GFP-Kif26b", "sequence-type": "addgene-full", "addgene_id": "102862", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "file": "data/addgene_plasmids/102862.addgene-full.gb" }, @@ -100822,7 +127085,10 @@ "plasmid_name": "MAC-CTSS", "sequence-type": "addgene-full", "addgene_id": "172415", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172415.addgene-full.gb" }, @@ -100831,7 +127097,10 @@ "plasmid_name": "pDONR223_B2M_p.M1V", "sequence-type": "addgene-full", "addgene_id": "81281", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -100843,7 +127112,10 @@ "plasmid_name": "pDONR223_PPP2R1A_p.A541G", "sequence-type": "addgene-full", "addgene_id": "82771", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82771.addgene-full.gb" }, @@ -100852,7 +127124,10 @@ "plasmid_name": "pDONR223_SYCP1_p.D889N", "sequence-type": "addgene-full", "addgene_id": "81538", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -100864,7 +127139,10 @@ "plasmid_name": "MLKS2delARMec", "sequence-type": "addgene-full", "addgene_id": "130860", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "file": "data/addgene_plasmids/130860.addgene-full.gb" }, @@ -100873,7 +127151,6 @@ "plasmid_name": "dCas9 gateway compatible", "sequence-type": "addgene-full", "addgene_id": "128322", - "references": [], "kit": null, "file": "data/addgene_plasmids/128322.addgene-full.gb" }, @@ -100882,7 +127159,10 @@ "plasmid_name": "pDON223 Spike H655Y", "sequence-type": "addgene-full", "addgene_id": "180059", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180059.addgene-full.gb" }, @@ -100891,7 +127171,10 @@ "plasmid_name": "actc1b-mKate2-rab35b", "sequence-type": "addgene-full", "addgene_id": "109628", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109628.addgene-full.gb" }, @@ -100900,7 +127183,6 @@ "plasmid_name": "6xHis-WT-long-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192091", - "references": [], "kit": null, "file": "data/addgene_plasmids/192091.addgene-full.gb" }, @@ -100909,7 +127191,10 @@ "plasmid_name": "pME-TagBFP-NS", "sequence-type": "depositor-full", "addgene_id": "75342", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": null, "file": "data/addgene_plasmids/75342.depositor-full.gb" }, @@ -100918,7 +127203,10 @@ "plasmid_name": "MAC_C_VPS35L", "sequence-type": "addgene-full", "addgene_id": "209692", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209692.addgene-full.gb" }, @@ -100927,7 +127215,9 @@ "plasmid_name": "pMpGWB314", "sequence-type": "depositor-full", "addgene_id": "68642", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68642.depositor-full.gb" }, @@ -100936,7 +127226,10 @@ "plasmid_name": "pDEST-Spe3-RfA-Venus", "sequence-type": "addgene-full", "addgene_id": "186372", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186372.addgene-full.gb" }, @@ -100945,7 +127238,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP16", "sequence-type": "addgene-full", "addgene_id": "154414", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154414.addgene-full.gb" }, @@ -100954,7 +127250,10 @@ "plasmid_name": "pGMCtN-P38-sspBmyc", "sequence-type": "depositor-full", "addgene_id": "27375", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkp015", + "https://www.ncbi.nlm.nih.gov/pubmed/19174563" + ], "kit": null, "file": "data/addgene_plasmids/27375.depositor-full.gb" }, @@ -100963,7 +127262,6 @@ "plasmid_name": "R777-E312 Hs.SHC3-nostop", "sequence-type": "depositor-full", "addgene_id": "70596", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -100975,7 +127273,10 @@ "plasmid_name": "pFRT_TO_eGFP_TIA1", "sequence-type": "addgene-full", "addgene_id": "106094", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106094.addgene-full.gb" }, @@ -100984,7 +127285,10 @@ "plasmid_name": "pAG425GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14225", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -100996,7 +127300,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_F27A", "sequence-type": "depositor-full", "addgene_id": "65661", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65661.depositor-full.gb" }, @@ -101005,7 +127312,10 @@ "plasmid_name": "pDONR221-SLC34A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161266", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161266.addgene-full.gb" }, @@ -101014,7 +127324,10 @@ "plasmid_name": "TFORF3516", "sequence-type": "depositor-full", "addgene_id": "144992", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144992.depositor-full.gb" }, @@ -101023,7 +127336,6 @@ "plasmid_name": "p667-UBC-TSSK4-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189901", - "references": [], "kit": null, "file": "data/addgene_plasmids/189901.addgene-full.gb" }, @@ -101032,7 +127344,10 @@ "plasmid_name": "pDONR223_SPOP_p.W131C", "sequence-type": "addgene-full", "addgene_id": "81643", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -101044,7 +127359,10 @@ "plasmid_name": "p3E-Lact-C2", "sequence-type": "addgene-full", "addgene_id": "109553", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109553.addgene-full.gb" }, @@ -101053,7 +127371,10 @@ "plasmid_name": "TFORF3001", "sequence-type": "addgene-full", "addgene_id": "144477", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144477.addgene-full.gb" }, @@ -101062,7 +127383,6 @@ "plasmid_name": "p41Neo MagicFluor", "sequence-type": "depositor-full", "addgene_id": "58564", - "references": [], "kit": null, "file": "data/addgene_plasmids/58564.depositor-full.gb" }, @@ -101071,7 +127391,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp16", "sequence-type": "addgene-full", "addgene_id": "168845", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168845.addgene-full.gb" }, @@ -101080,7 +127403,10 @@ "plasmid_name": "TFORF3347", "sequence-type": "addgene-full", "addgene_id": "144823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144823.addgene-full.gb" }, @@ -101089,7 +127415,10 @@ "plasmid_name": "pHAGE-EGFR-V843I", "sequence-type": "addgene-full", "addgene_id": "116317", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116317.addgene-full.gb" }, @@ -101098,7 +127427,10 @@ "plasmid_name": "pDONR221_SLC1A4", "sequence-type": "addgene-full", "addgene_id": "131962", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131962.addgene-full.gb" }, @@ -101107,7 +127439,10 @@ "plasmid_name": "TFORF3321", "sequence-type": "addgene-full", "addgene_id": "144797", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144797.addgene-full.gb" }, @@ -101116,7 +127451,10 @@ "plasmid_name": "pEBTetD-SNAP-Centrobin", "sequence-type": "addgene-full", "addgene_id": "136830", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136830.addgene-full.gb" }, @@ -101125,7 +127463,10 @@ "plasmid_name": "pDONR223 SCAF8_isoD", "sequence-type": "addgene-full", "addgene_id": "122467", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "file": "data/addgene_plasmids/122467.addgene-full.gb" }, @@ -101134,7 +127475,6 @@ "plasmid_name": "pSCM167-Venus-VF-hADAM10(aa220-459)", "sequence-type": "addgene-full", "addgene_id": "189555", - "references": [], "kit": null, "file": "data/addgene_plasmids/189555.addgene-full.gb" }, @@ -101143,7 +127483,10 @@ "plasmid_name": "pDONR221-SLC26A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161186", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161186.addgene-full.gb" }, @@ -101152,7 +127495,10 @@ "plasmid_name": "pEBTet-SNAP-Centrin2", "sequence-type": "addgene-full", "addgene_id": "136784", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136784.addgene-full.gb" }, @@ -101161,7 +127507,10 @@ "plasmid_name": "actc1b-mKate2-CaaX(tH)", "sequence-type": "addgene-full", "addgene_id": "109487", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109487.addgene-full.gb" }, @@ -101170,7 +127519,10 @@ "plasmid_name": "pMOS009E: Entry vector for: QuasAr2-mOrange2 voltage sensor (plasma membrane)", "sequence-type": "addgene-full", "addgene_id": "163062", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163062.addgene-full.gb" }, @@ -101179,7 +127531,10 @@ "plasmid_name": "pHAGE-B2M-L13Sfs*31", "sequence-type": "addgene-full", "addgene_id": "116123", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116123.addgene-full.gb" }, @@ -101188,7 +127543,10 @@ "plasmid_name": "pDONR223_CYP3A5_WT", "sequence-type": "addgene-full", "addgene_id": "81823", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -101200,7 +127558,10 @@ "plasmid_name": "pDONR223_ERO1L_WT", "sequence-type": "addgene-full", "addgene_id": "81797", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -101224,7 +127585,10 @@ "plasmid_name": "pMMK ENTR 1 CMV mAG h-Geminin", "sequence-type": "addgene-full", "addgene_id": "206281", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206281.addgene-full.gb" }, @@ -101233,7 +127597,10 @@ "plasmid_name": "CMYA5T2/pDEST17", "sequence-type": "addgene-full", "addgene_id": "98118", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "file": "data/addgene_plasmids/98118.addgene-full.gb" }, @@ -101242,7 +127609,10 @@ "plasmid_name": "pCMV-HA-JMJD2A", "sequence-type": "addgene-full", "addgene_id": "24180", - "references": [], + "references": [ + "https://doi.org/10.1038/nature04837", + "https://www.ncbi.nlm.nih.gov/pubmed/16732293" + ], "kit": null, "file": "data/addgene_plasmids/24180.addgene-full.gb" }, @@ -101251,7 +127621,10 @@ "plasmid_name": "pDONR223_MAP2K5_p.P111S", "sequence-type": "addgene-full", "addgene_id": "81477", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -101263,7 +127636,10 @@ "plasmid_name": "pDONR221-SLC15A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161052", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161052.addgene-full.gb" }, @@ -101272,7 +127648,10 @@ "plasmid_name": "SmoM2 (W535L)-pcw107-V5", "sequence-type": "addgene-full", "addgene_id": "64628", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/64628.addgene-full.gb" }, @@ -101281,7 +127660,10 @@ "plasmid_name": "actc1b-mKate2-Rab41", "sequence-type": "addgene-full", "addgene_id": "109767", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109767.addgene-full.gb" }, @@ -101290,7 +127672,10 @@ "plasmid_name": "TFORF3167", "sequence-type": "addgene-full", "addgene_id": "144643", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144643.addgene-full.gb" }, @@ -101299,7 +127684,10 @@ "plasmid_name": "pHAGE-EGFR-G810S", "sequence-type": "addgene-full", "addgene_id": "116258", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116258.addgene-full.gb" }, @@ -101308,7 +127696,10 @@ "plasmid_name": "IZ801: pMVP (L3-L2) 6x His epitope tag + WPRE", "sequence-type": "addgene-full", "addgene_id": "121761", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121761.addgene-full.gb" }, @@ -101317,7 +127708,6 @@ "plasmid_name": "R777-E266 Hs.RASSF7-nostop", "sequence-type": "addgene-full", "addgene_id": "70550", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -101329,7 +127719,10 @@ "plasmid_name": "pDONR223_EGFR_p.ELREA_746del", "sequence-type": "addgene-full", "addgene_id": "82911", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82911.addgene-full.gb" }, @@ -101338,7 +127731,10 @@ "plasmid_name": "pDONR221-SLC9A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161329", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161329.addgene-full.gb" }, @@ -101347,7 +127743,10 @@ "plasmid_name": "pcDNA6.2EmGFP-cDAXX", "sequence-type": "addgene-full", "addgene_id": "169727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169727.addgene-full.gb" }, @@ -101356,7 +127755,10 @@ "plasmid_name": "pcDNA3.1_FLAG-YAP1", "sequence-type": "addgene-full", "addgene_id": "173001", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/173001.addgene-full.gb" }, @@ -101365,7 +127767,10 @@ "plasmid_name": "CLK2", "sequence-type": "addgene-full", "addgene_id": "155459", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155459.addgene-full.gb" }, @@ -101374,7 +127779,10 @@ "plasmid_name": "pAM97", "sequence-type": "addgene-full", "addgene_id": "226689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226689.addgene-full.gb" }, @@ -101383,7 +127791,10 @@ "plasmid_name": "pDONR221-MTCH2_STOP", "sequence-type": "addgene-full", "addgene_id": "161120", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161120.addgene-full.gb" }, @@ -101392,7 +127803,10 @@ "plasmid_name": "pDONR223_KEAP1_p.G419W", "sequence-type": "addgene-full", "addgene_id": "81505", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -101404,7 +127818,10 @@ "plasmid_name": "HB501: pMVP (L1-L4) RIP", "sequence-type": "addgene-full", "addgene_id": "121688", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121688.addgene-full.gb" }, @@ -101413,7 +127830,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_delta169-189", "sequence-type": "addgene-full", "addgene_id": "187136", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187136.addgene-full.gb" }, @@ -101422,7 +127842,10 @@ "plasmid_name": "TFORF3255", "sequence-type": "addgene-full", "addgene_id": "144731", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144731.addgene-full.gb" }, @@ -101431,7 +127854,10 @@ "plasmid_name": "actc1b-mKate2-rab25b", "sequence-type": "addgene-full", "addgene_id": "109615", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109615.addgene-full.gb" }, @@ -101440,7 +127866,10 @@ "plasmid_name": "pDON223 Spike A570D", "sequence-type": "addgene-full", "addgene_id": "180064", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180064.addgene-full.gb" }, @@ -101449,7 +127878,10 @@ "plasmid_name": "TFORF3409", "sequence-type": "addgene-full", "addgene_id": "144885", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144885.addgene-full.gb" }, @@ -101458,7 +127890,6 @@ "plasmid_name": "pCW57.1_blasti", "sequence-type": "addgene-full", "addgene_id": "194067", - "references": [], "kit": null, "file": "data/addgene_plasmids/194067.addgene-full.gb" }, @@ -101467,7 +127898,10 @@ "plasmid_name": "pLenti4/V5-DEST-AERRIE", "sequence-type": "addgene-full", "addgene_id": "204023", - "references": [], + "references": [ + "https://doi.org/10.3389/fcell.2020.619079", + "https://www.ncbi.nlm.nih.gov/pubmed/33505972" + ], "kit": null, "file": "data/addgene_plasmids/204023.addgene-full.gb" }, @@ -101476,7 +127910,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO-miR-30 R4-R3", "sequence-type": "depositor-full", "addgene_id": "62125", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62125.depositor-full.gb" }, @@ -101485,7 +127922,10 @@ "plasmid_name": "pPB-PGK-destination", "sequence-type": "depositor-full", "addgene_id": "60436", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.08.029", + "https://www.ncbi.nlm.nih.gov/pubmed/25215486" + ], "kit": null, "file": "data/addgene_plasmids/60436.depositor-full.gb" }, @@ -101494,7 +127934,10 @@ "plasmid_name": "p21-P369S-MEFV", "sequence-type": "addgene-full", "addgene_id": "134712", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "file": "data/addgene_plasmids/134712.addgene-full.gb" }, @@ -101503,7 +127946,10 @@ "plasmid_name": "W118-1_hRSK3(RPS6KA2)", "sequence-type": "addgene-full", "addgene_id": "180384", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "file": "data/addgene_plasmids/180384.addgene-full.gb" }, @@ -101512,7 +127958,6 @@ "plasmid_name": "R777-E188 Hs.PPP1CA-nostop", "sequence-type": "depositor-full", "addgene_id": "70472", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -101524,7 +127969,10 @@ "plasmid_name": "pKG-GW1-SRT1", "sequence-type": "addgene-full", "addgene_id": "203171", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "file": "data/addgene_plasmids/203171.addgene-full.gb" }, @@ -101533,7 +127981,10 @@ "plasmid_name": "pThy1-Flpbow1", "sequence-type": "depositor-full", "addgene_id": "45180", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.2450", + "https://www.ncbi.nlm.nih.gov/pubmed/23817127" + ], "kit": null, "file": "data/addgene_plasmids/45180.depositor-full.gb" }, @@ -101542,7 +127993,10 @@ "plasmid_name": "pGWB660-CYCD3;1", "sequence-type": "addgene-full", "addgene_id": "140751", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.16309", + "https://www.ncbi.nlm.nih.gov/pubmed/31679162" + ], "kit": null, "file": "data/addgene_plasmids/140751.addgene-full.gb" }, @@ -101551,7 +128005,10 @@ "plasmid_name": "p35SZ.D", "sequence-type": "depositor-full", "addgene_id": "51512", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51512.depositor-full.gb" }, @@ -101560,7 +128017,10 @@ "plasmid_name": "ADSL_pLX307", "sequence-type": "addgene-full", "addgene_id": "98311", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98311.addgene-full.gb" }, @@ -101569,7 +128029,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-4", "sequence-type": "depositor-full", "addgene_id": "46691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46691.depositor-full.gb" }, @@ -101578,7 +128041,10 @@ "plasmid_name": "pDONR223_RB1_p.Y756C", "sequence-type": "addgene-full", "addgene_id": "82863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82863.addgene-full.gb" }, @@ -101587,7 +128053,6 @@ "plasmid_name": "pDONR221_CDK2AP1_3UTR", "sequence-type": "depositor-full", "addgene_id": "65862", - "references": [], "kit": null, "file": "data/addgene_plasmids/65862.depositor-full.gb" }, @@ -101596,7 +128061,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP9_nostop", "sequence-type": "addgene-full", "addgene_id": "149312", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149312.addgene-full.gb" }, @@ -101605,7 +128073,10 @@ "plasmid_name": "pAG424GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14415", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -101617,7 +128088,10 @@ "plasmid_name": "pDRAV-2", "sequence-type": "depositor-full", "addgene_id": "26747", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1521", + "https://www.ncbi.nlm.nih.gov/pubmed/20953177" + ], "kit": null, "file": "data/addgene_plasmids/26747.depositor-full.gb" }, @@ -101626,7 +128100,10 @@ "plasmid_name": "pAAV2-SynTetOff-myrGFP", "sequence-type": "addgene-full", "addgene_id": "190233", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190233.addgene-full.gb" }, @@ -101635,7 +128112,10 @@ "plasmid_name": "pDONR221-rap1-K651R", "sequence-type": "addgene-full", "addgene_id": "84528", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.185793.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25800674" + ], "kit": null, "file": "data/addgene_plasmids/84528.addgene-full.gb" }, @@ -101644,7 +128124,10 @@ "plasmid_name": "pCZGY2851", "sequence-type": "addgene-full", "addgene_id": "87761", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/87761.addgene-full.gb" }, @@ -101653,7 +128136,10 @@ "plasmid_name": "beta-catenin (S33Y)-pcw107", "sequence-type": "addgene-full", "addgene_id": "64615", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/64615.addgene-full.gb" }, @@ -101662,7 +128148,10 @@ "plasmid_name": "LB901: pMVP/PB/Blast-DEST", "sequence-type": "addgene-full", "addgene_id": "121873", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121873.addgene-full.gb" }, @@ -101671,7 +128160,10 @@ "plasmid_name": "pLentipuro3/TO/V5-GW/EGFP-Firefly Luciferase", "sequence-type": "addgene-full", "addgene_id": "119816", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-018-0112-8", + "https://www.ncbi.nlm.nih.gov/pubmed/30683938" + ], "kit": null, "file": "data/addgene_plasmids/119816.addgene-full.gb" }, @@ -101680,7 +128172,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158193", - "references": [], "kit": null, "file": "data/addgene_plasmids/158193.addgene-full.gb" }, @@ -101689,7 +128180,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF6_stop", "sequence-type": "addgene-full", "addgene_id": "168563", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168563.addgene-full.gb" }, @@ -101698,7 +128192,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MTUS1", "sequence-type": "addgene-full", "addgene_id": "192298", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192298.addgene-full.gb" }, @@ -101707,7 +128204,10 @@ "plasmid_name": "PNRC2", "sequence-type": "addgene-full", "addgene_id": "155830", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155830.addgene-full.gb" }, @@ -101716,7 +128216,10 @@ "plasmid_name": "pHAGE-EGFR-L62R", "sequence-type": "addgene-full", "addgene_id": "116265", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116265.addgene-full.gb" }, @@ -101725,7 +128228,10 @@ "plasmid_name": "TFORF3475", "sequence-type": "addgene-full", "addgene_id": "144951", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144951.addgene-full.gb" }, @@ -101734,7 +128240,10 @@ "plasmid_name": "pENTR-HOXA1", "sequence-type": "addgene-full", "addgene_id": "47054", - "references": [], + "references": [ + "https://doi.org/10.1126/scitranslmed.3002166", + "https://www.ncbi.nlm.nih.gov/pubmed/21653829" + ], "kit": null, "file": "data/addgene_plasmids/47054.addgene-full.gb" }, @@ -101743,7 +128252,10 @@ "plasmid_name": "R620-M11-303: CMV51p> SARS-CoV-2 S(1-1213)-2P-T4f-His6", "sequence-type": "addgene-full", "addgene_id": "170195", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/170195.addgene-full.gb" }, @@ -101752,7 +128264,10 @@ "plasmid_name": "LIIIbeta fin", "sequence-type": "depositor-full", "addgene_id": "54388", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54388.depositor-full.gb" }, @@ -101761,7 +128276,10 @@ "plasmid_name": "pAG416GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14172", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -101773,7 +128291,10 @@ "plasmid_name": "pDONR223_HTR4_p.T105M", "sequence-type": "addgene-full", "addgene_id": "81731", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -101785,7 +128306,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK9_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189873", - "references": [], "kit": null, "file": "data/addgene_plasmids/189873.addgene-full.gb" }, @@ -101794,7 +128314,10 @@ "plasmid_name": "pDONR221-SLC30A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161314", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161314.addgene-full.gb" }, @@ -101803,7 +128326,10 @@ "plasmid_name": "pAM-PAT-ProTTG1 GW", "sequence-type": "depositor-full", "addgene_id": "79753", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.0060141", + "https://www.ncbi.nlm.nih.gov/pubmed/18547143" + ], "kit": null, "file": "data/addgene_plasmids/79753.depositor-full.gb" }, @@ -101812,7 +128338,10 @@ "plasmid_name": "p{3P3-mTurquoise::FRT,attB}", "sequence-type": "addgene-full", "addgene_id": "182180", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182180.addgene-full.gb" }, @@ -101821,7 +128350,10 @@ "plasmid_name": "pDONR223_NMNAT3_WT", "sequence-type": "addgene-full", "addgene_id": "81885", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -101833,7 +128365,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp9", "sequence-type": "addgene-full", "addgene_id": "168937", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168937.addgene-full.gb" }, @@ -101842,7 +128377,10 @@ "plasmid_name": "pHAGE-BRAF-M53I", "sequence-type": "addgene-full", "addgene_id": "116185", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116185.addgene-full.gb" }, @@ -101851,7 +128389,10 @@ "plasmid_name": "TFORF3029", "sequence-type": "addgene-full", "addgene_id": "144505", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144505.addgene-full.gb" }, @@ -101860,7 +128401,6 @@ "plasmid_name": "pTwist-ENTR-ENST00000663481.1", "sequence-type": "addgene-full", "addgene_id": "192752", - "references": [], "kit": null, "file": "data/addgene_plasmids/192752.addgene-full.gb" }, @@ -101869,7 +128409,10 @@ "plasmid_name": "SFRS10", "sequence-type": "addgene-full", "addgene_id": "156007", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156007.addgene-full.gb" }, @@ -101878,7 +128421,10 @@ "plasmid_name": "pDONR221_SLC49A3", "sequence-type": "depositor-full", "addgene_id": "132168", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132168.depositor-full.gb" }, @@ -101887,7 +128433,10 @@ "plasmid_name": "pDONR221_SLC25A20", "sequence-type": "addgene-full", "addgene_id": "132027", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132027.addgene-full.gb" }, @@ -101896,7 +128445,10 @@ "plasmid_name": "pLenti PGK Blast DEST (w524-1)", "sequence-type": "depositor-full", "addgene_id": "19065", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/19065.depositor-full.gb" }, @@ -101905,7 +128457,6 @@ "plasmid_name": "R777-E008 Hs.ALK-nostop", "sequence-type": "depositor-full", "addgene_id": "70292", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -101917,7 +128468,6 @@ "plasmid_name": "R777-E224 Hs.RAPGEF1-nostop", "sequence-type": "depositor-full", "addgene_id": "70508", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -101929,7 +128479,10 @@ "plasmid_name": "Native promoter dCas9", "sequence-type": "addgene-full", "addgene_id": "113656", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.8b00426", + "https://www.ncbi.nlm.nih.gov/pubmed/30703321" + ], "kit": null, "file": "data/addgene_plasmids/113656.addgene-full.gb" }, @@ -101938,7 +128491,10 @@ "plasmid_name": "pTW081", "sequence-type": "addgene-full", "addgene_id": "115929", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115929.addgene-full.gb" }, @@ -101947,7 +128503,6 @@ "plasmid_name": "pMP71-HLA-B15-His", "sequence-type": "addgene-full", "addgene_id": "104848", - "references": [], "kit": null, "file": "data/addgene_plasmids/104848.addgene-full.gb" }, @@ -101956,7 +128511,10 @@ "plasmid_name": "PL-5LTR-RGR(DMD\u200b#\u200b1\u200b)-AmCyan-A", "sequence-type": "addgene-full", "addgene_id": "138482", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-14957-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32170079" + ], "kit": null, "file": "data/addgene_plasmids/138482.addgene-full.gb" }, @@ -101965,7 +128523,10 @@ "plasmid_name": "pDONR223_SPATA8_p.P83T", "sequence-type": "addgene-full", "addgene_id": "81260", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -101977,7 +128538,6 @@ "plasmid_name": "IDG_CLCA2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161645", - "references": [], "kit": null, "file": "data/addgene_plasmids/161645.addgene-full.gb" }, @@ -101986,7 +128546,10 @@ "plasmid_name": "MAC_C_H31", "sequence-type": "addgene-full", "addgene_id": "111666", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111666.addgene-full.gb" }, @@ -101995,7 +128558,10 @@ "plasmid_name": "pENTR-ERKKTRClover", "sequence-type": "addgene-full", "addgene_id": "59138", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59138.addgene-full.gb" }, @@ -102004,7 +128570,10 @@ "plasmid_name": "p35S-hKO1", "sequence-type": "addgene-full", "addgene_id": "182731", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182731.addgene-full.gb" }, @@ -102013,7 +128582,10 @@ "plasmid_name": "pHAGE-ERBB2", "sequence-type": "addgene-full", "addgene_id": "116734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116734.addgene-full.gb" }, @@ -102022,7 +128594,6 @@ "plasmid_name": "pLEX307-TMPRSS2-G418", "sequence-type": "addgene-full", "addgene_id": "158459", - "references": [], "kit": null, "file": "data/addgene_plasmids/158459.addgene-full.gb" }, @@ -102031,7 +128602,10 @@ "plasmid_name": "pAC92-pmax-dCas9VP96", "sequence-type": "depositor-full", "addgene_id": "48224", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/48224.depositor-full.gb" }, @@ -102040,7 +128614,6 @@ "plasmid_name": "pDD346", "sequence-type": "addgene-full", "addgene_id": "133311", - "references": [], "kit": null, "file": "data/addgene_plasmids/133311.addgene-full.gb" }, @@ -102049,7 +128622,10 @@ "plasmid_name": "pRATIO2212", "sequence-type": "addgene-full", "addgene_id": "141302", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141302.addgene-full.gb" }, @@ -102058,7 +128634,10 @@ "plasmid_name": "pHAGE-PIK3CA-H1047R", "sequence-type": "addgene-full", "addgene_id": "116500", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116500.addgene-full.gb" }, @@ -102067,7 +128646,10 @@ "plasmid_name": "pDONR221_SLC4A3", "sequence-type": "addgene-full", "addgene_id": "132288", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132288.addgene-full.gb" }, @@ -102076,7 +128658,9 @@ "plasmid_name": "pMpGWB427", "sequence-type": "depositor-full", "addgene_id": "68692", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68692.depositor-full.gb" }, @@ -102085,7 +128669,10 @@ "plasmid_name": "mpeg:Rab7-stop-polyA; cmlc2:GFP", "sequence-type": "addgene-full", "addgene_id": "213738", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abp8321", + "https://www.ncbi.nlm.nih.gov/pubmed/36044568" + ], "kit": null, "file": "data/addgene_plasmids/213738.addgene-full.gb" }, @@ -102094,7 +128681,10 @@ "plasmid_name": "Silene_conica _PheRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202659", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "file": "data/addgene_plasmids/202659.addgene-full.gb" }, @@ -102103,7 +128693,10 @@ "plasmid_name": "pEAHISSOarD1", "sequence-type": "addgene-full", "addgene_id": "97067", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97067.addgene-full.gb" }, @@ -102112,7 +128705,10 @@ "plasmid_name": "pGGEV_+1_XcmI-LacZ", "sequence-type": "depositor-full", "addgene_id": "49295", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -102124,7 +128720,6 @@ "plasmid_name": "His8:MBP-tev-Phe-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83384", - "references": [], "kit": null, "file": "data/addgene_plasmids/83384.addgene-full.gb" }, @@ -102133,7 +128728,6 @@ "plasmid_name": "R777-E262 Hs.RASSF5-nostop", "sequence-type": "depositor-full", "addgene_id": "70546", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -102145,7 +128739,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj10a-IRES-EGFP", "sequence-type": "addgene-full", "addgene_id": "164947", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164947.addgene-full.gb" }, @@ -102154,7 +128751,10 @@ "plasmid_name": "Flag-HA-USP13", "sequence-type": "addgene-full", "addgene_id": "22568", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22568.addgene-full.gb" }, @@ -102163,7 +128763,10 @@ "plasmid_name": "pDONR221-SVOP_STOP", "sequence-type": "addgene-full", "addgene_id": "161471", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161471.addgene-full.gb" }, @@ -102172,7 +128775,9 @@ "plasmid_name": "pDRF\u2019- AmTryoshka1;3-GS", "sequence-type": "addgene-full", "addgene_id": "100967", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28874729" + ], "kit": null, "file": "data/addgene_plasmids/100967.addgene-full.gb" }, @@ -102181,7 +128786,10 @@ "plasmid_name": "pT2-cryR;tmem88aCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90135", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90135.addgene-full.gb" }, @@ -102190,7 +128798,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV NS1", "sequence-type": "addgene-full", "addgene_id": "145362", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145362.addgene-full.gb" }, @@ -102199,7 +128810,10 @@ "plasmid_name": "pAG425GAL-ccdB", "sequence-type": "addgene-full", "addgene_id": "14153", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -102211,7 +128825,10 @@ "plasmid_name": "pDONR223_IRAK4_WT", "sequence-type": "addgene-full", "addgene_id": "82286", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82286.addgene-full.gb" }, @@ -102220,7 +128837,10 @@ "plasmid_name": "pSGE_768_Nhe2-EcR_dCP", "sequence-type": "depositor-full", "addgene_id": "71223", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71223.depositor-full.gb" }, @@ -102229,7 +128849,10 @@ "plasmid_name": "C238-E07: attB2r-SV40polyA-attB3", "sequence-type": "addgene-full", "addgene_id": "162917", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -102241,7 +128864,10 @@ "plasmid_name": "piggyBac_rtTA (4th_Gen)_SNCA_IRES_NGN2-2A-PURO_Synapsin-BirA (pEHA1623)", "sequence-type": "addgene-full", "addgene_id": "209085", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.05.008", + "https://www.ncbi.nlm.nih.gov/pubmed/35688132" + ], "kit": null, "file": "data/addgene_plasmids/209085.addgene-full.gb" }, @@ -102250,7 +128876,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3B WT", "sequence-type": "addgene-full", "addgene_id": "123092", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123092.addgene-full.gb" }, @@ -102259,7 +128888,10 @@ "plasmid_name": "pShuttle-PR.CC9", "sequence-type": "addgene-full", "addgene_id": "192932", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "file": "data/addgene_plasmids/192932.addgene-full.gb" }, @@ -102268,7 +128900,10 @@ "plasmid_name": "pDONR221_SLC3A2", "sequence-type": "addgene-full", "addgene_id": "132213", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132213.addgene-full.gb" }, @@ -102277,7 +128912,10 @@ "plasmid_name": "p667-UBC-NRF2-E79Q-V5-miniTurbo", "sequence-type": "addgene-full", "addgene_id": "207814", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207814.addgene-full.gb" }, @@ -102286,7 +128924,10 @@ "plasmid_name": "pWOL-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209365", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209365.addgene-full.gb" }, @@ -102295,7 +128936,10 @@ "plasmid_name": "pDONR223_TCF4_WT", "sequence-type": "addgene-full", "addgene_id": "82166", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82166.addgene-full.gb" }, @@ -102304,7 +128948,10 @@ "plasmid_name": "pAAV2ss-EFS-GFP-synPolyA-U6-sgHTT1", "sequence-type": "addgene-full", "addgene_id": "190902", - "references": [], + "references": [ + "https://doi.org/10.1016/j.omtm.2023.03.013", + "https://www.ncbi.nlm.nih.gov/pubmed/37090478" + ], "kit": null, "file": "data/addgene_plasmids/190902.addgene-full.gb" }, @@ -102313,7 +128960,10 @@ "plasmid_name": "pcDNA4/TO/GFP-TTP", "sequence-type": "addgene-full", "addgene_id": "141190", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.03.006", + "https://www.ncbi.nlm.nih.gov/pubmed/30917308" + ], "kit": null, "file": "data/addgene_plasmids/141190.addgene-full.gb" }, @@ -102322,7 +128972,10 @@ "plasmid_name": "pHAGE-SMO", "sequence-type": "addgene-full", "addgene_id": "116792", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116792.addgene-full.gb" }, @@ -102331,7 +128984,6 @@ "plasmid_name": "R777-E092 Hs.FLT3-nostop", "sequence-type": "depositor-full", "addgene_id": "70376", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -102343,7 +128995,10 @@ "plasmid_name": "pHAGE-MAP2K5__IQCH", "sequence-type": "addgene-full", "addgene_id": "116826", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116826.addgene-full.gb" }, @@ -102352,7 +129007,10 @@ "plasmid_name": "R701-X58-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) Q61R", "sequence-type": "addgene-full", "addgene_id": "159566", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159566.addgene-full.gb" }, @@ -102361,7 +129019,10 @@ "plasmid_name": "pSGE_717_S2-1_CGCG-to-DFD", "sequence-type": "depositor-full", "addgene_id": "71174", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71174.depositor-full.gb" }, @@ -102370,7 +129031,10 @@ "plasmid_name": "pCR8 PALI1", "sequence-type": "addgene-full", "addgene_id": "114442", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "file": "data/addgene_plasmids/114442.addgene-full.gb" }, @@ -102379,7 +129043,10 @@ "plasmid_name": "#1.4 post-R-SynapShot-Lyn-miRFP670", "sequence-type": "addgene-full", "addgene_id": "214718", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-023-02122-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38191933" + ], "kit": null, "file": "data/addgene_plasmids/214718.addgene-full.gb" }, @@ -102388,7 +129055,10 @@ "plasmid_name": "pENTR L5-QF-L2", "sequence-type": "depositor-full", "addgene_id": "32305", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32305.depositor-full.gb" }, @@ -102397,7 +129067,10 @@ "plasmid_name": "pME GFP-PCNA", "sequence-type": "addgene-full", "addgene_id": "105977", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105977.addgene-full.gb" }, @@ -102406,7 +129079,10 @@ "plasmid_name": "pGWB505", "sequence-type": "depositor-full", "addgene_id": "74847", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74847.depositor-full.gb" }, @@ -102415,7 +129091,10 @@ "plasmid_name": "R713-M52-303: CMV51p> Halotag-NRasHVR", "sequence-type": "addgene-full", "addgene_id": "159686", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "file": "data/addgene_plasmids/159686.addgene-full.gb" }, @@ -102424,7 +129103,10 @@ "plasmid_name": "pDONR221-Utp11", "sequence-type": "addgene-full", "addgene_id": "99984", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99984.addgene-full.gb" }, @@ -102433,7 +129115,6 @@ "plasmid_name": "pAG416GAL-2x-uA-BWCoV-SW1_3CL", "sequence-type": "addgene-full", "addgene_id": "201936", - "references": [], "kit": null, "file": "data/addgene_plasmids/201936.addgene-full.gb" }, @@ -102442,7 +129123,6 @@ "plasmid_name": "pEXP1-DEST-Noa1-HIS", "sequence-type": "addgene-full", "addgene_id": "191972", - "references": [], "kit": null, "file": "data/addgene_plasmids/191972.addgene-full.gb" }, @@ -102451,7 +129131,10 @@ "plasmid_name": "pHAGE-PIK3CA-E39K", "sequence-type": "addgene-full", "addgene_id": "116472", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116472.addgene-full.gb" }, @@ -102460,7 +129143,10 @@ "plasmid_name": "pCAG/ATP10D-HA", "sequence-type": "addgene-full", "addgene_id": "209217", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209217.addgene-full.gb" }, @@ -102469,7 +129155,6 @@ "plasmid_name": "pREP81xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79019", - "references": [], "kit": null, "file": "data/addgene_plasmids/79019.depositor-full.gb" }, @@ -102478,7 +129163,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST CDC42EP1 S192A", "sequence-type": "depositor-full", "addgene_id": "69820", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "file": "data/addgene_plasmids/69820.depositor-full.gb" }, @@ -102487,7 +129175,6 @@ "plasmid_name": "pSMPUW_6.11_M3_Ef1a-gateway-HA-SV40", "sequence-type": "addgene-full", "addgene_id": "128447", - "references": [], "kit": null, "file": "data/addgene_plasmids/128447.addgene-full.gb" }, @@ -102496,7 +129183,6 @@ "plasmid_name": "pENTR-L4R1-PHtetO2", "sequence-type": "addgene-full", "addgene_id": "139526", - "references": [], "kit": null, "file": "data/addgene_plasmids/139526.addgene-full.gb" }, @@ -102505,7 +129191,6 @@ "plasmid_name": "IDG_BEST4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161678", - "references": [], "kit": null, "file": "data/addgene_plasmids/161678.addgene-full.gb" }, @@ -102514,7 +129199,10 @@ "plasmid_name": "LIIbeta F 2-3", "sequence-type": "depositor-full", "addgene_id": "54358", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54358.depositor-full.gb" }, @@ -102523,7 +129211,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PRPF4B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214463", - "references": [], "kit": null, "file": "data/addgene_plasmids/214463.addgene-full.gb" }, @@ -102532,7 +129219,6 @@ "plasmid_name": "R777-E327 Hs.SPRY1", "sequence-type": "depositor-full", "addgene_id": "70611", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -102544,7 +129230,10 @@ "plasmid_name": "pDONR221_SLC39A3", "sequence-type": "addgene-full", "addgene_id": "132081", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132081.addgene-full.gb" }, @@ -102553,7 +129242,6 @@ "plasmid_name": "pLEX307-CTSB-blast", "sequence-type": "addgene-full", "addgene_id": "158464", - "references": [], "kit": null, "file": "data/addgene_plasmids/158464.addgene-full.gb" }, @@ -102562,7 +129250,10 @@ "plasmid_name": "pHAGE-XPO1-R749Q", "sequence-type": "addgene-full", "addgene_id": "116709", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116709.addgene-full.gb" }, @@ -102571,7 +129262,10 @@ "plasmid_name": "pAcBac1-Mb-Fluoro-Phe B5", "sequence-type": "addgene-full", "addgene_id": "197576", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-35761-w", + "https://www.ncbi.nlm.nih.gov/pubmed/36599844" + ], "kit": null, "file": "data/addgene_plasmids/197576.addgene-full.gb" }, @@ -102580,7 +129274,6 @@ "plasmid_name": "R777-E054 Hs.EGFR-nostop", "sequence-type": "depositor-full", "addgene_id": "70338", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -102592,7 +129285,10 @@ "plasmid_name": "TFORF3548", "sequence-type": "depositor-full", "addgene_id": "145024", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145024.depositor-full.gb" }, @@ -102601,7 +129297,10 @@ "plasmid_name": "pDONR223_MAGEC2_p.E269K", "sequence-type": "addgene-full", "addgene_id": "81389", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -102613,7 +129312,10 @@ "plasmid_name": "MAC_N_KLF12", "sequence-type": "addgene-full", "addgene_id": "167767", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167767.addgene-full.gb" }, @@ -102622,7 +129324,10 @@ "plasmid_name": "pDest_U6_A2_CG2_T1_gRNA", "sequence-type": "addgene-full", "addgene_id": "199387", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "file": "data/addgene_plasmids/199387.addgene-full.gb" }, @@ -102631,7 +129336,10 @@ "plasmid_name": "pAG414GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14311", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -102643,7 +129351,10 @@ "plasmid_name": "pDONR221_SLC44A5", "sequence-type": "addgene-full", "addgene_id": "132155", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132155.addgene-full.gb" }, @@ -102652,7 +129363,10 @@ "plasmid_name": "pDONR_221_middle-entry_NanoLuc", "sequence-type": "addgene-full", "addgene_id": "128673", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11259-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31366908" + ], "kit": null, "file": "data/addgene_plasmids/128673.addgene-full.gb" }, @@ -102661,7 +129375,6 @@ "plasmid_name": "EEF1A2 - E122K in pENTR", "sequence-type": "addgene-full", "addgene_id": "216587", - "references": [], "kit": null, "file": "data/addgene_plasmids/216587.addgene-full.gb" }, @@ -102670,7 +129383,10 @@ "plasmid_name": "pWS494", "sequence-type": "addgene-full", "addgene_id": "123034", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123034.addgene-full.gb" }, @@ -102679,7 +129395,10 @@ "plasmid_name": "pGWB415", "sequence-type": "depositor-full", "addgene_id": "74809", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74809.depositor-full.gb" }, @@ -102688,7 +129407,10 @@ "plasmid_name": "pCM1.127", "sequence-type": "depositor-full", "addgene_id": "21384", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21384.depositor-full.gb" }, @@ -102697,7 +129419,10 @@ "plasmid_name": "VanGlow-GL-DSCP", "sequence-type": "depositor-full", "addgene_id": "83338", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.01.014", + "https://www.ncbi.nlm.nih.gov/pubmed/28245922" + ], "kit": null, "file": "data/addgene_plasmids/83338.depositor-full.gb" }, @@ -102706,7 +129431,10 @@ "plasmid_name": "pLenti-PGK-flag-RAP1B-V12-neo", "sequence-type": "addgene-full", "addgene_id": "156175", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156175.addgene-full.gb" }, @@ -102715,7 +129443,10 @@ "plasmid_name": "UAS:Zebrabow-V", "sequence-type": "addgene-full", "addgene_id": "118218", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094631", + "https://www.ncbi.nlm.nih.gov/pubmed/23757414" + ], "kit": null, "file": "data/addgene_plasmids/118218.addgene-full.gb" }, @@ -102724,7 +129455,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0527-luc2", "sequence-type": "addgene-full", "addgene_id": "214657", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214657.addgene-full.gb" }, @@ -102733,7 +129467,10 @@ "plasmid_name": "pDONR223_PAK1_WT", "sequence-type": "addgene-full", "addgene_id": "82220", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82220.addgene-full.gb" }, @@ -102742,7 +129479,10 @@ "plasmid_name": "pLX307 DEDD", "sequence-type": "addgene-full", "addgene_id": "117744", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117744.addgene-full.gb" }, @@ -102751,7 +129491,10 @@ "plasmid_name": "pENTR223-BFRF0.5", "sequence-type": "addgene-full", "addgene_id": "195772", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195772.addgene-full.gb" }, @@ -102760,7 +129503,10 @@ "plasmid_name": "pQCXIB CMV/TO DEST (w320-1)", "sequence-type": "depositor-full", "addgene_id": "17400", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17400.depositor-full.gb" }, @@ -102769,7 +129515,10 @@ "plasmid_name": "pDONR221-ZNF883", "sequence-type": "depositor-full", "addgene_id": "101608", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101608.depositor-full.gb" }, @@ -102778,7 +129527,10 @@ "plasmid_name": "Flag-HA-OTUD6B", "sequence-type": "addgene-full", "addgene_id": "22555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22555.addgene-full.gb" }, @@ -102787,7 +129539,10 @@ "plasmid_name": "pME-mCherry-PA-Rac1", "sequence-type": "addgene-full", "addgene_id": "169042", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2020.05.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32516597" + ], "kit": null, "file": "data/addgene_plasmids/169042.addgene-full.gb" }, @@ -102796,7 +129551,10 @@ "plasmid_name": "pKH159_FLAG-APEX2-YIPF4 WT", "sequence-type": "addgene-full", "addgene_id": "214978", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "file": "data/addgene_plasmids/214978.addgene-full.gb" }, @@ -102805,7 +129563,10 @@ "plasmid_name": "pENTR-L3-Cas9n-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141044", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141044.addgene-full.gb" }, @@ -102814,7 +129575,10 @@ "plasmid_name": "pHAGE-PTPN11-Q79R", "sequence-type": "addgene-full", "addgene_id": "116646", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116646.addgene-full.gb" }, @@ -102823,7 +129587,6 @@ "plasmid_name": "pFRT-TODestFLAGHA_HuB", "sequence-type": "depositor-full", "addgene_id": "65755", - "references": [], "kit": null, "file": "data/addgene_plasmids/65755.depositor-full.gb" }, @@ -102832,7 +129595,10 @@ "plasmid_name": "pLV-PLXNB2-mRBD", "sequence-type": "addgene-full", "addgene_id": "86240", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01667-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33514835" + ], "kit": null, "file": "data/addgene_plasmids/86240.addgene-full.gb" }, @@ -102841,7 +129607,10 @@ "plasmid_name": "pLCS105", "sequence-type": "addgene-full", "addgene_id": "209358", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209358.addgene-full.gb" }, @@ -102850,7 +129619,10 @@ "plasmid_name": "pDEST-EGFP-TARG1", "sequence-type": "addgene-full", "addgene_id": "172586", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172586.addgene-full.gb" }, @@ -102859,7 +129631,10 @@ "plasmid_name": "pDONR223_BTC_p.P70S", "sequence-type": "addgene-full", "addgene_id": "81312", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -102871,7 +129646,10 @@ "plasmid_name": "pDest-659 (attR4-attR3)", "sequence-type": "addgene-full", "addgene_id": "161883", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -102883,7 +129661,10 @@ "plasmid_name": "W279A-short-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "195409", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/195409.addgene-full.gb" }, @@ -102892,7 +129673,9 @@ "plasmid_name": "acta2_GFP_pA_pDestTolpA2", "sequence-type": "depositor-full", "addgene_id": "78684", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24594685" + ], "kit": null, "file": "data/addgene_plasmids/78684.depositor-full.gb" }, @@ -102901,7 +129684,10 @@ "plasmid_name": "pPB-DEST-R5R4-pPuroTK", "sequence-type": "addgene-full", "addgene_id": "141060", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141060.addgene-full.gb" }, @@ -102910,7 +129696,10 @@ "plasmid_name": "pDONR223-MAP3K11", "sequence-type": "addgene-full", "addgene_id": "23473", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -102922,7 +129711,10 @@ "plasmid_name": "bArr1-V5", "sequence-type": "addgene-full", "addgene_id": "201492", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbc.2023.105107", + "https://www.ncbi.nlm.nih.gov/pubmed/37517699" + ], "kit": null, "file": "data/addgene_plasmids/201492.addgene-full.gb" }, @@ -102931,7 +129723,6 @@ "plasmid_name": "R777-E230 Hs.RASA2-nostop", "sequence-type": "depositor-full", "addgene_id": "70514", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -102943,7 +129734,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-EEF2K_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170592", - "references": [], "kit": null, "file": "data/addgene_plasmids/170592.addgene-full.gb" }, @@ -102952,7 +129742,10 @@ "plasmid_name": "Moe-pDONR221", "sequence-type": "addgene-full", "addgene_id": "124239", - "references": [], + "references": [ + "https://doi.org/10.1002/cbin.10607", + "https://www.ncbi.nlm.nih.gov/pubmed/27006187" + ], "kit": null, "file": "data/addgene_plasmids/124239.addgene-full.gb" }, @@ -102961,7 +129754,10 @@ "plasmid_name": "pGWT35S-OEP7-mCherry", "sequence-type": "addgene-full", "addgene_id": "182587", - "references": [], + "references": [ + "https://doi.org/10.7717/peerj.3779", + "https://www.ncbi.nlm.nih.gov/pubmed/28894649" + ], "kit": null, "file": "data/addgene_plasmids/182587.addgene-full.gb" }, @@ -102970,7 +129766,10 @@ "plasmid_name": "pDONR223_OR2T33_p.W147C", "sequence-type": "addgene-full", "addgene_id": "81336", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -102982,7 +129781,10 @@ "plasmid_name": "pDONR223-ADRBK2", "sequence-type": "addgene-full", "addgene_id": "23793", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -102994,7 +129796,10 @@ "plasmid_name": "pHAGE-PIK3CG-R544*", "sequence-type": "addgene-full", "addgene_id": "116582", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116582.addgene-full.gb" }, @@ -103003,7 +129808,10 @@ "plasmid_name": "pDONR223-SGK", "sequence-type": "addgene-full", "addgene_id": "23708", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -103015,7 +129823,10 @@ "plasmid_name": "pHAGE-PIK3CA-P104L", "sequence-type": "addgene-full", "addgene_id": "116519", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116519.addgene-full.gb" }, @@ -103024,7 +129835,10 @@ "plasmid_name": "pDONR221-NIPAL3", "sequence-type": "addgene-full", "addgene_id": "132291", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132291.addgene-full.gb" }, @@ -103033,7 +129847,10 @@ "plasmid_name": "pCFJ1410 - [1-2] ENTR - Fluor - mCherry(PATCs, NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159859", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159859.addgene-full.gb" }, @@ -103042,7 +129859,10 @@ "plasmid_name": "MIS18A_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176996", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176996.addgene-full.gb" }, @@ -103051,7 +129871,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP13", "sequence-type": "addgene-full", "addgene_id": "169386", - "references": [], "kit": null, "file": "data/addgene_plasmids/169386.addgene-full.gb" }, @@ -103060,7 +129879,10 @@ "plasmid_name": "pDONR223_ATF2_WT", "sequence-type": "addgene-full", "addgene_id": "82204", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82204.addgene-full.gb" }, @@ -103069,7 +129891,10 @@ "plasmid_name": "p2R3a-3xVenusYFP-OcsT", "sequence-type": "depositor-full", "addgene_id": "71271", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71271.depositor-full.gb" }, @@ -103078,7 +129903,10 @@ "plasmid_name": "pENTR1A hu_ncOGT WT", "sequence-type": "addgene-full", "addgene_id": "154281", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154281.addgene-full.gb" }, @@ -103087,7 +129915,10 @@ "plasmid_name": "pENTR1A no ccDB (w48-1)", "sequence-type": "addgene-full", "addgene_id": "17398", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17398.addgene-full.gb" }, @@ -103096,7 +129927,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(L301R/V303R/V306R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128657", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128657.addgene-full.gb" }, @@ -103105,7 +129939,10 @@ "plasmid_name": "pDONR221_SLC6A12", "sequence-type": "addgene-full", "addgene_id": "132171", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132171.addgene-full.gb" }, @@ -103114,7 +129951,10 @@ "plasmid_name": "pDN-LexAOx4-mNeonGreen", "sequence-type": "addgene-full", "addgene_id": "192604", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.aay9209", + "https://www.ncbi.nlm.nih.gov/pubmed/32128416" + ], "kit": null, "file": "data/addgene_plasmids/192604.addgene-full.gb" }, @@ -103123,7 +129963,10 @@ "plasmid_name": "pGEMHE-mScarlet-hCenpC", "sequence-type": "addgene-full", "addgene_id": "171490", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2021.04.013", + "https://www.ncbi.nlm.nih.gov/pubmed/33964210" + ], "kit": null, "file": "data/addgene_plasmids/171490.addgene-full.gb" }, @@ -103132,7 +129975,9 @@ "plasmid_name": "pDEST mfap4:icre-p2a-tomato", "sequence-type": "addgene-full", "addgene_id": "135217", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "file": "data/addgene_plasmids/135217.addgene-full.gb" }, @@ -103141,7 +129986,10 @@ "plasmid_name": "MSCV-N E4orf1", "sequence-type": "addgene-full", "addgene_id": "38063", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "file": "data/addgene_plasmids/38063.addgene-full.gb" }, @@ -103150,7 +129998,10 @@ "plasmid_name": "pGGEV_3'_Linker", "sequence-type": "depositor-full", "addgene_id": "49289", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -103162,7 +130013,10 @@ "plasmid_name": "pDONR223_RHOA_p.S85F", "sequence-type": "addgene-full", "addgene_id": "81279", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -103174,7 +130028,10 @@ "plasmid_name": "pCIpA102-G-HLA-A2_GFP", "sequence-type": "addgene-full", "addgene_id": "85162", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201343671", + "https://www.ncbi.nlm.nih.gov/pubmed/24293164" + ], "kit": null, "file": "data/addgene_plasmids/85162.addgene-full.gb" }, @@ -103183,7 +130040,10 @@ "plasmid_name": "pJW4.15", "sequence-type": "depositor-full", "addgene_id": "62870", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62870.depositor-full.gb" }, @@ -103192,7 +130052,10 @@ "plasmid_name": "pWZL Neo Myr Flag GRK5", "sequence-type": "addgene-full", "addgene_id": "20495", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20495.addgene-full.gb" }, @@ -103201,7 +130064,10 @@ "plasmid_name": "pTW082", "sequence-type": "addgene-full", "addgene_id": "115930", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115930.addgene-full.gb" }, @@ -103210,7 +130076,10 @@ "plasmid_name": "pMx/ATP10B-HA", "sequence-type": "addgene-full", "addgene_id": "209233", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209233.addgene-full.gb" }, @@ -103219,7 +130088,6 @@ "plasmid_name": "pSMPUW_8.3_M4_CAMKIIA-gateway-V5-SV40-Zeo", "sequence-type": "addgene-full", "addgene_id": "128463", - "references": [], "kit": null, "file": "data/addgene_plasmids/128463.addgene-full.gb" }, @@ -103228,7 +130096,6 @@ "plasmid_name": "pDONR221-APN", "sequence-type": "addgene-full", "addgene_id": "158440", - "references": [], "kit": null, "file": "data/addgene_plasmids/158440.addgene-full.gb" }, @@ -103237,7 +130104,10 @@ "plasmid_name": "pCellFree_G09", "sequence-type": "depositor-full", "addgene_id": "67143", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "file": "data/addgene_plasmids/67143.depositor-full.gb" }, @@ -103246,7 +130116,10 @@ "plasmid_name": "THOC6", "sequence-type": "addgene-full", "addgene_id": "156085", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156085.addgene-full.gb" }, @@ -103255,7 +130128,10 @@ "plasmid_name": "pQCXIN- myc ULK1 K46I", "sequence-type": "addgene-full", "addgene_id": "27627", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1196371", + "https://www.ncbi.nlm.nih.gov/pubmed/21205641" + ], "kit": null, "file": "data/addgene_plasmids/27627.addgene-full.gb" }, @@ -103264,7 +130140,10 @@ "plasmid_name": "pGWT35S-KOC169-MXMT", "sequence-type": "addgene-full", "addgene_id": "182728", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182728.addgene-full.gb" }, @@ -103273,7 +130152,10 @@ "plasmid_name": "pYPQ292-E848A", "sequence-type": "addgene-full", "addgene_id": "129681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129681.addgene-full.gb" }, @@ -103282,7 +130164,10 @@ "plasmid_name": "R989-X10-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) G12V", "sequence-type": "addgene-full", "addgene_id": "159542", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159542.addgene-full.gb" }, @@ -103291,7 +130176,10 @@ "plasmid_name": "EGFP-Mm_MyoGEF(WT)", "sequence-type": "addgene-full", "addgene_id": "136325", - "references": [], + "references": [ + "https://doi.org/10.1038/nm.4364", + "https://www.ncbi.nlm.nih.gov/pubmed/28692064" + ], "kit": null, "file": "data/addgene_plasmids/136325.addgene-full.gb" }, @@ -103300,7 +130188,10 @@ "plasmid_name": "pCPP3373", "sequence-type": "addgene-full", "addgene_id": "128718", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128718.addgene-full.gb" }, @@ -103309,7 +130200,10 @@ "plasmid_name": "2HA-pDEST-N", "sequence-type": "addgene-full", "addgene_id": "118373", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118373.addgene-full.gb" }, @@ -103318,7 +130212,10 @@ "plasmid_name": "pHAGE-VLDLR", "sequence-type": "addgene-full", "addgene_id": "116802", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116802.addgene-full.gb" }, @@ -103327,7 +130224,10 @@ "plasmid_name": "pDONR221 NLRP1 delta787-843", "sequence-type": "addgene-full", "addgene_id": "166821", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166821.addgene-full.gb" }, @@ -103336,7 +130236,10 @@ "plasmid_name": "pHAGE-PIK3CA-C378Y", "sequence-type": "addgene-full", "addgene_id": "116456", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116456.addgene-full.gb" }, @@ -103345,7 +130248,10 @@ "plasmid_name": "pDONR221 Nsa2", "sequence-type": "depositor-full", "addgene_id": "63768", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63768.depositor-full.gb" }, @@ -103354,7 +130260,10 @@ "plasmid_name": "HS-H2B-RFP", "sequence-type": "addgene-full", "addgene_id": "105953", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2014.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25600237" + ], "kit": null, "file": "data/addgene_plasmids/105953.addgene-full.gb" }, @@ -103363,7 +130272,10 @@ "plasmid_name": "pH7m34GW-35S:SNACS", "sequence-type": "addgene-full", "addgene_id": "203576", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.56351", + "https://www.ncbi.nlm.nih.gov/pubmed/32463362" + ], "kit": null, "file": "data/addgene_plasmids/203576.addgene-full.gb" }, @@ -103372,7 +130284,10 @@ "plasmid_name": "pAG424GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14343", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -103384,7 +130299,10 @@ "plasmid_name": "pPB-cT3G-cERP2-TSC22D3", "sequence-type": "addgene-full", "addgene_id": "192916", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192916.addgene-full.gb" }, @@ -103393,7 +130311,6 @@ "plasmid_name": "pCM3.17", "sequence-type": "depositor-full", "addgene_id": "19607", - "references": [], "kit": null, "file": "data/addgene_plasmids/19607.depositor-full.gb" }, @@ -103402,7 +130319,10 @@ "plasmid_name": "pMXs-Six1", "sequence-type": "addgene-full", "addgene_id": "158532", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.55249", + "https://www.ncbi.nlm.nih.gov/pubmed/32602462" + ], "kit": null, "file": "data/addgene_plasmids/158532.addgene-full.gb" }, @@ -103411,7 +130331,10 @@ "plasmid_name": "pDL12", "sequence-type": "addgene-full", "addgene_id": "175899", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175899.addgene-full.gb" }, @@ -103420,7 +130343,10 @@ "plasmid_name": "pmCellFree_KA1_ZIKV NS4A", "sequence-type": "addgene-full", "addgene_id": "145346", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145346.addgene-full.gb" }, @@ -103429,7 +130355,10 @@ "plasmid_name": "C417-E02: attB4-polyhedrinp>His6-MBP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162933", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -103441,7 +130370,10 @@ "plasmid_name": "pGGDestSC+ATG", "sequence-type": "depositor-full", "addgene_id": "49323", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -103453,7 +130385,10 @@ "plasmid_name": "pHAGE-N'-FLAG-HA-NAP1S318A", "sequence-type": "addgene-full", "addgene_id": "195410", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.202303082", + "https://www.ncbi.nlm.nih.gov/pubmed/38059900" + ], "kit": null, "file": "data/addgene_plasmids/195410.addgene-full.gb" }, @@ -103462,7 +130397,10 @@ "plasmid_name": "pDONR223_MAP2K4_WT", "sequence-type": "addgene-full", "addgene_id": "82142", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82142.addgene-full.gb" }, @@ -103471,7 +130409,10 @@ "plasmid_name": "MAC_N_IRF9", "sequence-type": "addgene-full", "addgene_id": "187738", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187738.addgene-full.gb" }, @@ -103480,7 +130421,10 @@ "plasmid_name": "pDONR 223 VPS4B", "sequence-type": "addgene-full", "addgene_id": "169320", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.108493", + "https://www.ncbi.nlm.nih.gov/pubmed/33326793" + ], "kit": null, "file": "data/addgene_plasmids/169320.addgene-full.gb" }, @@ -103489,7 +130433,10 @@ "plasmid_name": "pDONR221_SLC41A1", "sequence-type": "addgene-full", "addgene_id": "132237", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132237.addgene-full.gb" }, @@ -103498,7 +130445,10 @@ "plasmid_name": "pJRA108", "sequence-type": "addgene-full", "addgene_id": "209341", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209341.addgene-full.gb" }, @@ -103507,7 +130457,10 @@ "plasmid_name": "pSGE_539_2xUAS_dCP", "sequence-type": "depositor-full", "addgene_id": "71168", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71168.depositor-full.gb" }, @@ -103516,7 +130469,10 @@ "plasmid_name": "pENTR-TARDBP-W385G", "sequence-type": "addgene-full", "addgene_id": "141326", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "file": "data/addgene_plasmids/141326.addgene-full.gb" }, @@ -103525,7 +130481,10 @@ "plasmid_name": "pDONR223_SERPINB4_p.E110K", "sequence-type": "addgene-full", "addgene_id": "81390", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -103537,7 +130496,10 @@ "plasmid_name": "pCFJ2210 - [1-2] ENTR - Fluor - mMaple3(1 intron, syntrons(3), no_start, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159864", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159864.addgene-full.gb" }, @@ -103546,7 +130508,10 @@ "plasmid_name": "pDONR221-SLC45A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161455", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161455.addgene-full.gb" }, @@ -103555,7 +130520,10 @@ "plasmid_name": "pDONR221-Ctdnep1_Cter", "sequence-type": "addgene-full", "addgene_id": "196522", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196522.addgene-full.gb" }, @@ -103564,7 +130532,10 @@ "plasmid_name": "p5Enrp1bE1", "sequence-type": "addgene-full", "addgene_id": "90111", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90111.addgene-full.gb" }, @@ -103573,7 +130544,10 @@ "plasmid_name": "pDONR223_TRAF2_WT", "sequence-type": "addgene-full", "addgene_id": "82239", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82239.addgene-full.gb" }, @@ -103582,7 +130556,10 @@ "plasmid_name": "pcDNA3.1 myc-NL-GW", "sequence-type": "addgene-full", "addgene_id": "113446", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113446.addgene-full.gb" }, @@ -103591,7 +130568,6 @@ "plasmid_name": "pcDNA-SUN1 mScarlet", "sequence-type": "addgene-full", "addgene_id": "187677", - "references": [], "kit": null, "file": "data/addgene_plasmids/187677.addgene-full.gb" }, @@ -103600,7 +130576,10 @@ "plasmid_name": "pINDUCER-21-LCOR-P2A-HOXA9-T2A-HOXA5-IMPROVED", "sequence-type": "addgene-full", "addgene_id": "154088", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "file": "data/addgene_plasmids/154088.addgene-full.gb" }, @@ -103609,7 +130588,10 @@ "plasmid_name": "PB-TA-ERP2-hcGAS(R255A)", "sequence-type": "addgene-full", "addgene_id": "208397", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06889-6", + "https://www.ncbi.nlm.nih.gov/pubmed/38200309" + ], "kit": null, "file": "data/addgene_plasmids/208397.addgene-full.gb" }, @@ -103618,7 +130600,10 @@ "plasmid_name": "tetO-SMAD6", "sequence-type": "addgene-full", "addgene_id": "170700", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170700.addgene-full.gb" }, @@ -103627,7 +130612,10 @@ "plasmid_name": "pFRT_TO_FlagHA_USP10", "sequence-type": "addgene-full", "addgene_id": "127102", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.12.024", + "https://www.ncbi.nlm.nih.gov/pubmed/31981475" + ], "kit": null, "file": "data/addgene_plasmids/127102.addgene-full.gb" }, @@ -103636,7 +130624,6 @@ "plasmid_name": "IDG_GRID1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161661", - "references": [], "kit": null, "file": "data/addgene_plasmids/161661.addgene-full.gb" }, @@ -103645,7 +130632,10 @@ "plasmid_name": "pGWB421", "sequence-type": "depositor-full", "addgene_id": "74815", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74815.depositor-full.gb" }, @@ -103654,7 +130644,10 @@ "plasmid_name": "pCDNA5_miniTurbo-C12orf49", "sequence-type": "addgene-full", "addgene_id": "155111", - "references": [], + "references": [ + "https://doi.org/10.1038/s42255-020-0211-z", + "https://www.ncbi.nlm.nih.gov/pubmed/32694731" + ], "kit": null, "file": "data/addgene_plasmids/155111.addgene-full.gb" }, @@ -103663,7 +130656,10 @@ "plasmid_name": "PE_15: Pxyl_lac_tet_bD", "sequence-type": "addgene-full", "addgene_id": "113592", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113592.addgene-full.gb" }, @@ -103672,7 +130668,10 @@ "plasmid_name": "MSCV-N EBNA3A", "sequence-type": "addgene-full", "addgene_id": "37956", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "file": "data/addgene_plasmids/37956.addgene-full.gb" }, @@ -103681,7 +130680,10 @@ "plasmid_name": "pDN0520 (pDEST, TRP1)", "sequence-type": "addgene-full", "addgene_id": "210481", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210481.addgene-full.gb" }, @@ -103690,7 +130692,10 @@ "plasmid_name": "pDONR223-KSR2", "sequence-type": "addgene-full", "addgene_id": "23501", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -103702,7 +130707,10 @@ "plasmid_name": "pSGE_886_Nhe2_EcR-to-ato_RB", "sequence-type": "addgene-full", "addgene_id": "71181", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71181.addgene-full.gb" }, @@ -103711,7 +130719,6 @@ "plasmid_name": "R777-E040 Hs.DUSP4-nostop", "sequence-type": "depositor-full", "addgene_id": "70324", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -103723,7 +130730,10 @@ "plasmid_name": "pDONR221_SLC35E1", "sequence-type": "addgene-full", "addgene_id": "132098", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132098.addgene-full.gb" }, @@ -103732,7 +130742,10 @@ "plasmid_name": "pHAGE-AKT1", "sequence-type": "addgene-full", "addgene_id": "116710", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116710.addgene-full.gb" }, @@ -103741,7 +130754,10 @@ "plasmid_name": "pLX307 P2A GFP Luciferase", "sequence-type": "addgene-full", "addgene_id": "193674", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193674.addgene-full.gb" }, @@ -103750,7 +130766,10 @@ "plasmid_name": "pYPQ293 (BhCas12b_v4)", "sequence-type": "addgene-full", "addgene_id": "136383", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136383.addgene-full.gb" }, @@ -103759,7 +130778,10 @@ "plasmid_name": "pQCXP CMV/TO DEST (w360-1)", "sequence-type": "depositor-full", "addgene_id": "17386", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17386.depositor-full.gb" }, @@ -103768,7 +130790,10 @@ "plasmid_name": "EGFP-Mm_Plk5(D168A)", "sequence-type": "addgene-full", "addgene_id": "136318", - "references": [], + "references": [ + "https://doi.org/10.1128/MCB.00607-10", + "https://www.ncbi.nlm.nih.gov/pubmed/21245385" + ], "kit": null, "file": "data/addgene_plasmids/136318.addgene-full.gb" }, @@ -103777,7 +130802,6 @@ "plasmid_name": "R777-E359 Hs.YAP1", "sequence-type": "depositor-full", "addgene_id": "70643", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -103789,7 +130813,6 @@ "plasmid_name": "dVGlut-Gal80", "sequence-type": "depositor-full", "addgene_id": "52555", - "references": [], "kit": null, "file": "data/addgene_plasmids/52555.depositor-full.gb" }, @@ -103798,7 +130821,10 @@ "plasmid_name": "pDONR221_SLC25A18", "sequence-type": "addgene-full", "addgene_id": "132003", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132003.addgene-full.gb" }, @@ -103807,7 +130833,9 @@ "plasmid_name": "pMpGWB206", "sequence-type": "depositor-full", "addgene_id": "68597", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68597.depositor-full.gb" }, @@ -103816,7 +130844,10 @@ "plasmid_name": "pENTR221-NR1H3", "sequence-type": "addgene-full", "addgene_id": "79514", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79514.addgene-full.gb" }, @@ -103825,7 +130856,10 @@ "plasmid_name": "pcDNA4/TO/GFP-GIGYF2", "sequence-type": "addgene-full", "addgene_id": "141189", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.03.006", + "https://www.ncbi.nlm.nih.gov/pubmed/30917308" + ], "kit": null, "file": "data/addgene_plasmids/141189.addgene-full.gb" }, @@ -103834,7 +130868,10 @@ "plasmid_name": "pCPP5107", "sequence-type": "addgene-full", "addgene_id": "128725", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128725.addgene-full.gb" }, @@ -103843,7 +130880,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP16", "sequence-type": "addgene-full", "addgene_id": "141269", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141269.addgene-full.gb" }, @@ -103852,7 +130892,10 @@ "plasmid_name": "pDONR223_ARAF_WT", "sequence-type": "addgene-full", "addgene_id": "82096", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -103864,7 +130907,10 @@ "plasmid_name": "pENTR-SLC66A5_STOP", "sequence-type": "addgene-full", "addgene_id": "221422", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221422.addgene-full.gb" }, @@ -103873,7 +130919,10 @@ "plasmid_name": "LA102: pMVP (L3-L2) P2A-eYFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121778", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121778.addgene-full.gb" }, @@ -103882,7 +130931,10 @@ "plasmid_name": "pDONR 221-XERICO (NON-STOP)", "sequence-type": "addgene-full", "addgene_id": "118684", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118684.addgene-full.gb" }, @@ -103891,7 +130943,10 @@ "plasmid_name": "pAG414GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14239", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -103903,7 +130958,10 @@ "plasmid_name": "TFORF3499", "sequence-type": "addgene-full", "addgene_id": "144975", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144975.addgene-full.gb" }, @@ -103912,7 +130970,9 @@ "plasmid_name": "pDONR221-MAGI2(v1)", "sequence-type": "addgene-full", "addgene_id": "166182", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166182.addgene-full.gb" }, @@ -103921,7 +130981,10 @@ "plasmid_name": "pHAGE-EGFR-E709G", "sequence-type": "addgene-full", "addgene_id": "116241", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116241.addgene-full.gb" }, @@ -103930,7 +130993,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp4", "sequence-type": "addgene-full", "addgene_id": "168913", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168913.addgene-full.gb" }, @@ -103939,7 +131005,10 @@ "plasmid_name": "TFORF3045", "sequence-type": "addgene-full", "addgene_id": "144521", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144521.addgene-full.gb" }, @@ -103948,7 +131017,10 @@ "plasmid_name": "CCNL1", "sequence-type": "addgene-full", "addgene_id": "155440", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155440.addgene-full.gb" }, @@ -103957,7 +131029,10 @@ "plasmid_name": "pTF101.1gw3", "sequence-type": "addgene-full", "addgene_id": "172181", - "references": [], + "references": [ + "https://doi.org/10.1007/s00299-005-0048-7", + "https://www.ncbi.nlm.nih.gov/pubmed/16249869" + ], "kit": null, "file": "data/addgene_plasmids/172181.addgene-full.gb" }, @@ -103966,7 +131041,10 @@ "plasmid_name": "pAM98", "sequence-type": "addgene-full", "addgene_id": "226690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226690.addgene-full.gb" }, @@ -103975,7 +131053,10 @@ "plasmid_name": "pDONR223_BRAF_p.G466E", "sequence-type": "addgene-full", "addgene_id": "81715", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -103987,7 +131068,10 @@ "plasmid_name": "pMLS253", "sequence-type": "addgene-full", "addgene_id": "114271", - "references": [], + "references": [ + "https://doi.org/10.17912/DDVH-BG64", + "https://www.ncbi.nlm.nih.gov/pubmed/32550388" + ], "kit": null, "file": "data/addgene_plasmids/114271.addgene-full.gb" }, @@ -103996,7 +131080,10 @@ "plasmid_name": "pENTR D-TOPO-C3_5", "sequence-type": "depositor-full", "addgene_id": "60254", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60254.depositor-full.gb" }, @@ -104005,7 +131092,10 @@ "plasmid_name": "pHMattR3-attR4-GFP", "sequence-type": "addgene-full", "addgene_id": "196247", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-023-04451-8", + "https://www.ncbi.nlm.nih.gov/pubmed/36646768" + ], "kit": null, "file": "data/addgene_plasmids/196247.addgene-full.gb" }, @@ -104014,7 +131104,6 @@ "plasmid_name": "R777-E348 Hs.TIAM1-nostop", "sequence-type": "addgene-full", "addgene_id": "70632", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -104026,7 +131115,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway mmu SE-Irf2bpl K", "sequence-type": "addgene-full", "addgene_id": "89380", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89380.addgene-full.gb" }, @@ -104035,7 +131127,10 @@ "plasmid_name": "pInducer10-UBC9-sh4", "sequence-type": "addgene-full", "addgene_id": "168988", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "file": "data/addgene_plasmids/168988.addgene-full.gb" }, @@ -104044,7 +131139,10 @@ "plasmid_name": "LOC5570884 Cardioacceleratory peptide receptor", "sequence-type": "addgene-full", "addgene_id": "115373", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115373.addgene-full.gb" }, @@ -104053,7 +131151,10 @@ "plasmid_name": "pEX-CMV-SP-YFP-STM1(24-685) EF hand 3 mut (A79K, N80D, D82G)", "sequence-type": "depositor-full", "addgene_id": "18865", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "file": "data/addgene_plasmids/18865.depositor-full.gb" }, @@ -104062,7 +131163,10 @@ "plasmid_name": "pDestattB_ubi:EGFP (pCM272)", "sequence-type": "depositor-full", "addgene_id": "68339", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.23989", + "https://www.ncbi.nlm.nih.gov/pubmed/23723152" + ], "kit": null, "file": "data/addgene_plasmids/68339.depositor-full.gb" }, @@ -104071,7 +131175,10 @@ "plasmid_name": "JL104: pMVP/Neo-DEST", "sequence-type": "addgene-full", "addgene_id": "121857", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121857.addgene-full.gb" }, @@ -104080,7 +131187,10 @@ "plasmid_name": "pDONR223_RAB31_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82993", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82993.addgene-full.gb" }, @@ -104089,7 +131199,10 @@ "plasmid_name": "pMLS538", "sequence-type": "addgene-full", "addgene_id": "188881", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "file": "data/addgene_plasmids/188881.addgene-full.gb" }, @@ -104098,7 +131211,10 @@ "plasmid_name": "MAC-BSG", "sequence-type": "addgene-full", "addgene_id": "158383", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158383.addgene-full.gb" }, @@ -104107,7 +131223,9 @@ "plasmid_name": "pMpGWB219", "sequence-type": "depositor-full", "addgene_id": "68610", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68610.depositor-full.gb" }, @@ -104116,7 +131234,10 @@ "plasmid_name": "GPR35_pLX307", "sequence-type": "addgene-full", "addgene_id": "98335", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98335.addgene-full.gb" }, @@ -104125,7 +131246,10 @@ "plasmid_name": "pMuLE ENTR CMV R4-R3", "sequence-type": "depositor-full", "addgene_id": "62093", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62093.depositor-full.gb" }, @@ -104134,7 +131258,10 @@ "plasmid_name": "pAG303GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14277", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -104146,7 +131273,10 @@ "plasmid_name": "pCZGY2849", "sequence-type": "depositor-full", "addgene_id": "74112", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21271", + "https://www.ncbi.nlm.nih.gov/pubmed/26861262" + ], "kit": null, "file": "data/addgene_plasmids/74112.depositor-full.gb" }, @@ -104155,7 +131285,10 @@ "plasmid_name": "pDONR223_RB1_p.E398L", "sequence-type": "addgene-full", "addgene_id": "82847", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82847.addgene-full.gb" }, @@ -104164,7 +131297,9 @@ "plasmid_name": "pGem-sHyper:sAPX", "sequence-type": "addgene-full", "addgene_id": "84738", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "file": "data/addgene_plasmids/84738.addgene-full.gb" }, @@ -104173,7 +131308,10 @@ "plasmid_name": "pSlick-Neo-KANK1", "sequence-type": "addgene-full", "addgene_id": "121983", - "references": [], + "references": [ + "https://doi.org/10.1038/srep46392", + "https://www.ncbi.nlm.nih.gov/pubmed/28436992" + ], "kit": null, "file": "data/addgene_plasmids/121983.addgene-full.gb" }, @@ -104182,7 +131320,10 @@ "plasmid_name": "p3E-SV40-puromycin", "sequence-type": "addgene-full", "addgene_id": "138358", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138358.addgene-full.gb" }, @@ -104191,7 +131332,10 @@ "plasmid_name": "pEBTet-SNAP-Centrobin", "sequence-type": "addgene-full", "addgene_id": "136829", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136829.addgene-full.gb" }, @@ -104200,7 +131344,10 @@ "plasmid_name": "actc1b-mKate2-rab38a", "sequence-type": "addgene-full", "addgene_id": "109631", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109631.addgene-full.gb" }, @@ -104209,7 +131356,10 @@ "plasmid_name": "TFORF3239", "sequence-type": "addgene-full", "addgene_id": "144715", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144715.addgene-full.gb" }, @@ -104218,7 +131368,10 @@ "plasmid_name": "pDONR221-SLC25A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161104", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161104.addgene-full.gb" }, @@ -104227,7 +131380,10 @@ "plasmid_name": "pDONR223_DOK1_p.P419S", "sequence-type": "addgene-full", "addgene_id": "82768", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82768.addgene-full.gb" }, @@ -104236,7 +131392,10 @@ "plasmid_name": "pDONR223_LNX1_p.V564I", "sequence-type": "addgene-full", "addgene_id": "81521", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -104248,7 +131407,10 @@ "plasmid_name": "pLV[Exp]-EF1A>Tet3G:IRES:Neo", "sequence-type": "addgene-full", "addgene_id": "198756", - "references": [], + "references": [ + "https://doi.org/10.1038/s41380-021-01117-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33972691" + ], "kit": null, "file": "data/addgene_plasmids/198756.addgene-full.gb" }, @@ -104257,7 +131419,9 @@ "plasmid_name": "pME-Lifeact-EGFP-3xHA (JDW 1322)", "sequence-type": "addgene-full", "addgene_id": "224494", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224494.addgene-full.gb" }, @@ -104266,7 +131430,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF7b", "sequence-type": "depositor-full", "addgene_id": "168883", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168883.depositor-full.gb" }, @@ -104275,7 +131442,6 @@ "plasmid_name": "pAM-35s-CBL4-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102396", - "references": [], "kit": null, "file": "data/addgene_plasmids/102396.addgene-full.gb" }, @@ -104284,7 +131450,10 @@ "plasmid_name": "V5-WT-short-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192088", - "references": [], + "references": [ + "https://doi.org/10.2337/db16-1023", + "https://www.ncbi.nlm.nih.gov/pubmed/28607106" + ], "kit": null, "file": "data/addgene_plasmids/192088.addgene-full.gb" }, @@ -104293,7 +131462,10 @@ "plasmid_name": "pT-Rex Dest30 dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134736", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "file": "data/addgene_plasmids/134736.addgene-full.gb" }, @@ -104302,7 +131474,10 @@ "plasmid_name": "pDest-1.7kbfabp6-eGFP-pA-CrymCherry", "sequence-type": "addgene-full", "addgene_id": "159088", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abg1371", + "https://www.ncbi.nlm.nih.gov/pubmed/34301599" + ], "kit": null, "file": "data/addgene_plasmids/159088.addgene-full.gb" }, @@ -104311,7 +131486,10 @@ "plasmid_name": "JH204: pMVP (R4-R3) human PDX1 open", "sequence-type": "addgene-full", "addgene_id": "121745", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121745.addgene-full.gb" }, @@ -104320,7 +131498,10 @@ "plasmid_name": "pDONR223_CCL2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82935", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82935.addgene-full.gb" }, @@ -104329,7 +131510,10 @@ "plasmid_name": "pMuLE ENTR U6 n.s shRNA L5-L2", "sequence-type": "depositor-full", "addgene_id": "62139", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62139.depositor-full.gb" }, @@ -104338,7 +131522,10 @@ "plasmid_name": "TFORF3472", "sequence-type": "addgene-full", "addgene_id": "144948", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144948.addgene-full.gb" }, @@ -104347,7 +131534,10 @@ "plasmid_name": "pCBLgRNA", "sequence-type": "addgene-full", "addgene_id": "199726", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad231", + "https://www.ncbi.nlm.nih.gov/pubmed/37070560" + ], "kit": null, "file": "data/addgene_plasmids/199726.addgene-full.gb" }, @@ -104356,7 +131546,10 @@ "plasmid_name": "A1-LCD-8F+4Y", "sequence-type": "addgene-full", "addgene_id": "178662", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178662.addgene-full.gb" }, @@ -104365,7 +131558,10 @@ "plasmid_name": "pDONR223_U2AF1_WT", "sequence-type": "addgene-full", "addgene_id": "81807", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -104377,7 +131573,10 @@ "plasmid_name": "pJF1106", "sequence-type": "depositor-full", "addgene_id": "8836", - "references": [], + "references": [ + "https://doi.org/10.1016/S0014-5793%2803%2900070-X", + "https://www.ncbi.nlm.nih.gov/pubmed/12606030" + ], "kit": null, "file": "data/addgene_plasmids/8836.depositor-full.gb" }, @@ -104386,7 +131585,10 @@ "plasmid_name": "pMOS028: Mitycam calcium sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163046", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163046.addgene-full.gb" }, @@ -104395,7 +131597,10 @@ "plasmid_name": "TFORF3111", "sequence-type": "addgene-full", "addgene_id": "144587", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144587.addgene-full.gb" }, @@ -104404,7 +131609,10 @@ "plasmid_name": "pAAV_GW_Dest", "sequence-type": "addgene-full", "addgene_id": "86955", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1918241117", + "https://www.ncbi.nlm.nih.gov/pubmed/32300008" + ], "kit": null, "file": "data/addgene_plasmids/86955.addgene-full.gb" }, @@ -104413,7 +131621,6 @@ "plasmid_name": "pLenti UBC LC3Flux (HaloTag7-mGFP-LC3-STOP)", "sequence-type": "addgene-full", "addgene_id": "215014", - "references": [], "kit": null, "file": "data/addgene_plasmids/215014.addgene-full.gb" }, @@ -104422,7 +131629,10 @@ "plasmid_name": "pHAGE-ALK-C990R", "sequence-type": "addgene-full", "addgene_id": "116107", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116107.addgene-full.gb" }, @@ -104431,7 +131641,10 @@ "plasmid_name": "pDONR221-FOXE1", "sequence-type": "depositor-full", "addgene_id": "101439", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101439.depositor-full.gb" }, @@ -104440,7 +131653,10 @@ "plasmid_name": "plenti-UBC- IRF4-3xHA-pGK-PUR", "sequence-type": "addgene-full", "addgene_id": "107386", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107386.addgene-full.gb" }, @@ -104449,7 +131665,10 @@ "plasmid_name": "Active Wnt11-V5", "sequence-type": "depositor-full", "addgene_id": "43824", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43824.depositor-full.gb" }, @@ -104458,7 +131677,10 @@ "plasmid_name": "TFORF3191", "sequence-type": "addgene-full", "addgene_id": "144667", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144667.addgene-full.gb" }, @@ -104467,7 +131689,10 @@ "plasmid_name": "pDONR221_FLVCR1", "sequence-type": "addgene-full", "addgene_id": "131892", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131892.addgene-full.gb" }, @@ -104476,7 +131701,10 @@ "plasmid_name": "pDONR223_AKT1_p.V201I", "sequence-type": "addgene-full", "addgene_id": "81453", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -104488,7 +131716,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1", "sequence-type": "addgene-full", "addgene_id": "221484", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221484.addgene-full.gb" }, @@ -104497,7 +131728,9 @@ "plasmid_name": "nTALE+CD_for TUB_8N_1397NC", "sequence-type": "addgene-full", "addgene_id": "193383", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.02.27.530312" + ], "kit": null, "file": "data/addgene_plasmids/193383.addgene-full.gb" }, @@ -104506,7 +131739,10 @@ "plasmid_name": "pDONR221-SLC15A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161076", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161076.addgene-full.gb" }, @@ -104515,7 +131751,10 @@ "plasmid_name": "TFORF2977", "sequence-type": "addgene-full", "addgene_id": "144453", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144453.addgene-full.gb" }, @@ -104524,7 +131763,10 @@ "plasmid_name": "p3E-RhoAa", "sequence-type": "addgene-full", "addgene_id": "109577", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109577.addgene-full.gb" }, @@ -104533,7 +131775,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-nsp12", "sequence-type": "addgene-full", "addgene_id": "168861", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168861.addgene-full.gb" }, @@ -104542,7 +131787,6 @@ "plasmid_name": "R777-E136 Hs.MRAS-nostop", "sequence-type": "depositor-full", "addgene_id": "70420", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -104554,7 +131798,10 @@ "plasmid_name": "pAG425GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14393", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -104566,7 +131813,10 @@ "plasmid_name": "5'-BirA-FLAG Sap30bp-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212092", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212092.addgene-full.gb" }, @@ -104575,7 +131825,10 @@ "plasmid_name": "pDONR SMARCB1 var 2", "sequence-type": "addgene-full", "addgene_id": "111181", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.44161", + "https://www.ncbi.nlm.nih.gov/pubmed/30860482" + ], "kit": null, "file": "data/addgene_plasmids/111181.addgene-full.gb" }, @@ -104584,7 +131837,10 @@ "plasmid_name": "pCWXPG-UBI-Ngn3PDX1MafA", "sequence-type": "addgene-full", "addgene_id": "114303", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "file": "data/addgene_plasmids/114303.addgene-full.gb" }, @@ -104593,7 +131849,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12C", "sequence-type": "addgene-full", "addgene_id": "81667", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -104605,7 +131864,6 @@ "plasmid_name": "pEF 3-GUS-2", "sequence-type": "depositor-full", "addgene_id": "20104", - "references": [], "kit": null, "file": "data/addgene_plasmids/20104.depositor-full.gb" }, @@ -104614,7 +131872,10 @@ "plasmid_name": "pDONR223_ERBB2IP_p.E463K", "sequence-type": "addgene-full", "addgene_id": "81587", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -104626,7 +131887,10 @@ "plasmid_name": "pGAN201", "sequence-type": "addgene-full", "addgene_id": "129204", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/29056345" + ], "kit": null, "file": "data/addgene_plasmids/129204.addgene-full.gb" }, @@ -104635,7 +131899,10 @@ "plasmid_name": "p5E-161K enhancer", "sequence-type": "addgene-full", "addgene_id": "138365", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138365.addgene-full.gb" }, @@ -104644,7 +131911,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep76", "sequence-type": "addgene-full", "addgene_id": "136814", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136814.addgene-full.gb" }, @@ -104653,7 +131923,10 @@ "plasmid_name": "pHvL1P4GA", "sequence-type": "addgene-full", "addgene_id": "112028", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-8944-7_14", + "https://www.ncbi.nlm.nih.gov/pubmed/30460568" + ], "kit": null, "file": "data/addgene_plasmids/112028.addgene-full.gb" }, @@ -104662,7 +131935,10 @@ "plasmid_name": "pAG415GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14409", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -104674,7 +131950,10 @@ "plasmid_name": "MiniCoopR U6:gRNA cdkn2a, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118842", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118842.addgene-full.gb" }, @@ -104683,7 +131962,10 @@ "plasmid_name": "pHAGE-ERBB2-G776V", "sequence-type": "addgene-full", "addgene_id": "116333", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116333.addgene-full.gb" }, @@ -104692,7 +131974,10 @@ "plasmid_name": "pcDNA3.2/2K-NS4B", "sequence-type": "addgene-full", "addgene_id": "120827", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120827.addgene-full.gb" }, @@ -104701,7 +131986,10 @@ "plasmid_name": "p3E-rab36", "sequence-type": "addgene-full", "addgene_id": "109697", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109697.addgene-full.gb" }, @@ -104710,7 +131998,10 @@ "plasmid_name": "pDONR221_SLC16A10", "sequence-type": "addgene-full", "addgene_id": "131946", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131946.addgene-full.gb" }, @@ -104719,7 +132010,10 @@ "plasmid_name": "pFL-V5-GW", "sequence-type": "depositor-full", "addgene_id": "78857", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "file": "data/addgene_plasmids/78857.depositor-full.gb" }, @@ -104728,7 +132022,6 @@ "plasmid_name": "Hs.KRAS4b A146V", "sequence-type": "depositor-full", "addgene_id": "83147", - "references": [], "kit": null, "file": "data/addgene_plasmids/83147.depositor-full.gb" }, @@ -104737,7 +132030,10 @@ "plasmid_name": "pDEST_6xUAS:mNeonGreen-Rab5a", "sequence-type": "addgene-full", "addgene_id": "192355", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.82094", + "https://www.ncbi.nlm.nih.gov/pubmed/36398880" + ], "kit": null, "file": "data/addgene_plasmids/192355.addgene-full.gb" }, @@ -104746,7 +132042,10 @@ "plasmid_name": "TFORF3252", "sequence-type": "addgene-full", "addgene_id": "144728", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144728.addgene-full.gb" }, @@ -104755,7 +132054,10 @@ "plasmid_name": "IG603: pMVP (L1-L4) TRE promoter", "sequence-type": "addgene-full", "addgene_id": "121691", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121691.addgene-full.gb" }, @@ -104764,7 +132066,10 @@ "plasmid_name": "pDONR223_ZNF597_p.L283V", "sequence-type": "addgene-full", "addgene_id": "82755", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82755.addgene-full.gb" }, @@ -104773,7 +132078,10 @@ "plasmid_name": "pDONR221-SLC17A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161139", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161139.addgene-full.gb" }, @@ -104782,7 +132090,10 @@ "plasmid_name": "MLKP1del4ec", "sequence-type": "addgene-full", "addgene_id": "130844", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130844.addgene-full.gb" }, @@ -104791,7 +132102,10 @@ "plasmid_name": "pKG-GW1-hCIT K42E", "sequence-type": "addgene-full", "addgene_id": "203168", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "file": "data/addgene_plasmids/203168.addgene-full.gb" }, @@ -104800,7 +132114,10 @@ "plasmid_name": "pRosa26-DEST", "sequence-type": "addgene-full", "addgene_id": "21189", - "references": [], + "references": [ + "https://doi.org/10.1186/1755-8417-1-3", + "https://www.ncbi.nlm.nih.gov/pubmed/19014667" + ], "kit": null, "file": "data/addgene_plasmids/21189.addgene-full.gb" }, @@ -104809,7 +132126,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND", "sequence-type": "addgene-full", "addgene_id": "169963", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169963.addgene-full.gb" }, @@ -104818,7 +132138,10 @@ "plasmid_name": "pSLIK TT 3xFLAG ID2 neo", "sequence-type": "addgene-full", "addgene_id": "98393", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98393.addgene-full.gb" }, @@ -104827,7 +132150,10 @@ "plasmid_name": "pAB-HDAC5(mut-H-Y)", "sequence-type": "addgene-full", "addgene_id": "114398", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114398.addgene-full.gb" }, @@ -104836,7 +132162,10 @@ "plasmid_name": "LIIIbeta R E-F", "sequence-type": "depositor-full", "addgene_id": "54394", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54394.depositor-full.gb" }, @@ -104845,7 +132174,10 @@ "plasmid_name": "pENT-L1-Kozak-GAP43-ECFP-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186356", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186356.addgene-full.gb" }, @@ -104854,7 +132186,10 @@ "plasmid_name": "pHAGE-WNK1__PRMT8", "sequence-type": "addgene-full", "addgene_id": "116845", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116845.addgene-full.gb" }, @@ -104863,7 +132198,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16 E7 Mutant 1", "sequence-type": "addgene-full", "addgene_id": "191545", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "file": "data/addgene_plasmids/191545.addgene-full.gb" }, @@ -104872,7 +132210,10 @@ "plasmid_name": "pDESTsmg", "sequence-type": "addgene-full", "addgene_id": "18878", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2007.08.015", + "https://www.ncbi.nlm.nih.gov/pubmed/17949993" + ], "kit": null, "file": "data/addgene_plasmids/18878.addgene-full.gb" }, @@ -104881,7 +132222,10 @@ "plasmid_name": "pDONR221_SLC2A11", "sequence-type": "addgene-full", "addgene_id": "132079", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132079.addgene-full.gb" }, @@ -104890,7 +132234,6 @@ "plasmid_name": "pBS L30 mRuby3-Rab27A", "sequence-type": "addgene-full", "addgene_id": "166432", - "references": [], "kit": null, "file": "data/addgene_plasmids/166432.addgene-full.gb" }, @@ -104899,7 +132242,10 @@ "plasmid_name": "pDEST-CMV GFP-GABARAPL1 G116A", "sequence-type": "addgene-full", "addgene_id": "123118", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123118.addgene-full.gb" }, @@ -104908,7 +132254,10 @@ "plasmid_name": "pDONR207-Citrine-NLS", "sequence-type": "depositor-full", "addgene_id": "44586", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "file": "data/addgene_plasmids/44586.depositor-full.gb" }, @@ -104917,7 +132266,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term LMNA", "sequence-type": "addgene-full", "addgene_id": "187576", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187576.addgene-full.gb" }, @@ -104926,7 +132278,10 @@ "plasmid_name": "pINDUCER20-Flag-NLS-hSPDEF delta3", "sequence-type": "addgene-full", "addgene_id": "100876", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2017.03.048", + "https://www.ncbi.nlm.nih.gov/pubmed/28390865" + ], "kit": null, "file": "data/addgene_plasmids/100876.addgene-full.gb" }, @@ -104935,7 +132290,10 @@ "plasmid_name": "pLenti-PGK-KRAS4B(G12V)", "sequence-type": "addgene-full", "addgene_id": "35633", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2011.12.033", + "https://www.ncbi.nlm.nih.gov/pubmed/22341439" + ], "kit": null, "file": "data/addgene_plasmids/35633.addgene-full.gb" }, @@ -104944,7 +132302,10 @@ "plasmid_name": "pLenti-Zyxin-D (aa160-340)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187696", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187696.addgene-full.gb" }, @@ -104953,7 +132314,6 @@ "plasmid_name": "IDG_KCNA7_OE_1", "sequence-type": "addgene-full", "addgene_id": "161680", - "references": [], "kit": null, "file": "data/addgene_plasmids/161680.addgene-full.gb" }, @@ -104962,7 +132322,10 @@ "plasmid_name": "mTALEAD 16S rRNA-2", "sequence-type": "addgene-full", "addgene_id": "210834", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "file": "data/addgene_plasmids/210834.addgene-full.gb" }, @@ -104971,7 +132334,10 @@ "plasmid_name": "pHAGE-IDH1-R132L", "sequence-type": "addgene-full", "addgene_id": "116411", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116411.addgene-full.gb" }, @@ -104980,7 +132346,10 @@ "plasmid_name": "MSCV Puro SCRIB WT", "sequence-type": "addgene-full", "addgene_id": "88886", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3413", + "https://www.ncbi.nlm.nih.gov/pubmed/27694890" + ], "kit": null, "file": "data/addgene_plasmids/88886.addgene-full.gb" }, @@ -104989,7 +132358,10 @@ "plasmid_name": "pDONR221-SLC24A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161144", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161144.depositor-full.gb" }, @@ -104998,7 +132370,10 @@ "plasmid_name": "pDONR221-MAGT1", "sequence-type": "addgene-full", "addgene_id": "132302", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132302.addgene-full.gb" }, @@ -105007,7 +132382,6 @@ "plasmid_name": "pENTR-Cre", "sequence-type": "addgene-full", "addgene_id": "139545", - "references": [], "kit": null, "file": "data/addgene_plasmids/139545.addgene-full.gb" }, @@ -105016,7 +132390,10 @@ "plasmid_name": "pGWB701NL3F10H", "sequence-type": "addgene-full", "addgene_id": "141288", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0454-4", + "https://www.ncbi.nlm.nih.gov/pubmed/31316580" + ], "kit": null, "file": "data/addgene_plasmids/141288.addgene-full.gb" }, @@ -105025,7 +132402,10 @@ "plasmid_name": "pDEST40-2XFL-Src-S32-KD", "sequence-type": "addgene-full", "addgene_id": "140311", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140311.addgene-full.gb" }, @@ -105034,7 +132414,9 @@ "plasmid_name": "pMpGWB310", "sequence-type": "depositor-full", "addgene_id": "68638", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68638.depositor-full.gb" }, @@ -105043,7 +132425,10 @@ "plasmid_name": "pDONR223_KEAP1_WT", "sequence-type": "addgene-full", "addgene_id": "82077", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82077.addgene-full.gb" }, @@ -105052,7 +132437,10 @@ "plasmid_name": "Puro-iNotch1IC", "sequence-type": "depositor-full", "addgene_id": "75338", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2016.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/27133796" + ], "kit": null, "file": "data/addgene_plasmids/75338.depositor-full.gb" }, @@ -105061,7 +132449,6 @@ "plasmid_name": "p667-UBC-TLK2-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135250", - "references": [], "kit": null, "file": "data/addgene_plasmids/135250.addgene-full.gb" }, @@ -105070,7 +132457,10 @@ "plasmid_name": "PB-Neo-TetO-Cdk12_Untagged", "sequence-type": "addgene-full", "addgene_id": "127178", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0758-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30487607" + ], "kit": null, "file": "data/addgene_plasmids/127178.addgene-full.gb" }, @@ -105079,7 +132469,10 @@ "plasmid_name": "612 p3E-2A-mCherryCAAXpA", "sequence-type": "addgene-full", "addgene_id": "195971", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195971.addgene-full.gb" }, @@ -105088,7 +132481,6 @@ "plasmid_name": "pAG426-GAL-ATXN1-Q85", "sequence-type": "addgene-full", "addgene_id": "181712", - "references": [], "kit": null, "file": "data/addgene_plasmids/181712.addgene-full.gb" }, @@ -105097,7 +132489,10 @@ "plasmid_name": "pMuLE_ENTR_CBF-GLuc_L3-L2", "sequence-type": "addgene-full", "addgene_id": "113868", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "file": "data/addgene_plasmids/113868.addgene-full.gb" }, @@ -105106,7 +132501,10 @@ "plasmid_name": "pEN_TT 3xFLAG-MAVS-Ala148,Ala271", "sequence-type": "addgene-full", "addgene_id": "158633", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158633.addgene-full.gb" }, @@ -105115,7 +132513,6 @@ "plasmid_name": "PTPN11 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216604", - "references": [], "kit": null, "file": "data/addgene_plasmids/216604.addgene-full.gb" }, @@ -105124,7 +132521,6 @@ "plasmid_name": "p42Neo 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58550", - "references": [], "kit": null, "file": "data/addgene_plasmids/58550.depositor-full.gb" }, @@ -105133,7 +132529,10 @@ "plasmid_name": "pRC063", "sequence-type": "addgene-full", "addgene_id": "123057", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123057.addgene-full.gb" }, @@ -105142,7 +132541,10 @@ "plasmid_name": "pDONR221_SLC30A8", "sequence-type": "addgene-full", "addgene_id": "132136", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132136.addgene-full.gb" }, @@ -105151,7 +132553,10 @@ "plasmid_name": "pKH161_FLAG-APEX2-YIPF3 WT", "sequence-type": "addgene-full", "addgene_id": "214980", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "file": "data/addgene_plasmids/214980.addgene-full.gb" }, @@ -105160,7 +132565,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-mir-230", "sequence-type": "depositor-full", "addgene_id": "46741", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46741.depositor-full.gb" }, @@ -105169,7 +132577,10 @@ "plasmid_name": "pNBU2_erm_P1T_DP-GH023 - NanoLuc", "sequence-type": "addgene-full", "addgene_id": "117727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2017.03.045", + "https://www.ncbi.nlm.nih.gov/pubmed/28431252" + ], "kit": null, "file": "data/addgene_plasmids/117727.addgene-full.gb" }, @@ -105178,7 +132589,10 @@ "plasmid_name": "pENTR5'-attP (pCM254)", "sequence-type": "depositor-full", "addgene_id": "68311", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.23989", + "https://www.ncbi.nlm.nih.gov/pubmed/23723152" + ], "kit": null, "file": "data/addgene_plasmids/68311.depositor-full.gb" }, @@ -105187,7 +132601,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0427-luc2", "sequence-type": "addgene-full", "addgene_id": "214634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214634.addgene-full.gb" }, @@ -105196,7 +132613,10 @@ "plasmid_name": "pDONR223_BCL10_WT", "sequence-type": "addgene-full", "addgene_id": "82243", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82243.addgene-full.gb" }, @@ -105205,7 +132625,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L5L2", "sequence-type": "depositor-full", "addgene_id": "113738", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -105217,7 +132640,6 @@ "plasmid_name": "sgRNA(MS2)_zeo insert c-MYC", "sequence-type": "addgene-full", "addgene_id": "164636", - "references": [], "kit": null, "file": "data/addgene_plasmids/164636.addgene-full.gb" }, @@ -105226,7 +132648,10 @@ "plasmid_name": "pAG306GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14211", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -105238,7 +132663,10 @@ "plasmid_name": "C513-E07: attB5r--attB1r", "sequence-type": "addgene-full", "addgene_id": "162949", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -105250,7 +132678,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-GFP", "sequence-type": "addgene-full", "addgene_id": "175757", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175757.addgene-full.gb" }, @@ -105259,7 +132690,10 @@ "plasmid_name": "pDONR223-NEK5", "sequence-type": "addgene-full", "addgene_id": "23434", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -105271,7 +132705,10 @@ "plasmid_name": "pHAGE-PTEN-L247Sfs*6", "sequence-type": "addgene-full", "addgene_id": "116625", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116625.addgene-full.gb" }, @@ -105280,7 +132717,6 @@ "plasmid_name": "pEF 1-PLE-4", "sequence-type": "depositor-full", "addgene_id": "20086", - "references": [], "kit": null, "file": "data/addgene_plasmids/20086.depositor-full.gb" }, @@ -105289,7 +132725,10 @@ "plasmid_name": "pUC-DEST-hPROX1-tdTomato-PuroTK", "sequence-type": "addgene-full", "addgene_id": "141027", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141027.addgene-full.gb" }, @@ -105298,7 +132737,9 @@ "plasmid_name": "pMpGWB411", "sequence-type": "depositor-full", "addgene_id": "68676", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68676.depositor-full.gb" }, @@ -105307,7 +132748,10 @@ "plasmid_name": "pDONR223-RPS6KA1", "sequence-type": "addgene-full", "addgene_id": "23860", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -105319,7 +132763,10 @@ "plasmid_name": "pENTR-R4R3-2xmEGFP-N", "sequence-type": "addgene-full", "addgene_id": "113747", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -105331,7 +132778,9 @@ "plasmid_name": "pDONR201-JIP60ml", "sequence-type": "addgene-full", "addgene_id": "104959", - "references": [], + "references": [ + "https://doi.org/10.6084/m9.figshare.5625607" + ], "kit": null, "file": "data/addgene_plasmids/104959.addgene-full.gb" }, @@ -105340,7 +132789,10 @@ "plasmid_name": "pDONR223_FBXO16_p.T50K", "sequence-type": "addgene-full", "addgene_id": "81371", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -105352,7 +132804,10 @@ "plasmid_name": "MAC_N_SOX5", "sequence-type": "addgene-full", "addgene_id": "187742", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187742.addgene-full.gb" }, @@ -105361,7 +132816,10 @@ "plasmid_name": "pDONR223_JUN_WT", "sequence-type": "addgene-full", "addgene_id": "82138", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82138.addgene-full.gb" }, @@ -105370,7 +132828,10 @@ "plasmid_name": "pCFJ2366 - intron GG3 - 250bp no PATC", "sequence-type": "addgene-full", "addgene_id": "159885", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159885.addgene-full.gb" }, @@ -105379,7 +132840,10 @@ "plasmid_name": "pDONR221_SLC26A5", "sequence-type": "addgene-full", "addgene_id": "132044", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132044.addgene-full.gb" }, @@ -105388,7 +132852,6 @@ "plasmid_name": "pDONR221-nrip1a", "sequence-type": "addgene-full", "addgene_id": "192731", - "references": [], "kit": null, "file": "data/addgene_plasmids/192731.addgene-full.gb" }, @@ -105397,7 +132860,10 @@ "plasmid_name": "pENTR.hU6hH1", "sequence-type": "depositor-full", "addgene_id": "32686", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "file": "data/addgene_plasmids/32686.depositor-full.gb" }, @@ -105406,7 +132872,10 @@ "plasmid_name": "pAG415GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14146", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -105418,7 +132887,10 @@ "plasmid_name": "pCM3.29", "sequence-type": "depositor-full", "addgene_id": "19402", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19402.depositor-full.gb" }, @@ -105427,7 +132899,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-KIAA1967", "sequence-type": "addgene-full", "addgene_id": "38082", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38082.addgene-full.gb" }, @@ -105436,7 +132911,10 @@ "plasmid_name": "pENTR hH1-TERRA", "sequence-type": "depositor-full", "addgene_id": "111381", - "references": [], + "references": [ + "https://doi.org/10.3390/genes7080046", + "https://www.ncbi.nlm.nih.gov/pubmed/27537914" + ], "kit": null, "file": "data/addgene_plasmids/111381.depositor-full.gb" }, @@ -105445,7 +132923,10 @@ "plasmid_name": "pRU325", "sequence-type": "addgene-full", "addgene_id": "167676", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167676.addgene-full.gb" }, @@ -105454,7 +132935,10 @@ "plasmid_name": "pDONR223_REG1B_p.C64W", "sequence-type": "addgene-full", "addgene_id": "81298", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -105466,7 +132950,10 @@ "plasmid_name": "pCM5.31", "sequence-type": "depositor-full", "addgene_id": "19398", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19398.depositor-full.gb" }, @@ -105475,7 +132962,10 @@ "plasmid_name": "pCAG/ATP11A(E186Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209249", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209249.addgene-full.gb" }, @@ -105484,7 +132974,10 @@ "plasmid_name": "pCFJ1415", "sequence-type": "depositor-full", "addgene_id": "84828", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.072", + "https://www.ncbi.nlm.nih.gov/pubmed/27374334" + ], "kit": null, "file": "data/addgene_plasmids/84828.depositor-full.gb" }, @@ -105493,7 +132986,10 @@ "plasmid_name": "pDONR223-FLT1", "sequence-type": "addgene-full", "addgene_id": "23912", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -105505,7 +133001,6 @@ "plasmid_name": "IDG_HTR3D_OE_1", "sequence-type": "addgene-full", "addgene_id": "161626", - "references": [], "kit": null, "file": "data/addgene_plasmids/161626.addgene-full.gb" }, @@ -105514,7 +133009,6 @@ "plasmid_name": "R777-E124 Hs.MAP2K2-nostop", "sequence-type": "depositor-full", "addgene_id": "70408", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -105526,7 +133020,10 @@ "plasmid_name": "240 pTol2005b", "sequence-type": "depositor-full", "addgene_id": "73483", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/73483.depositor-full.gb" }, @@ -105535,7 +133032,9 @@ "plasmid_name": "pFLIP35", "sequence-type": "depositor-full", "addgene_id": "65502", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65502.depositor-full.gb" }, @@ -105544,7 +133043,6 @@ "plasmid_name": "R777-E108 Hs.INSRR-nostop", "sequence-type": "depositor-full", "addgene_id": "70392", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -105556,7 +133054,10 @@ "plasmid_name": "pHAGE-MAP2K1", "sequence-type": "addgene-full", "addgene_id": "116757", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116757.addgene-full.gb" }, @@ -105565,7 +133066,10 @@ "plasmid_name": "pExp_TRE:TAL21", "sequence-type": "depositor-full", "addgene_id": "51795", - "references": [], + "references": [ + "https://doi.org/10.1021/sb500263b", + "https://www.ncbi.nlm.nih.gov/pubmed/25369267" + ], "kit": null, "file": "data/addgene_plasmids/51795.depositor-full.gb" }, @@ -105574,7 +133078,10 @@ "plasmid_name": "tetO-IRX5", "sequence-type": "addgene-full", "addgene_id": "170693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170693.addgene-full.gb" }, @@ -105583,7 +133090,10 @@ "plasmid_name": "pSEM236 - pEXP[Pmlc-2 | histamine | rpl-3 UTR]", "sequence-type": "addgene-full", "addgene_id": "159797", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000349", + "https://www.ncbi.nlm.nih.gov/pubmed/33437931" + ], "kit": null, "file": "data/addgene_plasmids/159797.addgene-full.gb" }, @@ -105592,7 +133102,10 @@ "plasmid_name": "pYPQ140", "sequence-type": "addgene-full", "addgene_id": "99895", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2017.11.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29197638" + ], "kit": null, "file": "data/addgene_plasmids/99895.addgene-full.gb" }, @@ -105601,7 +133114,10 @@ "plasmid_name": "pHAGE-PIK3CD-A835T", "sequence-type": "addgene-full", "addgene_id": "116563", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116563.addgene-full.gb" }, @@ -105610,7 +133126,10 @@ "plasmid_name": "pDONR223_LAGE3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83007", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83007.addgene-full.gb" }, @@ -105619,7 +133138,10 @@ "plasmid_name": "pYPQ141D-peg", "sequence-type": "addgene-full", "addgene_id": "141081", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2020.03.010", + "https://www.ncbi.nlm.nih.gov/pubmed/32222487" + ], "kit": null, "file": "data/addgene_plasmids/141081.addgene-full.gb" }, @@ -105628,7 +133150,10 @@ "plasmid_name": "pYPQ165", "sequence-type": "addgene-full", "addgene_id": "109327", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12982", + "https://www.ncbi.nlm.nih.gov/pubmed/29972722" + ], "kit": null, "file": "data/addgene_plasmids/109327.addgene-full.gb" }, @@ -105637,7 +133162,10 @@ "plasmid_name": "p35S::AtSOBIR1-YFPn", "sequence-type": "addgene-full", "addgene_id": "86165", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "file": "data/addgene_plasmids/86165.addgene-full.gb" }, @@ -105646,7 +133174,10 @@ "plasmid_name": "pT2-cryR;yrkCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90156", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90156.addgene-full.gb" }, @@ -105655,7 +133186,10 @@ "plasmid_name": "pDONR221-SLC9A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161412", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161412.addgene-full.gb" }, @@ -105664,7 +133198,10 @@ "plasmid_name": "C453-E09: attB4-Grp78p>-attB5", "sequence-type": "addgene-full", "addgene_id": "162974", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -105676,7 +133213,10 @@ "plasmid_name": "pUAS-Myc-BirA-G3-ER", "sequence-type": "addgene-full", "addgene_id": "173815", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22599-x", + "https://www.ncbi.nlm.nih.gov/pubmed/33888706" + ], "kit": null, "file": "data/addgene_plasmids/173815.addgene-full.gb" }, @@ -105685,7 +133225,10 @@ "plasmid_name": "pENTR223-BMRF2", "sequence-type": "addgene-full", "addgene_id": "195803", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195803.addgene-full.gb" }, @@ -105694,7 +133237,6 @@ "plasmid_name": "pcDNA3.1-ccdB-Nanoluc", "sequence-type": "addgene-full", "addgene_id": "87067", - "references": [], "kit": null, "file": "data/addgene_plasmids/87067.addgene-full.gb" }, @@ -105704,8 +133246,8 @@ "sequence-type": "addgene-full", "addgene_id": "22590", "references": [ - "https://doi.org/10.1016/j.celrep.2016.09.079", - "https://www.ncbi.nlm.nih.gov/pubmed/27760321" + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" ], "kit": null, "file": "data/addgene_plasmids/22590.addgene-full.gb" @@ -105715,7 +133257,10 @@ "plasmid_name": "pHAGE-PTEN-C136R", "sequence-type": "addgene-full", "addgene_id": "116618", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116618.addgene-full.gb" }, @@ -105724,7 +133269,10 @@ "plasmid_name": "pMuLE ENTR U6 L1-R5", "sequence-type": "depositor-full", "addgene_id": "62111", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62111.depositor-full.gb" }, @@ -105733,7 +133281,10 @@ "plasmid_name": "pDONR221_SLC43A2", "sequence-type": "addgene-full", "addgene_id": "132190", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132190.addgene-full.gb" }, @@ -105742,7 +133293,6 @@ "plasmid_name": "R777-E162 Hs.PEBP1-nostop", "sequence-type": "depositor-full", "addgene_id": "70446", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -105754,7 +133304,10 @@ "plasmid_name": "pLX302", "sequence-type": "addgene-full", "addgene_id": "25896", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "file": "data/addgene_plasmids/25896.addgene-full.gb" }, @@ -105763,7 +133316,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) IGF1R", "sequence-type": "addgene-full", "addgene_id": "107499", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107499.addgene-full.gb" }, @@ -105772,7 +133328,10 @@ "plasmid_name": "pDONR221-LETM2", "sequence-type": "addgene-full", "addgene_id": "132270", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132270.addgene-full.gb" }, @@ -105781,7 +133340,6 @@ "plasmid_name": "EBP50-pDONR221", "sequence-type": "addgene-full", "addgene_id": "124243", - "references": [], "kit": null, "file": "data/addgene_plasmids/124243.addgene-full.gb" }, @@ -105790,7 +133348,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-STK32A_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170608", - "references": [], "kit": null, "file": "data/addgene_plasmids/170608.addgene-full.gb" }, @@ -105799,7 +133356,10 @@ "plasmid_name": "pCR8/GW/TOPO-ETV1", "sequence-type": "addgene-full", "addgene_id": "98623", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98623.addgene-full.gb" }, @@ -105808,7 +133368,10 @@ "plasmid_name": "pDONR223_CTCF_p.R377H", "sequence-type": "addgene-full", "addgene_id": "81566", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -105820,7 +133383,10 @@ "plasmid_name": "pclbw-opa1(isoform 7DeltaS1)-myc", "sequence-type": "addgene-full", "addgene_id": "62846", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/24703695" + ], "kit": null, "file": "data/addgene_plasmids/62846.addgene-full.gb" }, @@ -105829,7 +133395,10 @@ "plasmid_name": "pDONR221-SLC22A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161143", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161143.addgene-full.gb" }, @@ -105838,7 +133407,10 @@ "plasmid_name": "pDONR-IAA5_no stop", "sequence-type": "depositor-full", "addgene_id": "83868", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83868.depositor-full.gb" }, @@ -105847,7 +133419,10 @@ "plasmid_name": "R619-M64-303: CMV51p> SARS-CoV-2 S(1-1208)-2P-T4f-3C-His8-Strep2x2 D614G", "sequence-type": "addgene-full", "addgene_id": "166011", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/166011.addgene-full.gb" }, @@ -105856,7 +133431,10 @@ "plasmid_name": "TFORF3276", "sequence-type": "addgene-full", "addgene_id": "144752", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144752.addgene-full.gb" }, @@ -105865,7 +133443,10 @@ "plasmid_name": "p3E-rab1bb", "sequence-type": "addgene-full", "addgene_id": "109676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109676.addgene-full.gb" }, @@ -105874,7 +133455,10 @@ "plasmid_name": "actc1b-mKate2-rab11ba", "sequence-type": "addgene-full", "addgene_id": "109596", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109596.addgene-full.gb" }, @@ -105883,7 +133467,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-Membrane", "sequence-type": "addgene-full", "addgene_id": "168880", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168880.addgene-full.gb" }, @@ -105892,7 +133479,10 @@ "plasmid_name": "pDONR221-Bms1", "sequence-type": "addgene-full", "addgene_id": "100001", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/100001.addgene-full.gb" }, @@ -105901,7 +133491,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp2", "sequence-type": "depositor-full", "addgene_id": "168835", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168835.depositor-full.gb" }, @@ -105910,7 +133503,10 @@ "plasmid_name": "5'-3xFLAG Sap30bp+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212073", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212073.addgene-full.gb" }, @@ -105919,7 +133515,10 @@ "plasmid_name": "pDONR223_IDH1_p.R132H", "sequence-type": "addgene-full", "addgene_id": "81686", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -105931,7 +133530,10 @@ "plasmid_name": "pDONR221-SLC36A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161238", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161238.addgene-full.gb" }, @@ -105940,7 +133542,6 @@ "plasmid_name": "R777-E288 Hs.ROS1-nostop", "sequence-type": "depositor-full", "addgene_id": "70572", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -105952,7 +133553,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM", "sequence-type": "addgene-full", "addgene_id": "169982", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169982.addgene-full.gb" }, @@ -105961,7 +133565,10 @@ "plasmid_name": "TFORF2953", "sequence-type": "addgene-full", "addgene_id": "144429", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144429.addgene-full.gb" }, @@ -105970,7 +133577,6 @@ "plasmid_name": "pCENTR_DMC1p_amiRNA", "sequence-type": "addgene-full", "addgene_id": "225985", - "references": [], "kit": null, "file": "data/addgene_plasmids/225985.addgene-full.gb" }, @@ -105979,7 +133585,9 @@ "plasmid_name": "pEF-IRES-puro6 +gal4DBDHIFCAD pGalO linker", "sequence-type": "addgene-full", "addgene_id": "207172", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207172.addgene-full.gb" }, @@ -105988,7 +133596,10 @@ "plasmid_name": "pHAGE-ERBB2-S310F", "sequence-type": "addgene-full", "addgene_id": "116349", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116349.addgene-full.gb" }, @@ -105997,7 +133608,6 @@ "plasmid_name": "pENTRY4_ Rac4", "sequence-type": "addgene-full", "addgene_id": "126896", - "references": [], "kit": null, "file": "data/addgene_plasmids/126896.addgene-full.gb" }, @@ -106006,7 +133616,10 @@ "plasmid_name": "pDONR223_KRAS_p.G13V", "sequence-type": "addgene-full", "addgene_id": "82800", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82800.addgene-full.gb" }, @@ -106015,7 +133628,10 @@ "plasmid_name": "pattB-RfB2", "sequence-type": "depositor-full", "addgene_id": "62296", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.115.016808", + "https://www.ncbi.nlm.nih.gov/pubmed/25869647" + ], "kit": null, "file": "data/addgene_plasmids/62296.depositor-full.gb" }, @@ -106024,7 +133640,10 @@ "plasmid_name": "pLX304-PCDH7-c", "sequence-type": "addgene-full", "addgene_id": "108540", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-1267-T", + "https://www.ncbi.nlm.nih.gov/pubmed/27821484" + ], "kit": null, "file": "data/addgene_plasmids/108540.addgene-full.gb" }, @@ -106033,7 +133652,10 @@ "plasmid_name": "p{3P3-dsRed::KD,attB}", "sequence-type": "addgene-full", "addgene_id": "182178", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182178.addgene-full.gb" }, @@ -106042,7 +133664,10 @@ "plasmid_name": "A1-LCD-20G+20S", "sequence-type": "addgene-full", "addgene_id": "178683", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178683.addgene-full.gb" }, @@ -106051,7 +133676,9 @@ "plasmid_name": "pPB-cT3G-cERP2-MSX1", "sequence-type": "addgene-full", "addgene_id": "222557", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222557.addgene-full.gb" }, @@ -106060,7 +133687,10 @@ "plasmid_name": "pDONR223_JMJD5_p.A230T", "sequence-type": "addgene-full", "addgene_id": "81429", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -106072,7 +133702,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_S", "sequence-type": "addgene-full", "addgene_id": "169402", - "references": [], "kit": null, "file": "data/addgene_plasmids/169402.addgene-full.gb" }, @@ -106081,7 +133710,10 @@ "plasmid_name": "KO502: pMVP (L3-L2) HA tag + pA; RIP::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121810", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121810.addgene-full.gb" }, @@ -106090,7 +133722,6 @@ "plasmid_name": "pAd/CMV/DAX1-IRES-nEGFP", "sequence-type": "addgene-full", "addgene_id": "29752", - "references": [], "kit": null, "file": "data/addgene_plasmids/29752.addgene-full.gb" }, @@ -106099,7 +133730,10 @@ "plasmid_name": "tetO-ASCL1-LMX1b-NURR1-PuroR", "sequence-type": "addgene-full", "addgene_id": "182298", - "references": [], + "references": [ + "https://doi.org/10.1038/s41380-021-01273-0", + "https://www.ncbi.nlm.nih.gov/pubmed/34493831" + ], "kit": null, "file": "data/addgene_plasmids/182298.addgene-full.gb" }, @@ -106108,7 +133742,10 @@ "plasmid_name": "TFORF3456", "sequence-type": "addgene-full", "addgene_id": "144932", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144932.addgene-full.gb" }, @@ -106117,7 +133754,10 @@ "plasmid_name": "PRPF8", "sequence-type": "addgene-full", "addgene_id": "155853", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155853.addgene-full.gb" }, @@ -106126,7 +133766,10 @@ "plasmid_name": "pHAGE-BRAF-V600K", "sequence-type": "addgene-full", "addgene_id": "116206", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116206.addgene-full.gb" }, @@ -106135,7 +133778,10 @@ "plasmid_name": "pDONR221_SLC12A7", "sequence-type": "addgene-full", "addgene_id": "131873", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131873.addgene-full.gb" }, @@ -106144,7 +133790,10 @@ "plasmid_name": "TFORF3210", "sequence-type": "addgene-full", "addgene_id": "144686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144686.addgene-full.gb" }, @@ -106153,7 +133802,10 @@ "plasmid_name": "pLX302_CdTag-HA_EmptyVector", "sequence-type": "addgene-full", "addgene_id": "221465", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221465.addgene-full.gb" }, @@ -106162,7 +133814,10 @@ "plasmid_name": "pJOG562", "sequence-type": "depositor-full", "addgene_id": "105340", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0197185", + "https://www.ncbi.nlm.nih.gov/pubmed/29847550" + ], "kit": { "name": "MoClo Plant Parts II and Infrastructure Kit", "url": "https://www.addgene.org/1000000135/" @@ -106174,7 +133829,10 @@ "plasmid_name": "pDONR221-SLC10A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161097", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161097.addgene-full.gb" }, @@ -106183,7 +133841,9 @@ "plasmid_name": "pME TAEL2.0-5xC120-minpro (JDW 1109)", "sequence-type": "addgene-full", "addgene_id": "224507", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224507.addgene-full.gb" }, @@ -106192,7 +133852,10 @@ "plasmid_name": "pDONR221-SLC9A9_STOP", "sequence-type": "addgene-full", "addgene_id": "161377", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161377.addgene-full.gb" }, @@ -106213,7 +133876,10 @@ "plasmid_name": "TFORF3090", "sequence-type": "addgene-full", "addgene_id": "144566", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144566.addgene-full.gb" }, @@ -106222,7 +133888,10 @@ "plasmid_name": "pDONR221-SLC46A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161369", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161369.depositor-full.gb" }, @@ -106231,7 +133900,9 @@ "plasmid_name": "AAV-TRE-dSaCas9-NLS-3xHA-3xSunTag_bGHpA", "sequence-type": "addgene-full", "addgene_id": "177344", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-1065603/v1" + ], "kit": null, "file": "data/addgene_plasmids/177344.addgene-full.gb" }, @@ -106240,7 +133911,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp5", "sequence-type": "addgene-full", "addgene_id": "168954", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168954.addgene-full.gb" }, @@ -106249,7 +133923,10 @@ "plasmid_name": "pLenti CRISPR V2 sgMTHFD1L_2", "sequence-type": "addgene-full", "addgene_id": "106317", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106317.addgene-full.gb" }, @@ -106258,7 +133935,10 @@ "plasmid_name": "pT3-EF1a-NICD1", "sequence-type": "addgene-full", "addgene_id": "46047", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI63212", + "https://www.ncbi.nlm.nih.gov/pubmed/22797301" + ], "kit": null, "file": "data/addgene_plasmids/46047.addgene-full.gb" }, @@ -106267,7 +133947,10 @@ "plasmid_name": "pEN_TT BirA*-3xFLAG-CSE1L", "sequence-type": "addgene-full", "addgene_id": "192312", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192312.addgene-full.gb" }, @@ -106276,7 +133959,10 @@ "plasmid_name": "pENTR-ZmIAA10", "sequence-type": "addgene-full", "addgene_id": "188434", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188434.addgene-full.gb" }, @@ -106285,7 +133971,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP11", "sequence-type": "addgene-full", "addgene_id": "158362", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158362.addgene-full.gb" }, @@ -106294,7 +133983,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir-128-1", "sequence-type": "depositor-full", "addgene_id": "46675", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46675.depositor-full.gb" }, @@ -106303,7 +133995,6 @@ "plasmid_name": "pFRT-TODestGFP_HuB", "sequence-type": "depositor-full", "addgene_id": "65761", - "references": [], "kit": null, "file": "data/addgene_plasmids/65761.depositor-full.gb" }, @@ -106312,7 +134003,10 @@ "plasmid_name": "pDONR221-OSF-TRIM5-21R", "sequence-type": "depositor-full", "addgene_id": "79063", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.16269", + "https://www.ncbi.nlm.nih.gov/pubmed/27253068" + ], "kit": null, "file": "data/addgene_plasmids/79063.depositor-full.gb" }, @@ -106321,7 +134015,10 @@ "plasmid_name": "pDONR221-SLC25A21_STOP", "sequence-type": "addgene-full", "addgene_id": "161205", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161205.addgene-full.gb" }, @@ -106330,7 +134027,9 @@ "plasmid_name": "p5E-TetO8x-CMVmin (JDW 1087)", "sequence-type": "addgene-full", "addgene_id": "224475", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224475.addgene-full.gb" }, @@ -106339,7 +134038,6 @@ "plasmid_name": "R777-E212 Hs.RAC3-nostop", "sequence-type": "depositor-full", "addgene_id": "70496", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -106351,7 +134049,10 @@ "plasmid_name": "pAG303GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14325", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -106363,7 +134064,10 @@ "plasmid_name": "actc1b-mKate2-Rac1-DN", "sequence-type": "addgene-full", "addgene_id": "109530", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109530.addgene-full.gb" }, @@ -106372,7 +134076,10 @@ "plasmid_name": "TFORF2938", "sequence-type": "addgene-full", "addgene_id": "144414", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144414.addgene-full.gb" }, @@ -106381,7 +134088,10 @@ "plasmid_name": "pDONR221_SLC1A2", "sequence-type": "addgene-full", "addgene_id": "131901", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131901.addgene-full.gb" }, @@ -106390,7 +134100,10 @@ "plasmid_name": "pHAGE-ESR1-Y537S", "sequence-type": "addgene-full", "addgene_id": "116374", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116374.addgene-full.gb" }, @@ -106399,7 +134112,10 @@ "plasmid_name": "TFORF3364", "sequence-type": "addgene-full", "addgene_id": "144840", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144840.addgene-full.gb" }, @@ -106408,7 +134124,10 @@ "plasmid_name": "pDONR223_DCAF8_p.R559P", "sequence-type": "addgene-full", "addgene_id": "82789", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82789.addgene-full.gb" }, @@ -106417,7 +134136,10 @@ "plasmid_name": "TFORF3534", "sequence-type": "depositor-full", "addgene_id": "145010", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145010.depositor-full.gb" }, @@ -106426,7 +134148,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep290", "sequence-type": "addgene-full", "addgene_id": "136853", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136853.addgene-full.gb" }, @@ -106435,7 +134160,6 @@ "plasmid_name": "LEMD3_BirA_Cterm", "sequence-type": "addgene-full", "addgene_id": "221517", - "references": [], "kit": null, "file": "data/addgene_plasmids/221517.addgene-full.gb" }, @@ -106444,7 +134168,10 @@ "plasmid_name": "pHAGE-BRAF-E586K", "sequence-type": "addgene-full", "addgene_id": "116140", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116140.addgene-full.gb" }, @@ -106453,7 +134180,6 @@ "plasmid_name": "pCWXPGR-pTF-Epo", "sequence-type": "addgene-full", "addgene_id": "114290", - "references": [], "kit": null, "file": "data/addgene_plasmids/114290.addgene-full.gb" }, @@ -106462,7 +134188,10 @@ "plasmid_name": "pDONR221-kcnk10a", "sequence-type": "addgene-full", "addgene_id": "208993", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208993.addgene-full.gb" }, @@ -106471,7 +134200,10 @@ "plasmid_name": "pYPQ284 (Mb2Cas12a)", "sequence-type": "addgene-full", "addgene_id": "138116", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138116.addgene-full.gb" }, @@ -106480,7 +134212,10 @@ "plasmid_name": "pDONR223_ACVR2A_WT", "sequence-type": "addgene-full", "addgene_id": "81840", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -106492,7 +134227,6 @@ "plasmid_name": "R777-E341 Hs.TBK1", "sequence-type": "depositor-full", "addgene_id": "70625", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -106504,7 +134238,10 @@ "plasmid_name": "pJA304", "sequence-type": "depositor-full", "addgene_id": "28091", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "file": "data/addgene_plasmids/28091.depositor-full.gb" }, @@ -106513,7 +134250,10 @@ "plasmid_name": "pAG416GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14196", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -106525,7 +134265,10 @@ "plasmid_name": "pENTR223-BPLF1_501-1500", "sequence-type": "addgene-full", "addgene_id": "198583", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198583.addgene-full.gb" }, @@ -106534,7 +134277,10 @@ "plasmid_name": "pDONR221-SLC6A14_STOP", "sequence-type": "addgene-full", "addgene_id": "161031", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161031.addgene-full.gb" }, @@ -106543,7 +134289,10 @@ "plasmid_name": "IR904: pMVP (L3-L2) pA; CMV::eGFP-P2A-TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121799", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121799.addgene-full.gb" }, @@ -106552,7 +134301,10 @@ "plasmid_name": "pDONR223_CNBD1_p.L396R", "sequence-type": "addgene-full", "addgene_id": "81414", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -106564,7 +134316,10 @@ "plasmid_name": "pEPYCeGM0012", "sequence-type": "addgene-full", "addgene_id": "196146", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196146.addgene-full.gb" }, @@ -106573,7 +134328,10 @@ "plasmid_name": "p3E-rab3ab", "sequence-type": "addgene-full", "addgene_id": "109704", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109704.addgene-full.gb" }, @@ -106582,7 +134340,10 @@ "plasmid_name": "pCWX-R4-DEST-R2-PG", "sequence-type": "depositor-full", "addgene_id": "45957", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-61779-095-9_8", + "https://www.ncbi.nlm.nih.gov/pubmed/21590398" + ], "kit": null, "file": "data/addgene_plasmids/45957.depositor-full.gb" }, @@ -106591,7 +134352,10 @@ "plasmid_name": "pBA cHA-FG1", "sequence-type": "addgene-full", "addgene_id": "118665", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118665.addgene-full.gb" }, @@ -106600,7 +134364,10 @@ "plasmid_name": "pENTR2b-mTurquoise2", "sequence-type": "addgene-full", "addgene_id": "191014", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adg1840", + "https://www.ncbi.nlm.nih.gov/pubmed/37436978" + ], "kit": null, "file": "data/addgene_plasmids/191014.addgene-full.gb" }, @@ -106609,7 +134376,9 @@ "plasmid_name": "pDONR221-DDX5", "sequence-type": "addgene-full", "addgene_id": "166163", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166163.addgene-full.gb" }, @@ -106618,7 +134387,10 @@ "plasmid_name": "pDONR223-ZNF219", "sequence-type": "addgene-full", "addgene_id": "88118", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88118.addgene-full.gb" }, @@ -106627,7 +134399,10 @@ "plasmid_name": "pDONR223_GABPB1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82972", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82972.addgene-full.gb" }, @@ -106636,7 +134411,10 @@ "plasmid_name": "VanGlow-GL", "sequence-type": "depositor-full", "addgene_id": "83342", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.01.014", + "https://www.ncbi.nlm.nih.gov/pubmed/28245922" + ], "kit": null, "file": "data/addgene_plasmids/83342.depositor-full.gb" }, @@ -106645,7 +134423,10 @@ "plasmid_name": "MAC3-FGFR1", "sequence-type": "addgene-full", "addgene_id": "222611", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-0716-3327-4_24", + "https://www.ncbi.nlm.nih.gov/pubmed/37450155" + ], "kit": null, "file": "data/addgene_plasmids/222611.addgene-full.gb" }, @@ -106654,7 +134435,10 @@ "plasmid_name": "IO801: pMVP (L5-L4) 3x FLAG epitope tag", "sequence-type": "addgene-full", "addgene_id": "121702", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121702.addgene-full.gb" }, @@ -106663,7 +134447,10 @@ "plasmid_name": "pLVU/RED", "sequence-type": "addgene-full", "addgene_id": "24178", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2010.01.002", + "https://www.ncbi.nlm.nih.gov/pubmed/20132838" + ], "kit": null, "file": "data/addgene_plasmids/24178.addgene-full.gb" }, @@ -106672,7 +134459,10 @@ "plasmid_name": "pGWB535", "sequence-type": "depositor-full", "addgene_id": "74873", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74873.depositor-full.gb" }, @@ -106681,7 +134471,10 @@ "plasmid_name": "pMMK ENTR 4 CMV mTagBFP", "sequence-type": "addgene-full", "addgene_id": "206279", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206279.addgene-full.gb" }, @@ -106690,7 +134483,10 @@ "plasmid_name": "E42_gControl_dTet_IRES_mTurquoise2", "sequence-type": "addgene-full", "addgene_id": "189799", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2018.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29924977" + ], "kit": null, "file": "data/addgene_plasmids/189799.addgene-full.gb" }, @@ -106699,7 +134495,10 @@ "plasmid_name": "AAEL006636 DSK R", "sequence-type": "addgene-full", "addgene_id": "115392", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115392.addgene-full.gb" }, @@ -106708,7 +134507,10 @@ "plasmid_name": "pLEX_305-N-dTAG", "sequence-type": "addgene-full", "addgene_id": "91797", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0021-8", + "https://www.ncbi.nlm.nih.gov/pubmed/29581585" + ], "kit": null, "file": "data/addgene_plasmids/91797.addgene-full.gb" }, @@ -106717,7 +134519,10 @@ "plasmid_name": "pYPQ142", "sequence-type": "depositor-full", "addgene_id": "69294", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69294.depositor-full.gb" }, @@ -106726,7 +134531,9 @@ "plasmid_name": "pDONR221-TM9SF3", "sequence-type": "addgene-full", "addgene_id": "166218", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166218.addgene-full.gb" }, @@ -106735,7 +134542,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp12", "sequence-type": "addgene-full", "addgene_id": "168969", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168969.addgene-full.gb" }, @@ -106744,7 +134554,10 @@ "plasmid_name": "pAFMW-Nbr[K216E]", "sequence-type": "addgene-full", "addgene_id": "188600", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188600.addgene-full.gb" }, @@ -106753,7 +134566,9 @@ "plasmid_name": "pDONR221 hNLRP3-mNG-STOP", "sequence-type": "addgene-full", "addgene_id": "218644", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218644.addgene-full.gb" }, @@ -106762,7 +134577,6 @@ "plasmid_name": "R777-E058 Hs.EIF4EBP2-nostop", "sequence-type": "depositor-full", "addgene_id": "70342", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -106774,7 +134588,10 @@ "plasmid_name": "pDD377", "sequence-type": "addgene-full", "addgene_id": "91823", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "file": "data/addgene_plasmids/91823.addgene-full.gb" }, @@ -106783,7 +134600,10 @@ "plasmid_name": "pENTR D-TOPO-C3_19", "sequence-type": "depositor-full", "addgene_id": "60265", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60265.depositor-full.gb" }, @@ -106792,7 +134612,10 @@ "plasmid_name": "pDONR221-SLC44A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161079", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161079.addgene-full.gb" }, @@ -106801,7 +134624,10 @@ "plasmid_name": "JN302: pMVP/SB/Puro-DEST", "sequence-type": "addgene-full", "addgene_id": "121865", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121865.addgene-full.gb" }, @@ -106810,7 +134636,10 @@ "plasmid_name": "pJA254", "sequence-type": "depositor-full", "addgene_id": "21507", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "file": "data/addgene_plasmids/21507.depositor-full.gb" }, @@ -106819,7 +134648,10 @@ "plasmid_name": "plenti-CAG-IRF4-FLAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "107389", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107389.addgene-full.gb" }, @@ -106828,7 +134660,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-HIPK4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158185", - "references": [], "kit": null, "file": "data/addgene_plasmids/158185.addgene-full.gb" }, @@ -106837,7 +134668,10 @@ "plasmid_name": "TFORF3192", "sequence-type": "addgene-full", "addgene_id": "144668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144668.addgene-full.gb" }, @@ -106846,7 +134680,10 @@ "plasmid_name": "pAG304GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14208", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -106858,7 +134695,10 @@ "plasmid_name": "TFORF3112", "sequence-type": "addgene-full", "addgene_id": "144588", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144588.addgene-full.gb" }, @@ -106867,7 +134707,10 @@ "plasmid_name": "pHAGE-ALK-F1174L", "sequence-type": "addgene-full", "addgene_id": "116108", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116108.addgene-full.gb" }, @@ -106876,7 +134719,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP1_nostop", "sequence-type": "addgene-full", "addgene_id": "149304", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149304.addgene-full.gb" }, @@ -106885,7 +134731,10 @@ "plasmid_name": "pDONR221-SLC7A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161399", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161399.addgene-full.gb" }, @@ -106894,7 +134743,10 @@ "plasmid_name": "pDONR221-SLC4A10_STOP", "sequence-type": "depositor-full", "addgene_id": "161474", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161474.depositor-full.gb" }, @@ -106903,7 +134755,10 @@ "plasmid_name": "pDONR221-SLC30A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161302", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161302.addgene-full.gb" }, @@ -106912,7 +134767,6 @@ "plasmid_name": "p42Nat 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58549", - "references": [], "kit": null, "file": "data/addgene_plasmids/58549.depositor-full.gb" }, @@ -106921,7 +134775,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.G34E", "sequence-type": "addgene-full", "addgene_id": "81727", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -106933,7 +134790,10 @@ "plasmid_name": "pEF5B-FRT-GFP-\u03b1TAT1", "sequence-type": "addgene-full", "addgene_id": "27099", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1013728107", + "https://www.ncbi.nlm.nih.gov/pubmed/21068373" + ], "kit": null, "file": "data/addgene_plasmids/27099.addgene-full.gb" }, @@ -106942,7 +134802,10 @@ "plasmid_name": "CPEB1", "sequence-type": "addgene-full", "addgene_id": "155472", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155472.addgene-full.gb" }, @@ -106951,7 +134814,10 @@ "plasmid_name": "TFORF3037", "sequence-type": "addgene-full", "addgene_id": "144513", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144513.addgene-full.gb" }, @@ -106960,7 +134826,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp15", "sequence-type": "addgene-full", "addgene_id": "168921", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168921.addgene-full.gb" }, @@ -106969,7 +134838,10 @@ "plasmid_name": "pHAGE-BRAF-Q609E", "sequence-type": "addgene-full", "addgene_id": "116193", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116193.addgene-full.gb" }, @@ -106978,7 +134850,10 @@ "plasmid_name": "pHAGE-EGFR-L833V", "sequence-type": "addgene-full", "addgene_id": "116273", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116273.addgene-full.gb" }, @@ -106987,7 +134862,10 @@ "plasmid_name": "TFORF3471", "sequence-type": "addgene-full", "addgene_id": "144947", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144947.addgene-full.gb" }, @@ -106996,7 +134874,10 @@ "plasmid_name": "pENT-L1-Kozak-lacZ-stop-L2", "sequence-type": "addgene-full", "addgene_id": "186359", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186359.addgene-full.gb" }, @@ -107005,7 +134886,6 @@ "plasmid_name": "pCW57.1_V5_BirA*_FLAG_Ct", "sequence-type": "addgene-full", "addgene_id": "194071", - "references": [], "kit": null, "file": "data/addgene_plasmids/194071.addgene-full.gb" }, @@ -107014,7 +134894,10 @@ "plasmid_name": "pmyc-MOV10", "sequence-type": "depositor-full", "addgene_id": "10977", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2005.10.048", + "https://www.ncbi.nlm.nih.gov/pubmed/16289642" + ], "kit": null, "file": "data/addgene_plasmids/10977.depositor-full.gb" }, @@ -107023,7 +134906,10 @@ "plasmid_name": "pKG-GW2-NgBR R290H", "sequence-type": "addgene-full", "addgene_id": "203167", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2014.06.016", + "https://www.ncbi.nlm.nih.gov/pubmed/25066056" + ], "kit": null, "file": "data/addgene_plasmids/203167.addgene-full.gb" }, @@ -107032,7 +134918,10 @@ "plasmid_name": "pAB-HDAC5(mut-H-A)", "sequence-type": "addgene-full", "addgene_id": "114397", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114397.addgene-full.gb" }, @@ -107041,7 +134930,6 @@ "plasmid_name": "pgLAP1", "sequence-type": "depositor-full", "addgene_id": "19702", - "references": [], "kit": null, "file": "data/addgene_plasmids/19702.depositor-full.gb" }, @@ -107050,7 +134938,10 @@ "plasmid_name": "pDONR223_SAMHD1_p.D218H", "sequence-type": "addgene-full", "addgene_id": "81513", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -107062,7 +134953,10 @@ "plasmid_name": "pDEST-CMV GFP-LC3B Q116P G120", "sequence-type": "addgene-full", "addgene_id": "129290", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129290.addgene-full.gb" }, @@ -107071,7 +134965,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1", "sequence-type": "addgene-full", "addgene_id": "187120", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187120.addgene-full.gb" }, @@ -107080,7 +134977,10 @@ "plasmid_name": "pDONR221-SLC25A39_STOP", "sequence-type": "addgene-full", "addgene_id": "161136", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161136.addgene-full.gb" }, @@ -107089,7 +134989,10 @@ "plasmid_name": "pAG423GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14246", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -107101,7 +135004,10 @@ "plasmid_name": "pENTR-R4r-HCN1miR-EGFP-R3r", "sequence-type": "depositor-full", "addgene_id": "32586", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32586.depositor-full.gb" }, @@ -107110,7 +135016,10 @@ "plasmid_name": "TFORF3417", "sequence-type": "addgene-full", "addgene_id": "144893", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144893.addgene-full.gb" }, @@ -107119,7 +135028,10 @@ "plasmid_name": "TFORF3251", "sequence-type": "addgene-full", "addgene_id": "144727", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144727.addgene-full.gb" }, @@ -107128,7 +135040,10 @@ "plasmid_name": "p3E-2xFYVE_hrs", "sequence-type": "depositor-full", "addgene_id": "67676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67676.depositor-full.gb" }, @@ -107137,7 +135052,9 @@ "plasmid_name": "pMpGWB230", "sequence-type": "depositor-full", "addgene_id": "68621", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68621.depositor-full.gb" }, @@ -107146,7 +135063,10 @@ "plasmid_name": "actc1b-mKate2-rab18a", "sequence-type": "addgene-full", "addgene_id": "109603", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109603.addgene-full.gb" }, @@ -107155,7 +135075,10 @@ "plasmid_name": "pDON221 ORF3a Q57H", "sequence-type": "addgene-full", "addgene_id": "180072", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180072.addgene-full.gb" }, @@ -107164,7 +135087,10 @@ "plasmid_name": "pLSLZ", "sequence-type": "depositor-full", "addgene_id": "51495", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51495.depositor-full.gb" }, @@ -107173,7 +135099,10 @@ "plasmid_name": "TFORF3332", "sequence-type": "addgene-full", "addgene_id": "144808", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144808.addgene-full.gb" }, @@ -107182,7 +135111,10 @@ "plasmid_name": "pDONR221_SLCO2A1", "sequence-type": "addgene-full", "addgene_id": "131949", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131949.addgene-full.gb" }, @@ -107191,7 +135123,10 @@ "plasmid_name": "pcDNA3.2/NS4A-2K-NS4B", "sequence-type": "addgene-full", "addgene_id": "120828", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120828.addgene-full.gb" }, @@ -107200,7 +135135,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-7", "sequence-type": "depositor-full", "addgene_id": "46716", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46716.depositor-full.gb" }, @@ -107209,7 +135147,10 @@ "plasmid_name": "pDONR223_STAG2_p.L997W", "sequence-type": "addgene-full", "addgene_id": "81588", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -107221,7 +135162,10 @@ "plasmid_name": "pDONR223_PIK3CA_p.R108H", "sequence-type": "addgene-full", "addgene_id": "82875", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82875.addgene-full.gb" }, @@ -107230,7 +135174,10 @@ "plasmid_name": "pHvL1P3GA", "sequence-type": "addgene-full", "addgene_id": "112027", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-8944-7_14", + "https://www.ncbi.nlm.nih.gov/pubmed/30460568" + ], "kit": null, "file": "data/addgene_plasmids/112027.addgene-full.gb" }, @@ -107239,7 +135186,10 @@ "plasmid_name": "pENTR221-H1-sgHTT1-U6-sgGFP2-7SK-sgCas9", "sequence-type": "addgene-full", "addgene_id": "87917", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87917.addgene-full.gb" }, @@ -107248,7 +135198,10 @@ "plasmid_name": "pDONR223_VHL_p.L158V", "sequence-type": "addgene-full", "addgene_id": "81668", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -107260,7 +135213,10 @@ "plasmid_name": "pDONR221-SLC1A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161044", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161044.addgene-full.gb" }, @@ -107269,7 +135225,10 @@ "plasmid_name": "KJ801: pMVP/Hygro-DEST", "sequence-type": "addgene-full", "addgene_id": "121858", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121858.addgene-full.gb" }, @@ -107278,7 +135237,10 @@ "plasmid_name": "pCMB-APr", "sequence-type": "depositor-full", "addgene_id": "61183", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61183.depositor-full.gb" }, @@ -107287,7 +135249,10 @@ "plasmid_name": "pDONR223_SLC2A3_p.K49N", "sequence-type": "addgene-full", "addgene_id": "81461", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -107299,7 +135264,10 @@ "plasmid_name": "TFORF3179", "sequence-type": "addgene-full", "addgene_id": "144655", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144655.addgene-full.gb" }, @@ -107308,7 +135276,10 @@ "plasmid_name": "pHAGE-BRAF-D594A", "sequence-type": "addgene-full", "addgene_id": "116135", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116135.addgene-full.gb" }, @@ -107317,7 +135288,10 @@ "plasmid_name": "pInducer10-UBC9-sh3", "sequence-type": "addgene-full", "addgene_id": "168987", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1415569112", + "https://www.ncbi.nlm.nih.gov/pubmed/25805818" + ], "kit": null, "file": "data/addgene_plasmids/168987.addgene-full.gb" }, @@ -107326,7 +135300,10 @@ "plasmid_name": "PB-TET-mKLF4", "sequence-type": "depositor-full", "addgene_id": "20906", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "file": "data/addgene_plasmids/20906.depositor-full.gb" }, @@ -107335,7 +135312,10 @@ "plasmid_name": "actc1b-mKate2-MTM1", "sequence-type": "addgene-full", "addgene_id": "109491", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109491.addgene-full.gb" }, @@ -107344,7 +135324,10 @@ "plasmid_name": "pMOS012E: Entry vector for: Grx1-roGFP1-iE_ER glutathione redox sensor (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163074", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163074.addgene-full.gb" }, @@ -107353,7 +135336,10 @@ "plasmid_name": "pDEST17-UbE2D3", "sequence-type": "addgene-full", "addgene_id": "15784", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "file": "data/addgene_plasmids/15784.addgene-full.gb" }, @@ -107362,7 +135348,10 @@ "plasmid_name": "pMDJ39 - Peft-3 Cre (PATCs)", "sequence-type": "addgene-full", "addgene_id": "191381", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac184", + "https://www.ncbi.nlm.nih.gov/pubmed/35900171" + ], "kit": null, "file": "data/addgene_plasmids/191381.addgene-full.gb" }, @@ -107383,7 +135372,10 @@ "plasmid_name": "pMuLE ENTR 7SK L5-L2", "sequence-type": "depositor-full", "addgene_id": "62108", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62108.depositor-full.gb" }, @@ -107392,7 +135384,10 @@ "plasmid_name": "pLenti CMV Hygro DEST (w117-1)", "sequence-type": "addgene-full", "addgene_id": "17454", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17454.addgene-full.gb" }, @@ -107401,7 +135396,10 @@ "plasmid_name": "pDONR223_A4GALT_WT", "sequence-type": "addgene-full", "addgene_id": "81835", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -107413,7 +135411,10 @@ "plasmid_name": "pCM1.41", "sequence-type": "depositor-full", "addgene_id": "21379", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21379.depositor-full.gb" }, @@ -107422,7 +135423,10 @@ "plasmid_name": "Active Wnt6-V5", "sequence-type": "depositor-full", "addgene_id": "43815", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43815.depositor-full.gb" }, @@ -107431,7 +135435,10 @@ "plasmid_name": "pAFMW-Nbr[K284A]", "sequence-type": "addgene-full", "addgene_id": "188595", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188595.addgene-full.gb" }, @@ -107440,7 +135447,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP6_stop", "sequence-type": "addgene-full", "addgene_id": "168548", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168548.addgene-full.gb" }, @@ -107449,7 +135459,9 @@ "plasmid_name": "pMpGWB122", "sequence-type": "depositor-full", "addgene_id": "68576", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68576.depositor-full.gb" }, @@ -107458,7 +135470,10 @@ "plasmid_name": "pSAM2_mCherry_Isl1", "sequence-type": "addgene-full", "addgene_id": "72696", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72696.addgene-full.gb" }, @@ -107467,7 +135482,10 @@ "plasmid_name": "pDONR223_ARAF_p.S214C", "sequence-type": "addgene-full", "addgene_id": "82907", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82907.addgene-full.gb" }, @@ -107476,7 +135494,10 @@ "plasmid_name": "LD001: pMVP (L3-L2) eYFP + WPRE", "sequence-type": "addgene-full", "addgene_id": "121777", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121777.addgene-full.gb" }, @@ -107485,7 +135506,6 @@ "plasmid_name": "Hs.KRAS4b S181E", "sequence-type": "depositor-full", "addgene_id": "83138", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -107497,7 +135517,10 @@ "plasmid_name": "pDONR221-SLC2A6_STOP", "sequence-type": "depositor-full", "addgene_id": "161244", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161244.depositor-full.gb" }, @@ -107506,7 +135529,10 @@ "plasmid_name": "pLenti CMV Puro DHFR.cHSF1", "sequence-type": "addgene-full", "addgene_id": "134739", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.28652", + "https://www.ncbi.nlm.nih.gov/pubmed/28949290" + ], "kit": null, "file": "data/addgene_plasmids/134739.addgene-full.gb" }, @@ -107515,7 +135541,10 @@ "plasmid_name": "pCW57.1-p37-SHPmut-FLAG", "sequence-type": "addgene-full", "addgene_id": "225502", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adl6082", + "https://www.ncbi.nlm.nih.gov/pubmed/38701207" + ], "kit": null, "file": "data/addgene_plasmids/225502.addgene-full.gb" }, @@ -107524,7 +135553,6 @@ "plasmid_name": "V5-WT-long-UBASH3A", "sequence-type": "addgene-full", "addgene_id": "192087", - "references": [], "kit": null, "file": "data/addgene_plasmids/192087.addgene-full.gb" }, @@ -107533,7 +135561,6 @@ "plasmid_name": "pAM-35s-CBL8-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102399", - "references": [], "kit": null, "file": "data/addgene_plasmids/102399.addgene-full.gb" }, @@ -107542,7 +135569,10 @@ "plasmid_name": "pDONR207 SARS-CoV2 TEV-NSP3", "sequence-type": "addgene-full", "addgene_id": "154402", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154402.addgene-full.gb" }, @@ -107551,7 +135581,10 @@ "plasmid_name": "pDONR223_PIK3R3_p.P127L", "sequence-type": "addgene-full", "addgene_id": "82767", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82767.addgene-full.gb" }, @@ -107560,7 +135593,10 @@ "plasmid_name": "tetO-TBX5", "sequence-type": "addgene-full", "addgene_id": "46032", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "file": "data/addgene_plasmids/46032.addgene-full.gb" }, @@ -107569,7 +135605,10 @@ "plasmid_name": "pLX304_zeo", "sequence-type": "addgene-full", "addgene_id": "160092", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160092.addgene-full.gb" }, @@ -107578,7 +135617,10 @@ "plasmid_name": "pENTR-ZmIAA29 (yeast codon optimized)", "sequence-type": "addgene-full", "addgene_id": "188441", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188441.addgene-full.gb" }, @@ -107587,7 +135629,10 @@ "plasmid_name": "pMuLE ENTR CMV mCherry L5-L2", "sequence-type": "depositor-full", "addgene_id": "62146", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62146.depositor-full.gb" }, @@ -107596,7 +135641,6 @@ "plasmid_name": "R777-E127 Hs.MAPK3", "sequence-type": "depositor-full", "addgene_id": "70411", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -107608,7 +135652,10 @@ "plasmid_name": "pDONR221_SLC1A5", "sequence-type": "addgene-full", "addgene_id": "131974", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131974.addgene-full.gb" }, @@ -107617,7 +135664,10 @@ "plasmid_name": "TFORF3305", "sequence-type": "addgene-full", "addgene_id": "144781", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144781.addgene-full.gb" }, @@ -107626,7 +135676,10 @@ "plasmid_name": "TFORF3359", "sequence-type": "addgene-full", "addgene_id": "144835", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144835.addgene-full.gb" }, @@ -107635,7 +135688,10 @@ "plasmid_name": "pHAGE-EGFR-S229C", "sequence-type": "addgene-full", "addgene_id": "116301", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116301.addgene-full.gb" }, @@ -107644,7 +135700,10 @@ "plasmid_name": "pMXs-hu-c-Myc-dN1", "sequence-type": "depositor-full", "addgene_id": "50773", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "file": "data/addgene_plasmids/50773.depositor-full.gb" }, @@ -107653,7 +135712,10 @@ "plasmid_name": "pCM5.52", "sequence-type": "depositor-full", "addgene_id": "19381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19381.depositor-full.gb" }, @@ -107662,7 +135724,9 @@ "plasmid_name": "pGem-nHyPer2:sHyper2", "sequence-type": "addgene-full", "addgene_id": "84737", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "file": "data/addgene_plasmids/84737.addgene-full.gb" }, @@ -107671,7 +135735,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hSFRP1-GST", "sequence-type": "addgene-full", "addgene_id": "189543", - "references": [], "kit": null, "file": "data/addgene_plasmids/189543.addgene-full.gb" }, @@ -107680,7 +135743,10 @@ "plasmid_name": "pDONR223_EGFR_p.T790M", "sequence-type": "addgene-full", "addgene_id": "82848", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82848.addgene-full.gb" }, @@ -107689,7 +135755,10 @@ "plasmid_name": "pDONR221-SLC22A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161190", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161190.addgene-full.gb" }, @@ -107698,7 +135767,10 @@ "plasmid_name": "pEBTetD-SNAP-\u03b1-tubulin", "sequence-type": "addgene-full", "addgene_id": "136792", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136792.addgene-full.gb" }, @@ -107707,7 +135779,10 @@ "plasmid_name": "pEBTet-SNAP-Cep131", "sequence-type": "addgene-full", "addgene_id": "136826", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136826.addgene-full.gb" }, @@ -107716,7 +135791,10 @@ "plasmid_name": "pFRT/TO/GFP-SCAF4 (CRISPR_resistant)", "sequence-type": "addgene-full", "addgene_id": "122471", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "file": "data/addgene_plasmids/122471.addgene-full.gb" }, @@ -107725,7 +135803,10 @@ "plasmid_name": "pDEST26 Ago2 S387E", "sequence-type": "depositor-full", "addgene_id": "59906", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2013.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/23603119" + ], "kit": null, "file": "data/addgene_plasmids/59906.depositor-full.gb" }, @@ -107734,7 +135815,10 @@ "plasmid_name": "pDONR223_PTEN_p.R233Q", "sequence-type": "addgene-full", "addgene_id": "81655", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -107746,7 +135830,10 @@ "plasmid_name": "pDONR221-ZNF732", "sequence-type": "depositor-full", "addgene_id": "101446", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101446.depositor-full.gb" }, @@ -107755,7 +135842,10 @@ "plasmid_name": "pDONR221-SLC27A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161270", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161270.addgene-full.gb" }, @@ -107764,7 +135854,10 @@ "plasmid_name": "AdMKP-3 S159A", "sequence-type": "addgene-full", "addgene_id": "131520", - "references": [], + "references": [ + "https://doi.org/10.1016/j.mce.2012.03.025", + "https://www.ncbi.nlm.nih.gov/pubmed/22521266" + ], "kit": null, "file": "data/addgene_plasmids/131520.addgene-full.gb" }, @@ -107773,7 +135866,6 @@ "plasmid_name": "Hs.NRAS G12D", "sequence-type": "depositor-full", "addgene_id": "83176", - "references": [], "kit": null, "file": "data/addgene_plasmids/83176.depositor-full.gb" }, @@ -107782,7 +135874,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF3a", "sequence-type": "addgene-full", "addgene_id": "168853", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168853.addgene-full.gb" }, @@ -107791,7 +135886,10 @@ "plasmid_name": "pME-Lifeact", "sequence-type": "addgene-full", "addgene_id": "109545", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109545.addgene-full.gb" }, @@ -107800,7 +135898,10 @@ "plasmid_name": "TFORF2985", "sequence-type": "addgene-full", "addgene_id": "144461", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144461.addgene-full.gb" }, @@ -107809,7 +135910,10 @@ "plasmid_name": "pcDNA3.1 GW-mCit-PA", "sequence-type": "addgene-full", "addgene_id": "113449", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113449.addgene-full.gb" }, @@ -107818,7 +135922,10 @@ "plasmid_name": "pDONR221_SLC36A4", "sequence-type": "addgene-full", "addgene_id": "132143", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132143.addgene-full.gb" }, @@ -107827,7 +135934,6 @@ "plasmid_name": "EEF1A2 - I438M in pENTR", "sequence-type": "addgene-full", "addgene_id": "216591", - "references": [], "kit": null, "file": "data/addgene_plasmids/216591.addgene-full.gb" }, @@ -107836,7 +135942,10 @@ "plasmid_name": "Flag-HA-USP10", "sequence-type": "addgene-full", "addgene_id": "22543", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22543.addgene-full.gb" }, @@ -107845,7 +135954,10 @@ "plasmid_name": "pGL4_CRE-CMV-BC0490-luc2", "sequence-type": "addgene-full", "addgene_id": "214641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214641.addgene-full.gb" }, @@ -107854,7 +135966,10 @@ "plasmid_name": "pLD-puro-CcVA", "sequence-type": "addgene-full", "addgene_id": "24588", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.M000002-MCP201", + "https://www.ncbi.nlm.nih.gov/pubmed/20305087" + ], "kit": null, "file": "data/addgene_plasmids/24588.addgene-full.gb" }, @@ -107863,7 +135978,10 @@ "plasmid_name": "pDONR223_SUV39H1_WT", "sequence-type": "addgene-full", "addgene_id": "82236", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82236.addgene-full.gb" }, @@ -107872,7 +135990,6 @@ "plasmid_name": "R777-E241 Hs.RASGRF2", "sequence-type": "depositor-full", "addgene_id": "70525", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -107884,7 +136001,10 @@ "plasmid_name": "pAG424GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14296", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -107896,7 +136016,10 @@ "plasmid_name": "pAG426GAL-ccdB-EGFP", "sequence-type": "addgene-full", "addgene_id": "14203", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -107908,7 +136031,10 @@ "plasmid_name": "pLD-puro-Cc-TARDBP-A315T_VA", "sequence-type": "addgene-full", "addgene_id": "141329", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "file": "data/addgene_plasmids/141329.addgene-full.gb" }, @@ -107917,7 +136043,6 @@ "plasmid_name": "pDD373", "sequence-type": "addgene-full", "addgene_id": "137021", - "references": [], "kit": null, "file": "data/addgene_plasmids/137021.addgene-full.gb" }, @@ -107926,7 +136051,10 @@ "plasmid_name": "pWZL Neo Myr Flag PIK3CB", "sequence-type": "addgene-full", "addgene_id": "20573", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20573.addgene-full.gb" }, @@ -107935,7 +136063,10 @@ "plasmid_name": "pAG303-Gal-PR50", "sequence-type": "depositor-full", "addgene_id": "84905", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "file": "data/addgene_plasmids/84905.depositor-full.gb" }, @@ -107944,7 +136075,10 @@ "plasmid_name": "pDONR221-ZNF716", "sequence-type": "addgene-full", "addgene_id": "101481", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101481.addgene-full.gb" }, @@ -107953,7 +136087,10 @@ "plasmid_name": "pDONR221_SLC44A4", "sequence-type": "addgene-full", "addgene_id": "132238", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132238.addgene-full.gb" }, @@ -107962,7 +136099,10 @@ "plasmid_name": "pAAV_2pabPAC", "sequence-type": "addgene-full", "addgene_id": "158969", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.0c00333", + "https://www.ncbi.nlm.nih.gov/pubmed/33074647" + ], "kit": null, "file": "data/addgene_plasmids/158969.addgene-full.gb" }, @@ -107971,7 +136111,10 @@ "plasmid_name": "pDONR223_C1orf150_p.Y89N", "sequence-type": "addgene-full", "addgene_id": "81304", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -107983,7 +136126,10 @@ "plasmid_name": "MAC_N_ELF2", "sequence-type": "addgene-full", "addgene_id": "187737", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187737.addgene-full.gb" }, @@ -107992,7 +136138,10 @@ "plasmid_name": "pDest-305 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161895", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -108004,7 +136153,10 @@ "plasmid_name": "pENTR1a-MTS-jAspSnFR3-mRuby3", "sequence-type": "addgene-full", "addgene_id": "203490", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "file": "data/addgene_plasmids/203490.addgene-full.gb" }, @@ -108013,7 +136165,10 @@ "plasmid_name": "pCMU-AUTr", "sequence-type": "depositor-full", "addgene_id": "61204", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61204.depositor-full.gb" }, @@ -108022,7 +136177,10 @@ "plasmid_name": "pCellFree_G06_ZIKVC", "sequence-type": "addgene-full", "addgene_id": "145349", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145349.addgene-full.gb" }, @@ -108031,7 +136189,10 @@ "plasmid_name": "pDL14", "sequence-type": "addgene-full", "addgene_id": "175896", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175896.addgene-full.gb" }, @@ -108040,7 +136201,10 @@ "plasmid_name": "pENTR-L3-eSpCas9n(1.1)-2A-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141052", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141052.addgene-full.gb" }, @@ -108049,7 +136213,10 @@ "plasmid_name": "pDONR223-ZNF800", "sequence-type": "addgene-full", "addgene_id": "88573", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88573.addgene-full.gb" }, @@ -108058,7 +136225,10 @@ "plasmid_name": "pPB-cT3G-cERP2-NR1H2", "sequence-type": "addgene-full", "addgene_id": "192919", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192919.addgene-full.gb" }, @@ -108067,7 +136237,10 @@ "plasmid_name": "pHAGE-RAC1-P29S", "sequence-type": "addgene-full", "addgene_id": "116650", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116650.addgene-full.gb" }, @@ -108076,7 +136249,10 @@ "plasmid_name": "pDONR223_AXIN2_WT", "sequence-type": "addgene-full", "addgene_id": "82099", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82099.addgene-full.gb" }, @@ -108085,7 +136261,10 @@ "plasmid_name": "R979-X57-008: Hs.KRAS4b(1-169)", "sequence-type": "addgene-full", "addgene_id": "159690", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-019-46846-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31324887" + ], "kit": null, "file": "data/addgene_plasmids/159690.addgene-full.gb" }, @@ -108094,7 +136273,10 @@ "plasmid_name": "bactin:GFP-DCX", "sequence-type": "addgene-full", "addgene_id": "105961", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105961.addgene-full.gb" }, @@ -108103,7 +136285,10 @@ "plasmid_name": "pGMCKq20-T38S38-0X", "sequence-type": "depositor-full", "addgene_id": "49522", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "file": "data/addgene_plasmids/49522.depositor-full.gb" }, @@ -108112,7 +136297,10 @@ "plasmid_name": "pHAGE-PIK3CA-D939G", "sequence-type": "addgene-full", "addgene_id": "116464", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116464.addgene-full.gb" }, @@ -108121,7 +136309,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP13", "sequence-type": "addgene-full", "addgene_id": "141266", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141266.addgene-full.gb" }, @@ -108130,7 +136321,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) eGFP", "sequence-type": "addgene-full", "addgene_id": "107505", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107505.addgene-full.gb" }, @@ -108139,7 +136333,10 @@ "plasmid_name": "pCM5.37", "sequence-type": "depositor-full", "addgene_id": "17253", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/17253.depositor-full.gb" }, @@ -108148,7 +136345,10 @@ "plasmid_name": "pACT2-Rcl1", "sequence-type": "addgene-full", "addgene_id": "99992", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99992.addgene-full.gb" }, @@ -108157,7 +136357,10 @@ "plasmid_name": "pDEST-mCherry-LacR-BRCA1", "sequence-type": "addgene-full", "addgene_id": "71115", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71115.addgene-full.gb" }, @@ -108166,7 +136369,10 @@ "plasmid_name": "pHAGE-RAD50", "sequence-type": "addgene-full", "addgene_id": "116784", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116784.addgene-full.gb" }, @@ -108175,7 +136381,10 @@ "plasmid_name": "pSEM238", "sequence-type": "addgene-full", "addgene_id": "161515", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000349", + "https://www.ncbi.nlm.nih.gov/pubmed/33437931" + ], "kit": null, "file": "data/addgene_plasmids/161515.addgene-full.gb" }, @@ -108184,7 +136393,10 @@ "plasmid_name": "R701-X19-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) G12V", "sequence-type": "addgene-full", "addgene_id": "159570", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159570.addgene-full.gb" }, @@ -108193,7 +136405,10 @@ "plasmid_name": "pcDNA5-FRT-GFP-mCherry-3pGW", "sequence-type": "depositor-full", "addgene_id": "53965", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2014.03.001", + "https://www.ncbi.nlm.nih.gov/pubmed/24656821" + ], "kit": null, "file": "data/addgene_plasmids/53965.depositor-full.gb" }, @@ -108202,7 +136417,10 @@ "plasmid_name": "pXL-CAG-mBirA272-NRX3b", "sequence-type": "depositor-full", "addgene_id": "43921", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0052823", + "https://www.ncbi.nlm.nih.gov/pubmed/23457442" + ], "kit": null, "file": "data/addgene_plasmids/43921.depositor-full.gb" }, @@ -108211,7 +136429,10 @@ "plasmid_name": "pDONR221_SLC35F4", "sequence-type": "addgene-full", "addgene_id": "132097", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132097.addgene-full.gb" }, @@ -108220,7 +136441,6 @@ "plasmid_name": "pLEX307-TMPRSS4-puro", "sequence-type": "addgene-full", "addgene_id": "158472", - "references": [], "kit": null, "file": "data/addgene_plasmids/158472.addgene-full.gb" }, @@ -108229,7 +136449,9 @@ "plasmid_name": "p3E-FRB-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82594", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82594.depositor-full.gb" }, @@ -108238,7 +136460,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-pFOGc::RfA-venus", "sequence-type": "addgene-full", "addgene_id": "186401", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186401.addgene-full.gb" }, @@ -108247,7 +136472,10 @@ "plasmid_name": "pDEST-CMV-N-Tandem-mCherry-EGFP", "sequence-type": "addgene-full", "addgene_id": "123216", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123216.addgene-full.gb" }, @@ -108256,7 +136484,10 @@ "plasmid_name": "pDONR-IAA7", "sequence-type": "depositor-full", "addgene_id": "83871", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83871.depositor-full.gb" }, @@ -108265,7 +136496,6 @@ "plasmid_name": "pENTR-R2L3-IRES-Zeo-pA", "sequence-type": "addgene-full", "addgene_id": "139530", - "references": [], "kit": null, "file": "data/addgene_plasmids/139530.addgene-full.gb" }, @@ -108274,7 +136504,10 @@ "plasmid_name": "MCAM-GFP", "sequence-type": "addgene-full", "addgene_id": "214475", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E23-06-0255", + "https://www.ncbi.nlm.nih.gov/pubmed/38117590" + ], "kit": null, "file": "data/addgene_plasmids/214475.addgene-full.gb" }, @@ -108283,7 +136516,6 @@ "plasmid_name": "pcDNA-SUN2 EGFP", "sequence-type": "addgene-full", "addgene_id": "187678", - "references": [], "kit": null, "file": "data/addgene_plasmids/187678.addgene-full.gb" }, @@ -108292,7 +136524,10 @@ "plasmid_name": "pAC155-pCR8-sgExpression", "sequence-type": "depositor-full", "addgene_id": "49045", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/49045.depositor-full.gb" }, @@ -108301,7 +136536,10 @@ "plasmid_name": "p416PGK1-OsCYP711A2(pYL770)", "sequence-type": "addgene-full", "addgene_id": "178301", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178301.addgene-full.gb" }, @@ -108310,7 +136548,10 @@ "plasmid_name": "His8:MBP-tev-Ile-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83392", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.14497", + "https://www.ncbi.nlm.nih.gov/pubmed/28277608" + ], "kit": null, "file": "data/addgene_plasmids/83392.addgene-full.gb" }, @@ -108319,7 +136560,10 @@ "plasmid_name": "pLVX-Flag-Pol\u00df(L301R/V303R)-IRES-puro", "sequence-type": "addgene-full", "addgene_id": "128658", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms6513", + "https://www.ncbi.nlm.nih.gov/pubmed/25423885" + ], "kit": null, "file": "data/addgene_plasmids/128658.addgene-full.gb" }, @@ -108328,7 +136572,10 @@ "plasmid_name": "pcDNA5FRT/TO-Ufd1-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113474", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113474.addgene-full.gb" }, @@ -108337,7 +136584,10 @@ "plasmid_name": "pSGE_712_Ubi-1-Trl_dCP", "sequence-type": "depositor-full", "addgene_id": "71159", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71159.depositor-full.gb" }, @@ -108346,7 +136596,10 @@ "plasmid_name": "pMEclecl14aP1gfp", "sequence-type": "addgene-full", "addgene_id": "90123", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90123.addgene-full.gb" }, @@ -108355,7 +136608,10 @@ "plasmid_name": "pDONR221-kcnma1a", "sequence-type": "addgene-full", "addgene_id": "164951", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.329", + "https://www.ncbi.nlm.nih.gov/pubmed/33728688" + ], "kit": null, "file": "data/addgene_plasmids/164951.addgene-full.gb" }, @@ -108364,7 +136620,10 @@ "plasmid_name": "pDONR221-SLC7A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161467", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161467.addgene-full.gb" }, @@ -108373,7 +136632,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP16", "sequence-type": "addgene-full", "addgene_id": "169389", - "references": [], "kit": null, "file": "data/addgene_plasmids/169389.addgene-full.gb" }, @@ -108382,7 +136640,10 @@ "plasmid_name": "GABPA_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176999", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176999.addgene-full.gb" }, @@ -108391,7 +136652,10 @@ "plasmid_name": "pCFJ2307 - [1-2] ENTR - Fluor - ce-tagRFP-T(1 intron, syntrons(3), NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159856", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159856.addgene-full.gb" }, @@ -108400,7 +136664,10 @@ "plasmid_name": "pE3c", "sequence-type": "depositor-full", "addgene_id": "17463", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17463.depositor-full.gb" }, @@ -108409,7 +136676,10 @@ "plasmid_name": "pGGEV_2_+nls-eGFP-HA-_+1_BK+", "sequence-type": "depositor-full", "addgene_id": "49312", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -108421,7 +136691,10 @@ "plasmid_name": "pAG426GPD-ccdB-DsRed", "sequence-type": "depositor-full", "addgene_id": "14372", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -108433,7 +136706,10 @@ "plasmid_name": "pRATIO4214", "sequence-type": "addgene-full", "addgene_id": "141314", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141314.addgene-full.gb" }, @@ -108442,7 +136718,10 @@ "plasmid_name": "pGC225", "sequence-type": "depositor-full", "addgene_id": "19636", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19636.depositor-full.gb" }, @@ -108451,7 +136730,10 @@ "plasmid_name": "pHAGE-PIK3CA-N345I", "sequence-type": "addgene-full", "addgene_id": "116516", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116516.addgene-full.gb" }, @@ -108460,7 +136742,10 @@ "plasmid_name": "pWOL-GW", "sequence-type": "addgene-full", "addgene_id": "209373", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209373.addgene-full.gb" }, @@ -108469,7 +136754,10 @@ "plasmid_name": "pDONR221_SLC5A10", "sequence-type": "addgene-full", "addgene_id": "132205", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132205.addgene-full.gb" }, @@ -108478,7 +136766,10 @@ "plasmid_name": "pDONR223-PRKCI", "sequence-type": "addgene-full", "addgene_id": "23828", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -108490,7 +136781,10 @@ "plasmid_name": "Flag-HA-USP45", "sequence-type": "addgene-full", "addgene_id": "22605", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22605.addgene-full.gb" }, @@ -108499,7 +136793,10 @@ "plasmid_name": "pDONR223_XIAP_WT", "sequence-type": "addgene-full", "addgene_id": "82170", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82170.addgene-full.gb" }, @@ -108508,7 +136805,10 @@ "plasmid_name": "pDONR223_PIK3IP1_p.G185E", "sequence-type": "addgene-full", "addgene_id": "81339", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -108520,7 +136820,10 @@ "plasmid_name": "pENTR-EF1adCas9VP64_T2A_MS2p65HSF1-IRESbsdpA", "sequence-type": "addgene-full", "addgene_id": "112922", - "references": [], + "references": [ + "https://doi.org/10.1186/s13059-018-1581-3", + "https://www.ncbi.nlm.nih.gov/pubmed/30477585" + ], "kit": null, "file": "data/addgene_plasmids/112922.addgene-full.gb" }, @@ -108529,7 +136832,10 @@ "plasmid_name": "pDONR223_SETD8_WT", "sequence-type": "addgene-full", "addgene_id": "82290", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82290.addgene-full.gb" }, @@ -108538,7 +136844,10 @@ "plasmid_name": "C231-E02: attB2r-NanoLuc-attB3", "sequence-type": "addgene-full", "addgene_id": "162901", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -108550,7 +136859,10 @@ "plasmid_name": "pDONR223 GABARAPL1 G116A", "sequence-type": "addgene-full", "addgene_id": "123084", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123084.addgene-full.gb" }, @@ -108559,7 +136871,10 @@ "plasmid_name": "pPB-cT3G-cERP2-FOS", "sequence-type": "addgene-full", "addgene_id": "192924", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192924.addgene-full.gb" }, @@ -108568,7 +136883,10 @@ "plasmid_name": "pDEST-FRT/T0-Flag-BRCA1", "sequence-type": "depositor-full", "addgene_id": "71117", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71117.depositor-full.gb" }, @@ -108577,7 +136895,10 @@ "plasmid_name": "pLX304-ARNT-d414", "sequence-type": "addgene-full", "addgene_id": "203579", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw1026", + "https://www.ncbi.nlm.nih.gov/pubmed/30872525" + ], "kit": null, "file": "data/addgene_plasmids/203579.addgene-full.gb" }, @@ -108586,7 +136907,10 @@ "plasmid_name": "TFORF3533", "sequence-type": "depositor-full", "addgene_id": "145009", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145009.depositor-full.gb" }, @@ -108595,7 +136919,10 @@ "plasmid_name": "pcDNA5 frt/to N-BioTAP-C-BRD4-NUT", "sequence-type": "addgene-full", "addgene_id": "171630", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1702086114", + "https://www.ncbi.nlm.nih.gov/pubmed/28484033" + ], "kit": null, "file": "data/addgene_plasmids/171630.addgene-full.gb" }, @@ -108604,7 +136931,6 @@ "plasmid_name": "R777-E031 Hs.CYTH2", "sequence-type": "depositor-full", "addgene_id": "70315", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -108616,7 +136942,10 @@ "plasmid_name": "pHAGE-PIK3CA-C901F", "sequence-type": "addgene-full", "addgene_id": "116459", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116459.addgene-full.gb" }, @@ -108625,7 +136954,6 @@ "plasmid_name": "pDEST26-hDHX58-Nluc", "sequence-type": "addgene-full", "addgene_id": "197626", - "references": [], "kit": null, "file": "data/addgene_plasmids/197626.addgene-full.gb" }, @@ -108634,7 +136962,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag1_nostop", "sequence-type": "addgene-full", "addgene_id": "153173", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153173.addgene-full.gb" }, @@ -108643,7 +136974,10 @@ "plasmid_name": "pCPP5910", "sequence-type": "addgene-full", "addgene_id": "128717", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.04.037", + "https://www.ncbi.nlm.nih.gov/pubmed/29742421" + ], "kit": null, "file": "data/addgene_plasmids/128717.addgene-full.gb" }, @@ -108652,7 +136986,10 @@ "plasmid_name": "pDONR221-ZNF646", "sequence-type": "depositor-full", "addgene_id": "101625", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101625.depositor-full.gb" }, @@ -108661,7 +136998,10 @@ "plasmid_name": "pDONR221_SLC25A52", "sequence-type": "addgene-full", "addgene_id": "132031", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132031.addgene-full.gb" }, @@ -108670,7 +137010,6 @@ "plasmid_name": "pDONR221-olig1", "sequence-type": "addgene-full", "addgene_id": "192744", - "references": [], "kit": null, "file": "data/addgene_plasmids/192744.addgene-full.gb" }, @@ -108679,7 +137018,10 @@ "plasmid_name": "SFRS17A-1", "sequence-type": "addgene-full", "addgene_id": "156011", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156011.addgene-full.gb" }, @@ -108688,7 +137030,10 @@ "plasmid_name": "pGC31", "sequence-type": "depositor-full", "addgene_id": "19678", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19678.depositor-full.gb" }, @@ -108697,7 +137042,10 @@ "plasmid_name": "pGWB433", "sequence-type": "depositor-full", "addgene_id": "74824", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74824.depositor-full.gb" }, @@ -108706,7 +137054,10 @@ "plasmid_name": "CYFIP2.mCherry", "sequence-type": "addgene-full", "addgene_id": "122052", - "references": [], + "references": [ + "https://doi.org/10.1038/tp.2014.16", + "https://www.ncbi.nlm.nih.gov/pubmed/24667445" + ], "kit": null, "file": "data/addgene_plasmids/122052.addgene-full.gb" }, @@ -108715,7 +137066,10 @@ "plasmid_name": "MAC_C_MGST3", "sequence-type": "addgene-full", "addgene_id": "111670", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111670.addgene-full.gb" }, @@ -108724,7 +137078,10 @@ "plasmid_name": "pGWT35S-KON168-MXMT", "sequence-type": "addgene-full", "addgene_id": "182727", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2017-0121", + "https://www.ncbi.nlm.nih.gov/pubmed/29661017" + ], "kit": null, "file": "data/addgene_plasmids/182727.addgene-full.gb" }, @@ -108733,7 +137090,10 @@ "plasmid_name": "pHAGE-CDH1", "sequence-type": "addgene-full", "addgene_id": "116722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116722.addgene-full.gb" }, @@ -108742,7 +137102,10 @@ "plasmid_name": "pTol2CG2-QUASM1:GFPNLS-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155123", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155123.addgene-full.gb" }, @@ -108751,7 +137114,6 @@ "plasmid_name": "IDG_CACNG4_OE_1", "sequence-type": "addgene-full", "addgene_id": "161653", - "references": [], "kit": null, "file": "data/addgene_plasmids/161653.addgene-full.gb" }, @@ -108760,7 +137122,9 @@ "plasmid_name": "pDEST mfap4:turquoise2", "sequence-type": "addgene-full", "addgene_id": "135218", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "file": "data/addgene_plasmids/135218.addgene-full.gb" }, @@ -108769,7 +137133,10 @@ "plasmid_name": "pDONR223_REG1B_p.A82T", "sequence-type": "addgene-full", "addgene_id": "81276", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -108781,7 +137148,6 @@ "plasmid_name": "pDEST26-his-hSFRP1", "sequence-type": "addgene-full", "addgene_id": "189539", - "references": [], "kit": null, "file": "data/addgene_plasmids/189539.addgene-full.gb" }, @@ -108790,7 +137156,10 @@ "plasmid_name": "pDONR223_KEAP1_p.P278S", "sequence-type": "addgene-full", "addgene_id": "82832", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82832.addgene-full.gb" }, @@ -108799,7 +137168,10 @@ "plasmid_name": "pDONR221 Rpf1", "sequence-type": "depositor-full", "addgene_id": "63771", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63771.depositor-full.gb" }, @@ -108808,7 +137180,6 @@ "plasmid_name": "LEMD3_BirA_Nterm", "sequence-type": "addgene-full", "addgene_id": "221518", - "references": [], "kit": null, "file": "data/addgene_plasmids/221518.addgene-full.gb" }, @@ -108817,7 +137188,10 @@ "plasmid_name": "pDONR223_DCAF8_p.E63K", "sequence-type": "addgene-full", "addgene_id": "82786", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82786.addgene-full.gb" }, @@ -108826,7 +137200,10 @@ "plasmid_name": "p35S_EVDm1", "sequence-type": "addgene-full", "addgene_id": "167121", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.220723.117", + "https://www.ncbi.nlm.nih.gov/pubmed/28784835" + ], "kit": null, "file": "data/addgene_plasmids/167121.addgene-full.gb" }, @@ -108835,7 +137212,10 @@ "plasmid_name": "pDEST-N2H-C2", "sequence-type": "addgene-full", "addgene_id": "125559", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11809-2", + "https://www.ncbi.nlm.nih.gov/pubmed/31467278" + ], "kit": null, "file": "data/addgene_plasmids/125559.addgene-full.gb" }, @@ -108844,7 +137224,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-Snaptag-RfA", "sequence-type": "addgene-full", "addgene_id": "186385", - "references": [], "kit": null, "file": "data/addgene_plasmids/186385.addgene-full.gb" }, @@ -108853,7 +137232,10 @@ "plasmid_name": "pDONR221-ZNF799", "sequence-type": "depositor-full", "addgene_id": "101514", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101514.depositor-full.gb" }, @@ -108862,7 +137244,10 @@ "plasmid_name": "pDONR-IAA20_no stop", "sequence-type": "depositor-full", "addgene_id": "83859", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83859.depositor-full.gb" }, @@ -108871,7 +137256,10 @@ "plasmid_name": "pDONR223_PPIAL4G_WT", "sequence-type": "addgene-full", "addgene_id": "81900", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -108883,7 +137271,10 @@ "plasmid_name": "pDONR221-SLC30A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161291", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161291.addgene-full.gb" }, @@ -108892,7 +137283,10 @@ "plasmid_name": "TFORF3004", "sequence-type": "addgene-full", "addgene_id": "144480", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144480.addgene-full.gb" }, @@ -108901,7 +137295,9 @@ "plasmid_name": "pMpGWB432", "sequence-type": "depositor-full", "addgene_id": "68697", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68697.depositor-full.gb" }, @@ -108910,7 +137306,10 @@ "plasmid_name": "TFORF3284", "sequence-type": "addgene-full", "addgene_id": "144760", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144760.addgene-full.gb" }, @@ -108919,7 +137318,10 @@ "plasmid_name": "pDONR221_SLC25A48", "sequence-type": "addgene-full", "addgene_id": "131995", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131995.addgene-full.gb" }, @@ -108928,7 +137330,10 @@ "plasmid_name": "pGGEV_4'_Linker", "sequence-type": "depositor-full", "addgene_id": "49290", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -108940,7 +137345,10 @@ "plasmid_name": "pGTQL1221YC", "sequence-type": "depositor-full", "addgene_id": "61705", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2009.04048.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19843313" + ], "kit": null, "file": "data/addgene_plasmids/61705.depositor-full.gb" }, @@ -108949,7 +137357,6 @@ "plasmid_name": "R777-E259 Hs.RASSF4", "sequence-type": "depositor-full", "addgene_id": "70543", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -108961,7 +137368,10 @@ "plasmid_name": "pDONR221-SLC25A34_STOP", "sequence-type": "addgene-full", "addgene_id": "161171", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161171.addgene-full.gb" }, @@ -108970,7 +137380,10 @@ "plasmid_name": "pLenti CRISPR V2 sgMTFMT_1", "sequence-type": "addgene-full", "addgene_id": "106318", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106318.addgene-full.gb" }, @@ -108979,7 +137392,10 @@ "plasmid_name": "pJW4.13", "sequence-type": "depositor-full", "addgene_id": "62869", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62869.depositor-full.gb" }, @@ -108988,7 +137404,10 @@ "plasmid_name": "pDONR223_XPO1_p.E571K", "sequence-type": "addgene-full", "addgene_id": "81554", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -109000,7 +137419,10 @@ "plasmid_name": "p2R3a-Tq2CFP-OcsT", "sequence-type": "depositor-full", "addgene_id": "71268", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71268.depositor-full.gb" }, @@ -109009,7 +137431,9 @@ "plasmid_name": "pDONR221-TFAM", "sequence-type": "addgene-full", "addgene_id": "166217", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166217.addgene-full.gb" }, @@ -109018,7 +137442,10 @@ "plasmid_name": "pPV-EF1a-2xNLS-Cse2-Cas6-Cas3-iCA", "sequence-type": "addgene-full", "addgene_id": "134923", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-13226-x", + "https://www.ncbi.nlm.nih.gov/pubmed/31811138" + ], "kit": null, "file": "data/addgene_plasmids/134923.addgene-full.gb" }, @@ -109027,7 +137454,10 @@ "plasmid_name": "pMH-SFB-RNF8", "sequence-type": "addgene-full", "addgene_id": "99396", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.09.041", + "https://www.ncbi.nlm.nih.gov/pubmed/18001825" + ], "kit": null, "file": "data/addgene_plasmids/99396.addgene-full.gb" }, @@ -109036,7 +137466,10 @@ "plasmid_name": "pLEX_305-C-dTAG", "sequence-type": "addgene-full", "addgene_id": "91798", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0021-8", + "https://www.ncbi.nlm.nih.gov/pubmed/29581585" + ], "kit": null, "file": "data/addgene_plasmids/91798.addgene-full.gb" }, @@ -109045,7 +137478,10 @@ "plasmid_name": "pTA7001-DEST", "sequence-type": "addgene-full", "addgene_id": "71745", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.110.171785", + "https://www.ncbi.nlm.nih.gov/pubmed/21343429" + ], "kit": null, "file": "data/addgene_plasmids/71745.addgene-full.gb" }, @@ -109054,7 +137490,10 @@ "plasmid_name": "TFORF3078", "sequence-type": "addgene-full", "addgene_id": "144554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144554.addgene-full.gb" }, @@ -109063,7 +137502,10 @@ "plasmid_name": "pMMACE DEST CMV PE2", "sequence-type": "addgene-full", "addgene_id": "206276", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206276.addgene-full.gb" }, @@ -109072,7 +137514,10 @@ "plasmid_name": "pDONR223_PPP2R1A_WT", "sequence-type": "addgene-full", "addgene_id": "81760", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -109096,7 +137541,10 @@ "plasmid_name": "pDONR221-SLC45A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161345", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161345.addgene-full.gb" }, @@ -109105,7 +137553,9 @@ "plasmid_name": "p3E-IRES-mTagBFP2-pA (JDW 1361)", "sequence-type": "addgene-full", "addgene_id": "224535", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224535.addgene-full.gb" }, @@ -109114,7 +137564,10 @@ "plasmid_name": "A3A-PBE", "sequence-type": "addgene-full", "addgene_id": "119768", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt.4261", + "https://www.ncbi.nlm.nih.gov/pubmed/30272679" + ], "kit": null, "file": "data/addgene_plasmids/119768.addgene-full.gb" }, @@ -109123,7 +137576,10 @@ "plasmid_name": "pEZY202", "sequence-type": "depositor-full", "addgene_id": "18705", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18705.depositor-full.gb" }, @@ -109132,7 +137588,10 @@ "plasmid_name": "pXN22-Dest", "sequence-type": "addgene-full", "addgene_id": "105085", - "references": [], + "references": [ + "https://doi.org/10.1002/0471142301.ns0527s41", + "https://www.ncbi.nlm.nih.gov/pubmed/18428659" + ], "kit": null, "file": "data/addgene_plasmids/105085.addgene-full.gb" }, @@ -109141,7 +137600,10 @@ "plasmid_name": "plenti-UbcP-IKZF3-3xHA-pGK-Pur", "sequence-type": "addgene-full", "addgene_id": "69053", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/69053.addgene-full.gb" }, @@ -109150,7 +137612,10 @@ "plasmid_name": "pDONR223_CYP3A5_p.D336N", "sequence-type": "addgene-full", "addgene_id": "81480", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -109162,7 +137627,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 S_nostop", "sequence-type": "addgene-full", "addgene_id": "168532", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168532.addgene-full.gb" }, @@ -109171,7 +137639,6 @@ "plasmid_name": "p663-UBC-V5-TurboID-V5-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158159", - "references": [], "kit": null, "file": "data/addgene_plasmids/158159.addgene-full.gb" }, @@ -109180,7 +137647,10 @@ "plasmid_name": "pHAGE-EGFR-A839V", "sequence-type": "addgene-full", "addgene_id": "116234", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116234.addgene-full.gb" }, @@ -109189,7 +137659,10 @@ "plasmid_name": "TFORF3424", "sequence-type": "addgene-full", "addgene_id": "144900", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144900.addgene-full.gb" }, @@ -109198,7 +137671,10 @@ "plasmid_name": "pAC149-pCR8-dCas9VP160", "sequence-type": "depositor-full", "addgene_id": "48221", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/48221.depositor-full.gb" }, @@ -109207,7 +137683,10 @@ "plasmid_name": "IA304: pMAGIC (R4-R3) NLS-Sa dCas9-NLS-VPR", "sequence-type": "addgene-full", "addgene_id": "121822", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121822.addgene-full.gb" }, @@ -109216,7 +137695,10 @@ "plasmid_name": "pEPYCdKN0002", "sequence-type": "addgene-full", "addgene_id": "196149", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196149.addgene-full.gb" }, @@ -109225,7 +137707,10 @@ "plasmid_name": "IY202: pMVP (L3-L2) APEX2 + polyA", "sequence-type": "addgene-full", "addgene_id": "121796", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121796.addgene-full.gb" }, @@ -109234,7 +137719,6 @@ "plasmid_name": "R777-E013 Hs.ARHGEF2", "sequence-type": "depositor-full", "addgene_id": "70297", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -109246,7 +137730,9 @@ "plasmid_name": "pPB-cT3G-cERP2-PRDM9", "sequence-type": "addgene-full", "addgene_id": "222565", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222565.addgene-full.gb" }, @@ -109255,7 +137741,10 @@ "plasmid_name": "pYPQ284-v2", "sequence-type": "addgene-full", "addgene_id": "138119", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138119.addgene-full.gb" }, @@ -109264,7 +137753,10 @@ "plasmid_name": "pLenti-GRET", "sequence-type": "addgene-full", "addgene_id": "158222", - "references": [], + "references": [ + "https://doi.org/10.1002/advs.202001467", + "https://www.ncbi.nlm.nih.gov/pubmed/33042758" + ], "kit": null, "file": "data/addgene_plasmids/158222.addgene-full.gb" }, @@ -109273,7 +137765,10 @@ "plasmid_name": "pME-nls-sfGFP", "sequence-type": "addgene-full", "addgene_id": "132973", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132973.addgene-full.gb" }, @@ -109282,7 +137777,6 @@ "plasmid_name": "PSMC3_miniTurbo_Nterm", "sequence-type": "addgene-full", "addgene_id": "221525", - "references": [], "kit": null, "file": "data/addgene_plasmids/221525.addgene-full.gb" }, @@ -109291,7 +137785,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep63", "sequence-type": "addgene-full", "addgene_id": "136861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136861.addgene-full.gb" }, @@ -109300,7 +137797,10 @@ "plasmid_name": "pBBR5pemIKpKan", "sequence-type": "addgene-full", "addgene_id": "129271", - "references": [], + "references": [ + "https://doi.org/10.1128/MRA.00769-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31488530" + ], "kit": null, "file": "data/addgene_plasmids/129271.addgene-full.gb" }, @@ -109309,7 +137809,6 @@ "plasmid_name": "pENTRY4_ WRKY28_1", "sequence-type": "addgene-full", "addgene_id": "126899", - "references": [], "kit": null, "file": "data/addgene_plasmids/126899.addgene-full.gb" }, @@ -109318,7 +137817,10 @@ "plasmid_name": "pDONR223-ZNF624", "sequence-type": "addgene-full", "addgene_id": "88065", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88065.addgene-full.gb" }, @@ -109327,7 +137829,10 @@ "plasmid_name": "pcDNA3_AVPR2-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194370", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194370.addgene-full.gb" }, @@ -109336,7 +137841,10 @@ "plasmid_name": "pHAGE-ERBB2-R226S", "sequence-type": "addgene-full", "addgene_id": "116346", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116346.addgene-full.gb" }, @@ -109345,7 +137853,10 @@ "plasmid_name": "pDONR221_SLC13A4", "sequence-type": "addgene-full", "addgene_id": "131933", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131933.addgene-full.gb" }, @@ -109354,7 +137865,10 @@ "plasmid_name": "TFORF2950", "sequence-type": "addgene-full", "addgene_id": "144426", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144426.addgene-full.gb" }, @@ -109363,7 +137877,10 @@ "plasmid_name": "actc1b-mKate2-ING2", "sequence-type": "addgene-full", "addgene_id": "109502", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109502.addgene-full.gb" }, @@ -109372,7 +137889,10 @@ "plasmid_name": "pBSWHhc-p53", "sequence-type": "addgene-full", "addgene_id": "133903", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/133903.addgene-full.gb" }, @@ -109381,7 +137901,10 @@ "plasmid_name": "pDONR221-SLC38A11_STOP", "sequence-type": "addgene-full", "addgene_id": "161237", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161237.addgene-full.gb" }, @@ -109390,7 +137913,10 @@ "plasmid_name": "pDONR223_CTCF_p.N568K", "sequence-type": "addgene-full", "addgene_id": "81612", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -109402,7 +137928,10 @@ "plasmid_name": "pGAPDH::sNluc1", "sequence-type": "addgene-full", "addgene_id": "187221", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2022.100298", + "https://www.ncbi.nlm.nih.gov/pubmed/36313809" + ], "kit": null, "file": "data/addgene_plasmids/187221.addgene-full.gb" }, @@ -109411,7 +137940,10 @@ "plasmid_name": "pLAMP1-mCherry", "sequence-type": "addgene-full", "addgene_id": "45147", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1437", + "https://www.ncbi.nlm.nih.gov/pubmed/20228815" + ], "kit": null, "file": "data/addgene_plasmids/45147.addgene-full.gb" }, @@ -109420,7 +137952,10 @@ "plasmid_name": "TFORF3545", "sequence-type": "depositor-full", "addgene_id": "145021", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145021.depositor-full.gb" }, @@ -109429,7 +137964,10 @@ "plasmid_name": "pDCC6", "sequence-type": "addgene-full", "addgene_id": "59985", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.114.014126", + "https://www.ncbi.nlm.nih.gov/pubmed/25236734" + ], "kit": null, "file": "data/addgene_plasmids/59985.addgene-full.gb" }, @@ -109438,7 +137976,10 @@ "plasmid_name": "pDONR223_PTEN_p.G129E", "sequence-type": "addgene-full", "addgene_id": "81689", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -109450,7 +137991,10 @@ "plasmid_name": "actc1b-mKate2-rab13", "sequence-type": "addgene-full", "addgene_id": "109599", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109599.addgene-full.gb" }, @@ -109459,7 +138003,10 @@ "plasmid_name": "pAG415GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14314", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -109471,7 +138018,10 @@ "plasmid_name": "pCM1.95", "sequence-type": "depositor-full", "addgene_id": "21381", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21381.depositor-full.gb" }, @@ -109480,7 +138030,10 @@ "plasmid_name": "p3E-rab22a", "sequence-type": "addgene-full", "addgene_id": "109679", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109679.addgene-full.gb" }, @@ -109489,7 +138042,10 @@ "plasmid_name": "pSLIK 3xFLAG-CSE1L zeo", "sequence-type": "addgene-full", "addgene_id": "192320", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192320.addgene-full.gb" }, @@ -109498,7 +138054,10 @@ "plasmid_name": "pDONR223_ARSI_p.P228L", "sequence-type": "addgene-full", "addgene_id": "81569", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -109510,7 +138069,10 @@ "plasmid_name": "pHWBF06exp", "sequence-type": "addgene-full", "addgene_id": "130831", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130831.addgene-full.gb" }, @@ -109519,7 +138081,10 @@ "plasmid_name": "pDONR221-EWSR1 Stop", "sequence-type": "depositor-full", "addgene_id": "84887", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/dds116", + "https://www.ncbi.nlm.nih.gov/pubmed/22454397" + ], "kit": null, "file": "data/addgene_plasmids/84887.depositor-full.gb" }, @@ -109528,7 +138093,10 @@ "plasmid_name": "pDONR223_ZNF597_WT", "sequence-type": "addgene-full", "addgene_id": "82894", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82894.addgene-full.gb" }, @@ -109537,7 +138105,10 @@ "plasmid_name": "pCM5.56", "sequence-type": "depositor-full", "addgene_id": "19379", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19379.depositor-full.gb" }, @@ -109546,7 +138117,10 @@ "plasmid_name": "TFORF3093", "sequence-type": "addgene-full", "addgene_id": "144569", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144569.addgene-full.gb" }, @@ -109555,7 +138129,10 @@ "plasmid_name": "pLenti6-AMPK alpha1 (1-312)", "sequence-type": "addgene-full", "addgene_id": "162131", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3328", + "https://www.ncbi.nlm.nih.gov/pubmed/26999735" + ], "kit": null, "file": "data/addgene_plasmids/162131.addgene-full.gb" }, @@ -109564,7 +138141,9 @@ "plasmid_name": "pME-TAEL (JDW 1324)", "sequence-type": "addgene-full", "addgene_id": "224508", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224508.addgene-full.gb" }, @@ -109573,7 +138152,10 @@ "plasmid_name": "pDONR221-SLC16A13_STOP", "sequence-type": "depositor-full", "addgene_id": "161041", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161041.depositor-full.gb" }, @@ -109594,7 +138176,10 @@ "plasmid_name": "pFRT_TO_FlagHA_PRKRA", "sequence-type": "addgene-full", "addgene_id": "106111", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106111.addgene-full.gb" }, @@ -109603,7 +138188,10 @@ "plasmid_name": "IO001: pMVP (R4-R3) eGFP", "sequence-type": "addgene-full", "addgene_id": "121730", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121730.addgene-full.gb" }, @@ -109612,7 +138200,10 @@ "plasmid_name": "pDONR221-SLC12A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161098", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161098.addgene-full.gb" }, @@ -109621,7 +138212,10 @@ "plasmid_name": "pDONR223_RIT1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82940", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82940.addgene-full.gb" }, @@ -109630,7 +138224,6 @@ "plasmid_name": "R777-E330 Hs.SPRY2-nostop", "sequence-type": "depositor-full", "addgene_id": "70614", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -109642,7 +138235,10 @@ "plasmid_name": "pHAGE-BRAF-V600R", "sequence-type": "addgene-full", "addgene_id": "116209", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116209.addgene-full.gb" }, @@ -109651,7 +138247,6 @@ "plasmid_name": "p663-UBC-TurboID-V5-GSK3B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158164", - "references": [], "kit": null, "file": "data/addgene_plasmids/158164.addgene-full.gb" }, @@ -109660,7 +138255,10 @@ "plasmid_name": "pMXs-hFOXH1", "sequence-type": "depositor-full", "addgene_id": "59183", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms4678", + "https://www.ncbi.nlm.nih.gov/pubmed/24759836" + ], "kit": null, "file": "data/addgene_plasmids/59183.depositor-full.gb" }, @@ -109669,7 +138267,10 @@ "plasmid_name": "TFORF3213", "sequence-type": "addgene-full", "addgene_id": "144689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144689.addgene-full.gb" }, @@ -109678,7 +138279,10 @@ "plasmid_name": "pENTR1A_mmFbxw7a (closed)", "sequence-type": "addgene-full", "addgene_id": "160101", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160101.addgene-full.gb" }, @@ -109687,7 +138291,9 @@ "plasmid_name": "pDEST17-His10-Smt3-DDX5\u0394IDR(kf)-SNAP", "sequence-type": "addgene-full", "addgene_id": "166151", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166151.addgene-full.gb" }, @@ -109696,7 +138302,10 @@ "plasmid_name": "pHAGE-EGFR-R108K", "sequence-type": "addgene-full", "addgene_id": "116292", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116292.addgene-full.gb" }, @@ -109705,7 +138314,10 @@ "plasmid_name": "pENTR-AtTAS1c-B/c", "sequence-type": "depositor-full", "addgene_id": "51774", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.113.234989", + "https://www.ncbi.nlm.nih.gov/pubmed/24647477" + ], "kit": null, "file": "data/addgene_plasmids/51774.depositor-full.gb" }, @@ -109714,7 +138326,6 @@ "plasmid_name": "R777-E089 Hs.FGFR4", "sequence-type": "depositor-full", "addgene_id": "70373", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -109726,7 +138337,10 @@ "plasmid_name": "pAC1823_pCR8-RBFOX1N-dCasRx-C", "sequence-type": "addgene-full", "addgene_id": "118657", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118657.addgene-full.gb" }, @@ -109735,7 +138349,10 @@ "plasmid_name": "TFORF3136", "sequence-type": "addgene-full", "addgene_id": "144612", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144612.addgene-full.gb" }, @@ -109744,7 +138361,10 @@ "plasmid_name": "p3E-rab4a-CA", "sequence-type": "addgene-full", "addgene_id": "109736", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109736.addgene-full.gb" }, @@ -109753,7 +138373,10 @@ "plasmid_name": "pSGE_763_4xUAS_UPS_hkCP", "sequence-type": "depositor-full", "addgene_id": "71171", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71171.depositor-full.gb" }, @@ -109762,7 +138385,10 @@ "plasmid_name": "pDONR223_CNBD1_p.A426S", "sequence-type": "addgene-full", "addgene_id": "81426", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -109774,7 +138400,10 @@ "plasmid_name": "pcDNA3.2 YFP", "sequence-type": "addgene-full", "addgene_id": "84910", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09320", + "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + ], "kit": null, "file": "data/addgene_plasmids/84910.addgene-full.gb" }, @@ -109783,7 +138412,10 @@ "plasmid_name": "p{3P3-dsRed::FRT-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182177", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182177.addgene-full.gb" }, @@ -109792,7 +138424,10 @@ "plasmid_name": "pDONR223_C13orf37_WT", "sequence-type": "addgene-full", "addgene_id": "81872", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -109804,7 +138439,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MARK4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189884", - "references": [], "kit": null, "file": "data/addgene_plasmids/189884.addgene-full.gb" }, @@ -109813,7 +138447,10 @@ "plasmid_name": "pYPQ287-RVR", "sequence-type": "addgene-full", "addgene_id": "138124", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138124.addgene-full.gb" }, @@ -109822,7 +138459,9 @@ "plasmid_name": "pPB-cT3G-cERP2-YTHDC2", "sequence-type": "addgene-full", "addgene_id": "222558", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222558.addgene-full.gb" }, @@ -109831,7 +138470,10 @@ "plasmid_name": "pHAGE-BRAF-L245F", "sequence-type": "addgene-full", "addgene_id": "116172", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116172.addgene-full.gb" }, @@ -109840,7 +138482,10 @@ "plasmid_name": "pHAGE-MAP2K4", "sequence-type": "addgene-full", "addgene_id": "116758", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116758.addgene-full.gb" }, @@ -109849,7 +138494,10 @@ "plasmid_name": "pENTR-R4R3-2xmEGFP-N", "sequence-type": "depositor-full", "addgene_id": "113747", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -109861,7 +138509,10 @@ "plasmid_name": "pYPQ265H", "sequence-type": "addgene-full", "addgene_id": "149554", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2020.100101", + "https://www.ncbi.nlm.nih.gov/pubmed/33898973" + ], "kit": null, "file": "data/addgene_plasmids/149554.addgene-full.gb" }, @@ -109870,7 +138521,10 @@ "plasmid_name": "pLentiPGK Blast DEST JNKKTRmRuby2", "sequence-type": "addgene-full", "addgene_id": "59154", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59154.addgene-full.gb" }, @@ -109879,7 +138533,6 @@ "plasmid_name": "IDG_TMC3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161629", - "references": [], "kit": null, "file": "data/addgene_plasmids/161629.addgene-full.gb" }, @@ -109888,7 +138541,6 @@ "plasmid_name": "p663-UBC-V5-dsRed_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135262", - "references": [], "kit": null, "file": "data/addgene_plasmids/135262.addgene-full.gb" }, @@ -109897,7 +138549,10 @@ "plasmid_name": "pDEST40-2XFL-Src-Y530EEI", "sequence-type": "addgene-full", "addgene_id": "140323", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140323.addgene-full.gb" }, @@ -109906,7 +138561,10 @@ "plasmid_name": "pTW102", "sequence-type": "addgene-full", "addgene_id": "115945", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115945.addgene-full.gb" }, @@ -109915,7 +138573,10 @@ "plasmid_name": "pBP-split-intein-Gal4[21-881]-C-int", "sequence-type": "addgene-full", "addgene_id": "199202", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2304730120", + "https://www.ncbi.nlm.nih.gov/pubmed/37276389" + ], "kit": null, "file": "data/addgene_plasmids/199202.addgene-full.gb" }, @@ -109924,7 +138585,10 @@ "plasmid_name": "pCAG/ATP10A(E203Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209246", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209246.addgene-full.gb" }, @@ -109933,7 +138597,10 @@ "plasmid_name": "pDEST_CMV_N_Flag_BIRC6", "sequence-type": "addgene-full", "addgene_id": "197973", - "references": [], + "references": [ + "https://doi.org/10.1126/science.ade5750", + "https://www.ncbi.nlm.nih.gov/pubmed/36758104" + ], "kit": null, "file": "data/addgene_plasmids/197973.addgene-full.gb" }, @@ -109942,7 +138609,10 @@ "plasmid_name": "pSC50", "sequence-type": "addgene-full", "addgene_id": "104824", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104824.addgene-full.gb" }, @@ -109951,7 +138621,10 @@ "plasmid_name": "scAAV-sgRNA-GFP", "sequence-type": "addgene-full", "addgene_id": "177935", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-021-00677-0", + "https://www.ncbi.nlm.nih.gov/pubmed/35288718" + ], "kit": null, "file": "data/addgene_plasmids/177935.addgene-full.gb" }, @@ -109960,7 +138633,10 @@ "plasmid_name": "pHAGE-KRAS-G12D", "sequence-type": "addgene-full", "addgene_id": "116423", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116423.addgene-full.gb" }, @@ -109969,7 +138645,10 @@ "plasmid_name": "pYPQ-NF1-L1-dSpRY", "sequence-type": "addgene-full", "addgene_id": "177681", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.202100571", + "https://www.ncbi.nlm.nih.gov/pubmed/35377968" + ], "kit": null, "file": "data/addgene_plasmids/177681.addgene-full.gb" }, @@ -109978,7 +138657,10 @@ "plasmid_name": "pDONR221-SLC9A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161388", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161388.depositor-full.gb" }, @@ -109987,7 +138669,6 @@ "plasmid_name": "pAG426GAL-HCoV-OC43_3CL", "sequence-type": "addgene-full", "addgene_id": "203503", - "references": [], "kit": null, "file": "data/addgene_plasmids/203503.addgene-full.gb" }, @@ -109996,7 +138677,10 @@ "plasmid_name": "pRU53", "sequence-type": "addgene-full", "addgene_id": "167679", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167679.addgene-full.gb" }, @@ -110005,7 +138689,10 @@ "plasmid_name": "pDONR223_IER3_p.A155T", "sequence-type": "addgene-full", "addgene_id": "81297", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -110017,7 +138704,9 @@ "plasmid_name": "pMpGWB218", "sequence-type": "depositor-full", "addgene_id": "68609", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68609.depositor-full.gb" }, @@ -110026,7 +138715,6 @@ "plasmid_name": "pENTR_Hu_HEC1(WT)", "sequence-type": "addgene-full", "addgene_id": "136350", - "references": [], "kit": null, "file": "data/addgene_plasmids/136350.addgene-full.gb" }, @@ -110035,7 +138723,10 @@ "plasmid_name": "MAC_N_RAB11A", "sequence-type": "addgene-full", "addgene_id": "111691", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111691.addgene-full.gb" }, @@ -110044,7 +138735,10 @@ "plasmid_name": "pDL69", "sequence-type": "addgene-full", "addgene_id": "175905", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175905.addgene-full.gb" }, @@ -110053,7 +138747,10 @@ "plasmid_name": "pHL-EF1a-SphcCas9-iP-A", "sequence-type": "depositor-full", "addgene_id": "60599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.013", + "https://www.ncbi.nlm.nih.gov/pubmed/25434822" + ], "kit": null, "file": "data/addgene_plasmids/60599.depositor-full.gb" }, @@ -110062,7 +138759,10 @@ "plasmid_name": "Tol2-lyzC-Gal4-Vp16-Crys-CFP", "sequence-type": "addgene-full", "addgene_id": "97144", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.01.058", + "https://www.ncbi.nlm.nih.gov/pubmed/29444433" + ], "kit": null, "file": "data/addgene_plasmids/97144.addgene-full.gb" }, @@ -110071,7 +138771,6 @@ "plasmid_name": "EV-D68 2A protease; no tag, low expression levels", "sequence-type": "addgene-full", "addgene_id": "204805", - "references": [], "kit": null, "file": "data/addgene_plasmids/204805.addgene-full.gb" }, @@ -110080,7 +138779,10 @@ "plasmid_name": "pYPQ262F-ABE8e", "sequence-type": "addgene-full", "addgene_id": "199179", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad347", + "https://www.ncbi.nlm.nih.gov/pubmed/37315207" + ], "kit": null, "file": "data/addgene_plasmids/199179.addgene-full.gb" }, @@ -110089,7 +138791,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RSKR_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170607", - "references": [], "kit": null, "file": "data/addgene_plasmids/170607.addgene-full.gb" }, @@ -110098,7 +138799,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_R38A_E39A", "sequence-type": "depositor-full", "addgene_id": "65664", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65664.depositor-full.gb" }, @@ -110107,7 +138811,9 @@ "plasmid_name": "p5E-CMVmin", "sequence-type": "depositor-full", "addgene_id": "80802", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80802.depositor-full.gb" }, @@ -110116,7 +138822,10 @@ "plasmid_name": "pGFP-Rab8A[Q67L]", "sequence-type": "addgene-full", "addgene_id": "24900", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.053", + "https://www.ncbi.nlm.nih.gov/pubmed/17574030" + ], "kit": null, "file": "data/addgene_plasmids/24900.addgene-full.gb" }, @@ -110125,7 +138834,10 @@ "plasmid_name": "TFORF3521", "sequence-type": "depositor-full", "addgene_id": "144997", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144997.depositor-full.gb" }, @@ -110134,7 +138846,10 @@ "plasmid_name": "MAC_C_IGF1R", "sequence-type": "addgene-full", "addgene_id": "187770", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187770.addgene-full.gb" }, @@ -110143,7 +138858,10 @@ "plasmid_name": "pDONR223_OR2T33_p.R120S", "sequence-type": "addgene-full", "addgene_id": "81343", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -110155,7 +138873,9 @@ "plasmid_name": "pPtGG-1", "sequence-type": "depositor-full", "addgene_id": "89990", - "references": [], + "references": [ + "https://doi.org/10.7287/peerj.preprints.2907v1" + ], "kit": null, "file": "data/addgene_plasmids/89990.depositor-full.gb" }, @@ -110164,7 +138884,10 @@ "plasmid_name": "pDONR221_EGFP", "sequence-type": "addgene-full", "addgene_id": "25899", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1638", + "https://www.ncbi.nlm.nih.gov/pubmed/21706014" + ], "kit": null, "file": "data/addgene_plasmids/25899.addgene-full.gb" }, @@ -110173,7 +138896,10 @@ "plasmid_name": "pYPQ233 (dLbCpf1-SRDX)", "sequence-type": "addgene-full", "addgene_id": "86211", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "file": "data/addgene_plasmids/86211.addgene-full.gb" }, @@ -110182,7 +138908,10 @@ "plasmid_name": "pMXs-OLIG2", "sequence-type": "addgene-full", "addgene_id": "32933", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2011.07.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21852222" + ], "kit": null, "file": "data/addgene_plasmids/32933.addgene-full.gb" }, @@ -110191,7 +138920,10 @@ "plasmid_name": "pDONR-P2rP4", "sequence-type": "addgene-full", "addgene_id": "141015", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141015.addgene-full.gb" }, @@ -110200,7 +138932,10 @@ "plasmid_name": "pHAGE-PTEN-C136F", "sequence-type": "addgene-full", "addgene_id": "116617", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116617.addgene-full.gb" }, @@ -110209,7 +138944,10 @@ "plasmid_name": "pENTR221-EF1.Pro", "sequence-type": "addgene-full", "addgene_id": "79488", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79488.addgene-full.gb" }, @@ -110218,7 +138956,10 @@ "plasmid_name": "pcDNA5FRT/TO-Npl4-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113495", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113495.addgene-full.gb" }, @@ -110227,7 +138968,10 @@ "plasmid_name": "pDONR223-MAP2K1", "sequence-type": "addgene-full", "addgene_id": "23406", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -110239,7 +138983,10 @@ "plasmid_name": "pHAGE-eGFP-OPTN E50K", "sequence-type": "addgene-full", "addgene_id": "175765", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175765.addgene-full.gb" }, @@ -110248,7 +138995,6 @@ "plasmid_name": "pCM1.112", "sequence-type": "depositor-full", "addgene_id": "19599", - "references": [], "kit": null, "file": "data/addgene_plasmids/19599.depositor-full.gb" }, @@ -110257,7 +139003,6 @@ "plasmid_name": "pcDNA3.1-Renilla-ccdB", "sequence-type": "addgene-full", "addgene_id": "87068", - "references": [], "kit": null, "file": "data/addgene_plasmids/87068.addgene-full.gb" }, @@ -110266,7 +139011,10 @@ "plasmid_name": "pT2-cryR;clecl14aP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90159", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90159.addgene-full.gb" }, @@ -110275,7 +139023,9 @@ "plasmid_name": "pFLIP30", "sequence-type": "depositor-full", "addgene_id": "65499", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65499.depositor-full.gb" }, @@ -110284,7 +139034,6 @@ "plasmid_name": "pProk2.Cre.T2A.mCherry", "sequence-type": "addgene-full", "addgene_id": "169013", - "references": [], "kit": null, "file": "data/addgene_plasmids/169013.addgene-full.gb" }, @@ -110293,7 +139042,10 @@ "plasmid_name": "pDONR221_SLC27A5", "sequence-type": "addgene-full", "addgene_id": "132104", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132104.addgene-full.gb" }, @@ -110302,7 +139054,10 @@ "plasmid_name": "pWS1859", "sequence-type": "addgene-full", "addgene_id": "123065", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123065.addgene-full.gb" }, @@ -110311,7 +139066,10 @@ "plasmid_name": "pYPQ166", "sequence-type": "addgene-full", "addgene_id": "109328", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12982", + "https://www.ncbi.nlm.nih.gov/pubmed/29972722" + ], "kit": null, "file": "data/addgene_plasmids/109328.addgene-full.gb" }, @@ -110320,7 +139078,10 @@ "plasmid_name": "pTripz NEO DEST", "sequence-type": "addgene-full", "addgene_id": "209072", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-18-0389", + "https://www.ncbi.nlm.nih.gov/pubmed/30373918" + ], "kit": null, "file": "data/addgene_plasmids/209072.addgene-full.gb" }, @@ -110329,7 +139090,10 @@ "plasmid_name": "pINDgw RFA-V5-EcoDam", "sequence-type": "depositor-full", "addgene_id": "59204", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "file": "data/addgene_plasmids/59204.depositor-full.gb" }, @@ -110338,7 +139102,10 @@ "plasmid_name": "pDONR223_SENP6_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83008", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83008.addgene-full.gb" }, @@ -110347,7 +139114,9 @@ "plasmid_name": "pMpGWB319", "sequence-type": "depositor-full", "addgene_id": "68647", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68647.depositor-full.gb" }, @@ -110356,7 +139125,10 @@ "plasmid_name": "pcDNA-DEST47 PINK1 C-GFP", "sequence-type": "addgene-full", "addgene_id": "13316", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0500617102", + "https://www.ncbi.nlm.nih.gov/pubmed/15824318" + ], "kit": null, "file": "data/addgene_plasmids/13316.addgene-full.gb" }, @@ -110365,7 +139137,6 @@ "plasmid_name": "pAG416-GAL-TDP-43-N267S", "sequence-type": "addgene-full", "addgene_id": "181720", - "references": [], "kit": null, "file": "data/addgene_plasmids/181720.addgene-full.gb" }, @@ -110374,7 +139145,10 @@ "plasmid_name": "pAG414GPD-LjCYP722C(pYL795)", "sequence-type": "addgene-full", "addgene_id": "178292", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178292.addgene-full.gb" }, @@ -110383,7 +139157,6 @@ "plasmid_name": "R777-E309 Hs.SHC2", "sequence-type": "depositor-full", "addgene_id": "70593", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -110395,7 +139168,10 @@ "plasmid_name": "pMDJ10 - pEXP[Peft-3 | tagBFP2 (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159798", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159798.addgene-full.gb" }, @@ -110404,7 +139180,10 @@ "plasmid_name": "pAG416GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14220", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -110416,7 +139195,10 @@ "plasmid_name": "pDONR223_BAX_WT", "sequence-type": "addgene-full", "addgene_id": "82191", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82191.addgene-full.gb" }, @@ -110425,7 +139207,10 @@ "plasmid_name": "pHAGE FL NAP1 STOP C' EGFP IRES Blast", "sequence-type": "addgene-full", "addgene_id": "179102", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.202303082", + "https://www.ncbi.nlm.nih.gov/pubmed/38059900" + ], "kit": null, "file": "data/addgene_plasmids/179102.addgene-full.gb" }, @@ -110434,7 +139219,10 @@ "plasmid_name": "pHAGE-NFE2L2", "sequence-type": "addgene-full", "addgene_id": "116765", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116765.addgene-full.gb" }, @@ -110443,7 +139231,10 @@ "plasmid_name": "pAG425GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14177", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -110455,7 +139246,10 @@ "plasmid_name": "pCW57.1 Ex9 mut WT1", "sequence-type": "addgene-full", "addgene_id": "217646", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "file": "data/addgene_plasmids/217646.addgene-full.gb" }, @@ -110464,7 +139258,10 @@ "plasmid_name": "pCR8/GW_TOPO_Cdk12_Nterm_FlagHa", "sequence-type": "addgene-full", "addgene_id": "127177", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0758-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30487607" + ], "kit": null, "file": "data/addgene_plasmids/127177.addgene-full.gb" }, @@ -110473,7 +139270,9 @@ "plasmid_name": "bactin:GFP-LAP2b", "sequence-type": "addgene-full", "addgene_id": "105980", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30120238" + ], "kit": null, "file": "data/addgene_plasmids/105980.addgene-full.gb" }, @@ -110482,7 +139281,10 @@ "plasmid_name": "pGWB601NL3F10H", "sequence-type": "addgene-full", "addgene_id": "141287", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-019-0454-4", + "https://www.ncbi.nlm.nih.gov/pubmed/31316580" + ], "kit": null, "file": "data/addgene_plasmids/141287.addgene-full.gb" }, @@ -110491,7 +139293,10 @@ "plasmid_name": "pHAGE-PIK3CA-E545K", "sequence-type": "addgene-full", "addgene_id": "116485", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116485.addgene-full.gb" }, @@ -110500,7 +139305,10 @@ "plasmid_name": "pDEST17-DXO", "sequence-type": "addgene-full", "addgene_id": "177993", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "file": "data/addgene_plasmids/177993.addgene-full.gb" }, @@ -110509,7 +139317,10 @@ "plasmid_name": "CH192", "sequence-type": "addgene-full", "addgene_id": "113607", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113607.addgene-full.gb" }, @@ -110518,7 +139329,10 @@ "plasmid_name": "pSC45", "sequence-type": "addgene-full", "addgene_id": "104819", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104819.addgene-full.gb" }, @@ -110527,7 +139341,10 @@ "plasmid_name": "pLentiPGK Puro DEST PKAKTRClover", "sequence-type": "depositor-full", "addgene_id": "59153", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.04.039", + "https://www.ncbi.nlm.nih.gov/pubmed/24949979" + ], "kit": null, "file": "data/addgene_plasmids/59153.depositor-full.gb" }, @@ -110536,7 +139353,10 @@ "plasmid_name": "pAG415GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14410", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -110548,7 +139368,10 @@ "plasmid_name": "PE_21: Para_tet_eG::sfYFP", "sequence-type": "addgene-full", "addgene_id": "104882", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104882.addgene-full.gb" }, @@ -110557,7 +139380,10 @@ "plasmid_name": "pLenti-Zyxin-G (aa1-372)-EGFP", "sequence-type": "addgene-full", "addgene_id": "187699", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E11-12-1057", + "https://www.ncbi.nlm.nih.gov/pubmed/22456508" + ], "kit": null, "file": "data/addgene_plasmids/187699.addgene-full.gb" }, @@ -110566,7 +139392,6 @@ "plasmid_name": "R777-E155 Hs.PDGFRA", "sequence-type": "depositor-full", "addgene_id": "70439", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -110578,7 +139403,10 @@ "plasmid_name": "pcDNA5-FRT/TO-N-mEGFP-PARP15", "sequence-type": "addgene-full", "addgene_id": "178000", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "file": "data/addgene_plasmids/178000.addgene-full.gb" }, @@ -110587,7 +139415,10 @@ "plasmid_name": "pDONR221-Phelo", "sequence-type": "depositor-full", "addgene_id": "48995", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2180-9-90", + "https://www.ncbi.nlm.nih.gov/pubmed/19432966" + ], "kit": null, "file": "data/addgene_plasmids/48995.depositor-full.gb" }, @@ -110596,7 +139427,10 @@ "plasmid_name": "C122-E10: mCherry", "sequence-type": "addgene-full", "addgene_id": "162892", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -110608,7 +139442,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term PSPC1", "sequence-type": "addgene-full", "addgene_id": "187579", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187579.addgene-full.gb" }, @@ -110617,7 +139454,10 @@ "plasmid_name": "PB-CA", "sequence-type": "depositor-full", "addgene_id": "20960", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "file": "data/addgene_plasmids/20960.depositor-full.gb" }, @@ -110626,7 +139466,10 @@ "plasmid_name": "pDEST-CMV GFP-GABARAPL1 WT", "sequence-type": "addgene-full", "addgene_id": "123117", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123117.addgene-full.gb" }, @@ -110635,7 +139478,10 @@ "plasmid_name": "pDONR221_SLC34A3", "sequence-type": "addgene-full", "addgene_id": "132076", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132076.addgene-full.gb" }, @@ -110644,7 +139490,10 @@ "plasmid_name": "GRB2-V5", "sequence-type": "addgene-full", "addgene_id": "139631", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139631.addgene-full.gb" }, @@ -110653,7 +139502,10 @@ "plasmid_name": "pZA15", "sequence-type": "addgene-full", "addgene_id": "158493", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158493.addgene-full.gb" }, @@ -110662,7 +139514,10 @@ "plasmid_name": "pLSLGUS", "sequence-type": "depositor-full", "addgene_id": "51517", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51517.depositor-full.gb" }, @@ -110671,7 +139526,10 @@ "plasmid_name": "pENTR-2B-Nkx2-5YRD Y-A", "sequence-type": "addgene-full", "addgene_id": "98611", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98611.addgene-full.gb" }, @@ -110680,7 +139538,10 @@ "plasmid_name": "PDE9A_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176945", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176945.addgene-full.gb" }, @@ -110689,7 +139550,10 @@ "plasmid_name": "pDONR221_SLC6A1", "sequence-type": "addgene-full", "addgene_id": "132242", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132242.addgene-full.gb" }, @@ -110698,7 +139562,10 @@ "plasmid_name": "pVenusNfN", "sequence-type": "addgene-full", "addgene_id": "128564", - "references": [], + "references": [ + "https://doi.org/10.1177/1087057116659438", + "https://www.ncbi.nlm.nih.gov/pubmed/27455993" + ], "kit": null, "file": "data/addgene_plasmids/128564.addgene-full.gb" }, @@ -110707,7 +139574,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-7", "sequence-type": "depositor-full", "addgene_id": "46694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46694.depositor-full.gb" }, @@ -110716,7 +139586,10 @@ "plasmid_name": "pDONR221-ZNF749", "sequence-type": "addgene-full", "addgene_id": "101460", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101460.addgene-full.gb" }, @@ -110725,7 +139598,10 @@ "plasmid_name": "pJRA99", "sequence-type": "addgene-full", "addgene_id": "209334", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209334.addgene-full.gb" }, @@ -110734,7 +139610,10 @@ "plasmid_name": "pENTR-R4R3-3xmEGFP-N", "sequence-type": "addgene-full", "addgene_id": "113748", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -110746,7 +139625,10 @@ "plasmid_name": "pInducer20_SLC38A2_wt", "sequence-type": "addgene-full", "addgene_id": "156182", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0959", + "https://www.ncbi.nlm.nih.gov/pubmed/32341021" + ], "kit": null, "file": "data/addgene_plasmids/156182.addgene-full.gb" }, @@ -110755,7 +139637,10 @@ "plasmid_name": "pUC-DEST-cjBLIMP1-Venus-HygTK", "sequence-type": "addgene-full", "addgene_id": "141028", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141028.addgene-full.gb" }, @@ -110764,7 +139649,6 @@ "plasmid_name": "TCF4 - P381L in pENTR", "sequence-type": "addgene-full", "addgene_id": "216570", - "references": [], "kit": null, "file": "data/addgene_plasmids/216570.addgene-full.gb" }, @@ -110773,7 +139657,10 @@ "plasmid_name": "pAG306GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14139", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -110785,7 +139672,10 @@ "plasmid_name": "pDEST-Myc-FBW7 WD40 (All deleted)", "sequence-type": "addgene-full", "addgene_id": "197455", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "file": "data/addgene_plasmids/197455.addgene-full.gb" }, @@ -110794,7 +139684,10 @@ "plasmid_name": "pENTR223-BBLF2/3", "sequence-type": "addgene-full", "addgene_id": "195831", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195831.addgene-full.gb" }, @@ -110803,7 +139696,10 @@ "plasmid_name": "pHAGE-FLAG-APEX2-LGALS8", "sequence-type": "addgene-full", "addgene_id": "175758", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175758.addgene-full.gb" }, @@ -110812,7 +139708,10 @@ "plasmid_name": "pENTR223-BDLF4", "sequence-type": "addgene-full", "addgene_id": "195785", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195785.addgene-full.gb" }, @@ -110821,7 +139720,10 @@ "plasmid_name": "C512-E29: attB5r-mKate2-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162946", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -110833,7 +139735,10 @@ "plasmid_name": "pDONR221-SLC45A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161420", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161420.addgene-full.gb" }, @@ -110842,7 +139747,10 @@ "plasmid_name": "Flag-HA-BAP1", "sequence-type": "addgene-full", "addgene_id": "22539", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22539.addgene-full.gb" }, @@ -110863,7 +139771,10 @@ "plasmid_name": "pT2-cryR;nrp1bP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90164", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90164.addgene-full.gb" }, @@ -110872,7 +139783,10 @@ "plasmid_name": "pDestTol2pA ins:TDimer mVenus", "sequence-type": "addgene-full", "addgene_id": "210520", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.adi8317", + "https://www.ncbi.nlm.nih.gov/pubmed/37792934" + ], "kit": null, "file": "data/addgene_plasmids/210520.addgene-full.gb" }, @@ -110881,7 +139795,10 @@ "plasmid_name": "pDONR221_SLC29A2", "sequence-type": "addgene-full", "addgene_id": "132139", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132139.addgene-full.gb" }, @@ -110890,7 +139807,10 @@ "plasmid_name": "pWS1837", "sequence-type": "addgene-full", "addgene_id": "123058", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123058.addgene-full.gb" }, @@ -110899,7 +139819,10 @@ "plasmid_name": "pMuLE_ENTR_TOP-NLuc1.1_L5-L4", "sequence-type": "addgene-full", "addgene_id": "113867", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "file": "data/addgene_plasmids/113867.addgene-full.gb" }, @@ -110908,7 +139831,10 @@ "plasmid_name": "pGC49", "sequence-type": "depositor-full", "addgene_id": "19680", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19680.depositor-full.gb" }, @@ -110917,7 +139843,10 @@ "plasmid_name": "pHAGE-PIK3CB-D1067Y", "sequence-type": "addgene-full", "addgene_id": "116551", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116551.addgene-full.gb" }, @@ -110926,7 +139855,6 @@ "plasmid_name": "R777-E193 Hs.PRKAA2", "sequence-type": "depositor-full", "addgene_id": "70477", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -110938,7 +139866,6 @@ "plasmid_name": "pAG416GAL10-POWV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203471", - "references": [], "kit": null, "file": "data/addgene_plasmids/203471.addgene-full.gb" }, @@ -110947,7 +139874,10 @@ "plasmid_name": "pMDJ112 - pEXP(HygroR, 5605)[Phsp-16.41 | eFlp recombinase (PATCs) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159811", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159811.addgene-full.gb" }, @@ -110956,7 +139886,10 @@ "plasmid_name": "pHAGE-TGFB1-G202E", "sequence-type": "addgene-full", "addgene_id": "116695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116695.addgene-full.gb" }, @@ -110965,7 +139898,10 @@ "plasmid_name": "pDONR221-SLC44A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161404", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161404.addgene-full.gb" }, @@ -110974,7 +139910,10 @@ "plasmid_name": "pT2-cryR;clec14aCE1-basEgfp", "sequence-type": "addgene-full", "addgene_id": "90140", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90140.addgene-full.gb" }, @@ -110995,7 +139934,10 @@ "plasmid_name": "pDONR223_BIRC2_WT", "sequence-type": "addgene-full", "addgene_id": "82188", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82188.addgene-full.gb" }, @@ -111004,7 +139946,10 @@ "plasmid_name": "pDONR221-SLC25A18_STOP", "sequence-type": "depositor-full", "addgene_id": "161169", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161169.depositor-full.gb" }, @@ -111013,7 +139958,10 @@ "plasmid_name": "tetO-ETS2", "sequence-type": "addgene-full", "addgene_id": "170685", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170685.addgene-full.gb" }, @@ -111022,7 +139970,10 @@ "plasmid_name": "pHAGE-PIK3CG-A569T", "sequence-type": "addgene-full", "addgene_id": "116575", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116575.addgene-full.gb" }, @@ -111031,7 +139982,10 @@ "plasmid_name": "pDONR223_NUP88_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83011", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83011.addgene-full.gb" }, @@ -111040,7 +139994,10 @@ "plasmid_name": "pDONR223-PRKCB2", "sequence-type": "addgene-full", "addgene_id": "23764", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -111052,7 +140009,10 @@ "plasmid_name": "pDONR221_SLC19A1", "sequence-type": "addgene-full", "addgene_id": "132266", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132266.addgene-full.gb" }, @@ -111061,7 +140021,10 @@ "plasmid_name": "pYPQ220 (AsCpf1)", "sequence-type": "addgene-full", "addgene_id": "86208", - "references": [], + "references": [ + "https://doi.org/10.1038/nplants.2017.18", + "https://www.ncbi.nlm.nih.gov/pubmed/28211909" + ], "kit": null, "file": "data/addgene_plasmids/86208.addgene-full.gb" }, @@ -111070,7 +140033,9 @@ "plasmid_name": "pMpGWB224", "sequence-type": "depositor-full", "addgene_id": "68615", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68615.depositor-full.gb" }, @@ -111079,7 +140044,10 @@ "plasmid_name": "pMuLE ENTR SV40 L3-L2", "sequence-type": "depositor-full", "addgene_id": "62096", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62096.depositor-full.gb" }, @@ -111088,7 +140056,10 @@ "plasmid_name": "MAC_C_FLT4", "sequence-type": "addgene-full", "addgene_id": "187769", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187769.addgene-full.gb" }, @@ -111097,7 +140068,10 @@ "plasmid_name": "pDONR223_ERBB2_WT", "sequence-type": "addgene-full", "addgene_id": "82113", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82113.addgene-full.gb" }, @@ -111106,7 +140080,10 @@ "plasmid_name": "pAG424GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14272", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -111118,7 +140095,10 @@ "plasmid_name": "MAC_N_STA5B", "sequence-type": "addgene-full", "addgene_id": "167800", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167800.addgene-full.gb" }, @@ -111127,7 +140107,10 @@ "plasmid_name": "pENTR5'_ubi:loxP-EGFP-loxP", "sequence-type": "depositor-full", "addgene_id": "27322", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.059345", + "https://www.ncbi.nlm.nih.gov/pubmed/21138979" + ], "kit": null, "file": "data/addgene_plasmids/27322.depositor-full.gb" }, @@ -111136,7 +140119,10 @@ "plasmid_name": "CBR3_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176961", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176961.addgene-full.gb" }, @@ -111145,7 +140131,10 @@ "plasmid_name": "pENTR223-EBNA2", "sequence-type": "addgene-full", "addgene_id": "195815", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195815.addgene-full.gb" }, @@ -111154,7 +140143,10 @@ "plasmid_name": "pLenti6.2-ccdB-3xFLAG-V5", "sequence-type": "addgene-full", "addgene_id": "87071", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2014.05.039", + "https://www.ncbi.nlm.nih.gov/pubmed/25036637" + ], "kit": null, "file": "data/addgene_plasmids/87071.addgene-full.gb" }, @@ -111163,7 +140155,10 @@ "plasmid_name": "pDONR221-SLC50A1_STOP", "sequence-type": "depositor-full", "addgene_id": "161394", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161394.depositor-full.gb" }, @@ -111172,7 +140167,10 @@ "plasmid_name": "C514-E44: attB5r-SNAP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162962", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -111184,7 +140182,6 @@ "plasmid_name": "pLIX403-ccdB-NatMx", "sequence-type": "addgene-full", "addgene_id": "158563", - "references": [], "kit": null, "file": "data/addgene_plasmids/158563.addgene-full.gb" }, @@ -111193,7 +140190,10 @@ "plasmid_name": "pDONR221_SLC8A3", "sequence-type": "addgene-full", "addgene_id": "132186", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132186.addgene-full.gb" }, @@ -111202,7 +140202,10 @@ "plasmid_name": "pENTR221-IL6.Pro", "sequence-type": "addgene-full", "addgene_id": "79491", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79491.addgene-full.gb" }, @@ -111211,7 +140214,10 @@ "plasmid_name": "ACA8-mYFP", "sequence-type": "addgene-full", "addgene_id": "87245", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.111.192575", + "https://www.ncbi.nlm.nih.gov/pubmed/22535420" + ], "kit": null, "file": "data/addgene_plasmids/87245.addgene-full.gb" }, @@ -111220,7 +140226,6 @@ "plasmid_name": "pDEST26-Nluc-hTRAF3", "sequence-type": "addgene-full", "addgene_id": "197645", - "references": [], "kit": null, "file": "data/addgene_plasmids/197645.addgene-full.gb" }, @@ -111229,7 +140234,6 @@ "plasmid_name": "pDONR221-sh3bgr", "sequence-type": "addgene-full", "addgene_id": "192727", - "references": [], "kit": null, "file": "data/addgene_plasmids/192727.addgene-full.gb" }, @@ -111238,7 +140242,10 @@ "plasmid_name": "pEX-CFP-STIM1-deltaK", "sequence-type": "depositor-full", "addgene_id": "18860", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702866104", + "https://www.ncbi.nlm.nih.gov/pubmed/17517596" + ], "kit": null, "file": "data/addgene_plasmids/18860.depositor-full.gb" }, @@ -111247,7 +140254,10 @@ "plasmid_name": "PTPRA_deltaD1-SHC", "sequence-type": "addgene-full", "addgene_id": "139615", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139615.addgene-full.gb" }, @@ -111256,7 +140266,10 @@ "plasmid_name": "pDONR221_SLC25A30", "sequence-type": "addgene-full", "addgene_id": "132052", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132052.addgene-full.gb" }, @@ -111265,7 +140278,6 @@ "plasmid_name": "pENTR_Hu_PRC1(WT)", "sequence-type": "addgene-full", "addgene_id": "136349", - "references": [], "kit": null, "file": "data/addgene_plasmids/136349.addgene-full.gb" }, @@ -111274,7 +140286,10 @@ "plasmid_name": "MAC_N_LMNA", "sequence-type": "addgene-full", "addgene_id": "111688", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111688.addgene-full.gb" }, @@ -111283,7 +140298,6 @@ "plasmid_name": "pCSIIbleo-iRFP713(C15S/V256C)-P2A-EGFP", "sequence-type": "addgene-full", "addgene_id": "198062", - "references": [], "kit": null, "file": "data/addgene_plasmids/198062.addgene-full.gb" }, @@ -111292,7 +140306,10 @@ "plasmid_name": "pYPQ291-D573A", "sequence-type": "addgene-full", "addgene_id": "129676", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129676.addgene-full.gb" }, @@ -111301,7 +140318,10 @@ "plasmid_name": "pENTR-actin-G168D,Y169D", "sequence-type": "addgene-full", "addgene_id": "118384", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118384.addgene-full.gb" }, @@ -111310,7 +140330,10 @@ "plasmid_name": "pHAGE-FGFR2", "sequence-type": "addgene-full", "addgene_id": "116741", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116741.addgene-full.gb" }, @@ -111319,7 +140342,10 @@ "plasmid_name": "pSC15", "sequence-type": "addgene-full", "addgene_id": "104789", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104789.addgene-full.gb" }, @@ -111328,7 +140354,10 @@ "plasmid_name": "gRD21A-mRFP", "sequence-type": "addgene-full", "addgene_id": "181959", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.360", + "https://www.ncbi.nlm.nih.gov/pubmed/34877448" + ], "kit": null, "file": "data/addgene_plasmids/181959.addgene-full.gb" }, @@ -111337,7 +140366,10 @@ "plasmid_name": "pENTR D-TOPO-C2_11", "sequence-type": "depositor-full", "addgene_id": "60251", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60251.depositor-full.gb" }, @@ -111346,7 +140378,10 @@ "plasmid_name": "HJP-207-IVS-Syn21-gp41-1C-CreBC-WPREUw", "sequence-type": "addgene-full", "addgene_id": "162479", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162479.addgene-full.gb" }, @@ -111355,7 +140390,6 @@ "plasmid_name": "IDG_SLC26A1_OE_1", "sequence-type": "addgene-full", "addgene_id": "161630", - "references": [], "kit": null, "file": "data/addgene_plasmids/161630.addgene-full.gb" }, @@ -111364,7 +140398,10 @@ "plasmid_name": "pWS496", "sequence-type": "addgene-full", "addgene_id": "123041", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123041.addgene-full.gb" }, @@ -111373,7 +140410,10 @@ "plasmid_name": "pDONR221_SLC35G4", "sequence-type": "addgene-full", "addgene_id": "132120", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132120.addgene-full.gb" }, @@ -111382,7 +140422,6 @@ "plasmid_name": "Hs.KRAS4b G12A", "sequence-type": "depositor-full", "addgene_id": "83142", - "references": [], "kit": null, "file": "data/addgene_plasmids/83142.depositor-full.gb" }, @@ -111391,7 +140430,9 @@ "plasmid_name": "pcDNA5-3xFLAG-TAF5-\u2206ex8_WobbleMut", "sequence-type": "addgene-full", "addgene_id": "209056", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209056.addgene-full.gb" }, @@ -111400,7 +140441,10 @@ "plasmid_name": "pLX311 LacZ", "sequence-type": "addgene-full", "addgene_id": "117731", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117731.addgene-full.gb" }, @@ -111409,7 +140453,10 @@ "plasmid_name": "pGATE-1", "sequence-type": "addgene-full", "addgene_id": "205743", - "references": [], + "references": [ + "https://doi.org/10.2144/btn-2023-0001", + "https://www.ncbi.nlm.nih.gov/pubmed/37424091" + ], "kit": null, "file": "data/addgene_plasmids/205743.addgene-full.gb" }, @@ -111418,7 +140465,10 @@ "plasmid_name": "pDONR221-ZNF835", "sequence-type": "depositor-full", "addgene_id": "101472", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101472.depositor-full.gb" }, @@ -111427,7 +140477,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0385-luc2", "sequence-type": "addgene-full", "addgene_id": "214622", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214622.addgene-full.gb" }, @@ -111448,7 +140501,10 @@ "plasmid_name": "pDONR223_ATG16L1_WT", "sequence-type": "addgene-full", "addgene_id": "82255", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82255.addgene-full.gb" }, @@ -111457,7 +140513,10 @@ "plasmid_name": "pDONR221-SPNS1_STOP", "sequence-type": "addgene-full", "addgene_id": "161439", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161439.addgene-full.gb" }, @@ -111466,7 +140525,6 @@ "plasmid_name": "pAG416GAL10-LGTV_NS2B-GS-NS3", "sequence-type": "addgene-full", "addgene_id": "203468", - "references": [], "kit": null, "file": "data/addgene_plasmids/203468.addgene-full.gb" }, @@ -111475,7 +140533,10 @@ "plasmid_name": "pMDJ20 - pEXP [Psmu-1 | Cre Recombinase (PATCs) | smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159808", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159808.addgene-full.gb" }, @@ -111484,7 +140545,10 @@ "plasmid_name": "pAC93-pmax-dCas9VP160", "sequence-type": "addgene-full", "addgene_id": "48225", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/48225.addgene-full.gb" }, @@ -111493,7 +140557,10 @@ "plasmid_name": "pENTR223-PRDX5K83R", "sequence-type": "addgene-full", "addgene_id": "98693", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "file": "data/addgene_plasmids/98693.addgene-full.gb" }, @@ -111502,7 +140569,10 @@ "plasmid_name": "LIIIbeta F C-D", "sequence-type": "depositor-full", "addgene_id": "54391", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54391.depositor-full.gb" }, @@ -111511,7 +140581,10 @@ "plasmid_name": "pEntry_HCoV-229E-nsp16", "sequence-type": "depositor-full", "addgene_id": "168962", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168962.depositor-full.gb" }, @@ -111520,7 +140593,10 @@ "plasmid_name": "pHAGE-PIK3CA-V344M", "sequence-type": "addgene-full", "addgene_id": "116548", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116548.addgene-full.gb" }, @@ -111529,7 +140605,6 @@ "plasmid_name": "BRAF - G518C in pENTR", "sequence-type": "addgene-full", "addgene_id": "216612", - "references": [], "kit": null, "file": "data/addgene_plasmids/216612.addgene-full.gb" }, @@ -111538,7 +140613,10 @@ "plasmid_name": "pMuLE ENTR CMV CreERT2 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62172", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62172.depositor-full.gb" }, @@ -111547,7 +140625,10 @@ "plasmid_name": "pENTR-R4R3-3xmEGFP-C", "sequence-type": "addgene-full", "addgene_id": "113751", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -111559,7 +140640,10 @@ "plasmid_name": "LacZ in pLX304", "sequence-type": "addgene-full", "addgene_id": "42560", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/23245941" + ], "kit": null, "file": "data/addgene_plasmids/42560.addgene-full.gb" }, @@ -111568,7 +140652,6 @@ "plasmid_name": "R777-E141 Hs.NFE2L2", "sequence-type": "depositor-full", "addgene_id": "70425", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -111580,7 +140663,10 @@ "plasmid_name": "pAG426GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14396", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -111592,7 +140678,6 @@ "plasmid_name": "pLgw EcoDam-V5-ELK1Y158A", "sequence-type": "addgene-full", "addgene_id": "98608", - "references": [], "kit": null, "file": "data/addgene_plasmids/98608.addgene-full.gb" }, @@ -111601,7 +140686,10 @@ "plasmid_name": "pDONR223_NFKBIA_p.P137S", "sequence-type": "addgene-full", "addgene_id": "81367", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -111613,7 +140701,10 @@ "plasmid_name": "MAC_N_PAX9", "sequence-type": "addgene-full", "addgene_id": "167789", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167789.addgene-full.gb" }, @@ -111622,7 +140713,10 @@ "plasmid_name": "MAC_C_NTRK3", "sequence-type": "addgene-full", "addgene_id": "187754", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187754.addgene-full.gb" }, @@ -111631,7 +140725,10 @@ "plasmid_name": "GFP-JIP4", "sequence-type": "addgene-full", "addgene_id": "164620", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164620.addgene-full.gb" }, @@ -111640,7 +140737,10 @@ "plasmid_name": "pENTR223-BALF3", "sequence-type": "addgene-full", "addgene_id": "195828", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195828.addgene-full.gb" }, @@ -111649,7 +140749,9 @@ "plasmid_name": "pDONR207-MpPHOT", "sequence-type": "addgene-full", "addgene_id": "100600", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27027881" + ], "kit": null, "file": "data/addgene_plasmids/100600.addgene-full.gb" }, @@ -111658,7 +140760,10 @@ "plasmid_name": "pCellFree_G03 RUVBL1", "sequence-type": "addgene-full", "addgene_id": "67091", - "references": [], + "references": [ + "https://doi.org/10.1002/bit.25814", + "https://www.ncbi.nlm.nih.gov/pubmed/26301602" + ], "kit": null, "file": "data/addgene_plasmids/67091.addgene-full.gb" }, @@ -111667,7 +140772,10 @@ "plasmid_name": "pHAGE-PTEN-R233*", "sequence-type": "addgene-full", "addgene_id": "116633", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116633.addgene-full.gb" }, @@ -111676,7 +140784,10 @@ "plasmid_name": "LTN1_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53855", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53855.addgene-full.gb" }, @@ -111685,7 +140796,6 @@ "plasmid_name": "TCF4 in pENTR", "sequence-type": "addgene-full", "addgene_id": "216569", - "references": [], "kit": null, "file": "data/addgene_plasmids/216569.addgene-full.gb" }, @@ -111694,7 +140804,10 @@ "plasmid_name": "pENTR-L1-U6-BbsI-R5", "sequence-type": "addgene-full", "addgene_id": "141031", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141031.addgene-full.gb" }, @@ -111703,7 +140816,6 @@ "plasmid_name": "IDG_CACNG6_OE_1", "sequence-type": "addgene-full", "addgene_id": "161696", - "references": [], "kit": null, "file": "data/addgene_plasmids/161696.addgene-full.gb" }, @@ -111712,7 +140824,10 @@ "plasmid_name": "pFRT/TO/HIS/FLAG/HA-HNRNPD", "sequence-type": "depositor-full", "addgene_id": "38066", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2012.05.021", + "https://www.ncbi.nlm.nih.gov/pubmed/22681889" + ], "kit": null, "file": "data/addgene_plasmids/38066.depositor-full.gb" }, @@ -111721,7 +140836,10 @@ "plasmid_name": "pDONR P2R-P3-V5-6xHis", "sequence-type": "depositor-full", "addgene_id": "48347", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -111733,7 +140851,10 @@ "plasmid_name": "pOPTXGARE", "sequence-type": "depositor-full", "addgene_id": "68542", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-13-97", + "https://www.ncbi.nlm.nih.gov/pubmed/24206622" + ], "kit": null, "file": "data/addgene_plasmids/68542.depositor-full.gb" }, @@ -111742,7 +140863,10 @@ "plasmid_name": "pEF5B-FRT-control-APEX", "sequence-type": "depositor-full", "addgene_id": "73187", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.015", + "https://www.ncbi.nlm.nih.gov/pubmed/26585297" + ], "kit": null, "file": "data/addgene_plasmids/73187.depositor-full.gb" }, @@ -111751,7 +140875,6 @@ "plasmid_name": "pAG416GAL10-Bat-CoV-HKU4_3CL", "sequence-type": "addgene-full", "addgene_id": "201943", - "references": [], "kit": null, "file": "data/addgene_plasmids/201943.addgene-full.gb" }, @@ -111760,7 +140883,10 @@ "plasmid_name": "pHAGE-GUCY2C-G549C", "sequence-type": "addgene-full", "addgene_id": "116407", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116407.addgene-full.gb" }, @@ -111769,7 +140895,10 @@ "plasmid_name": "RET_KD-V5", "sequence-type": "addgene-full", "addgene_id": "139628", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139628.addgene-full.gb" }, @@ -111778,7 +140907,10 @@ "plasmid_name": "Active Wnt9B-V5", "sequence-type": "depositor-full", "addgene_id": "43821", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43821.depositor-full.gb" }, @@ -111787,7 +140919,10 @@ "plasmid_name": "pDL217", "sequence-type": "addgene-full", "addgene_id": "175921", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175921.addgene-full.gb" }, @@ -111796,7 +140931,10 @@ "plasmid_name": "pLX317 YAP1", "sequence-type": "addgene-full", "addgene_id": "193683", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193683.addgene-full.gb" }, @@ -111805,7 +140943,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aa3.8.3", "sequence-type": "addgene-full", "addgene_id": "136374", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136374.addgene-full.gb" }, @@ -111814,7 +140955,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-1", "sequence-type": "depositor-full", "addgene_id": "46688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46688.depositor-full.gb" }, @@ -111823,7 +140967,10 @@ "plasmid_name": "457 p3E-2A-EGFPpA", "sequence-type": "addgene-full", "addgene_id": "195967", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195967.addgene-full.gb" }, @@ -111832,7 +140979,10 @@ "plasmid_name": "pSC26", "sequence-type": "addgene-full", "addgene_id": "104800", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104800.addgene-full.gb" }, @@ -111841,7 +140991,10 @@ "plasmid_name": "pMx/ATP11B(E180Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209262", - "references": [], + "references": [ + "https://doi.org/10.1002/1873-3468.13629", + "https://www.ncbi.nlm.nih.gov/pubmed/31571211" + ], "kit": null, "file": "data/addgene_plasmids/209262.addgene-full.gb" }, @@ -111850,7 +141003,10 @@ "plasmid_name": "pTW927", "sequence-type": "addgene-full", "addgene_id": "115961", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115961.addgene-full.gb" }, @@ -111859,7 +141015,6 @@ "plasmid_name": "pENTR-mKO1", "sequence-type": "addgene-full", "addgene_id": "139553", - "references": [], "kit": null, "file": "data/addgene_plasmids/139553.addgene-full.gb" }, @@ -111868,7 +141023,10 @@ "plasmid_name": "pDONR223-ABL1", "sequence-type": "addgene-full", "addgene_id": "23939", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -111880,7 +141038,10 @@ "plasmid_name": "R4pGWB401+Citrine", "sequence-type": "addgene-full", "addgene_id": "128432", - "references": [], + "references": [ + "https://doi.org/10.1007/s11103-019-00909-8", + "https://www.ncbi.nlm.nih.gov/pubmed/31422517" + ], "kit": null, "file": "data/addgene_plasmids/128432.addgene-full.gb" }, @@ -111889,7 +141050,6 @@ "plasmid_name": "p667-UBC-PKMYT1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135246", - "references": [], "kit": null, "file": "data/addgene_plasmids/135246.addgene-full.gb" }, @@ -111898,7 +141058,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-UD-mCherr", "sequence-type": "addgene-full", "addgene_id": "140307", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140307.addgene-full.gb" }, @@ -111907,7 +141070,10 @@ "plasmid_name": "pDONR221-ZNF441", "sequence-type": "depositor-full", "addgene_id": "101508", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101508.depositor-full.gb" }, @@ -111916,7 +141082,10 @@ "plasmid_name": "TroponinT-Gateway", "sequence-type": "depositor-full", "addgene_id": "46026", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2013.04.004", + "https://www.ncbi.nlm.nih.gov/pubmed/23591016" + ], "kit": null, "file": "data/addgene_plasmids/46026.depositor-full.gb" }, @@ -111925,7 +141094,10 @@ "plasmid_name": "pDONR223_EDNRB_p.F292L", "sequence-type": "addgene-full", "addgene_id": "81402", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -111937,7 +141109,10 @@ "plasmid_name": "p3E-mTagBFP-CAAX", "sequence-type": "depositor-full", "addgene_id": "75176", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -111949,7 +141124,10 @@ "plasmid_name": "pEPYCdKN0009", "sequence-type": "addgene-full", "addgene_id": "196150", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196150.addgene-full.gb" }, @@ -111958,7 +141136,9 @@ "plasmid_name": "pPB-cT3G-cERP2-HHEX", "sequence-type": "addgene-full", "addgene_id": "222928", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.07.11.499564" + ], "kit": null, "file": "data/addgene_plasmids/222928.addgene-full.gb" }, @@ -111967,7 +141147,10 @@ "plasmid_name": "TFORF3506", "sequence-type": "addgene-full", "addgene_id": "144982", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144982.addgene-full.gb" }, @@ -111976,7 +141159,9 @@ "plasmid_name": "pDONR221-FKBP8(2of2)", "sequence-type": "addgene-full", "addgene_id": "166175", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166175.addgene-full.gb" }, @@ -111985,7 +141170,10 @@ "plasmid_name": "pDONR-AFB2", "sequence-type": "depositor-full", "addgene_id": "83845", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83845.depositor-full.gb" }, @@ -111994,7 +141182,10 @@ "plasmid_name": "pGCS-N2(3xHA)", "sequence-type": "addgene-full", "addgene_id": "85719", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -112006,7 +141197,10 @@ "plasmid_name": "pBA2219", "sequence-type": "depositor-full", "addgene_id": "38152", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2011.11.015", + "https://www.ncbi.nlm.nih.gov/pubmed/22197595" + ], "kit": null, "file": "data/addgene_plasmids/38152.depositor-full.gb" }, @@ -112015,7 +141209,10 @@ "plasmid_name": "TFORF3160", "sequence-type": "addgene-full", "addgene_id": "144636", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144636.addgene-full.gb" }, @@ -112024,7 +141221,10 @@ "plasmid_name": "pDEST 544-XERICO", "sequence-type": "addgene-full", "addgene_id": "118673", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118673.addgene-full.gb" }, @@ -112033,7 +141233,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp5", "sequence-type": "depositor-full", "addgene_id": "168818", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168818.depositor-full.gb" }, @@ -112042,7 +141245,10 @@ "plasmid_name": "pHAGE-BRAF-G469S", "sequence-type": "addgene-full", "addgene_id": "116156", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116156.addgene-full.gb" }, @@ -112051,7 +141257,10 @@ "plasmid_name": "pDONR223_SPOP_WT", "sequence-type": "addgene-full", "addgene_id": "81856", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112063,7 +141272,6 @@ "plasmid_name": "pCWXPGR-pTF-EpoRtm", "sequence-type": "addgene-full", "addgene_id": "114286", - "references": [], "kit": null, "file": "data/addgene_plasmids/114286.addgene-full.gb" }, @@ -112072,7 +141280,10 @@ "plasmid_name": "pFG7m34GW", "sequence-type": "addgene-full", "addgene_id": "133747", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0695-2", + "https://www.ncbi.nlm.nih.gov/pubmed/32601420" + ], "kit": null, "file": "data/addgene_plasmids/133747.addgene-full.gb" }, @@ -112081,7 +141292,10 @@ "plasmid_name": "pTol2p2A--3mnx1:mTagBFP-NS-MCS", "sequence-type": "addgene-full", "addgene_id": "78250", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -112093,7 +141307,10 @@ "plasmid_name": "pDONR221-kcnk3a", "sequence-type": "addgene-full", "addgene_id": "208985", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208985.addgene-full.gb" }, @@ -112102,7 +141319,10 @@ "plasmid_name": "FU-MAP2-Gateway", "sequence-type": "depositor-full", "addgene_id": "43915", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0028719", + "https://www.ncbi.nlm.nih.gov/pubmed/22174877" + ], "kit": null, "file": "data/addgene_plasmids/43915.depositor-full.gb" }, @@ -112111,7 +141331,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway mmu SE-Irf2bpl H", "sequence-type": "addgene-full", "addgene_id": "89377", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89377.addgene-full.gb" }, @@ -112120,7 +141343,10 @@ "plasmid_name": "pDONR223_PEX3_WT", "sequence-type": "addgene-full", "addgene_id": "81779", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112132,7 +141358,10 @@ "plasmid_name": "pJW4.21", "sequence-type": "depositor-full", "addgene_id": "62875", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62875.depositor-full.gb" }, @@ -112141,7 +141370,10 @@ "plasmid_name": "AAEL010043 DH31R", "sequence-type": "addgene-full", "addgene_id": "115384", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115384.addgene-full.gb" }, @@ -112150,7 +141382,10 @@ "plasmid_name": "TFORF3443", "sequence-type": "addgene-full", "addgene_id": "144919", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144919.addgene-full.gb" }, @@ -112159,7 +141394,10 @@ "plasmid_name": "pME-FusionRed-NS", "sequence-type": "addgene-full", "addgene_id": "80500", - "references": [], + "references": [ + "https://doi.org/10.1080/21592799.2017.1301151", + "https://www.ncbi.nlm.nih.gov/pubmed/28396820" + ], "kit": null, "file": "data/addgene_plasmids/80500.addgene-full.gb" }, @@ -112168,7 +141406,10 @@ "plasmid_name": "KP501: pMVP (L5-L4) eYFP-P2A", "sequence-type": "addgene-full", "addgene_id": "121714", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121714.addgene-full.gb" }, @@ -112177,7 +141418,10 @@ "plasmid_name": "pDONR223_FBXW7_p.R465C", "sequence-type": "addgene-full", "addgene_id": "81499", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112189,7 +141433,10 @@ "plasmid_name": "pDONR223_DNAJC15_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82964", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82964.addgene-full.gb" }, @@ -112198,7 +141445,10 @@ "plasmid_name": "TFORF3023", "sequence-type": "addgene-full", "addgene_id": "144499", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144499.addgene-full.gb" }, @@ -112207,7 +141457,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf6", "sequence-type": "addgene-full", "addgene_id": "158374", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158374.addgene-full.gb" }, @@ -112216,7 +141469,10 @@ "plasmid_name": "5'-3xFLAG L3mbtl3-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212058", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212058.addgene-full.gb" }, @@ -112225,7 +141481,10 @@ "plasmid_name": "pDONR223_STK19_WT", "sequence-type": "addgene-full", "addgene_id": "81919", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112237,7 +141496,10 @@ "plasmid_name": "pDONR221-SLC35D2_STOP", "sequence-type": "addgene-full", "addgene_id": "161288", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161288.addgene-full.gb" }, @@ -112246,7 +141508,10 @@ "plasmid_name": "pCS2+ Bmi1-cherry-HA", "sequence-type": "depositor-full", "addgene_id": "30516", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2011.144", + "https://www.ncbi.nlm.nih.gov/pubmed/21552206" + ], "kit": null, "file": "data/addgene_plasmids/30516.depositor-full.gb" }, @@ -112255,7 +141520,10 @@ "plasmid_name": "pT3-EFa1-HA-Jag1", "sequence-type": "addgene-full", "addgene_id": "46051", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2013.02.009", + "https://www.ncbi.nlm.nih.gov/pubmed/23419361" + ], "kit": null, "file": "data/addgene_plasmids/46051.addgene-full.gb" }, @@ -112264,7 +141532,10 @@ "plasmid_name": "TXNIP-py", "sequence-type": "addgene-full", "addgene_id": "200090", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2023.106150", + "https://www.ncbi.nlm.nih.gov/pubmed/36890792" + ], "kit": null, "file": "data/addgene_plasmids/200090.addgene-full.gb" }, @@ -112273,7 +141544,10 @@ "plasmid_name": "FZD8", "sequence-type": "addgene-full", "addgene_id": "155618", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155618.addgene-full.gb" }, @@ -112282,7 +141556,10 @@ "plasmid_name": "pEN_TT 3xFLAG-KPNA1", "sequence-type": "addgene-full", "addgene_id": "192304", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192304.addgene-full.gb" }, @@ -112291,7 +141568,6 @@ "plasmid_name": "L1-10XQUAS-R5", "sequence-type": "depositor-full", "addgene_id": "41435", - "references": [], "kit": null, "file": "data/addgene_plasmids/41435.depositor-full.gb" }, @@ -112300,7 +141576,10 @@ "plasmid_name": "TFORF3303", "sequence-type": "addgene-full", "addgene_id": "144779", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144779.addgene-full.gb" }, @@ -112309,7 +141588,10 @@ "plasmid_name": "TFORF3380", "sequence-type": "addgene-full", "addgene_id": "144856", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144856.addgene-full.gb" }, @@ -112318,7 +141600,10 @@ "plasmid_name": "pDONR221_MFSD4A", "sequence-type": "addgene-full", "addgene_id": "131917", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131917.addgene-full.gb" }, @@ -112327,7 +141612,10 @@ "plasmid_name": "pDEST-hPDI", "sequence-type": "depositor-full", "addgene_id": "60555", - "references": [], + "references": [ + "https://doi.org/10.1007/s12010-013-0140-3", + "https://www.ncbi.nlm.nih.gov/pubmed/23471584" + ], "kit": null, "file": "data/addgene_plasmids/60555.depositor-full.gb" }, @@ -112336,7 +141624,10 @@ "plasmid_name": "pEBTetBl-CLIP-FOP", "sequence-type": "addgene-full", "addgene_id": "136845", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136845.addgene-full.gb" }, @@ -112345,7 +141636,6 @@ "plasmid_name": "R777-E227 Hs.RASA1", "sequence-type": "depositor-full", "addgene_id": "70511", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -112357,7 +141647,6 @@ "plasmid_name": "pTAU-CN-DM", "sequence-type": "addgene-full", "addgene_id": "111230", - "references": [], "kit": null, "file": "data/addgene_plasmids/111230.addgene-full.gb" }, @@ -112366,7 +141655,10 @@ "plasmid_name": "pDONR221-SLC22A18_STOP", "sequence-type": "addgene-full", "addgene_id": "161213", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161213.addgene-full.gb" }, @@ -112375,7 +141667,10 @@ "plasmid_name": "PRKCDPB_pLX307", "sequence-type": "addgene-full", "addgene_id": "98359", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98359.addgene-full.gb" }, @@ -112384,7 +141679,10 @@ "plasmid_name": "pDONR223_ASCL4_p.T114M", "sequence-type": "addgene-full", "addgene_id": "81636", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112396,7 +141694,10 @@ "plasmid_name": "actc1b-mKate2-RhoAa-DN", "sequence-type": "addgene-full", "addgene_id": "109526", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109526.addgene-full.gb" }, @@ -112405,7 +141706,10 @@ "plasmid_name": "pEntry_MERS-CoV-ORF5", "sequence-type": "addgene-full", "addgene_id": "168830", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168830.addgene-full.gb" }, @@ -112414,7 +141718,10 @@ "plasmid_name": "KO701: pMVP (L3-L2) HA tag + pA; EF1a::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121806", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121806.addgene-full.gb" }, @@ -112423,7 +141730,10 @@ "plasmid_name": "pGCS-C1m(5xMYC)", "sequence-type": "addgene-full", "addgene_id": "85724", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -112435,7 +141745,9 @@ "plasmid_name": "pMpGWB201", "sequence-type": "depositor-full", "addgene_id": "68592", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68592.depositor-full.gb" }, @@ -112444,7 +141756,9 @@ "plasmid_name": "pDEST17-His10-Smt3-ccdB-SNAP", "sequence-type": "addgene-full", "addgene_id": "166148", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166148.addgene-full.gb" }, @@ -112453,7 +141767,10 @@ "plasmid_name": "pRSET-Cm-CspA1", "sequence-type": "addgene-full", "addgene_id": "215398", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2319499121", + "https://www.ncbi.nlm.nih.gov/pubmed/38814867" + ], "kit": null, "file": "data/addgene_plasmids/215398.addgene-full.gb" }, @@ -112462,7 +141779,10 @@ "plasmid_name": "EHD2-T72A-mEGFP", "sequence-type": "depositor-full", "addgene_id": "45934", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2012.98", + "https://www.ncbi.nlm.nih.gov/pubmed/22505029" + ], "kit": null, "file": "data/addgene_plasmids/45934.depositor-full.gb" }, @@ -112471,7 +141791,6 @@ "plasmid_name": "pLEX_306", "sequence-type": "addgene-full", "addgene_id": "41391", - "references": [], "kit": null, "file": "data/addgene_plasmids/41391.addgene-full.gb" }, @@ -112480,7 +141799,9 @@ "plasmid_name": "pPB-cT3G-cERP2-DMC1", "sequence-type": "addgene-full", "addgene_id": "222541", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222541.addgene-full.gb" }, @@ -112489,7 +141810,10 @@ "plasmid_name": "pGADT7-GW", "sequence-type": "addgene-full", "addgene_id": "61702", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2009.04048.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19843313" + ], "kit": null, "file": "data/addgene_plasmids/61702.addgene-full.gb" }, @@ -112498,7 +141822,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-60", "sequence-type": "depositor-full", "addgene_id": "46658", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46658.depositor-full.gb" }, @@ -112507,7 +141834,10 @@ "plasmid_name": "p7138 pHAGE-P-CMVt-N-HA-GAW-PHKB", "sequence-type": "addgene-full", "addgene_id": "100158", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100158.addgene-full.gb" }, @@ -112528,7 +141858,10 @@ "plasmid_name": "pDONR223_STK11_WT", "sequence-type": "addgene-full", "addgene_id": "81744", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112540,7 +141873,10 @@ "plasmid_name": "MultiMate-Rainbow", "sequence-type": "addgene-full", "addgene_id": "206252", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206252.addgene-full.gb" }, @@ -112549,7 +141885,10 @@ "plasmid_name": "pAG306GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14308", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -112561,7 +141900,9 @@ "plasmid_name": "pME-Myc-BioID2-MCS2 (JDW 1209)", "sequence-type": "addgene-full", "addgene_id": "224511", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224511.addgene-full.gb" }, @@ -112570,7 +141911,10 @@ "plasmid_name": "R620-M21-303: CMV51p> SARS-CoV-2 S(1-1213)-2P-T4f-His6 B.1.429", "sequence-type": "addgene-full", "addgene_id": "170200", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/170200.addgene-full.gb" }, @@ -112579,7 +141923,10 @@ "plasmid_name": "pDONR221-SLC6A16_STOP", "sequence-type": "addgene-full", "addgene_id": "161361", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161361.addgene-full.gb" }, @@ -112588,7 +141935,10 @@ "plasmid_name": "pGWB416", "sequence-type": "depositor-full", "addgene_id": "74810", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74810.depositor-full.gb" }, @@ -112597,7 +141947,10 @@ "plasmid_name": "pDONR221-ZNF234", "sequence-type": "depositor-full", "addgene_id": "101611", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101611.depositor-full.gb" }, @@ -112606,7 +141959,10 @@ "plasmid_name": "TFORF3094", "sequence-type": "addgene-full", "addgene_id": "144570", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144570.addgene-full.gb" }, @@ -112615,7 +141971,10 @@ "plasmid_name": "pDONR221_SLC6A14", "sequence-type": "addgene-full", "addgene_id": "131865", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131865.addgene-full.gb" }, @@ -112624,7 +141983,10 @@ "plasmid_name": "TFORF3214", "sequence-type": "addgene-full", "addgene_id": "144690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144690.addgene-full.gb" }, @@ -112633,7 +141995,10 @@ "plasmid_name": "TFORF3448", "sequence-type": "addgene-full", "addgene_id": "144924", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144924.addgene-full.gb" }, @@ -112642,7 +142007,6 @@ "plasmid_name": "R777-E037 Hs.DUSP3", "sequence-type": "depositor-full", "addgene_id": "70321", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -112654,7 +142018,10 @@ "plasmid_name": "pHAGE-BRAF-W531C", "sequence-type": "addgene-full", "addgene_id": "116210", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116210.addgene-full.gb" }, @@ -112663,7 +142030,10 @@ "plasmid_name": "pDONR223_RBKS_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82959", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82959.addgene-full.gb" }, @@ -112672,7 +142042,10 @@ "plasmid_name": "pDONR221-SLC6A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161081", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161081.addgene-full.gb" }, @@ -112681,7 +142054,10 @@ "plasmid_name": "pDONR223_NKX2-1_V205F", "sequence-type": "addgene-full", "addgene_id": "221473", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221473.addgene-full.gb" }, @@ -112690,7 +142066,10 @@ "plasmid_name": "IG101: pMVP (L5-L4) TRE promoter", "sequence-type": "addgene-full", "addgene_id": "121729", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121729.addgene-full.gb" }, @@ -112699,7 +142078,10 @@ "plasmid_name": "pMXs-c-Myc-IP", "sequence-type": "addgene-full", "addgene_id": "15921", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2006.07.024", + "https://www.ncbi.nlm.nih.gov/pubmed/16904174" + ], "kit": null, "file": "data/addgene_plasmids/15921.addgene-full.gb" }, @@ -112708,7 +142090,6 @@ "plasmid_name": "R777-E324 Hs.SPRED2-nostop", "sequence-type": "depositor-full", "addgene_id": "70608", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -112720,7 +142101,10 @@ "plasmid_name": "p3E-RhoAb-DN", "sequence-type": "addgene-full", "addgene_id": "109580", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109580.addgene-full.gb" }, @@ -112729,7 +142113,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.H36Y", "sequence-type": "addgene-full", "addgene_id": "81690", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112741,7 +142128,10 @@ "plasmid_name": "p8180 pHAGE N-V5 PTPN14 \u0394PPXY3/4", "sequence-type": "addgene-full", "addgene_id": "221647", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.01811-24", + "https://www.ncbi.nlm.nih.gov/pubmed/39248565" + ], "kit": null, "file": "data/addgene_plasmids/221647.addgene-full.gb" }, @@ -112750,7 +142140,6 @@ "plasmid_name": "pOLENTE", "sequence-type": "depositor-full", "addgene_id": "80683", - "references": [], "kit": null, "file": "data/addgene_plasmids/80683.depositor-full.gb" }, @@ -112759,7 +142148,10 @@ "plasmid_name": "pDONR223_SV2C_WT", "sequence-type": "addgene-full", "addgene_id": "81924", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112771,7 +142163,10 @@ "plasmid_name": "5'-3xFLAG Mef2d+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212065", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212065.addgene-full.gb" }, @@ -112780,7 +142175,10 @@ "plasmid_name": "pDONR221-SLC22A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161155", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161155.addgene-full.gb" }, @@ -112789,7 +142187,10 @@ "plasmid_name": "pHWBF07EC", "sequence-type": "addgene-full", "addgene_id": "130828", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130828.addgene-full.gb" }, @@ -112798,7 +142199,10 @@ "plasmid_name": "pDONR223_POT1_p.L388M", "sequence-type": "addgene-full", "addgene_id": "81570", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112810,7 +142214,10 @@ "plasmid_name": "pDONR223_RIT1_p.F82L", "sequence-type": "addgene-full", "addgene_id": "82739", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -112822,7 +142229,10 @@ "plasmid_name": "pDONR223-SLC7A11 sh926R", "sequence-type": "addgene-full", "addgene_id": "118701", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.042", + "https://www.ncbi.nlm.nih.gov/pubmed/27368101" + ], "kit": null, "file": "data/addgene_plasmids/118701.addgene-full.gb" }, @@ -112831,7 +142241,10 @@ "plasmid_name": "pSLIK mCh-V5-NES-EGFP-Erbb2 NLS zeo", "sequence-type": "addgene-full", "addgene_id": "192339", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192339.addgene-full.gb" }, @@ -112840,7 +142253,10 @@ "plasmid_name": "GLE1", "sequence-type": "addgene-full", "addgene_id": "155625", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155625.addgene-full.gb" }, @@ -112849,7 +142265,10 @@ "plasmid_name": "TFORF3268", "sequence-type": "addgene-full", "addgene_id": "144744", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144744.addgene-full.gb" }, @@ -112858,7 +142277,10 @@ "plasmid_name": "actc1b-mKate2-rab9b", "sequence-type": "addgene-full", "addgene_id": "109660", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109660.addgene-full.gb" }, @@ -112867,7 +142289,6 @@ "plasmid_name": "pENTR223 Rab11A WT-STOP", "sequence-type": "addgene-full", "addgene_id": "228030", - "references": [], "kit": null, "file": "data/addgene_plasmids/228030.addgene-full.gb" }, @@ -112876,7 +142297,10 @@ "plasmid_name": "pAG425GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14346", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -112888,7 +142312,10 @@ "plasmid_name": "pcDNA3_SP-HTR2A-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194369", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194369.addgene-full.gb" }, @@ -112897,7 +142324,10 @@ "plasmid_name": "pCM3.06", "sequence-type": "depositor-full", "addgene_id": "19602", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.0030233", + "https://www.ncbi.nlm.nih.gov/pubmed/18166083" + ], "kit": null, "file": "data/addgene_plasmids/19602.depositor-full.gb" }, @@ -112906,7 +142336,6 @@ "plasmid_name": "pENTR_Wheat_live_Cas9", "sequence-type": "addgene-full", "addgene_id": "126880", - "references": [], "kit": null, "file": "data/addgene_plasmids/126880.addgene-full.gb" }, @@ -112915,7 +142344,10 @@ "plasmid_name": "pE3n", "sequence-type": "depositor-full", "addgene_id": "17457", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17457.depositor-full.gb" }, @@ -112924,7 +142356,10 @@ "plasmid_name": "pDONR223_BRAF_p.D594H", "sequence-type": "addgene-full", "addgene_id": "82816", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82816.addgene-full.gb" }, @@ -112933,7 +142368,10 @@ "plasmid_name": "pEBTetBl-CLIP-Centrobin", "sequence-type": "addgene-full", "addgene_id": "136878", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136878.addgene-full.gb" }, @@ -112942,7 +142380,10 @@ "plasmid_name": "pDEST-ERBB3-v1", "sequence-type": "addgene-full", "addgene_id": "154893", - "references": [], + "references": [ + "https://doi.org/10.1038/s41388-020-01604-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33420373" + ], "kit": null, "file": "data/addgene_plasmids/154893.addgene-full.gb" }, @@ -112951,7 +142392,10 @@ "plasmid_name": "NPRL2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98364", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98364.addgene-full.gb" }, @@ -112960,7 +142404,10 @@ "plasmid_name": "pGL3-MTS-G3635A-L17-FZY2-S100C-UGI-Puro", "sequence-type": "addgene-full", "addgene_id": "209641", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-42359-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37857619" + ], "kit": null, "file": "data/addgene_plasmids/209641.addgene-full.gb" }, @@ -112969,7 +142416,10 @@ "plasmid_name": "pAD-CMV-STAT5B-DN-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83262", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "file": "data/addgene_plasmids/83262.addgene-full.gb" }, @@ -112978,7 +142428,10 @@ "plasmid_name": "pHAGE-WDR12-Q93K", "sequence-type": "addgene-full", "addgene_id": "116706", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116706.addgene-full.gb" }, @@ -112987,7 +142440,6 @@ "plasmid_name": "R777-E255 Hs.RASSF2", "sequence-type": "depositor-full", "addgene_id": "70539", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -112999,7 +142451,10 @@ "plasmid_name": "pYPQ265C", "sequence-type": "addgene-full", "addgene_id": "164715", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164715.addgene-full.gb" }, @@ -113008,7 +142463,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 N-term COILIN", "sequence-type": "addgene-full", "addgene_id": "187581", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187581.addgene-full.gb" }, @@ -113017,7 +142475,10 @@ "plasmid_name": "LYSO-LRRK2", "sequence-type": "addgene-full", "addgene_id": "193582", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2205492119", + "https://www.ncbi.nlm.nih.gov/pubmed/36256825" + ], "kit": null, "file": "data/addgene_plasmids/193582.addgene-full.gb" }, @@ -113026,7 +142487,6 @@ "plasmid_name": "IDG_GLRA3_OE_1", "sequence-type": "addgene-full", "addgene_id": "161677", - "references": [], "kit": null, "file": "data/addgene_plasmids/161677.addgene-full.gb" }, @@ -113035,7 +142495,10 @@ "plasmid_name": "pCAG/ATP11A-HA", "sequence-type": "addgene-full", "addgene_id": "209218", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209218.addgene-full.gb" }, @@ -113044,7 +142507,6 @@ "plasmid_name": "pENTR-R2L3-IRES-puro-pA", "sequence-type": "addgene-full", "addgene_id": "139529", - "references": [], "kit": null, "file": "data/addgene_plasmids/139529.addgene-full.gb" }, @@ -113053,7 +142515,10 @@ "plasmid_name": "pDONR223-PTK7", "sequence-type": "addgene-full", "addgene_id": "23943", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -113065,7 +142530,10 @@ "plasmid_name": "pGMCS-0X-P38-PanBmGFP", "sequence-type": "depositor-full", "addgene_id": "27127", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1001040", + "https://www.ncbi.nlm.nih.gov/pubmed/20711362" + ], "kit": null, "file": "data/addgene_plasmids/27127.depositor-full.gb" }, @@ -113074,7 +142542,6 @@ "plasmid_name": "pAG416GAL-Bat-SL-CoVZC45_PLP", "sequence-type": "addgene-full", "addgene_id": "201939", - "references": [], "kit": null, "file": "data/addgene_plasmids/201939.addgene-full.gb" }, @@ -113083,7 +142550,9 @@ "plasmid_name": "p3E LAP2b", "sequence-type": "addgene-full", "addgene_id": "105978", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30120238" + ], "kit": null, "file": "data/addgene_plasmids/105978.addgene-full.gb" }, @@ -113092,7 +142561,10 @@ "plasmid_name": "R702-X31-566: His6-MBP-tev-G-Hs.PDE6D(2-150)", "sequence-type": "addgene-full", "addgene_id": "159689", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1615316113", + "https://www.ncbi.nlm.nih.gov/pubmed/27791178" + ], "kit": null, "file": "data/addgene_plasmids/159689.addgene-full.gb" }, @@ -113101,7 +142573,10 @@ "plasmid_name": "pDONR223_ELF3_WT", "sequence-type": "addgene-full", "addgene_id": "82080", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -113113,7 +142588,10 @@ "plasmid_name": "R701-X21-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-188) G12D", "sequence-type": "addgene-full", "addgene_id": "159569", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159569.addgene-full.gb" }, @@ -113122,7 +142600,10 @@ "plasmid_name": "pDONR221_SLC25A2", "sequence-type": "addgene-full", "addgene_id": "132015", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132015.addgene-full.gb" }, @@ -113131,7 +142612,10 @@ "plasmid_name": "pENTR221-YAP1 CA", "sequence-type": "addgene-full", "addgene_id": "79502", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79502.addgene-full.gb" }, @@ -113140,7 +142624,10 @@ "plasmid_name": "pCPP5372", "sequence-type": "addgene-full", "addgene_id": "128733", - "references": [], + "references": [ + "https://doi.org/10.1128/JB.00998-07", + "https://www.ncbi.nlm.nih.gov/pubmed/17827286" + ], "kit": null, "file": "data/addgene_plasmids/128733.addgene-full.gb" }, @@ -113149,7 +142636,10 @@ "plasmid_name": "pHAGE-NTRK3__RBPMS", "sequence-type": "addgene-full", "addgene_id": "116829", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116829.addgene-full.gb" }, @@ -113158,7 +142648,10 @@ "plasmid_name": "pENTR1a-jAspSnFR3-mRuby3-NLS", "sequence-type": "addgene-full", "addgene_id": "203489", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "file": "data/addgene_plasmids/203489.addgene-full.gb" }, @@ -113167,7 +142660,6 @@ "plasmid_name": "R777-E293 Hs.RPS6KA3", "sequence-type": "depositor-full", "addgene_id": "70577", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -113179,7 +142671,10 @@ "plasmid_name": "pTORGm43GWY", "sequence-type": "addgene-full", "addgene_id": "112906", - "references": [], + "references": [ + "https://doi.org/10.1186/s12866-019-1642-0", + "https://www.ncbi.nlm.nih.gov/pubmed/31775609" + ], "kit": null, "file": "data/addgene_plasmids/112906.addgene-full.gb" }, @@ -113188,7 +142683,10 @@ "plasmid_name": "K202R-short-UBASH3A-V5-6xHis", "sequence-type": "addgene-full", "addgene_id": "195406", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/195406.addgene-full.gb" }, @@ -113197,7 +142695,10 @@ "plasmid_name": "pDONR223_POU5F1_WT", "sequence-type": "addgene-full", "addgene_id": "82154", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82154.addgene-full.gb" }, @@ -113206,7 +142707,10 @@ "plasmid_name": "pLCS104", "sequence-type": "addgene-full", "addgene_id": "209357", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209357.addgene-full.gb" }, @@ -113215,7 +142719,10 @@ "plasmid_name": "pAAV_2pabPAC(Y72L)", "sequence-type": "addgene-full", "addgene_id": "158970", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.0c00333", + "https://www.ncbi.nlm.nih.gov/pubmed/33074647" + ], "kit": null, "file": "data/addgene_plasmids/158970.addgene-full.gb" }, @@ -113224,7 +142731,10 @@ "plasmid_name": "pCW57.1-ZNF746-C571A", "sequence-type": "addgene-full", "addgene_id": "207826", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207826.addgene-full.gb" }, @@ -113233,7 +142743,10 @@ "plasmid_name": "pYPQ265E8", "sequence-type": "addgene-full", "addgene_id": "213471", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-024-49473-w", + "https://www.ncbi.nlm.nih.gov/pubmed/38877035" + ], "kit": null, "file": "data/addgene_plasmids/213471.addgene-full.gb" }, @@ -113242,7 +142755,10 @@ "plasmid_name": "pENTR D-TOPO-C3_10", "sequence-type": "addgene-full", "addgene_id": "60259", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60259.addgene-full.gb" }, @@ -113251,7 +142767,10 @@ "plasmid_name": "pDONR221_SLC7A7", "sequence-type": "addgene-full", "addgene_id": "132221", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132221.addgene-full.gb" }, @@ -113260,7 +142779,10 @@ "plasmid_name": "pPB-cT3G-cERP2-NR2F2", "sequence-type": "addgene-full", "addgene_id": "192900", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192900.addgene-full.gb" }, @@ -113269,7 +142791,10 @@ "plasmid_name": "AAEL007169 AstA R", "sequence-type": "addgene-full", "addgene_id": "115400", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115400.addgene-full.gb" }, @@ -113278,7 +142803,10 @@ "plasmid_name": "pHAGE-RAC1-P29L", "sequence-type": "addgene-full", "addgene_id": "116649", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116649.addgene-full.gb" }, @@ -113287,7 +142815,10 @@ "plasmid_name": "pENTR221 UBR5 \u2206PABC", "sequence-type": "depositor-full", "addgene_id": "81064", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "file": "data/addgene_plasmids/81064.depositor-full.gb" }, @@ -113296,7 +142827,10 @@ "plasmid_name": "C413-E33: attB4-UbCp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162925", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -113308,7 +142842,10 @@ "plasmid_name": "pCZGY847", "sequence-type": "addgene-full", "addgene_id": "135093", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.1000265", + "https://www.ncbi.nlm.nih.gov/pubmed/20027209" + ], "kit": null, "file": "data/addgene_plasmids/135093.addgene-full.gb" }, @@ -113317,7 +142854,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 366-852)", "sequence-type": "addgene-full", "addgene_id": "119315", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119315.addgene-full.gb" }, @@ -113326,7 +142866,10 @@ "plasmid_name": "pCellFree_G06_ZIKV PrM", "sequence-type": "addgene-full", "addgene_id": "145350", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145350.addgene-full.gb" }, @@ -113335,7 +142878,10 @@ "plasmid_name": "pDEST15-Eps8L2", "sequence-type": "addgene-full", "addgene_id": "196534", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196534.addgene-full.gb" }, @@ -113344,7 +142890,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0528-luc2", "sequence-type": "addgene-full", "addgene_id": "214658", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214658.addgene-full.gb" }, @@ -113353,7 +142902,10 @@ "plasmid_name": "pDONR221-SLC26A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161443", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161443.addgene-full.gb" }, @@ -113362,7 +142914,10 @@ "plasmid_name": "pENTR/D-Topo genomic A. thaliana IMPORTIN ALPHA 1", "sequence-type": "addgene-full", "addgene_id": "175814", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12691", + "https://www.ncbi.nlm.nih.gov/pubmed/25284001" + ], "kit": null, "file": "data/addgene_plasmids/175814.addgene-full.gb" }, @@ -113371,7 +142926,6 @@ "plasmid_name": "EEF1A2 - D252H in pENTR", "sequence-type": "addgene-full", "addgene_id": "216588", - "references": [], "kit": null, "file": "data/addgene_plasmids/216588.addgene-full.gb" }, @@ -113380,7 +142934,10 @@ "plasmid_name": "pDest_U6_A2_CG2_T2_gRNA", "sequence-type": "addgene-full", "addgene_id": "199388", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2022.111669", + "https://www.ncbi.nlm.nih.gov/pubmed/36384112" + ], "kit": null, "file": "data/addgene_plasmids/199388.addgene-full.gb" }, @@ -113389,7 +142946,10 @@ "plasmid_name": "pHAGE-PIK3CA-R108H", "sequence-type": "addgene-full", "addgene_id": "116532", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116532.addgene-full.gb" }, @@ -113398,7 +142958,10 @@ "plasmid_name": "pLD-puro-Cc-TARDBP-G368A_VA", "sequence-type": "addgene-full", "addgene_id": "141330", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2020.03.003", + "https://www.ncbi.nlm.nih.gov/pubmed/32325033" + ], "kit": null, "file": "data/addgene_plasmids/141330.addgene-full.gb" }, @@ -113407,7 +142970,9 @@ "plasmid_name": "pME-GAL4-ERT2-VP16", "sequence-type": "depositor-full", "addgene_id": "82588", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24643048" + ], "kit": null, "file": "data/addgene_plasmids/82588.depositor-full.gb" }, @@ -113416,7 +142981,10 @@ "plasmid_name": "pDONR221 Fpr3", "sequence-type": "depositor-full", "addgene_id": "63745", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63745.depositor-full.gb" }, @@ -113425,7 +142993,10 @@ "plasmid_name": "pCFJ2059 - [1-2] ENTR - Tag - Halo (intron(1), syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159872", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159872.addgene-full.gb" }, @@ -113434,7 +143005,10 @@ "plasmid_name": "DUX4 pDonor221", "sequence-type": "addgene-full", "addgene_id": "187801", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187801.addgene-full.gb" }, @@ -113443,7 +143017,10 @@ "plasmid_name": "pDONR223_MAGEC2_p.R287W", "sequence-type": "addgene-full", "addgene_id": "81386", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -113455,7 +143032,10 @@ "plasmid_name": "pB-6HIS-TEV-mEGFP,IRES-NGFR", "sequence-type": "addgene-full", "addgene_id": "164521", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.10.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33080218" + ], "kit": null, "file": "data/addgene_plasmids/164521.addgene-full.gb" }, @@ -113464,7 +143044,10 @@ "plasmid_name": "pDONRp5-p2 GFP-NShroom3-iLID", "sequence-type": "addgene-full", "addgene_id": "170976", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-33115-0", + "https://www.ncbi.nlm.nih.gov/pubmed/36104355" + ], "kit": null, "file": "data/addgene_plasmids/170976.addgene-full.gb" }, @@ -113473,7 +143056,6 @@ "plasmid_name": "pLEX307-APN-G418", "sequence-type": "addgene-full", "addgene_id": "158456", - "references": [], "kit": null, "file": "data/addgene_plasmids/158456.addgene-full.gb" }, @@ -113482,7 +143064,6 @@ "plasmid_name": "pLenti6.3_DTX1", "sequence-type": "addgene-full", "addgene_id": "124080", - "references": [], "kit": null, "file": "data/addgene_plasmids/124080.addgene-full.gb" }, @@ -113491,7 +143072,10 @@ "plasmid_name": "MAC_C_LAMP1", "sequence-type": "addgene-full", "addgene_id": "111669", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111669.addgene-full.gb" }, @@ -113500,7 +143084,10 @@ "plasmid_name": "pGWB542", "sequence-type": "depositor-full", "addgene_id": "74876", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74876.depositor-full.gb" }, @@ -113509,7 +143096,10 @@ "plasmid_name": "pcdna6.2- myc ULK1 4SA", "sequence-type": "addgene-full", "addgene_id": "27631", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1196371", + "https://www.ncbi.nlm.nih.gov/pubmed/21205641" + ], "kit": null, "file": "data/addgene_plasmids/27631.addgene-full.gb" }, @@ -113518,7 +143108,10 @@ "plasmid_name": "pRU321", "sequence-type": "addgene-full", "addgene_id": "167681", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167681.addgene-full.gb" }, @@ -113527,7 +143120,10 @@ "plasmid_name": "GFP-UBR5 \u2206HECT", "sequence-type": "depositor-full", "addgene_id": "52051", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.039", + "https://www.ncbi.nlm.nih.gov/pubmed/22884692" + ], "kit": null, "file": "data/addgene_plasmids/52051.depositor-full.gb" }, @@ -113536,7 +143132,10 @@ "plasmid_name": "pYPQ141B", "sequence-type": "depositor-full", "addgene_id": "69291", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69291.depositor-full.gb" }, @@ -113545,7 +143144,10 @@ "plasmid_name": "SIN-PGK-Cas9-V5-WPRE", "sequence-type": "depositor-full", "addgene_id": "87876", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87876.depositor-full.gb" }, @@ -113554,7 +143156,6 @@ "plasmid_name": "R777-E063 Hs.ETS1", "sequence-type": "depositor-full", "addgene_id": "70347", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -113566,7 +143167,10 @@ "plasmid_name": "pMx/ATP8A1-HA", "sequence-type": "addgene-full", "addgene_id": "209225", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209225.addgene-full.gb" }, @@ -113575,7 +143179,10 @@ "plasmid_name": "pHAGE-NOTCH2NL-Q172_G173delinsHC", "sequence-type": "addgene-full", "addgene_id": "116440", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116440.addgene-full.gb" }, @@ -113584,7 +143191,6 @@ "plasmid_name": "R777-E336 Hs.STK11-nostop", "sequence-type": "depositor-full", "addgene_id": "70620", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -113596,7 +143202,10 @@ "plasmid_name": "pSEM235 - [Pmlc-1 | mcherry | cbr-tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159900", - "references": [], + "references": [ + "https://doi.org/10.17912/micropub.biology.000302", + "https://www.ncbi.nlm.nih.gov/pubmed/32908967" + ], "kit": null, "file": "data/addgene_plasmids/159900.addgene-full.gb" }, @@ -113605,7 +143214,10 @@ "plasmid_name": "pENTR_Mm_CEP55(WT)", "sequence-type": "addgene-full", "addgene_id": "136333", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-05429-5", + "https://www.ncbi.nlm.nih.gov/pubmed/30069007" + ], "kit": null, "file": "data/addgene_plasmids/136333.addgene-full.gb" }, @@ -113614,7 +143226,10 @@ "plasmid_name": "pCFJ356 - MCS(cxTi10816, IV)", "sequence-type": "depositor-full", "addgene_id": "34871", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34871.depositor-full.gb" }, @@ -113623,7 +143238,10 @@ "plasmid_name": "R989-X27-636: His6-MBP-tev-G-Hs.KRAS4b(1-188) G12C", "sequence-type": "addgene-full", "addgene_id": "159554", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159554.addgene-full.gb" }, @@ -113632,7 +143250,10 @@ "plasmid_name": "LIIc F 3-4", "sequence-type": "depositor-full", "addgene_id": "54369", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54369.depositor-full.gb" }, @@ -113641,7 +143262,10 @@ "plasmid_name": "pCLX-pTF-R1-DEST-R2-EBR65", "sequence-type": "depositor-full", "addgene_id": "45952", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "file": "data/addgene_plasmids/45952.depositor-full.gb" }, @@ -113650,7 +143274,10 @@ "plasmid_name": "pHAGE-DUSP22__PTK7", "sequence-type": "addgene-full", "addgene_id": "116814", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116814.addgene-full.gb" }, @@ -113659,7 +143286,10 @@ "plasmid_name": "pDONR221_SLC25A29", "sequence-type": "addgene-full", "addgene_id": "132028", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132028.addgene-full.gb" }, @@ -113668,7 +143298,10 @@ "plasmid_name": "pME-6MTzactMap2k2b", "sequence-type": "depositor-full", "addgene_id": "67710", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "file": "data/addgene_plasmids/67710.depositor-full.gb" }, @@ -113677,7 +143310,10 @@ "plasmid_name": "pDONR223_GCET2_p.H177Q", "sequence-type": "addgene-full", "addgene_id": "81320", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -113689,7 +143325,10 @@ "plasmid_name": "pBS31-cCARLIN", "sequence-type": "addgene-full", "addgene_id": "160928", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2020.04.048", + "https://www.ncbi.nlm.nih.gov/pubmed/32413320" + ], "kit": null, "file": "data/addgene_plasmids/160928.addgene-full.gb" }, @@ -113698,7 +143337,6 @@ "plasmid_name": "R777-E209 Hs.RAC2", "sequence-type": "depositor-full", "addgene_id": "70493", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -113710,7 +143348,10 @@ "plasmid_name": "pAG424GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14320", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -113722,7 +143363,10 @@ "plasmid_name": "pHAGE-PIK3R1-H669Q", "sequence-type": "addgene-full", "addgene_id": "116594", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116594.addgene-full.gb" }, @@ -113731,7 +143375,10 @@ "plasmid_name": "pDONR-53BP1 1-1972 WT", "sequence-type": "addgene-full", "addgene_id": "53446", - "references": [], + "references": [ + "https://doi.org/10.1038/nature12318", + "https://www.ncbi.nlm.nih.gov/pubmed/23760478" + ], "kit": null, "file": "data/addgene_plasmids/53446.addgene-full.gb" }, @@ -113740,7 +143387,10 @@ "plasmid_name": "pHAGE-RHOA-Y42S", "sequence-type": "addgene-full", "addgene_id": "116674", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116674.addgene-full.gb" }, @@ -113749,7 +143399,10 @@ "plasmid_name": "pAAV-EF1a-DIO-mGFP-MutCREB(S133A)", "sequence-type": "addgene-full", "addgene_id": "194642", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-022-01223-1", + "https://www.ncbi.nlm.nih.gov/pubmed/36564546" + ], "kit": null, "file": "data/addgene_plasmids/194642.addgene-full.gb" }, @@ -113758,7 +143411,6 @@ "plasmid_name": "R777-E025 Hs.CDK6", "sequence-type": "depositor-full", "addgene_id": "70309", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -113770,7 +143422,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PSKH1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170584", - "references": [], "kit": null, "file": "data/addgene_plasmids/170584.addgene-full.gb" }, @@ -113779,7 +143430,10 @@ "plasmid_name": "pLenti GW V5 Eco/Dam hum LaminB1", "sequence-type": "addgene-full", "addgene_id": "182671", - "references": [], + "references": [ + "https://doi.org/10.1038/nature06947", + "https://www.ncbi.nlm.nih.gov/pubmed/18463634" + ], "kit": null, "file": "data/addgene_plasmids/182671.addgene-full.gb" }, @@ -113788,7 +143442,10 @@ "plasmid_name": "C239-E02: attB2r-IRES-ffLuc2-eGFP-pA-attB3", "sequence-type": "addgene-full", "addgene_id": "162918", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -113800,7 +143457,10 @@ "plasmid_name": "TFORF3539", "sequence-type": "depositor-full", "addgene_id": "145015", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145015.depositor-full.gb" }, @@ -113809,7 +143469,10 @@ "plasmid_name": "pDe_Cas9_KANA_R160a", "sequence-type": "addgene-full", "addgene_id": "173756", - "references": [], + "references": [ + "https://doi.org/10.1093/hr/uhac147", + "https://www.ncbi.nlm.nih.gov/pubmed/36072839" + ], "kit": null, "file": "data/addgene_plasmids/173756.addgene-full.gb" }, @@ -113818,7 +143481,10 @@ "plasmid_name": "pDONR223_HDAC1_WT", "sequence-type": "addgene-full", "addgene_id": "82212", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82212.addgene-full.gb" }, @@ -113827,7 +143493,10 @@ "plasmid_name": "pDCC5", "sequence-type": "depositor-full", "addgene_id": "59984", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.114.014126", + "https://www.ncbi.nlm.nih.gov/pubmed/25236734" + ], "kit": null, "file": "data/addgene_plasmids/59984.depositor-full.gb" }, @@ -113836,7 +143505,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0547-luc2", "sequence-type": "addgene-full", "addgene_id": "214665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214665.addgene-full.gb" }, @@ -113845,7 +143517,10 @@ "plasmid_name": "C455-E01: attB4-stuffer-attB5", "sequence-type": "addgene-full", "addgene_id": "162983", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -113857,7 +143532,10 @@ "plasmid_name": "Agrostemma_githago _LysRS_MitoTP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202656", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad163", + "https://www.ncbi.nlm.nih.gov/pubmed/37463427" + ], "kit": null, "file": "data/addgene_plasmids/202656.addgene-full.gb" }, @@ -113866,7 +143544,10 @@ "plasmid_name": "mpeg:Rab5c-stop-polyA; cmlc2:GFP", "sequence-type": "addgene-full", "addgene_id": "213737", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abp8321", + "https://www.ncbi.nlm.nih.gov/pubmed/36044568" + ], "kit": null, "file": "data/addgene_plasmids/213737.addgene-full.gb" }, @@ -113875,7 +143556,10 @@ "plasmid_name": "pDONR221_SLC45A3", "sequence-type": "addgene-full", "addgene_id": "132167", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132167.addgene-full.gb" }, @@ -113884,7 +143568,10 @@ "plasmid_name": "pSBDEST.Z", "sequence-type": "addgene-full", "addgene_id": "79470", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79470.addgene-full.gb" }, @@ -113893,7 +143580,10 @@ "plasmid_name": "pDONR221_SLC30A9", "sequence-type": "addgene-full", "addgene_id": "132287", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132287.addgene-full.gb" }, @@ -113902,7 +143592,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-let-7a-1", "sequence-type": "depositor-full", "addgene_id": "46670", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46670.depositor-full.gb" }, @@ -113911,7 +143604,10 @@ "plasmid_name": "MAC_C_INSR", "sequence-type": "addgene-full", "addgene_id": "187788", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187788.addgene-full.gb" }, @@ -113920,7 +143616,10 @@ "plasmid_name": "MAC_N_ETV6", "sequence-type": "addgene-full", "addgene_id": "167755", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167755.addgene-full.gb" }, @@ -113929,7 +143628,10 @@ "plasmid_name": "pDEST40-2XHA-wtSrc", "sequence-type": "addgene-full", "addgene_id": "140294", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140294.addgene-full.gb" }, @@ -113938,7 +143640,10 @@ "plasmid_name": "KCNE2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176980", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176980.addgene-full.gb" }, @@ -113947,7 +143652,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF3a", "sequence-type": "addgene-full", "addgene_id": "169390", - "references": [], "kit": null, "file": "data/addgene_plasmids/169390.addgene-full.gb" }, @@ -113956,7 +143660,10 @@ "plasmid_name": "pAG413GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14214", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -113968,7 +143675,10 @@ "plasmid_name": "pDONR223_STAT6_p.N417Y", "sequence-type": "addgene-full", "addgene_id": "81591", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -113980,7 +143690,10 @@ "plasmid_name": "pCAGGS-4493NES", "sequence-type": "addgene-full", "addgene_id": "138373", - "references": [], + "references": [ + "https://doi.org/10.1021/acssensors.9b01941", + "https://www.ncbi.nlm.nih.gov/pubmed/32101394" + ], "kit": null, "file": "data/addgene_plasmids/138373.addgene-full.gb" }, @@ -113989,7 +143702,10 @@ "plasmid_name": "pEBTet-SNAP-CP110", "sequence-type": "addgene-full", "addgene_id": "136802", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136802.addgene-full.gb" }, @@ -113998,7 +143714,10 @@ "plasmid_name": "pcDNA3.2/NS5-YFP", "sequence-type": "addgene-full", "addgene_id": "120831", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120831.addgene-full.gb" }, @@ -114007,7 +143726,10 @@ "plasmid_name": "p3E-rab24", "sequence-type": "addgene-full", "addgene_id": "109681", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109681.addgene-full.gb" }, @@ -114016,7 +143738,10 @@ "plasmid_name": "pDONR221_SLC10A6", "sequence-type": "addgene-full", "addgene_id": "131950", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131950.addgene-full.gb" }, @@ -114025,7 +143750,10 @@ "plasmid_name": "pDONR221-MAGT1_STOP", "sequence-type": "depositor-full", "addgene_id": "161468", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161468.depositor-full.gb" }, @@ -114034,7 +143762,10 @@ "plasmid_name": "pQLinkHD_EBFP2-ECFP", "sequence-type": "addgene-full", "addgene_id": "118854", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "file": "data/addgene_plasmids/118854.addgene-full.gb" }, @@ -114043,7 +143774,6 @@ "plasmid_name": "pEF 1-PNH-4", "sequence-type": "depositor-full", "addgene_id": "20083", - "references": [], "kit": null, "file": "data/addgene_plasmids/20083.depositor-full.gb" }, @@ -114052,7 +143782,10 @@ "plasmid_name": "pHAGE-ERBB2-A751T", "sequence-type": "addgene-full", "addgene_id": "116325", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116325.addgene-full.gb" }, @@ -114061,7 +143794,9 @@ "plasmid_name": "pMpGWB408", "sequence-type": "depositor-full", "addgene_id": "68673", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68673.depositor-full.gb" }, @@ -114070,7 +143805,10 @@ "plasmid_name": "TFORF3335", "sequence-type": "addgene-full", "addgene_id": "144811", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144811.addgene-full.gb" }, @@ -114079,7 +143817,10 @@ "plasmid_name": "pENTR D-TOPO-C3_38", "sequence-type": "depositor-full", "addgene_id": "60279", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60279.depositor-full.gb" }, @@ -114088,7 +143829,10 @@ "plasmid_name": "TFORF2969", "sequence-type": "addgene-full", "addgene_id": "144445", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144445.addgene-full.gb" }, @@ -114097,7 +143841,10 @@ "plasmid_name": "p3E-Bin1b", "sequence-type": "addgene-full", "addgene_id": "109561", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109561.addgene-full.gb" }, @@ -114106,7 +143853,6 @@ "plasmid_name": "pCLX-PGK-hTERT", "sequence-type": "addgene-full", "addgene_id": "114315", - "references": [], "kit": null, "file": "data/addgene_plasmids/114315.addgene-full.gb" }, @@ -114115,7 +143861,10 @@ "plasmid_name": "pDONR223_VHL_p.R161P", "sequence-type": "addgene-full", "addgene_id": "81671", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -114127,7 +143876,10 @@ "plasmid_name": "5'-3xFLAG Sap30bp-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212084", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212084.addgene-full.gb" }, @@ -114136,7 +143888,10 @@ "plasmid_name": "pDONR221 CARD8 PAM", "sequence-type": "addgene-full", "addgene_id": "169975", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169975.addgene-full.gb" }, @@ -114145,7 +143900,6 @@ "plasmid_name": "pCW57.1_V5_APEX_FLAG_Nt", "sequence-type": "addgene-full", "addgene_id": "194068", - "references": [], "kit": null, "file": "data/addgene_plasmids/194068.addgene-full.gb" }, @@ -114154,7 +143908,10 @@ "plasmid_name": "pDONR223 HCoV-229E NSP12_stop", "sequence-type": "addgene-full", "addgene_id": "168758", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168758.addgene-full.gb" }, @@ -114163,7 +143920,10 @@ "plasmid_name": "JDW 859 (pTol2-kdrl:V5-mScarlet-I-hsKRAS4A-G12V-ac/mC)", "sequence-type": "addgene-full", "addgene_id": "156416", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156416.addgene-full.gb" }, @@ -114172,7 +143932,9 @@ "plasmid_name": "pENTR-p14FAST", "sequence-type": "addgene-full", "addgene_id": "50025", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/25478005" + ], "kit": null, "file": "data/addgene_plasmids/50025.addgene-full.gb" }, @@ -114181,7 +143943,10 @@ "plasmid_name": "pMT mir-1-1 reporter hsa-mir-205", "sequence-type": "depositor-full", "addgene_id": "46744", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46744.depositor-full.gb" }, @@ -114190,7 +143955,10 @@ "plasmid_name": "IF101: pMVP (L1-L4) EF1a promoter", "sequence-type": "addgene-full", "addgene_id": "121687", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121687.addgene-full.gb" }, @@ -114199,7 +143967,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3B Q116P G120", "sequence-type": "addgene-full", "addgene_id": "129289", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129289.addgene-full.gb" }, @@ -114208,7 +143979,10 @@ "plasmid_name": "pDONR223_AKR1B1_p.F252L", "sequence-type": "addgene-full", "addgene_id": "82743", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82743.addgene-full.gb" }, @@ -114217,7 +143991,6 @@ "plasmid_name": "psp-161-si1(sigfp)", "sequence-type": "depositor-full", "addgene_id": "58801", - "references": [], "kit": null, "file": "data/addgene_plasmids/58801.depositor-full.gb" }, @@ -114226,7 +143999,10 @@ "plasmid_name": "pEntry_HCoV-OC43-nsp10", "sequence-type": "addgene-full", "addgene_id": "168938", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168938.addgene-full.gb" }, @@ -114235,7 +144011,10 @@ "plasmid_name": "pENTR-Creb5(T59/T61A)(HA)", "sequence-type": "addgene-full", "addgene_id": "195025", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "file": "data/addgene_plasmids/195025.addgene-full.gb" }, @@ -114244,7 +144023,10 @@ "plasmid_name": "PEP119T", "sequence-type": "addgene-full", "addgene_id": "98251", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.17.00047", + "https://www.ncbi.nlm.nih.gov/pubmed/28619883" + ], "kit": null, "file": "data/addgene_plasmids/98251.addgene-full.gb" }, @@ -114253,7 +144035,10 @@ "plasmid_name": "pEN_TTmiRC2_3xflag_Luciferase", "sequence-type": "addgene-full", "addgene_id": "136519", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136519.addgene-full.gb" }, @@ -114262,7 +144047,10 @@ "plasmid_name": "A1-LCD+8D", "sequence-type": "addgene-full", "addgene_id": "178674", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178674.addgene-full.gb" }, @@ -114271,7 +144059,10 @@ "plasmid_name": "A1-LCD Aro-", "sequence-type": "addgene-full", "addgene_id": "169715", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw8653", + "https://www.ncbi.nlm.nih.gov/pubmed/32029630" + ], "kit": null, "file": "data/addgene_plasmids/169715.addgene-full.gb" }, @@ -114280,7 +144071,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.S33N", "sequence-type": "addgene-full", "addgene_id": "82923", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82923.addgene-full.gb" }, @@ -114289,7 +144083,10 @@ "plasmid_name": "IX301: pMVP (L3-L2) myc epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121753", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121753.addgene-full.gb" }, @@ -114298,7 +144095,10 @@ "plasmid_name": "pEN_TT 3xFLAG-KIF20A", "sequence-type": "addgene-full", "addgene_id": "192297", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192297.addgene-full.gb" }, @@ -114307,7 +144107,6 @@ "plasmid_name": "His SUMO TEV SPOP 1-374", "sequence-type": "addgene-full", "addgene_id": "197015", - "references": [], "kit": null, "file": "data/addgene_plasmids/197015.addgene-full.gb" }, @@ -114316,7 +144115,10 @@ "plasmid_name": "TFORF3195", "sequence-type": "addgene-full", "addgene_id": "144671", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144671.addgene-full.gb" }, @@ -114325,7 +144127,10 @@ "plasmid_name": "p3E-Rab31", "sequence-type": "addgene-full", "addgene_id": "109755", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109755.addgene-full.gb" }, @@ -114334,7 +144139,6 @@ "plasmid_name": "pFRT-DestFLAGHA_RNAseH1", "sequence-type": "addgene-full", "addgene_id": "65783", - "references": [], "kit": null, "file": "data/addgene_plasmids/65783.addgene-full.gb" }, @@ -114343,7 +144147,10 @@ "plasmid_name": "pDONR221_SLC11A2", "sequence-type": "addgene-full", "addgene_id": "131884", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131884.addgene-full.gb" }, @@ -114352,7 +144159,10 @@ "plasmid_name": "pX458-Dual-Guide-Donor-ShuttleOnly", "sequence-type": "addgene-full", "addgene_id": "171098", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/171098.addgene-full.gb" }, @@ -114361,7 +144171,10 @@ "plasmid_name": "pAC1801_pmax-dCasRx", "sequence-type": "addgene-full", "addgene_id": "118634", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118634.addgene-full.gb" }, @@ -114370,7 +144183,10 @@ "plasmid_name": "pFLAG/HA-MOV10", "sequence-type": "addgene-full", "addgene_id": "10976", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2005.10.048", + "https://www.ncbi.nlm.nih.gov/pubmed/16289642" + ], "kit": null, "file": "data/addgene_plasmids/10976.addgene-full.gb" }, @@ -114379,7 +144195,10 @@ "plasmid_name": "pcDNA3-IKZF1-V2-V5", "sequence-type": "addgene-full", "addgene_id": "107390", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107390.addgene-full.gb" }, @@ -114388,7 +144207,10 @@ "plasmid_name": "pDONR223_ZNF454_p.H462Y", "sequence-type": "addgene-full", "addgene_id": "81445", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -114400,7 +144222,10 @@ "plasmid_name": "pLX-EF1a_GFP_CdTag-HA", "sequence-type": "addgene-full", "addgene_id": "221492", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221492.addgene-full.gb" }, @@ -114409,7 +144234,10 @@ "plasmid_name": "pCW-eGFP-FHA-SHLD2", "sequence-type": "addgene-full", "addgene_id": "114121", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "file": "data/addgene_plasmids/114121.addgene-full.gb" }, @@ -114418,7 +144246,10 @@ "plasmid_name": "pDONR221-SLC44A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161380", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161380.addgene-full.gb" }, @@ -114427,7 +144258,10 @@ "plasmid_name": "pDONR223_PPP6C_WT", "sequence-type": "addgene-full", "addgene_id": "81811", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -114439,7 +144273,6 @@ "plasmid_name": "pDONR223 ERFlux (Bip-HaloTag7-mGFP-KDEL-STOP)", "sequence-type": "addgene-full", "addgene_id": "215002", - "references": [], "kit": null, "file": "data/addgene_plasmids/215002.addgene-full.gb" }, @@ -114448,7 +144281,10 @@ "plasmid_name": "pcDNA3.2-Cx43-HA", "sequence-type": "addgene-full", "addgene_id": "49851", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2013.10.009", + "https://www.ncbi.nlm.nih.gov/pubmed/24210816" + ], "kit": null, "file": "data/addgene_plasmids/49851.addgene-full.gb" }, @@ -114457,7 +144293,10 @@ "plasmid_name": "pHAGE-ALK-R1275Q", "sequence-type": "addgene-full", "addgene_id": "116111", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116111.addgene-full.gb" }, @@ -114466,7 +144305,10 @@ "plasmid_name": "TFORF3115", "sequence-type": "addgene-full", "addgene_id": "144591", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144591.addgene-full.gb" }, @@ -114475,7 +144317,10 @@ "plasmid_name": "pMOS011: superecliptic pHluorin (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163050", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163050.addgene-full.gb" }, @@ -114484,7 +144329,10 @@ "plasmid_name": "pDONR223 SCAF8_isoD_CRISPR_resistant", "sequence-type": "addgene-full", "addgene_id": "122468", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.04.038", + "https://www.ncbi.nlm.nih.gov/pubmed/31104839" + ], "kit": null, "file": "data/addgene_plasmids/122468.addgene-full.gb" }, @@ -114493,7 +144341,10 @@ "plasmid_name": "pDONR221-SLC22A16_STOP", "sequence-type": "addgene-full", "addgene_id": "161189", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161189.addgene-full.gb" }, @@ -114502,7 +144353,10 @@ "plasmid_name": "pDONR223_BRAF_p.P367R", "sequence-type": "addgene-full", "addgene_id": "82851", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82851.addgene-full.gb" }, @@ -114511,7 +144365,10 @@ "plasmid_name": "pMuLE ENTR U6-miR-30 L1-L4", "sequence-type": "depositor-full", "addgene_id": "62114", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62114.depositor-full.gb" }, @@ -114520,7 +144377,10 @@ "plasmid_name": "TFORF3322", "sequence-type": "addgene-full", "addgene_id": "144798", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144798.addgene-full.gb" }, @@ -114529,7 +144389,6 @@ "plasmid_name": "R777-E159 Hs.PDPK1", "sequence-type": "depositor-full", "addgene_id": "70443", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -114541,7 +144400,10 @@ "plasmid_name": "pLX317-VRK2-K168E", "sequence-type": "addgene-full", "addgene_id": "199642", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.158755", + "https://www.ncbi.nlm.nih.gov/pubmed/36040810" + ], "kit": null, "file": "data/addgene_plasmids/199642.addgene-full.gb" }, @@ -114550,7 +144412,10 @@ "plasmid_name": "TFORF3002", "sequence-type": "addgene-full", "addgene_id": "144478", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144478.addgene-full.gb" }, @@ -114559,7 +144424,10 @@ "plasmid_name": "Ad-SNRK", "sequence-type": "addgene-full", "addgene_id": "131539", - "references": [], + "references": [ + "https://doi.org/10.2337/db12-1081", + "https://www.ncbi.nlm.nih.gov/pubmed/23520131" + ], "kit": null, "file": "data/addgene_plasmids/131539.addgene-full.gb" }, @@ -114568,7 +144436,10 @@ "plasmid_name": "pDONR221-SLC2A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161269", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161269.addgene-full.gb" }, @@ -114577,7 +144448,10 @@ "plasmid_name": "pDONR221-kcnj12a", "sequence-type": "addgene-full", "addgene_id": "173141", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173141.addgene-full.gb" }, @@ -114586,7 +144460,10 @@ "plasmid_name": "BCL2L1_pLX307", "sequence-type": "addgene-full", "addgene_id": "98323", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98323.addgene-full.gb" }, @@ -114595,7 +144472,9 @@ "plasmid_name": "p5E-dr_Unc (JDW 1365)", "sequence-type": "addgene-full", "addgene_id": "224482", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224482.addgene-full.gb" }, @@ -114604,7 +144483,10 @@ "plasmid_name": "pDONR221-ZNF705A", "sequence-type": "depositor-full", "addgene_id": "101414", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101414.depositor-full.gb" }, @@ -114613,7 +144495,10 @@ "plasmid_name": "pDONR223_GNA13_WT", "sequence-type": "addgene-full", "addgene_id": "81963", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -114625,7 +144510,10 @@ "plasmid_name": "pcDNA3.2/V5 hsa-mir-150", "sequence-type": "addgene-full", "addgene_id": "26310", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.1884710", + "https://www.ncbi.nlm.nih.gov/pubmed/20413612" + ], "kit": null, "file": "data/addgene_plasmids/26310.addgene-full.gb" }, @@ -114634,7 +144522,10 @@ "plasmid_name": "pHAGE-FGFR3-E360Q", "sequence-type": "addgene-full", "addgene_id": "116383", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116383.addgene-full.gb" }, @@ -114643,7 +144534,10 @@ "plasmid_name": "pDEST-V1-ORF", "sequence-type": "depositor-full", "addgene_id": "73635", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaf0793", + "https://www.ncbi.nlm.nih.gov/pubmed/27405979" + ], "kit": null, "file": "data/addgene_plasmids/73635.depositor-full.gb" }, @@ -114652,7 +144546,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-Envelope", "sequence-type": "depositor-full", "addgene_id": "168904", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168904.depositor-full.gb" }, @@ -114661,7 +144558,10 @@ "plasmid_name": "pDON223 Spike D138Y", "sequence-type": "addgene-full", "addgene_id": "180056", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/180056.addgene-full.gb" }, @@ -114670,7 +144570,10 @@ "plasmid_name": "TFORF3227", "sequence-type": "addgene-full", "addgene_id": "144703", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144703.addgene-full.gb" }, @@ -114679,7 +144582,10 @@ "plasmid_name": "pIE2-DBD", "sequence-type": "depositor-full", "addgene_id": "21602", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ab.2009.05.033", + "https://www.ncbi.nlm.nih.gov/pubmed/19481053" + ], "kit": null, "file": "data/addgene_plasmids/21602.depositor-full.gb" }, @@ -114688,7 +144594,10 @@ "plasmid_name": "pDONR223_STAT6_p.D46N", "sequence-type": "addgene-full", "addgene_id": "81537", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -114700,7 +144609,10 @@ "plasmid_name": "pDONR221-SLC16A10_STOP", "sequence-type": "addgene-full", "addgene_id": "161112", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161112.addgene-full.gb" }, @@ -114709,7 +144621,10 @@ "plasmid_name": "pAG424-ccdB", "sequence-type": "depositor-full", "addgene_id": "70124", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.061788.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29212664" + ], "kit": null, "file": "data/addgene_plasmids/70124.depositor-full.gb" }, @@ -114718,7 +144633,10 @@ "plasmid_name": "TFORF3061", "sequence-type": "addgene-full", "addgene_id": "144537", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144537.addgene-full.gb" }, @@ -114727,7 +144645,10 @@ "plasmid_name": "pAM94", "sequence-type": "addgene-full", "addgene_id": "226686", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226686.addgene-full.gb" }, @@ -114736,7 +144657,10 @@ "plasmid_name": "PB-TAC-WTSI", "sequence-type": "depositor-full", "addgene_id": "80486", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "file": "data/addgene_plasmids/80486.depositor-full.gb" }, @@ -114745,7 +144669,10 @@ "plasmid_name": "pEN_TTmiRc2_BirA_NRF2", "sequence-type": "addgene-full", "addgene_id": "136524", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136524.addgene-full.gb" }, @@ -114754,7 +144681,10 @@ "plasmid_name": "pcDNA6.2EmGFP-cDAXX-0SB", "sequence-type": "addgene-full", "addgene_id": "169728", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169728.addgene-full.gb" }, @@ -114763,7 +144693,10 @@ "plasmid_name": "pDONR221-SLC6A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161326", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161326.addgene-full.gb" }, @@ -114772,7 +144705,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.P124S", "sequence-type": "addgene-full", "addgene_id": "81703", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -114784,7 +144720,10 @@ "plasmid_name": "pKOR1", "sequence-type": "addgene-full", "addgene_id": "133446", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2005.05.005", + "https://www.ncbi.nlm.nih.gov/pubmed/16051359" + ], "kit": null, "file": "data/addgene_plasmids/133446.addgene-full.gb" }, @@ -114793,7 +144732,10 @@ "plasmid_name": "343 pTol2-fli1epDest", "sequence-type": "depositor-full", "addgene_id": "73486", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/73486.depositor-full.gb" }, @@ -114802,7 +144744,9 @@ "plasmid_name": "pFLIP39", "sequence-type": "depositor-full", "addgene_id": "65507", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24737862" + ], "kit": null, "file": "data/addgene_plasmids/65507.depositor-full.gb" }, @@ -114811,7 +144755,10 @@ "plasmid_name": "pENTR223-EBNA3B", "sequence-type": "addgene-full", "addgene_id": "198574", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198574.addgene-full.gb" }, @@ -114820,7 +144767,10 @@ "plasmid_name": "pDONR223-ZNF277", "sequence-type": "addgene-full", "addgene_id": "88174", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88174.addgene-full.gb" }, @@ -114829,7 +144779,10 @@ "plasmid_name": "TFORF3487", "sequence-type": "addgene-full", "addgene_id": "144963", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144963.addgene-full.gb" }, @@ -114838,7 +144791,9 @@ "plasmid_name": "pDONR221-PABPN1(v1)", "sequence-type": "addgene-full", "addgene_id": "166194", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166194.addgene-full.gb" }, @@ -114847,7 +144802,6 @@ "plasmid_name": "R777-E113 Hs.JUN", "sequence-type": "depositor-full", "addgene_id": "70397", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -114859,7 +144813,10 @@ "plasmid_name": "pExp_CAG:EBFP2", "sequence-type": "depositor-full", "addgene_id": "51790", - "references": [], + "references": [ + "https://doi.org/10.1021/sb500263b", + "https://www.ncbi.nlm.nih.gov/pubmed/25369267" + ], "kit": null, "file": "data/addgene_plasmids/51790.depositor-full.gb" }, @@ -114868,7 +144825,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP9_stop", "sequence-type": "addgene-full", "addgene_id": "168551", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168551.addgene-full.gb" }, @@ -114877,7 +144837,10 @@ "plasmid_name": "RBM38", "sequence-type": "addgene-full", "addgene_id": "155899", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155899.addgene-full.gb" }, @@ -114886,7 +144849,10 @@ "plasmid_name": "pT3TS_Transposase", "sequence-type": "addgene-full", "addgene_id": "109768", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109768.addgene-full.gb" }, @@ -114895,7 +144861,10 @@ "plasmid_name": "p5E-gfap", "sequence-type": "depositor-full", "addgene_id": "75024", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -114907,7 +144876,10 @@ "plasmid_name": "pLKO.DEST.YFP", "sequence-type": "depositor-full", "addgene_id": "32683", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "file": "data/addgene_plasmids/32683.depositor-full.gb" }, @@ -114916,7 +144888,10 @@ "plasmid_name": "pDONR223_SLC2A3_p.G109V", "sequence-type": "addgene-full", "addgene_id": "81478", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -114928,7 +144903,10 @@ "plasmid_name": "pAG414GAL-ccdB", "sequence-type": "depositor-full", "addgene_id": "14143", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -114940,7 +144918,10 @@ "plasmid_name": "pCR8_TtNAM-B1(1-215)", "sequence-type": "addgene-full", "addgene_id": "124577", - "references": [], + "references": [ + "https://doi.org/10.1186/s12870-019-2022-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31533618" + ], "kit": null, "file": "data/addgene_plasmids/124577.addgene-full.gb" }, @@ -114949,7 +144930,10 @@ "plasmid_name": "JI501: pMAGIC (L3-L2) 3x HA epitope tag + polyA; hU6::SaCas9 gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121841", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121841.addgene-full.gb" }, @@ -114958,7 +144942,10 @@ "plasmid_name": "pDONR223_NFIL3_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82985", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82985.addgene-full.gb" }, @@ -114967,7 +144954,6 @@ "plasmid_name": "pENTR ARRET", "sequence-type": "depositor-full", "addgene_id": "111384", - "references": [], "kit": null, "file": "data/addgene_plasmids/111384.depositor-full.gb" }, @@ -114976,7 +144962,10 @@ "plasmid_name": "pDONR223_STK11_WT", "sequence-type": "addgene-full", "addgene_id": "81798", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81798.addgene-full.gb" }, @@ -114985,7 +144974,10 @@ "plasmid_name": "actc1b-mKate2-CaaX(tK)", "sequence-type": "addgene-full", "addgene_id": "109488", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109488.addgene-full.gb" }, @@ -114994,7 +144986,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF3B_nostop", "sequence-type": "addgene-full", "addgene_id": "149320", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149320.addgene-full.gb" }, @@ -115003,7 +144998,10 @@ "plasmid_name": "phGf", "sequence-type": "depositor-full", "addgene_id": "22516", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.ppat.1000578", + "https://www.ncbi.nlm.nih.gov/pubmed/19750217" + ], "kit": null, "file": "data/addgene_plasmids/22516.depositor-full.gb" }, @@ -115012,7 +145010,10 @@ "plasmid_name": "pMXs-OLIG2", "sequence-type": "addgene-full", "addgene_id": "134668", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199723", + "https://www.ncbi.nlm.nih.gov/pubmed/35748297" + ], "kit": null, "file": "data/addgene_plasmids/134668.addgene-full.gb" }, @@ -115021,7 +145022,10 @@ "plasmid_name": "pUBQ10:LYK5_At-3xHA", "sequence-type": "addgene-full", "addgene_id": "202192", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad263", + "https://www.ncbi.nlm.nih.gov/pubmed/37144828" + ], "kit": null, "file": "data/addgene_plasmids/202192.addgene-full.gb" }, @@ -115030,7 +145034,10 @@ "plasmid_name": "p16 nlsGPS1", "sequence-type": "addgene-full", "addgene_id": "101081", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-017-0021-9", + "https://www.ncbi.nlm.nih.gov/pubmed/28970478" + ], "kit": null, "file": "data/addgene_plasmids/101081.addgene-full.gb" }, @@ -115039,7 +145046,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF9B_nostop", "sequence-type": "addgene-full", "addgene_id": "149327", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149327.addgene-full.gb" }, @@ -115048,7 +145058,10 @@ "plasmid_name": "pME-APEX2-mCherry", "sequence-type": "addgene-full", "addgene_id": "188944", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.64835", + "https://www.ncbi.nlm.nih.gov/pubmed/35943143" + ], "kit": null, "file": "data/addgene_plasmids/188944.addgene-full.gb" }, @@ -115057,7 +145070,6 @@ "plasmid_name": "pBABEpuro-CRAF_S257W", "sequence-type": "depositor-full", "addgene_id": "51126", - "references": [], "kit": null, "file": "data/addgene_plasmids/51126.depositor-full.gb" }, @@ -115066,7 +145078,6 @@ "plasmid_name": "R777-E237 Hs.RASAL3", "sequence-type": "depositor-full", "addgene_id": "70521", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -115078,7 +145089,10 @@ "plasmid_name": "pAG416GPD-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14292", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -115090,7 +145104,10 @@ "plasmid_name": "Lenti-2XPRE-GFP", "sequence-type": "addgene-full", "addgene_id": "206169", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "file": "data/addgene_plasmids/206169.addgene-full.gb" }, @@ -115099,7 +145116,10 @@ "plasmid_name": "pCellFree_G04", "sequence-type": "depositor-full", "addgene_id": "67138", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "file": "data/addgene_plasmids/67138.depositor-full.gb" }, @@ -115108,7 +145128,10 @@ "plasmid_name": "pLX_HA-C7orf26v1", "sequence-type": "addgene-full", "addgene_id": "178535", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.12.005", + "https://www.ncbi.nlm.nih.gov/pubmed/35085500" + ], "kit": null, "file": "data/addgene_plasmids/178535.addgene-full.gb" }, @@ -115117,7 +145140,10 @@ "plasmid_name": "JH401: pMVP/Ad/RGD-PK-DEST", "sequence-type": "addgene-full", "addgene_id": "121846", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121846.addgene-full.gb" }, @@ -115126,7 +145152,10 @@ "plasmid_name": "pPN459", "sequence-type": "addgene-full", "addgene_id": "137875", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-57500-1", + "https://www.ncbi.nlm.nih.gov/pubmed/31959800" + ], "kit": null, "file": "data/addgene_plasmids/137875.addgene-full.gb" }, @@ -115135,7 +145164,10 @@ "plasmid_name": "pEN_TT 3XFLAG-S37A-GATA6-3XAU1", "sequence-type": "addgene-full", "addgene_id": "72613", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aad3373", + "https://www.ncbi.nlm.nih.gov/pubmed/27273097" + ], "kit": null, "file": "data/addgene_plasmids/72613.addgene-full.gb" }, @@ -115144,7 +145176,6 @@ "plasmid_name": "HCP6", "sequence-type": "addgene-full", "addgene_id": "166108", - "references": [], "kit": null, "file": "data/addgene_plasmids/166108.addgene-full.gb" }, @@ -115153,7 +145184,9 @@ "plasmid_name": "pDONR221-NOP58", "sequence-type": "addgene-full", "addgene_id": "166193", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166193.addgene-full.gb" }, @@ -115162,7 +145195,10 @@ "plasmid_name": "TFORF3488", "sequence-type": "addgene-full", "addgene_id": "144964", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144964.addgene-full.gb" }, @@ -115171,7 +145207,10 @@ "plasmid_name": "PABPC1", "sequence-type": "addgene-full", "addgene_id": "155805", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155805.addgene-full.gb" }, @@ -115180,7 +145219,10 @@ "plasmid_name": "pSAM2_mCherry_Tbx5", "sequence-type": "addgene-full", "addgene_id": "72688", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72688.addgene-full.gb" }, @@ -115189,7 +145231,10 @@ "plasmid_name": "pHAGE-N-FLAG-HA-TBK1", "sequence-type": "addgene-full", "addgene_id": "131791", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.08.085", + "https://www.ncbi.nlm.nih.gov/pubmed/31577952" + ], "kit": null, "file": "data/addgene_plasmids/131791.addgene-full.gb" }, @@ -115198,7 +145243,10 @@ "plasmid_name": "pHAGE-EGFR-G588S", "sequence-type": "addgene-full", "addgene_id": "116250", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116250.addgene-full.gb" }, @@ -115207,7 +145255,10 @@ "plasmid_name": "p6993 MSCV-Neo C-HA 18E7", "sequence-type": "addgene-full", "addgene_id": "163311", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "file": "data/addgene_plasmids/163311.addgene-full.gb" }, @@ -115216,7 +145267,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 NSP15_stop", "sequence-type": "addgene-full", "addgene_id": "168556", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168556.addgene-full.gb" }, @@ -115225,7 +145279,10 @@ "plasmid_name": "LC601: pMVP (L3-L2) eYFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121769", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121769.addgene-full.gb" }, @@ -115234,7 +145291,10 @@ "plasmid_name": "pDONR223_ZNF597_p.R247T", "sequence-type": "addgene-full", "addgene_id": "82919", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82919.addgene-full.gb" }, @@ -115243,7 +145303,9 @@ "plasmid_name": "pGWB402SN", "sequence-type": "addgene-full", "addgene_id": "224551", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.14.603419" + ], "kit": null, "file": "data/addgene_plasmids/224551.addgene-full.gb" }, @@ -115252,7 +145314,10 @@ "plasmid_name": "pEN_TTmiRc2_BirA_CDKN1A", "sequence-type": "addgene-full", "addgene_id": "136523", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136523.addgene-full.gb" }, @@ -115261,7 +145326,10 @@ "plasmid_name": "pCMU-PLAr", "sequence-type": "depositor-full", "addgene_id": "61200", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61200.depositor-full.gb" }, @@ -115270,7 +145338,10 @@ "plasmid_name": "pDONR221-SLC44A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161321", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161321.addgene-full.gb" }, @@ -115279,7 +145350,10 @@ "plasmid_name": "pDONR223_IDH1_p.E190K", "sequence-type": "addgene-full", "addgene_id": "81704", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -115291,7 +145365,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp1", "sequence-type": "depositor-full", "addgene_id": "168866", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168866.depositor-full.gb" }, @@ -115300,7 +145377,10 @@ "plasmid_name": "TFORF3054", "sequence-type": "addgene-full", "addgene_id": "144530", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144530.addgene-full.gb" }, @@ -115309,7 +145389,10 @@ "plasmid_name": "pcw107", "sequence-type": "depositor-full", "addgene_id": "62511", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/62511.depositor-full.gb" }, @@ -115318,7 +145401,10 @@ "plasmid_name": "pAM89", "sequence-type": "addgene-full", "addgene_id": "226681", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226681.addgene-full.gb" }, @@ -115327,7 +145413,10 @@ "plasmid_name": "pDONR223_KEAP1_p.G524C", "sequence-type": "addgene-full", "addgene_id": "82779", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82779.addgene-full.gb" }, @@ -115336,7 +145425,10 @@ "plasmid_name": "pDONR221-SLCO2A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161115", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161115.addgene-full.gb" }, @@ -115345,7 +145437,10 @@ "plasmid_name": "pcDNA3.2/V5 hsa-mir-9-1", "sequence-type": "addgene-full", "addgene_id": "26317", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.1884710", + "https://www.ncbi.nlm.nih.gov/pubmed/20413612" + ], "kit": null, "file": "data/addgene_plasmids/26317.addgene-full.gb" }, @@ -115354,7 +145449,10 @@ "plasmid_name": "pHAGE-FGFR3-R124W", "sequence-type": "addgene-full", "addgene_id": "116384", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116384.addgene-full.gb" }, @@ -115363,7 +145461,10 @@ "plasmid_name": "TFORF3228", "sequence-type": "addgene-full", "addgene_id": "144704", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144704.addgene-full.gb" }, @@ -115372,7 +145473,10 @@ "plasmid_name": "actc1b-mKate2-rab30", "sequence-type": "addgene-full", "addgene_id": "109620", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109620.addgene-full.gb" }, @@ -115381,7 +145485,6 @@ "plasmid_name": "pAM-35s-CIPK5-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102387", - "references": [], "kit": null, "file": "data/addgene_plasmids/102387.addgene-full.gb" }, @@ -115390,7 +145493,10 @@ "plasmid_name": "pDONR221-WT-short-UBASH3A-Ctag", "sequence-type": "addgene-full", "addgene_id": "192099", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/192099.addgene-full.gb" }, @@ -115399,7 +145505,10 @@ "plasmid_name": "pGMCtKq28-TSC10M1-sspB", "sequence-type": "depositor-full", "addgene_id": "49526", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "file": "data/addgene_plasmids/49526.depositor-full.gb" }, @@ -115408,7 +145517,9 @@ "plasmid_name": "pME AmCyan (JDW 1151)", "sequence-type": "addgene-full", "addgene_id": "224485", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224485.addgene-full.gb" }, @@ -115417,7 +145528,10 @@ "plasmid_name": "pDONR223_STAG2_WT", "sequence-type": "addgene-full", "addgene_id": "81964", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -115429,7 +145543,9 @@ "plasmid_name": "pLentiN HPV8 E6 K142A", "sequence-type": "addgene-full", "addgene_id": "87680", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28107544" + ], "kit": null, "file": "data/addgene_plasmids/87680.addgene-full.gb" }, @@ -115438,7 +145554,10 @@ "plasmid_name": "pENTR-D-kcnj16", "sequence-type": "addgene-full", "addgene_id": "173146", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173146.addgene-full.gb" }, @@ -115447,7 +145566,10 @@ "plasmid_name": "CDK9_pLX307", "sequence-type": "addgene-full", "addgene_id": "98324", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98324.addgene-full.gb" }, @@ -115456,7 +145578,9 @@ "plasmid_name": "pDRf1-4CL5-AtSDT (JBEI-11535)", "sequence-type": "addgene-full", "addgene_id": "87934", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27871334" + ], "kit": null, "file": "data/addgene_plasmids/87934.addgene-full.gb" }, @@ -115465,7 +145589,6 @@ "plasmid_name": "p667-UBC-ADCK5-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189909", - "references": [], "kit": null, "file": "data/addgene_plasmids/189909.addgene-full.gb" }, @@ -115474,7 +145597,10 @@ "plasmid_name": "pDONR-TIR1", "sequence-type": "depositor-full", "addgene_id": "83875", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83875.depositor-full.gb" }, @@ -115483,7 +145609,9 @@ "plasmid_name": "p3E-YFP-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82590", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82590.depositor-full.gb" }, @@ -115492,7 +145620,10 @@ "plasmid_name": "pEntry_MERS-CoV-ORF4a", "sequence-type": "depositor-full", "addgene_id": "168828", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168828.depositor-full.gb" }, @@ -115501,7 +145632,10 @@ "plasmid_name": "pStart-T2", "sequence-type": "addgene-full", "addgene_id": "20347", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "file": "data/addgene_plasmids/20347.addgene-full.gb" }, @@ -115510,7 +145644,10 @@ "plasmid_name": "p3E-APEX2-P2A-EGFP", "sequence-type": "addgene-full", "addgene_id": "108896", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pbio.2005473", + "https://www.ncbi.nlm.nih.gov/pubmed/29621251" + ], "kit": null, "file": "data/addgene_plasmids/108896.addgene-full.gb" }, @@ -115519,7 +145656,10 @@ "plasmid_name": "pEBTetBl-CLIP-HsSAS6", "sequence-type": "addgene-full", "addgene_id": "136838", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136838.addgene-full.gb" }, @@ -115528,7 +145668,10 @@ "plasmid_name": "pDONR223_TERT_p.L593F", "sequence-type": "addgene-full", "addgene_id": "82856", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82856.addgene-full.gb" }, @@ -115537,7 +145680,10 @@ "plasmid_name": "pMpGE006", "sequence-type": "addgene-full", "addgene_id": "108722", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0205117", + "https://www.ncbi.nlm.nih.gov/pubmed/30379827" + ], "kit": null, "file": "data/addgene_plasmids/108722.addgene-full.gb" }, @@ -115546,7 +145692,10 @@ "plasmid_name": "pGC160", "sequence-type": "depositor-full", "addgene_id": "19632", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19632.depositor-full.gb" }, @@ -115555,7 +145704,10 @@ "plasmid_name": "pHAGE-AXL-C311F", "sequence-type": "addgene-full", "addgene_id": "116116", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116116.addgene-full.gb" }, @@ -115564,7 +145716,10 @@ "plasmid_name": "pAG304GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14376", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -115576,7 +145731,10 @@ "plasmid_name": "TFORF3120", "sequence-type": "addgene-full", "addgene_id": "144596", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144596.addgene-full.gb" }, @@ -115585,7 +145743,10 @@ "plasmid_name": "pMOS012: Grx1-roGFP1-iE_ER glutathione redox sensor (endoplasmic reticulum)", "sequence-type": "addgene-full", "addgene_id": "163057", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163057.addgene-full.gb" }, @@ -115594,7 +145755,10 @@ "plasmid_name": "p3E_GGWDest-", "sequence-type": "depositor-full", "addgene_id": "49316", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -115606,7 +145770,10 @@ "plasmid_name": "pDONR223_GPS2_WT", "sequence-type": "addgene-full", "addgene_id": "81816", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -115618,7 +145785,10 @@ "plasmid_name": "pDONR221-SLC7A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161387", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161387.addgene-full.gb" }, @@ -115627,7 +145797,10 @@ "plasmid_name": "pLX307/PTPN11 T73I", "sequence-type": "addgene-full", "addgene_id": "140939", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-0209", + "https://www.ncbi.nlm.nih.gov/pubmed/31771968" + ], "kit": null, "file": "data/addgene_plasmids/140939.addgene-full.gb" }, @@ -115636,7 +145809,10 @@ "plasmid_name": "pDONR221-SLC1A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161067", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161067.addgene-full.gb" }, @@ -115645,7 +145821,10 @@ "plasmid_name": "pDONR223_COPS2_p.G68R", "sequence-type": "addgene-full", "addgene_id": "81442", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -115657,7 +145836,10 @@ "plasmid_name": "pCW-eGFP-SHLD3", "sequence-type": "addgene-full", "addgene_id": "114126", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "file": "data/addgene_plasmids/114126.addgene-full.gb" }, @@ -115666,7 +145848,10 @@ "plasmid_name": "TFORF3200", "sequence-type": "addgene-full", "addgene_id": "144676", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144676.addgene-full.gb" }, @@ -115675,7 +145860,10 @@ "plasmid_name": "pDONR221-SLC31A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161290", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161290.depositor-full.gb" }, @@ -115684,7 +145872,10 @@ "plasmid_name": "pDONR221_RHBG", "sequence-type": "addgene-full", "addgene_id": "131883", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131883.addgene-full.gb" }, @@ -115693,7 +145884,10 @@ "plasmid_name": "pBBR4pemIK-GW", "sequence-type": "addgene-full", "addgene_id": "126929", - "references": [], + "references": [ + "https://doi.org/10.1128/MRA.00769-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31488530" + ], "kit": null, "file": "data/addgene_plasmids/126929.addgene-full.gb" }, @@ -115702,7 +145896,10 @@ "plasmid_name": "pcDNA3-FLAG- gate-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107397", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107397.addgene-full.gb" }, @@ -115711,7 +145908,6 @@ "plasmid_name": "R777-E354 Hs.TSC1-nostop", "sequence-type": "depositor-full", "addgene_id": "70638", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -115723,7 +145919,10 @@ "plasmid_name": "pBi2FC-N-MPK6-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216137", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216137.addgene-full.gb" }, @@ -115732,7 +145931,10 @@ "plasmid_name": "PPIB", "sequence-type": "addgene-full", "addgene_id": "155838", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155838.addgene-full.gb" }, @@ -115741,7 +145943,10 @@ "plasmid_name": "pDONR223_GOPC_WT", "sequence-type": "addgene-full", "addgene_id": "82924", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82924.addgene-full.gb" }, @@ -115750,7 +145955,10 @@ "plasmid_name": "pDONR221-FOXD4L5", "sequence-type": "depositor-full", "addgene_id": "101492", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101492.depositor-full.gb" }, @@ -115759,7 +145967,10 @@ "plasmid_name": "IX401: pMVP (L3-L2) 6x His epitope tag + polyA", "sequence-type": "addgene-full", "addgene_id": "121754", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121754.addgene-full.gb" }, @@ -115768,7 +145979,10 @@ "plasmid_name": "pDONR223_RHOA_WT", "sequence-type": "addgene-full", "addgene_id": "81739", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -115780,7 +145994,10 @@ "plasmid_name": "pENTR-Creb5(HA)", "sequence-type": "addgene-full", "addgene_id": "195022", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-01857-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33712729" + ], "kit": null, "file": "data/addgene_plasmids/195022.addgene-full.gb" }, @@ -115789,7 +146006,10 @@ "plasmid_name": "A1-LCD+4D", "sequence-type": "addgene-full", "addgene_id": "178673", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178673.addgene-full.gb" }, @@ -115798,7 +146018,10 @@ "plasmid_name": "p{Mhc-F4-678-DsRed::KD,attB}", "sequence-type": "addgene-full", "addgene_id": "182188", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182188.addgene-full.gb" }, @@ -115807,7 +146030,10 @@ "plasmid_name": "Ash1-5p", "sequence-type": "addgene-full", "addgene_id": "169712", - "references": [], + "references": [ + "https://doi.org/10.1021/jacs.6b10272", + "https://www.ncbi.nlm.nih.gov/pubmed/27807972" + ], "kit": null, "file": "data/addgene_plasmids/169712.addgene-full.gb" }, @@ -115816,7 +146042,10 @@ "plasmid_name": "pLEX307-Bat-CoV-HKU9-3CL-C144A", "sequence-type": "addgene-full", "addgene_id": "160285", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.02374-20", + "https://www.ncbi.nlm.nih.gov/pubmed/33910954" + ], "kit": null, "file": "data/addgene_plasmids/160285.addgene-full.gb" }, @@ -115825,7 +146054,10 @@ "plasmid_name": "pCFJ353 - MCS(ttTi4391, I)", "sequence-type": "depositor-full", "addgene_id": "34869", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34869.depositor-full.gb" }, @@ -115834,7 +146066,10 @@ "plasmid_name": "LIIc F 4-5", "sequence-type": "depositor-full", "addgene_id": "54371", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54371.depositor-full.gb" }, @@ -115843,7 +146078,10 @@ "plasmid_name": "pTKan-p35S::Csy4-pNOS::cogRFP (C134, JBEI-15901)", "sequence-type": "addgene-full", "addgene_id": "110146", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.6b00295", + "https://www.ncbi.nlm.nih.gov/pubmed/28094975" + ], "kit": null, "file": "data/addgene_plasmids/110146.addgene-full.gb" }, @@ -115852,7 +146090,10 @@ "plasmid_name": "pGWB426", "sequence-type": "depositor-full", "addgene_id": "74820", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74820.depositor-full.gb" }, @@ -115861,7 +146102,10 @@ "plasmid_name": "pDONR221-SLC1A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161128", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161128.addgene-full.gb" }, @@ -115870,7 +146114,10 @@ "plasmid_name": "pAG415GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14338", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -115882,7 +146129,10 @@ "plasmid_name": "MLKS2ec", "sequence-type": "addgene-full", "addgene_id": "130855", - "references": [], + "references": [ + "https://doi.org/10.1080/19491034.2019.1629795", + "https://www.ncbi.nlm.nih.gov/pubmed/31221013" + ], "kit": null, "file": "data/addgene_plasmids/130855.addgene-full.gb" }, @@ -115891,7 +146141,10 @@ "plasmid_name": "pDONR223_STC2_p.R5W", "sequence-type": "addgene-full", "addgene_id": "82744", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82744.addgene-full.gb" }, @@ -115900,7 +146153,10 @@ "plasmid_name": "pEF-ENTR C (709-1)", "sequence-type": "depositor-full", "addgene_id": "17429", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17429.depositor-full.gb" }, @@ -115909,7 +146165,10 @@ "plasmid_name": "JDW 836 (pCS2-V5-mScarlet-I-hsKRAS4A-WT)", "sequence-type": "addgene-full", "addgene_id": "156411", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156411.addgene-full.gb" }, @@ -115918,7 +146177,10 @@ "plasmid_name": "p3EHA", "sequence-type": "depositor-full", "addgene_id": "67708", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "file": "data/addgene_plasmids/67708.depositor-full.gb" }, @@ -115927,7 +146189,10 @@ "plasmid_name": "TFORF3263", "sequence-type": "addgene-full", "addgene_id": "144739", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144739.addgene-full.gb" }, @@ -115936,7 +146201,9 @@ "plasmid_name": "pLV-SV40p-gI-BlastR", "sequence-type": "addgene-full", "addgene_id": "207182", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207182.addgene-full.gb" }, @@ -115945,7 +146212,10 @@ "plasmid_name": "pDONR221-ZNF587B", "sequence-type": "depositor-full", "addgene_id": "101621", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101621.depositor-full.gb" }, @@ -115954,7 +146224,6 @@ "plasmid_name": "R777-E027 Hs.CNKSR1", "sequence-type": "depositor-full", "addgene_id": "70311", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -115966,7 +146235,10 @@ "plasmid_name": "pEXP(FLAG/HA-NSP1-K164-H165A)", "sequence-type": "addgene-full", "addgene_id": "188782", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0297262", + "https://www.ncbi.nlm.nih.gov/pubmed/38277395" + ], "kit": null, "file": "data/addgene_plasmids/188782.addgene-full.gb" }, @@ -115975,7 +146247,10 @@ "plasmid_name": "pFRT/FLAG/HA MOV10 K530A", "sequence-type": "depositor-full", "addgene_id": "51716", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.03.017", + "https://www.ncbi.nlm.nih.gov/pubmed/24726324" + ], "kit": null, "file": "data/addgene_plasmids/51716.depositor-full.gb" }, @@ -115984,7 +146259,10 @@ "plasmid_name": "pDONR221 CARD8 FIIND R394E + S297A", "sequence-type": "addgene-full", "addgene_id": "169972", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169972.addgene-full.gb" }, @@ -115993,7 +146271,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-ORF7A", "sequence-type": "addgene-full", "addgene_id": "154421", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154421.addgene-full.gb" }, @@ -116002,7 +146283,10 @@ "plasmid_name": "pDEST-FRT/T0-GFP-PALB2", "sequence-type": "depositor-full", "addgene_id": "71113", - "references": [], + "references": [ + "https://doi.org/10.1038/nature16142", + "https://www.ncbi.nlm.nih.gov/pubmed/26649820" + ], "kit": null, "file": "data/addgene_plasmids/71113.depositor-full.gb" }, @@ -116011,7 +146295,10 @@ "plasmid_name": "pME-mScarlet-STOP", "sequence-type": "addgene-full", "addgene_id": "140876", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/140876.addgene-full.gb" }, @@ -116020,7 +146307,6 @@ "plasmid_name": "pCLX-KRT7-GFP", "sequence-type": "addgene-full", "addgene_id": "114312", - "references": [], "kit": null, "file": "data/addgene_plasmids/114312.addgene-full.gb" }, @@ -116029,7 +146315,10 @@ "plasmid_name": "pDONR223_IDH1_p.P33S", "sequence-type": "addgene-full", "addgene_id": "81676", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -116041,7 +146330,10 @@ "plasmid_name": "5'-3xFLAG Chtop+exon_siResist minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212083", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212083.addgene-full.gb" }, @@ -116050,7 +146342,10 @@ "plasmid_name": "pENTR1A-TAZ S89A", "sequence-type": "addgene-full", "addgene_id": "179911", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jhep.2021.08.021", + "https://www.ncbi.nlm.nih.gov/pubmed/34464659" + ], "kit": null, "file": "data/addgene_plasmids/179911.addgene-full.gb" }, @@ -116059,7 +146354,10 @@ "plasmid_name": "DDX5", "sequence-type": "addgene-full", "addgene_id": "155523", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155523.addgene-full.gb" }, @@ -116068,7 +146366,10 @@ "plasmid_name": "35S-GWY-VP16/pAM", "sequence-type": "addgene-full", "addgene_id": "201232", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16234", + "https://www.ncbi.nlm.nih.gov/pubmed/37323061" + ], "kit": null, "file": "data/addgene_plasmids/201232.addgene-full.gb" }, @@ -116077,7 +146378,10 @@ "plasmid_name": "p3E-EHD1b", "sequence-type": "addgene-full", "addgene_id": "109566", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109566.addgene-full.gb" }, @@ -116086,7 +146390,10 @@ "plasmid_name": "TFORF2966", "sequence-type": "addgene-full", "addgene_id": "144442", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144442.addgene-full.gb" }, @@ -116095,7 +146402,6 @@ "plasmid_name": "pLenti6.3/NS2A", "sequence-type": "addgene-full", "addgene_id": "120836", - "references": [], "kit": null, "file": "data/addgene_plasmids/120836.addgene-full.gb" }, @@ -116104,7 +146410,10 @@ "plasmid_name": "p3E-rab28", "sequence-type": "addgene-full", "addgene_id": "109686", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109686.addgene-full.gb" }, @@ -116113,7 +146422,10 @@ "plasmid_name": "pDONR221_SLC14A1", "sequence-type": "addgene-full", "addgene_id": "131957", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131957.addgene-full.gb" }, @@ -116122,7 +146434,10 @@ "plasmid_name": "pQLinkHD_EBFP2", "sequence-type": "addgene-full", "addgene_id": "118853", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "file": "data/addgene_plasmids/118853.addgene-full.gb" }, @@ -116131,7 +146446,10 @@ "plasmid_name": "TFORF3340", "sequence-type": "addgene-full", "addgene_id": "144816", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144816.addgene-full.gb" }, @@ -116140,7 +146458,6 @@ "plasmid_name": "pSCM167-Venus-VF-hADAM10(aa220-654)", "sequence-type": "addgene-full", "addgene_id": "189560", - "references": [], "kit": null, "file": "data/addgene_plasmids/189560.addgene-full.gb" }, @@ -116149,7 +146466,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter dme-mir-279", "sequence-type": "depositor-full", "addgene_id": "46668", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46668.depositor-full.gb" }, @@ -116158,7 +146478,10 @@ "plasmid_name": "pDONR223_RB1_p.L550I", "sequence-type": "addgene-full", "addgene_id": "81596", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -116170,7 +146493,10 @@ "plasmid_name": "pT2ADW-lox-mCherryNLS-pA-lox-4493NES", "sequence-type": "addgene-full", "addgene_id": "138374", - "references": [], + "references": [ + "https://doi.org/10.1021/acssensors.9b01941", + "https://www.ncbi.nlm.nih.gov/pubmed/32101394" + ], "kit": null, "file": "data/addgene_plasmids/138374.addgene-full.gb" }, @@ -116179,7 +146505,10 @@ "plasmid_name": "pEBTetD-SNAP-Cep290", "sequence-type": "addgene-full", "addgene_id": "136805", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136805.addgene-full.gb" }, @@ -116188,7 +146517,10 @@ "plasmid_name": "pDONR221-TUSC3_STOP", "sequence-type": "depositor-full", "addgene_id": "161470", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161470.depositor-full.gb" }, @@ -116197,7 +146529,10 @@ "plasmid_name": "pCFJ2306 - [1-2] ENTR - Fluor - ceGFP(1 intron, syntrons(3), NLS(2), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159848", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159848.addgene-full.gb" }, @@ -116206,7 +146541,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF9c", "sequence-type": "addgene-full", "addgene_id": "169397", - "references": [], "kit": null, "file": "data/addgene_plasmids/169397.addgene-full.gb" }, @@ -116215,7 +146549,10 @@ "plasmid_name": "pDONR221-SFXN4", "sequence-type": "addgene-full", "addgene_id": "132280", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132280.addgene-full.gb" }, @@ -116224,7 +146561,10 @@ "plasmid_name": "pHAGE-PIK3CA-L456Afs*13", "sequence-type": "addgene-full", "addgene_id": "116508", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116508.addgene-full.gb" }, @@ -116233,7 +146573,10 @@ "plasmid_name": "ZCCHC6", "sequence-type": "addgene-full", "addgene_id": "156140", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156140.addgene-full.gb" }, @@ -116242,7 +146585,9 @@ "plasmid_name": "Shim_ProRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202651", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "file": "data/addgene_plasmids/202651.addgene-full.gb" }, @@ -116251,7 +146596,10 @@ "plasmid_name": "pARS3_MUbCAS9_GW", "sequence-type": "addgene-full", "addgene_id": "128646", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.174870", + "https://www.ncbi.nlm.nih.gov/pubmed/31160418" + ], "kit": null, "file": "data/addgene_plasmids/128646.addgene-full.gb" }, @@ -116260,7 +146608,10 @@ "plasmid_name": "pDONR221_SLC6A3", "sequence-type": "addgene-full", "addgene_id": "132160", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-79218-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33446713" + ], "kit": null, "file": "data/addgene_plasmids/132160.addgene-full.gb" }, @@ -116269,7 +146620,10 @@ "plasmid_name": "10xHis-TEV-ATG5_ATG7_ATG10_ATG12_ATG16L1-TEV-mGFP-StrepII (Human autophagy E3(mGFP)-like enzyme)", "sequence-type": "addgene-full", "addgene_id": "169077", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201912098", + "https://www.ncbi.nlm.nih.gov/pubmed/32437499" + ], "kit": null, "file": "data/addgene_plasmids/169077.addgene-full.gb" }, @@ -116278,7 +146632,10 @@ "plasmid_name": "Flag-HA-STAMBP", "sequence-type": "addgene-full", "addgene_id": "22560", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22560.addgene-full.gb" }, @@ -116287,7 +146644,10 @@ "plasmid_name": "pLenti PGK mKate2-OGT WT (Puro)", "sequence-type": "addgene-full", "addgene_id": "154290", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154290.addgene-full.gb" }, @@ -116296,7 +146656,10 @@ "plasmid_name": "pXL-BacII-CAG-Venus", "sequence-type": "addgene-full", "addgene_id": "170518", - "references": [], + "references": [ + "https://doi.org/10.21769/BioProtoc.4105", + "https://www.ncbi.nlm.nih.gov/pubmed/34458399" + ], "kit": null, "file": "data/addgene_plasmids/170518.addgene-full.gb" }, @@ -116305,7 +146668,10 @@ "plasmid_name": "pENTR D-TOPO-C3_13", "sequence-type": "depositor-full", "addgene_id": "60261", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60261.depositor-full.gb" }, @@ -116314,7 +146680,10 @@ "plasmid_name": "pCW57.1 KBTBD4 R313PRR", "sequence-type": "addgene-full", "addgene_id": "184626", - "references": [], + "references": [ + "https://doi.org/10.1038/s41418-022-00983-4", + "https://www.ncbi.nlm.nih.gov/pubmed/35379950" + ], "kit": null, "file": "data/addgene_plasmids/184626.addgene-full.gb" }, @@ -116323,7 +146692,10 @@ "plasmid_name": "pGL4_NFAT-RE-CMV-BC0537-luc2", "sequence-type": "addgene-full", "addgene_id": "214662", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214662.addgene-full.gb" }, @@ -116332,7 +146704,10 @@ "plasmid_name": "pDONR223_LYN_WT", "sequence-type": "addgene-full", "addgene_id": "82215", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82215.addgene-full.gb" }, @@ -116341,7 +146716,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MARK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170583", - "references": [], "kit": null, "file": "data/addgene_plasmids/170583.addgene-full.gb" }, @@ -116350,7 +146724,10 @@ "plasmid_name": "pHAGE-RHOA-Y42C", "sequence-type": "addgene-full", "addgene_id": "116673", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116673.addgene-full.gb" }, @@ -116359,7 +146736,10 @@ "plasmid_name": "pDONR223-MAPK6", "sequence-type": "addgene-full", "addgene_id": "23836", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -116371,7 +146751,10 @@ "plasmid_name": "pHAGE-PIK3R1-G644S", "sequence-type": "addgene-full", "addgene_id": "116593", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116593.addgene-full.gb" }, @@ -116380,7 +146763,10 @@ "plasmid_name": "pDONR223-PBK", "sequence-type": "addgene-full", "addgene_id": "23782", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -116392,7 +146778,10 @@ "plasmid_name": "pDONR223_CDK4_p.A23S", "sequence-type": "addgene-full", "addgene_id": "81327", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -116404,7 +146793,6 @@ "plasmid_name": "IDG_KCNH8_OE_1", "sequence-type": "addgene-full", "addgene_id": "161702", - "references": [], "kit": null, "file": "data/addgene_plasmids/161702.addgene-full.gb" }, @@ -116413,7 +146801,10 @@ "plasmid_name": "pGL198", "sequence-type": "addgene-full", "addgene_id": "180472", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13754", + "https://www.ncbi.nlm.nih.gov/pubmed/34837319" + ], "kit": null, "file": "data/addgene_plasmids/180472.addgene-full.gb" }, @@ -116422,7 +146813,10 @@ "plasmid_name": "pHAGE-DDR1__PAK1", "sequence-type": "addgene-full", "addgene_id": "116813", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116813.addgene-full.gb" }, @@ -116431,7 +146825,10 @@ "plasmid_name": "pCPP5618", "sequence-type": "addgene-full", "addgene_id": "128709", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128709.addgene-full.gb" }, @@ -116440,7 +146837,10 @@ "plasmid_name": "pENTR-L1-SYN-R5", "sequence-type": "depositor-full", "addgene_id": "32582", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32582.depositor-full.gb" }, @@ -116449,7 +146849,9 @@ "plasmid_name": "pENTR CMVie-Lifeact-EGFP L1-R5", "sequence-type": "addgene-full", "addgene_id": "84391", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30061623" + ], "kit": null, "file": "data/addgene_plasmids/84391.addgene-full.gb" }, @@ -116458,7 +146860,10 @@ "plasmid_name": "pAG415GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14242", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -116470,7 +146875,6 @@ "plasmid_name": "pgLAP5", "sequence-type": "depositor-full", "addgene_id": "19706", - "references": [], "kit": null, "file": "data/addgene_plasmids/19706.depositor-full.gb" }, @@ -116479,7 +146883,10 @@ "plasmid_name": "R989-X05-636: His6-MBP-tev-G-Hs.KRAS4b(1-188)", "sequence-type": "addgene-full", "addgene_id": "159553", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159553.addgene-full.gb" }, @@ -116488,7 +146895,6 @@ "plasmid_name": "pDEST26-hTLR3-Nluc", "sequence-type": "addgene-full", "addgene_id": "197638", - "references": [], "kit": null, "file": "data/addgene_plasmids/197638.addgene-full.gb" }, @@ -116497,7 +146903,10 @@ "plasmid_name": "pDONR221 Ub-NLRP1 S1213 P1214R", "sequence-type": "addgene-full", "addgene_id": "166830", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166830.addgene-full.gb" }, @@ -116506,7 +146915,10 @@ "plasmid_name": "pDEST-CMV mCherry-GFP-LC3B G120A", "sequence-type": "addgene-full", "addgene_id": "123235", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123235.addgene-full.gb" }, @@ -116515,7 +146927,10 @@ "plasmid_name": "pCAG/ATP11C-c-HA", "sequence-type": "addgene-full", "addgene_id": "209222", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.258523", + "https://www.ncbi.nlm.nih.gov/pubmed/34528675" + ], "kit": null, "file": "data/addgene_plasmids/209222.addgene-full.gb" }, @@ -116524,7 +146939,10 @@ "plasmid_name": "pLenti CMV TRE3G Puro FLAG-DD-ER-mCherry-TRF1-FokI D450A", "sequence-type": "addgene-full", "addgene_id": "207953", - "references": [], + "references": [ + "https://doi.org/10.1038/nature20099", + "https://www.ncbi.nlm.nih.gov/pubmed/27760120" + ], "kit": null, "file": "data/addgene_plasmids/207953.addgene-full.gb" }, @@ -116533,7 +146951,6 @@ "plasmid_name": "p663-UBC-MTS-miniTurbo-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214456", - "references": [], "kit": null, "file": "data/addgene_plasmids/214456.addgene-full.gb" }, @@ -116542,7 +146959,10 @@ "plasmid_name": "pDONR223_RHOA_p.G62E", "sequence-type": "addgene-full", "addgene_id": "81268", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -116554,7 +146974,10 @@ "plasmid_name": "pRU319", "sequence-type": "addgene-full", "addgene_id": "167686", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167686.addgene-full.gb" }, @@ -116563,7 +146986,10 @@ "plasmid_name": "pLG169", "sequence-type": "addgene-full", "addgene_id": "124367", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-019-0412-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31792444" + ], "kit": null, "file": "data/addgene_plasmids/124367.addgene-full.gb" }, @@ -116572,7 +146998,9 @@ "plasmid_name": "HuEV-A", "sequence-type": "depositor-full", "addgene_id": "68342", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27528826" + ], "kit": null, "file": "data/addgene_plasmids/68342.depositor-full.gb" }, @@ -116581,7 +147009,10 @@ "plasmid_name": "pMartini Gate B R1-R2", "sequence-type": "depositor-full", "addgene_id": "36433", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "file": "data/addgene_plasmids/36433.depositor-full.gb" }, @@ -116590,7 +147021,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir50-3", "sequence-type": "depositor-full", "addgene_id": "46712", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46712.depositor-full.gb" }, @@ -116599,7 +147033,10 @@ "plasmid_name": "pcdna3 flag - ULK1 wt", "sequence-type": "addgene-full", "addgene_id": "27636", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1196371", + "https://www.ncbi.nlm.nih.gov/pubmed/21205641" + ], "kit": null, "file": "data/addgene_plasmids/27636.addgene-full.gb" }, @@ -116608,7 +147045,10 @@ "plasmid_name": "pDONR221-SLC25A33_STOP", "sequence-type": "depositor-full", "addgene_id": "161159", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161159.depositor-full.gb" }, @@ -116617,7 +147057,10 @@ "plasmid_name": "pREP", "sequence-type": "depositor-full", "addgene_id": "51491", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51491.depositor-full.gb" }, @@ -116626,7 +147069,10 @@ "plasmid_name": "pEZYmyc-His", "sequence-type": "addgene-full", "addgene_id": "18701", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18701.addgene-full.gb" }, @@ -116635,7 +147081,6 @@ "plasmid_name": "pLEX307-DPP4-puro", "sequence-type": "addgene-full", "addgene_id": "158451", - "references": [], "kit": null, "file": "data/addgene_plasmids/158451.addgene-full.gb" }, @@ -116644,7 +147089,10 @@ "plasmid_name": "pDONR223_TP53_p.C275S", "sequence-type": "addgene-full", "addgene_id": "81381", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -116656,7 +147104,10 @@ "plasmid_name": "pHAGE-PIK3CA-R38C", "sequence-type": "addgene-full", "addgene_id": "116535", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116535.addgene-full.gb" }, @@ -116665,7 +147116,10 @@ "plasmid_name": "pDEST-DHFR F[1,2]-N (TRP1)", "sequence-type": "addgene-full", "addgene_id": "177797", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac045", + "https://www.ncbi.nlm.nih.gov/pubmed/35137167" + ], "kit": null, "file": "data/addgene_plasmids/177797.addgene-full.gb" }, @@ -116674,7 +147128,10 @@ "plasmid_name": "pDONR223-LCK", "sequence-type": "addgene-full", "addgene_id": "23890", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -116686,7 +147143,10 @@ "plasmid_name": "pEAHISSIRV418/gp25", "sequence-type": "addgene-full", "addgene_id": "97052", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97052.addgene-full.gb" }, @@ -116695,7 +147155,10 @@ "plasmid_name": "pLenti GW-mCit-PA", "sequence-type": "addgene-full", "addgene_id": "113457", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113457.addgene-full.gb" }, @@ -116704,7 +147167,9 @@ "plasmid_name": "p49202-DEST", "sequence-type": "addgene-full", "addgene_id": "90100", - "references": [], + "references": [ + "https://doi.org/10.7287/peerj.preprints.2907v1" + ], "kit": null, "file": "data/addgene_plasmids/90100.addgene-full.gb" }, @@ -116713,7 +147178,10 @@ "plasmid_name": "pDONR201-Eps8L2_529-715", "sequence-type": "addgene-full", "addgene_id": "196533", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196533.addgene-full.gb" }, @@ -116722,7 +147190,10 @@ "plasmid_name": "pDONR223_PRKCZ_WT", "sequence-type": "addgene-full", "addgene_id": "82228", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82228.addgene-full.gb" }, @@ -116731,7 +147202,10 @@ "plasmid_name": "pCMU-TLEr", "sequence-type": "depositor-full", "addgene_id": "61187", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61187.depositor-full.gb" }, @@ -116740,7 +147214,10 @@ "plasmid_name": "pDONR221-ANKH_STOP", "sequence-type": "addgene-full", "addgene_id": "161444", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161444.addgene-full.gb" }, @@ -116749,7 +147226,10 @@ "plasmid_name": "C413-E22: attB4-polyhedrinp>-attB1r", "sequence-type": "addgene-full", "addgene_id": "162922", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -116761,7 +147241,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (AA 1-500)", "sequence-type": "addgene-full", "addgene_id": "119312", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119312.addgene-full.gb" }, @@ -116770,7 +147253,10 @@ "plasmid_name": "pDL6", "sequence-type": "addgene-full", "addgene_id": "175888", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175888.addgene-full.gb" }, @@ -116779,7 +147265,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS4B", "sequence-type": "addgene-full", "addgene_id": "145357", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145357.addgene-full.gb" }, @@ -116788,7 +147277,10 @@ "plasmid_name": "pKH116_keima-YIPF3", "sequence-type": "addgene-full", "addgene_id": "214970", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-023-06657-6", + "https://www.ncbi.nlm.nih.gov/pubmed/37757899" + ], "kit": null, "file": "data/addgene_plasmids/214970.addgene-full.gb" }, @@ -116797,7 +147289,10 @@ "plasmid_name": "pPB-cT3G-cERP2-JUNB", "sequence-type": "addgene-full", "addgene_id": "192907", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192907.addgene-full.gb" }, @@ -116806,7 +147301,10 @@ "plasmid_name": "AAEL008287 DH44 R", "sequence-type": "addgene-full", "addgene_id": "115407", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115407.addgene-full.gb" }, @@ -116815,7 +147313,10 @@ "plasmid_name": "pTO_CHMP4B_LAP", "sequence-type": "addgene-full", "addgene_id": "101850", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3559", + "https://www.ncbi.nlm.nih.gov/pubmed/28604678" + ], "kit": null, "file": "data/addgene_plasmids/101850.addgene-full.gb" }, @@ -116824,7 +147325,9 @@ "plasmid_name": "pMpGWB118", "sequence-type": "depositor-full", "addgene_id": "68572", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68572.depositor-full.gb" }, @@ -116833,7 +147336,10 @@ "plasmid_name": "pUBQ10-SNAP-GW", "sequence-type": "addgene-full", "addgene_id": "209350", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209350.addgene-full.gb" }, @@ -116842,7 +147348,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-ZNF746-C571A", "sequence-type": "addgene-full", "addgene_id": "207821", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207821.addgene-full.gb" }, @@ -116851,7 +147360,10 @@ "plasmid_name": "Active Wnt3-V5", "sequence-type": "depositor-full", "addgene_id": "43811", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43811.depositor-full.gb" }, @@ -116860,7 +147372,10 @@ "plasmid_name": "pDONR221_SLC44A3", "sequence-type": "addgene-full", "addgene_id": "132226", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132226.addgene-full.gb" }, @@ -116869,7 +147384,10 @@ "plasmid_name": "p5E-gfap", "sequence-type": "addgene-full", "addgene_id": "75024", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -116881,7 +147399,10 @@ "plasmid_name": "pTORKm43GWY", "sequence-type": "addgene-full", "addgene_id": "112901", - "references": [], + "references": [ + "https://doi.org/10.1128/mBio.01516-19", + "https://www.ncbi.nlm.nih.gov/pubmed/31575765" + ], "kit": null, "file": "data/addgene_plasmids/112901.addgene-full.gb" }, @@ -116890,7 +147411,6 @@ "plasmid_name": "pDONR221-K40R-short-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "195401", - "references": [], "kit": null, "file": "data/addgene_plasmids/195401.addgene-full.gb" }, @@ -116899,7 +147419,10 @@ "plasmid_name": "pDONR223_PKIA_WT", "sequence-type": "addgene-full", "addgene_id": "82153", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82153.addgene-full.gb" }, @@ -116908,7 +147431,10 @@ "plasmid_name": "pDONR221_SLC22A25", "sequence-type": "addgene-full", "addgene_id": "132012", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132012.addgene-full.gb" }, @@ -116917,7 +147443,10 @@ "plasmid_name": "pCPP6533", "sequence-type": "addgene-full", "addgene_id": "128734", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.04.037", + "https://www.ncbi.nlm.nih.gov/pubmed/29742421" + ], "kit": null, "file": "data/addgene_plasmids/128734.addgene-full.gb" }, @@ -116926,7 +147455,6 @@ "plasmid_name": "R777-E131 Hs.MET", "sequence-type": "depositor-full", "addgene_id": "70415", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -116938,7 +147466,10 @@ "plasmid_name": "pMuLE ENTR CMV eGFP L1-R5", "sequence-type": "depositor-full", "addgene_id": "62142", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62142.depositor-full.gb" }, @@ -116947,7 +147478,10 @@ "plasmid_name": "pYPQ265K", "sequence-type": "addgene-full", "addgene_id": "173997", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "file": "data/addgene_plasmids/173997.addgene-full.gb" }, @@ -116956,7 +147490,10 @@ "plasmid_name": "pCK036 desmaMCS:minCerulean,cryaa:Venus", "sequence-type": "addgene-full", "addgene_id": "195981", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195981.addgene-full.gb" }, @@ -116965,7 +147502,10 @@ "plasmid_name": "PB-CT3G-CERP2-MG-IRES2-mNeonGreen", "sequence-type": "addgene-full", "addgene_id": "175508", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175508.addgene-full.gb" }, @@ -116974,7 +147514,10 @@ "plasmid_name": "pDONR223_NOTCH1_ICN", "sequence-type": "addgene-full", "addgene_id": "82087", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -116986,7 +147529,10 @@ "plasmid_name": "pGAPDH::H2B-mScarlet", "sequence-type": "addgene-full", "addgene_id": "186764", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2022.100298", + "https://www.ncbi.nlm.nih.gov/pubmed/36313809" + ], "kit": null, "file": "data/addgene_plasmids/186764.addgene-full.gb" }, @@ -116995,7 +147541,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF8", "sequence-type": "addgene-full", "addgene_id": "141278", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141278.addgene-full.gb" }, @@ -117004,7 +147553,6 @@ "plasmid_name": "Hs.KRAS4a Q61R", "sequence-type": "depositor-full", "addgene_id": "83172", - "references": [], "kit": null, "file": "data/addgene_plasmids/83172.depositor-full.gb" }, @@ -117013,7 +147561,10 @@ "plasmid_name": "pDONR223 LC3C no-stop", "sequence-type": "addgene-full", "addgene_id": "123208", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123208.addgene-full.gb" }, @@ -117022,7 +147573,10 @@ "plasmid_name": "pDONR223-JAK3", "sequence-type": "addgene-full", "addgene_id": "23944", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -117034,7 +147588,6 @@ "plasmid_name": "IDG_FAM26D_OE_1", "sequence-type": "addgene-full", "addgene_id": "161670", - "references": [], "kit": null, "file": "data/addgene_plasmids/161670.addgene-full.gb" }, @@ -117043,7 +147596,10 @@ "plasmid_name": "pLenti-CMV-NFE2L2-Puro", "sequence-type": "addgene-full", "addgene_id": "181919", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2118646119", + "https://www.ncbi.nlm.nih.gov/pubmed/35271393" + ], "kit": null, "file": "data/addgene_plasmids/181919.addgene-full.gb" }, @@ -117052,7 +147608,10 @@ "plasmid_name": "pBullet-cyt-c", "sequence-type": "depositor-full", "addgene_id": "53066", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12577", + "https://www.ncbi.nlm.nih.gov/pubmed/24905498" + ], "kit": null, "file": "data/addgene_plasmids/53066.depositor-full.gb" }, @@ -117061,7 +147620,10 @@ "plasmid_name": "pcDNA5-FRT/TO-3*Flag-APEX2 C-term EWSR1", "sequence-type": "addgene-full", "addgene_id": "187586", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.12.010", + "https://www.ncbi.nlm.nih.gov/pubmed/35182477" + ], "kit": null, "file": "data/addgene_plasmids/187586.addgene-full.gb" }, @@ -117070,7 +147632,10 @@ "plasmid_name": "pYPQ265", "sequence-type": "addgene-full", "addgene_id": "164712", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164712.addgene-full.gb" }, @@ -117079,7 +147644,10 @@ "plasmid_name": "pCM5.48", "sequence-type": "depositor-full", "addgene_id": "19385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19385.depositor-full.gb" }, @@ -117088,7 +147656,10 @@ "plasmid_name": "pHAGE-TGFBR2-R190H", "sequence-type": "addgene-full", "addgene_id": "116701", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116701.addgene-full.gb" }, @@ -117097,7 +147668,10 @@ "plasmid_name": "pDONR221_SLC30A4", "sequence-type": "addgene-full", "addgene_id": "132089", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132089.addgene-full.gb" }, @@ -117106,7 +147680,10 @@ "plasmid_name": "pMXs-ms-L-Myc-L351P", "sequence-type": "depositor-full", "addgene_id": "50777", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "file": "data/addgene_plasmids/50777.depositor-full.gb" }, @@ -117115,7 +147692,10 @@ "plasmid_name": "pFUSE-DEST_R1R4", "sequence-type": "addgene-full", "addgene_id": "97186", - "references": [], + "references": [ + "https://doi.org/10.1158/0008-5472.CAN-16-2745", + "https://www.ncbi.nlm.nih.gov/pubmed/28512244" + ], "kit": null, "file": "data/addgene_plasmids/97186.addgene-full.gb" }, @@ -117124,7 +147704,10 @@ "plasmid_name": "pJH54_pE12_hyCal7", "sequence-type": "addgene-full", "addgene_id": "160409", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160409.addgene-full.gb" }, @@ -117133,7 +147716,6 @@ "plasmid_name": "Ad-mMKP3 S159A S197A-Flag", "sequence-type": "addgene-full", "addgene_id": "131579", - "references": [], "kit": null, "file": "data/addgene_plasmids/131579.addgene-full.gb" }, @@ -117142,7 +147724,10 @@ "plasmid_name": "pcDNA3.2/v5-DEST hGlut1", "sequence-type": "addgene-full", "addgene_id": "18085", - "references": [], + "references": [ + "https://doi.org/10.1096/fj.09-146472", + "https://www.ncbi.nlm.nih.gov/pubmed/20354141" + ], "kit": null, "file": "data/addgene_plasmids/18085.addgene-full.gb" }, @@ -117151,7 +147736,10 @@ "plasmid_name": "pWalium Htt19Q-mCherry", "sequence-type": "addgene-full", "addgene_id": "201248", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddx260", + "https://www.ncbi.nlm.nih.gov/pubmed/28934390" + ], "kit": null, "file": "data/addgene_plasmids/201248.addgene-full.gb" }, @@ -117160,7 +147748,10 @@ "plasmid_name": "pGL3-MTS-G3635A-L17-Q2L7-T2176C-UGI-Puro", "sequence-type": "addgene-full", "addgene_id": "209646", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-42359-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37857619" + ], "kit": null, "file": "data/addgene_plasmids/209646.addgene-full.gb" }, @@ -117169,7 +147760,10 @@ "plasmid_name": "TFORF2962", "sequence-type": "addgene-full", "addgene_id": "144438", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144438.addgene-full.gb" }, @@ -117178,7 +147772,10 @@ "plasmid_name": "MYC_pLX307", "sequence-type": "addgene-full", "addgene_id": "98363", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98363.addgene-full.gb" }, @@ -117187,7 +147784,10 @@ "plasmid_name": "pDONR221-SLC35C1_STOP", "sequence-type": "addgene-full", "addgene_id": "161229", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161229.addgene-full.gb" }, @@ -117196,7 +147796,10 @@ "plasmid_name": "pDONR223_ARAF_p.V145L", "sequence-type": "addgene-full", "addgene_id": "82811", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82811.addgene-full.gb" }, @@ -117205,7 +147808,6 @@ "plasmid_name": "R777-E166 Hs.PIK3CB-nostop", "sequence-type": "addgene-full", "addgene_id": "70450", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -117217,7 +147819,10 @@ "plasmid_name": "pDEST-ERBB3-v2", "sequence-type": "addgene-full", "addgene_id": "154894", - "references": [], + "references": [ + "https://doi.org/10.1038/s41388-020-01604-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33420373" + ], "kit": null, "file": "data/addgene_plasmids/154894.addgene-full.gb" }, @@ -117226,7 +147831,10 @@ "plasmid_name": "pHAGE-ERBB2-V842E", "sequence-type": "addgene-full", "addgene_id": "116358", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116358.addgene-full.gb" }, @@ -117235,7 +147843,10 @@ "plasmid_name": "GAPDH", "sequence-type": "addgene-full", "addgene_id": "155622", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155622.addgene-full.gb" }, @@ -117244,7 +147855,10 @@ "plasmid_name": "p3E-rab13", "sequence-type": "addgene-full", "addgene_id": "109667", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109667.addgene-full.gb" }, @@ -117253,7 +147867,10 @@ "plasmid_name": "TFORF3267", "sequence-type": "addgene-full", "addgene_id": "144743", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144743.addgene-full.gb" }, @@ -117262,7 +147879,6 @@ "plasmid_name": "pHAGE mCherry-Rab11A S25N", "sequence-type": "addgene-full", "addgene_id": "228037", - "references": [], "kit": null, "file": "data/addgene_plasmids/228037.addgene-full.gb" }, @@ -117271,7 +147887,10 @@ "plasmid_name": "pDONR221-SLC1A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161152", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161152.addgene-full.gb" }, @@ -117280,7 +147899,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_BH3-4E", "sequence-type": "addgene-full", "addgene_id": "187144", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187144.addgene-full.gb" }, @@ -117289,7 +147911,10 @@ "plasmid_name": "pDONR223_GALNT14_p.R336Q", "sequence-type": "addgene-full", "addgene_id": "81577", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -117301,7 +147926,10 @@ "plasmid_name": "pDONR223_CTNNB1_p.G34R", "sequence-type": "addgene-full", "addgene_id": "81697", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -117313,7 +147941,10 @@ "plasmid_name": "5'-3xFLAG Mef2a-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212062", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212062.addgene-full.gb" }, @@ -117322,7 +147953,10 @@ "plasmid_name": "pDONR223_KRAS_WT", "sequence-type": "addgene-full", "addgene_id": "81923", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/81923.addgene-full.gb" }, @@ -117331,7 +147965,10 @@ "plasmid_name": "pAdCMV/V5-DEST-Y705F-STAT3-3xFlag", "sequence-type": "addgene-full", "addgene_id": "99261", - "references": [], + "references": [ + "https://doi.org/10.1152/ajpcell.00235.2017", + "https://www.ncbi.nlm.nih.gov/pubmed/29351406" + ], "kit": null, "file": "data/addgene_plasmids/99261.addgene-full.gb" }, @@ -117340,7 +147977,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-Spike", "sequence-type": "addgene-full", "addgene_id": "168891", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168891.addgene-full.gb" }, @@ -117349,7 +147989,10 @@ "plasmid_name": "p3E-Pacsin2", "sequence-type": "addgene-full", "addgene_id": "109587", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109587.addgene-full.gb" }, @@ -117358,7 +148001,10 @@ "plasmid_name": "pDONR221-SLC12A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161086", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161086.addgene-full.gb" }, @@ -117367,7 +148013,10 @@ "plasmid_name": "pDONR223_NKX2-1_W208L", "sequence-type": "addgene-full", "addgene_id": "221474", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221474.addgene-full.gb" }, @@ -117376,7 +148025,10 @@ "plasmid_name": "TFORF3221", "sequence-type": "addgene-full", "addgene_id": "144697", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144697.addgene-full.gb" }, @@ -117385,7 +148037,10 @@ "plasmid_name": "TFORF3447", "sequence-type": "addgene-full", "addgene_id": "144923", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144923.addgene-full.gb" }, @@ -117394,7 +148049,10 @@ "plasmid_name": "pDONR223-ZNF747", "sequence-type": "addgene-full", "addgene_id": "88134", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88134.addgene-full.gb" }, @@ -117403,7 +148061,10 @@ "plasmid_name": "plenti-UbcP-Myc-CRBN-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107376", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107376.addgene-full.gb" }, @@ -117412,7 +148073,10 @@ "plasmid_name": "pHAGE-CDK4-R24L", "sequence-type": "addgene-full", "addgene_id": "116217", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116217.addgene-full.gb" }, @@ -117421,7 +148085,10 @@ "plasmid_name": "SHP2(T253M/Q257L)@pLKO-Trex-SBP", "sequence-type": "addgene-full", "addgene_id": "85458", - "references": [], + "references": [ + "https://doi.org/10.1038/nature18621", + "https://www.ncbi.nlm.nih.gov/pubmed/27362227" + ], "kit": null, "file": "data/addgene_plasmids/85458.addgene-full.gb" }, @@ -117430,7 +148097,10 @@ "plasmid_name": "TFORF3101", "sequence-type": "addgene-full", "addgene_id": "144577", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144577.addgene-full.gb" }, @@ -117439,7 +148109,10 @@ "plasmid_name": "TFORF3517", "sequence-type": "depositor-full", "addgene_id": "144993", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144993.depositor-full.gb" }, @@ -117460,7 +148133,10 @@ "plasmid_name": "pDONR223_SMARCB1_WT", "sequence-type": "addgene-full", "addgene_id": "81743", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -117472,7 +148148,10 @@ "plasmid_name": "pMMK ENTR 2 CMV mTFP1 Actin", "sequence-type": "addgene-full", "addgene_id": "206255", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206255.addgene-full.gb" }, @@ -117481,7 +148160,10 @@ "plasmid_name": "slc1a3b:mCD8mCherry", "sequence-type": "addgene-full", "addgene_id": "170207", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-020-0703-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32895565" + ], "kit": null, "file": "data/addgene_plasmids/170207.addgene-full.gb" }, @@ -117490,7 +148172,9 @@ "plasmid_name": "pME-mScarlet-I-P2A-iCre (JDW 917)", "sequence-type": "addgene-full", "addgene_id": "224516", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224516.addgene-full.gb" }, @@ -117499,7 +148183,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_KDR_E97A_K100A", "sequence-type": "depositor-full", "addgene_id": "65660", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65660.depositor-full.gb" }, @@ -117508,7 +148195,9 @@ "plasmid_name": "pME-mKate2 no stop", "sequence-type": "depositor-full", "addgene_id": "80806", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/80806.depositor-full.gb" }, @@ -117517,7 +148206,10 @@ "plasmid_name": "pDONR221-SLCO1B3_STOP", "sequence-type": "addgene-full", "addgene_id": "161366", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161366.addgene-full.gb" }, @@ -117526,7 +148218,10 @@ "plasmid_name": "pGMEH-10M1-clpX-K127R", "sequence-type": "depositor-full", "addgene_id": "27374", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkp015", + "https://www.ncbi.nlm.nih.gov/pubmed/19174563" + ], "kit": null, "file": "data/addgene_plasmids/27374.depositor-full.gb" }, @@ -117535,7 +148230,9 @@ "plasmid_name": "pPB-cT3G-cERP2-CTCFL", "sequence-type": "addgene-full", "addgene_id": "222546", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222546.addgene-full.gb" }, @@ -117544,7 +148241,6 @@ "plasmid_name": "R777-E313 Hs.SHC4", "sequence-type": "depositor-full", "addgene_id": "70597", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -117556,7 +148252,10 @@ "plasmid_name": "pAG424GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14224", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -117568,7 +148267,10 @@ "plasmid_name": "p{3P3-mTurquoise::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182169", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182169.addgene-full.gb" }, @@ -117577,7 +148279,10 @@ "plasmid_name": "A1-LCD-14N+14Q", "sequence-type": "addgene-full", "addgene_id": "178692", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178692.addgene-full.gb" }, @@ -117586,7 +148291,6 @@ "plasmid_name": "pVP16-tev-PRT1-C195A", "sequence-type": "addgene-full", "addgene_id": "83408", - "references": [], "kit": null, "file": "data/addgene_plasmids/83408.addgene-full.gb" }, @@ -117595,7 +148299,10 @@ "plasmid_name": "pME-TagRFPt-NS", "sequence-type": "depositor-full", "addgene_id": "75343", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": null, "file": "data/addgene_plasmids/75343.depositor-full.gb" }, @@ -117604,7 +148311,10 @@ "plasmid_name": "pGCS-N6(eGFP)", "sequence-type": "addgene-full", "addgene_id": "85723", - "references": [], + "references": [ + "https://doi.org/10.1093/abbs/gmw107", + "https://www.ncbi.nlm.nih.gov/pubmed/27797719" + ], "kit": { "name": "pGCS Vector Kit", "url": "https://www.addgene.org/1000000107/" @@ -117616,7 +148326,10 @@ "plasmid_name": "p3E-rab9b", "sequence-type": "addgene-full", "addgene_id": "109728", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109728.addgene-full.gb" }, @@ -117625,7 +148338,10 @@ "plasmid_name": "pAC1816_pCR8-gSMN2-DN4", "sequence-type": "addgene-full", "addgene_id": "118649", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118649.addgene-full.gb" }, @@ -117634,7 +148350,10 @@ "plasmid_name": "pENTR D-TOPO-C2_8", "sequence-type": "depositor-full", "addgene_id": "60249", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60249.depositor-full.gb" }, @@ -117643,7 +148362,10 @@ "plasmid_name": "pFRT/FLAG/HA-DEST EIF2C1", "sequence-type": "depositor-full", "addgene_id": "19887", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19887.depositor-full.gb" }, @@ -117652,7 +148374,10 @@ "plasmid_name": "pAG425 GAL Pong TPase L418A, L420A", "sequence-type": "addgene-full", "addgene_id": "145795", - "references": [], + "references": [ + "https://doi.org/10.1186/1759-8753-1-5", + "https://www.ncbi.nlm.nih.gov/pubmed/20226077" + ], "kit": null, "file": "data/addgene_plasmids/145795.addgene-full.gb" }, @@ -117661,7 +148386,10 @@ "plasmid_name": "KA501: pMVP (L3-L2) pA; CMV::TETa-pA", "sequence-type": "addgene-full", "addgene_id": "121801", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121801.addgene-full.gb" }, @@ -117670,7 +148398,10 @@ "plasmid_name": "pDONR223_ACVR1B_p.D335N", "sequence-type": "addgene-full", "addgene_id": "81438", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -117682,7 +148413,10 @@ "plasmid_name": "pRARE-MBP-DEST", "sequence-type": "depositor-full", "addgene_id": "84650", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.111.093518", + "https://www.ncbi.nlm.nih.gov/pubmed/22267487" + ], "kit": null, "file": "data/addgene_plasmids/84650.depositor-full.gb" }, @@ -117691,7 +148425,10 @@ "plasmid_name": "pCFJ104 - Pmyo-3::mCherry::unc-54", "sequence-type": "addgene-full", "addgene_id": "19328", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.248", + "https://www.ncbi.nlm.nih.gov/pubmed/18953339" + ], "kit": null, "file": "data/addgene_plasmids/19328.addgene-full.gb" }, @@ -117700,7 +148437,6 @@ "plasmid_name": "pLenti-PGK-NXPH4 (neo)", "sequence-type": "addgene-full", "addgene_id": "192078", - "references": [], "kit": null, "file": "data/addgene_plasmids/192078.addgene-full.gb" }, @@ -117709,7 +148445,10 @@ "plasmid_name": "actc1b-mKate2-Dnm2b", "sequence-type": "addgene-full", "addgene_id": "109521", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109521.addgene-full.gb" }, @@ -117718,7 +148457,10 @@ "plasmid_name": "pLEELA", "sequence-type": "depositor-full", "addgene_id": "79752", - "references": [], + "references": [ + "https://doi.org/10.1016/j.febslet.2004.10.062", + "https://www.ncbi.nlm.nih.gov/pubmed/15556641" + ], "kit": null, "file": "data/addgene_plasmids/79752.depositor-full.gb" }, @@ -117727,7 +148469,10 @@ "plasmid_name": "pDONR221-SLC22A5_STOP", "sequence-type": "addgene-full", "addgene_id": "161214", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161214.addgene-full.gb" }, @@ -117736,7 +148481,6 @@ "plasmid_name": "pKLV-gRNA-BTRC-MGMT_2", "sequence-type": "addgene-full", "addgene_id": "136416", - "references": [], "kit": null, "file": "data/addgene_plasmids/136416.addgene-full.gb" }, @@ -117745,7 +148489,10 @@ "plasmid_name": "pAG423GAL-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14173", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -117757,7 +148504,10 @@ "plasmid_name": "pDONR223_SPOP_p.E50K", "sequence-type": "addgene-full", "addgene_id": "81631", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -117769,7 +148519,10 @@ "plasmid_name": "pDONR223_TPK1_p.K111M", "sequence-type": "addgene-full", "addgene_id": "82798", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82798.addgene-full.gb" }, @@ -117778,7 +148531,10 @@ "plasmid_name": "pEBTetBl-CLIP-Sfi1", "sequence-type": "addgene-full", "addgene_id": "136842", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136842.addgene-full.gb" }, @@ -117787,7 +148543,10 @@ "plasmid_name": "pCBDU-JW", "sequence-type": "addgene-full", "addgene_id": "111237", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.4464", + "https://www.ncbi.nlm.nih.gov/pubmed/29039417" + ], "kit": null, "file": "data/addgene_plasmids/111237.addgene-full.gb" }, @@ -117796,7 +148555,10 @@ "plasmid_name": "LIIIbeta F A-B", "sequence-type": "depositor-full", "addgene_id": "54389", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54389.depositor-full.gb" }, @@ -117805,7 +148567,10 @@ "plasmid_name": "pHAGE-ERBB4-S774G", "sequence-type": "addgene-full", "addgene_id": "116365", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116365.addgene-full.gb" }, @@ -117814,7 +148579,10 @@ "plasmid_name": "TFORF3375", "sequence-type": "addgene-full", "addgene_id": "144851", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144851.addgene-full.gb" }, @@ -117823,7 +148591,10 @@ "plasmid_name": "pDEST-N2H-N1", "sequence-type": "addgene-full", "addgene_id": "125547", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11809-2", + "https://www.ncbi.nlm.nih.gov/pubmed/31467278" + ], "kit": null, "file": "data/addgene_plasmids/125547.addgene-full.gb" }, @@ -117832,7 +148603,10 @@ "plasmid_name": "pDONR221_SLC15A4", "sequence-type": "addgene-full", "addgene_id": "131910", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131910.addgene-full.gb" }, @@ -117841,7 +148615,10 @@ "plasmid_name": "pEN_TT 3xFLAG-TTI1", "sequence-type": "addgene-full", "addgene_id": "192303", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192303.addgene-full.gb" }, @@ -117850,7 +148627,10 @@ "plasmid_name": "pGP8GF-ZmAFB2/3 b2", "sequence-type": "addgene-full", "addgene_id": "188425", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188425.addgene-full.gb" }, @@ -117859,7 +148639,10 @@ "plasmid_name": "pSECB sgMTHFD2L_1", "sequence-type": "addgene-full", "addgene_id": "106306", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106306.addgene-full.gb" }, @@ -117868,7 +148651,10 @@ "plasmid_name": "pDRAV-1", "sequence-type": "depositor-full", "addgene_id": "26746", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1521", + "https://www.ncbi.nlm.nih.gov/pubmed/20953177" + ], "kit": null, "file": "data/addgene_plasmids/26746.depositor-full.gb" }, @@ -117877,7 +148663,9 @@ "plasmid_name": "pLentiN MmuPV1 E6", "sequence-type": "addgene-full", "addgene_id": "87661", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28107544" + ], "kit": null, "file": "data/addgene_plasmids/87661.addgene-full.gb" }, @@ -117886,7 +148674,10 @@ "plasmid_name": "pBSDONR P4r-P2", "sequence-type": "addgene-full", "addgene_id": "121527", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.110.171785", + "https://www.ncbi.nlm.nih.gov/pubmed/21343429" + ], "kit": null, "file": "data/addgene_plasmids/121527.addgene-full.gb" }, @@ -117895,7 +148686,10 @@ "plasmid_name": "BCL6-GFP G55A in Artichoke", "sequence-type": "addgene-full", "addgene_id": "169935", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-020-2925-1", + "https://www.ncbi.nlm.nih.gov/pubmed/33208943" + ], "kit": null, "file": "data/addgene_plasmids/169935.addgene-full.gb" }, @@ -117904,7 +148698,10 @@ "plasmid_name": "MAC-SARS-CoV-2 Orf3b", "sequence-type": "addgene-full", "addgene_id": "158373", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158373.addgene-full.gb" }, @@ -117913,7 +148710,6 @@ "plasmid_name": "N-SF-TAP-DEST-TLK2-D592V", "sequence-type": "addgene-full", "addgene_id": "218835", - "references": [], "kit": null, "file": "data/addgene_plasmids/218835.addgene-full.gb" }, @@ -117922,7 +148718,10 @@ "plasmid_name": "pAG423GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14414", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -117934,7 +148733,6 @@ "plasmid_name": "PSMA4_miniTurbo_Cterm", "sequence-type": "addgene-full", "addgene_id": "222600", - "references": [], "kit": null, "file": "data/addgene_plasmids/222600.addgene-full.gb" }, @@ -117943,7 +148741,10 @@ "plasmid_name": "pENTR5'_ubi", "sequence-type": "addgene-full", "addgene_id": "27320", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.059345", + "https://www.ncbi.nlm.nih.gov/pubmed/21138979" + ], "kit": null, "file": "data/addgene_plasmids/27320.addgene-full.gb" }, @@ -117952,7 +148753,10 @@ "plasmid_name": "KV001: pMVP (L5-L4) eYFP", "sequence-type": "addgene-full", "addgene_id": "121713", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121713.addgene-full.gb" }, @@ -117961,7 +148765,10 @@ "plasmid_name": "pDONR223_AURKB_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82963", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82963.addgene-full.gb" }, @@ -117970,7 +148777,6 @@ "plasmid_name": "pDONR221_NDUFA6_3UTR", "sequence-type": "depositor-full", "addgene_id": "65863", - "references": [], "kit": null, "file": "data/addgene_plasmids/65863.depositor-full.gb" }, @@ -117979,7 +148785,10 @@ "plasmid_name": "AAEL012796", "sequence-type": "addgene-full", "addgene_id": "115383", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115383.addgene-full.gb" }, @@ -117988,7 +148797,9 @@ "plasmid_name": "pDONR221-SLC25A19", "sequence-type": "addgene-full", "addgene_id": "166209", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166209.addgene-full.gb" }, @@ -117997,7 +148808,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-3", "sequence-type": "depositor-full", "addgene_id": "46690", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46690.depositor-full.gb" }, @@ -118006,7 +148820,6 @@ "plasmid_name": "pFRT-TODestGFP_RNAseH1", "sequence-type": "depositor-full", "addgene_id": "65784", - "references": [], "kit": null, "file": "data/addgene_plasmids/65784.depositor-full.gb" }, @@ -118015,7 +148828,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-irf2bpl A", "sequence-type": "addgene-full", "addgene_id": "89370", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89370.addgene-full.gb" }, @@ -118024,7 +148840,10 @@ "plasmid_name": "pMMACE DEST CMV SpCas9", "sequence-type": "addgene-full", "addgene_id": "206268", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206268.addgene-full.gb" }, @@ -118033,7 +148852,10 @@ "plasmid_name": "p35SZ", "sequence-type": "depositor-full", "addgene_id": "51513", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51513.depositor-full.gb" }, @@ -118042,7 +148864,10 @@ "plasmid_name": "p7142 pHAGE-P-CMVt-N-HA-GAW-ZFYV9", "sequence-type": "addgene-full", "addgene_id": "100162", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100162.addgene-full.gb" }, @@ -118051,7 +148876,10 @@ "plasmid_name": "pDONR223_OR2T33_WT", "sequence-type": "addgene-full", "addgene_id": "81851", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -118063,7 +148891,10 @@ "plasmid_name": "pDONR221-kcnk1b", "sequence-type": "addgene-full", "addgene_id": "208982", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208982.addgene-full.gb" }, @@ -118072,7 +148903,10 @@ "plasmid_name": "pYPQ143-ZmUbi", "sequence-type": "addgene-full", "addgene_id": "138107", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138107.addgene-full.gb" }, @@ -118081,7 +148915,10 @@ "plasmid_name": "pCWXPGR-pTF-betaCatenin", "sequence-type": "addgene-full", "addgene_id": "114281", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2015.01.061", + "https://www.ncbi.nlm.nih.gov/pubmed/25732825" + ], "kit": null, "file": "data/addgene_plasmids/114281.addgene-full.gb" }, @@ -118090,7 +148927,6 @@ "plasmid_name": "R777-E189 Hs.PREX2", "sequence-type": "depositor-full", "addgene_id": "70473", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -118102,7 +148938,10 @@ "plasmid_name": "pMuLE ENTR CMV/TO-miR-30 L1-L4", "sequence-type": "depositor-full", "addgene_id": "62124", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62124.depositor-full.gb" }, @@ -118111,7 +148950,10 @@ "plasmid_name": "pGC291", "sequence-type": "depositor-full", "addgene_id": "19684", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19684.depositor-full.gb" }, @@ -118120,7 +148962,10 @@ "plasmid_name": "pHAGE-BRAF-G466R", "sequence-type": "addgene-full", "addgene_id": "116151", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116151.addgene-full.gb" }, @@ -118129,7 +148974,10 @@ "plasmid_name": "Tol2-kdrl:mCherry-caax", "sequence-type": "addgene-full", "addgene_id": "194287", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049753", + "https://www.ncbi.nlm.nih.gov/pubmed/36398624" + ], "kit": null, "file": "data/addgene_plasmids/194287.addgene-full.gb" }, @@ -118138,7 +148986,9 @@ "plasmid_name": "pDONR221-EIF3D", "sequence-type": "addgene-full", "addgene_id": "166172", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166172.addgene-full.gb" }, @@ -118147,7 +148997,10 @@ "plasmid_name": "TFORF3155", "sequence-type": "addgene-full", "addgene_id": "144631", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144631.addgene-full.gb" }, @@ -118156,7 +149009,10 @@ "plasmid_name": "p3E-rab4b", "sequence-type": "addgene-full", "addgene_id": "109715", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109715.addgene-full.gb" }, @@ -118165,7 +149021,10 @@ "plasmid_name": "pDEST 565-PHL2", "sequence-type": "addgene-full", "addgene_id": "118674", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118674.addgene-full.gb" }, @@ -118174,7 +149033,10 @@ "plasmid_name": "pDONR221-SLC36A3_STOP", "sequence-type": "depositor-full", "addgene_id": "161226", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161226.depositor-full.gb" }, @@ -118183,7 +149045,10 @@ "plasmid_name": "pDONR223_FBXO15_p.E410K", "sequence-type": "addgene-full", "addgene_id": "81405", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -118195,7 +149060,10 @@ "plasmid_name": "LA701: pMVP (L3-L2) P2A-Zeo + WPRE", "sequence-type": "addgene-full", "addgene_id": "121788", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121788.addgene-full.gb" }, @@ -118204,7 +149072,10 @@ "plasmid_name": "pJEP217-Lenti-CMV-GFP-WPRE-pA", "sequence-type": "addgene-full", "addgene_id": "62925", - "references": [], + "references": [ + "https://doi.org/10.1186/s13041-015-0100-7", + "https://www.ncbi.nlm.nih.gov/pubmed/25887710" + ], "kit": null, "file": "data/addgene_plasmids/62925.addgene-full.gb" }, @@ -118213,7 +149084,6 @@ "plasmid_name": "p667-UBC-GFP-V5-TurboID_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135241", - "references": [], "kit": null, "file": "data/addgene_plasmids/135241.addgene-full.gb" }, @@ -118222,7 +149092,10 @@ "plasmid_name": "pDEST40-2XHA-Src-S4-UD-KD", "sequence-type": "addgene-full", "addgene_id": "140300", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140300.addgene-full.gb" }, @@ -118231,7 +149104,10 @@ "plasmid_name": "pSC33", "sequence-type": "addgene-full", "addgene_id": "104807", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104807.addgene-full.gb" }, @@ -118240,7 +149116,10 @@ "plasmid_name": "pJB556", "sequence-type": "addgene-full", "addgene_id": "115966", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115966.addgene-full.gb" }, @@ -118249,7 +149128,6 @@ "plasmid_name": "pSLIK 3xFLAG-NUP37 neo", "sequence-type": "addgene-full", "addgene_id": "220361", - "references": [], "kit": null, "file": "data/addgene_plasmids/220361.addgene-full.gb" }, @@ -118258,7 +149136,6 @@ "plasmid_name": "pENTR_mCherry", "sequence-type": "addgene-full", "addgene_id": "139554", - "references": [], "kit": null, "file": "data/addgene_plasmids/139554.addgene-full.gb" }, @@ -118267,7 +149144,10 @@ "plasmid_name": "pRATIO1212", "sequence-type": "addgene-full", "addgene_id": "141299", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141299.addgene-full.gb" }, @@ -118276,7 +149156,9 @@ "plasmid_name": "pENTR4 AvrRpm1", "sequence-type": "addgene-full", "addgene_id": "209185", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.09.25.558804" + ], "kit": null, "file": "data/addgene_plasmids/209185.addgene-full.gb" }, @@ -118285,7 +149167,10 @@ "plasmid_name": "pENTR_Trf2", "sequence-type": "addgene-full", "addgene_id": "125159", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-019-1210-7", + "https://www.ncbi.nlm.nih.gov/pubmed/31092928" + ], "kit": null, "file": "data/addgene_plasmids/125159.addgene-full.gb" }, @@ -118294,7 +149179,10 @@ "plasmid_name": "pSGE_769_DipB-EcR_dCP", "sequence-type": "depositor-full", "addgene_id": "71222", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71222.depositor-full.gb" }, @@ -118303,7 +149191,10 @@ "plasmid_name": "pcDNA3.2 GW delCMV", "sequence-type": "depositor-full", "addgene_id": "29496", - "references": [], + "references": [ + "https://doi.org/10.1186/scrt52", + "https://www.ncbi.nlm.nih.gov/pubmed/21375737" + ], "kit": null, "file": "data/addgene_plasmids/29496.depositor-full.gb" }, @@ -118312,7 +149203,10 @@ "plasmid_name": "pANG03", "sequence-type": "addgene-full", "addgene_id": "178085", - "references": [], + "references": [ + "https://doi.org/10.1016/j.plasmid.2021.102608", + "https://www.ncbi.nlm.nih.gov/pubmed/34801582" + ], "kit": null, "file": "data/addgene_plasmids/178085.addgene-full.gb" }, @@ -118321,7 +149215,10 @@ "plasmid_name": "pDONR221 Rrp8", "sequence-type": "depositor-full", "addgene_id": "63775", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63775.depositor-full.gb" }, @@ -118330,7 +149227,10 @@ "plasmid_name": "763 pME mApple", "sequence-type": "addgene-full", "addgene_id": "195960", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195960.addgene-full.gb" }, @@ -118339,7 +149239,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Aa1.2", "sequence-type": "addgene-full", "addgene_id": "136373", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/136373.addgene-full.gb" }, @@ -118348,7 +149251,6 @@ "plasmid_name": "R777-E263 Hs.RASSF6", "sequence-type": "depositor-full", "addgene_id": "70547", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -118360,7 +149262,10 @@ "plasmid_name": "pLX317 CALM2", "sequence-type": "addgene-full", "addgene_id": "193684", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2021.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/34990589" + ], "kit": null, "file": "data/addgene_plasmids/193684.addgene-full.gb" }, @@ -118369,7 +149274,10 @@ "plasmid_name": "pDONR221_SLC28A2", "sequence-type": "addgene-full", "addgene_id": "132068", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132068.addgene-full.gb" }, @@ -118378,7 +149286,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-LC3B2-GFP", "sequence-type": "addgene-full", "addgene_id": "123109", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123109.addgene-full.gb" }, @@ -118387,7 +149298,10 @@ "plasmid_name": "pGGEV_8'_Linker", "sequence-type": "depositor-full", "addgene_id": "49294", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -118399,7 +149313,6 @@ "plasmid_name": "pAM-35s-CERK1 D441V-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102403", - "references": [], "kit": null, "file": "data/addgene_plasmids/102403.addgene-full.gb" }, @@ -118408,7 +149321,10 @@ "plasmid_name": "MAC-TFRC", "sequence-type": "addgene-full", "addgene_id": "172420", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172420.addgene-full.gb" }, @@ -118417,7 +149333,6 @@ "plasmid_name": "pAG416GAL10-Bat-SL-CoVZC45_3CL", "sequence-type": "addgene-full", "addgene_id": "201944", - "references": [], "kit": null, "file": "data/addgene_plasmids/201944.addgene-full.gb" }, @@ -118426,7 +149341,10 @@ "plasmid_name": "pHAGE-FLT1-W589*", "sequence-type": "addgene-full", "addgene_id": "116400", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116400.addgene-full.gb" }, @@ -118435,7 +149353,6 @@ "plasmid_name": "IDG_KCNJ14_OE_1", "sequence-type": "addgene-full", "addgene_id": "161691", - "references": [], "kit": null, "file": "data/addgene_plasmids/161691.addgene-full.gb" }, @@ -118444,7 +149361,10 @@ "plasmid_name": "pCOCK CMVwt", "sequence-type": "depositor-full", "addgene_id": "46559", - "references": [], + "references": [ + "https://doi.org/10.1007/s11693-011-9089-0", + "https://www.ncbi.nlm.nih.gov/pubmed/23205156" + ], "kit": null, "file": "data/addgene_plasmids/46559.depositor-full.gb" }, @@ -118453,7 +149373,6 @@ "plasmid_name": "pX458-Ef1a-dCas9-VPR-H2B-mCherry (CRISPRa)", "sequence-type": "addgene-full", "addgene_id": "175572", - "references": [], "kit": null, "file": "data/addgene_plasmids/175572.addgene-full.gb" }, @@ -118462,7 +149381,10 @@ "plasmid_name": "pAAV2ss-U6-sgGFP", "sequence-type": "addgene-full", "addgene_id": "190899", - "references": [], + "references": [ + "https://doi.org/10.1016/j.omtm.2023.03.013", + "https://www.ncbi.nlm.nih.gov/pubmed/37090478" + ], "kit": null, "file": "data/addgene_plasmids/190899.addgene-full.gb" }, @@ -118471,7 +149393,10 @@ "plasmid_name": "pLenti-Lifeact mApple", "sequence-type": "addgene-full", "addgene_id": "187687", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0069378", + "https://www.ncbi.nlm.nih.gov/pubmed/23990882" + ], "kit": null, "file": "data/addgene_plasmids/187687.addgene-full.gb" }, @@ -118480,7 +149405,6 @@ "plasmid_name": "pLIX403-EBFP2-ccdB-NatMx", "sequence-type": "addgene-full", "addgene_id": "158559", - "references": [], "kit": null, "file": "data/addgene_plasmids/158559.addgene-full.gb" }, @@ -118489,7 +149413,10 @@ "plasmid_name": "pHAGE-PTEN-R335*", "sequence-type": "addgene-full", "addgene_id": "116634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116634.addgene-full.gb" }, @@ -118498,7 +149425,10 @@ "plasmid_name": "pENTR-L5-CAG-R3", "sequence-type": "addgene-full", "addgene_id": "141036", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141036.addgene-full.gb" }, @@ -118507,7 +149437,10 @@ "plasmid_name": "C514-E23: attB5r-RU5u-3xFLAG-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162958", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -118519,7 +149452,10 @@ "plasmid_name": "pDONR223_HIF1A_WT", "sequence-type": "addgene-full", "addgene_id": "82129", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82129.addgene-full.gb" }, @@ -118528,7 +149464,10 @@ "plasmid_name": "pDONR223_TNFRSF14_p.A102P", "sequence-type": "addgene-full", "addgene_id": "81360", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -118540,7 +149479,10 @@ "plasmid_name": "pD765 FDFT1 3'UTR", "sequence-type": "addgene-full", "addgene_id": "105765", - "references": [], + "references": [ + "https://doi.org/10.1038/srep40813", + "https://www.ncbi.nlm.nih.gov/pubmed/28102325" + ], "kit": null, "file": "data/addgene_plasmids/105765.addgene-full.gb" }, @@ -118549,7 +149491,10 @@ "plasmid_name": "pENTR-R4R3-2xmRuby-C", "sequence-type": "addgene-full", "addgene_id": "113756", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -118561,7 +149506,10 @@ "plasmid_name": "MKAKU41exp", "sequence-type": "addgene-full", "addgene_id": "131015", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2021.645218", + "https://www.ncbi.nlm.nih.gov/pubmed/33679862" + ], "kit": null, "file": "data/addgene_plasmids/131015.addgene-full.gb" }, @@ -118570,7 +149518,6 @@ "plasmid_name": "R777-E225 Hs.RAPGEF2", "sequence-type": "depositor-full", "addgene_id": "70509", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -118582,7 +149529,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NI_G1397-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171726", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171726.addgene-full.gb" }, @@ -118591,7 +149541,6 @@ "plasmid_name": "p3E_he1a:eYFP", "sequence-type": "addgene-full", "addgene_id": "113879", - "references": [], "kit": null, "file": "data/addgene_plasmids/113879.addgene-full.gb" }, @@ -118600,7 +149549,6 @@ "plasmid_name": "BRAF - R671Q in pENTR", "sequence-type": "addgene-full", "addgene_id": "216615", - "references": [], "kit": null, "file": "data/addgene_plasmids/216615.addgene-full.gb" }, @@ -118609,7 +149557,10 @@ "plasmid_name": "BirA-Myc_N_MYC", "sequence-type": "addgene-full", "addgene_id": "167715", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167715.addgene-full.gb" }, @@ -118618,7 +149569,10 @@ "plasmid_name": "pENTR223-PRDX5K85R", "sequence-type": "addgene-full", "addgene_id": "98694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2017.10.010", + "https://www.ncbi.nlm.nih.gov/pubmed/29128334" + ], "kit": null, "file": "data/addgene_plasmids/98694.addgene-full.gb" }, @@ -118627,7 +149581,10 @@ "plasmid_name": "pDONR223_BAMBI_WT", "sequence-type": "addgene-full", "addgene_id": "82252", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82252.addgene-full.gb" }, @@ -118636,7 +149593,6 @@ "plasmid_name": "R777-E009 Hs.ARAF", "sequence-type": "depositor-full", "addgene_id": "70293", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -118648,7 +149604,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0389-luc2", "sequence-type": "addgene-full", "addgene_id": "214625", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214625.addgene-full.gb" }, @@ -118657,7 +149616,9 @@ "plasmid_name": "pTwist-msEEA1", "sequence-type": "addgene-full", "addgene_id": "214991", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/214991.addgene-full.gb" }, @@ -118666,7 +149627,10 @@ "plasmid_name": "pWS625", "sequence-type": "addgene-full", "addgene_id": "123046", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123046.addgene-full.gb" }, @@ -118675,7 +149639,10 @@ "plasmid_name": "pDONR221_SLC29A3", "sequence-type": "addgene-full", "addgene_id": "132127", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132127.addgene-full.gb" }, @@ -118684,7 +149651,9 @@ "plasmid_name": "pcDNA5-miniTurbo-TAF5-FL", "sequence-type": "addgene-full", "addgene_id": "209051", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209051.addgene-full.gb" }, @@ -118693,7 +149662,10 @@ "plasmid_name": "pDONR221_SLC52A1", "sequence-type": "depositor-full", "addgene_id": "132169", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132169.depositor-full.gb" }, @@ -118702,7 +149674,10 @@ "plasmid_name": "pLX304-EZH1-dPSET", "sequence-type": "addgene-full", "addgene_id": "203586", - "references": [], + "references": [ + "https://doi.org/10.1126/scitranslmed.aal5272", + "https://www.ncbi.nlm.nih.gov/pubmed/28701475" + ], "kit": null, "file": "data/addgene_plasmids/203586.addgene-full.gb" }, @@ -118711,7 +149686,6 @@ "plasmid_name": "IDG_FXYD7_OE_1", "sequence-type": "addgene-full", "addgene_id": "161637", - "references": [], "kit": null, "file": "data/addgene_plasmids/161637.addgene-full.gb" }, @@ -118720,7 +149694,10 @@ "plasmid_name": "pDONR223-ZNF674", "sequence-type": "addgene-full", "addgene_id": "88785", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88785.addgene-full.gb" }, @@ -118729,7 +149706,10 @@ "plasmid_name": "pMx/ATP10A(E203Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209258", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209258.addgene-full.gb" }, @@ -118738,7 +149718,10 @@ "plasmid_name": "pENTR-actin-V159N", "sequence-type": "addgene-full", "addgene_id": "118383", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118383.addgene-full.gb" }, @@ -118747,7 +149730,10 @@ "plasmid_name": "pHAGE-GALNTL6", "sequence-type": "addgene-full", "addgene_id": "116746", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116746.addgene-full.gb" }, @@ -118756,7 +149742,10 @@ "plasmid_name": "TRPM2_pCSdest", "sequence-type": "addgene-full", "addgene_id": "53920", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.118.200144", + "https://www.ncbi.nlm.nih.gov/pubmed/29760202" + ], "kit": null, "file": "data/addgene_plasmids/53920.addgene-full.gb" }, @@ -118765,7 +149754,10 @@ "plasmid_name": "pYPQ291", "sequence-type": "addgene-full", "addgene_id": "129671", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129671.addgene-full.gb" }, @@ -118774,7 +149766,10 @@ "plasmid_name": "pDONR223_STK11_WT", "sequence-type": "addgene-full", "addgene_id": "82320", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82320.addgene-full.gb" }, @@ -118783,7 +149778,10 @@ "plasmid_name": "pQCXIZ CMV/TO DEST (w321-2)", "sequence-type": "depositor-full", "addgene_id": "17401", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17401.depositor-full.gb" }, @@ -118792,7 +149790,10 @@ "plasmid_name": "pCM1.128", "sequence-type": "depositor-full", "addgene_id": "21385", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21385.depositor-full.gb" }, @@ -118801,7 +149802,10 @@ "plasmid_name": "W118-1_hTGM3-Flag", "sequence-type": "addgene-full", "addgene_id": "180408", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180408.addgene-full.gb" }, @@ -118810,7 +149814,6 @@ "plasmid_name": "pPyCAG-Nanog(T100A)-IP", "sequence-type": "depositor-full", "addgene_id": "62989", - "references": [], "kit": null, "file": "data/addgene_plasmids/62989.depositor-full.gb" }, @@ -118819,7 +149822,10 @@ "plasmid_name": "VanGlow-RR-DSCP", "sequence-type": "depositor-full", "addgene_id": "83339", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.01.014", + "https://www.ncbi.nlm.nih.gov/pubmed/28245922" + ], "kit": null, "file": "data/addgene_plasmids/83339.depositor-full.gb" }, @@ -118828,7 +149834,6 @@ "plasmid_name": "pDONR221-HMGN1-SE", "sequence-type": "addgene-full", "addgene_id": "192720", - "references": [], "kit": null, "file": "data/addgene_plasmids/192720.addgene-full.gb" }, @@ -118837,7 +149842,10 @@ "plasmid_name": "pPB-cT3G-cERP2-TCF21", "sequence-type": "addgene-full", "addgene_id": "192894", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192894.addgene-full.gb" }, @@ -118846,7 +149854,10 @@ "plasmid_name": "pAG413GPD-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14310", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -118858,7 +149869,10 @@ "plasmid_name": "pDONR221_SLC25A6", "sequence-type": "addgene-full", "addgene_id": "132055", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132055.addgene-full.gb" }, @@ -118867,7 +149881,10 @@ "plasmid_name": "PTPRA_C433S-SHC", "sequence-type": "addgene-full", "addgene_id": "139612", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139612.addgene-full.gb" }, @@ -118876,7 +149893,10 @@ "plasmid_name": "pGWB414", "sequence-type": "depositor-full", "addgene_id": "74808", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74808.depositor-full.gb" }, @@ -118885,7 +149905,6 @@ "plasmid_name": "pDEST26-hTLR4-Nluc", "sequence-type": "addgene-full", "addgene_id": "197642", - "references": [], "kit": null, "file": "data/addgene_plasmids/197642.addgene-full.gb" }, @@ -118894,7 +149913,10 @@ "plasmid_name": "pDONR223_B2M_p.M1I", "sequence-type": "addgene-full", "addgene_id": "81289", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -118906,7 +149928,6 @@ "plasmid_name": "R777-E055 Hs.EIF4EBP1", "sequence-type": "depositor-full", "addgene_id": "70339", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -118918,7 +149939,10 @@ "plasmid_name": "pDONR221_SLC52A3", "sequence-type": "addgene-full", "addgene_id": "132181", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132181.addgene-full.gb" }, @@ -118927,7 +149951,9 @@ "plasmid_name": "pLX317-hcRED", "sequence-type": "addgene-full", "addgene_id": "115440", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/30059005" + ], "kit": null, "file": "data/addgene_plasmids/115440.addgene-full.gb" }, @@ -118936,7 +149962,10 @@ "plasmid_name": "pENTR221-Renilla", "sequence-type": "addgene-full", "addgene_id": "79496", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79496.addgene-full.gb" }, @@ -118945,7 +149974,10 @@ "plasmid_name": "pHAGE-PPP2R1A-V525A", "sequence-type": "addgene-full", "addgene_id": "116609", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116609.addgene-full.gb" }, @@ -118954,7 +149986,6 @@ "plasmid_name": "pLIX403-ccdB-EYFP", "sequence-type": "addgene-full", "addgene_id": "158564", - "references": [], "kit": null, "file": "data/addgene_plasmids/158564.addgene-full.gb" }, @@ -118963,7 +149994,10 @@ "plasmid_name": "pENTR223-LF1", "sequence-type": "addgene-full", "addgene_id": "195812", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195812.addgene-full.gb" }, @@ -118972,7 +150006,6 @@ "plasmid_name": "R777-E326 Hs.SPRED3-nostop", "sequence-type": "depositor-full", "addgene_id": "70610", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -118984,7 +150017,10 @@ "plasmid_name": "pLenti6.2-Renilla-ccdB", "sequence-type": "addgene-full", "addgene_id": "87076", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.06.047", + "https://www.ncbi.nlm.nih.gov/pubmed/22939624" + ], "kit": null, "file": "data/addgene_plasmids/87076.addgene-full.gb" }, @@ -118993,7 +150029,10 @@ "plasmid_name": "C514-E54: attB5r-RBS-His6-Halotag-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162965", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -119005,7 +150044,10 @@ "plasmid_name": "pMH-EF1-GFP", "sequence-type": "addgene-full", "addgene_id": "133018", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2002193117", + "https://www.ncbi.nlm.nih.gov/pubmed/32611815" + ], "kit": null, "file": "data/addgene_plasmids/133018.addgene-full.gb" }, @@ -119014,7 +150056,10 @@ "plasmid_name": "LIIbeta R 2-3", "sequence-type": "depositor-full", "addgene_id": "54359", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54359.depositor-full.gb" }, @@ -119023,7 +150068,10 @@ "plasmid_name": "p8325 pLIX YAP1 WT", "sequence-type": "addgene-full", "addgene_id": "184527", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184527.addgene-full.gb" }, @@ -119032,7 +150080,10 @@ "plasmid_name": "pDONR223_ERBB3_WT", "sequence-type": "addgene-full", "addgene_id": "82114", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82114.addgene-full.gb" }, @@ -119041,7 +150092,10 @@ "plasmid_name": "MAC_N_TLX3", "sequence-type": "addgene-full", "addgene_id": "167807", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167807.addgene-full.gb" }, @@ -119050,7 +150104,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2 _NSP1", "sequence-type": "addgene-full", "addgene_id": "169376", - "references": [], "kit": null, "file": "data/addgene_plasmids/169376.addgene-full.gb" }, @@ -119059,7 +150112,10 @@ "plasmid_name": "JAM2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176966", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176966.addgene-full.gb" }, @@ -119068,7 +150124,10 @@ "plasmid_name": "pEXPqcxip-hFTSJ3-FLAG", "sequence-type": "addgene-full", "addgene_id": "165463", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1322545111", + "https://www.ncbi.nlm.nih.gov/pubmed/24778252" + ], "kit": null, "file": "data/addgene_plasmids/165463.addgene-full.gb" }, @@ -119077,7 +150136,10 @@ "plasmid_name": "pDONR221_SLCO6A1", "sequence-type": "addgene-full", "addgene_id": "132261", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132261.addgene-full.gb" }, @@ -119086,7 +150148,6 @@ "plasmid_name": "pREP42xV5_ccdB", "sequence-type": "depositor-full", "addgene_id": "79018", - "references": [], "kit": null, "file": "data/addgene_plasmids/79018.depositor-full.gb" }, @@ -119095,7 +150156,10 @@ "plasmid_name": "pcDNA 3.2/V5-DEST SNAP29-V5", "sequence-type": "depositor-full", "addgene_id": "69821", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cmet.2015.09.009", + "https://www.ncbi.nlm.nih.gov/pubmed/26456332" + ], "kit": null, "file": "data/addgene_plasmids/69821.depositor-full.gb" }, @@ -119104,7 +150168,10 @@ "plasmid_name": "pHAGE-PIK3CD-P864L", "sequence-type": "addgene-full", "addgene_id": "116572", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116572.addgene-full.gb" }, @@ -119113,7 +150180,10 @@ "plasmid_name": "pDONR223_FCGR3B_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83016", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83016.addgene-full.gb" }, @@ -119122,7 +150192,10 @@ "plasmid_name": "pGWB504", "sequence-type": "depositor-full", "addgene_id": "74846", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74846.depositor-full.gb" }, @@ -119131,7 +150204,10 @@ "plasmid_name": "BirA-Myc_N_TAL1", "sequence-type": "addgene-full", "addgene_id": "167728", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167728.addgene-full.gb" }, @@ -119140,7 +150216,10 @@ "plasmid_name": "tetO-AKT1", "sequence-type": "addgene-full", "addgene_id": "170682", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170682.addgene-full.gb" }, @@ -119149,7 +150228,10 @@ "plasmid_name": "pENTR_L1-BirA(R118G)-YFP-NLS-STOP-L2", "sequence-type": "addgene-full", "addgene_id": "127360", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127360.addgene-full.gb" }, @@ -119158,7 +150240,10 @@ "plasmid_name": "pFRT/TO/FLAG/HA-DEST PABPC4", "sequence-type": "addgene-full", "addgene_id": "19882", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1351608", + "https://www.ncbi.nlm.nih.gov/pubmed/18978028" + ], "kit": null, "file": "data/addgene_plasmids/19882.addgene-full.gb" }, @@ -119167,7 +150252,10 @@ "plasmid_name": "pSGE_719_S2-1_GATA-to-ETS21C", "sequence-type": "depositor-full", "addgene_id": "71175", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71175.depositor-full.gb" }, @@ -119176,7 +150264,10 @@ "plasmid_name": "pT2-cryR;dll4CE2-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90147", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90147.addgene-full.gb" }, @@ -119197,7 +150288,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0374-luc2", "sequence-type": "addgene-full", "addgene_id": "214618", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214618.addgene-full.gb" }, @@ -119206,7 +150300,10 @@ "plasmid_name": "pENTR L5-GAL4-L2", "sequence-type": "depositor-full", "addgene_id": "32304", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32304.depositor-full.gb" }, @@ -119215,7 +150312,10 @@ "plasmid_name": "pR26 CAG/GFP Dest", "sequence-type": "addgene-full", "addgene_id": "74281", - "references": [], + "references": [ + "https://doi.org/10.1186/s12896-016-0234-4", + "https://www.ncbi.nlm.nih.gov/pubmed/26772810" + ], "kit": null, "file": "data/addgene_plasmids/74281.addgene-full.gb" }, @@ -119224,7 +150324,6 @@ "plasmid_name": "R777-E093 Hs.FNTA", "sequence-type": "depositor-full", "addgene_id": "70377", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -119236,7 +150335,10 @@ "plasmid_name": "pEAHISPA4511", "sequence-type": "addgene-full", "addgene_id": "97015", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97015.addgene-full.gb" }, @@ -119245,7 +150347,10 @@ "plasmid_name": "pHAGE-TBC1D3B-G164E", "sequence-type": "addgene-full", "addgene_id": "116692", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116692.addgene-full.gb" }, @@ -119254,7 +150359,10 @@ "plasmid_name": "pCFJ2474 - pEXP[Psmu-2 | cas9(PATCs) | gpd-2 tagRFP-T(myr, patcs) smu-1 UTR]", "sequence-type": "addgene-full", "addgene_id": "159816", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159816.addgene-full.gb" }, @@ -119263,7 +150371,6 @@ "plasmid_name": "pAG416GAL10-YES1-6stop", "sequence-type": "addgene-full", "addgene_id": "203476", - "references": [], "kit": null, "file": "data/addgene_plasmids/203476.addgene-full.gb" }, @@ -119272,7 +150379,10 @@ "plasmid_name": "pHAGE-PIK3CB-K290N", "sequence-type": "addgene-full", "addgene_id": "116556", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116556.addgene-full.gb" }, @@ -119281,7 +150391,10 @@ "plasmid_name": "pDONR221 Nsr1", "sequence-type": "depositor-full", "addgene_id": "63769", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63769.depositor-full.gb" }, @@ -119290,7 +150403,10 @@ "plasmid_name": "pCZGY3196", "sequence-type": "addgene-full", "addgene_id": "172696", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26376", + "https://www.ncbi.nlm.nih.gov/pubmed/28767038" + ], "kit": null, "file": "data/addgene_plasmids/172696.addgene-full.gb" }, @@ -119299,7 +150415,9 @@ "plasmid_name": "pDONR223-TAF5-\u2206ex8", "sequence-type": "addgene-full", "addgene_id": "209048", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209048.addgene-full.gb" }, @@ -119308,7 +150426,6 @@ "plasmid_name": "pcDNA3.1-ccdB-TwinStrep", "sequence-type": "addgene-full", "addgene_id": "214988", - "references": [], "kit": null, "file": "data/addgene_plasmids/214988.addgene-full.gb" }, @@ -119317,7 +150434,10 @@ "plasmid_name": "pDONR221-SLCO6A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161427", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161427.addgene-full.gb" }, @@ -119338,7 +150458,10 @@ "plasmid_name": "pT2-cryR;mafbbP1Egfp", "sequence-type": "addgene-full", "addgene_id": "90163", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90163.addgene-full.gb" }, @@ -119347,7 +150470,10 @@ "plasmid_name": "pENTR223-BSLF1", "sequence-type": "addgene-full", "addgene_id": "195836", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195836.addgene-full.gb" }, @@ -119356,7 +150482,10 @@ "plasmid_name": "pENTR223-BSRF1", "sequence-type": "addgene-full", "addgene_id": "195782", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195782.addgene-full.gb" }, @@ -119365,7 +150494,10 @@ "plasmid_name": "C512-E04: attB5r-mCherry-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162941", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -119377,7 +150509,10 @@ "plasmid_name": "pCellFree_G08", "sequence-type": "depositor-full", "addgene_id": "67142", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jbiotec.2014.12.006", + "https://www.ncbi.nlm.nih.gov/pubmed/25529348" + ], "kit": null, "file": "data/addgene_plasmids/67142.depositor-full.gb" }, @@ -119386,7 +150521,6 @@ "plasmid_name": "DDX3X - E186A in pENTR", "sequence-type": "addgene-full", "addgene_id": "216577", - "references": [], "kit": null, "file": "data/addgene_plasmids/216577.addgene-full.gb" }, @@ -119395,7 +150529,10 @@ "plasmid_name": "pDEST-Myc-FBW7 Delta F-Box", "sequence-type": "addgene-full", "addgene_id": "197452", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22319-5", + "https://www.ncbi.nlm.nih.gov/pubmed/33824312" + ], "kit": null, "file": "data/addgene_plasmids/197452.addgene-full.gb" }, @@ -119404,7 +150541,10 @@ "plasmid_name": "pDONR221_SLC7A9", "sequence-type": "addgene-full", "addgene_id": "132245", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132245.addgene-full.gb" }, @@ -119413,7 +150553,10 @@ "plasmid_name": "pJW4.16", "sequence-type": "depositor-full", "addgene_id": "62871", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62871.depositor-full.gb" }, @@ -119422,7 +150565,10 @@ "plasmid_name": "pJRA-GW", "sequence-type": "addgene-full", "addgene_id": "209333", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-3558280/v1", + "https://www.ncbi.nlm.nih.gov/pubmed/37986897" + ], "kit": null, "file": "data/addgene_plasmids/209333.addgene-full.gb" }, @@ -119431,7 +150577,10 @@ "plasmid_name": "pDONR223_HSP90B1_WT", "sequence-type": "addgene-full", "addgene_id": "82130", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82130.addgene-full.gb" }, @@ -119440,7 +150589,10 @@ "plasmid_name": "pDONR223_TP53_p.S215I", "sequence-type": "addgene-full", "addgene_id": "81379", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -119452,7 +150604,10 @@ "plasmid_name": "pCR8/GW/TOPO-ELK1", "sequence-type": "addgene-full", "addgene_id": "98616", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98616.addgene-full.gb" }, @@ -119461,7 +150616,6 @@ "plasmid_name": "g6s pDONR", "sequence-type": "addgene-full", "addgene_id": "117454", - "references": [], "kit": null, "file": "data/addgene_plasmids/117454.addgene-full.gb" }, @@ -119470,7 +150624,10 @@ "plasmid_name": "BACE2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176942", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176942.addgene-full.gb" }, @@ -119479,7 +150636,10 @@ "plasmid_name": "pGGEV_2'_Linker", "sequence-type": "depositor-full", "addgene_id": "49288", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -119491,7 +150651,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-LC3C-GFP", "sequence-type": "addgene-full", "addgene_id": "123110", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123110.addgene-full.gb" }, @@ -119500,7 +150663,10 @@ "plasmid_name": "pENTR-mOvol1", "sequence-type": "addgene-full", "addgene_id": "120359", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2018.12.008", + "https://www.ncbi.nlm.nih.gov/pubmed/30639212" + ], "kit": null, "file": "data/addgene_plasmids/120359.addgene-full.gb" }, @@ -119509,7 +150675,10 @@ "plasmid_name": "pZA16", "sequence-type": "addgene-full", "addgene_id": "158494", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158494.addgene-full.gb" }, @@ -119518,7 +150687,10 @@ "plasmid_name": "pDONR221_SLC38A11", "sequence-type": "addgene-full", "addgene_id": "132071", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132071.addgene-full.gb" }, @@ -119527,7 +150699,10 @@ "plasmid_name": "p2R3a-TagRFP-OcsT", "sequence-type": "depositor-full", "addgene_id": "71270", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71270.depositor-full.gb" }, @@ -119536,7 +150711,10 @@ "plasmid_name": "pENTR macroH2A1.2-C", "sequence-type": "depositor-full", "addgene_id": "30512", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2011.144", + "https://www.ncbi.nlm.nih.gov/pubmed/21552206" + ], "kit": null, "file": "data/addgene_plasmids/30512.depositor-full.gb" }, @@ -119545,7 +150723,10 @@ "plasmid_name": "C122-E15: mOrange", "sequence-type": "addgene-full", "addgene_id": "162895", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -119557,7 +150738,6 @@ "plasmid_name": "IDG_CHRND_OE_1", "sequence-type": "addgene-full", "addgene_id": "161688", - "references": [], "kit": null, "file": "data/addgene_plasmids/161688.addgene-full.gb" }, @@ -119566,7 +150746,10 @@ "plasmid_name": "pHAGE-IGF1R-S729S", "sequence-type": "addgene-full", "addgene_id": "116419", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116419.addgene-full.gb" }, @@ -119575,7 +150758,10 @@ "plasmid_name": "PE_24: Prhl_tet_eG::sfYFP", "sequence-type": "addgene-full", "addgene_id": "104885", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104885.addgene-full.gb" }, @@ -119584,7 +150770,10 @@ "plasmid_name": "pDONR223-ROR2", "sequence-type": "addgene-full", "addgene_id": "23927", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -119596,7 +150785,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF9B", "sequence-type": "addgene-full", "addgene_id": "141280", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141280.addgene-full.gb" }, @@ -119605,7 +150797,10 @@ "plasmid_name": "PE_07: Plas_tet_bD", "sequence-type": "addgene-full", "addgene_id": "113600", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113600.addgene-full.gb" }, @@ -119614,7 +150809,10 @@ "plasmid_name": "pDONR223-MAP3K7", "sequence-type": "addgene-full", "addgene_id": "23693", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -119626,7 +150824,10 @@ "plasmid_name": "pENTR-GFP-WT1 -KTS N terminal HA", "sequence-type": "addgene-full", "addgene_id": "217641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2021.109010", + "https://www.ncbi.nlm.nih.gov/pubmed/33882316" + ], "kit": null, "file": "data/addgene_plasmids/217641.addgene-full.gb" }, @@ -119635,7 +150836,10 @@ "plasmid_name": "pDEST40-2XFL-Src-Y530F", "sequence-type": "addgene-full", "addgene_id": "140319", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140319.addgene-full.gb" }, @@ -119644,7 +150848,10 @@ "plasmid_name": "pLenti-sgRNA-lib 2.0", "sequence-type": "addgene-full", "addgene_id": "89638", - "references": [], + "references": [ + "https://doi.org/10.1038/nbt.3715", + "https://www.ncbi.nlm.nih.gov/pubmed/27798563" + ], "kit": null, "file": "data/addgene_plasmids/89638.addgene-full.gb" }, @@ -119653,7 +150860,6 @@ "plasmid_name": "p667-UBC-BRSK1-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135258", - "references": [], "kit": null, "file": "data/addgene_plasmids/135258.addgene-full.gb" }, @@ -119662,7 +150868,10 @@ "plasmid_name": "pCK005 ubi:mCerulean_ubb-polyA", "sequence-type": "addgene-full", "addgene_id": "195979", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195979.addgene-full.gb" }, @@ -119671,7 +150880,6 @@ "plasmid_name": "R777-E231 Hs.RASA3", "sequence-type": "depositor-full", "addgene_id": "70515", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -119683,7 +150891,10 @@ "plasmid_name": "pHAGE-MET", "sequence-type": "addgene-full", "addgene_id": "116762", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116762.addgene-full.gb" }, @@ -119692,7 +150903,9 @@ "plasmid_name": "acta2_mCherry_pA_pDestTolpA2", "sequence-type": "depositor-full", "addgene_id": "78685", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24594685" + ], "kit": null, "file": "data/addgene_plasmids/78685.depositor-full.gb" }, @@ -119701,7 +150914,10 @@ "plasmid_name": "pLX302 Luciferase-V5 puro", "sequence-type": "addgene-full", "addgene_id": "47553", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.2003624", + "https://www.ncbi.nlm.nih.gov/pubmed/23921087" + ], "kit": null, "file": "data/addgene_plasmids/47553.addgene-full.gb" }, @@ -119710,7 +150926,10 @@ "plasmid_name": "pME-Fv2E-flt4um200-ns", "sequence-type": "depositor-full", "addgene_id": "67696", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "file": "data/addgene_plasmids/67696.depositor-full.gb" }, @@ -119719,7 +150938,10 @@ "plasmid_name": "pAG414GPD-TpCYP722C(pYL851)", "sequence-type": "addgene-full", "addgene_id": "178295", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abh4048", + "https://www.ncbi.nlm.nih.gov/pubmed/34533983" + ], "kit": null, "file": "data/addgene_plasmids/178295.addgene-full.gb" }, @@ -119728,7 +150950,10 @@ "plasmid_name": "pDONR223_BRCA1_WT", "sequence-type": "addgene-full", "addgene_id": "82196", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82196.addgene-full.gb" }, @@ -119737,7 +150962,10 @@ "plasmid_name": "pDONR221_SLC2A1", "sequence-type": "addgene-full", "addgene_id": "132103", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132103.addgene-full.gb" }, @@ -119746,7 +150974,10 @@ "plasmid_name": "CHMP6_GFP", "sequence-type": "addgene-full", "addgene_id": "31806", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1201847", + "https://www.ncbi.nlm.nih.gov/pubmed/21310966" + ], "kit": null, "file": "data/addgene_plasmids/31806.addgene-full.gb" }, @@ -119755,7 +150986,9 @@ "plasmid_name": "pMpGWB205", "sequence-type": "depositor-full", "addgene_id": "68596", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68596.depositor-full.gb" }, @@ -119764,7 +150997,10 @@ "plasmid_name": "pWS510", "sequence-type": "addgene-full", "addgene_id": "123062", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123062.addgene-full.gb" }, @@ -119773,7 +151009,6 @@ "plasmid_name": "R777-E358 Hs.VAV1-nostop", "sequence-type": "depositor-full", "addgene_id": "70642", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -119785,7 +151020,10 @@ "plasmid_name": "pDONR223_RHEB_WT", "sequence-type": "addgene-full", "addgene_id": "82276", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82276.addgene-full.gb" }, @@ -119794,7 +151032,6 @@ "plasmid_name": "pProkR2.Cre.T2A.Venus", "sequence-type": "addgene-full", "addgene_id": "169014", - "references": [], "kit": null, "file": "data/addgene_plasmids/169014.addgene-full.gb" }, @@ -119803,7 +151040,10 @@ "plasmid_name": "pHAGE-eGFP-OPTN D474N", "sequence-type": "addgene-full", "addgene_id": "175762", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175762.addgene-full.gb" }, @@ -119812,7 +151052,10 @@ "plasmid_name": "pENTR/pSM2(U6) (w51-1)", "sequence-type": "depositor-full", "addgene_id": "17387", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17387.depositor-full.gb" }, @@ -119821,7 +151064,10 @@ "plasmid_name": "Flag-HA-USP26", "sequence-type": "addgene-full", "addgene_id": "22598", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22598.addgene-full.gb" }, @@ -119830,7 +151076,10 @@ "plasmid_name": "pATD", "sequence-type": "addgene-full", "addgene_id": "141012", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141012.addgene-full.gb" }, @@ -119839,7 +151088,6 @@ "plasmid_name": "R777-E041 Hs.DUSP5", "sequence-type": "depositor-full", "addgene_id": "70325", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -119851,7 +151099,10 @@ "plasmid_name": "pDONR221_SLC8B1", "sequence-type": "addgene-full", "addgene_id": "132198", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132198.addgene-full.gb" }, @@ -119860,7 +151111,10 @@ "plasmid_name": "pcDNA5FRT/TO-Cezanne-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113492", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113492.addgene-full.gb" }, @@ -119869,7 +151123,10 @@ "plasmid_name": "pWZL Neo Myr Flag TBK1", "sequence-type": "addgene-full", "addgene_id": "20648", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.03.052", + "https://www.ncbi.nlm.nih.gov/pubmed/17574021" + ], "kit": null, "file": "data/addgene_plasmids/20648.addgene-full.gb" }, @@ -119878,7 +151135,10 @@ "plasmid_name": "pDONR221-ANKH", "sequence-type": "addgene-full", "addgene_id": "132278", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132278.addgene-full.gb" }, @@ -119887,7 +151147,10 @@ "plasmid_name": "pDONR221-ZNF385A", "sequence-type": "depositor-full", "addgene_id": "101615", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101615.depositor-full.gb" }, @@ -119896,7 +151159,10 @@ "plasmid_name": "pMXs-NKX6.1", "sequence-type": "addgene-full", "addgene_id": "32934", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2011.07.014", + "https://www.ncbi.nlm.nih.gov/pubmed/21852222" + ], "kit": null, "file": "data/addgene_plasmids/32934.addgene-full.gb" }, @@ -119905,7 +151171,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PIP5K1C_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170600", - "references": [], "kit": null, "file": "data/addgene_plasmids/170600.addgene-full.gb" }, @@ -119914,7 +151179,10 @@ "plasmid_name": "pMOD_B-Pho2-1/2-2-tRNA", "sequence-type": "addgene-full", "addgene_id": "161761", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac096", + "https://www.ncbi.nlm.nih.gov/pubmed/35471600" + ], "kit": null, "file": "data/addgene_plasmids/161761.addgene-full.gb" }, @@ -119923,7 +151191,10 @@ "plasmid_name": "pGWB420", "sequence-type": "depositor-full", "addgene_id": "74814", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74814.depositor-full.gb" }, @@ -119932,7 +151203,10 @@ "plasmid_name": "pDONR223_TNF_p.S157R", "sequence-type": "addgene-full", "addgene_id": "81344", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -119944,7 +151218,6 @@ "plasmid_name": "g11s pD42", "sequence-type": "addgene-full", "addgene_id": "117469", - "references": [], "kit": null, "file": "data/addgene_plasmids/117469.addgene-full.gb" }, @@ -119953,7 +151226,10 @@ "plasmid_name": "pFUGW-Pol2-ffLuc2-eGFP", "sequence-type": "depositor-full", "addgene_id": "71394", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1755-148X.2009.00545.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19175523" + ], "kit": null, "file": "data/addgene_plasmids/71394.depositor-full.gb" }, @@ -119962,7 +151238,6 @@ "plasmid_name": "pLV UbC6-ARRET", "sequence-type": "depositor-full", "addgene_id": "111378", - "references": [], "kit": null, "file": "data/addgene_plasmids/111378.depositor-full.gb" }, @@ -119971,7 +151246,10 @@ "plasmid_name": "pMLS360", "sequence-type": "depositor-full", "addgene_id": "73687", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.115.184275", + "https://www.ncbi.nlm.nih.gov/pubmed/26837755" + ], "kit": null, "file": "data/addgene_plasmids/73687.depositor-full.gb" }, @@ -119980,7 +151258,6 @@ "plasmid_name": "EV-D68 2A protease; 6xHis-SUMO, low expression levels", "sequence-type": "addgene-full", "addgene_id": "204802", - "references": [], "kit": null, "file": "data/addgene_plasmids/204802.addgene-full.gb" }, @@ -119989,7 +151266,6 @@ "plasmid_name": "pDONR221-ncam2", "sequence-type": "addgene-full", "addgene_id": "192739", - "references": [], "kit": null, "file": "data/addgene_plasmids/192739.addgene-full.gb" }, @@ -119998,7 +151274,10 @@ "plasmid_name": "W118-1_hTGM6-Flag", "sequence-type": "addgene-full", "addgene_id": "180411", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180411.addgene-full.gb" }, @@ -120007,7 +151286,10 @@ "plasmid_name": "MAC_N_TBG1", "sequence-type": "addgene-full", "addgene_id": "111696", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111696.addgene-full.gb" }, @@ -120016,7 +151298,6 @@ "plasmid_name": "pAG426GAL-HCV_NS3-GS-NS4A", "sequence-type": "addgene-full", "addgene_id": "203504", - "references": [], "kit": null, "file": "data/addgene_plasmids/203504.addgene-full.gb" }, @@ -120025,7 +151306,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBE2QL1-CS-Strep/HA", "sequence-type": "addgene-full", "addgene_id": "129513", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "file": "data/addgene_plasmids/129513.addgene-full.gb" }, @@ -120034,7 +151318,10 @@ "plasmid_name": "pDONR223-DYRK3", "sequence-type": "addgene-full", "addgene_id": "23635", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -120046,7 +151333,10 @@ "plasmid_name": "pHAGE-KRAS-G12V", "sequence-type": "addgene-full", "addgene_id": "116424", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116424.addgene-full.gb" }, @@ -120055,7 +151345,10 @@ "plasmid_name": "pYPQ-NF-L3-NF-L1-dMb2Cas12a", "sequence-type": "addgene-full", "addgene_id": "177686", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.202100571", + "https://www.ncbi.nlm.nih.gov/pubmed/35377968" + ], "kit": null, "file": "data/addgene_plasmids/177686.addgene-full.gb" }, @@ -120064,7 +151357,10 @@ "plasmid_name": "pCAG/ATP8B1(E234Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209241", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.593012", + "https://www.ncbi.nlm.nih.gov/pubmed/25315773" + ], "kit": null, "file": "data/addgene_plasmids/209241.addgene-full.gb" }, @@ -120073,7 +151369,10 @@ "plasmid_name": "pTW099", "sequence-type": "addgene-full", "addgene_id": "115942", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115942.addgene-full.gb" }, @@ -120082,7 +151381,10 @@ "plasmid_name": "pSGE_91_4xUAS_dCP", "sequence-type": "depositor-full", "addgene_id": "71169", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71169.depositor-full.gb" }, @@ -120091,7 +151393,6 @@ "plasmid_name": "pSC49", "sequence-type": "addgene-full", "addgene_id": "104823", - "references": [], "kit": null, "file": "data/addgene_plasmids/104823.addgene-full.gb" }, @@ -120100,7 +151401,10 @@ "plasmid_name": "pDESTsvaw", "sequence-type": "depositor-full", "addgene_id": "32318", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0024531", + "https://www.ncbi.nlm.nih.gov/pubmed/21931740" + ], "kit": null, "file": "data/addgene_plasmids/32318.depositor-full.gb" }, @@ -120109,7 +151413,6 @@ "plasmid_name": "p663-UBC-V5-eGFP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135265", - "references": [], "kit": null, "file": "data/addgene_plasmids/135265.addgene-full.gb" }, @@ -120118,7 +151421,10 @@ "plasmid_name": "pDONR221-PARP15", "sequence-type": "addgene-full", "addgene_id": "184471", - "references": [], + "references": [ + "https://doi.org/10.26508/lsa.202201455", + "https://www.ncbi.nlm.nih.gov/pubmed/36368907" + ], "kit": null, "file": "data/addgene_plasmids/184471.addgene-full.gb" }, @@ -120127,7 +151433,10 @@ "plasmid_name": "pGGDestSC-ATG", "sequence-type": "depositor-full", "addgene_id": "49322", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -120139,7 +151448,10 @@ "plasmid_name": "pENTR/pTER+ (430-1)", "sequence-type": "depositor-full", "addgene_id": "17453", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17453.depositor-full.gb" }, @@ -120157,7 +151469,10 @@ "plasmid_name": "p5E-4xnrUAS", "sequence-type": "addgene-full", "addgene_id": "87120", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/87120.addgene-full.gb" }, @@ -120166,7 +151481,10 @@ "plasmid_name": "4xnrUAS:MLS-KillerRed in pTol2pA2-acrys-EGFP-", "sequence-type": "addgene-full", "addgene_id": "115516", - "references": [], + "references": [ + "https://doi.org/10.1016/j.redox.2018.08.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30193184" + ], "kit": null, "file": "data/addgene_plasmids/115516.addgene-full.gb" }, @@ -120175,7 +151493,6 @@ "plasmid_name": "pCM3.12", "sequence-type": "depositor-full", "addgene_id": "19606", - "references": [], "kit": null, "file": "data/addgene_plasmids/19606.depositor-full.gb" }, @@ -120184,7 +151501,10 @@ "plasmid_name": "pYPQ166-iSpyMac", "sequence-type": "addgene-full", "addgene_id": "149553", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xplc.2020.100101", + "https://www.ncbi.nlm.nih.gov/pubmed/33898973" + ], "kit": null, "file": "data/addgene_plasmids/149553.addgene-full.gb" }, @@ -120193,7 +151513,6 @@ "plasmid_name": "pDTA-5", "sequence-type": "addgene-full", "addgene_id": "128845", - "references": [], "kit": null, "file": "data/addgene_plasmids/128845.addgene-full.gb" }, @@ -120202,7 +151521,10 @@ "plasmid_name": "pAG423GPD-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14342", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -120214,7 +151536,10 @@ "plasmid_name": "pHAGE-BRAF-L537S", "sequence-type": "addgene-full", "addgene_id": "116175", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116175.addgene-full.gb" }, @@ -120223,7 +151548,10 @@ "plasmid_name": "p{Mhc-F4-678-EGFP::GW,attB}", "sequence-type": "addgene-full", "addgene_id": "182170", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182170.addgene-full.gb" }, @@ -120232,7 +151560,10 @@ "plasmid_name": "p7056 pHAGE-P-CMVt-N-HA-GAW-CPT1A", "sequence-type": "addgene-full", "addgene_id": "100146", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100146.addgene-full.gb" }, @@ -120241,7 +151572,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF7a", "sequence-type": "depositor-full", "addgene_id": "168882", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168882.depositor-full.gb" }, @@ -120250,7 +151584,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK20_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189883", - "references": [], "kit": null, "file": "data/addgene_plasmids/189883.addgene-full.gb" }, @@ -120259,7 +151592,10 @@ "plasmid_name": "pYPQ287 (BsCas12a)", "sequence-type": "addgene-full", "addgene_id": "138123", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138123.addgene-full.gb" }, @@ -120268,7 +151604,10 @@ "plasmid_name": "pDONR223_DCAF4L2_p.G100V", "sequence-type": "addgene-full", "addgene_id": "81421", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -120280,7 +151619,10 @@ "plasmid_name": "KB701: pMAGIC (L5-L4) hU6::SaCas9 gRNA scaffold; CMV promoter", "sequence-type": "addgene-full", "addgene_id": "121818", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121818.addgene-full.gb" }, @@ -120289,7 +151631,10 @@ "plasmid_name": "pLentiRhoA2G", "sequence-type": "depositor-full", "addgene_id": "40179", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.2004135", + "https://www.ncbi.nlm.nih.gov/pubmed/23882122" + ], "kit": null, "file": "data/addgene_plasmids/40179.depositor-full.gb" }, @@ -120298,7 +151643,9 @@ "plasmid_name": "pDONR221-CALM3(1of4)", "sequence-type": "addgene-full", "addgene_id": "166156", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166156.addgene-full.gb" }, @@ -120307,7 +151654,10 @@ "plasmid_name": "pDEST-actc1b-ccdb-mKate2", "sequence-type": "addgene-full", "addgene_id": "109731", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109731.addgene-full.gb" }, @@ -120316,7 +151666,10 @@ "plasmid_name": "TFORF3139", "sequence-type": "addgene-full", "addgene_id": "144615", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144615.addgene-full.gb" }, @@ -120325,7 +151678,6 @@ "plasmid_name": "p663-UBC-V5-BioID-STOP_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158163", - "references": [], "kit": null, "file": "data/addgene_plasmids/158163.addgene-full.gb" }, @@ -120334,7 +151686,10 @@ "plasmid_name": "pLX304_zeo_mmFbxw7(res)", "sequence-type": "addgene-full", "addgene_id": "160106", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160106.addgene-full.gb" }, @@ -120343,7 +151698,10 @@ "plasmid_name": "IO401: pMVP (R4-R3) eYFP open", "sequence-type": "addgene-full", "addgene_id": "121737", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121737.addgene-full.gb" }, @@ -120352,7 +151710,6 @@ "plasmid_name": "pGEX6P1-DEST-Myc", "sequence-type": "addgene-full", "addgene_id": "119752", - "references": [], "kit": null, "file": "data/addgene_plasmids/119752.addgene-full.gb" }, @@ -120361,7 +151718,10 @@ "plasmid_name": "pDONR223_DCAF8_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82947", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82947.addgene-full.gb" }, @@ -120370,7 +151730,10 @@ "plasmid_name": "pAG426GPD-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14276", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -120382,7 +151745,10 @@ "plasmid_name": "pMuLE ENTR CMV L3-L2", "sequence-type": "depositor-full", "addgene_id": "62092", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62092.depositor-full.gb" }, @@ -120391,7 +151757,10 @@ "plasmid_name": "lenti-ATAD2-plx303", "sequence-type": "addgene-full", "addgene_id": "188635", - "references": [], + "references": [ + "https://doi.org/10.1126/science.abc1048", + "https://www.ncbi.nlm.nih.gov/pubmed/34516843" + ], "kit": null, "file": "data/addgene_plasmids/188635.addgene-full.gb" }, @@ -120400,7 +151769,9 @@ "plasmid_name": "pMpGWB220", "sequence-type": "depositor-full", "addgene_id": "68611", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68611.depositor-full.gb" }, @@ -120409,7 +151780,10 @@ "plasmid_name": "pCAG-All-in-one-hCascade", "sequence-type": "addgene-full", "addgene_id": "134919", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-13226-x", + "https://www.ncbi.nlm.nih.gov/pubmed/31811138" + ], "kit": null, "file": "data/addgene_plasmids/134919.addgene-full.gb" }, @@ -120418,7 +151792,10 @@ "plasmid_name": "SUN2delCC", "sequence-type": "addgene-full", "addgene_id": "130836", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.221390", + "https://www.ncbi.nlm.nih.gov/pubmed/30659121" + ], "kit": null, "file": "data/addgene_plasmids/130836.addgene-full.gb" }, @@ -120427,7 +151804,10 @@ "plasmid_name": "pDONR223_HAVCR2_WT", "sequence-type": "addgene-full", "addgene_id": "82893", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82893.addgene-full.gb" }, @@ -120436,7 +151816,10 @@ "plasmid_name": "R619-M68-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-529)-3C-His8-SBP", "sequence-type": "addgene-full", "addgene_id": "166019", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/166019.addgene-full.gb" }, @@ -120445,7 +151828,10 @@ "plasmid_name": "pSLIK 3xFLAG-XRCC6 zeo", "sequence-type": "addgene-full", "addgene_id": "192327", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192327.addgene-full.gb" }, @@ -120454,7 +151840,10 @@ "plasmid_name": "pEX-CMV-SP-YFP-STM2(15-746) EF hand D80A", "sequence-type": "depositor-full", "addgene_id": "18864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2007.11.039", + "https://www.ncbi.nlm.nih.gov/pubmed/18160041" + ], "kit": null, "file": "data/addgene_plasmids/18864.depositor-full.gb" }, @@ -120463,7 +151852,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP6", "sequence-type": "addgene-full", "addgene_id": "158357", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158357.addgene-full.gb" }, @@ -120472,7 +151864,10 @@ "plasmid_name": "GFP-hAgo2", "sequence-type": "addgene-full", "addgene_id": "11590", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb1334", + "https://www.ncbi.nlm.nih.gov/pubmed/16284622" + ], "kit": null, "file": "data/addgene_plasmids/11590.addgene-full.gb" }, @@ -120481,7 +151876,10 @@ "plasmid_name": "pENTR-flbio", "sequence-type": "depositor-full", "addgene_id": "30216", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1016959108", + "https://www.ncbi.nlm.nih.gov/pubmed/21415370" + ], "kit": null, "file": "data/addgene_plasmids/30216.depositor-full.gb" }, @@ -120490,7 +151888,10 @@ "plasmid_name": "pFPL-Gg", "sequence-type": "addgene-full", "addgene_id": "61653", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-05-14-0144-TA", + "https://www.ncbi.nlm.nih.gov/pubmed/25390188" + ], "kit": null, "file": "data/addgene_plasmids/61653.addgene-full.gb" }, @@ -120499,7 +151900,10 @@ "plasmid_name": "pDONR221-SLC35A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161230", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161230.addgene-full.gb" }, @@ -120508,7 +151912,10 @@ "plasmid_name": "pDONR223_SMAD2_p.D304G", "sequence-type": "addgene-full", "addgene_id": "81615", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -120520,7 +151927,10 @@ "plasmid_name": "pENTR D-TOPO-C3_6", "sequence-type": "depositor-full", "addgene_id": "60255", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60255.depositor-full.gb" }, @@ -120529,7 +151939,10 @@ "plasmid_name": "actc1b-mKate2-2xFYVEhgs", "sequence-type": "addgene-full", "addgene_id": "109505", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109505.addgene-full.gb" }, @@ -120538,7 +151951,10 @@ "plasmid_name": "DHX40", "sequence-type": "addgene-full", "addgene_id": "155540", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155540.addgene-full.gb" }, @@ -120547,7 +151963,9 @@ "plasmid_name": "tre-stblHIF: pLenti-TRE-stblHIF-PGK-rtTAA-2A-Puro", "sequence-type": "addgene-full", "addgene_id": "177203", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.05.17.492374" + ], "kit": null, "file": "data/addgene_plasmids/177203.addgene-full.gb" }, @@ -120556,7 +151974,10 @@ "plasmid_name": "TFORF3399", "sequence-type": "addgene-full", "addgene_id": "144875", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144875.addgene-full.gb" }, @@ -120565,7 +151986,10 @@ "plasmid_name": "pHAGE-ERBB2-L841V", "sequence-type": "addgene-full", "addgene_id": "116341", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116341.addgene-full.gb" }, @@ -120574,7 +151998,10 @@ "plasmid_name": "pcDNA3_SP-GCGR-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194377", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194377.addgene-full.gb" }, @@ -120583,7 +152010,10 @@ "plasmid_name": "pDONR221_SLC16A1", "sequence-type": "addgene-full", "addgene_id": "131934", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131934.addgene-full.gb" }, @@ -120592,7 +152022,10 @@ "plasmid_name": "pAG413GPD-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14238", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -120604,7 +152037,10 @@ "plasmid_name": "pBabe-Puro-REDD1-HA", "sequence-type": "addgene-full", "addgene_id": "133550", - "references": [], + "references": [ + "https://doi.org/10.1021/bi902135e", + "https://www.ncbi.nlm.nih.gov/pubmed/20166753" + ], "kit": null, "file": "data/addgene_plasmids/133550.addgene-full.gb" }, @@ -120613,7 +152049,6 @@ "plasmid_name": "SYNJ1_BirA_Cterm", "sequence-type": "addgene-full", "addgene_id": "221522", - "references": [], "kit": null, "file": "data/addgene_plasmids/221522.addgene-full.gb" }, @@ -120622,7 +152057,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep57", "sequence-type": "addgene-full", "addgene_id": "136866", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136866.addgene-full.gb" }, @@ -120631,7 +152069,10 @@ "plasmid_name": "pDONR223_KRAS_p.G13D", "sequence-type": "addgene-full", "addgene_id": "82808", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82808.addgene-full.gb" }, @@ -120640,7 +152081,10 @@ "plasmid_name": "pEntry_HCoV-229E-Membrane", "sequence-type": "depositor-full", "addgene_id": "168966", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168966.depositor-full.gb" }, @@ -120649,7 +152093,10 @@ "plasmid_name": "pHAGE-BRAF-G464V", "sequence-type": "addgene-full", "addgene_id": "116148", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116148.addgene-full.gb" }, @@ -120658,7 +152105,10 @@ "plasmid_name": "908H", "sequence-type": "addgene-full", "addgene_id": "160240", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160240.addgene-full.gb" }, @@ -120667,7 +152117,10 @@ "plasmid_name": "pTone-gata2aECE-EGFP", "sequence-type": "addgene-full", "addgene_id": "132974", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2019.08.019", + "https://www.ncbi.nlm.nih.gov/pubmed/31564611" + ], "kit": null, "file": "data/addgene_plasmids/132974.addgene-full.gb" }, @@ -120676,7 +152129,10 @@ "plasmid_name": "pDONR221-SLC16A5_STOP", "sequence-type": "depositor-full", "addgene_id": "161089", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161089.depositor-full.gb" }, @@ -120685,7 +152141,10 @@ "plasmid_name": "pWPI-E2F3", "sequence-type": "addgene-full", "addgene_id": "114298", - "references": [], + "references": [ + "https://doi.org/10.4161/cc.25834", + "https://www.ncbi.nlm.nih.gov/pubmed/23907129" + ], "kit": null, "file": "data/addgene_plasmids/114298.addgene-full.gb" }, @@ -120694,7 +152153,9 @@ "plasmid_name": "pPB-cT3G-cERP2-MEIOC", "sequence-type": "addgene-full", "addgene_id": "222562", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222562.addgene-full.gb" }, @@ -120703,7 +152164,10 @@ "plasmid_name": "pDONR223_SPAG8_WT", "sequence-type": "addgene-full", "addgene_id": "81848", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -120715,7 +152179,10 @@ "plasmid_name": "IF405: pMAGIC (R4-R3) NLS-Sa dCas9-NLS-p300core", "sequence-type": "addgene-full", "addgene_id": "121825", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121825.addgene-full.gb" }, @@ -120724,7 +152191,10 @@ "plasmid_name": "pDONR221-SLC12A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161039", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161039.addgene-full.gb" }, @@ -120733,7 +152203,9 @@ "plasmid_name": "p2K7bsdUBI-mCherry-STIM1", "sequence-type": "addgene-full", "addgene_id": "114178", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29176619" + ], "kit": null, "file": "data/addgene_plasmids/114178.addgene-full.gb" }, @@ -120742,7 +152214,10 @@ "plasmid_name": "KZ701: pMVP (L3-L2) AID + polyA", "sequence-type": "addgene-full", "addgene_id": "121791", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121791.addgene-full.gb" }, @@ -120751,7 +152226,10 @@ "plasmid_name": "pME map2k2a_s219D", "sequence-type": "addgene-full", "addgene_id": "201058", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201820", + "https://www.ncbi.nlm.nih.gov/pubmed/37708300" + ], "kit": null, "file": "data/addgene_plasmids/201058.addgene-full.gb" }, @@ -120760,7 +152238,10 @@ "plasmid_name": "TFORF3152", "sequence-type": "addgene-full", "addgene_id": "144628", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144628.addgene-full.gb" }, @@ -120769,7 +152250,6 @@ "plasmid_name": "Hs.KRAS4b K117N", "sequence-type": "depositor-full", "addgene_id": "83146", - "references": [], "kit": null, "file": "data/addgene_plasmids/83146.depositor-full.gb" }, @@ -120778,7 +152258,10 @@ "plasmid_name": "pAD/CMV/V5-DEST-Cdc42-2G", "sequence-type": "depositor-full", "addgene_id": "68812", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21901", + "https://www.ncbi.nlm.nih.gov/pubmed/26912264" + ], "kit": null, "file": "data/addgene_plasmids/68812.depositor-full.gb" }, @@ -120787,7 +152270,10 @@ "plasmid_name": "pDONR221-HOXC5", "sequence-type": "addgene-full", "addgene_id": "101399", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101399.addgene-full.gb" }, @@ -120796,7 +152282,10 @@ "plasmid_name": "pGW-RL-PA", "sequence-type": "depositor-full", "addgene_id": "78856", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jmb.2015.08.003", + "https://www.ncbi.nlm.nih.gov/pubmed/26264872" + ], "kit": null, "file": "data/addgene_plasmids/78856.depositor-full.gb" }, @@ -120805,7 +152294,10 @@ "plasmid_name": "pHAGE-EGFR-A763_Y764insFQEA", "sequence-type": "addgene-full", "addgene_id": "116233", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116233.addgene-full.gb" }, @@ -120814,7 +152306,10 @@ "plasmid_name": "pLVX-UBE3B-BirA-Puro", "sequence-type": "addgene-full", "addgene_id": "107352", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M116.766824", + "https://www.ncbi.nlm.nih.gov/pubmed/28003368" + ], "kit": null, "file": "data/addgene_plasmids/107352.addgene-full.gb" }, @@ -120823,7 +152318,10 @@ "plasmid_name": "TFORF3431", "sequence-type": "addgene-full", "addgene_id": "144907", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144907.addgene-full.gb" }, @@ -120832,7 +152330,10 @@ "plasmid_name": "pAG414GPD-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14408", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -120844,7 +152345,10 @@ "plasmid_name": "pMetOYC-Dest", "sequence-type": "addgene-full", "addgene_id": "105082", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.00470", + "https://www.ncbi.nlm.nih.gov/pubmed/27208310" + ], "kit": null, "file": "data/addgene_plasmids/105082.addgene-full.gb" }, @@ -120853,7 +152357,10 @@ "plasmid_name": "pDONR223_KIF2B_p.I119T", "sequence-type": "addgene-full", "addgene_id": "81487", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -120865,7 +152372,10 @@ "plasmid_name": "pDONR223_CCNG1_WT", "sequence-type": "addgene-full", "addgene_id": "81767", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -120889,7 +152399,6 @@ "plasmid_name": "pEF 3-CFP-2", "sequence-type": "depositor-full", "addgene_id": "20105", - "references": [], "kit": null, "file": "data/addgene_plasmids/20105.depositor-full.gb" }, @@ -120898,7 +152407,10 @@ "plasmid_name": "pDONR221-SLCO1A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161342", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161342.addgene-full.gb" }, @@ -120907,7 +152419,10 @@ "plasmid_name": "pcDNA5FRT/TO-Strep/HA-UBE2Q2", "sequence-type": "addgene-full", "addgene_id": "124668", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "file": "data/addgene_plasmids/124668.addgene-full.gb" }, @@ -120916,7 +152431,9 @@ "plasmid_name": "p3E-IRES-H2A-mCherry-SV40-pA (JDW 1256)", "sequence-type": "addgene-full", "addgene_id": "224532", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224532.addgene-full.gb" }, @@ -120925,7 +152442,10 @@ "plasmid_name": "pSLIK_hygro_p53(R280K)_V5", "sequence-type": "addgene-full", "addgene_id": "136540", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136540.addgene-full.gb" }, @@ -120934,7 +152454,9 @@ "plasmid_name": "pDONR221-SLC25A22", "sequence-type": "addgene-full", "addgene_id": "166210", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166210.addgene-full.gb" }, @@ -120943,7 +152465,6 @@ "plasmid_name": "R777-E137 Hs.MTOR", "sequence-type": "depositor-full", "addgene_id": "70421", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -120955,7 +152476,10 @@ "plasmid_name": "pPV-EF1a-2xNLS-Cas7-Cas5-Cse1-iPA", "sequence-type": "addgene-full", "addgene_id": "134924", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-13226-x", + "https://www.ncbi.nlm.nih.gov/pubmed/31811138" + ], "kit": null, "file": "data/addgene_plasmids/134924.addgene-full.gb" }, @@ -120964,7 +152488,10 @@ "plasmid_name": "pAG424GPD-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14392", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -120976,7 +152503,10 @@ "plasmid_name": "pMH-SFB", "sequence-type": "addgene-full", "addgene_id": "99391", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "file": "data/addgene_plasmids/99391.addgene-full.gb" }, @@ -120985,7 +152515,10 @@ "plasmid_name": "pMuLE Lenti Dest iRFP", "sequence-type": "depositor-full", "addgene_id": "62176", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62176.depositor-full.gb" }, @@ -120994,7 +152527,10 @@ "plasmid_name": "TFORF3077", "sequence-type": "addgene-full", "addgene_id": "144553", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144553.addgene-full.gb" }, @@ -121003,7 +152539,10 @@ "plasmid_name": "pDONR221-SLC20A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161176", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161176.addgene-full.gb" }, @@ -121012,7 +152551,10 @@ "plasmid_name": "TFORF3291", "sequence-type": "addgene-full", "addgene_id": "144767", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144767.addgene-full.gb" }, @@ -121021,7 +152563,10 @@ "plasmid_name": "actc1b-mKate2-rab42b", "sequence-type": "addgene-full", "addgene_id": "109643", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109643.addgene-full.gb" }, @@ -121030,7 +152575,10 @@ "plasmid_name": "pENTR1A-PIK3CA E545K", "sequence-type": "addgene-full", "addgene_id": "180032", - "references": [], + "references": [ + "https://doi.org/10.1111/liv.13055", + "https://www.ncbi.nlm.nih.gov/pubmed/26716908" + ], "kit": null, "file": "data/addgene_plasmids/180032.addgene-full.gb" }, @@ -121039,7 +152587,10 @@ "plasmid_name": "pDONR221_SLC25A25", "sequence-type": "addgene-full", "addgene_id": "131992", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131992.addgene-full.gb" }, @@ -121048,7 +152599,10 @@ "plasmid_name": "pLVX-CMV-Flag-PolB(K206A/K244A/T304I)-Puro", "sequence-type": "addgene-full", "addgene_id": "177145", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkz293", + "https://www.ncbi.nlm.nih.gov/pubmed/31287140" + ], "kit": null, "file": "data/addgene_plasmids/177145.addgene-full.gb" }, @@ -121057,7 +152611,10 @@ "plasmid_name": "Active Wnt16-V5", "sequence-type": "depositor-full", "addgene_id": "43825", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43825.depositor-full.gb" }, @@ -121066,7 +152623,10 @@ "plasmid_name": "pKM596", "sequence-type": "depositor-full", "addgene_id": "8837", - "references": [], + "references": [ + "https://doi.org/10.1016/S0014-5793%2803%2900070-X", + "https://www.ncbi.nlm.nih.gov/pubmed/12606030" + ], "kit": null, "file": "data/addgene_plasmids/8837.depositor-full.gb" }, @@ -121075,7 +152635,10 @@ "plasmid_name": "pBZ-attBtxnl4b", "sequence-type": "depositor-full", "addgene_id": "18667", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18667.depositor-full.gb" }, @@ -121084,7 +152647,10 @@ "plasmid_name": "TFORF3011", "sequence-type": "addgene-full", "addgene_id": "144487", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144487.addgene-full.gb" }, @@ -121093,7 +152659,10 @@ "plasmid_name": "pENTR E2 HSPter-RPS5Ap-mito", "sequence-type": "addgene-full", "addgene_id": "163146", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.15041", + "https://www.ncbi.nlm.nih.gov/pubmed/33098708" + ], "kit": null, "file": "data/addgene_plasmids/163146.addgene-full.gb" }, @@ -121102,7 +152671,10 @@ "plasmid_name": "PB-CAG-4300-L1-G1397N", "sequence-type": "addgene-full", "addgene_id": "210396", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-023-05500-y", + "https://www.ncbi.nlm.nih.gov/pubmed/37923818" + ], "kit": null, "file": "data/addgene_plasmids/210396.addgene-full.gb" }, @@ -121111,7 +152683,10 @@ "plasmid_name": "pDONR221-SLC38A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161296", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161296.addgene-full.gb" }, @@ -121120,7 +152695,9 @@ "plasmid_name": "NCMV MmuPV1 E6 R52A", "sequence-type": "addgene-full", "addgene_id": "87678", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28107544" + ], "kit": null, "file": "data/addgene_plasmids/87678.addgene-full.gb" }, @@ -121129,7 +152706,10 @@ "plasmid_name": "pDONR223_PIK3CG_p.K973R", "sequence-type": "addgene-full", "addgene_id": "81628", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -121141,7 +152721,10 @@ "plasmid_name": "JUP_pLX307", "sequence-type": "addgene-full", "addgene_id": "98347", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98347.addgene-full.gb" }, @@ -121150,7 +152733,10 @@ "plasmid_name": "pENTR-D-kcnj1a.1", "sequence-type": "addgene-full", "addgene_id": "173125", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173125.addgene-full.gb" }, @@ -121159,7 +152745,6 @@ "plasmid_name": "pDEST-Spe4-Kozak-mNeonGreen-RfA", "sequence-type": "addgene-full", "addgene_id": "186382", - "references": [], "kit": null, "file": "data/addgene_plasmids/186382.addgene-full.gb" }, @@ -121168,7 +152753,10 @@ "plasmid_name": "actc1b-mKate2-ARF6-DN", "sequence-type": "addgene-full", "addgene_id": "109538", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109538.addgene-full.gb" }, @@ -121177,7 +152765,10 @@ "plasmid_name": "pdRBFC-NS1-YN", "sequence-type": "depositor-full", "addgene_id": "74723", - "references": [], + "references": [ + "https://doi.org/10.1016/j.virol.2015.08.023", + "https://www.ncbi.nlm.nih.gov/pubmed/26351203" + ], "kit": null, "file": "data/addgene_plasmids/74723.depositor-full.gb" }, @@ -121186,7 +152777,10 @@ "plasmid_name": "pDONR221_SLC13A1", "sequence-type": "addgene-full", "addgene_id": "131909", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131909.addgene-full.gb" }, @@ -121195,7 +152789,10 @@ "plasmid_name": "TFORF3372", "sequence-type": "addgene-full", "addgene_id": "144848", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144848.addgene-full.gb" }, @@ -121204,7 +152801,10 @@ "plasmid_name": "pDONR223_KEAP1_p.G333C", "sequence-type": "addgene-full", "addgene_id": "82835", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82835.addgene-full.gb" }, @@ -121213,7 +152813,10 @@ "plasmid_name": "pCK082 desmaMCS:minprommCherry,exorh:mCerulean", "sequence-type": "addgene-full", "addgene_id": "200015", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/200015.addgene-full.gb" }, @@ -121222,7 +152825,10 @@ "plasmid_name": "pDONR223_KEAP1_p.R470S", "sequence-type": "addgene-full", "addgene_id": "82781", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82781.addgene-full.gb" }, @@ -121231,7 +152837,6 @@ "plasmid_name": "IDG_KCNS2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161654", - "references": [], "kit": null, "file": "data/addgene_plasmids/161654.addgene-full.gb" }, @@ -121240,7 +152845,10 @@ "plasmid_name": "pDONR223_WISP2_p.R230L", "sequence-type": "addgene-full", "addgene_id": "81271", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -121252,7 +152860,10 @@ "plasmid_name": "pTol2CG2-QUASM1:mScarletNLS-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155124", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155124.addgene-full.gb" }, @@ -121261,7 +152872,10 @@ "plasmid_name": "pTW095", "sequence-type": "addgene-full", "addgene_id": "115938", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115938.addgene-full.gb" }, @@ -121270,7 +152884,6 @@ "plasmid_name": "pLEX307-ACE2-puro", "sequence-type": "addgene-full", "addgene_id": "158448", - "references": [], "kit": null, "file": "data/addgene_plasmids/158448.addgene-full.gb" }, @@ -121279,7 +152892,6 @@ "plasmid_name": "pEF 1-PLI-4", "sequence-type": "depositor-full", "addgene_id": "20087", - "references": [], "kit": null, "file": "data/addgene_plasmids/20087.depositor-full.gb" }, @@ -121288,7 +152900,10 @@ "plasmid_name": "pHAGE-CDK6", "sequence-type": "addgene-full", "addgene_id": "116725", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116725.addgene-full.gb" }, @@ -121297,7 +152912,9 @@ "plasmid_name": "pMpGWB412", "sequence-type": "depositor-full", "addgene_id": "68677", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68677.depositor-full.gb" }, @@ -121306,7 +152923,10 @@ "plasmid_name": "MSCV-N LMP2A", "sequence-type": "addgene-full", "addgene_id": "37963", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11288", + "https://www.ncbi.nlm.nih.gov/pubmed/22810586" + ], "kit": null, "file": "data/addgene_plasmids/37963.addgene-full.gb" }, @@ -121315,7 +152935,10 @@ "plasmid_name": "pAG305GPD-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14210", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -121327,7 +152950,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK3_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198006", - "references": [], "kit": null, "file": "data/addgene_plasmids/198006.addgene-full.gb" }, @@ -121336,7 +152958,10 @@ "plasmid_name": "MAC_C_TGON2", "sequence-type": "addgene-full", "addgene_id": "111677", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111677.addgene-full.gb" }, @@ -121345,7 +152970,10 @@ "plasmid_name": "pLARRY-EGFP", "sequence-type": "addgene-full", "addgene_id": "140025", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aaw3381", + "https://www.ncbi.nlm.nih.gov/pubmed/31974159" + ], "kit": null, "file": "data/addgene_plasmids/140025.addgene-full.gb" }, @@ -121354,7 +152982,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-R4R3", "sequence-type": "depositor-full", "addgene_id": "113739", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -121366,7 +152997,6 @@ "plasmid_name": "pENTR CMVie-Lifeact-mTagBFP2 L1-R5", "sequence-type": "addgene-full", "addgene_id": "84388", - "references": [], "kit": null, "file": "data/addgene_plasmids/84388.addgene-full.gb" }, @@ -121375,7 +153005,10 @@ "plasmid_name": "pMT mir-1-1 reporter cel-mir-50", "sequence-type": "depositor-full", "addgene_id": "46740", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46740.depositor-full.gb" }, @@ -121384,7 +153017,6 @@ "plasmid_name": "p42Hyg 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58551", - "references": [], "kit": null, "file": "data/addgene_plasmids/58551.depositor-full.gb" }, @@ -121393,7 +153025,10 @@ "plasmid_name": "pCPP5058", "sequence-type": "addgene-full", "addgene_id": "128710", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.04.037", + "https://www.ncbi.nlm.nih.gov/pubmed/29742421" + ], "kit": null, "file": "data/addgene_plasmids/128710.addgene-full.gb" }, @@ -121402,7 +153037,10 @@ "plasmid_name": "pDONR221_SLC22A31", "sequence-type": "addgene-full", "addgene_id": "132036", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132036.addgene-full.gb" }, @@ -121411,7 +153049,6 @@ "plasmid_name": "pDONR221-olig2", "sequence-type": "addgene-full", "addgene_id": "192743", - "references": [], "kit": null, "file": "data/addgene_plasmids/192743.addgene-full.gb" }, @@ -121420,7 +153057,10 @@ "plasmid_name": "pDONR221 Ub-NLRP1 L1218", "sequence-type": "addgene-full", "addgene_id": "166829", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166829.addgene-full.gb" }, @@ -121429,7 +153069,10 @@ "plasmid_name": "pDONR221 SARS-CoV-2 S-frag2_nostop", "sequence-type": "addgene-full", "addgene_id": "153174", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153174.addgene-full.gb" }, @@ -121438,7 +153081,10 @@ "plasmid_name": "pDONR223 GABARAPL1 WT", "sequence-type": "addgene-full", "addgene_id": "123083", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123083.addgene-full.gb" }, @@ -121447,7 +153093,10 @@ "plasmid_name": "PB-TRE3G-MYCN", "sequence-type": "addgene-full", "addgene_id": "104542", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2017.12.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29320761" + ], "kit": null, "file": "data/addgene_plasmids/104542.addgene-full.gb" }, @@ -121456,7 +153105,10 @@ "plasmid_name": "pPB-cT3G-cERP2-HOPX", "sequence-type": "addgene-full", "addgene_id": "192923", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192923.addgene-full.gb" }, @@ -121465,7 +153117,6 @@ "plasmid_name": "pDEST17-DDX53", "sequence-type": "addgene-full", "addgene_id": "222240", - "references": [], "kit": null, "file": "data/addgene_plasmids/222240.addgene-full.gb" }, @@ -121474,7 +153125,10 @@ "plasmid_name": "C232-E29: attB2r-mClover3-attB3", "sequence-type": "addgene-full", "addgene_id": "162906", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -121486,7 +153140,10 @@ "plasmid_name": "pDONR223_CDK4_WT", "sequence-type": "addgene-full", "addgene_id": "82297", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82297.addgene-full.gb" }, @@ -121495,7 +153152,10 @@ "plasmid_name": "pAG413GPD-ccdB", "sequence-type": "addgene-full", "addgene_id": "14142", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -121507,7 +153167,10 @@ "plasmid_name": "Hygro-iDEST", "sequence-type": "depositor-full", "addgene_id": "75339", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2016.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/27133796" + ], "kit": null, "file": "data/addgene_plasmids/75339.depositor-full.gb" }, @@ -121516,7 +153179,10 @@ "plasmid_name": "Flag-HA-USP37", "sequence-type": "addgene-full", "addgene_id": "22602", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22602.addgene-full.gb" }, @@ -121525,7 +153191,9 @@ "plasmid_name": "pMpGWB311", "sequence-type": "depositor-full", "addgene_id": "68639", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68639.depositor-full.gb" }, @@ -121534,7 +153202,10 @@ "plasmid_name": "pDONR223_MAP2K1_p.S218D_S222D", "sequence-type": "addgene-full", "addgene_id": "82177", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82177.addgene-full.gb" }, @@ -121543,7 +153214,10 @@ "plasmid_name": "pSCR-GW", "sequence-type": "addgene-full", "addgene_id": "209374", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209374.addgene-full.gb" }, @@ -121552,7 +153226,10 @@ "plasmid_name": "pMuLE_ENTR_CBF-tdTomato_L3-L2", "sequence-type": "addgene-full", "addgene_id": "113708", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0226570", + "https://www.ncbi.nlm.nih.gov/pubmed/31860685" + ], "kit": null, "file": "data/addgene_plasmids/113708.addgene-full.gb" }, @@ -121561,7 +153238,10 @@ "plasmid_name": "pDONR221_SLC43A3", "sequence-type": "addgene-full", "addgene_id": "132202", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132202.addgene-full.gb" }, @@ -121570,7 +153250,10 @@ "plasmid_name": "plIVMD164", "sequence-type": "addgene-full", "addgene_id": "160936", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2002650117", + "https://www.ncbi.nlm.nih.gov/pubmed/33037152" + ], "kit": null, "file": "data/addgene_plasmids/160936.addgene-full.gb" }, @@ -121579,7 +153262,10 @@ "plasmid_name": "pRATIO4212", "sequence-type": "addgene-full", "addgene_id": "141313", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141313.addgene-full.gb" }, @@ -121588,7 +153274,10 @@ "plasmid_name": "pDONR221_SLC25A1", "sequence-type": "addgene-full", "addgene_id": "132299", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132299.addgene-full.gb" }, @@ -121597,7 +153286,10 @@ "plasmid_name": "pHAGE-PIK3CA-M1043L", "sequence-type": "addgene-full", "addgene_id": "116511", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116511.addgene-full.gb" }, @@ -121606,7 +153298,10 @@ "plasmid_name": "pCFJ2262A - [1-2] ENTR - Fluor - ce-mNeon (1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159851", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159851.addgene-full.gb" }, @@ -121615,7 +153310,10 @@ "plasmid_name": "MAC_C_NTRK3", "sequence-type": "addgene-full", "addgene_id": "187796", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187796.addgene-full.gb" }, @@ -121624,7 +153322,10 @@ "plasmid_name": "pMEcldn5bP1gfp", "sequence-type": "addgene-full", "addgene_id": "90124", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90124.addgene-full.gb" }, @@ -121633,7 +153334,10 @@ "plasmid_name": "pLenti PGK OGT (Neo)", "sequence-type": "addgene-full", "addgene_id": "154289", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2016778118", + "https://www.ncbi.nlm.nih.gov/pubmed/33419956" + ], "kit": null, "file": "data/addgene_plasmids/154289.addgene-full.gb" }, @@ -121643,8 +153347,8 @@ "sequence-type": "addgene-full", "addgene_id": "22579", "references": [ - "https://doi.org/10.1038/nature09320", - "https://www.ncbi.nlm.nih.gov/pubmed/20740007" + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" ], "kit": null, "file": "data/addgene_plasmids/22579.addgene-full.gb" @@ -121654,7 +153358,10 @@ "plasmid_name": "pDONR221-LETMD1_STOP", "sequence-type": "addgene-full", "addgene_id": "161460", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161460.addgene-full.gb" }, @@ -121663,7 +153370,10 @@ "plasmid_name": "pDONR207-SD3(1-50)", "sequence-type": "depositor-full", "addgene_id": "44587", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "file": "data/addgene_plasmids/44587.depositor-full.gb" }, @@ -121672,7 +153382,10 @@ "plasmid_name": "pDONR221_SLC45A4", "sequence-type": "addgene-full", "addgene_id": "132179", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132179.addgene-full.gb" }, @@ -121681,7 +153394,6 @@ "plasmid_name": "His8:MBP-tev-Phe-e\u0394K-Flv", "sequence-type": "addgene-full", "addgene_id": "83395", - "references": [], "kit": null, "file": "data/addgene_plasmids/83395.addgene-full.gb" }, @@ -121690,7 +153402,9 @@ "plasmid_name": "Shim_GlyRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202648", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "file": "data/addgene_plasmids/202648.addgene-full.gb" }, @@ -121699,7 +153413,10 @@ "plasmid_name": "MCAM-BirA*-HA", "sequence-type": "addgene-full", "addgene_id": "214472", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E23-06-0255", + "https://www.ncbi.nlm.nih.gov/pubmed/38117590" + ], "kit": null, "file": "data/addgene_plasmids/214472.addgene-full.gb" }, @@ -121708,7 +153425,6 @@ "plasmid_name": "IDG_KCNH6_OE_1", "sequence-type": "addgene-full", "addgene_id": "161669", - "references": [], "kit": null, "file": "data/addgene_plasmids/161669.addgene-full.gb" }, @@ -121717,7 +153433,10 @@ "plasmid_name": "pDONR223 GABARAPL2 no-stop", "sequence-type": "addgene-full", "addgene_id": "123211", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123211.addgene-full.gb" }, @@ -121726,7 +153445,6 @@ "plasmid_name": "pENTR-R2L3-cHA-IRESpuro-pA", "sequence-type": "addgene-full", "addgene_id": "139537", - "references": [], "kit": null, "file": "data/addgene_plasmids/139537.addgene-full.gb" }, @@ -121735,7 +153453,10 @@ "plasmid_name": "pTol2CG2-ubi:QFGal4-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155119", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155119.addgene-full.gb" }, @@ -121744,7 +153465,10 @@ "plasmid_name": "pJH55_pE12_hyCal9", "sequence-type": "addgene-full", "addgene_id": "160410", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160410.addgene-full.gb" }, @@ -121753,7 +153477,6 @@ "plasmid_name": "R777-E163 Hs.PIK3CA", "sequence-type": "depositor-full", "addgene_id": "70447", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -121765,7 +153488,10 @@ "plasmid_name": "pHAGE-BMPR2", "sequence-type": "addgene-full", "addgene_id": "116718", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116718.addgene-full.gb" }, @@ -121774,7 +153500,10 @@ "plasmid_name": "pMuLE ENTR 7SK L1-L4", "sequence-type": "depositor-full", "addgene_id": "62110", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62110.depositor-full.gb" }, @@ -121783,7 +153512,10 @@ "plasmid_name": "pAcBac1-Ma-sfGFP WT", "sequence-type": "addgene-full", "addgene_id": "197567", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.2c00639", + "https://www.ncbi.nlm.nih.gov/pubmed/36383641" + ], "kit": null, "file": "data/addgene_plasmids/197567.addgene-full.gb" }, @@ -121792,7 +153524,6 @@ "plasmid_name": "pLEX307-TMPRSS11D-puro", "sequence-type": "addgene-full", "addgene_id": "158475", - "references": [], "kit": null, "file": "data/addgene_plasmids/158475.addgene-full.gb" }, @@ -121801,7 +153532,10 @@ "plasmid_name": "pDONR221_SLC2A5", "sequence-type": "addgene-full", "addgene_id": "132090", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132090.addgene-full.gb" }, @@ -121810,7 +153544,10 @@ "plasmid_name": "PDEST-pSP172BSSPE-pFOGc::RfA-HA", "sequence-type": "addgene-full", "addgene_id": "186406", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186406.addgene-full.gb" }, @@ -121819,7 +153556,10 @@ "plasmid_name": "R791-X12-636: His6-MBP-tev-Hs.NF1 ABC (2-1540)", "sequence-type": "addgene-full", "addgene_id": "159577", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA119.010934", + "https://www.ncbi.nlm.nih.gov/pubmed/31836666" + ], "kit": null, "file": "data/addgene_plasmids/159577.addgene-full.gb" }, @@ -121828,7 +153568,10 @@ "plasmid_name": "pHAGE-SGK3__KRT9", "sequence-type": "addgene-full", "addgene_id": "116837", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116837.addgene-full.gb" }, @@ -121837,7 +153580,10 @@ "plasmid_name": "pLEX307 RFP", "sequence-type": "addgene-full", "addgene_id": "163976", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-20320-y", + "https://www.ncbi.nlm.nih.gov/pubmed/33420033" + ], "kit": null, "file": "data/addgene_plasmids/163976.addgene-full.gb" }, @@ -121846,7 +153592,10 @@ "plasmid_name": "pHAGE-RAC1", "sequence-type": "addgene-full", "addgene_id": "116783", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116783.addgene-full.gb" }, @@ -121855,7 +153604,10 @@ "plasmid_name": "pHAGE-FAM134C-GFP", "sequence-type": "addgene-full", "addgene_id": "201927", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "file": "data/addgene_plasmids/201927.addgene-full.gb" }, @@ -121864,7 +153616,10 @@ "plasmid_name": "pHAGE-PIK3CA-D549N", "sequence-type": "addgene-full", "addgene_id": "116463", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116463.addgene-full.gb" }, @@ -121873,7 +153628,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP7", "sequence-type": "addgene-full", "addgene_id": "141261", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141261.addgene-full.gb" }, @@ -121882,7 +153640,10 @@ "plasmid_name": "pLenti CMV Puro DEST (w118-1) TSPAN9", "sequence-type": "addgene-full", "addgene_id": "107502", - "references": [], + "references": [ + "https://doi.org/10.1084/jem.20180570", + "https://www.ncbi.nlm.nih.gov/pubmed/30404791" + ], "kit": null, "file": "data/addgene_plasmids/107502.addgene-full.gb" }, @@ -121891,7 +153652,6 @@ "plasmid_name": "pLenti-PGK-c-myc-2A-CDK4(R24C)-GFP-Puro", "sequence-type": "addgene-full", "addgene_id": "83107", - "references": [], "kit": null, "file": "data/addgene_plasmids/83107.addgene-full.gb" }, @@ -121900,7 +153660,10 @@ "plasmid_name": "pAS2-1-Brr2", "sequence-type": "addgene-full", "addgene_id": "99995", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.062927.117", + "https://www.ncbi.nlm.nih.gov/pubmed/29054886" + ], "kit": null, "file": "data/addgene_plasmids/99995.addgene-full.gb" }, @@ -121909,7 +153672,10 @@ "plasmid_name": "R717-X57-566: His6-MBP-tev-Hs.RAF1(52-188)", "sequence-type": "addgene-full", "addgene_id": "159697", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.005669", + "https://www.ncbi.nlm.nih.gov/pubmed/30559287" + ], "kit": null, "file": "data/addgene_plasmids/159697.addgene-full.gb" }, @@ -121918,7 +153684,10 @@ "plasmid_name": "pDONR221-BSX", "sequence-type": "depositor-full", "addgene_id": "101410", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101410.depositor-full.gb" }, @@ -121927,7 +153696,10 @@ "plasmid_name": "hsp70:GalT-RFP", "sequence-type": "addgene-full", "addgene_id": "105966", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201604095", + "https://www.ncbi.nlm.nih.gov/pubmed/27810916" + ], "kit": null, "file": "data/addgene_plasmids/105966.addgene-full.gb" }, @@ -121936,7 +153708,10 @@ "plasmid_name": "pExp_TRE:TAL14", "sequence-type": "depositor-full", "addgene_id": "51794", - "references": [], + "references": [ + "https://doi.org/10.1021/sb500263b", + "https://www.ncbi.nlm.nih.gov/pubmed/25369267" + ], "kit": null, "file": "data/addgene_plasmids/51794.depositor-full.gb" }, @@ -121945,7 +153720,10 @@ "plasmid_name": "pUC-DEST-R5R4", "sequence-type": "addgene-full", "addgene_id": "141055", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141055.addgene-full.gb" }, @@ -121955,8 +153733,8 @@ "sequence-type": "depositor-full", "addgene_id": "14420", "references": [ - "https://doi.org/10.1016/j.molcel.2014.05.008", - "https://www.ncbi.nlm.nih.gov/pubmed/24882210" + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" ], "kit": { "name": "Yeast Gateway Kit", @@ -121969,7 +153747,10 @@ "plasmid_name": "pTO_CHMP3_LAP", "sequence-type": "addgene-full", "addgene_id": "101849", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb3559", + "https://www.ncbi.nlm.nih.gov/pubmed/28604678" + ], "kit": null, "file": "data/addgene_plasmids/101849.addgene-full.gb" }, @@ -121978,7 +153759,6 @@ "plasmid_name": "R777-E109 Hs.IRS1", "sequence-type": "depositor-full", "addgene_id": "70393", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -121990,7 +153770,10 @@ "plasmid_name": "pHAGE-RAF1-N64K", "sequence-type": "addgene-full", "addgene_id": "116657", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116657.addgene-full.gb" }, @@ -121999,7 +153782,10 @@ "plasmid_name": "pDL65", "sequence-type": "addgene-full", "addgene_id": "175891", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175891.addgene-full.gb" }, @@ -122008,7 +153794,9 @@ "plasmid_name": "Gatewayp221oxCerulean-oxVenus", "sequence-type": "depositor-full", "addgene_id": "68047", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26142908" + ], "kit": null, "file": "data/addgene_plasmids/68047.depositor-full.gb" }, @@ -122017,7 +153805,10 @@ "plasmid_name": "pDONR223_B2M_p.D54N", "sequence-type": "addgene-full", "addgene_id": "81303", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -122029,7 +153820,10 @@ "plasmid_name": "IFNAR2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176938", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176938.addgene-full.gb" }, @@ -122038,7 +153832,6 @@ "plasmid_name": "R777-E125 Hs.MAPK1", "sequence-type": "depositor-full", "addgene_id": "70409", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -122050,7 +153843,10 @@ "plasmid_name": "PB-TAC-OK+9MS", "sequence-type": "depositor-full", "addgene_id": "80482", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2015.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/25772473" + ], "kit": null, "file": "data/addgene_plasmids/80482.depositor-full.gb" }, @@ -122059,7 +153855,6 @@ "plasmid_name": "p3E_he1a:mCherry", "sequence-type": "addgene-full", "addgene_id": "113881", - "references": [], "kit": null, "file": "data/addgene_plasmids/113881.addgene-full.gb" }, @@ -122068,7 +153863,10 @@ "plasmid_name": "pCFJ1320", "sequence-type": "depositor-full", "addgene_id": "84829", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.072", + "https://www.ncbi.nlm.nih.gov/pubmed/27374334" + ], "kit": null, "file": "data/addgene_plasmids/84829.depositor-full.gb" }, @@ -122077,7 +153875,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L1L2", "sequence-type": "addgene-full", "addgene_id": "113735", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -122089,7 +153890,10 @@ "plasmid_name": "pCM5.30", "sequence-type": "depositor-full", "addgene_id": "19399", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19399.depositor-full.gb" }, @@ -122098,7 +153902,10 @@ "plasmid_name": "pDONR223-MET", "sequence-type": "addgene-full", "addgene_id": "23889", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -122110,7 +153917,6 @@ "plasmid_name": "pENTR223 CD147, open", "sequence-type": "addgene-full", "addgene_id": "149720", - "references": [], "kit": null, "file": "data/addgene_plasmids/149720.addgene-full.gb" }, @@ -122119,7 +153925,10 @@ "plasmid_name": "pLX302 OAS1-V5 puro", "sequence-type": "addgene-full", "addgene_id": "158641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158641.addgene-full.gb" }, @@ -122128,7 +153937,10 @@ "plasmid_name": "MAC_N_LHX2", "sequence-type": "addgene-full", "addgene_id": "167776", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167776.addgene-full.gb" }, @@ -122137,7 +153949,10 @@ "plasmid_name": "pDONR223_HRH4_p.S115L", "sequence-type": "addgene-full", "addgene_id": "81398", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -122149,7 +153964,10 @@ "plasmid_name": "pCM3.32", "sequence-type": "depositor-full", "addgene_id": "19403", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19403.depositor-full.gb" }, @@ -122158,7 +153976,10 @@ "plasmid_name": "Flag-HA-CYLD", "sequence-type": "addgene-full", "addgene_id": "22544", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22544.addgene-full.gb" }, @@ -122167,7 +153988,9 @@ "plasmid_name": "pDest-Sumo", "sequence-type": "addgene-full", "addgene_id": "106980", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29170489" + ], "kit": null, "file": "data/addgene_plasmids/106980.addgene-full.gb" }, @@ -122176,7 +153999,10 @@ "plasmid_name": "pDONR223_MAPK13_WT", "sequence-type": "addgene-full", "addgene_id": "82231", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82231.addgene-full.gb" }, @@ -122185,7 +154011,10 @@ "plasmid_name": "pGL4_EGR1p-BC0130-luc2", "sequence-type": "addgene-full", "addgene_id": "214646", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214646.addgene-full.gb" }, @@ -122194,7 +154023,10 @@ "plasmid_name": "pLenti-CMV-DNAJC5", "sequence-type": "addgene-full", "addgene_id": "205727", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.85837", + "https://www.ncbi.nlm.nih.gov/pubmed/36626307" + ], "kit": null, "file": "data/addgene_plasmids/205727.addgene-full.gb" }, @@ -122203,7 +154035,10 @@ "plasmid_name": "p5EyrkE1", "sequence-type": "addgene-full", "addgene_id": "90119", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90119.addgene-full.gb" }, @@ -122212,7 +154047,10 @@ "plasmid_name": "pMH-Flag-HA", "sequence-type": "addgene-full", "addgene_id": "101766", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1616602114", + "https://www.ncbi.nlm.nih.gov/pubmed/28325877" + ], "kit": null, "file": "data/addgene_plasmids/101766.addgene-full.gb" }, @@ -122221,7 +154059,10 @@ "plasmid_name": "pENTR.CMV.ON", "sequence-type": "depositor-full", "addgene_id": "32687", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "file": "data/addgene_plasmids/32687.depositor-full.gb" }, @@ -122230,7 +154071,10 @@ "plasmid_name": "pDONR221_SLC35G2", "sequence-type": "addgene-full", "addgene_id": "132144", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132144.addgene-full.gb" }, @@ -122239,7 +154083,10 @@ "plasmid_name": "pWS053", "sequence-type": "addgene-full", "addgene_id": "123025", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123025.addgene-full.gb" }, @@ -122248,7 +154095,6 @@ "plasmid_name": "MECP2 - P152L in pENTR", "sequence-type": "addgene-full", "addgene_id": "216596", - "references": [], "kit": null, "file": "data/addgene_plasmids/216596.addgene-full.gb" }, @@ -122257,7 +154103,10 @@ "plasmid_name": "pDONR_P4-P1R_5'arm_apobb.1", "sequence-type": "addgene-full", "addgene_id": "128662", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11259-w", + "https://www.ncbi.nlm.nih.gov/pubmed/31366908" + ], "kit": null, "file": "data/addgene_plasmids/128662.addgene-full.gb" }, @@ -122266,7 +154115,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF3b", "sequence-type": "addgene-full", "addgene_id": "168854", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168854.addgene-full.gb" }, @@ -122275,7 +154127,10 @@ "plasmid_name": "TFORF2990", "sequence-type": "addgene-full", "addgene_id": "144466", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144466.addgene-full.gb" }, @@ -122284,7 +154139,10 @@ "plasmid_name": "pME-mKate2-GPI-pA", "sequence-type": "addgene-full", "addgene_id": "109542", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109542.addgene-full.gb" }, @@ -122293,7 +154151,10 @@ "plasmid_name": "pDONR223_NRAS_p.Q61R", "sequence-type": "addgene-full", "addgene_id": "81652", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -122305,7 +154166,9 @@ "plasmid_name": "pDONR221-NUDT5", "sequence-type": "addgene-full", "addgene_id": "219954", - "references": [], + "references": [ + "https://doi.org/10.21203/rs.3.rs-4644671/v1" + ], "kit": null, "file": "data/addgene_plasmids/219954.addgene-full.gb" }, @@ -122314,7 +154177,6 @@ "plasmid_name": "p667-UBC-NUAK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189910", - "references": [], "kit": null, "file": "data/addgene_plasmids/189910.addgene-full.gb" }, @@ -122323,7 +154185,9 @@ "plasmid_name": "pUB-nHyPer2 (NLS:HyPer2:NLS)", "sequence-type": "addgene-full", "addgene_id": "84730", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/28663550" + ], "kit": null, "file": "data/addgene_plasmids/84730.addgene-full.gb" }, @@ -122332,7 +154196,10 @@ "plasmid_name": "pDONR221-SLC25A52_STOP", "sequence-type": "addgene-full", "addgene_id": "161197", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161197.addgene-full.gb" }, @@ -122341,7 +154208,6 @@ "plasmid_name": "pcDNA3.2-V5-DEST-hSFRP1(aa53-166)", "sequence-type": "addgene-full", "addgene_id": "189544", - "references": [], "kit": null, "file": "data/addgene_plasmids/189544.addgene-full.gb" }, @@ -122350,7 +154216,10 @@ "plasmid_name": "pEBTet-SNAP-STIL", "sequence-type": "addgene-full", "addgene_id": "136795", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136795.addgene-full.gb" }, @@ -122359,7 +154228,10 @@ "plasmid_name": "pDP085", "sequence-type": "addgene-full", "addgene_id": "198425", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms15120", + "https://www.ncbi.nlm.nih.gov/pubmed/28513600" + ], "kit": null, "file": "data/addgene_plasmids/198425.addgene-full.gb" }, @@ -122368,7 +154240,10 @@ "plasmid_name": "pEBTet-SNAP-Cep70", "sequence-type": "addgene-full", "addgene_id": "136821", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136821.addgene-full.gb" }, @@ -122377,7 +154252,10 @@ "plasmid_name": "pDONR221_SLC17A9", "sequence-type": "addgene-full", "addgene_id": "131973", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131973.addgene-full.gb" }, @@ -122386,7 +154264,10 @@ "plasmid_name": "TFORF3310", "sequence-type": "addgene-full", "addgene_id": "144786", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144786.addgene-full.gb" }, @@ -122395,7 +154276,10 @@ "plasmid_name": "pHAGE-EGFR-T263I", "sequence-type": "addgene-full", "addgene_id": "116306", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116306.addgene-full.gb" }, @@ -122404,7 +154288,10 @@ "plasmid_name": "actc1b-mKate2-rab3db", "sequence-type": "addgene-full", "addgene_id": "109639", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109639.addgene-full.gb" }, @@ -122413,7 +154300,10 @@ "plasmid_name": "pLX304_zeo_eGFP", "sequence-type": "addgene-full", "addgene_id": "160095", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160095.addgene-full.gb" }, @@ -122422,7 +154312,10 @@ "plasmid_name": "pDONR223_RASA1_p.R913Q", "sequence-type": "addgene-full", "addgene_id": "81529", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -122434,7 +154327,10 @@ "plasmid_name": "pDONR223_STK11_p.G56V", "sequence-type": "addgene-full", "addgene_id": "82760", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82760.addgene-full.gb" }, @@ -122443,7 +154339,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP6", "sequence-type": "addgene-full", "addgene_id": "154405", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154405.addgene-full.gb" }, @@ -122461,7 +154360,9 @@ "plasmid_name": "pENTR221-BNT162b2\u0394UTR", "sequence-type": "addgene-full", "addgene_id": "171214", - "references": [], + "references": [ + "https://doi.org/10.1101/2021.04.27.21256151" + ], "kit": null, "file": "data/addgene_plasmids/171214.addgene-full.gb" }, @@ -122470,7 +154371,9 @@ "plasmid_name": "pPJ174(JPUB_006779)", "sequence-type": "depositor-full", "addgene_id": "83827", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26975050" + ], "kit": null, "file": "data/addgene_plasmids/83827.depositor-full.gb" }, @@ -122479,7 +154382,10 @@ "plasmid_name": "pDONR223_ARAF_WT", "sequence-type": "addgene-full", "addgene_id": "82900", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82900.addgene-full.gb" }, @@ -122488,7 +154394,6 @@ "plasmid_name": "pDONR221-SARS-CoV-2 S1 RBD", "sequence-type": "addgene-full", "addgene_id": "167013", - "references": [], "kit": null, "file": "data/addgene_plasmids/167013.addgene-full.gb" }, @@ -122497,7 +154402,10 @@ "plasmid_name": "KZ001: pMVP (L3-L2) P2A-eYFP + polyA", "sequence-type": "addgene-full", "addgene_id": "121770", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121770.addgene-full.gb" }, @@ -122506,7 +154414,10 @@ "plasmid_name": "p8194 MSCV-P C-FlagHA 31E7 R77S", "sequence-type": "addgene-full", "addgene_id": "163308", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "file": "data/addgene_plasmids/163308.addgene-full.gb" }, @@ -122515,7 +154426,10 @@ "plasmid_name": "pAFMW-Gwpep(Dm)-Nbr[C399-625]", "sequence-type": "addgene-full", "addgene_id": "188592", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188592.addgene-full.gb" }, @@ -122524,7 +154438,6 @@ "plasmid_name": "pFRT-TODestFLAGHAhTTP", "sequence-type": "depositor-full", "addgene_id": "48738", - "references": [], "kit": null, "file": "data/addgene_plasmids/48738.depositor-full.gb" }, @@ -122533,7 +154446,10 @@ "plasmid_name": "pHAGE-EGFR-G312W", "sequence-type": "addgene-full", "addgene_id": "116249", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116249.addgene-full.gb" }, @@ -122542,7 +154458,10 @@ "plasmid_name": "pSAM2_mCherry_Baf60c", "sequence-type": "addgene-full", "addgene_id": "72691", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72691.addgene-full.gb" }, @@ -122551,7 +154470,10 @@ "plasmid_name": "TFORF3053", "sequence-type": "addgene-full", "addgene_id": "144529", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144529.addgene-full.gb" }, @@ -122560,7 +154482,6 @@ "plasmid_name": "pCWXPGR-pTF-NT3", "sequence-type": "addgene-full", "addgene_id": "114279", - "references": [], "kit": null, "file": "data/addgene_plasmids/114279.addgene-full.gb" }, @@ -122569,7 +154490,10 @@ "plasmid_name": "pDONR221-SLC6A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161338", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161338.addgene-full.gb" }, @@ -122578,7 +154502,10 @@ "plasmid_name": "pDONR223_HRH4_WT", "sequence-type": "addgene-full", "addgene_id": "81786", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -122602,7 +154529,10 @@ "plasmid_name": "pPB-MPP8-1\u2013729_Flag2-Blast", "sequence-type": "addgene-full", "addgene_id": "175040", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-23308-4", + "https://www.ncbi.nlm.nih.gov/pubmed/34031396" + ], "kit": null, "file": "data/addgene_plasmids/175040.addgene-full.gb" }, @@ -122611,7 +154541,10 @@ "plasmid_name": "pDONR221 Brx1", "sequence-type": "depositor-full", "addgene_id": "63741", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63741.depositor-full.gb" }, @@ -122620,7 +154553,10 @@ "plasmid_name": "pEntry_MERS-CoV-ORF8b", "sequence-type": "depositor-full", "addgene_id": "168834", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168834.depositor-full.gb" }, @@ -122629,7 +154565,10 @@ "plasmid_name": "pHAGE-BRAF-T599Ifs*13", "sequence-type": "addgene-full", "addgene_id": "116132", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116132.addgene-full.gb" }, @@ -122638,7 +154577,10 @@ "plasmid_name": "pMOS013E: Entry vector for: mito-roGFP2-Grx1 glutathione redox sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163073", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163073.addgene-full.gb" }, @@ -122647,7 +154589,10 @@ "plasmid_name": "actc1b-TCAP-mKate2", "sequence-type": "addgene-full", "addgene_id": "109496", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109496.addgene-full.gb" }, @@ -122656,7 +154601,10 @@ "plasmid_name": "pMXs-Ascl1", "sequence-type": "addgene-full", "addgene_id": "134671", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199723", + "https://www.ncbi.nlm.nih.gov/pubmed/35748297" + ], "kit": null, "file": "data/addgene_plasmids/134671.addgene-full.gb" }, @@ -122665,7 +154613,10 @@ "plasmid_name": "pLenti-PGK-Puro-TK-NLS-mTurq2-PCNA", "sequence-type": "addgene-full", "addgene_id": "118617", - "references": [], + "references": [ + "https://doi.org/10.1080/15384101.2018.1547001", + "https://www.ncbi.nlm.nih.gov/pubmed/30421640" + ], "kit": null, "file": "data/addgene_plasmids/118617.addgene-full.gb" }, @@ -122674,7 +154625,10 @@ "plasmid_name": "TFORF3176", "sequence-type": "addgene-full", "addgene_id": "144652", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144652.addgene-full.gb" }, @@ -122683,7 +154637,6 @@ "plasmid_name": "HCP9", "sequence-type": "addgene-full", "addgene_id": "166111", - "references": [], "kit": null, "file": "data/addgene_plasmids/166111.addgene-full.gb" }, @@ -122692,7 +154645,10 @@ "plasmid_name": "pDONR221-SLC6A15_STOP", "sequence-type": "addgene-full", "addgene_id": "161043", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161043.addgene-full.gb" }, @@ -122701,7 +154657,10 @@ "plasmid_name": "pDONR-IAA6", "sequence-type": "depositor-full", "addgene_id": "83869", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83869.depositor-full.gb" }, @@ -122710,7 +154669,10 @@ "plasmid_name": "pAV hTERTsh", "sequence-type": "addgene-full", "addgene_id": "111380", - "references": [], + "references": [ + "https://doi.org/10.3390/genes7080046", + "https://www.ncbi.nlm.nih.gov/pubmed/27537914" + ], "kit": null, "file": "data/addgene_plasmids/111380.addgene-full.gb" }, @@ -122719,7 +154681,10 @@ "plasmid_name": "Lenti-4XPRE-GFP", "sequence-type": "addgene-full", "addgene_id": "206170", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "file": "data/addgene_plasmids/206170.addgene-full.gb" }, @@ -122728,7 +154693,10 @@ "plasmid_name": "CMYA5T2/pDEST15", "sequence-type": "addgene-full", "addgene_id": "98109", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "file": "data/addgene_plasmids/98109.addgene-full.gb" }, @@ -122737,7 +154705,10 @@ "plasmid_name": "pDONR223_TRIM55_p.E369G", "sequence-type": "addgene-full", "addgene_id": "81466", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -122749,7 +154720,9 @@ "plasmid_name": "p3e tdTomato", "sequence-type": "addgene-full", "addgene_id": "188700", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "file": "data/addgene_plasmids/188700.addgene-full.gb" }, @@ -122758,7 +154731,10 @@ "plasmid_name": "pFRT-TODestFLAGHAhFMRPiso1I304N", "sequence-type": "depositor-full", "addgene_id": "48692", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11737", + "https://www.ncbi.nlm.nih.gov/pubmed/23235829" + ], "kit": null, "file": "data/addgene_plasmids/48692.depositor-full.gb" }, @@ -122767,7 +154743,10 @@ "plasmid_name": "pGWB401", "sequence-type": "depositor-full", "addgene_id": "74795", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74795.depositor-full.gb" }, @@ -122776,7 +154755,6 @@ "plasmid_name": "R777-E059 Hs.EIF4EBP3", "sequence-type": "depositor-full", "addgene_id": "70343", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -122788,7 +154766,10 @@ "plasmid_name": "pYPQ143", "sequence-type": "depositor-full", "addgene_id": "69295", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69295.depositor-full.gb" }, @@ -122797,7 +154778,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-nsp6", "sequence-type": "addgene-full", "addgene_id": "168869", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168869.addgene-full.gb" }, @@ -122806,7 +154790,10 @@ "plasmid_name": "pGWB533", "sequence-type": "depositor-full", "addgene_id": "74872", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74872.depositor-full.gb" }, @@ -122815,7 +154802,10 @@ "plasmid_name": "VanGlow-RR", "sequence-type": "depositor-full", "addgene_id": "83343", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.01.014", + "https://www.ncbi.nlm.nih.gov/pubmed/28245922" + ], "kit": null, "file": "data/addgene_plasmids/83343.depositor-full.gb" }, @@ -122824,7 +154814,10 @@ "plasmid_name": "pENTR PKAKTRn-Clover", "sequence-type": "addgene-full", "addgene_id": "177199", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2022.02.006", + "https://www.ncbi.nlm.nih.gov/pubmed/35316656" + ], "kit": null, "file": "data/addgene_plasmids/177199.addgene-full.gb" }, @@ -122833,7 +154826,10 @@ "plasmid_name": "TFORF3418", "sequence-type": "addgene-full", "addgene_id": "144894", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144894.addgene-full.gb" }, @@ -122842,7 +154838,10 @@ "plasmid_name": "pDONR223-ZNF423", "sequence-type": "addgene-full", "addgene_id": "88083", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88083.addgene-full.gb" }, @@ -122851,7 +154850,10 @@ "plasmid_name": "actc1b-mKate2-rab18b", "sequence-type": "addgene-full", "addgene_id": "109604", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109604.addgene-full.gb" }, @@ -122860,7 +154862,10 @@ "plasmid_name": "TFORF3244", "sequence-type": "addgene-full", "addgene_id": "144720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144720.addgene-full.gb" }, @@ -122869,7 +154874,10 @@ "plasmid_name": "pCLX-R4-DEST-R2", "sequence-type": "depositor-full", "addgene_id": "45956", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-61779-095-9_8", + "https://www.ncbi.nlm.nih.gov/pubmed/21590398" + ], "kit": null, "file": "data/addgene_plasmids/45956.depositor-full.gb" }, @@ -122878,7 +154886,10 @@ "plasmid_name": "JDW 763 (pCS2-EYFP-hsKRAS4B-WT)", "sequence-type": "addgene-full", "addgene_id": "156408", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156408.addgene-full.gb" }, @@ -122887,7 +154898,10 @@ "plasmid_name": "IH001: pMVP (L5-L4) HA epitope tag", "sequence-type": "addgene-full", "addgene_id": "121699", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121699.addgene-full.gb" }, @@ -122896,7 +154910,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 C264A", "sequence-type": "addgene-full", "addgene_id": "129297", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129297.addgene-full.gb" }, @@ -122905,7 +154922,10 @@ "plasmid_name": "pCFJ326 - operon for germline expression", "sequence-type": "depositor-full", "addgene_id": "34875", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34875.depositor-full.gb" }, @@ -122914,7 +154934,10 @@ "plasmid_name": "pDONR223_CTCF_p.P552S", "sequence-type": "addgene-full", "addgene_id": "81514", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -122926,7 +154949,10 @@ "plasmid_name": "pDONR221-SLC22A6_STOP", "sequence-type": "addgene-full", "addgene_id": "161131", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161131.addgene-full.gb" }, @@ -122935,7 +154961,6 @@ "plasmid_name": "R777-E340 Hs.STK4-nostop", "sequence-type": "depositor-full", "addgene_id": "70624", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -122947,7 +154972,10 @@ "plasmid_name": "pAG423GAL-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14197", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -122959,7 +154987,10 @@ "plasmid_name": "p21-M694V-MEFV", "sequence-type": "addgene-full", "addgene_id": "134703", - "references": [], + "references": [ + "https://doi.org/10.15252/emmm.201910547", + "https://www.ncbi.nlm.nih.gov/pubmed/31589380" + ], "kit": null, "file": "data/addgene_plasmids/134703.addgene-full.gb" }, @@ -122968,7 +154999,6 @@ "plasmid_name": "Ad-FOXA2", "sequence-type": "addgene-full", "addgene_id": "131581", - "references": [], "kit": null, "file": "data/addgene_plasmids/131581.addgene-full.gb" }, @@ -122977,7 +155007,10 @@ "plasmid_name": "TFORF3535", "sequence-type": "depositor-full", "addgene_id": "145011", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145011.depositor-full.gb" }, @@ -122986,7 +155019,10 @@ "plasmid_name": "pSAM2_mCherry_GFP", "sequence-type": "addgene-full", "addgene_id": "78172", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/78172.addgene-full.gb" }, @@ -122995,7 +155031,10 @@ "plasmid_name": "pDONR221-Embigin", "sequence-type": "addgene-full", "addgene_id": "221417", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221417.addgene-full.gb" }, @@ -123004,7 +155043,10 @@ "plasmid_name": "pHAGE-EGFR-L838M", "sequence-type": "addgene-full", "addgene_id": "116274", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116274.addgene-full.gb" }, @@ -123013,7 +155055,10 @@ "plasmid_name": "PHF6", "sequence-type": "addgene-full", "addgene_id": "155821", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155821.addgene-full.gb" }, @@ -123022,7 +155067,10 @@ "plasmid_name": "pDONR223-ZNF581", "sequence-type": "addgene-full", "addgene_id": "88157", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88157.addgene-full.gb" }, @@ -123031,7 +155079,10 @@ "plasmid_name": "TFORF3464", "sequence-type": "addgene-full", "addgene_id": "144940", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144940.addgene-full.gb" }, @@ -123040,7 +155091,10 @@ "plasmid_name": "NUDT16L1", "sequence-type": "addgene-full", "addgene_id": "155795", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155795.addgene-full.gb" }, @@ -123049,7 +155103,10 @@ "plasmid_name": "CPSF1", "sequence-type": "addgene-full", "addgene_id": "155475", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155475.addgene-full.gb" }, @@ -123058,7 +155115,10 @@ "plasmid_name": "TFORF3038", "sequence-type": "addgene-full", "addgene_id": "144514", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144514.addgene-full.gb" }, @@ -123067,7 +155127,10 @@ "plasmid_name": "pEntry_HCoV-NL63-Nucleocapsid", "sequence-type": "addgene-full", "addgene_id": "168926", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168926.addgene-full.gb" }, @@ -123076,7 +155139,6 @@ "plasmid_name": "R777-E213 Hs.RAF1", "sequence-type": "depositor-full", "addgene_id": "70497", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -123088,7 +155150,10 @@ "plasmid_name": "pHAGE-BRAF-S467L", "sequence-type": "addgene-full", "addgene_id": "116194", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116194.addgene-full.gb" }, @@ -123097,7 +155162,10 @@ "plasmid_name": "pDONR223_WIPI1_WT", "sequence-type": "addgene-full", "addgene_id": "81894", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -123109,7 +155177,10 @@ "plasmid_name": "p{ie1-DsRed::FRT-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182191", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182191.addgene-full.gb" }, @@ -123118,7 +155189,10 @@ "plasmid_name": "pLX302-MKP5-V5 puro", "sequence-type": "addgene-full", "addgene_id": "87770", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.O116.063487", + "https://www.ncbi.nlm.nih.gov/pubmed/28174228" + ], "kit": null, "file": "data/addgene_plasmids/87770.addgene-full.gb" }, @@ -123127,7 +155201,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-DSTYK _IDG-K", "sequence-type": "addgene-full", "addgene_id": "158182", - "references": [], "kit": null, "file": "data/addgene_plasmids/158182.addgene-full.gb" }, @@ -123136,7 +155209,10 @@ "plasmid_name": "JT601: pMVP/SB/mCherry-DEST", "sequence-type": "addgene-full", "addgene_id": "121862", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121862.addgene-full.gb" }, @@ -123145,7 +155221,10 @@ "plasmid_name": "MEK1 (S218D,S222D)-pcw107", "sequence-type": "addgene-full", "addgene_id": "64604", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/64604.addgene-full.gb" }, @@ -123154,7 +155233,10 @@ "plasmid_name": "AAEL004399 GPB5", "sequence-type": "addgene-full", "addgene_id": "115395", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115395.addgene-full.gb" }, @@ -123163,7 +155245,9 @@ "plasmid_name": "pHAGE pGK hNLRP3-mNG", "sequence-type": "addgene-full", "addgene_id": "218643", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218643.addgene-full.gb" }, @@ -123172,7 +155256,10 @@ "plasmid_name": "pDD372", "sequence-type": "addgene-full", "addgene_id": "91824", - "references": [], + "references": [ + "https://doi.org/10.17912/W2KT0N", + "https://www.ncbi.nlm.nih.gov/pubmed/32550377" + ], "kit": null, "file": "data/addgene_plasmids/91824.addgene-full.gb" }, @@ -123181,7 +155268,10 @@ "plasmid_name": "pDONR223_CHD2_WT", "sequence-type": "addgene-full", "addgene_id": "81768", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -123193,7 +155283,10 @@ "plasmid_name": "pcDNA5FRT/TO-UBE2QL1-GFP", "sequence-type": "addgene-full", "addgene_id": "124667", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.201948014", + "https://www.ncbi.nlm.nih.gov/pubmed/31432621" + ], "kit": null, "file": "data/addgene_plasmids/124667.addgene-full.gb" }, @@ -123202,7 +155295,10 @@ "plasmid_name": "pDONR223_S100A13_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82975", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82975.addgene-full.gb" }, @@ -123211,7 +155307,10 @@ "plasmid_name": "pMartini Gate C R2-R1", "sequence-type": "depositor-full", "addgene_id": "36436", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0042102", + "https://www.ncbi.nlm.nih.gov/pubmed/22848718" + ], "kit": null, "file": "data/addgene_plasmids/36436.depositor-full.gb" }, @@ -123220,7 +155319,10 @@ "plasmid_name": "pDONR223_PTPN12_p.G99R", "sequence-type": "addgene-full", "addgene_id": "81488", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -123232,7 +155334,10 @@ "plasmid_name": "IX203: pMVP (L5-L4) V5 epitope tag", "sequence-type": "addgene-full", "addgene_id": "121705", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121705.addgene-full.gb" }, @@ -123241,7 +155346,10 @@ "plasmid_name": "pLSLGFP", "sequence-type": "depositor-full", "addgene_id": "51494", - "references": [], + "references": [ + "https://doi.org/10.1105/tpc.113.119792", + "https://www.ncbi.nlm.nih.gov/pubmed/24443519" + ], "kit": null, "file": "data/addgene_plasmids/51494.depositor-full.gb" }, @@ -123250,7 +155358,10 @@ "plasmid_name": "TFORF3432", "sequence-type": "addgene-full", "addgene_id": "144908", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144908.addgene-full.gb" }, @@ -123259,7 +155370,10 @@ "plasmid_name": "pAD/CMV/V5-DEST-Rac1-2G", "sequence-type": "depositor-full", "addgene_id": "66112", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.09.002", + "https://www.ncbi.nlm.nih.gov/pubmed/26439400" + ], "kit": null, "file": "data/addgene_plasmids/66112.depositor-full.gb" }, @@ -123268,7 +155382,10 @@ "plasmid_name": "TFORF3151", "sequence-type": "addgene-full", "addgene_id": "144627", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144627.addgene-full.gb" }, @@ -123277,7 +155394,9 @@ "plasmid_name": "pMpGWB229", "sequence-type": "depositor-full", "addgene_id": "68620", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68620.depositor-full.gb" }, @@ -123286,7 +155405,10 @@ "plasmid_name": "p3E-OSBP", "sequence-type": "depositor-full", "addgene_id": "67677", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67677.depositor-full.gb" }, @@ -123295,7 +155417,10 @@ "plasmid_name": "p3E-rab3aa", "sequence-type": "addgene-full", "addgene_id": "109703", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109703.addgene-full.gb" }, @@ -123304,7 +155429,10 @@ "plasmid_name": "pME rras_Q61R", "sequence-type": "addgene-full", "addgene_id": "201057", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201820", + "https://www.ncbi.nlm.nih.gov/pubmed/37708300" + ], "kit": null, "file": "data/addgene_plasmids/201057.addgene-full.gb" }, @@ -123313,7 +155441,10 @@ "plasmid_name": "pAC1825_pCR8-dCasRx-RBM38", "sequence-type": "addgene-full", "addgene_id": "118662", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118662.addgene-full.gb" }, @@ -123322,7 +155453,10 @@ "plasmid_name": "p3E-DrCavin1a", "sequence-type": "addgene-full", "addgene_id": "194291", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "file": "data/addgene_plasmids/194291.addgene-full.gb" }, @@ -123331,7 +155465,10 @@ "plasmid_name": "ETS2_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "177005", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/177005.addgene-full.gb" }, @@ -123340,7 +155477,9 @@ "plasmid_name": "pDONR221-DDX5\u0394PrD", "sequence-type": "addgene-full", "addgene_id": "166164", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166164.addgene-full.gb" }, @@ -123349,7 +155488,10 @@ "plasmid_name": "pENTR-L5-LucmiR-EGFP-L2", "sequence-type": "depositor-full", "addgene_id": "32587", - "references": [], + "references": [ + "https://doi.org/10.3389/fnmol.2011.00008", + "https://www.ncbi.nlm.nih.gov/pubmed/21772812" + ], "kit": null, "file": "data/addgene_plasmids/32587.depositor-full.gb" }, @@ -123358,7 +155500,10 @@ "plasmid_name": "pENTR223-BPLF1_1001-2000", "sequence-type": "addgene-full", "addgene_id": "198584", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/198584.addgene-full.gb" }, @@ -123367,7 +155512,10 @@ "plasmid_name": "pAG424GAL-ccdB-HA", "sequence-type": "depositor-full", "addgene_id": "14247", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -123379,7 +155527,6 @@ "plasmid_name": "pgLAP2", "sequence-type": "depositor-full", "addgene_id": "19703", - "references": [], "kit": null, "file": "data/addgene_plasmids/19703.depositor-full.gb" }, @@ -123388,7 +155535,10 @@ "plasmid_name": "pDONR223_HERPUD2_p.P46L", "sequence-type": "addgene-full", "addgene_id": "81413", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -123400,7 +155550,10 @@ "plasmid_name": "pEPYCeGM0001", "sequence-type": "addgene-full", "addgene_id": "196141", - "references": [], + "references": [ + "https://doi.org/10.1021/acssynbio.3c00094", + "https://www.ncbi.nlm.nih.gov/pubmed/37856867" + ], "kit": null, "file": "data/addgene_plasmids/196141.addgene-full.gb" }, @@ -123409,7 +155562,9 @@ "plasmid_name": "pENTR1a-tagRFP-KDEL", "sequence-type": "addgene-full", "addgene_id": "114177", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29176619" + ], "kit": null, "file": "data/addgene_plasmids/114177.addgene-full.gb" }, @@ -123418,7 +155573,10 @@ "plasmid_name": "pDONR221-kcnk10b", "sequence-type": "addgene-full", "addgene_id": "208994", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/208994.addgene-full.gb" }, @@ -123427,7 +155585,10 @@ "plasmid_name": "pYPQ233-STU", "sequence-type": "addgene-full", "addgene_id": "138111", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138111.addgene-full.gb" }, @@ -123436,7 +155597,10 @@ "plasmid_name": "pWPI-E2F2", "sequence-type": "addgene-full", "addgene_id": "114297", - "references": [], + "references": [ + "https://doi.org/10.4161/cc.25834", + "https://www.ncbi.nlm.nih.gov/pubmed/23907129" + ], "kit": null, "file": "data/addgene_plasmids/114297.addgene-full.gb" }, @@ -123445,7 +155609,10 @@ "plasmid_name": "pHAGE-BRAF-G464R", "sequence-type": "addgene-full", "addgene_id": "116147", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116147.addgene-full.gb" }, @@ -123455,8 +155622,8 @@ "sequence-type": "depositor-full", "addgene_id": "22770", "references": [ - "https://doi.org/10.1016/j.mimet.2016.12.017", - "https://www.ncbi.nlm.nih.gov/pubmed/28017692" + "https://doi.org/10.1158/0008-5472.CAN-07-1590", + "https://www.ncbi.nlm.nih.gov/pubmed/17909066" ], "kit": null, "file": "data/addgene_plasmids/22770.depositor-full.gb" @@ -123466,7 +155633,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep290", "sequence-type": "addgene-full", "addgene_id": "136854", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136854.addgene-full.gb" }, @@ -123475,7 +155645,10 @@ "plasmid_name": "pDEST-N2H-F1-empty vector", "sequence-type": "addgene-full", "addgene_id": "125551", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11809-2", + "https://www.ncbi.nlm.nih.gov/pubmed/31467278" + ], "kit": null, "file": "data/addgene_plasmids/125551.addgene-full.gb" }, @@ -123484,7 +155657,10 @@ "plasmid_name": "pDONR221_MPC1", "sequence-type": "addgene-full", "addgene_id": "131906", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131906.addgene-full.gb" }, @@ -123493,7 +155669,10 @@ "plasmid_name": "pHAGE-ESR1-Y537N", "sequence-type": "addgene-full", "addgene_id": "116373", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116373.addgene-full.gb" }, @@ -123502,7 +155681,10 @@ "plasmid_name": "TFORF3371", "sequence-type": "addgene-full", "addgene_id": "144847", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144847.addgene-full.gb" }, @@ -123511,7 +155693,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp8", "sequence-type": "addgene-full", "addgene_id": "168821", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168821.addgene-full.gb" }, @@ -123520,7 +155705,10 @@ "plasmid_name": "TFORF2937", "sequence-type": "addgene-full", "addgene_id": "144413", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144413.addgene-full.gb" }, @@ -123529,7 +155717,6 @@ "plasmid_name": "UBI10:RFP-RabG3B-DN", "sequence-type": "addgene-full", "addgene_id": "102370", - "references": [], "kit": null, "file": "data/addgene_plasmids/102370.addgene-full.gb" }, @@ -123538,7 +155725,10 @@ "plasmid_name": "actc1b-mKate2-ARF6", "sequence-type": "addgene-full", "addgene_id": "109537", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109537.addgene-full.gb" }, @@ -123547,7 +155737,10 @@ "plasmid_name": "pCMV-IRES-Renilla Luciferase-IRES-Gateway-Firefly Luciferase (pIRIGF)", "sequence-type": "addgene-full", "addgene_id": "101139", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/101139.addgene-full.gb" }, @@ -123556,7 +155749,10 @@ "plasmid_name": "pDONR223_IDH2_p.I139F", "sequence-type": "addgene-full", "addgene_id": "81627", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -123568,7 +155764,6 @@ "plasmid_name": "p426 1-F GW", "sequence-type": "depositor-full", "addgene_id": "58548", - "references": [], "kit": null, "file": "data/addgene_plasmids/58548.depositor-full.gb" }, @@ -123577,7 +155772,10 @@ "plasmid_name": "pDONR221-SLC35F1_STOP", "sequence-type": "addgene-full", "addgene_id": "161299", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161299.addgene-full.gb" }, @@ -123586,7 +155784,10 @@ "plasmid_name": "pDONR223_MTM1_WT", "sequence-type": "addgene-full", "addgene_id": "81908", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -123598,7 +155799,10 @@ "plasmid_name": "5'-3xFLAG Camta2+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212049", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212049.addgene-full.gb" }, @@ -123607,7 +155811,10 @@ "plasmid_name": "hDAGLb-V5", "sequence-type": "addgene-full", "addgene_id": "87677", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.biochem.6b00221", + "https://www.ncbi.nlm.nih.gov/pubmed/27115711" + ], "kit": null, "file": "data/addgene_plasmids/87677.addgene-full.gb" }, @@ -123616,7 +155823,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP14", "sequence-type": "addgene-full", "addgene_id": "158365", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158365.addgene-full.gb" }, @@ -123625,7 +155835,10 @@ "plasmid_name": "TFORF3012", "sequence-type": "addgene-full", "addgene_id": "144488", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144488.addgene-full.gb" }, @@ -123634,7 +155847,10 @@ "plasmid_name": "pcDNA pDEST40 Cas9-POLD3", "sequence-type": "addgene-full", "addgene_id": "183194", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75415", + "https://www.ncbi.nlm.nih.gov/pubmed/34898428" + ], "kit": null, "file": "data/addgene_plasmids/183194.addgene-full.gb" }, @@ -123643,7 +155859,10 @@ "plasmid_name": "pAG305GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14209", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -123655,7 +155874,10 @@ "plasmid_name": "pEN_TT mCh-V5-NES-EGFP-EGFR NLS", "sequence-type": "addgene-full", "addgene_id": "192315", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192315.addgene-full.gb" }, @@ -123664,7 +155886,10 @@ "plasmid_name": "TFORF3292", "sequence-type": "addgene-full", "addgene_id": "144768", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144768.addgene-full.gb" }, @@ -123673,7 +155898,10 @@ "plasmid_name": "pENTR-ZmIAA9", "sequence-type": "addgene-full", "addgene_id": "188433", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.19.01475", + "https://www.ncbi.nlm.nih.gov/pubmed/32123041" + ], "kit": null, "file": "data/addgene_plasmids/188433.addgene-full.gb" }, @@ -123682,7 +155910,10 @@ "plasmid_name": "pDONR221-SLC23A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161179", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161179.addgene-full.gb" }, @@ -123691,7 +155922,10 @@ "plasmid_name": "pJA245", "sequence-type": "depositor-full", "addgene_id": "21506", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "file": "data/addgene_plasmids/21506.depositor-full.gb" }, @@ -123700,7 +155934,10 @@ "plasmid_name": "pEV1.02", "sequence-type": "depositor-full", "addgene_id": "37487", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.047654", + "https://www.ncbi.nlm.nih.gov/pubmed/20335358" + ], "kit": null, "file": "data/addgene_plasmids/37487.depositor-full.gb" }, @@ -123709,7 +155946,10 @@ "plasmid_name": "pENTR D-TOPO-C3_18", "sequence-type": "depositor-full", "addgene_id": "60264", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60264.depositor-full.gb" }, @@ -123718,7 +155958,10 @@ "plasmid_name": "pYPQ230-RVR", "sequence-type": "addgene-full", "addgene_id": "108861", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2018.03.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29567452" + ], "kit": null, "file": "data/addgene_plasmids/108861.addgene-full.gb" }, @@ -123727,7 +155970,10 @@ "plasmid_name": "pLenti CRISPR sgSHMT2_2", "sequence-type": "addgene-full", "addgene_id": "106310", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.024", + "https://www.ncbi.nlm.nih.gov/pubmed/29452640" + ], "kit": null, "file": "data/addgene_plasmids/106310.addgene-full.gb" }, @@ -123736,7 +155982,10 @@ "plasmid_name": "TFORF3085", "sequence-type": "addgene-full", "addgene_id": "144561", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144561.addgene-full.gb" }, @@ -123745,7 +155994,6 @@ "plasmid_name": "Hs.NRAS G13D", "sequence-type": "depositor-full", "addgene_id": "83177", - "references": [], "kit": null, "file": "data/addgene_plasmids/83177.depositor-full.gb" }, @@ -123754,7 +156002,10 @@ "plasmid_name": "pDONR221-SLC4A7_STOP", "sequence-type": "addgene-full", "addgene_id": "161370", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161370.addgene-full.gb" }, @@ -123763,7 +156014,10 @@ "plasmid_name": "pDEST26 Ago2 4A", "sequence-type": "depositor-full", "addgene_id": "59907", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2013.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/23603119" + ], "kit": null, "file": "data/addgene_plasmids/59907.depositor-full.gb" }, @@ -123784,7 +156038,10 @@ "plasmid_name": "pDONR223_TRAF3_WT", "sequence-type": "addgene-full", "addgene_id": "81755", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -123796,7 +156053,10 @@ "plasmid_name": "pDONR221-ZNF527", "sequence-type": "depositor-full", "addgene_id": "101447", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101447.depositor-full.gb" }, @@ -123805,7 +156065,10 @@ "plasmid_name": "HD301: pMVP (R4-R3) \u03b2gal", "sequence-type": "addgene-full", "addgene_id": "121738", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121738.addgene-full.gb" }, @@ -123814,7 +156077,10 @@ "plasmid_name": "pDONR221-SLC17A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161090", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161090.addgene-full.gb" }, @@ -123823,7 +156089,10 @@ "plasmid_name": "pDONR223_EXOSC4_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82948", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82948.addgene-full.gb" }, @@ -123832,7 +156101,10 @@ "plasmid_name": "pCROPseq-VEX-optimized-scaffold", "sequence-type": "addgene-full", "addgene_id": "203321", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2023.03.035", + "https://www.ncbi.nlm.nih.gov/pubmed/37137305" + ], "kit": null, "file": "data/addgene_plasmids/203321.addgene-full.gb" }, @@ -123841,7 +156113,10 @@ "plasmid_name": "TFORF3459", "sequence-type": "addgene-full", "addgene_id": "144935", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144935.addgene-full.gb" }, @@ -123850,7 +156125,10 @@ "plasmid_name": "pHAGE-BRAF-T599I", "sequence-type": "addgene-full", "addgene_id": "116201", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116201.addgene-full.gb" }, @@ -123859,7 +156137,10 @@ "plasmid_name": "pMXs-hu-N-Myc", "sequence-type": "depositor-full", "addgene_id": "50772", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1009374107", + "https://www.ncbi.nlm.nih.gov/pubmed/20660764" + ], "kit": null, "file": "data/addgene_plasmids/50772.depositor-full.gb" }, @@ -123868,7 +156149,10 @@ "plasmid_name": "pDONR221_SLC15A1", "sequence-type": "addgene-full", "addgene_id": "131874", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131874.addgene-full.gb" }, @@ -123877,7 +156161,10 @@ "plasmid_name": "TFORF3205", "sequence-type": "addgene-full", "addgene_id": "144681", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144681.addgene-full.gb" }, @@ -123886,7 +156173,9 @@ "plasmid_name": "pDONR221-CLF2(2of3)", "sequence-type": "addgene-full", "addgene_id": "166159", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166159.addgene-full.gb" }, @@ -123895,7 +156184,6 @@ "plasmid_name": "R777-E126 Hs.MAPK1-nostop", "sequence-type": "depositor-full", "addgene_id": "70410", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -123907,7 +156195,10 @@ "plasmid_name": "pMuLE ENTR CMV mCherry R4-R3", "sequence-type": "depositor-full", "addgene_id": "62147", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62147.depositor-full.gb" }, @@ -123916,7 +156207,10 @@ "plasmid_name": "pInducer-FRA1", "sequence-type": "addgene-full", "addgene_id": "192267", - "references": [], + "references": [ + "https://doi.org/10.1007/s00018-022-04638-y", + "https://www.ncbi.nlm.nih.gov/pubmed/36534167" + ], "kit": null, "file": "data/addgene_plasmids/192267.addgene-full.gb" }, @@ -123925,7 +156219,10 @@ "plasmid_name": "pNOC-NLUC", "sequence-type": "addgene-full", "addgene_id": "98141", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.14314", + "https://www.ncbi.nlm.nih.gov/pubmed/30883973" + ], "kit": null, "file": "data/addgene_plasmids/98141.addgene-full.gb" }, @@ -123934,7 +156231,10 @@ "plasmid_name": "pCFJ1955", "sequence-type": "depositor-full", "addgene_id": "84830", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2016.05.072", + "https://www.ncbi.nlm.nih.gov/pubmed/27374334" + ], "kit": null, "file": "data/addgene_plasmids/84830.depositor-full.gb" }, @@ -123943,7 +156243,6 @@ "plasmid_name": "pmCellFree_KA3_SARS-COV-2_RBD", "sequence-type": "addgene-full", "addgene_id": "169405", - "references": [], "kit": null, "file": "data/addgene_plasmids/169405.addgene-full.gb" }, @@ -123952,7 +156251,10 @@ "plasmid_name": "LF701: pMAGIC (L1-R5) hU6::xCas9(3.7) gRNA scaffold", "sequence-type": "addgene-full", "addgene_id": "121817", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121817.addgene-full.gb" }, @@ -123961,7 +156263,10 @@ "plasmid_name": "p7137 pHAGE-P-CMVt-N-HA-GAW-EIF3M", "sequence-type": "addgene-full", "addgene_id": "100149", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100149.addgene-full.gb" }, @@ -123970,7 +156275,10 @@ "plasmid_name": "A1-LCD-30G+30S", "sequence-type": "addgene-full", "addgene_id": "178684", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178684.addgene-full.gb" }, @@ -123979,7 +156287,9 @@ "plasmid_name": "pPB-cT3G-cERP2-RB1", "sequence-type": "addgene-full", "addgene_id": "222550", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222550.addgene-full.gb" }, @@ -123988,7 +156298,9 @@ "plasmid_name": "pME-ERT2-Cre-ERT2", "sequence-type": "addgene-full", "addgene_id": "82587", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/24643048" + ], "kit": null, "file": "data/addgene_plasmids/82587.addgene-full.gb" }, @@ -123997,7 +156309,10 @@ "plasmid_name": "pDONR221-SLC2A11_STOP", "sequence-type": "depositor-full", "addgene_id": "161245", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161245.depositor-full.gb" }, @@ -124006,7 +156321,10 @@ "plasmid_name": "pSGE_240_pAGW_V5", "sequence-type": "depositor-full", "addgene_id": "71188", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71188.depositor-full.gb" }, @@ -124015,7 +156333,10 @@ "plasmid_name": "pEBTetDBl-CLIP-Cep72", "sequence-type": "addgene-full", "addgene_id": "136869", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136869.addgene-full.gb" }, @@ -124024,7 +156345,6 @@ "plasmid_name": "Hs.KRAS4b C185S", "sequence-type": "depositor-full", "addgene_id": "83139", - "references": [], "kit": null, "file": "data/addgene_plasmids/83139.depositor-full.gb" }, @@ -124033,7 +156353,10 @@ "plasmid_name": "pDONR223_KRAS_p.G12F", "sequence-type": "addgene-full", "addgene_id": "82807", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82807.addgene-full.gb" }, @@ -124042,7 +156365,9 @@ "plasmid_name": "pLV-EgI-NeoR", "sequence-type": "addgene-full", "addgene_id": "207175", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.11.21.568191" + ], "kit": null, "file": "data/addgene_plasmids/207175.addgene-full.gb" }, @@ -124051,7 +156376,10 @@ "plasmid_name": "pcDNA3_GLP1R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194378", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194378.addgene-full.gb" }, @@ -124060,7 +156388,9 @@ "plasmid_name": "pMpGWB123", "sequence-type": "depositor-full", "addgene_id": "68577", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68577.depositor-full.gb" }, @@ -124069,7 +156399,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-N-mEGFP", "sequence-type": "addgene-full", "addgene_id": "223949", - "references": [], "kit": null, "file": "data/addgene_plasmids/223949.addgene-full.gb" }, @@ -124078,7 +156407,10 @@ "plasmid_name": "Active Wnt5B-V5", "sequence-type": "depositor-full", "addgene_id": "43814", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43814.depositor-full.gb" }, @@ -124087,7 +156419,10 @@ "plasmid_name": "pEntr-GATA4flbio", "sequence-type": "depositor-full", "addgene_id": "32937", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1016959108", + "https://www.ncbi.nlm.nih.gov/pubmed/21415370" + ], "kit": null, "file": "data/addgene_plasmids/32937.depositor-full.gb" }, @@ -124096,7 +156431,10 @@ "plasmid_name": "TRAPPC8_pLX307", "sequence-type": "addgene-full", "addgene_id": "98375", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98375.addgene-full.gb" }, @@ -124105,7 +156443,10 @@ "plasmid_name": "pInducer20 CARD8-HA PAM L368G", "sequence-type": "addgene-full", "addgene_id": "169985", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169985.addgene-full.gb" }, @@ -124114,7 +156455,10 @@ "plasmid_name": "pMuLE ENTR 7SK R4-R3", "sequence-type": "depositor-full", "addgene_id": "62109", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62109.depositor-full.gb" }, @@ -124123,7 +156467,10 @@ "plasmid_name": "5'-3xFLAG Smarcc2-exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212074", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212074.addgene-full.gb" }, @@ -124132,7 +156479,10 @@ "plasmid_name": "pCM1.27", "sequence-type": "depositor-full", "addgene_id": "21378", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21378.depositor-full.gb" }, @@ -124141,7 +156491,10 @@ "plasmid_name": "pDONR223_MAP2K4_p.S184L", "sequence-type": "addgene-full", "addgene_id": "81681", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -124153,7 +156506,10 @@ "plasmid_name": "p3E-ARF6", "sequence-type": "addgene-full", "addgene_id": "109591", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109591.addgene-full.gb" }, @@ -124162,7 +156518,10 @@ "plasmid_name": "MAC-SARS-CoV-2 NSP7", "sequence-type": "addgene-full", "addgene_id": "158358", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158358.addgene-full.gb" }, @@ -124171,7 +156530,10 @@ "plasmid_name": "PB-TET-mOct4", "sequence-type": "depositor-full", "addgene_id": "20907", - "references": [], + "references": [ + "https://doi.org/10.1038/nature07863", + "https://www.ncbi.nlm.nih.gov/pubmed/19252478" + ], "kit": null, "file": "data/addgene_plasmids/20907.depositor-full.gb" }, @@ -124180,7 +156542,10 @@ "plasmid_name": "R619-M90-303: CMV51p> HCoV-229E S-2P-T4f-3C-His8-Strep2x2", "sequence-type": "addgene-full", "addgene_id": "166016", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105686", + "https://www.ncbi.nlm.nih.gov/pubmed/32504802" + ], "kit": null, "file": "data/addgene_plasmids/166016.addgene-full.gb" }, @@ -124189,7 +156554,10 @@ "plasmid_name": "pSLIK 3xFLAG-TTI1 zeo", "sequence-type": "addgene-full", "addgene_id": "192328", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192328.addgene-full.gb" }, @@ -124198,7 +156566,10 @@ "plasmid_name": "pLenti CMV TRE3G Neo GFP-Progerin", "sequence-type": "addgene-full", "addgene_id": "118710", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.08.024", + "https://www.ncbi.nlm.nih.gov/pubmed/26341717" + ], "kit": null, "file": "data/addgene_plasmids/118710.addgene-full.gb" }, @@ -124207,7 +156578,10 @@ "plasmid_name": "p3E-rab18a", "sequence-type": "addgene-full", "addgene_id": "109671", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109671.addgene-full.gb" }, @@ -124216,7 +156590,10 @@ "plasmid_name": "TFORF3279", "sequence-type": "addgene-full", "addgene_id": "144755", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144755.addgene-full.gb" }, @@ -124225,7 +156602,9 @@ "plasmid_name": "psgRNA", "sequence-type": "addgene-full", "addgene_id": "114005", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/29765036" + ], "kit": null, "file": "data/addgene_plasmids/114005.addgene-full.gb" }, @@ -124234,7 +156613,10 @@ "plasmid_name": "pCMU-APr", "sequence-type": "depositor-full", "addgene_id": "61182", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61182.depositor-full.gb" }, @@ -124243,7 +156625,10 @@ "plasmid_name": "pDEST_FLAG-HUWE1_UBA/UIM-mut", "sequence-type": "addgene-full", "addgene_id": "187152", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/187152.addgene-full.gb" }, @@ -124252,7 +156637,10 @@ "plasmid_name": "pDONR223_AKT1_p.E267G", "sequence-type": "addgene-full", "addgene_id": "81561", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -124264,7 +156652,10 @@ "plasmid_name": "GABPA_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176970", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176970.addgene-full.gb" }, @@ -124273,7 +156664,6 @@ "plasmid_name": "g15t pDONR", "sequence-type": "addgene-full", "addgene_id": "117466", - "references": [], "kit": null, "file": "data/addgene_plasmids/117466.addgene-full.gb" }, @@ -124282,7 +156672,10 @@ "plasmid_name": "pYPQ300", "sequence-type": "addgene-full", "addgene_id": "205414", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2023.1251903", + "https://www.ncbi.nlm.nih.gov/pubmed/37901282" + ], "kit": null, "file": "data/addgene_plasmids/205414.addgene-full.gb" }, @@ -124291,7 +156684,10 @@ "plasmid_name": "pDONR223_CBX1_WT", "sequence-type": "addgene-full", "addgene_id": "82102", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82102.addgene-full.gb" }, @@ -124300,7 +156696,10 @@ "plasmid_name": "1457_pDEST_miniTol2_R4-R2_Cryst_mCherry", "sequence-type": "addgene-full", "addgene_id": "171796", - "references": [], + "references": [ + "https://doi.org/10.3389/fphys.2023.1221310", + "https://www.ncbi.nlm.nih.gov/pubmed/37601640" + ], "kit": null, "file": "data/addgene_plasmids/171796.addgene-full.gb" }, @@ -124309,7 +156708,10 @@ "plasmid_name": "pDONR221-ZNF442", "sequence-type": "addgene-full", "addgene_id": "101455", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101455.addgene-full.gb" }, @@ -124318,7 +156720,10 @@ "plasmid_name": "pDONR221_SLC26A8", "sequence-type": "addgene-full", "addgene_id": "132277", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132277.addgene-full.gb" }, @@ -124327,7 +156732,10 @@ "plasmid_name": "pDONR221_SLC7A5", "sequence-type": "addgene-full", "addgene_id": "132197", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132197.addgene-full.gb" }, @@ -124336,7 +156744,9 @@ "plasmid_name": "p3E-mCherry-FRB-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82595", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82595.depositor-full.gb" }, @@ -124345,7 +156755,10 @@ "plasmid_name": "C453-E04: attB4-CMV51p>-attB5", "sequence-type": "addgene-full", "addgene_id": "162973", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -124357,7 +156770,10 @@ "plasmid_name": "pENTR223-BORF1", "sequence-type": "addgene-full", "addgene_id": "195804", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195804.addgene-full.gb" }, @@ -124366,7 +156782,10 @@ "plasmid_name": "pT2-cryR;dusp5CE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90151", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90151.addgene-full.gb" }, @@ -124375,7 +156794,10 @@ "plasmid_name": "pDONR221-SLCO5A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161415", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161415.addgene-full.gb" }, @@ -124384,7 +156806,10 @@ "plasmid_name": "pHAGE-SRSF2-P95_R102delPPDSHHSR", "sequence-type": "addgene-full", "addgene_id": "116684", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116684.addgene-full.gb" }, @@ -124393,7 +156818,10 @@ "plasmid_name": "pEAHISMRSAPPFK", "sequence-type": "addgene-full", "addgene_id": "97003", - "references": [], + "references": [ + "https://doi.org/10.1007/s10969-010-9090-y", + "https://www.ncbi.nlm.nih.gov/pubmed/20419351" + ], "kit": null, "file": "data/addgene_plasmids/97003.addgene-full.gb" }, @@ -124402,7 +156830,10 @@ "plasmid_name": "p35S::AtSOBIR1-YFPc", "sequence-type": "addgene-full", "addgene_id": "86162", - "references": [], + "references": [ + "https://doi.org/10.1111/nph.13802", + "https://www.ncbi.nlm.nih.gov/pubmed/26765243" + ], "kit": null, "file": "data/addgene_plasmids/86162.addgene-full.gb" }, @@ -124411,7 +156842,10 @@ "plasmid_name": "pCM1.57", "sequence-type": "depositor-full", "addgene_id": "17252", - "references": [], + "references": [ + "https://doi.org/10.1895/wormbook.1.148.1", + "https://www.ncbi.nlm.nih.gov/pubmed/20169625" + ], "kit": null, "file": "data/addgene_plasmids/17252.depositor-full.gb" }, @@ -124420,7 +156854,10 @@ "plasmid_name": "pDE43-MCK", "sequence-type": "depositor-full", "addgene_id": "49523", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "file": "data/addgene_plasmids/49523.depositor-full.gb" }, @@ -124429,7 +156866,10 @@ "plasmid_name": "pHAGE-PIK3CD-C416R", "sequence-type": "addgene-full", "addgene_id": "116564", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116564.addgene-full.gb" }, @@ -124438,7 +156878,10 @@ "plasmid_name": "pDONR223_STAP2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "83000", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/83000.addgene-full.gb" }, @@ -124447,7 +156890,10 @@ "plasmid_name": "tetO-MESP1", "sequence-type": "addgene-full", "addgene_id": "170694", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170694.addgene-full.gb" }, @@ -124456,7 +156902,10 @@ "plasmid_name": "DD-Cas9 with filler sequence and Venus (EDCPV)", "sequence-type": "addgene-full", "addgene_id": "90085", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms14370", + "https://www.ncbi.nlm.nih.gov/pubmed/28224990" + ], "kit": null, "file": "data/addgene_plasmids/90085.addgene-full.gb" }, @@ -124465,7 +156914,10 @@ "plasmid_name": "pLenti6/V5/DEST-VPS35", "sequence-type": "addgene-full", "addgene_id": "21691", - "references": [], + "references": [ + "https://doi.org/10.1038/nature08109", + "https://www.ncbi.nlm.nih.gov/pubmed/19553991" + ], "kit": null, "file": "data/addgene_plasmids/21691.addgene-full.gb" }, @@ -124474,7 +156926,10 @@ "plasmid_name": "pET22b-His6-UBCH7", "sequence-type": "addgene-full", "addgene_id": "212711", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.11.016", + "https://www.ncbi.nlm.nih.gov/pubmed/38103558" + ], "kit": null, "file": "data/addgene_plasmids/212711.addgene-full.gb" }, @@ -124483,7 +156938,10 @@ "plasmid_name": "pCMB-AUTr", "sequence-type": "depositor-full", "addgene_id": "61205", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.12706", + "https://www.ncbi.nlm.nih.gov/pubmed/25329881" + ], "kit": null, "file": "data/addgene_plasmids/61205.depositor-full.gb" }, @@ -124492,7 +156950,6 @@ "plasmid_name": "IDG_TMC5_OE_1", "sequence-type": "addgene-full", "addgene_id": "161621", - "references": [], "kit": null, "file": "data/addgene_plasmids/161621.addgene-full.gb" }, @@ -124501,7 +156958,10 @@ "plasmid_name": "pPPED", "sequence-type": "addgene-full", "addgene_id": "162468", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.617553", + "https://www.ncbi.nlm.nih.gov/pubmed/34713247" + ], "kit": null, "file": "data/addgene_plasmids/162468.addgene-full.gb" }, @@ -124510,7 +156970,10 @@ "plasmid_name": "pDONR223-JAK2", "sequence-type": "addgene-full", "addgene_id": "23915", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -124522,7 +156985,10 @@ "plasmid_name": "pSC24", "sequence-type": "addgene-full", "addgene_id": "104798", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104798.addgene-full.gb" }, @@ -124531,7 +156997,10 @@ "plasmid_name": "pJA281", "sequence-type": "depositor-full", "addgene_id": "22513", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0020082", + "https://www.ncbi.nlm.nih.gov/pubmed/21637852" + ], "kit": null, "file": "data/addgene_plasmids/22513.depositor-full.gb" }, @@ -124540,7 +157009,10 @@ "plasmid_name": "1a154 (H77)", "sequence-type": "addgene-full", "addgene_id": "177689", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "file": "data/addgene_plasmids/177689.addgene-full.gb" }, @@ -124549,7 +157021,6 @@ "plasmid_name": "R777-E240 Hs.RASGRF1-nostop", "sequence-type": "depositor-full", "addgene_id": "70524", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -124561,7 +157032,10 @@ "plasmid_name": "pAG425GAL-ECFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14297", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -124573,7 +157047,10 @@ "plasmid_name": "pLentiX2-PURO-shLKB1-Hu", "sequence-type": "addgene-full", "addgene_id": "61242", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2014.06.021", + "https://www.ncbi.nlm.nih.gov/pubmed/25042806" + ], "kit": null, "file": "data/addgene_plasmids/61242.addgene-full.gb" }, @@ -124582,7 +157059,10 @@ "plasmid_name": "pSF463", "sequence-type": "addgene-full", "addgene_id": "167671", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167671.addgene-full.gb" }, @@ -124591,7 +157071,10 @@ "plasmid_name": "pDONR221-SLC5A10_STOP", "sequence-type": "depositor-full", "addgene_id": "161371", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161371.depositor-full.gb" }, @@ -124600,7 +157083,6 @@ "plasmid_name": "pLenti6.3_HES2", "sequence-type": "addgene-full", "addgene_id": "124070", - "references": [], "kit": null, "file": "data/addgene_plasmids/124070.addgene-full.gb" }, @@ -124609,7 +157091,10 @@ "plasmid_name": "pDONR221_SLC25A53", "sequence-type": "addgene-full", "addgene_id": "132043", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132043.addgene-full.gb" }, @@ -124618,7 +157103,6 @@ "plasmid_name": "pDONR221-si:dkey-79d12.5", "sequence-type": "addgene-full", "addgene_id": "192736", - "references": [], "kit": null, "file": "data/addgene_plasmids/192736.addgene-full.gb" }, @@ -124627,7 +157111,10 @@ "plasmid_name": "pENTR-2B-Tbx5", "sequence-type": "addgene-full", "addgene_id": "98619", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.06942", + "https://www.ncbi.nlm.nih.gov/pubmed/26146939" + ], "kit": null, "file": "data/addgene_plasmids/98619.addgene-full.gb" }, @@ -124636,7 +157123,10 @@ "plasmid_name": "MAC_N_SP7", "sequence-type": "addgene-full", "addgene_id": "167798", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167798.addgene-full.gb" }, @@ -124645,7 +157135,10 @@ "plasmid_name": "MAC_N_ELK4", "sequence-type": "addgene-full", "addgene_id": "187745", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/187745.addgene-full.gb" }, @@ -124654,7 +157147,10 @@ "plasmid_name": "pDONR223_ILKAP_p.S61Y", "sequence-type": "addgene-full", "addgene_id": "81376", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -124666,7 +157162,10 @@ "plasmid_name": "pCFJ2215 - Intron GG3 - 900 bp", "sequence-type": "addgene-full", "addgene_id": "159882", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159882.addgene-full.gb" }, @@ -124675,7 +157174,10 @@ "plasmid_name": "pENTR-PpU6P-sgRNA-L3L2", "sequence-type": "addgene-full", "addgene_id": "113740", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -124687,7 +157189,10 @@ "plasmid_name": "pENTR2-L3-SfoI-Cerulean-PBL-R1", "sequence-type": "addgene-full", "addgene_id": "141020", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141020.addgene-full.gb" }, @@ -124696,7 +157201,6 @@ "plasmid_name": "DDX3X - K215G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216578", - "references": [], "kit": null, "file": "data/addgene_plasmids/216578.addgene-full.gb" }, @@ -124705,7 +157209,10 @@ "plasmid_name": "2xmyc-RAB10", "sequence-type": "addgene-full", "addgene_id": "164631", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164631.addgene-full.gb" }, @@ -124714,7 +157221,10 @@ "plasmid_name": "pHAGE-eGFP-OPTN", "sequence-type": "addgene-full", "addgene_id": "175750", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2015.08.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26365381" + ], "kit": null, "file": "data/addgene_plasmids/175750.addgene-full.gb" }, @@ -124723,7 +157233,10 @@ "plasmid_name": "pGWB435", "sequence-type": "depositor-full", "addgene_id": "74825", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74825.depositor-full.gb" }, @@ -124732,7 +157245,10 @@ "plasmid_name": "pGC48", "sequence-type": "depositor-full", "addgene_id": "19679", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19679.depositor-full.gb" }, @@ -124741,7 +157257,10 @@ "plasmid_name": "pDONR223_BTRC_WT", "sequence-type": "addgene-full", "addgene_id": "82244", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82244.addgene-full.gb" }, @@ -124762,7 +157281,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0425-luc2", "sequence-type": "addgene-full", "addgene_id": "214633", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214633.addgene-full.gb" }, @@ -124771,7 +157293,9 @@ "plasmid_name": "pDONR223-TAF5-FL", "sequence-type": "addgene-full", "addgene_id": "209047", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2024.05.024" + ], "kit": null, "file": "data/addgene_plasmids/209047.addgene-full.gb" }, @@ -124780,7 +157304,10 @@ "plasmid_name": "pWS936", "sequence-type": "addgene-full", "addgene_id": "123050", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123050.addgene-full.gb" }, @@ -124789,7 +157316,10 @@ "plasmid_name": "pDONR221_SLC37A1", "sequence-type": "addgene-full", "addgene_id": "132131", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132131.addgene-full.gb" }, @@ -124798,7 +157328,6 @@ "plasmid_name": "R777-E030 Hs.CNKSR2-nostop", "sequence-type": "depositor-full", "addgene_id": "70314", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -124810,7 +157339,10 @@ "plasmid_name": "pHAGE-PIK3CB-R321Q", "sequence-type": "addgene-full", "addgene_id": "116559", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116559.addgene-full.gb" }, @@ -124819,7 +157351,10 @@ "plasmid_name": "pSLIK 3xFLAG-MAVS hygro", "sequence-type": "addgene-full", "addgene_id": "158634", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2021.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/33740397" + ], "kit": null, "file": "data/addgene_plasmids/158634.addgene-full.gb" }, @@ -124828,7 +157363,6 @@ "plasmid_name": "MECP2 - S411R in pENTR", "sequence-type": "addgene-full", "addgene_id": "216603", - "references": [], "kit": null, "file": "data/addgene_plasmids/216603.addgene-full.gb" }, @@ -124837,7 +157371,10 @@ "plasmid_name": "TFORF3532", "sequence-type": "depositor-full", "addgene_id": "145008", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145008.depositor-full.gb" }, @@ -124846,7 +157383,10 @@ "plasmid_name": "pcDNA5/FRT/TO/MACROD2", "sequence-type": "addgene-full", "addgene_id": "172579", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-020-64623-y", + "https://www.ncbi.nlm.nih.gov/pubmed/32427867" + ], "kit": null, "file": "data/addgene_plasmids/172579.addgene-full.gb" }, @@ -124855,7 +157395,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NN_G1397-DddtoxA-C", "sequence-type": "addgene-full", "addgene_id": "171730", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171730.addgene-full.gb" }, @@ -124864,7 +157407,10 @@ "plasmid_name": "pGL2313", "sequence-type": "addgene-full", "addgene_id": "137053", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-4939-9210-2_10", + "https://www.ncbi.nlm.nih.gov/pubmed/30980305" + ], "kit": null, "file": "data/addgene_plasmids/137053.addgene-full.gb" }, @@ -124873,7 +157419,10 @@ "plasmid_name": "BirA-Myc_N_FOXL1", "sequence-type": "addgene-full", "addgene_id": "167703", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167703.addgene-full.gb" }, @@ -124882,7 +157431,6 @@ "plasmid_name": "pAG426-GAL-Alpha-synuclein", "sequence-type": "addgene-full", "addgene_id": "181715", - "references": [], "kit": null, "file": "data/addgene_plasmids/181715.addgene-full.gb" }, @@ -124891,7 +157439,10 @@ "plasmid_name": "pYPQ143-ZmUbi-tRNA", "sequence-type": "addgene-full", "addgene_id": "158400", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00953-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34168320" + ], "kit": null, "file": "data/addgene_plasmids/158400.addgene-full.gb" }, @@ -124900,7 +157451,9 @@ "plasmid_name": "pDestTol2-QUAS:GCaMP7a", "sequence-type": "addgene-full", "addgene_id": "184817", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.89516.2" + ], "kit": null, "file": "data/addgene_plasmids/184817.addgene-full.gb" }, @@ -124909,7 +157462,10 @@ "plasmid_name": "pDEST40-2XHA-Src-Y419F", "sequence-type": "addgene-full", "addgene_id": "140316", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.09.035", + "https://www.ncbi.nlm.nih.gov/pubmed/30304684" + ], "kit": null, "file": "data/addgene_plasmids/140316.addgene-full.gb" }, @@ -124918,7 +157474,10 @@ "plasmid_name": "R703-M72-303: CMV51p> Halotag-Hs.KRAS4b", "sequence-type": "addgene-full", "addgene_id": "159679", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "file": "data/addgene_plasmids/159679.addgene-full.gb" }, @@ -124927,7 +157486,6 @@ "plasmid_name": "p667-UBC-AAK1-V5_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135257", - "references": [], "kit": null, "file": "data/addgene_plasmids/135257.addgene-full.gb" }, @@ -124936,7 +157494,6 @@ "plasmid_name": "pENTR-R2L3-IRES-Venus-pA", "sequence-type": "addgene-full", "addgene_id": "139542", - "references": [], "kit": null, "file": "data/addgene_plasmids/139542.addgene-full.gb" }, @@ -124945,7 +157502,10 @@ "plasmid_name": "pDONR221_SVOP", "sequence-type": "addgene-full", "addgene_id": "132305", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132305.addgene-full.gb" }, @@ -124954,7 +157514,10 @@ "plasmid_name": "pDONR223-CSF1R", "sequence-type": "addgene-full", "addgene_id": "23928", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -124966,7 +157529,6 @@ "plasmid_name": "pSC37", "sequence-type": "addgene-full", "addgene_id": "104811", - "references": [], "kit": null, "file": "data/addgene_plasmids/104811.addgene-full.gb" }, @@ -124975,7 +157537,10 @@ "plasmid_name": "pDEST-FLAG", "sequence-type": "addgene-full", "addgene_id": "183511", - "references": [], + "references": [ + "https://doi.org/10.1186/1755-8417-1-5", + "https://www.ncbi.nlm.nih.gov/pubmed/19046415" + ], "kit": null, "file": "data/addgene_plasmids/183511.addgene-full.gb" }, @@ -124984,7 +157549,10 @@ "plasmid_name": "pLX_314-HRI-V5", "sequence-type": "addgene-full", "addgene_id": "202434", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-22-1230", + "https://www.ncbi.nlm.nih.gov/pubmed/36576405" + ], "kit": null, "file": "data/addgene_plasmids/202434.addgene-full.gb" }, @@ -124993,7 +157561,10 @@ "plasmid_name": "mTALEAD 16S rRNA-1", "sequence-type": "addgene-full", "addgene_id": "210833", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad678", + "https://www.ncbi.nlm.nih.gov/pubmed/38128544" + ], "kit": null, "file": "data/addgene_plasmids/210833.addgene-full.gb" }, @@ -125002,7 +157573,10 @@ "plasmid_name": "pHAGE-IGF1R-N146T", "sequence-type": "addgene-full", "addgene_id": "116416", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116416.addgene-full.gb" }, @@ -125011,7 +157585,10 @@ "plasmid_name": "pGC276", "sequence-type": "depositor-full", "addgene_id": "19637", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19637.depositor-full.gb" }, @@ -125020,7 +157597,10 @@ "plasmid_name": "pAG303GAL-ccdB-Cerulean", "sequence-type": "depositor-full", "addgene_id": "14373", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -125032,7 +157612,10 @@ "plasmid_name": "pGGEV_4'_+nls-mCherry-Flag-_+1_BK+", "sequence-type": "depositor-full", "addgene_id": "49313", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -125044,7 +157627,6 @@ "plasmid_name": "IDG_CACNG5_OE_1", "sequence-type": "addgene-full", "addgene_id": "161687", - "references": [], "kit": null, "file": "data/addgene_plasmids/161687.addgene-full.gb" }, @@ -125053,7 +157635,10 @@ "plasmid_name": "pLenti X1 Puro DEST (694-6)", "sequence-type": "addgene-full", "addgene_id": "17297", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17297.addgene-full.gb" }, @@ -125062,7 +157647,10 @@ "plasmid_name": "pDL188", "sequence-type": "addgene-full", "addgene_id": "175930", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175930.addgene-full.gb" }, @@ -125071,7 +157659,10 @@ "plasmid_name": "LVXN-Neo-NSD2", "sequence-type": "addgene-full", "addgene_id": "86010", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2777", + "https://www.ncbi.nlm.nih.gov/pubmed/24076604" + ], "kit": null, "file": "data/addgene_plasmids/86010.addgene-full.gb" }, @@ -125080,7 +157671,6 @@ "plasmid_name": "EFR Y877F (17)", "sequence-type": "addgene-full", "addgene_id": "102415", - "references": [], "kit": null, "file": "data/addgene_plasmids/102415.addgene-full.gb" }, @@ -125089,7 +157679,10 @@ "plasmid_name": "pSGE_773_zen_VRE_dCP", "sequence-type": "depositor-full", "addgene_id": "71158", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71158.depositor-full.gb" }, @@ -125098,7 +157691,10 @@ "plasmid_name": "MSCV-P C-FlagHA HPV16-18 E7 Chimera A", "sequence-type": "addgene-full", "addgene_id": "191542", - "references": [], + "references": [ + "https://doi.org/10.1128/mbio.02033-22", + "https://www.ncbi.nlm.nih.gov/pubmed/36346242" + ], "kit": null, "file": "data/addgene_plasmids/191542.addgene-full.gb" }, @@ -125107,7 +157703,10 @@ "plasmid_name": "PTPRA_C723S-GFP fusion", "sequence-type": "addgene-full", "addgene_id": "139639", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139639.addgene-full.gb" }, @@ -125116,7 +157715,10 @@ "plasmid_name": "pDONR-221-P3-P4", "sequence-type": "addgene-full", "addgene_id": "186351", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186351.addgene-full.gb" }, @@ -125125,7 +157727,10 @@ "plasmid_name": "pDONR221 CARD8 ZUC", "sequence-type": "addgene-full", "addgene_id": "169964", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2021.04.024", + "https://www.ncbi.nlm.nih.gov/pubmed/34019797" + ], "kit": null, "file": "data/addgene_plasmids/169964.addgene-full.gb" }, @@ -125134,7 +157739,10 @@ "plasmid_name": "pSLIK TT 3xFLAG ID2 hygro", "sequence-type": "addgene-full", "addgene_id": "98394", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2017.10.027", + "https://www.ncbi.nlm.nih.gov/pubmed/29161592" + ], "kit": null, "file": "data/addgene_plasmids/98394.addgene-full.gb" }, @@ -125143,7 +157751,10 @@ "plasmid_name": "pCMV 3xFLAG-ATG3 allKR", "sequence-type": "addgene-full", "addgene_id": "129298", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.AC119.009977", + "https://www.ncbi.nlm.nih.gov/pubmed/31315929" + ], "kit": null, "file": "data/addgene_plasmids/129298.addgene-full.gb" }, @@ -125152,7 +157763,10 @@ "plasmid_name": "LF801: pMVP (L1-R5) cTnT promoter", "sequence-type": "addgene-full", "addgene_id": "121696", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121696.addgene-full.gb" }, @@ -125161,7 +157775,6 @@ "plasmid_name": "R777-E012 Hs.ARHGAP35-nostop", "sequence-type": "depositor-full", "addgene_id": "70296", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -125173,7 +157786,10 @@ "plasmid_name": "pDONR223_GPR137B_p.Y135N", "sequence-type": "addgene-full", "addgene_id": "82752", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82752.addgene-full.gb" }, @@ -125182,7 +157798,10 @@ "plasmid_name": "JDW 762 (pCS2-EGFP-hsKRAS4B-G12V)", "sequence-type": "addgene-full", "addgene_id": "156407", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316500", + "https://www.ncbi.nlm.nih.gov/pubmed/32552404" + ], "kit": null, "file": "data/addgene_plasmids/156407.addgene-full.gb" }, @@ -125191,7 +157810,10 @@ "plasmid_name": "MiniCoopR 2xU6:gRNA pten, mitfa:Cas9", "sequence-type": "addgene-full", "addgene_id": "118845", - "references": [], + "references": [ + "https://doi.org/10.1126/science.aau6509", + "https://www.ncbi.nlm.nih.gov/pubmed/30385465" + ], "kit": null, "file": "data/addgene_plasmids/118845.addgene-full.gb" }, @@ -125200,7 +157822,10 @@ "plasmid_name": "pHAGE-ERBB2-G919W", "sequence-type": "addgene-full", "addgene_id": "116334", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116334.addgene-full.gb" }, @@ -125209,7 +157834,10 @@ "plasmid_name": "p3E-HsNRF2 (NFE2L2)", "sequence-type": "addgene-full", "addgene_id": "194302", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "file": "data/addgene_plasmids/194302.addgene-full.gb" }, @@ -125218,7 +157846,10 @@ "plasmid_name": "pAC148-pCR8-dCas9VP96", "sequence-type": "depositor-full", "addgene_id": "48220", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/48220.depositor-full.gb" }, @@ -125227,7 +157858,10 @@ "plasmid_name": "pcDNA3.2/NS4A-2K", "sequence-type": "addgene-full", "addgene_id": "120820", - "references": [], + "references": [ + "https://doi.org/10.1002/eji.201847483", + "https://www.ncbi.nlm.nih.gov/pubmed/29572905" + ], "kit": null, "file": "data/addgene_plasmids/120820.addgene-full.gb" }, @@ -125236,7 +157870,10 @@ "plasmid_name": "p3E-rab32b", "sequence-type": "addgene-full", "addgene_id": "109690", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109690.addgene-full.gb" }, @@ -125245,7 +157882,10 @@ "plasmid_name": "pDONR221_MFSD5", "sequence-type": "addgene-full", "addgene_id": "131941", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131941.addgene-full.gb" }, @@ -125254,7 +157894,10 @@ "plasmid_name": "pEZY45", "sequence-type": "depositor-full", "addgene_id": "18704", - "references": [], + "references": [ + "https://doi.org/10.1002/biot.200700170", + "https://www.ncbi.nlm.nih.gov/pubmed/18064608" + ], "kit": null, "file": "data/addgene_plasmids/18704.depositor-full.gb" }, @@ -125263,7 +157906,10 @@ "plasmid_name": "p5E-mcs2", "sequence-type": "addgene-full", "addgene_id": "138362", - "references": [], + "references": [ + "https://doi.org/10.1161/CIRCRESAHA.119.316075", + "https://www.ncbi.nlm.nih.gov/pubmed/32065070" + ], "kit": null, "file": "data/addgene_plasmids/138362.addgene-full.gb" }, @@ -125272,7 +157918,10 @@ "plasmid_name": "pEBTet-SNAP-Cep76", "sequence-type": "addgene-full", "addgene_id": "136813", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136813.addgene-full.gb" }, @@ -125281,7 +157930,6 @@ "plasmid_name": "pCWXPG-UBI-PDX1", "sequence-type": "addgene-full", "addgene_id": "114304", - "references": [], "kit": null, "file": "data/addgene_plasmids/114304.addgene-full.gb" }, @@ -125290,7 +157938,10 @@ "plasmid_name": "pDONR223_NRAS_p.G12C", "sequence-type": "addgene-full", "addgene_id": "81660", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -125302,7 +157953,10 @@ "plasmid_name": "pME-Cav3", "sequence-type": "addgene-full", "addgene_id": "109570", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109570.addgene-full.gb" }, @@ -125311,7 +157965,10 @@ "plasmid_name": "TFORF2978", "sequence-type": "addgene-full", "addgene_id": "144454", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144454.addgene-full.gb" }, @@ -125320,7 +157977,10 @@ "plasmid_name": "p2R3a-VenusYFP-3AT", "sequence-type": "depositor-full", "addgene_id": "71269", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71269.depositor-full.gb" }, @@ -125329,7 +157989,10 @@ "plasmid_name": "pJW4.12", "sequence-type": "depositor-full", "addgene_id": "62868", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.04591", + "https://www.ncbi.nlm.nih.gov/pubmed/25535836" + ], "kit": null, "file": "data/addgene_plasmids/62868.depositor-full.gb" }, @@ -125338,7 +158001,10 @@ "plasmid_name": "pDONR223_ZNF454_p.P299L", "sequence-type": "addgene-full", "addgene_id": "81454", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -125350,7 +158016,10 @@ "plasmid_name": "pLX-EF1a_NKX2-1_Long", "sequence-type": "addgene-full", "addgene_id": "221483", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.10.26.563996", + "https://www.ncbi.nlm.nih.gov/pubmed/37994369" + ], "kit": null, "file": "data/addgene_plasmids/221483.addgene-full.gb" }, @@ -125359,7 +158028,6 @@ "plasmid_name": "R777-E258 Hs.RASSF3-nostop", "sequence-type": "depositor-full", "addgene_id": "70542", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -125371,7 +158039,10 @@ "plasmid_name": "pDONR221-MFSD3_STOP", "sequence-type": "addgene-full", "addgene_id": "161071", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161071.addgene-full.gb" }, @@ -125380,7 +158051,6 @@ "plasmid_name": "zcUAS:PSD95.FingR-GFP-ZFC(CCR5TC)-KRAB(A)", "sequence-type": "addgene-full", "addgene_id": "72638", - "references": [], "kit": null, "file": "data/addgene_plasmids/72638.addgene-full.gb" }, @@ -125389,7 +158059,10 @@ "plasmid_name": "GS2.1/EC", "sequence-type": "addgene-full", "addgene_id": "132568", - "references": [], + "references": [ + "https://doi.org/10.1111/ppl.13079", + "https://www.ncbi.nlm.nih.gov/pubmed/32096870" + ], "kit": null, "file": "data/addgene_plasmids/132568.addgene-full.gb" }, @@ -125398,7 +158071,10 @@ "plasmid_name": "pGGEV_5'_Linker", "sequence-type": "depositor-full", "addgene_id": "49291", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0076117", + "https://www.ncbi.nlm.nih.gov/pubmed/24116091" + ], "kit": { "name": "Golden GATEway Cloning Kit", "url": "https://www.addgene.org/1000000054/" @@ -125410,7 +158086,10 @@ "plasmid_name": "pGTQL1211YN", "sequence-type": "depositor-full", "addgene_id": "61704", - "references": [], + "references": [ + "https://doi.org/10.1111/j.1365-313X.2009.04048.x", + "https://www.ncbi.nlm.nih.gov/pubmed/19843313" + ], "kit": null, "file": "data/addgene_plasmids/61704.depositor-full.gb" }, @@ -125419,7 +158098,10 @@ "plasmid_name": "pcDNA3-FLAG -YWAA-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107381", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107381.addgene-full.gb" }, @@ -125428,7 +158110,9 @@ "plasmid_name": "pMpGWB431", "sequence-type": "depositor-full", "addgene_id": "68696", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68696.depositor-full.gb" }, @@ -125437,7 +158121,10 @@ "plasmid_name": "TFORF3184", "sequence-type": "addgene-full", "addgene_id": "144660", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144660.addgene-full.gb" }, @@ -125446,7 +158133,10 @@ "plasmid_name": "pDONR221_RHCG", "sequence-type": "addgene-full", "addgene_id": "131895", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131895.addgene-full.gb" }, @@ -125455,7 +158145,10 @@ "plasmid_name": "pLX304 ERG", "sequence-type": "addgene-full", "addgene_id": "118625", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.06.040", + "https://www.ncbi.nlm.nih.gov/pubmed/30078722" + ], "kit": null, "file": "data/addgene_plasmids/118625.addgene-full.gb" }, @@ -125464,7 +158157,10 @@ "plasmid_name": "TFORF3104", "sequence-type": "addgene-full", "addgene_id": "144580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144580.addgene-full.gb" }, @@ -125473,7 +158169,6 @@ "plasmid_name": "pHAGE pGK ERFlux (Bip-HaloTag7-mGFP-KDEL-STOP)", "sequence-type": "addgene-full", "addgene_id": "215013", - "references": [], "kit": null, "file": "data/addgene_plasmids/215013.addgene-full.gb" }, @@ -125482,7 +158177,10 @@ "plasmid_name": "pDONR223_IDH2_WT", "sequence-type": "addgene-full", "addgene_id": "81800", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -125494,7 +158192,10 @@ "plasmid_name": "pLenti-PGK-EGFP-ALDH1A1-Neo", "sequence-type": "addgene-full", "addgene_id": "189742", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-021-02949-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34934174" + ], "kit": null, "file": "data/addgene_plasmids/189742.addgene-full.gb" }, @@ -125503,7 +158204,10 @@ "plasmid_name": "pDONR221-SLC40A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161391", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161391.addgene-full.gb" }, @@ -125512,7 +158216,10 @@ "plasmid_name": "A1-LCD-6R", "sequence-type": "addgene-full", "addgene_id": "178665", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178665.addgene-full.gb" }, @@ -125521,7 +158228,10 @@ "plasmid_name": "pDONR-IAA2_no stop", "sequence-type": "depositor-full", "addgene_id": "83858", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.112.202184", + "https://www.ncbi.nlm.nih.gov/pubmed/22843664" + ], "kit": null, "file": "data/addgene_plasmids/83858.depositor-full.gb" }, @@ -125530,7 +158240,10 @@ "plasmid_name": "pDONR221-ASCL3", "sequence-type": "depositor-full", "addgene_id": "101515", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101515.depositor-full.gb" }, @@ -125539,7 +158252,10 @@ "plasmid_name": "pKL2351", "sequence-type": "addgene-full", "addgene_id": "199721", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiad231", + "https://www.ncbi.nlm.nih.gov/pubmed/37070560" + ], "kit": null, "file": "data/addgene_plasmids/199721.addgene-full.gb" }, @@ -125548,7 +158264,10 @@ "plasmid_name": "pEntry_HCoV-NL63-Spike", "sequence-type": "addgene-full", "addgene_id": "168929", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168929.addgene-full.gb" }, @@ -125557,7 +158276,6 @@ "plasmid_name": "R777-E289 Hs.RPS6KA1", "sequence-type": "addgene-full", "addgene_id": "70573", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -125569,7 +158287,10 @@ "plasmid_name": "pENTR-SLC66A1_STOP", "sequence-type": "addgene-full", "addgene_id": "221418", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/221418.addgene-full.gb" }, @@ -125578,7 +158299,10 @@ "plasmid_name": "KJ101: pMVP (R4-R3) osTir1", "sequence-type": "addgene-full", "addgene_id": "121742", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121742.addgene-full.gb" }, @@ -125587,7 +158311,10 @@ "plasmid_name": "pDONR223_EBNA1BP2_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82932", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82932.addgene-full.gb" }, @@ -125596,7 +158323,10 @@ "plasmid_name": "pDONR221 Puf6", "sequence-type": "depositor-full", "addgene_id": "63770", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63770.depositor-full.gb" }, @@ -125605,7 +158335,6 @@ "plasmid_name": "pAM-35s-Snrk2.3-YFPn-1", "sequence-type": "addgene-full", "addgene_id": "102391", - "references": [], "kit": null, "file": "data/addgene_plasmids/102391.addgene-full.gb" }, @@ -125614,7 +158343,10 @@ "plasmid_name": "pLenti CMV Hygro DHFR.dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134731", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "file": "data/addgene_plasmids/134731.addgene-full.gb" }, @@ -125623,7 +158355,10 @@ "plasmid_name": "pGWB501", "sequence-type": "depositor-full", "addgene_id": "74843", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74843.depositor-full.gb" }, @@ -125632,7 +158367,9 @@ "plasmid_name": "pME-Lifeact-mCherry-3xHA (JDW 1321)", "sequence-type": "addgene-full", "addgene_id": "224493", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224493.addgene-full.gb" }, @@ -125641,7 +158378,10 @@ "plasmid_name": "pDONR221-SLC7A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161103", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161103.addgene-full.gb" }, @@ -125650,7 +158390,10 @@ "plasmid_name": "pSGE_MC19_Trl-2xUAS_dCP", "sequence-type": "depositor-full", "addgene_id": "71170", - "references": [], + "references": [ + "https://doi.org/10.1038/nature15545", + "https://www.ncbi.nlm.nih.gov/pubmed/26550828" + ], "kit": null, "file": "data/addgene_plasmids/71170.depositor-full.gb" }, @@ -125659,7 +158402,10 @@ "plasmid_name": "pDONR223_BAP1_p.D75G", "sequence-type": "addgene-full", "addgene_id": "81526", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -125671,7 +158417,6 @@ "plasmid_name": "R777-E088 Hs.FGFR3-nostop", "sequence-type": "depositor-full", "addgene_id": "70372", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -125683,7 +158428,10 @@ "plasmid_name": "TFORF3236", "sequence-type": "addgene-full", "addgene_id": "144712", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144712.addgene-full.gb" }, @@ -125692,7 +158440,10 @@ "plasmid_name": "actc1b-mKate2-rab3ab", "sequence-type": "addgene-full", "addgene_id": "109636", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109636.addgene-full.gb" }, @@ -125701,7 +158452,10 @@ "plasmid_name": "pHAGE-FGFR4-M708I", "sequence-type": "addgene-full", "addgene_id": "116392", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116392.addgene-full.gb" }, @@ -125710,7 +158464,10 @@ "plasmid_name": "TFORF3313", "sequence-type": "addgene-full", "addgene_id": "144789", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144789.addgene-full.gb" }, @@ -125719,7 +158476,10 @@ "plasmid_name": "pGL3-Dusp6_2KBpromoter", "sequence-type": "depositor-full", "addgene_id": "32666", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2010.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/20346941" + ], "kit": null, "file": "data/addgene_plasmids/32666.depositor-full.gb" }, @@ -125728,7 +158488,10 @@ "plasmid_name": "pHAGE-EGFR-T363I", "sequence-type": "addgene-full", "addgene_id": "116309", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116309.addgene-full.gb" }, @@ -125737,7 +158500,10 @@ "plasmid_name": "pDEST26 Ago2 5A", "sequence-type": "depositor-full", "addgene_id": "60651", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2013.03.015", + "https://www.ncbi.nlm.nih.gov/pubmed/23603119" + ], "kit": null, "file": "data/addgene_plasmids/60651.depositor-full.gb" }, @@ -125746,7 +158512,10 @@ "plasmid_name": "pDONR223_ABCB9_p.R281L", "sequence-type": "addgene-full", "addgene_id": "82840", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82840.addgene-full.gb" }, @@ -125755,7 +158524,10 @@ "plasmid_name": "pDONR221-SLC26A4_STOP", "sequence-type": "addgene-full", "addgene_id": "161198", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161198.addgene-full.gb" }, @@ -125764,7 +158536,10 @@ "plasmid_name": "pLIX405-KANK1", "sequence-type": "addgene-full", "addgene_id": "121984", - "references": [], + "references": [ + "https://doi.org/10.1038/srep46392", + "https://www.ncbi.nlm.nih.gov/pubmed/28436992" + ], "kit": null, "file": "data/addgene_plasmids/121984.addgene-full.gb" }, @@ -125773,7 +158548,6 @@ "plasmid_name": "R777-E331 Hs.SPRY3", "sequence-type": "depositor-full", "addgene_id": "70615", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -125785,7 +158559,10 @@ "plasmid_name": "EMR2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98332", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98332.addgene-full.gb" }, @@ -125794,7 +158571,10 @@ "plasmid_name": "pDONR221-SLC32A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161278", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161278.addgene-full.gb" }, @@ -125803,7 +158583,10 @@ "plasmid_name": "pDONR221-kcnj20", "sequence-type": "addgene-full", "addgene_id": "173150", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173150.addgene-full.gb" }, @@ -125812,7 +158595,10 @@ "plasmid_name": "pMLS714", "sequence-type": "addgene-full", "addgene_id": "188886", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pgen.1009755", + "https://www.ncbi.nlm.nih.gov/pubmed/34748534" + ], "kit": null, "file": "data/addgene_plasmids/188886.addgene-full.gb" }, @@ -125821,7 +158607,10 @@ "plasmid_name": "pYPQ265O2", "sequence-type": "addgene-full", "addgene_id": "174002", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "file": "data/addgene_plasmids/174002.addgene-full.gb" }, @@ -125830,7 +158619,10 @@ "plasmid_name": "MAC-NRP1", "sequence-type": "addgene-full", "addgene_id": "158384", - "references": [], + "references": [ + "https://doi.org/10.1038/s41596-020-0365-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32778839" + ], "kit": null, "file": "data/addgene_plasmids/158384.addgene-full.gb" }, @@ -125839,7 +158631,10 @@ "plasmid_name": "pCM5.57", "sequence-type": "depositor-full", "addgene_id": "19378", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19378.depositor-full.gb" }, @@ -125848,7 +158643,10 @@ "plasmid_name": "TFORF2993", "sequence-type": "addgene-full", "addgene_id": "144469", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144469.addgene-full.gb" }, @@ -125857,7 +158655,10 @@ "plasmid_name": "IZ401: pMVP/Lenti/Neo-DEST", "sequence-type": "addgene-full", "addgene_id": "121850", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121850.addgene-full.gb" }, @@ -125866,7 +158667,10 @@ "plasmid_name": "pDONR223_TRAP1_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82994", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82994.addgene-full.gb" }, @@ -125875,7 +158679,10 @@ "plasmid_name": "pDONR223_CHD2_p.E412K", "sequence-type": "addgene-full", "addgene_id": "81469", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -125887,7 +158694,10 @@ "plasmid_name": "CMYA5/pDEST15", "sequence-type": "addgene-full", "addgene_id": "98106", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jpsychires.2019.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/30658136" + ], "kit": null, "file": "data/addgene_plasmids/98106.addgene-full.gb" }, @@ -125896,7 +158706,10 @@ "plasmid_name": "pENTR1A-NTAP-C (w324-1)", "sequence-type": "depositor-full", "addgene_id": "17404", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17404.depositor-full.gb" }, @@ -125905,7 +158718,10 @@ "plasmid_name": "pCM1.58", "sequence-type": "depositor-full", "addgene_id": "21380", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/21380.depositor-full.gb" }, @@ -125914,7 +158730,10 @@ "plasmid_name": "pAG306-GPD-AVT1 chr I", "sequence-type": "depositor-full", "addgene_id": "41898", - "references": [], + "references": [ + "https://doi.org/10.1038/nature11654", + "https://www.ncbi.nlm.nih.gov/pubmed/23172144" + ], "kit": null, "file": "data/addgene_plasmids/41898.depositor-full.gb" }, @@ -125923,7 +158742,10 @@ "plasmid_name": "pAG416GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14315", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -125935,7 +158757,6 @@ "plasmid_name": "pENTRY4_ PLDbeta1", "sequence-type": "addgene-full", "addgene_id": "126902", - "references": [], "kit": null, "file": "data/addgene_plasmids/126902.addgene-full.gb" }, @@ -125944,7 +158765,10 @@ "plasmid_name": "pCLX-UBI-GFP", "sequence-type": "depositor-full", "addgene_id": "27245", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-125-7_25", + "https://www.ncbi.nlm.nih.gov/pubmed/23097121" + ], "kit": null, "file": "data/addgene_plasmids/27245.depositor-full.gb" }, @@ -125953,7 +158777,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF9Bwu", "sequence-type": "addgene-full", "addgene_id": "149331", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149331.addgene-full.gb" }, @@ -125962,7 +158789,10 @@ "plasmid_name": "LOC5574680 Atrial natriuretic peptide receptor", "sequence-type": "addgene-full", "addgene_id": "115374", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115374.addgene-full.gb" }, @@ -125971,7 +158801,10 @@ "plasmid_name": "actc1b-mKate2-LactC2", "sequence-type": "addgene-full", "addgene_id": "109499", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109499.addgene-full.gb" }, @@ -125980,7 +158813,10 @@ "plasmid_name": "1025", "sequence-type": "addgene-full", "addgene_id": "160235", - "references": [], + "references": [ + "https://doi.org/10.1111/imb.12717", + "https://www.ncbi.nlm.nih.gov/pubmed/33963794" + ], "kit": null, "file": "data/addgene_plasmids/160235.addgene-full.gb" }, @@ -125989,7 +158825,10 @@ "plasmid_name": "pBBR5pemIK-GW", "sequence-type": "addgene-full", "addgene_id": "126556", - "references": [], + "references": [ + "https://doi.org/10.1094/PHYTO-02-16-0097-R", + "https://www.ncbi.nlm.nih.gov/pubmed/27088393" + ], "kit": null, "file": "data/addgene_plasmids/126556.addgene-full.gb" }, @@ -125998,7 +158837,10 @@ "plasmid_name": "TFORF3544", "sequence-type": "depositor-full", "addgene_id": "145020", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145020.depositor-full.gb" }, @@ -126007,7 +158849,10 @@ "plasmid_name": "pDONR223_CTCF_WT", "sequence-type": "addgene-full", "addgene_id": "81789", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -126019,7 +158864,10 @@ "plasmid_name": "E1b-GFP-Tol2-Gateway dre SE-zic2a R", "sequence-type": "addgene-full", "addgene_id": "89387", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.203679.115", + "https://www.ncbi.nlm.nih.gov/pubmed/27965291" + ], "kit": null, "file": "data/addgene_plasmids/89387.addgene-full.gb" }, @@ -126028,7 +158876,10 @@ "plasmid_name": "pBKWH", "sequence-type": "addgene-full", "addgene_id": "133898", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-06128-x", + "https://www.ncbi.nlm.nih.gov/pubmed/30217970" + ], "kit": null, "file": "data/addgene_plasmids/133898.addgene-full.gb" }, @@ -126037,7 +158888,10 @@ "plasmid_name": "pDONR223_MAPK6_p.D387N", "sequence-type": "addgene-full", "addgene_id": "81712", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -126049,7 +158903,10 @@ "plasmid_name": "pCWXPGR-pTF-DVL2deltaDIX", "sequence-type": "addgene-full", "addgene_id": "114276", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-01046-w", + "https://www.ncbi.nlm.nih.gov/pubmed/29079819" + ], "kit": null, "file": "data/addgene_plasmids/114276.addgene-full.gb" }, @@ -126058,7 +158915,10 @@ "plasmid_name": "pSLIK_hygro_3xflag_NRF2(RR)", "sequence-type": "addgene-full", "addgene_id": "136535", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aba4200", + "https://www.ncbi.nlm.nih.gov/pubmed/32291314" + ], "kit": null, "file": "data/addgene_plasmids/136535.addgene-full.gb" }, @@ -126067,7 +158927,10 @@ "plasmid_name": "WT A1-LCD +NLS", "sequence-type": "addgene-full", "addgene_id": "178658", - "references": [], + "references": [ + "https://doi.org/10.1038/s41557-021-00840-w", + "https://www.ncbi.nlm.nih.gov/pubmed/34931046" + ], "kit": null, "file": "data/addgene_plasmids/178658.addgene-full.gb" }, @@ -126076,7 +158939,10 @@ "plasmid_name": "pDONR221-SLC6A12_STOP", "sequence-type": "addgene-full", "addgene_id": "161337", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161337.addgene-full.gb" }, @@ -126085,7 +158951,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp5", "sequence-type": "addgene-full", "addgene_id": "168914", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168914.addgene-full.gb" }, @@ -126094,7 +158963,10 @@ "plasmid_name": "TFORF3050", "sequence-type": "addgene-full", "addgene_id": "144526", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144526.addgene-full.gb" }, @@ -126103,7 +158975,9 @@ "plasmid_name": "pDONR221 msNLRP3", "sequence-type": "addgene-full", "addgene_id": "218639", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.04.19.590338" + ], "kit": null, "file": "data/addgene_plasmids/218639.addgene-full.gb" }, @@ -126112,7 +158986,10 @@ "plasmid_name": "pAM105", "sequence-type": "addgene-full", "addgene_id": "226697", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.031", + "https://www.ncbi.nlm.nih.gov/pubmed/30929903" + ], "kit": null, "file": "data/addgene_plasmids/226697.addgene-full.gb" }, @@ -126121,7 +158998,10 @@ "plasmid_name": "pDONR 221-PHL2 (STOP)", "sequence-type": "addgene-full", "addgene_id": "118683", - "references": [], + "references": [ + "https://doi.org/10.3389/fpls.2017.00416", + "https://www.ncbi.nlm.nih.gov/pubmed/28400782" + ], "kit": null, "file": "data/addgene_plasmids/118683.addgene-full.gb" }, @@ -126130,7 +159010,10 @@ "plasmid_name": "p8193 MSCV-P C-FlagHA 18E7 R84S", "sequence-type": "addgene-full", "addgene_id": "163307", - "references": [], + "references": [ + "https://doi.org/10.1128/JVI.01024-20", + "https://www.ncbi.nlm.nih.gov/pubmed/32581101" + ], "kit": null, "file": "data/addgene_plasmids/163307.addgene-full.gb" }, @@ -126139,7 +159022,9 @@ "plasmid_name": "pDONR221-MARK4(v1)", "sequence-type": "addgene-full", "addgene_id": "166185", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166185.addgene-full.gb" }, @@ -126148,7 +159033,10 @@ "plasmid_name": "TFORF3496", "sequence-type": "addgene-full", "addgene_id": "144972", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144972.addgene-full.gb" }, @@ -126157,7 +159045,10 @@ "plasmid_name": "pTol2p2A--3mnx1:loxP-mTagBFP2-stop-loxP-mCherry-NS-MCS", "sequence-type": "depositor-full", "addgene_id": "78251", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -126169,7 +159060,10 @@ "plasmid_name": "pHAGE-EGFR-E746_T751delinsA", "sequence-type": "addgene-full", "addgene_id": "116246", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116246.addgene-full.gb" }, @@ -126178,7 +159072,10 @@ "plasmid_name": "pTol2-PcyA-IRES-HO1", "sequence-type": "addgene-full", "addgene_id": "131787", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.232", + "https://www.ncbi.nlm.nih.gov/pubmed/32745301" + ], "kit": null, "file": "data/addgene_plasmids/131787.addgene-full.gb" }, @@ -126187,7 +159084,10 @@ "plasmid_name": "pLenti6.3/V5-DEST-GFP", "sequence-type": "addgene-full", "addgene_id": "40125", - "references": [], + "references": [ + "https://doi.org/10.1093/neuonc/nos246", + "https://www.ncbi.nlm.nih.gov/pubmed/23074196" + ], "kit": null, "file": "data/addgene_plasmids/40125.addgene-full.gb" }, @@ -126196,7 +159096,6 @@ "plasmid_name": "pENTR-ABCF2_STOP", "sequence-type": "addgene-full", "addgene_id": "221425", - "references": [], "kit": null, "file": "data/addgene_plasmids/221425.addgene-full.gb" }, @@ -126205,7 +159104,6 @@ "plasmid_name": "R777-E308 Hs.SHC1-nostop", "sequence-type": "depositor-full", "addgene_id": "70592", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -126217,7 +159115,10 @@ "plasmid_name": "R717-X45-566: His6-MBP-tev-Hs.RAF1(136-188)", "sequence-type": "addgene-full", "addgene_id": "159698", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.005669", + "https://www.ncbi.nlm.nih.gov/pubmed/30559287" + ], "kit": null, "file": "data/addgene_plasmids/159698.addgene-full.gb" }, @@ -126226,7 +159127,10 @@ "plasmid_name": "pDONR223_AKT1S1_WT", "sequence-type": "addgene-full", "addgene_id": "82091", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -126238,7 +159142,10 @@ "plasmid_name": "pAG423GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14221", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -126250,7 +159157,10 @@ "plasmid_name": "hsp70:Stathmin1-mKate2", "sequence-type": "addgene-full", "addgene_id": "105969", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21206", + "https://www.ncbi.nlm.nih.gov/pubmed/26879757" + ], "kit": null, "file": "data/addgene_plasmids/105969.addgene-full.gb" }, @@ -126259,7 +159169,10 @@ "plasmid_name": "pAC150-KEIMA-REEP5", "sequence-type": "addgene-full", "addgene_id": "201928", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "file": "data/addgene_plasmids/201928.addgene-full.gb" }, @@ -126268,7 +159181,10 @@ "plasmid_name": "pLgw RFC1-V5-EcoDam", "sequence-type": "depositor-full", "addgene_id": "59205", - "references": [], + "references": [ + "https://doi.org/10.1101/gr.5391806", + "https://www.ncbi.nlm.nih.gov/pubmed/17038565" + ], "kit": null, "file": "data/addgene_plasmids/59205.depositor-full.gb" }, @@ -126277,7 +159193,10 @@ "plasmid_name": "pHAGE-TANC2__PRKCA", "sequence-type": "addgene-full", "addgene_id": "116838", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116838.addgene-full.gb" }, @@ -126286,7 +159205,10 @@ "plasmid_name": "pENTR221-NR1H2", "sequence-type": "addgene-full", "addgene_id": "79513", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79513.addgene-full.gb" }, @@ -126295,7 +159217,10 @@ "plasmid_name": "pCPP5741", "sequence-type": "addgene-full", "addgene_id": "128722", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2018.04.037", + "https://www.ncbi.nlm.nih.gov/pubmed/29742421" + ], "kit": null, "file": "data/addgene_plasmids/128722.addgene-full.gb" }, @@ -126304,7 +159229,10 @@ "plasmid_name": "R791-X15-636: His6-MBP-tev-Hs.NF1 DEF (1541-2818)", "sequence-type": "addgene-full", "addgene_id": "159578", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA119.010934", + "https://www.ncbi.nlm.nih.gov/pubmed/31836666" + ], "kit": null, "file": "data/addgene_plasmids/159578.addgene-full.gb" }, @@ -126313,7 +159241,6 @@ "plasmid_name": "pCM1.111", "sequence-type": "depositor-full", "addgene_id": "19598", - "references": [], "kit": null, "file": "data/addgene_plasmids/19598.depositor-full.gb" }, @@ -126322,7 +159249,10 @@ "plasmid_name": "PE_12: Plas_lac_tet_bD", "sequence-type": "addgene-full", "addgene_id": "113595", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/113595.addgene-full.gb" }, @@ -126331,7 +159261,10 @@ "plasmid_name": "pKB12 (pDEST-DHFR F[3] C-term, HygR)", "sequence-type": "addgene-full", "addgene_id": "210486", - "references": [], + "references": [ + "https://doi.org/10.1093/molbev/msad246", + "https://www.ncbi.nlm.nih.gov/pubmed/37979156" + ], "kit": null, "file": "data/addgene_plasmids/210486.addgene-full.gb" }, @@ -126340,7 +159273,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::RfA-venus", "sequence-type": "addgene-full", "addgene_id": "186409", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186409.addgene-full.gb" }, @@ -126349,7 +159285,10 @@ "plasmid_name": "pAcBac1-Ma-sfGFP 150TAG", "sequence-type": "addgene-full", "addgene_id": "197568", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.2c00639", + "https://www.ncbi.nlm.nih.gov/pubmed/36383641" + ], "kit": null, "file": "data/addgene_plasmids/197568.addgene-full.gb" }, @@ -126358,7 +159297,10 @@ "plasmid_name": "pHAGE-BCL2", "sequence-type": "addgene-full", "addgene_id": "116717", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116717.addgene-full.gb" }, @@ -126367,7 +159309,6 @@ "plasmid_name": "pENTR-R2L3-cGR-IRESpuro-pA", "sequence-type": "addgene-full", "addgene_id": "139538", - "references": [], "kit": null, "file": "data/addgene_plasmids/139538.addgene-full.gb" }, @@ -126376,7 +159317,10 @@ "plasmid_name": "pEXP(V5-APEX2-NES)", "sequence-type": "addgene-full", "addgene_id": "107596", - "references": [], + "references": [ + "https://doi.org/10.1038/s41592-018-0220-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30478324" + ], "kit": null, "file": "data/addgene_plasmids/107596.addgene-full.gb" }, @@ -126385,7 +159329,10 @@ "plasmid_name": "pME-QUASM1:GFPNLS-SV40pA", "sequence-type": "addgene-full", "addgene_id": "155116", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ydbio.2020.07.007", + "https://www.ncbi.nlm.nih.gov/pubmed/32697972" + ], "kit": null, "file": "data/addgene_plasmids/155116.addgene-full.gb" }, @@ -126394,7 +159341,10 @@ "plasmid_name": "pCAG/ATP8B1-HA", "sequence-type": "addgene-full", "addgene_id": "209209", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209209.addgene-full.gb" }, @@ -126403,7 +159353,10 @@ "plasmid_name": "TFORF3520", "sequence-type": "depositor-full", "addgene_id": "144996", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144996.depositor-full.gb" }, @@ -126412,7 +159365,10 @@ "plasmid_name": "tetO-ZFPM2", "sequence-type": "addgene-full", "addgene_id": "170707", - "references": [], + "references": [ + "https://doi.org/10.1016/j.yjmcc.2023.06.005", + "https://www.ncbi.nlm.nih.gov/pubmed/37421991" + ], "kit": null, "file": "data/addgene_plasmids/170707.addgene-full.gb" }, @@ -126421,7 +159377,10 @@ "plasmid_name": "pFRT-TODestFLAGHA_RBPMS_R38E", "sequence-type": "depositor-full", "addgene_id": "65665", - "references": [], + "references": [ + "https://doi.org/10.1017/S0033583515000207", + "https://www.ncbi.nlm.nih.gov/pubmed/26347403" + ], "kit": null, "file": "data/addgene_plasmids/65665.depositor-full.gb" }, @@ -126430,7 +159389,10 @@ "plasmid_name": "GFP-Ago4", "sequence-type": "addgene-full", "addgene_id": "21536", - "references": [], + "references": [ + "https://doi.org/10.1261/rna.1229409", + "https://www.ncbi.nlm.nih.gov/pubmed/19324964" + ], "kit": null, "file": "data/addgene_plasmids/21536.addgene-full.gb" }, @@ -126439,7 +159401,10 @@ "plasmid_name": "pENTR4_G3BP2", "sequence-type": "addgene-full", "addgene_id": "127105", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2019.12.024", + "https://www.ncbi.nlm.nih.gov/pubmed/31981475" + ], "kit": null, "file": "data/addgene_plasmids/127105.addgene-full.gb" }, @@ -126448,7 +159413,6 @@ "plasmid_name": "IDG_SCNN1D_OE_1", "sequence-type": "addgene-full", "addgene_id": "161666", - "references": [], "kit": null, "file": "data/addgene_plasmids/161666.addgene-full.gb" }, @@ -126457,7 +159421,10 @@ "plasmid_name": "pINDUCER-21-LCOR-P2A-HOXA9-T2A-HOXA5", "sequence-type": "addgene-full", "addgene_id": "97044", - "references": [], + "references": [ + "https://doi.org/10.1038/nature22370", + "https://www.ncbi.nlm.nih.gov/pubmed/28514439" + ], "kit": null, "file": "data/addgene_plasmids/97044.addgene-full.gb" }, @@ -126466,7 +159433,10 @@ "plasmid_name": "TRAIP-SFB", "sequence-type": "addgene-full", "addgene_id": "101769", - "references": [], + "references": [ + "https://doi.org/10.1038/celldisc.2016.16", + "https://www.ncbi.nlm.nih.gov/pubmed/27462463" + ], "kit": null, "file": "data/addgene_plasmids/101769.addgene-full.gb" }, @@ -126475,7 +159445,6 @@ "plasmid_name": "MECP2 - P217L in pENTR", "sequence-type": "addgene-full", "addgene_id": "216599", - "references": [], "kit": null, "file": "data/addgene_plasmids/216599.addgene-full.gb" }, @@ -126484,7 +159453,10 @@ "plasmid_name": "pDONR221-UCP2_STOP", "sequence-type": "addgene-full", "addgene_id": "161452", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161452.addgene-full.gb" }, @@ -126493,7 +159465,10 @@ "plasmid_name": "p5EsheE1", "sequence-type": "addgene-full", "addgene_id": "90116", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90116.addgene-full.gb" }, @@ -126502,7 +159477,10 @@ "plasmid_name": "pLenti-CMV-DNAJC5 (L115R)", "sequence-type": "addgene-full", "addgene_id": "205728", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.85837", + "https://www.ncbi.nlm.nih.gov/pubmed/36626307" + ], "kit": null, "file": "data/addgene_plasmids/205728.addgene-full.gb" }, @@ -126511,7 +159489,10 @@ "plasmid_name": "pDEST17-Ctdnep1_C-ter", "sequence-type": "addgene-full", "addgene_id": "196525", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2021.01.007", + "https://www.ncbi.nlm.nih.gov/pubmed/33567288" + ], "kit": null, "file": "data/addgene_plasmids/196525.addgene-full.gb" }, @@ -126520,7 +159501,9 @@ "plasmid_name": "pMpGWB217", "sequence-type": "depositor-full", "addgene_id": "68608", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68608.depositor-full.gb" }, @@ -126529,7 +159512,10 @@ "plasmid_name": "pGL4_EGR1p-BC1485-luc2", "sequence-type": "addgene-full", "addgene_id": "214649", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214649.addgene-full.gb" }, @@ -126538,7 +159524,10 @@ "plasmid_name": "MAC_N_LHX6", "sequence-type": "addgene-full", "addgene_id": "167779", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167779.addgene-full.gb" }, @@ -126547,7 +159536,10 @@ "plasmid_name": "pAC8_PH-10His-Nter-GWs-Lox (VE5588)", "sequence-type": "addgene-full", "addgene_id": "161806", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-021-04715-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35132103" + ], "kit": null, "file": "data/addgene_plasmids/161806.addgene-full.gb" }, @@ -126556,7 +159548,10 @@ "plasmid_name": "pDONR223_ACTG1_p.K61E", "sequence-type": "addgene-full", "addgene_id": "81397", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -126568,7 +159563,10 @@ "plasmid_name": "pCFJ2453 - [1-2] ENTR - Fluor - ce-mCardinal(900bp PATCs, NLS, no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159863", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159863.addgene-full.gb" }, @@ -126577,7 +159575,10 @@ "plasmid_name": "pHAGE-PIK3CA-P471L", "sequence-type": "addgene-full", "addgene_id": "116523", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116523.addgene-full.gb" }, @@ -126586,7 +159587,10 @@ "plasmid_name": "pDONR221_SLC5A9", "sequence-type": "addgene-full", "addgene_id": "132230", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132230.addgene-full.gb" }, @@ -126595,7 +159599,10 @@ "plasmid_name": "pENTR4 PARP2 E614Q", "sequence-type": "addgene-full", "addgene_id": "192545", - "references": [], + "references": [ + "https://doi.org/10.1093/plcell/koac261", + "https://www.ncbi.nlm.nih.gov/pubmed/35980152" + ], "kit": null, "file": "data/addgene_plasmids/192545.addgene-full.gb" }, @@ -126604,7 +159611,10 @@ "plasmid_name": "pDONR223_MAPK1_WT", "sequence-type": "addgene-full", "addgene_id": "82145", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82145.addgene-full.gb" }, @@ -126613,7 +159623,10 @@ "plasmid_name": "MRAP_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176937", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176937.addgene-full.gb" }, @@ -126622,7 +159635,10 @@ "plasmid_name": "pLenti-jAspSnFR3-mRuby3", "sequence-type": "addgene-full", "addgene_id": "203498", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "file": "data/addgene_plasmids/203498.addgene-full.gb" }, @@ -126631,7 +159647,10 @@ "plasmid_name": "PHAGE-P CMVt N-HA hE6-AP I (C21Y)", "sequence-type": "addgene-full", "addgene_id": "119304", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.RA118.004653", + "https://www.ncbi.nlm.nih.gov/pubmed/30257870" + ], "kit": null, "file": "data/addgene_plasmids/119304.addgene-full.gb" }, @@ -126640,7 +159659,10 @@ "plasmid_name": "pmCellFree_KA1 ZIKV E", "sequence-type": "addgene-full", "addgene_id": "145341", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145341.addgene-full.gb" }, @@ -126649,7 +159671,10 @@ "plasmid_name": "C417-E03: attB4-polyhedrinp>His6-GST-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162934", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -126661,7 +159686,10 @@ "plasmid_name": "pDONR221-SLC26A2_STOP", "sequence-type": "depositor-full", "addgene_id": "161174", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161174.depositor-full.gb" }, @@ -126670,7 +159698,10 @@ "plasmid_name": "pHAGE-RAF1-Q422R", "sequence-type": "addgene-full", "addgene_id": "116658", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116658.addgene-full.gb" }, @@ -126679,7 +159710,10 @@ "plasmid_name": "pPB-cT3G-cERP2-ATF4", "sequence-type": "addgene-full", "addgene_id": "192911", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192911.addgene-full.gb" }, @@ -126688,7 +159722,10 @@ "plasmid_name": "AAEL017410 MIP R", "sequence-type": "addgene-full", "addgene_id": "115411", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115411.addgene-full.gb" }, @@ -126697,7 +159734,10 @@ "plasmid_name": "pENTR-R4R3-mEGFP-N", "sequence-type": "depositor-full", "addgene_id": "113746", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.168", + "https://www.ncbi.nlm.nih.gov/pubmed/31523744" + ], "kit": { "name": "CRISPR-Cas9 Gateway System for Physcomitrella patens", "url": "https://www.addgene.org/1000000151/" @@ -126709,7 +159749,10 @@ "plasmid_name": "mg319", "sequence-type": "depositor-full", "addgene_id": "73367", - "references": [], + "references": [ + "https://doi.org/10.1038/ncb2915", + "https://www.ncbi.nlm.nih.gov/pubmed/24561618" + ], "kit": null, "file": "data/addgene_plasmids/73367.depositor-full.gb" }, @@ -126718,7 +159761,10 @@ "plasmid_name": "pDONR207 SARS-CoV-2 NSP3 Cys857Ala_nostop", "sequence-type": "addgene-full", "addgene_id": "154029", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154029.addgene-full.gb" }, @@ -126727,7 +159773,6 @@ "plasmid_name": "R777-E192 Hs.PRKAA1-nostop", "sequence-type": "depositor-full", "addgene_id": "70476", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -126739,7 +159784,10 @@ "plasmid_name": "dTAG NLRP1 P1214R", "sequence-type": "addgene-full", "addgene_id": "166826", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-021-03350-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33731932" + ], "kit": null, "file": "data/addgene_plasmids/166826.addgene-full.gb" }, @@ -126748,7 +159796,10 @@ "plasmid_name": "pSC5", "sequence-type": "addgene-full", "addgene_id": "104779", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.12857", + "https://www.ncbi.nlm.nih.gov/pubmed/29087011" + ], "kit": null, "file": "data/addgene_plasmids/104779.addgene-full.gb" }, @@ -126757,7 +159808,10 @@ "plasmid_name": "pGC22", "sequence-type": "depositor-full", "addgene_id": "19681", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.108.090274", + "https://www.ncbi.nlm.nih.gov/pubmed/18723890" + ], "kit": null, "file": "data/addgene_plasmids/19681.depositor-full.gb" }, @@ -126766,7 +159820,10 @@ "plasmid_name": "pMuLE ENTR 7SK-miR-30 R4-R3", "sequence-type": "depositor-full", "addgene_id": "62121", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62121.depositor-full.gb" }, @@ -126775,7 +159832,10 @@ "plasmid_name": "pHAGE-PDGFRA-R558C", "sequence-type": "addgene-full", "addgene_id": "116451", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116451.addgene-full.gb" }, @@ -126784,7 +159844,10 @@ "plasmid_name": "pDONR221_SLC25A21", "sequence-type": "addgene-full", "addgene_id": "132039", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132039.addgene-full.gb" }, @@ -126793,7 +159856,10 @@ "plasmid_name": "2HA-pDEST-C", "sequence-type": "addgene-full", "addgene_id": "118374", - "references": [], + "references": [ + "https://doi.org/10.1242/jcs.226852", + "https://www.ncbi.nlm.nih.gov/pubmed/30890647" + ], "kit": null, "file": "data/addgene_plasmids/118374.addgene-full.gb" }, @@ -126802,7 +159868,10 @@ "plasmid_name": "pYPQ141-ZmUbi-RZ-Bth", "sequence-type": "addgene-full", "addgene_id": "129686", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-0614-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32170285" + ], "kit": null, "file": "data/addgene_plasmids/129686.addgene-full.gb" }, @@ -126811,7 +159880,10 @@ "plasmid_name": "R989-X13-566: His6-MBP-tev-G-Hs.KRAS4b(1-169) Q61R", "sequence-type": "addgene-full", "addgene_id": "159545", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159545.addgene-full.gb" }, @@ -126820,7 +159892,10 @@ "plasmid_name": "pYPQ166-SpRY", "sequence-type": "addgene-full", "addgene_id": "161520", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-020-00827-4", + "https://www.ncbi.nlm.nih.gov/pubmed/33398158" + ], "kit": null, "file": "data/addgene_plasmids/161520.addgene-full.gb" }, @@ -126829,7 +159904,10 @@ "plasmid_name": "MAC_C_TOM20", "sequence-type": "addgene-full", "addgene_id": "111678", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111678.addgene-full.gb" }, @@ -126838,7 +159916,6 @@ "plasmid_name": "p667-UBC-ALPK2-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198009", - "references": [], "kit": null, "file": "data/addgene_plasmids/198009.addgene-full.gb" }, @@ -126847,7 +159924,10 @@ "plasmid_name": "pLenti6.3/TO/CD9-GFP", "sequence-type": "addgene-full", "addgene_id": "104402", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymthe.2017.11.008", + "https://www.ncbi.nlm.nih.gov/pubmed/29221804" + ], "kit": null, "file": "data/addgene_plasmids/104402.addgene-full.gb" }, @@ -126856,7 +159936,10 @@ "plasmid_name": "pAG305GPD-ccdB", "sequence-type": "depositor-full", "addgene_id": "14138", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -126868,7 +159951,6 @@ "plasmid_name": "pDONR221-TMPRSS11D", "sequence-type": "addgene-full", "addgene_id": "158447", - "references": [], "kit": null, "file": "data/addgene_plasmids/158447.addgene-full.gb" }, @@ -126877,7 +159959,10 @@ "plasmid_name": "THOC3", "sequence-type": "addgene-full", "addgene_id": "156082", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/156082.addgene-full.gb" }, @@ -126886,7 +159971,9 @@ "plasmid_name": "pCK123 pDESTattB_exorh:mCerulean", "sequence-type": "addgene-full", "addgene_id": "213512", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.12.08.570868" + ], "kit": null, "file": "data/addgene_plasmids/213512.addgene-full.gb" }, @@ -126895,7 +159982,10 @@ "plasmid_name": "pMx/ATP10D-HA", "sequence-type": "addgene-full", "addgene_id": "209234", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M115.655191", + "https://www.ncbi.nlm.nih.gov/pubmed/25947375" + ], "kit": null, "file": "data/addgene_plasmids/209234.addgene-full.gb" }, @@ -126904,7 +159994,10 @@ "plasmid_name": "pTW094", "sequence-type": "addgene-full", "addgene_id": "115937", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115937.addgene-full.gb" }, @@ -126913,7 +160006,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-wt", "sequence-type": "depositor-full", "addgene_id": "46695", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46695.depositor-full.gb" }, @@ -126922,7 +160018,10 @@ "plasmid_name": "pLVpuro-CMV-N-3xFLAG", "sequence-type": "addgene-full", "addgene_id": "123223", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123223.addgene-full.gb" }, @@ -126931,7 +160030,9 @@ "plasmid_name": "p3E tdTomato", "sequence-type": "addgene-full", "addgene_id": "135210", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26445458" + ], "kit": null, "file": "data/addgene_plasmids/135210.addgene-full.gb" }, @@ -126940,7 +160041,10 @@ "plasmid_name": "pRU323", "sequence-type": "addgene-full", "addgene_id": "167690", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167690.addgene-full.gb" }, @@ -126949,7 +160053,10 @@ "plasmid_name": "pDONR221_SLCO1A2", "sequence-type": "addgene-full", "addgene_id": "132176", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132176.addgene-full.gb" }, @@ -126958,7 +160065,10 @@ "plasmid_name": "pDONR221-kcnk18", "sequence-type": "addgene-full", "addgene_id": "209000", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.690", + "https://www.ncbi.nlm.nih.gov/pubmed/38270285" + ], "kit": null, "file": "data/addgene_plasmids/209000.addgene-full.gb" }, @@ -126967,7 +160077,9 @@ "plasmid_name": "Shim_AspRS_TP_GFP_pK7FWG2", "sequence-type": "addgene-full", "addgene_id": "202647", - "references": [], + "references": [ + "https://doi.org/10.1101/2023.08.01.551541" + ], "kit": null, "file": "data/addgene_plasmids/202647.addgene-full.gb" }, @@ -126976,7 +160088,10 @@ "plasmid_name": "pYZ959", "sequence-type": "addgene-full", "addgene_id": "192603", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkad491", + "https://www.ncbi.nlm.nih.gov/pubmed/37326023" + ], "kit": null, "file": "data/addgene_plasmids/192603.addgene-full.gb" }, @@ -126985,7 +160100,10 @@ "plasmid_name": "pDONR223_CREB1_WT", "sequence-type": "addgene-full", "addgene_id": "82203", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82203.addgene-full.gb" }, @@ -126994,7 +160112,6 @@ "plasmid_name": "R777-E154 Hs.PAK4-nostop", "sequence-type": "depositor-full", "addgene_id": "70438", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -127006,7 +160123,10 @@ "plasmid_name": "pDONR221-Hyg", "sequence-type": "depositor-full", "addgene_id": "48994", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2180-9-90", + "https://www.ncbi.nlm.nih.gov/pubmed/19432966" + ], "kit": null, "file": "data/addgene_plasmids/48994.depositor-full.gb" }, @@ -127015,7 +160135,10 @@ "plasmid_name": "GNAS_pLENTI-CAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "176991", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176991.addgene-full.gb" }, @@ -127024,7 +160147,10 @@ "plasmid_name": "pAG306GPD-ccdB-HA", "sequence-type": "addgene-full", "addgene_id": "14236", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -127036,7 +160162,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP7", "sequence-type": "addgene-full", "addgene_id": "169381", - "references": [], "kit": null, "file": "data/addgene_plasmids/169381.addgene-full.gb" }, @@ -127045,7 +160170,10 @@ "plasmid_name": "MAC_C_DUX4", "sequence-type": "addgene-full", "addgene_id": "187799", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187799.addgene-full.gb" }, @@ -127054,7 +160182,10 @@ "plasmid_name": "pDONR221-TMEM241", "sequence-type": "addgene-full", "addgene_id": "132296", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132296.addgene-full.gb" }, @@ -127063,7 +160194,10 @@ "plasmid_name": "pAG416GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14411", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -127075,7 +160209,10 @@ "plasmid_name": "pENTR D-TOPO-C3_33", "sequence-type": "addgene-full", "addgene_id": "60275", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60275.addgene-full.gb" }, @@ -127084,7 +160221,10 @@ "plasmid_name": "pHAGE-PIK3R1-D560G", "sequence-type": "addgene-full", "addgene_id": "116585", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116585.addgene-full.gb" }, @@ -127093,7 +160233,10 @@ "plasmid_name": "pAM PAT-ProCPC GW", "sequence-type": "depositor-full", "addgene_id": "79757", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.094698", + "https://www.ncbi.nlm.nih.gov/pubmed/23900543" + ], "kit": null, "file": "data/addgene_plasmids/79757.depositor-full.gb" }, @@ -127102,7 +160245,6 @@ "plasmid_name": "pMH-EBFP", "sequence-type": "addgene-full", "addgene_id": "161714", - "references": [], "kit": null, "file": "data/addgene_plasmids/161714.addgene-full.gb" }, @@ -127111,7 +160253,10 @@ "plasmid_name": "pAG424GPD-ccdB-ECFP", "sequence-type": "depositor-full", "addgene_id": "14176", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -127123,7 +160268,10 @@ "plasmid_name": "pDONR223_OR2T33_p.L60P", "sequence-type": "addgene-full", "addgene_id": "81331", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -127135,7 +160283,10 @@ "plasmid_name": "pDONR223_RAC1_p.Q61L", "sequence-type": "addgene-full", "addgene_id": "82178", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82178.addgene-full.gb" }, @@ -127144,7 +160295,10 @@ "plasmid_name": "C234-E05: attB2r-V5-attB3", "sequence-type": "addgene-full", "addgene_id": "162909", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -127156,7 +160310,10 @@ "plasmid_name": "pKI-cjPLP1e2-A39T", "sequence-type": "addgene-full", "addgene_id": "129752", - "references": [], + "references": [ + "https://doi.org/10.1038/s41598-018-37990-w", + "https://www.ncbi.nlm.nih.gov/pubmed/30728412" + ], "kit": null, "file": "data/addgene_plasmids/129752.addgene-full.gb" }, @@ -127165,7 +160322,10 @@ "plasmid_name": "pDONR223_MAPK14_WT", "sequence-type": "addgene-full", "addgene_id": "82298", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82298.addgene-full.gb" }, @@ -127174,7 +160334,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-PAK6_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170595", - "references": [], "kit": null, "file": "data/addgene_plasmids/170595.addgene-full.gb" }, @@ -127183,7 +160342,10 @@ "plasmid_name": "pHAGE-RET-E623K", "sequence-type": "addgene-full", "addgene_id": "116665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116665.addgene-full.gb" }, @@ -127192,7 +160354,10 @@ "plasmid_name": "SITS-ccdb", "sequence-type": "addgene-full", "addgene_id": "141067", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/141067.addgene-full.gb" }, @@ -127201,7 +160366,6 @@ "plasmid_name": "pAG416GALL-HAV_3C", "sequence-type": "addgene-full", "addgene_id": "203481", - "references": [], "kit": null, "file": "data/addgene_plasmids/203481.addgene-full.gb" }, @@ -127210,7 +160374,10 @@ "plasmid_name": "pDest-663 (attR4-attR2)", "sequence-type": "addgene-full", "addgene_id": "161884", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -127222,7 +160389,10 @@ "plasmid_name": "pDONR223_REG3A_p.P109S", "sequence-type": "addgene-full", "addgene_id": "81315", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -127234,7 +160404,10 @@ "plasmid_name": "pENTR D-TOPO-C2_10", "sequence-type": "depositor-full", "addgene_id": "60250", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60250.depositor-full.gb" }, @@ -127243,7 +160416,10 @@ "plasmid_name": "pDONR221_SLC5A12", "sequence-type": "addgene-full", "addgene_id": "132229", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132229.addgene-full.gb" }, @@ -127252,7 +160428,10 @@ "plasmid_name": "pDONR223-PDK1", "sequence-type": "addgene-full", "addgene_id": "23804", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -127264,7 +160443,10 @@ "plasmid_name": "pDONR223-ZNF770", "sequence-type": "addgene-full", "addgene_id": "88562", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88562.addgene-full.gb" }, @@ -127273,7 +160455,10 @@ "plasmid_name": "pENTR-L3-Cas9-EGFP-L2", "sequence-type": "addgene-full", "addgene_id": "141043", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141043.addgene-full.gb" }, @@ -127282,7 +160467,10 @@ "plasmid_name": "pHAGE-PTPN11-E69K", "sequence-type": "addgene-full", "addgene_id": "116641", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116641.addgene-full.gb" }, @@ -127291,7 +160479,10 @@ "plasmid_name": "AAEL009024 PDF R", "sequence-type": "addgene-full", "addgene_id": "115408", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.12.004", + "https://www.ncbi.nlm.nih.gov/pubmed/30735632" + ], "kit": null, "file": "data/addgene_plasmids/115408.addgene-full.gb" }, @@ -127300,7 +160491,10 @@ "plasmid_name": "pPB-cT3G-cERP2-KLF4", "sequence-type": "addgene-full", "addgene_id": "192908", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.83291", + "https://www.ncbi.nlm.nih.gov/pubmed/36803359" + ], "kit": null, "file": "data/addgene_plasmids/192908.addgene-full.gb" }, @@ -127309,7 +160503,10 @@ "plasmid_name": "pUC18-mini-Tn7T-Gm-GW", "sequence-type": "depositor-full", "addgene_id": "64961", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth765", + "https://www.ncbi.nlm.nih.gov/pubmed/15908923" + ], "kit": null, "file": "data/addgene_plasmids/64961.depositor-full.gb" }, @@ -127318,7 +160515,10 @@ "plasmid_name": "pCellFree_G06_ZIKV NS5", "sequence-type": "addgene-full", "addgene_id": "145358", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145358.addgene-full.gb" }, @@ -127327,7 +160527,10 @@ "plasmid_name": "pJEP228-Lenti-CMV-GFP-GluN2B-WPRE-pA", "sequence-type": "addgene-full", "addgene_id": "84277", - "references": [], + "references": [ + "https://doi.org/10.1186/s13041-015-0100-7", + "https://www.ncbi.nlm.nih.gov/pubmed/25887710" + ], "kit": null, "file": "data/addgene_plasmids/84277.addgene-full.gb" }, @@ -127336,7 +160539,10 @@ "plasmid_name": "pDL63", "sequence-type": "addgene-full", "addgene_id": "175887", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175887.addgene-full.gb" }, @@ -127345,7 +160551,10 @@ "plasmid_name": "pDONR223_PRKCE_WT", "sequence-type": "addgene-full", "addgene_id": "82227", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82227.addgene-full.gb" }, @@ -127354,7 +160563,10 @@ "plasmid_name": "pGL4_EGR1p-BC1486-luc2", "sequence-type": "addgene-full", "addgene_id": "214650", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214650.addgene-full.gb" }, @@ -127363,7 +160575,10 @@ "plasmid_name": "pENTR223-BGLF3.5", "sequence-type": "addgene-full", "addgene_id": "195775", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195775.addgene-full.gb" }, @@ -127372,7 +160587,6 @@ "plasmid_name": "pBPX_C1", "sequence-type": "depositor-full", "addgene_id": "33298", - "references": [], "kit": null, "file": "data/addgene_plasmids/33298.depositor-full.gb" }, @@ -127381,7 +160595,10 @@ "plasmid_name": "Flag-HA-OTUB2", "sequence-type": "addgene-full", "addgene_id": "22552", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2009.04.042", + "https://www.ncbi.nlm.nih.gov/pubmed/19615732" + ], "kit": null, "file": "data/addgene_plasmids/22552.addgene-full.gb" }, @@ -127390,7 +160607,10 @@ "plasmid_name": "pME-ReaChR-citrine", "sequence-type": "addgene-full", "addgene_id": "169045", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2020.05.009", + "https://www.ncbi.nlm.nih.gov/pubmed/32516597" + ], "kit": null, "file": "data/addgene_plasmids/169045.addgene-full.gb" }, @@ -127399,7 +160619,10 @@ "plasmid_name": "pDONR221_SLC26A7", "sequence-type": "addgene-full", "addgene_id": "132152", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132152.addgene-full.gb" }, @@ -127408,7 +160631,10 @@ "plasmid_name": "pWS485", "sequence-type": "addgene-full", "addgene_id": "123033", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123033.addgene-full.gb" }, @@ -127417,7 +160643,6 @@ "plasmid_name": "DDX3X - E388G in pENTR", "sequence-type": "addgene-full", "addgene_id": "216580", - "references": [], "kit": null, "file": "data/addgene_plasmids/216580.addgene-full.gb" }, @@ -127426,7 +160651,10 @@ "plasmid_name": "pMH-SFB-DYRK1A", "sequence-type": "addgene-full", "addgene_id": "101770", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkae574", + "https://www.ncbi.nlm.nih.gov/pubmed/38966995" + ], "kit": null, "file": "data/addgene_plasmids/101770.addgene-full.gb" }, @@ -127435,7 +160663,10 @@ "plasmid_name": "pcDNA3.1 NL-BCL2L1", "sequence-type": "addgene-full", "addgene_id": "113458", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.20178071", + "https://www.ncbi.nlm.nih.gov/pubmed/29997244" + ], "kit": null, "file": "data/addgene_plasmids/113458.addgene-full.gb" }, @@ -127444,7 +160675,10 @@ "plasmid_name": "pEX-YFP-STIM1-deltaK", "sequence-type": "depositor-full", "addgene_id": "18861", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702866104", + "https://www.ncbi.nlm.nih.gov/pubmed/17517596" + ], "kit": null, "file": "data/addgene_plasmids/18861.depositor-full.gb" }, @@ -127453,7 +160687,10 @@ "plasmid_name": "pLenti-PGK-RAP2A-N17-puro", "sequence-type": "addgene-full", "addgene_id": "156172", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-26296-7", + "https://www.ncbi.nlm.nih.gov/pubmed/34650052" + ], "kit": null, "file": "data/addgene_plasmids/156172.addgene-full.gb" }, @@ -127462,7 +160699,10 @@ "plasmid_name": "pDEST-DHFR F[3]-N (LEU2)", "sequence-type": "addgene-full", "addgene_id": "177798", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac045", + "https://www.ncbi.nlm.nih.gov/pubmed/35137167" + ], "kit": null, "file": "data/addgene_plasmids/177798.addgene-full.gb" }, @@ -127471,7 +160711,10 @@ "plasmid_name": "pHAGE TRE dCas9", "sequence-type": "addgene-full", "addgene_id": "50915", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.103341", + "https://www.ncbi.nlm.nih.gov/pubmed/24346702" + ], "kit": null, "file": "data/addgene_plasmids/50915.addgene-full.gb" }, @@ -127480,7 +160723,10 @@ "plasmid_name": "MAC_N_IRF1", "sequence-type": "addgene-full", "addgene_id": "167760", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167760.addgene-full.gb" }, @@ -127489,7 +160735,6 @@ "plasmid_name": "pLEX307-CTSB-puro", "sequence-type": "addgene-full", "addgene_id": "158463", - "references": [], "kit": null, "file": "data/addgene_plasmids/158463.addgene-full.gb" }, @@ -127498,7 +160743,10 @@ "plasmid_name": "pENTR2B-dCas9-KRAB", "sequence-type": "addgene-full", "addgene_id": "115547", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.03.076", + "https://www.ncbi.nlm.nih.gov/pubmed/30995470" + ], "kit": null, "file": "data/addgene_plasmids/115547.addgene-full.gb" }, @@ -127507,7 +160755,10 @@ "plasmid_name": "pDONR221_SLC35E2A", "sequence-type": "addgene-full", "addgene_id": "132086", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132086.addgene-full.gb" }, @@ -127516,7 +160767,10 @@ "plasmid_name": "pDEST-pSP172BSSPE-R3-ccdB/CmR-R5::RfA-HA", "sequence-type": "addgene-full", "addgene_id": "186410", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0000916", + "https://www.ncbi.nlm.nih.gov/pubmed/17878951" + ], "kit": null, "file": "data/addgene_plasmids/186410.addgene-full.gb" }, @@ -127525,7 +160779,10 @@ "plasmid_name": "pJH120_pE12_HyPep_emGFP", "sequence-type": "addgene-full", "addgene_id": "160406", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-24690-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34373460" + ], "kit": null, "file": "data/addgene_plasmids/160406.addgene-full.gb" }, @@ -127534,7 +160791,10 @@ "plasmid_name": "pAG425GAL-ccdB-TAP", "sequence-type": "depositor-full", "addgene_id": "14273", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -127546,7 +160806,10 @@ "plasmid_name": "pMuLE ENTR SFFV L1-R5", "sequence-type": "depositor-full", "addgene_id": "62097", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62097.depositor-full.gb" }, @@ -127555,7 +160818,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-RIOK1_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214464", - "references": [], "kit": null, "file": "data/addgene_plasmids/214464.addgene-full.gb" }, @@ -127564,7 +160826,10 @@ "plasmid_name": "pENTR2b-mScarlet", "sequence-type": "addgene-full", "addgene_id": "207961", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2304288120", + "https://www.ncbi.nlm.nih.gov/pubmed/37844244" + ], "kit": null, "file": "data/addgene_plasmids/207961.addgene-full.gb" }, @@ -127573,7 +160838,10 @@ "plasmid_name": "pCAG/ATP8B2-HA", "sequence-type": "addgene-full", "addgene_id": "209210", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M111.281006", + "https://www.ncbi.nlm.nih.gov/pubmed/21914794" + ], "kit": null, "file": "data/addgene_plasmids/209210.addgene-full.gb" }, @@ -127582,7 +160850,10 @@ "plasmid_name": "PE_19: Prhl_lac_eG", "sequence-type": "addgene-full", "addgene_id": "104872", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-017-02473-5", + "https://www.ncbi.nlm.nih.gov/pubmed/29302024" + ], "kit": null, "file": "data/addgene_plasmids/104872.addgene-full.gb" }, @@ -127591,7 +160862,9 @@ "plasmid_name": "pMpGWB223", "sequence-type": "depositor-full", "addgene_id": "68614", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68614.depositor-full.gb" }, @@ -127600,7 +160873,10 @@ "plasmid_name": "pDONR223 LC3B2 no-stop", "sequence-type": "addgene-full", "addgene_id": "123207", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123207.addgene-full.gb" }, @@ -127609,7 +160885,10 @@ "plasmid_name": "pDestTol2pA2-U6:gRNA", "sequence-type": "addgene-full", "addgene_id": "63157", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.01.032", + "https://www.ncbi.nlm.nih.gov/pubmed/25752963" + ], "kit": null, "file": "data/addgene_plasmids/63157.addgene-full.gb" }, @@ -127618,7 +160897,6 @@ "plasmid_name": "pSMPUW_6.4_M1-gateway-V5", "sequence-type": "addgene-full", "addgene_id": "128440", - "references": [], "kit": null, "file": "data/addgene_plasmids/128440.addgene-full.gb" }, @@ -127627,7 +160905,6 @@ "plasmid_name": "pDEST-R4R3-MC1DTA", "sequence-type": "addgene-full", "addgene_id": "139521", - "references": [], "kit": null, "file": "data/addgene_plasmids/139521.addgene-full.gb" }, @@ -127636,7 +160913,10 @@ "plasmid_name": "pAC150-TEX264-GFP", "sequence-type": "addgene-full", "addgene_id": "201931", - "references": [], + "references": [ + "https://doi.org/10.1038/s41556-024-01356-4", + "https://www.ncbi.nlm.nih.gov/pubmed/38429475" + ], "kit": null, "file": "data/addgene_plasmids/201931.addgene-full.gb" }, @@ -127645,7 +160925,10 @@ "plasmid_name": "pHAGE-PIK3CA-E453Q", "sequence-type": "addgene-full", "addgene_id": "116475", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116475.addgene-full.gb" }, @@ -127654,7 +160937,10 @@ "plasmid_name": "pDONR223-ZNF804B", "sequence-type": "addgene-full", "addgene_id": "88756", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88756.addgene-full.gb" }, @@ -127663,7 +160949,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF7B", "sequence-type": "addgene-full", "addgene_id": "141277", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/141277.addgene-full.gb" }, @@ -127672,7 +160961,10 @@ "plasmid_name": "pMpGWB106-MTS-Citrine", "sequence-type": "depositor-full", "addgene_id": "79135", - "references": [], + "references": [ + "https://doi.org/10.1111/pce.12085", + "https://www.ncbi.nlm.nih.gov/pubmed/23421791" + ], "kit": null, "file": "data/addgene_plasmids/79135.depositor-full.gb" }, @@ -127681,7 +160973,10 @@ "plasmid_name": "hsp70: mKate2 dynactin1-811", "sequence-type": "addgene-full", "addgene_id": "105970", - "references": [], + "references": [ + "https://doi.org/10.1038/srep21206", + "https://www.ncbi.nlm.nih.gov/pubmed/26879757" + ], "kit": null, "file": "data/addgene_plasmids/105970.addgene-full.gb" }, @@ -127690,7 +160985,10 @@ "plasmid_name": "pEntry_SARS-CoV-2-ORF14(9c)", "sequence-type": "depositor-full", "addgene_id": "168887", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168887.depositor-full.gb" }, @@ -127699,7 +160997,10 @@ "plasmid_name": "pDONR221-SLC24A5_STOP", "sequence-type": "depositor-full", "addgene_id": "161168", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161168.depositor-full.gb" }, @@ -127708,7 +161009,10 @@ "plasmid_name": "PB-CT3G-CERP2-MG-IRES2-mCherry", "sequence-type": "addgene-full", "addgene_id": "175507", - "references": [], + "references": [ + "https://doi.org/10.1016/j.crmeth.2021.100082", + "https://www.ncbi.nlm.nih.gov/pubmed/35474898" + ], "kit": null, "file": "data/addgene_plasmids/175507.addgene-full.gb" }, @@ -127717,7 +161021,10 @@ "plasmid_name": "R713-M88-303: CMV51p> Halotag-Hs.HRAS", "sequence-type": "addgene-full", "addgene_id": "159681", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47654", + "https://www.ncbi.nlm.nih.gov/pubmed/31958057" + ], "kit": null, "file": "data/addgene_plasmids/159681.addgene-full.gb" }, @@ -127726,7 +161033,10 @@ "plasmid_name": "pLENTI EF1alpha FLAG/HA-PALI1", "sequence-type": "addgene-full", "addgene_id": "114445", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.03.005", + "https://www.ncbi.nlm.nih.gov/pubmed/29628311" + ], "kit": null, "file": "data/addgene_plasmids/114445.addgene-full.gb" }, @@ -127735,7 +161045,10 @@ "plasmid_name": "pYPQ265N1", "sequence-type": "addgene-full", "addgene_id": "173998", - "references": [], + "references": [ + "https://doi.org/10.3389/fgeed.2021.756766", + "https://www.ncbi.nlm.nih.gov/pubmed/34713268" + ], "kit": null, "file": "data/addgene_plasmids/173998.addgene-full.gb" }, @@ -127744,7 +161057,10 @@ "plasmid_name": "R701-X53-566: His6-MBP-tev-Avi-Hs.KRAS4b(2-169) G12C", "sequence-type": "addgene-full", "addgene_id": "159561", - "references": [], + "references": [ + "https://doi.org/10.1038/srep15916", + "https://www.ncbi.nlm.nih.gov/pubmed/26522388" + ], "kit": null, "file": "data/addgene_plasmids/159561.addgene-full.gb" }, @@ -127753,7 +161069,10 @@ "plasmid_name": "pHAGE-STK19", "sequence-type": "addgene-full", "addgene_id": "116795", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116795.addgene-full.gb" }, @@ -127762,7 +161081,10 @@ "plasmid_name": "pHAGE-GTF2IRD1__ALK", "sequence-type": "addgene-full", "addgene_id": "116821", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116821.addgene-full.gb" }, @@ -127771,7 +161093,10 @@ "plasmid_name": "pDONR223_OR2G6_p.N42S", "sequence-type": "addgene-full", "addgene_id": "81328", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -127783,7 +161108,10 @@ "plasmid_name": "pDONR223_RPS6KB1_WT", "sequence-type": "addgene-full", "addgene_id": "82161", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82161.addgene-full.gb" }, @@ -127792,7 +161120,10 @@ "plasmid_name": "pDONR221_SLC44A2", "sequence-type": "addgene-full", "addgene_id": "132214", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132214.addgene-full.gb" }, @@ -127801,7 +161132,10 @@ "plasmid_name": "pDONR223-PIK4CB", "sequence-type": "addgene-full", "addgene_id": "23839", - "references": [], + "references": [ + "https://doi.org/10.1038/nature09627", + "https://www.ncbi.nlm.nih.gov/pubmed/21107320" + ], "kit": { "name": "Hahn/Root Labs - Human Kinase ORF Kit", "url": "https://www.addgene.org/1000000014/" @@ -127813,7 +161147,10 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NRF2-E79Q", "sequence-type": "addgene-full", "addgene_id": "207813", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.adi9018", + "https://www.ncbi.nlm.nih.gov/pubmed/38085818" + ], "kit": null, "file": "data/addgene_plasmids/207813.addgene-full.gb" }, @@ -127822,7 +161159,10 @@ "plasmid_name": "pUBQ10-YFP-GW", "sequence-type": "addgene-full", "addgene_id": "209362", - "references": [], + "references": [ + "https://doi.org/10.1186/s13104-015-1010-6", + "https://www.ncbi.nlm.nih.gov/pubmed/25884475" + ], "kit": null, "file": "data/addgene_plasmids/209362.addgene-full.gb" }, @@ -127831,7 +161171,9 @@ "plasmid_name": "piggyBac-rtTA (4th_Gen)-NFIB-SOX9-IRES-mKate2 (VK_1244)", "sequence-type": "addgene-full", "addgene_id": "209082", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.11.08.515615" + ], "kit": null, "file": "data/addgene_plasmids/209082.addgene-full.gb" }, @@ -127840,7 +161182,10 @@ "plasmid_name": "pCMV 3xFLAG-LC3C WT", "sequence-type": "addgene-full", "addgene_id": "123095", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123095.addgene-full.gb" }, @@ -127849,7 +161194,10 @@ "plasmid_name": "pAd-PR.CC9", "sequence-type": "addgene-full", "addgene_id": "192935", - "references": [], + "references": [ + "https://doi.org/10.1186/s12943-022-01661-2", + "https://www.ncbi.nlm.nih.gov/pubmed/36192757" + ], "kit": null, "file": "data/addgene_plasmids/192935.addgene-full.gb" }, @@ -127858,7 +161206,10 @@ "plasmid_name": "pmCellFree_KA2_ZIKV NS3", "sequence-type": "addgene-full", "addgene_id": "145365", - "references": [], + "references": [ + "https://doi.org/10.1021/acs.jproteome.9b00771", + "https://www.ncbi.nlm.nih.gov/pubmed/32081002" + ], "kit": null, "file": "data/addgene_plasmids/145365.addgene-full.gb" }, @@ -127867,7 +161218,10 @@ "plasmid_name": "POLN_pDEST17", "sequence-type": "depositor-full", "addgene_id": "64885", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkq048", + "https://www.ncbi.nlm.nih.gov/pubmed/20144948" + ], "kit": null, "file": "data/addgene_plasmids/64885.depositor-full.gb" }, @@ -127876,7 +161230,10 @@ "plasmid_name": "C234-E06: attB2r-FLAG-attB3", "sequence-type": "addgene-full", "addgene_id": "162910", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -127888,7 +161245,10 @@ "plasmid_name": "pDONR223_TSC2_WT", "sequence-type": "addgene-full", "addgene_id": "82281", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82281.addgene-full.gb" }, @@ -127897,7 +161257,10 @@ "plasmid_name": "pDONR221-NIPA1_STOP", "sequence-type": "addgene-full", "addgene_id": "161476", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161476.addgene-full.gb" }, @@ -127906,7 +161269,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter mir30-2", "sequence-type": "depositor-full", "addgene_id": "46689", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46689.depositor-full.gb" }, @@ -127915,7 +161281,10 @@ "plasmid_name": "pDestTol2-actinb-kcnj13-EGFP", "sequence-type": "addgene-full", "addgene_id": "164940", - "references": [], + "references": [ + "https://doi.org/10.1534/genetics.120.303390", + "https://www.ncbi.nlm.nih.gov/pubmed/32546498" + ], "kit": null, "file": "data/addgene_plasmids/164940.addgene-full.gb" }, @@ -127924,7 +161293,10 @@ "plasmid_name": "GFP-TAF1", "sequence-type": "addgene-full", "addgene_id": "65395", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.252189.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25593309" + ], "kit": null, "file": "data/addgene_plasmids/65395.addgene-full.gb" }, @@ -127933,7 +161305,6 @@ "plasmid_name": "His8:MBP-tev-Gly-eK-Flv", "sequence-type": "addgene-full", "addgene_id": "83383", - "references": [], "kit": null, "file": "data/addgene_plasmids/83383.addgene-full.gb" }, @@ -127942,7 +161313,10 @@ "plasmid_name": "Active Wnt9A-V5", "sequence-type": "depositor-full", "addgene_id": "43820", - "references": [], + "references": [ + "https://doi.org/10.1074/jbc.M114.575027", + "https://www.ncbi.nlm.nih.gov/pubmed/24841207" + ], "kit": null, "file": "data/addgene_plasmids/43820.depositor-full.gb" }, @@ -127951,7 +161325,10 @@ "plasmid_name": "pRATIO2251", "sequence-type": "addgene-full", "addgene_id": "141305", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141305.addgene-full.gb" }, @@ -127960,7 +161337,10 @@ "plasmid_name": "pHAGE-PIK3CA-K111N", "sequence-type": "addgene-full", "addgene_id": "116507", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116507.addgene-full.gb" }, @@ -127969,7 +161349,10 @@ "plasmid_name": "pEF5B-FRT-cilia-APEX", "sequence-type": "depositor-full", "addgene_id": "73186", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.015", + "https://www.ncbi.nlm.nih.gov/pubmed/26585297" + ], "kit": null, "file": "data/addgene_plasmids/73186.depositor-full.gb" }, @@ -127978,7 +161361,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_ORF10", "sequence-type": "addgene-full", "addgene_id": "169398", - "references": [], "kit": null, "file": "data/addgene_plasmids/169398.addgene-full.gb" }, @@ -127987,7 +161369,10 @@ "plasmid_name": "pDONR P4-P1R-V5-6xHis", "sequence-type": "depositor-full", "addgene_id": "48346", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-2199-14-18", + "https://www.ncbi.nlm.nih.gov/pubmed/23957834" + ], "kit": { "name": "MultiSite Gateway Kit", "url": "https://www.addgene.org/1000000050/" @@ -127999,7 +161384,10 @@ "plasmid_name": "pCFJ2249 - [1-2] ENTR - Fluor - ce-GFP (1 intron, syntrons(3), no_atg, no_stop)", "sequence-type": "addgene-full", "addgene_id": "159847", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159847.addgene-full.gb" }, @@ -128008,7 +161396,10 @@ "plasmid_name": "DsRed2_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176988", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176988.addgene-full.gb" }, @@ -128017,7 +161408,10 @@ "plasmid_name": "G-RCAS (A)", "sequence-type": "addgene-full", "addgene_id": "15182", - "references": [], + "references": [ + "https://doi.org/10.1186/1471-213X-6-2", + "https://www.ncbi.nlm.nih.gov/pubmed/16426460" + ], "kit": null, "file": "data/addgene_plasmids/15182.addgene-full.gb" }, @@ -128026,7 +161420,10 @@ "plasmid_name": "pHAGE-EPHA3", "sequence-type": "addgene-full", "addgene_id": "116733", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116733.addgene-full.gb" }, @@ -128035,7 +161432,10 @@ "plasmid_name": "pAD-CMV-STAT5B-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "83257", - "references": [], + "references": [ + "https://doi.org/10.1016/j.jid.2016.04.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27131881" + ], "kit": null, "file": "data/addgene_plasmids/83257.addgene-full.gb" }, @@ -128044,7 +161444,6 @@ "plasmid_name": "p667-UBC-DYRK2-FullLength-V5-miniTurbo_IDG-K", "sequence-type": "addgene-full", "addgene_id": "198010", - "references": [], "kit": null, "file": "data/addgene_plasmids/198010.addgene-full.gb" }, @@ -128053,7 +161452,10 @@ "plasmid_name": "MAC_C_AOX", "sequence-type": "addgene-full", "addgene_id": "111661", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111661.addgene-full.gb" }, @@ -128062,7 +161464,10 @@ "plasmid_name": "pYPQ265E3", "sequence-type": "addgene-full", "addgene_id": "164720", - "references": [], + "references": [ + "https://doi.org/10.1111/pbi.13635", + "https://www.ncbi.nlm.nih.gov/pubmed/34042262" + ], "kit": null, "file": "data/addgene_plasmids/164720.addgene-full.gb" }, @@ -128071,7 +161476,10 @@ "plasmid_name": "pDONR223_CBFB_p.R151H", "sequence-type": "addgene-full", "addgene_id": "81267", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -128083,7 +161491,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CSNK1G2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "214459", - "references": [], "kit": null, "file": "data/addgene_plasmids/214459.addgene-full.gb" }, @@ -128092,7 +161499,6 @@ "plasmid_name": "pEFS 4r-3r", "sequence-type": "depositor-full", "addgene_id": "20100", - "references": [], "kit": null, "file": "data/addgene_plasmids/20100.depositor-full.gb" }, @@ -128101,7 +161507,10 @@ "plasmid_name": "pIRES-Puro-MGMT", "sequence-type": "addgene-full", "addgene_id": "187654", - "references": [], + "references": [ + "https://doi.org/10.3390/cancers14153572", + "https://www.ncbi.nlm.nih.gov/pubmed/35892832" + ], "kit": null, "file": "data/addgene_plasmids/187654.addgene-full.gb" }, @@ -128110,7 +161519,10 @@ "plasmid_name": "pRU294", "sequence-type": "addgene-full", "addgene_id": "167689", - "references": [], + "references": [ + "https://doi.org/10.1186/s13007-021-00811-9", + "https://www.ncbi.nlm.nih.gov/pubmed/34717688" + ], "kit": null, "file": "data/addgene_plasmids/167689.addgene-full.gb" }, @@ -128119,7 +161531,6 @@ "plasmid_name": "IDG_CLIC2_OE_1", "sequence-type": "addgene-full", "addgene_id": "161642", - "references": [], "kit": null, "file": "data/addgene_plasmids/161642.addgene-full.gb" }, @@ -128128,7 +161539,10 @@ "plasmid_name": "pLG173", "sequence-type": "addgene-full", "addgene_id": "124368", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-019-0412-5", + "https://www.ncbi.nlm.nih.gov/pubmed/31792444" + ], "kit": null, "file": "data/addgene_plasmids/124368.addgene-full.gb" }, @@ -128137,7 +161551,10 @@ "plasmid_name": "pME DN-E-cadherin", "sequence-type": "addgene-full", "addgene_id": "135209", - "references": [], + "references": [ + "https://doi.org/10.1016/j.immuni.2016.09.014", + "https://www.ncbi.nlm.nih.gov/pubmed/27760340" + ], "kit": null, "file": "data/addgene_plasmids/135209.addgene-full.gb" }, @@ -128146,7 +161563,10 @@ "plasmid_name": "pDONR207-MUM2sp-ADPG2", "sequence-type": "addgene-full", "addgene_id": "170723", - "references": [], + "references": [ + "https://doi.org/10.1093/pcp/pcab077", + "https://www.ncbi.nlm.nih.gov/pubmed/34059917" + ], "kit": null, "file": "data/addgene_plasmids/170723.addgene-full.gb" }, @@ -128155,7 +161575,10 @@ "plasmid_name": "pGL4.23-GW", "sequence-type": "addgene-full", "addgene_id": "60323", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60323.addgene-full.gb" }, @@ -128164,7 +161587,6 @@ "plasmid_name": "R777-E140 Hs.NF1-nostop", "sequence-type": "depositor-full", "addgene_id": "70424", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -128176,7 +161598,10 @@ "plasmid_name": "pAG303GAL-Cerulean-ccdB", "sequence-type": "depositor-full", "addgene_id": "14397", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -128188,7 +161613,10 @@ "plasmid_name": "pLX313-Renilla luciferase", "sequence-type": "addgene-full", "addgene_id": "118016", - "references": [], + "references": [ + "https://doi.org/10.1038/s41588-018-0204-y", + "https://www.ncbi.nlm.nih.gov/pubmed/30224644" + ], "kit": null, "file": "data/addgene_plasmids/118016.addgene-full.gb" }, @@ -128197,7 +161625,10 @@ "plasmid_name": "pMuLE ENTR CMV CreERT2 R4-R3", "sequence-type": "depositor-full", "addgene_id": "62173", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62173.depositor-full.gb" }, @@ -128206,7 +161637,10 @@ "plasmid_name": "pHAGE-PDGFRA-G185W", "sequence-type": "addgene-full", "addgene_id": "116448", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116448.addgene-full.gb" }, @@ -128215,7 +161649,10 @@ "plasmid_name": "pEntry_HCoV-229E-ORF4a", "sequence-type": "depositor-full", "addgene_id": "168963", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168963.depositor-full.gb" }, @@ -128224,7 +161661,10 @@ "plasmid_name": "LIIIbeta R A-B", "sequence-type": "depositor-full", "addgene_id": "54390", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54390.depositor-full.gb" }, @@ -128233,7 +161673,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP5 Cys146Ala_nostop", "sequence-type": "addgene-full", "addgene_id": "154030", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154030.addgene-full.gb" }, @@ -128242,7 +161685,10 @@ "plasmid_name": "pCPP5617", "sequence-type": "addgene-full", "addgene_id": "128706", - "references": [], + "references": [ + "https://doi.org/10.1094/MPMI-21-4-0490", + "https://www.ncbi.nlm.nih.gov/pubmed/18321194" + ], "kit": null, "file": "data/addgene_plasmids/128706.addgene-full.gb" }, @@ -128251,7 +161697,10 @@ "plasmid_name": "pDONR221_SLC26A3", "sequence-type": "addgene-full", "addgene_id": "132020", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132020.addgene-full.gb" }, @@ -128260,7 +161709,6 @@ "plasmid_name": "Hs.KRAS4b G12R", "sequence-type": "depositor-full", "addgene_id": "83143", - "references": [], "kit": null, "file": "data/addgene_plasmids/83143.depositor-full.gb" }, @@ -128269,7 +161717,10 @@ "plasmid_name": "LZRS-Flag_EZH2_ER", "sequence-type": "addgene-full", "addgene_id": "26111", - "references": [], + "references": [ + "https://doi.org/10.1038/nature08975", + "https://www.ncbi.nlm.nih.gov/pubmed/20393566" + ], "kit": null, "file": "data/addgene_plasmids/26111.addgene-full.gb" }, @@ -128278,7 +161729,10 @@ "plasmid_name": "pEntry_HCoV-NL63-nsp3", "sequence-type": "addgene-full", "addgene_id": "168930", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168930.addgene-full.gb" }, @@ -128287,7 +161741,10 @@ "plasmid_name": "pLenti-TO/CMV-puro-DD-PAmCherry1-KRas G12D", "sequence-type": "addgene-full", "addgene_id": "177320", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1509123112", + "https://www.ncbi.nlm.nih.gov/pubmed/26080442" + ], "kit": null, "file": "data/addgene_plasmids/177320.addgene-full.gb" }, @@ -128296,7 +161753,10 @@ "plasmid_name": "pHAGE-BRAF-L618F", "sequence-type": "addgene-full", "addgene_id": "116182", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116182.addgene-full.gb" }, @@ -128305,7 +161765,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 E_stop", "sequence-type": "addgene-full", "addgene_id": "168684", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168684.addgene-full.gb" }, @@ -128314,7 +161777,10 @@ "plasmid_name": "TFORF3026", "sequence-type": "addgene-full", "addgene_id": "144502", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144502.addgene-full.gb" }, @@ -128323,7 +161789,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-NEK10_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189874", - "references": [], "kit": null, "file": "data/addgene_plasmids/189874.addgene-full.gb" }, @@ -128332,7 +161797,10 @@ "plasmid_name": "pDONR223_PIK3CA_WT", "sequence-type": "addgene-full", "addgene_id": "81736", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -128344,7 +161812,10 @@ "plasmid_name": "pDONR223_FAM196A_WT", "sequence-type": "addgene-full", "addgene_id": "81882", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -128356,7 +161827,10 @@ "plasmid_name": "p{Mhc-F4-678-DsRed::FRT-RC,attB}", "sequence-type": "addgene-full", "addgene_id": "182187", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182187.addgene-full.gb" }, @@ -128365,7 +161839,10 @@ "plasmid_name": "pDONR221-SLC35A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161313", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161313.addgene-full.gb" }, @@ -128374,7 +161851,10 @@ "plasmid_name": "R620-M06-303: CMV51p> TPAss-SARS-CoV-2 S-RBD(319-529)-3C-His8-SBP K417N/E484K/N501Y", "sequence-type": "addgene-full", "addgene_id": "170192", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2020.105802", + "https://www.ncbi.nlm.nih.gov/pubmed/33248226" + ], "kit": null, "file": "data/addgene_plasmids/170192.addgene-full.gb" }, @@ -128383,7 +161863,6 @@ "plasmid_name": "R777-E226 Hs.RAPGEF2-nostop", "sequence-type": "depositor-full", "addgene_id": "70510", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -128395,7 +161874,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF7a_stop", "sequence-type": "addgene-full", "addgene_id": "168564", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168564.addgene-full.gb" }, @@ -128404,7 +161886,10 @@ "plasmid_name": "pLX311-SHOC2-V5", "sequence-type": "addgene-full", "addgene_id": "134521", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2019.08.090", + "https://www.ncbi.nlm.nih.gov/pubmed/31577942" + ], "kit": null, "file": "data/addgene_plasmids/134521.addgene-full.gb" }, @@ -128413,7 +161898,10 @@ "plasmid_name": "pHAGE-EGFR-H773_V774insNPH", "sequence-type": "addgene-full", "addgene_id": "116262", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116262.addgene-full.gb" }, @@ -128422,7 +161910,10 @@ "plasmid_name": "TFORF3480", "sequence-type": "addgene-full", "addgene_id": "144956", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144956.addgene-full.gb" }, @@ -128431,7 +161922,10 @@ "plasmid_name": "pTol1-UAS-nlstdTomato", "sequence-type": "depositor-full", "addgene_id": "67693", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.137901", + "https://www.ncbi.nlm.nih.gov/pubmed/27621059" + ], "kit": null, "file": "data/addgene_plasmids/67693.depositor-full.gb" }, @@ -128440,7 +161934,10 @@ "plasmid_name": "pBi2FC-N-MPK8-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216138", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216138.addgene-full.gb" }, @@ -128449,7 +161946,6 @@ "plasmid_name": "pENTR L1-13XLexAop2-L4", "sequence-type": "depositor-full", "addgene_id": "41434", - "references": [], "kit": null, "file": "data/addgene_plasmids/41434.depositor-full.gb" }, @@ -128458,7 +161954,10 @@ "plasmid_name": "TFORF3203", "sequence-type": "addgene-full", "addgene_id": "144679", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144679.addgene-full.gb" }, @@ -128467,7 +161966,10 @@ "plasmid_name": "plenti-CAG-gate-FLAG-IRES-GFP", "sequence-type": "addgene-full", "addgene_id": "107398", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107398.addgene-full.gb" }, @@ -128476,7 +161978,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK7_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158194", - "references": [], "kit": null, "file": "data/addgene_plasmids/158194.addgene-full.gb" }, @@ -128485,7 +161986,10 @@ "plasmid_name": "pCAM-kan-R4R3", "sequence-type": "depositor-full", "addgene_id": "71275", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.01246", + "https://www.ncbi.nlm.nih.gov/pubmed/26644504" + ], "kit": null, "file": "data/addgene_plasmids/71275.depositor-full.gb" }, @@ -128494,7 +161998,10 @@ "plasmid_name": "pDONR221-SLC52A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161068", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161068.addgene-full.gb" }, @@ -128503,7 +162010,10 @@ "plasmid_name": "LC201: pMVP/PB/Puro-DEST", "sequence-type": "addgene-full", "addgene_id": "121874", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121874.addgene-full.gb" }, @@ -128512,7 +162022,10 @@ "plasmid_name": "beta-catenin (S33A, S37A, T41A, S45A)-pcw107", "sequence-type": "addgene-full", "addgene_id": "64612", - "references": [], + "references": [ + "https://doi.org/10.1126/scisignal.aaa1877", + "https://www.ncbi.nlm.nih.gov/pubmed/25538079" + ], "kit": null, "file": "data/addgene_plasmids/64612.addgene-full.gb" }, @@ -128521,7 +162034,10 @@ "plasmid_name": "pCW-eGFP-FHA", "sequence-type": "addgene-full", "addgene_id": "114129", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-018-0340-7", + "https://www.ncbi.nlm.nih.gov/pubmed/30022168" + ], "kit": null, "file": "data/addgene_plasmids/114129.addgene-full.gb" }, @@ -128530,7 +162046,10 @@ "plasmid_name": "pEntry_SARS-CoV-1-ORF7b", "sequence-type": "depositor-full", "addgene_id": "168857", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168857.depositor-full.gb" }, @@ -128539,7 +162058,10 @@ "plasmid_name": "pAAV2-SynTetOff-FGL", "sequence-type": "addgene-full", "addgene_id": "190234", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0169611", + "https://www.ncbi.nlm.nih.gov/pubmed/28060929" + ], "kit": null, "file": "data/addgene_plasmids/190234.addgene-full.gb" }, @@ -128548,7 +162070,10 @@ "plasmid_name": "pDONR223_CPXCR1_WT", "sequence-type": "addgene-full", "addgene_id": "81819", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -128560,7 +162085,10 @@ "plasmid_name": "pHAGE-AXL-L423Q", "sequence-type": "addgene-full", "addgene_id": "116119", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116119.addgene-full.gb" }, @@ -128569,7 +162097,10 @@ "plasmid_name": "pDONR221-ZNF197", "sequence-type": "depositor-full", "addgene_id": "101547", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/101547.depositor-full.gb" }, @@ -128578,7 +162109,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 NSP13_nostop", "sequence-type": "addgene-full", "addgene_id": "149315", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149315.addgene-full.gb" }, @@ -128587,7 +162121,10 @@ "plasmid_name": "p3E-Clover", "sequence-type": "addgene-full", "addgene_id": "126572", - "references": [], + "references": [ + "https://doi.org/10.1083/jcb.201905065", + "https://www.ncbi.nlm.nih.gov/pubmed/34633413" + ], "kit": null, "file": "data/addgene_plasmids/126572.addgene-full.gb" }, @@ -128596,7 +162133,10 @@ "plasmid_name": "pMOS016: roGFP2-Orp1 H2O2 oxidation sensor (cytosolic)", "sequence-type": "addgene-full", "addgene_id": "163058", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163058.addgene-full.gb" }, @@ -128605,7 +162145,10 @@ "plasmid_name": "TFORF3123", "sequence-type": "addgene-full", "addgene_id": "144599", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144599.addgene-full.gb" }, @@ -128614,7 +162157,10 @@ "plasmid_name": "pDONR223_DCAF8_p.P156S", "sequence-type": "addgene-full", "addgene_id": "82864", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82864.addgene-full.gb" }, @@ -128623,7 +162169,10 @@ "plasmid_name": "pENTR D-TOPO-C3_39", "sequence-type": "depositor-full", "addgene_id": "60280", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60280.depositor-full.gb" }, @@ -128632,7 +162181,10 @@ "plasmid_name": "pDONR223_PIK3CB_p.E497D", "sequence-type": "addgene-full", "addgene_id": "81599", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -128644,7 +162196,10 @@ "plasmid_name": "pDONR221_SLC16A12", "sequence-type": "addgene-full", "addgene_id": "131958", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131958.addgene-full.gb" }, @@ -128653,7 +162208,10 @@ "plasmid_name": "p3E-rab32a", "sequence-type": "addgene-full", "addgene_id": "109689", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109689.addgene-full.gb" }, @@ -128662,7 +162220,6 @@ "plasmid_name": "pLenti6.3/Envelope", "sequence-type": "addgene-full", "addgene_id": "120839", - "references": [], "kit": null, "file": "data/addgene_plasmids/120839.addgene-full.gb" }, @@ -128671,7 +162228,10 @@ "plasmid_name": "pGMCK-0X750-luxAB-DAS+4", "sequence-type": "depositor-full", "addgene_id": "49517", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1315860110", + "https://www.ncbi.nlm.nih.gov/pubmed/24191058" + ], "kit": null, "file": "data/addgene_plasmids/49517.depositor-full.gb" }, @@ -128680,7 +162240,10 @@ "plasmid_name": "p3E-EHD2b", "sequence-type": "addgene-full", "addgene_id": "109569", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109569.addgene-full.gb" }, @@ -128689,7 +162252,10 @@ "plasmid_name": "pENTR221-H1-sgGFP1-U6-sgGFP2-7SK-sgGFP3", "sequence-type": "addgene-full", "addgene_id": "87906", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87906.addgene-full.gb" }, @@ -128698,7 +162264,10 @@ "plasmid_name": "pDONR223_IDH1_p.R132L", "sequence-type": "addgene-full", "addgene_id": "81679", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -128710,7 +162279,10 @@ "plasmid_name": "ADSS_pLX307", "sequence-type": "addgene-full", "addgene_id": "98316", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98316.addgene-full.gb" }, @@ -128719,7 +162291,10 @@ "plasmid_name": "pPN10", "sequence-type": "addgene-full", "addgene_id": "114386", - "references": [], + "references": [ + "https://doi.org/10.1038/ncomms13272", + "https://www.ncbi.nlm.nih.gov/pubmed/27827362" + ], "kit": null, "file": "data/addgene_plasmids/114386.addgene-full.gb" }, @@ -128728,7 +162303,10 @@ "plasmid_name": "pEntry_MERS-CoV-nsp6", "sequence-type": "depositor-full", "addgene_id": "168819", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168819.depositor-full.gb" }, @@ -128737,7 +162315,10 @@ "plasmid_name": "W118-1_hZBTB7B_D35N_R49Q", "sequence-type": "addgene-full", "addgene_id": "180383", - "references": [], + "references": [ + "https://doi.org/10.15252/embj.2020106106", + "https://www.ncbi.nlm.nih.gov/pubmed/33709453" + ], "kit": null, "file": "data/addgene_plasmids/180383.addgene-full.gb" }, @@ -128746,7 +162327,10 @@ "plasmid_name": "actc1b-mKate2-rab23", "sequence-type": "addgene-full", "addgene_id": "109612", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109612.addgene-full.gb" }, @@ -128755,7 +162339,10 @@ "plasmid_name": "TFORF3260", "sequence-type": "addgene-full", "addgene_id": "144736", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144736.addgene-full.gb" }, @@ -128764,7 +162351,10 @@ "plasmid_name": "pcDNA3_GLP1R-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194380", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194380.addgene-full.gb" }, @@ -128773,7 +162363,10 @@ "plasmid_name": "pcDNA3.2/V5 mmu-mir-122", "sequence-type": "addgene-full", "addgene_id": "26325", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.1884710", + "https://www.ncbi.nlm.nih.gov/pubmed/20413612" + ], "kit": null, "file": "data/addgene_plasmids/26325.addgene-full.gb" }, @@ -128782,7 +162375,10 @@ "plasmid_name": "TFORF3406", "sequence-type": "addgene-full", "addgene_id": "144882", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144882.addgene-full.gb" }, @@ -128791,7 +162387,10 @@ "plasmid_name": "pDONR221-SLC17A8_STOP", "sequence-type": "addgene-full", "addgene_id": "161127", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161127.addgene-full.gb" }, @@ -128800,7 +162399,10 @@ "plasmid_name": "pDONR223_FBXW7_p.R658Q", "sequence-type": "addgene-full", "addgene_id": "81502", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -128812,7 +162414,10 @@ "plasmid_name": "p3E-H2B-mCerulean3-P2A-mKOFP2-CAAX", "sequence-type": "depositor-full", "addgene_id": "75177", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -128824,7 +162429,10 @@ "plasmid_name": "SPOP-V5 (WT)", "sequence-type": "addgene-full", "addgene_id": "169720", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.08.027", + "https://www.ncbi.nlm.nih.gov/pubmed/30244836" + ], "kit": null, "file": "data/addgene_plasmids/169720.addgene-full.gb" }, @@ -128833,7 +162441,10 @@ "plasmid_name": "SIN-CMV-Ca9-WPRE", "sequence-type": "addgene-full", "addgene_id": "87874", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.08.075", + "https://www.ncbi.nlm.nih.gov/pubmed/28930690" + ], "kit": null, "file": "data/addgene_plasmids/87874.addgene-full.gb" }, @@ -128842,7 +162453,10 @@ "plasmid_name": "KY901: pMVP (L3-L2) P2A-mCherry + polyA", "sequence-type": "addgene-full", "addgene_id": "121766", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121766.addgene-full.gb" }, @@ -128851,7 +162465,10 @@ "plasmid_name": "pE2n", "sequence-type": "depositor-full", "addgene_id": "17456", - "references": [], + "references": [ + "https://doi.org/10.1186/1746-4811-4-3", + "https://www.ncbi.nlm.nih.gov/pubmed/18211686" + ], "kit": null, "file": "data/addgene_plasmids/17456.depositor-full.gb" }, @@ -128860,7 +162477,10 @@ "plasmid_name": "pDONR223_RIT1_p.T76insTDLT", "sequence-type": "addgene-full", "addgene_id": "82916", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82916.addgene-full.gb" }, @@ -128869,7 +162489,6 @@ "plasmid_name": "pCM3.07", "sequence-type": "depositor-full", "addgene_id": "19603", - "references": [], "kit": null, "file": "data/addgene_plasmids/19603.depositor-full.gb" }, @@ -128878,7 +162497,10 @@ "plasmid_name": "pSAM2_mCherry_Mesp1", "sequence-type": "addgene-full", "addgene_id": "72687", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stem.2015.12.001", + "https://www.ncbi.nlm.nih.gov/pubmed/26877223" + ], "kit": null, "file": "data/addgene_plasmids/72687.addgene-full.gb" }, @@ -128887,7 +162509,10 @@ "plasmid_name": "pAFMW-Nbr", "sequence-type": "addgene-full", "addgene_id": "188584", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2018156117", + "https://www.ncbi.nlm.nih.gov/pubmed/33199607" + ], "kit": null, "file": "data/addgene_plasmids/188584.addgene-full.gb" }, @@ -128896,7 +162521,10 @@ "plasmid_name": "pDONR223 SARS-CoV-1 ORF3a_stop", "sequence-type": "addgene-full", "addgene_id": "168559", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168559.addgene-full.gb" }, @@ -128905,7 +162533,10 @@ "plasmid_name": "HBM-mVEGF-C-HisTag-pENTR", "sequence-type": "depositor-full", "addgene_id": "64066", - "references": [], + "references": [ + "https://doi.org/10.1016/j.pep.2015.03.001", + "https://www.ncbi.nlm.nih.gov/pubmed/25758709" + ], "kit": null, "file": "data/addgene_plasmids/64066.depositor-full.gb" }, @@ -128914,7 +162545,10 @@ "plasmid_name": "pAG426GAL-EYFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14347", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -128926,7 +162560,6 @@ "plasmid_name": "HCP5", "sequence-type": "addgene-full", "addgene_id": "166107", - "references": [], "kit": null, "file": "data/addgene_plasmids/166107.addgene-full.gb" }, @@ -128935,7 +162568,10 @@ "plasmid_name": "METTL3", "sequence-type": "addgene-full", "addgene_id": "155725", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155725.addgene-full.gb" }, @@ -128944,7 +162580,10 @@ "plasmid_name": "TFORF3168", "sequence-type": "addgene-full", "addgene_id": "144644", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144644.addgene-full.gb" }, @@ -128953,7 +162592,10 @@ "plasmid_name": "actc1b-mKate2-Rab3b", "sequence-type": "addgene-full", "addgene_id": "109760", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109760.addgene-full.gb" }, @@ -128962,7 +162604,10 @@ "plasmid_name": "pMuLE (L1-L4) 2X PRE", "sequence-type": "addgene-full", "addgene_id": "206166", - "references": [], + "references": [ + "https://doi.org/10.1007/s10911-023-09550-0", + "https://www.ncbi.nlm.nih.gov/pubmed/38019315" + ], "kit": null, "file": "data/addgene_plasmids/206166.addgene-full.gb" }, @@ -128971,7 +162616,10 @@ "plasmid_name": "pENTR1A-GFP-N2 (FR1)", "sequence-type": "depositor-full", "addgene_id": "19364", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/19364.depositor-full.gb" }, @@ -128980,7 +162628,10 @@ "plasmid_name": "pDONR223_SPAG8_p.P344L", "sequence-type": "addgene-full", "addgene_id": "81470", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -128992,7 +162643,10 @@ "plasmid_name": "pDONR221-SLC1A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161055", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161055.addgene-full.gb" }, @@ -129001,7 +162655,10 @@ "plasmid_name": "IY601: pMVP/Lenti/Blast-DEST", "sequence-type": "addgene-full", "addgene_id": "121849", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121849.addgene-full.gb" }, @@ -129010,7 +162667,6 @@ "plasmid_name": "pAM-PAT-ProATE2 GW", "sequence-type": "depositor-full", "addgene_id": "80682", - "references": [], "kit": null, "file": "data/addgene_plasmids/80682.depositor-full.gb" }, @@ -129019,7 +162675,10 @@ "plasmid_name": "pDONR223_TNF_WT", "sequence-type": "addgene-full", "addgene_id": "81824", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -129031,7 +162690,10 @@ "plasmid_name": "pDONR223_HAUS1_WT", "sequence-type": "addgene-full", "addgene_id": "81790", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -129055,7 +162717,10 @@ "plasmid_name": "pMOS028E: Entry vector for: Mitycam calcium sensor (mitochondrial)", "sequence-type": "addgene-full", "addgene_id": "163065", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17607-5", + "https://www.ncbi.nlm.nih.gov/pubmed/32753572" + ], "kit": null, "file": "data/addgene_plasmids/163065.addgene-full.gb" }, @@ -129064,7 +162729,10 @@ "plasmid_name": "pDEST17-UbE2L3", "sequence-type": "addgene-full", "addgene_id": "15795", - "references": [], + "references": [ + "https://doi.org/10.1038/nature05902", + "https://www.ncbi.nlm.nih.gov/pubmed/17597759" + ], "kit": null, "file": "data/addgene_plasmids/15795.addgene-full.gb" }, @@ -129073,7 +162741,10 @@ "plasmid_name": "pHAGE-B2M-M1L", "sequence-type": "addgene-full", "addgene_id": "116124", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116124.addgene-full.gb" }, @@ -129082,7 +162753,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 ORF9Bwu_nostop", "sequence-type": "addgene-full", "addgene_id": "149328", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/149328.addgene-full.gb" }, @@ -129091,7 +162765,6 @@ "plasmid_name": "R777-E325 Hs.SPRED3", "sequence-type": "depositor-full", "addgene_id": "70609", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -129103,7 +162776,10 @@ "plasmid_name": "pEBTetBl-CLIP-plk4", "sequence-type": "addgene-full", "addgene_id": "136837", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136837.addgene-full.gb" }, @@ -129112,7 +162788,6 @@ "plasmid_name": "R777-E134 Hs.MLST8-nostop", "sequence-type": "addgene-full", "addgene_id": "70418", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -129124,7 +162799,6 @@ "plasmid_name": "pSCM167.2-Venus-VF-hADAM10", "sequence-type": "addgene-full", "addgene_id": "189552", - "references": [], "kit": null, "file": "data/addgene_plasmids/189552.addgene-full.gb" }, @@ -129133,7 +162807,10 @@ "plasmid_name": "pDONR223_ERBB2_p.S418T", "sequence-type": "addgene-full", "addgene_id": "82859", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82859.addgene-full.gb" }, @@ -129142,7 +162819,10 @@ "plasmid_name": "pDONR223-ZNF41", "sequence-type": "addgene-full", "addgene_id": "88033", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88033.addgene-full.gb" }, @@ -129151,7 +162831,10 @@ "plasmid_name": "TFORF3348", "sequence-type": "addgene-full", "addgene_id": "144824", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144824.addgene-full.gb" }, @@ -129160,7 +162843,6 @@ "plasmid_name": "R777-E036 Hs.DUSP2-nostop", "sequence-type": "depositor-full", "addgene_id": "70320", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -129172,7 +162854,10 @@ "plasmid_name": "pHAGE-EGFR-T790M", "sequence-type": "addgene-full", "addgene_id": "116310", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116310.addgene-full.gb" }, @@ -129181,7 +162866,10 @@ "plasmid_name": "pQLinkHD_mVenus", "sequence-type": "addgene-full", "addgene_id": "118861", - "references": [], + "references": [ + "https://doi.org/10.1021/acscombsci.8b00101", + "https://www.ncbi.nlm.nih.gov/pubmed/30339749" + ], "kit": null, "file": "data/addgene_plasmids/118861.addgene-full.gb" }, @@ -129190,7 +162878,10 @@ "plasmid_name": "pDONR221_SLC22A6", "sequence-type": "addgene-full", "addgene_id": "131965", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131965.addgene-full.gb" }, @@ -129199,7 +162890,10 @@ "plasmid_name": "pWS-TK2", "sequence-type": "addgene-full", "addgene_id": "20348", - "references": [], + "references": [ + "https://doi.org/10.1038/nprot.2008.70", + "https://www.ncbi.nlm.nih.gov/pubmed/18546598" + ], "kit": null, "file": "data/addgene_plasmids/20348.addgene-full.gb" }, @@ -129208,7 +162902,10 @@ "plasmid_name": "TFORF3314", "sequence-type": "addgene-full", "addgene_id": "144790", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144790.addgene-full.gb" }, @@ -129217,7 +162914,10 @@ "plasmid_name": "TFORF2994", "sequence-type": "addgene-full", "addgene_id": "144470", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144470.addgene-full.gb" }, @@ -129226,7 +162926,10 @@ "plasmid_name": "p3E-ING2", "sequence-type": "addgene-full", "addgene_id": "109554", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109554.addgene-full.gb" }, @@ -129235,7 +162938,10 @@ "plasmid_name": "Ad-FOXO1 1-558", "sequence-type": "addgene-full", "addgene_id": "131531", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0041168", + "https://www.ncbi.nlm.nih.gov/pubmed/22848439" + ], "kit": null, "file": "data/addgene_plasmids/131531.addgene-full.gb" }, @@ -129244,7 +162950,10 @@ "plasmid_name": "pDONR221-kcnj19b", "sequence-type": "addgene-full", "addgene_id": "173149", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173149.addgene-full.gb" }, @@ -129253,7 +162962,10 @@ "plasmid_name": "pAG413GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14309", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -129265,7 +162977,10 @@ "plasmid_name": "pDONR221-SLC38A1_STOP", "sequence-type": "addgene-full", "addgene_id": "161261", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161261.addgene-full.gb" }, @@ -129274,7 +162989,10 @@ "plasmid_name": "nls-EGFP", "sequence-type": "addgene-full", "addgene_id": "67652", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2015.10.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26585296" + ], "kit": null, "file": "data/addgene_plasmids/67652.addgene-full.gb" }, @@ -129283,7 +163001,10 @@ "plasmid_name": "pGWB417", "sequence-type": "depositor-full", "addgene_id": "74811", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74811.depositor-full.gb" }, @@ -129292,7 +163013,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-MAPK4_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189906", - "references": [], "kit": null, "file": "data/addgene_plasmids/189906.addgene-full.gb" }, @@ -129301,7 +163021,6 @@ "plasmid_name": "pCWX-R4DESTR2-PGK-BSD", "sequence-type": "addgene-full", "addgene_id": "114320", - "references": [], "kit": null, "file": "data/addgene_plasmids/114320.addgene-full.gb" }, @@ -129310,7 +163029,10 @@ "plasmid_name": "pDONR223 SARS-CoV2 TEV-NSP15", "sequence-type": "addgene-full", "addgene_id": "154413", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/154413.addgene-full.gb" }, @@ -129319,7 +163041,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter cel-mir-124", "sequence-type": "depositor-full", "addgene_id": "46659", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46659.depositor-full.gb" }, @@ -129328,7 +163053,10 @@ "plasmid_name": "pFRT_TO_FlagHA_TIA1", "sequence-type": "addgene-full", "addgene_id": "106093", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106093.addgene-full.gb" }, @@ -129337,7 +163065,10 @@ "plasmid_name": "MAC3_C_CCDC22(Y557C)", "sequence-type": "addgene-full", "addgene_id": "209695", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209695.addgene-full.gb" }, @@ -129346,7 +163077,10 @@ "plasmid_name": "pLenti CMV Puro dn-cHSF1", "sequence-type": "addgene-full", "addgene_id": "134728", - "references": [], + "references": [ + "https://doi.org/10.1021/acschembio.5b00740", + "https://www.ncbi.nlm.nih.gov/pubmed/26502114" + ], "kit": null, "file": "data/addgene_plasmids/134728.addgene-full.gb" }, @@ -129355,7 +163089,10 @@ "plasmid_name": "pDONR221-W279A-short-UBASH3A-Ntag", "sequence-type": "addgene-full", "addgene_id": "192096", - "references": [], + "references": [ + "https://doi.org/10.4049/jimmunol.1801338", + "https://www.ncbi.nlm.nih.gov/pubmed/31659016" + ], "kit": null, "file": "data/addgene_plasmids/192096.addgene-full.gb" }, @@ -129364,7 +163101,6 @@ "plasmid_name": "pAM-35s-PBL27-YFPc-1", "sequence-type": "addgene-full", "addgene_id": "102388", - "references": [], "kit": null, "file": "data/addgene_plasmids/102388.addgene-full.gb" }, @@ -129373,7 +163109,6 @@ "plasmid_name": "pDEST-Spe4-RfA", "sequence-type": "addgene-full", "addgene_id": "186375", - "references": [], "kit": null, "file": "data/addgene_plasmids/186375.addgene-full.gb" }, @@ -129382,7 +163117,10 @@ "plasmid_name": "EHD2-T72A-mCherry", "sequence-type": "depositor-full", "addgene_id": "45935", - "references": [], + "references": [ + "https://doi.org/10.1038/emboj.2012.98", + "https://www.ncbi.nlm.nih.gov/pubmed/22505029" + ], "kit": null, "file": "data/addgene_plasmids/45935.depositor-full.gb" }, @@ -129391,7 +163129,10 @@ "plasmid_name": "PDF1::mCitrine-MBD", "sequence-type": "addgene-full", "addgene_id": "115222", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.162255", + "https://www.ncbi.nlm.nih.gov/pubmed/29739839" + ], "kit": null, "file": "data/addgene_plasmids/115222.addgene-full.gb" }, @@ -129400,7 +163141,9 @@ "plasmid_name": "pMpGWB202", "sequence-type": "depositor-full", "addgene_id": "68593", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68593.depositor-full.gb" }, @@ -129409,7 +163152,10 @@ "plasmid_name": "pDONR223_PIK3R3_p.M295T", "sequence-type": "addgene-full", "addgene_id": "82776", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82776.addgene-full.gb" }, @@ -129418,7 +163164,10 @@ "plasmid_name": "pDONR223_RHOA_p.F106L", "sequence-type": "addgene-full", "addgene_id": "81286", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -129430,7 +163179,6 @@ "plasmid_name": "pAG416GAL10-ccdB-6stop", "sequence-type": "addgene-full", "addgene_id": "203512", - "references": [], "kit": null, "file": "data/addgene_plasmids/203512.addgene-full.gb" }, @@ -129439,7 +163187,10 @@ "plasmid_name": "pDONR221 Drs1", "sequence-type": "depositor-full", "addgene_id": "63744", - "references": [], + "references": [ + "https://doi.org/10.1101/gad.256370.114", + "https://www.ncbi.nlm.nih.gov/pubmed/25877921" + ], "kit": null, "file": "data/addgene_plasmids/63744.depositor-full.gb" }, @@ -129448,7 +163199,9 @@ "plasmid_name": "p3E-GFP-HA no-pA", "sequence-type": "depositor-full", "addgene_id": "82589", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/27500400" + ], "kit": null, "file": "data/addgene_plasmids/82589.depositor-full.gb" }, @@ -129457,7 +163210,10 @@ "plasmid_name": "1a72", "sequence-type": "addgene-full", "addgene_id": "177690", - "references": [], + "references": [ + "https://doi.org/10.1053/j.gastro.2021.10.005", + "https://www.ncbi.nlm.nih.gov/pubmed/34655573" + ], "kit": null, "file": "data/addgene_plasmids/177690.addgene-full.gb" }, @@ -129466,7 +163222,10 @@ "plasmid_name": "pHAGE-MAPK1-E322K", "sequence-type": "addgene-full", "addgene_id": "116432", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116432.addgene-full.gb" }, @@ -129475,7 +163234,10 @@ "plasmid_name": "pLEX307-mFzd3", "sequence-type": "addgene-full", "addgene_id": "102865", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.26509", + "https://www.ncbi.nlm.nih.gov/pubmed/28885975" + ], "kit": null, "file": "data/addgene_plasmids/102865.addgene-full.gb" }, @@ -129484,7 +163246,10 @@ "plasmid_name": "MAC-CLEC4E", "sequence-type": "addgene-full", "addgene_id": "172412", - "references": [], + "references": [ + "https://doi.org/10.15252/msb.202110396", + "https://www.ncbi.nlm.nih.gov/pubmed/34709727" + ], "kit": null, "file": "data/addgene_plasmids/172412.addgene-full.gb" }, @@ -129493,7 +163258,6 @@ "plasmid_name": "MERS Mpro - His6-SUMO with autoprocessing - MSAVLQ/SGLVKM---MGVVMQ/SGVRKVTYGTAHWL", "sequence-type": "addgene-full", "addgene_id": "204814", - "references": [], "kit": null, "file": "data/addgene_plasmids/204814.addgene-full.gb" }, @@ -129502,7 +163266,10 @@ "plasmid_name": "W118-1_hTGM2-Flag", "sequence-type": "addgene-full", "addgene_id": "180407", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI156616", + "https://www.ncbi.nlm.nih.gov/pubmed/35499073" + ], "kit": null, "file": "data/addgene_plasmids/180407.addgene-full.gb" }, @@ -129511,7 +163278,10 @@ "plasmid_name": "pDL109", "sequence-type": "addgene-full", "addgene_id": "175914", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175914.addgene-full.gb" }, @@ -129520,7 +163290,10 @@ "plasmid_name": "MAC_N_ARP3B", "sequence-type": "addgene-full", "addgene_id": "111680", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-018-03523-2", + "https://www.ncbi.nlm.nih.gov/pubmed/29568061" + ], "kit": null, "file": "data/addgene_plasmids/111680.addgene-full.gb" }, @@ -129529,7 +163302,6 @@ "plasmid_name": "pENTR_Hu_CCNB2(WT)", "sequence-type": "addgene-full", "addgene_id": "136341", - "references": [], "kit": null, "file": "data/addgene_plasmids/136341.addgene-full.gb" }, @@ -129538,7 +163310,10 @@ "plasmid_name": "pYZ172", "sequence-type": "addgene-full", "addgene_id": "98409", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.117.300363", + "https://www.ncbi.nlm.nih.gov/pubmed/29321167" + ], "kit": null, "file": "data/addgene_plasmids/98409.addgene-full.gb" }, @@ -129547,7 +163322,10 @@ "plasmid_name": "pAB-EXPR(PYL-Nterm_dom_HDAC5)", "sequence-type": "addgene-full", "addgene_id": "114402", - "references": [], + "references": [ + "https://doi.org/10.1093/hmg/ddab255", + "https://www.ncbi.nlm.nih.gov/pubmed/34494094" + ], "kit": null, "file": "data/addgene_plasmids/114402.addgene-full.gb" }, @@ -129556,7 +163334,10 @@ "plasmid_name": "pCK051 p5E exorh:mCerulean", "sequence-type": "addgene-full", "addgene_id": "195952", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.201531", + "https://www.ncbi.nlm.nih.gov/pubmed/36975217" + ], "kit": null, "file": "data/addgene_plasmids/195952.addgene-full.gb" }, @@ -129565,7 +163346,10 @@ "plasmid_name": "pDONR221_HUWE1_isoform1", "sequence-type": "addgene-full", "addgene_id": "190464", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2021.06.032", + "https://www.ncbi.nlm.nih.gov/pubmed/34314700" + ], "kit": null, "file": "data/addgene_plasmids/190464.addgene-full.gb" }, @@ -129574,7 +163358,10 @@ "plasmid_name": "pENTR221 UBR5 \u2206HECT", "sequence-type": "depositor-full", "addgene_id": "81065", - "references": [], + "references": [ + "https://doi.org/10.1091/mbc.E17-04-0248", + "https://www.ncbi.nlm.nih.gov/pubmed/29742019" + ], "kit": null, "file": "data/addgene_plasmids/81065.depositor-full.gb" }, @@ -129583,7 +163370,10 @@ "plasmid_name": "pHAGE-GUCY2C", "sequence-type": "addgene-full", "addgene_id": "116749", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116749.addgene-full.gb" }, @@ -129592,7 +163382,6 @@ "plasmid_name": "pMx/ATP9B(E272Q)-HA", "sequence-type": "addgene-full", "addgene_id": "209257", - "references": [], "kit": null, "file": "data/addgene_plasmids/209257.addgene-full.gb" }, @@ -129601,7 +163390,10 @@ "plasmid_name": "pTW323", "sequence-type": "addgene-full", "addgene_id": "115954", - "references": [], + "references": [ + "https://doi.org/10.1038/s41589-018-0146-9", + "https://www.ncbi.nlm.nih.gov/pubmed/30327560" + ], "kit": null, "file": "data/addgene_plasmids/115954.addgene-full.gb" }, @@ -129610,7 +163402,10 @@ "plasmid_name": "pDEST-APIC-Flp1", "sequence-type": "addgene-full", "addgene_id": "112806", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1707467114", + "https://www.ncbi.nlm.nih.gov/pubmed/28874572" + ], "kit": null, "file": "data/addgene_plasmids/112806.addgene-full.gb" }, @@ -129619,7 +163414,10 @@ "plasmid_name": "pLenti6/V5-DEST-NCAPH", "sequence-type": "depositor-full", "addgene_id": "31214", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccr.2011.05.025", + "https://www.ncbi.nlm.nih.gov/pubmed/21741599" + ], "kit": null, "file": "data/addgene_plasmids/31214.depositor-full.gb" }, @@ -129628,7 +163426,10 @@ "plasmid_name": "pDONR223_PDZD11_WT", "sequence-type": "addgene-full", "addgene_id": "82054", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -129640,7 +163441,10 @@ "plasmid_name": "pMuLE ENTR MCS L5-L4", "sequence-type": "addgene-full", "addgene_id": "62089", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62089.addgene-full.gb" }, @@ -129649,7 +163453,10 @@ "plasmid_name": "pYPQ256", "sequence-type": "addgene-full", "addgene_id": "124312", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molp.2019.03.011", + "https://www.ncbi.nlm.nih.gov/pubmed/30928637" + ], "kit": null, "file": "data/addgene_plasmids/124312.addgene-full.gb" }, @@ -129658,7 +163465,10 @@ "plasmid_name": "HJP-180-IVS-Syn21-gp41-1C-CreB-NrdJ-1N-WPREw", "sequence-type": "addgene-full", "addgene_id": "162471", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.53041", + "https://www.ncbi.nlm.nih.gov/pubmed/32286225" + ], "kit": null, "file": "data/addgene_plasmids/162471.addgene-full.gb" }, @@ -129667,7 +163477,6 @@ "plasmid_name": "p663-UBC-V5-BRSK2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "135273", - "references": [], "kit": null, "file": "data/addgene_plasmids/135273.addgene-full.gb" }, @@ -129676,7 +163485,6 @@ "plasmid_name": "R777-E292 Hs.RPS6KA2-nostop", "sequence-type": "depositor-full", "addgene_id": "70576", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -129688,7 +163496,10 @@ "plasmid_name": "pDONR221_SLC29A4", "sequence-type": "addgene-full", "addgene_id": "132115", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132115.addgene-full.gb" }, @@ -129697,7 +163508,10 @@ "plasmid_name": "pDONR223 LC3B G120", "sequence-type": "addgene-full", "addgene_id": "123074", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123074.addgene-full.gb" }, @@ -129706,7 +163520,10 @@ "plasmid_name": "pGL4_10xUAS-CMVmin-BC0373-luc2", "sequence-type": "addgene-full", "addgene_id": "214617", - "references": [], + "references": [ + "https://doi.org/10.1016/j.xpro.2024.102987", + "https://www.ncbi.nlm.nih.gov/pubmed/38635397" + ], "kit": null, "file": "data/addgene_plasmids/214617.addgene-full.gb" }, @@ -129715,7 +163532,10 @@ "plasmid_name": "pT2-cryR;tmem88aCE1-P1Egfp", "sequence-type": "addgene-full", "addgene_id": "90148", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2017.06.070", + "https://www.ncbi.nlm.nih.gov/pubmed/28723572" + ], "kit": null, "file": "data/addgene_plasmids/90148.addgene-full.gb" }, @@ -129724,7 +163544,10 @@ "plasmid_name": "pDONR223_RAF1_p.L613V", "sequence-type": "addgene-full", "addgene_id": "82180", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82180.addgene-full.gb" }, @@ -129733,7 +163556,10 @@ "plasmid_name": "pAC1-pCR8-dCas9VP48", "sequence-type": "depositor-full", "addgene_id": "48214", - "references": [], + "references": [ + "https://doi.org/10.1038/cr.2013.122", + "https://www.ncbi.nlm.nih.gov/pubmed/23979020" + ], "kit": null, "file": "data/addgene_plasmids/48214.depositor-full.gb" }, @@ -129742,7 +163568,10 @@ "plasmid_name": "pGW-TurboID-GOI-GFP", "sequence-type": "addgene-full", "addgene_id": "209383", - "references": [], + "references": [ + "https://doi.org/10.1111/jipb.13610", + "https://www.ncbi.nlm.nih.gov/pubmed/38294100" + ], "kit": null, "file": "data/addgene_plasmids/209383.addgene-full.gb" }, @@ -129751,7 +163580,10 @@ "plasmid_name": "YAP1-V5 in pLX304", "sequence-type": "addgene-full", "addgene_id": "42555", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2012.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/23245941" + ], "kit": null, "file": "data/addgene_plasmids/42555.addgene-full.gb" }, @@ -129760,7 +163592,10 @@ "plasmid_name": "p8327 pLIX YAP1 S127A", "sequence-type": "addgene-full", "addgene_id": "184528", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.75466", + "https://www.ncbi.nlm.nih.gov/pubmed/35170430" + ], "kit": null, "file": "data/addgene_plasmids/184528.addgene-full.gb" }, @@ -129769,7 +163604,10 @@ "plasmid_name": "pDONR223_RBM11_p.R74C", "sequence-type": "addgene-full", "addgene_id": "81352", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -129781,7 +163619,10 @@ "plasmid_name": "MAC_C_EPHA8", "sequence-type": "addgene-full", "addgene_id": "187761", - "references": [], + "references": [ + "https://doi.org/10.15252/embr.202154041", + "https://www.ncbi.nlm.nih.gov/pubmed/35384245" + ], "kit": null, "file": "data/addgene_plasmids/187761.addgene-full.gb" }, @@ -129790,7 +163631,10 @@ "plasmid_name": "CHAF1B_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176969", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176969.addgene-full.gb" }, @@ -129799,7 +163643,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-TSSK1B_IDG-K", "sequence-type": "addgene-full", "addgene_id": "170616", - "references": [], "kit": null, "file": "data/addgene_plasmids/170616.addgene-full.gb" }, @@ -129808,7 +163651,6 @@ "plasmid_name": "pmCellFree_KA1_SARS-COV-2_NSP4", "sequence-type": "addgene-full", "addgene_id": "169379", - "references": [], "kit": null, "file": "data/addgene_plasmids/169379.addgene-full.gb" }, @@ -129817,7 +163659,10 @@ "plasmid_name": "MAC_N_VSX1", "sequence-type": "addgene-full", "addgene_id": "167808", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167808.addgene-full.gb" }, @@ -129826,7 +163671,10 @@ "plasmid_name": "pMH-CMV-GFP", "sequence-type": "addgene-full", "addgene_id": "133017", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2002193117", + "https://www.ncbi.nlm.nih.gov/pubmed/32611815" + ], "kit": null, "file": "data/addgene_plasmids/133017.addgene-full.gb" }, @@ -129835,7 +163683,10 @@ "plasmid_name": "pHAGE-eGFP-TAX1BP1 CC1D", "sequence-type": "addgene-full", "addgene_id": "175774", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.72328", + "https://www.ncbi.nlm.nih.gov/pubmed/34585663" + ], "kit": null, "file": "data/addgene_plasmids/175774.addgene-full.gb" }, @@ -129844,7 +163695,6 @@ "plasmid_name": "R777-E254 Hs.RASSF10-nostop", "sequence-type": "depositor-full", "addgene_id": "70538", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -129856,7 +163706,10 @@ "plasmid_name": "pcDNA5FRT/TO-PLAA-Strep-HA", "sequence-type": "addgene-full", "addgene_id": "113484", - "references": [], + "references": [ + "https://doi.org/10.1074/mcp.RA117.000471", + "https://www.ncbi.nlm.nih.gov/pubmed/29599191" + ], "kit": null, "file": "data/addgene_plasmids/113484.addgene-full.gb" }, @@ -129865,7 +163718,10 @@ "plasmid_name": "pENTR221-WNT1", "sequence-type": "addgene-full", "addgene_id": "79499", - "references": [], + "references": [ + "https://doi.org/10.1038/srep34365", + "https://www.ncbi.nlm.nih.gov/pubmed/27694838" + ], "kit": null, "file": "data/addgene_plasmids/79499.addgene-full.gb" }, @@ -129874,7 +163730,10 @@ "plasmid_name": "pCMV7.1_3xFLAG-TAOK2", "sequence-type": "addgene-full", "addgene_id": "172992", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cellsig.2023.110917", + "https://www.ncbi.nlm.nih.gov/pubmed/37813295" + ], "kit": null, "file": "data/addgene_plasmids/172992.addgene-full.gb" }, @@ -129883,7 +163742,10 @@ "plasmid_name": "pHAGE-PIK3R1-W333R", "sequence-type": "addgene-full", "addgene_id": "116606", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116606.addgene-full.gb" }, @@ -129892,7 +163754,10 @@ "plasmid_name": "pHTSHP-ShhN-Cys", "sequence-type": "addgene-full", "addgene_id": "121136", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2018.10.026", + "https://www.ncbi.nlm.nih.gov/pubmed/30415841" + ], "kit": null, "file": "data/addgene_plasmids/121136.addgene-full.gb" }, @@ -129901,7 +163766,10 @@ "plasmid_name": "pLenti-Paxillin EGFP", "sequence-type": "addgene-full", "addgene_id": "187688", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0069378", + "https://www.ncbi.nlm.nih.gov/pubmed/23990882" + ], "kit": null, "file": "data/addgene_plasmids/187688.addgene-full.gb" }, @@ -129910,7 +163778,10 @@ "plasmid_name": "pcDNA3.2 mir-1-1 reporter hsa-mir17~20", "sequence-type": "depositor-full", "addgene_id": "46671", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2013.01.031", + "https://www.ncbi.nlm.nih.gov/pubmed/23415231" + ], "kit": null, "file": "data/addgene_plasmids/46671.depositor-full.gb" }, @@ -129919,7 +163790,10 @@ "plasmid_name": "pDEST-CMV 3xFLAG-LC3A-GFP", "sequence-type": "addgene-full", "addgene_id": "123106", - "references": [], + "references": [ + "https://doi.org/10.1080/15548627.2019.1569925", + "https://www.ncbi.nlm.nih.gov/pubmed/30661429" + ], "kit": null, "file": "data/addgene_plasmids/123106.addgene-full.gb" }, @@ -129928,7 +163802,10 @@ "plasmid_name": "pZA4", "sequence-type": "addgene-full", "addgene_id": "158482", - "references": [], + "references": [ + "https://doi.org/10.1093/plphys/kiab471", + "https://www.ncbi.nlm.nih.gov/pubmed/34633454" + ], "kit": null, "file": "data/addgene_plasmids/158482.addgene-full.gb" }, @@ -129937,7 +163814,10 @@ "plasmid_name": "RET_Y1062F-SHC", "sequence-type": "addgene-full", "addgene_id": "139620", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2020.100871", + "https://www.ncbi.nlm.nih.gov/pubmed/32062451" + ], "kit": null, "file": "data/addgene_plasmids/139620.addgene-full.gb" }, @@ -129946,7 +163826,10 @@ "plasmid_name": "pDONR221_SLC2A12", "sequence-type": "addgene-full", "addgene_id": "132067", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132067.addgene-full.gb" }, @@ -129955,7 +163838,10 @@ "plasmid_name": "pDL226", "sequence-type": "addgene-full", "addgene_id": "175929", - "references": [], + "references": [ + "https://doi.org/10.1111/tpj.16331", + "https://www.ncbi.nlm.nih.gov/pubmed/37248633" + ], "kit": null, "file": "data/addgene_plasmids/175929.addgene-full.gb" }, @@ -129964,7 +163850,10 @@ "plasmid_name": "TFORF3538", "sequence-type": "depositor-full", "addgene_id": "145014", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/145014.depositor-full.gb" }, @@ -129973,7 +163862,10 @@ "plasmid_name": "R711-X12-566: His6-MBP-tev-Hs.NF1iso2 (1203-1530)", "sequence-type": "addgene-full", "addgene_id": "159580", - "references": [], + "references": [ + "https://doi.org/10.1016/j.celrep.2020.107909", + "https://www.ncbi.nlm.nih.gov/pubmed/32697994" + ], "kit": null, "file": "data/addgene_plasmids/159580.addgene-full.gb" }, @@ -129982,7 +163874,6 @@ "plasmid_name": "R777-E024 Hs.CDK4-nostop", "sequence-type": "depositor-full", "addgene_id": "70308", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -129994,7 +163885,6 @@ "plasmid_name": "Quas:GFPpA;Betacrystallin:CFP", "sequence-type": "depositor-full", "addgene_id": "81181", - "references": [], "kit": null, "file": "data/addgene_plasmids/81181.depositor-full.gb" }, @@ -130003,7 +163893,10 @@ "plasmid_name": "pHAGE-PIK3CG", "sequence-type": "addgene-full", "addgene_id": "116774", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116774.addgene-full.gb" }, @@ -130012,7 +163905,10 @@ "plasmid_name": "pENTR_hEMSY", "sequence-type": "addgene-full", "addgene_id": "125156", - "references": [], + "references": [ + "https://doi.org/10.1038/s41586-019-1210-7", + "https://www.ncbi.nlm.nih.gov/pubmed/31092928" + ], "kit": null, "file": "data/addgene_plasmids/125156.addgene-full.gb" }, @@ -130021,7 +163917,10 @@ "plasmid_name": "pSC34", "sequence-type": "addgene-full", "addgene_id": "104808", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.16.01923", + "https://www.ncbi.nlm.nih.gov/pubmed/28057894" + ], "kit": null, "file": "data/addgene_plasmids/104808.addgene-full.gb" }, @@ -130030,7 +163929,10 @@ "plasmid_name": "pRATIO2112", "sequence-type": "addgene-full", "addgene_id": "141296", - "references": [], + "references": [ + "https://doi.org/10.1002/pld3.231", + "https://www.ncbi.nlm.nih.gov/pubmed/32582876" + ], "kit": null, "file": "data/addgene_plasmids/141296.addgene-full.gb" }, @@ -130039,7 +163941,6 @@ "plasmid_name": "R777-E208 Hs.RAC1-nostop", "sequence-type": "depositor-full", "addgene_id": "70492", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -130051,7 +163952,10 @@ "plasmid_name": "pAG425GAL-EGFP-ccdB", "sequence-type": "depositor-full", "addgene_id": "14321", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -130063,7 +163967,10 @@ "plasmid_name": "pHAGE-PIK3CA-G106V", "sequence-type": "addgene-full", "addgene_id": "116494", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116494.addgene-full.gb" }, @@ -130072,7 +163979,10 @@ "plasmid_name": "pX458-Ef1a-Cas9-H2B-mCherry (gRNA: Neurog2-2)", "sequence-type": "addgene-full", "addgene_id": "159660", - "references": [], + "references": [ + "https://doi.org/10.1242/dev.199399", + "https://www.ncbi.nlm.nih.gov/pubmed/34143204" + ], "kit": null, "file": "data/addgene_plasmids/159660.addgene-full.gb" }, @@ -130081,7 +163991,10 @@ "plasmid_name": "pEF-ENTR-LacZ (710-1)", "sequence-type": "depositor-full", "addgene_id": "17430", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0006529", + "https://www.ncbi.nlm.nih.gov/pubmed/19657394" + ], "kit": null, "file": "data/addgene_plasmids/17430.depositor-full.gb" }, @@ -130090,7 +164003,10 @@ "plasmid_name": "pDONR221_SLC27A1", "sequence-type": "addgene-full", "addgene_id": "132128", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132128.addgene-full.gb" }, @@ -130099,7 +164015,10 @@ "plasmid_name": "pWS1037", "sequence-type": "addgene-full", "addgene_id": "123049", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2019.02.023", + "https://www.ncbi.nlm.nih.gov/pubmed/30955892" + ], "kit": null, "file": "data/addgene_plasmids/123049.addgene-full.gb" }, @@ -130108,7 +164027,10 @@ "plasmid_name": "pCWX-R4-DEST-R2-PGR65", "sequence-type": "depositor-full", "addgene_id": "45953", - "references": [], + "references": [ + "https://doi.org/10.1089/hum.2010.179", + "https://www.ncbi.nlm.nih.gov/pubmed/21761975" + ], "kit": null, "file": "data/addgene_plasmids/45953.depositor-full.gb" }, @@ -130117,7 +164039,10 @@ "plasmid_name": "pDONR221-OSF-TRIM5-21R(1-300)", "sequence-type": "depositor-full", "addgene_id": "79029", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.16269", + "https://www.ncbi.nlm.nih.gov/pubmed/27253068" + ], "kit": null, "file": "data/addgene_plasmids/79029.depositor-full.gb" }, @@ -130126,7 +164051,10 @@ "plasmid_name": "pCFJ355 - MCS(ttTi14024, X)", "sequence-type": "depositor-full", "addgene_id": "34870", - "references": [], + "references": [ + "https://doi.org/10.1038/nmeth.1865", + "https://www.ncbi.nlm.nih.gov/pubmed/22290181" + ], "kit": null, "file": "data/addgene_plasmids/34870.depositor-full.gb" }, @@ -130147,7 +164075,10 @@ "plasmid_name": "pLX311 ARHGAP30", "sequence-type": "addgene-full", "addgene_id": "117739", - "references": [], + "references": [ + "https://doi.org/10.1158/1541-7786.MCR-18-0963", + "https://www.ncbi.nlm.nih.gov/pubmed/30777879" + ], "kit": null, "file": "data/addgene_plasmids/117739.addgene-full.gb" }, @@ -130156,7 +164087,10 @@ "plasmid_name": "LIIc F 2-3", "sequence-type": "depositor-full", "addgene_id": "54368", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0088218", + "https://www.ncbi.nlm.nih.gov/pubmed/24551083" + ], "kit": null, "file": "data/addgene_plasmids/54368.depositor-full.gb" }, @@ -130165,7 +164099,10 @@ "plasmid_name": "pDONR221-SLC14A2_STOP", "sequence-type": "addgene-full", "addgene_id": "161431", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161431.addgene-full.gb" }, @@ -130174,7 +164111,10 @@ "plasmid_name": "pENTR_L1-YFP-miniTurbo-L2", "sequence-type": "addgene-full", "addgene_id": "127352", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.47864", + "https://www.ncbi.nlm.nih.gov/pubmed/31535972" + ], "kit": null, "file": "data/addgene_plasmids/127352.addgene-full.gb" }, @@ -130183,7 +164123,6 @@ "plasmid_name": "R777-E337 Hs.STK3", "sequence-type": "depositor-full", "addgene_id": "70621", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -130195,7 +164134,10 @@ "plasmid_name": "pMDJ13 - pEXP[Peft-3 | tagRFP-T (NLS) | tbb-2 UTR]", "sequence-type": "addgene-full", "addgene_id": "159800", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-19898-0", + "https://www.ncbi.nlm.nih.gov/pubmed/33298957" + ], "kit": null, "file": "data/addgene_plasmids/159800.addgene-full.gb" }, @@ -130204,7 +164146,10 @@ "plasmid_name": "PB-Gata2", "sequence-type": "depositor-full", "addgene_id": "60665", - "references": [], + "references": [ + "https://doi.org/10.1016/j.stemcr.2014.10.003", + "https://www.ncbi.nlm.nih.gov/pubmed/25458896" + ], "kit": null, "file": "data/addgene_plasmids/60665.depositor-full.gb" }, @@ -130213,7 +164158,10 @@ "plasmid_name": "pAG414GPD-ccdB-EGFP", "sequence-type": "depositor-full", "addgene_id": "14192", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -130225,7 +164173,10 @@ "plasmid_name": "pENTR1a-jAspSnFR3", "sequence-type": "addgene-full", "addgene_id": "203460", - "references": [], + "references": [ + "https://doi.org/10.7554/eLife.90024", + "https://www.ncbi.nlm.nih.gov/pubmed/38393319" + ], "kit": null, "file": "data/addgene_plasmids/203460.addgene-full.gb" }, @@ -130234,7 +164185,10 @@ "plasmid_name": "plx304-PHB-V5", "sequence-type": "addgene-full", "addgene_id": "122230", - "references": [], + "references": [ + "https://doi.org/10.1172/jci.insight.127098", + "https://www.ncbi.nlm.nih.gov/pubmed/31391345" + ], "kit": null, "file": "data/addgene_plasmids/122230.addgene-full.gb" }, @@ -130243,7 +164197,10 @@ "plasmid_name": "E1_pENTR_L1-L4_NN_G1333-DddtoxA-N", "sequence-type": "addgene-full", "addgene_id": "171729", - "references": [], + "references": [ + "https://doi.org/10.1038/s41477-021-00954-6", + "https://www.ncbi.nlm.nih.gov/pubmed/34211131" + ], "kit": null, "file": "data/addgene_plasmids/171729.addgene-full.gb" }, @@ -130252,7 +164209,10 @@ "plasmid_name": "pHAGE-PIK3CA-R93W", "sequence-type": "addgene-full", "addgene_id": "116540", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116540.addgene-full.gb" }, @@ -130261,7 +164221,6 @@ "plasmid_name": "R777-E062 Hs.ERBB2-nostop", "sequence-type": "depositor-full", "addgene_id": "70346", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -130273,7 +164232,10 @@ "plasmid_name": "pDONR221_OCA2", "sequence-type": "addgene-full", "addgene_id": "132253", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/132253.addgene-full.gb" }, @@ -130282,7 +164244,10 @@ "plasmid_name": "pYPQ141A", "sequence-type": "depositor-full", "addgene_id": "69290", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.15.00636", + "https://www.ncbi.nlm.nih.gov/pubmed/26297141" + ], "kit": null, "file": "data/addgene_plasmids/69290.depositor-full.gb" }, @@ -130291,7 +164256,10 @@ "plasmid_name": "APP_pcDNA6.2/EmGFP-Bsd", "sequence-type": "addgene-full", "addgene_id": "176954", - "references": [], + "references": [ + "https://doi.org/10.1242/dmm.049712", + "https://www.ncbi.nlm.nih.gov/pubmed/36995257" + ], "kit": null, "file": "data/addgene_plasmids/176954.addgene-full.gb" }, @@ -130300,7 +164268,10 @@ "plasmid_name": "pDONR223_GSK3B_WT", "sequence-type": "addgene-full", "addgene_id": "82126", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": null, "file": "data/addgene_plasmids/82126.addgene-full.gb" }, @@ -130309,7 +164280,10 @@ "plasmid_name": "MAC_N_NFAC3", "sequence-type": "addgene-full", "addgene_id": "167781", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-022-28341-5", + "https://www.ncbi.nlm.nih.gov/pubmed/35140242" + ], "kit": null, "file": "data/addgene_plasmids/167781.addgene-full.gb" }, @@ -130318,7 +164292,10 @@ "plasmid_name": "pInducer 21-3xFlag-hMEFV-S580X", "sequence-type": "addgene-full", "addgene_id": "195474", - "references": [], + "references": [ + "https://doi.org/10.1038/s41419-023-05745-9", + "https://www.ncbi.nlm.nih.gov/pubmed/36966139" + ], "kit": null, "file": "data/addgene_plasmids/195474.addgene-full.gb" }, @@ -130327,7 +164304,10 @@ "plasmid_name": "pHAGE-eGFP-NDP52", "sequence-type": "addgene-full", "addgene_id": "175749", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2015.08.016", + "https://www.ncbi.nlm.nih.gov/pubmed/26365381" + ], "kit": null, "file": "data/addgene_plasmids/175749.addgene-full.gb" }, @@ -130336,7 +164316,10 @@ "plasmid_name": "pENTR223-BDLF1", "sequence-type": "addgene-full", "addgene_id": "195794", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195794.addgene-full.gb" }, @@ -130345,7 +164328,10 @@ "plasmid_name": "C514-E15: attB5r-RU5u-His6-MBP-nostop-attB1r", "sequence-type": "addgene-full", "addgene_id": "162957", - "references": [], + "references": [ + "https://doi.org/10.1007/978-1-62703-764-8_14", + "https://www.ncbi.nlm.nih.gov/pubmed/24395366" + ], "kit": { "name": "FNL Combinatorial Cloning Platform", "url": "https://www.addgene.org/1000000211/" @@ -130357,7 +164343,10 @@ "plasmid_name": "pGWB543", "sequence-type": "depositor-full", "addgene_id": "74877", - "references": [], + "references": [ + "https://doi.org/10.1271/bbb.70216", + "https://www.ncbi.nlm.nih.gov/pubmed/17690442" + ], "kit": null, "file": "data/addgene_plasmids/74877.depositor-full.gb" }, @@ -130366,7 +164355,10 @@ "plasmid_name": "GFP-STAM1", "sequence-type": "addgene-full", "addgene_id": "164628", - "references": [], + "references": [ + "https://doi.org/10.1126/sciadv.abb2454", + "https://www.ncbi.nlm.nih.gov/pubmed/33177079" + ], "kit": null, "file": "data/addgene_plasmids/164628.addgene-full.gb" }, @@ -130375,7 +164367,10 @@ "plasmid_name": "pENTR223-BRRF2", "sequence-type": "addgene-full", "addgene_id": "195820", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.0702332104", + "https://www.ncbi.nlm.nih.gov/pubmed/17446270" + ], "kit": null, "file": "data/addgene_plasmids/195820.addgene-full.gb" }, @@ -130384,7 +164379,10 @@ "plasmid_name": "pENTR-L3-Cas9n-L2", "sequence-type": "addgene-full", "addgene_id": "141039", - "references": [], + "references": [ + "https://doi.org/10.1371/journal.pone.0221164", + "https://www.ncbi.nlm.nih.gov/pubmed/31454364" + ], "kit": null, "file": "data/addgene_plasmids/141039.addgene-full.gb" }, @@ -130393,7 +164391,6 @@ "plasmid_name": "pLIX403-EBFP2-ccdB-G418", "sequence-type": "addgene-full", "addgene_id": "158556", - "references": [], "kit": null, "file": "data/addgene_plasmids/158556.addgene-full.gb" }, @@ -130402,7 +164399,10 @@ "plasmid_name": "TFORF3015", "sequence-type": "addgene-full", "addgene_id": "144491", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144491.addgene-full.gb" }, @@ -130411,7 +164411,10 @@ "plasmid_name": "pDONR223 HCoV-OC43 NSP12_stop", "sequence-type": "addgene-full", "addgene_id": "168717", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168717.addgene-full.gb" }, @@ -130420,7 +164423,10 @@ "plasmid_name": "pDONR221-SLC2A3_STOP", "sequence-type": "addgene-full", "addgene_id": "161280", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161280.addgene-full.gb" }, @@ -130429,7 +164435,10 @@ "plasmid_name": "5'-3xFLAG Gatad2a+exon minimal CMV pCDNA5", "sequence-type": "addgene-full", "addgene_id": "212050", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2023.10.034", + "https://www.ncbi.nlm.nih.gov/pubmed/38065061" + ], "kit": null, "file": "data/addgene_plasmids/212050.addgene-full.gb" }, @@ -130438,7 +164447,10 @@ "plasmid_name": "mCherry pBSDONR P4r-P2", "sequence-type": "addgene-full", "addgene_id": "121528", - "references": [], + "references": [ + "https://doi.org/10.1104/pp.110.171785", + "https://www.ncbi.nlm.nih.gov/pubmed/21343429" + ], "kit": null, "file": "data/addgene_plasmids/121528.addgene-full.gb" }, @@ -130447,7 +164459,10 @@ "plasmid_name": "pDONR223_DNMT3A_p.G746V", "sequence-type": "addgene-full", "addgene_id": "81545", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -130459,7 +164474,10 @@ "plasmid_name": "pDONR221-SLC25A40_STOP", "sequence-type": "addgene-full", "addgene_id": "161160", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161160.addgene-full.gb" }, @@ -130468,7 +164486,10 @@ "plasmid_name": "TFORF3295", "sequence-type": "addgene-full", "addgene_id": "144771", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144771.addgene-full.gb" }, @@ -130477,7 +164498,10 @@ "plasmid_name": "actc1b-mKate2-rab7a", "sequence-type": "addgene-full", "addgene_id": "109655", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109655.addgene-full.gb" }, @@ -130486,7 +164510,10 @@ "plasmid_name": "pDONR221_SLC26A10", "sequence-type": "addgene-full", "addgene_id": "131984", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131984.addgene-full.gb" }, @@ -130495,7 +164522,10 @@ "plasmid_name": "pDEST-N2H-N2", "sequence-type": "addgene-full", "addgene_id": "125548", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-019-11809-2", + "https://www.ncbi.nlm.nih.gov/pubmed/31467278" + ], "kit": null, "file": "data/addgene_plasmids/125548.addgene-full.gb" }, @@ -130504,7 +164534,10 @@ "plasmid_name": "pDONR223_TPK1_p.P152T", "sequence-type": "addgene-full", "addgene_id": "82797", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82797.addgene-full.gb" }, @@ -130513,7 +164546,10 @@ "plasmid_name": "pDONR223_BRAF_p.A762E", "sequence-type": "addgene-full", "addgene_id": "82823", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82823.addgene-full.gb" }, @@ -130522,7 +164558,10 @@ "plasmid_name": "pME-Gal4", "sequence-type": "depositor-full", "addgene_id": "53366", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.22734", + "https://www.ncbi.nlm.nih.gov/pubmed/21905164" + ], "kit": null, "file": "data/addgene_plasmids/53366.depositor-full.gb" }, @@ -130531,7 +164570,10 @@ "plasmid_name": "pDONR221-kcnj6", "sequence-type": "addgene-full", "addgene_id": "173133", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.425", + "https://www.ncbi.nlm.nih.gov/pubmed/34558132" + ], "kit": null, "file": "data/addgene_plasmids/173133.addgene-full.gb" }, @@ -130540,7 +164582,6 @@ "plasmid_name": "pKLV-gRNA-CTBP2-MGMT_1", "sequence-type": "addgene-full", "addgene_id": "136419", - "references": [], "kit": null, "file": "data/addgene_plasmids/136419.addgene-full.gb" }, @@ -130549,7 +164590,10 @@ "plasmid_name": "MATN2_pLX307", "sequence-type": "addgene-full", "addgene_id": "98351", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cels.2016.09.001", + "https://www.ncbi.nlm.nih.gov/pubmed/27684187" + ], "kit": null, "file": "data/addgene_plasmids/98351.addgene-full.gb" }, @@ -130558,7 +164602,6 @@ "plasmid_name": "pDest-565", "sequence-type": "addgene-full", "addgene_id": "11520", - "references": [], "kit": null, "file": "data/addgene_plasmids/11520.addgene-full.gb" }, @@ -130567,7 +164610,10 @@ "plasmid_name": "pLenti_EF1a_EV", "sequence-type": "addgene-full", "addgene_id": "183116", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.2120403119", + "https://www.ncbi.nlm.nih.gov/pubmed/35357972" + ], "kit": null, "file": "data/addgene_plasmids/183116.addgene-full.gb" }, @@ -130576,7 +164622,6 @@ "plasmid_name": "UBI10:RFP-RabG3B-WT", "sequence-type": "addgene-full", "addgene_id": "102369", - "references": [], "kit": null, "file": "data/addgene_plasmids/102369.addgene-full.gb" }, @@ -130585,7 +164630,10 @@ "plasmid_name": "MAC_N_COMMD1", "sequence-type": "addgene-full", "addgene_id": "209674", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-024-01246-1", + "https://www.ncbi.nlm.nih.gov/pubmed/38459129" + ], "kit": null, "file": "data/addgene_plasmids/209674.addgene-full.gb" }, @@ -130594,7 +164642,6 @@ "plasmid_name": "pLenti-PGK-CXCR4 (neo)", "sequence-type": "addgene-full", "addgene_id": "192077", - "references": [], "kit": null, "file": "data/addgene_plasmids/192077.addgene-full.gb" }, @@ -130603,7 +164650,6 @@ "plasmid_name": "pDEST-Spe4-RfA-mVenus-stop", "sequence-type": "addgene-full", "addgene_id": "186394", - "references": [], "kit": null, "file": "data/addgene_plasmids/186394.addgene-full.gb" }, @@ -130612,7 +164658,10 @@ "plasmid_name": "pNL(CMV)GLuc/CMV/WPREdU3", "sequence-type": "addgene-full", "addgene_id": "136999", - "references": [], + "references": [ + "https://doi.org/10.1089/hgtb.2012.054", + "https://www.ncbi.nlm.nih.gov/pubmed/22612657" + ], "kit": null, "file": "data/addgene_plasmids/136999.addgene-full.gb" }, @@ -130621,7 +164670,10 @@ "plasmid_name": "LA301: pMVP (L3-L2) P2A-Hygro + WPRE", "sequence-type": "addgene-full", "addgene_id": "121787", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121787.addgene-full.gb" }, @@ -130630,7 +164682,10 @@ "plasmid_name": "KO101: pMAGIC (R4-R3) NLS-x dCas9(3.7)-NLS-Dnmt3a3L", "sequence-type": "addgene-full", "addgene_id": "121833", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121833.addgene-full.gb" }, @@ -130639,7 +164694,6 @@ "plasmid_name": "p41Neo 3-F GW", "sequence-type": "depositor-full", "addgene_id": "58554", - "references": [], "kit": null, "file": "data/addgene_plasmids/58554.depositor-full.gb" }, @@ -130648,7 +164702,10 @@ "plasmid_name": "pME-p3E-GLRX-roGFP2", "sequence-type": "addgene-full", "addgene_id": "194288", - "references": [], + "references": [ + "https://doi.org/10.1016/j.devcel.2023.02.004", + "https://www.ncbi.nlm.nih.gov/pubmed/36858041" + ], "kit": null, "file": "data/addgene_plasmids/194288.addgene-full.gb" }, @@ -130657,7 +164714,10 @@ "plasmid_name": "pDONR223 HCoV-NL63 NSP10_nostop", "sequence-type": "addgene-full", "addgene_id": "168658", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168658.addgene-full.gb" }, @@ -130666,7 +164726,10 @@ "plasmid_name": "pYPQ144-ZmUbi-pT", "sequence-type": "addgene-full", "addgene_id": "138108", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-021-22330-w", + "https://www.ncbi.nlm.nih.gov/pubmed/33782402" + ], "kit": null, "file": "data/addgene_plasmids/138108.addgene-full.gb" }, @@ -130675,7 +164738,9 @@ "plasmid_name": "pPB-cT3G-cERP2-TET3", "sequence-type": "addgene-full", "addgene_id": "222574", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222574.addgene-full.gb" }, @@ -130684,7 +164749,10 @@ "plasmid_name": "pDONR221-SLCO1B1_STOP", "sequence-type": "addgene-full", "addgene_id": "161354", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/161354.addgene-full.gb" }, @@ -130693,7 +164761,9 @@ "plasmid_name": "pME-rox-nls-mCherry-V5-2xStop-rox (JDW 1167)", "sequence-type": "addgene-full", "addgene_id": "224524", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.07.13.603267" + ], "kit": null, "file": "data/addgene_plasmids/224524.addgene-full.gb" }, @@ -130702,7 +164772,10 @@ "plasmid_name": "MultiMate-HITI-2c ACTB", "sequence-type": "addgene-full", "addgene_id": "206267", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gkac587", + "https://www.ncbi.nlm.nih.gov/pubmed/35801912" + ], "kit": null, "file": "data/addgene_plasmids/206267.addgene-full.gb" }, @@ -130711,7 +164784,10 @@ "plasmid_name": "pDONR223_RBM10_WT", "sequence-type": "addgene-full", "addgene_id": "81771", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -130735,7 +164811,10 @@ "plasmid_name": "pENTR D-TOPO-C3_37", "sequence-type": "depositor-full", "addgene_id": "60278", - "references": [], + "references": [ + "https://doi.org/10.1038/ng.2870", + "https://www.ncbi.nlm.nih.gov/pubmed/24413736" + ], "kit": null, "file": "data/addgene_plasmids/60278.depositor-full.gb" }, @@ -130744,7 +164823,10 @@ "plasmid_name": "TFORF3069", "sequence-type": "addgene-full", "addgene_id": "144545", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144545.addgene-full.gb" }, @@ -130753,7 +164835,10 @@ "plasmid_name": "pMM2_10", "sequence-type": "addgene-full", "addgene_id": "183059", - "references": [], + "references": [ + "https://doi.org/10.1093/femsyr/foab049", + "https://www.ncbi.nlm.nih.gov/pubmed/34477863" + ], "kit": null, "file": "data/addgene_plasmids/183059.addgene-full.gb" }, @@ -130762,7 +164847,9 @@ "plasmid_name": "pDONR221-SCARB2(v1)", "sequence-type": "addgene-full", "addgene_id": "166206", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482120" + ], "kit": null, "file": "data/addgene_plasmids/166206.addgene-full.gb" }, @@ -130771,7 +164858,10 @@ "plasmid_name": "pHAGE-DDR2-R473H", "sequence-type": "addgene-full", "addgene_id": "116225", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116225.addgene-full.gb" }, @@ -130780,7 +164870,10 @@ "plasmid_name": "TFORF3435", "sequence-type": "addgene-full", "addgene_id": "144911", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144911.addgene-full.gb" }, @@ -130789,7 +164882,9 @@ "plasmid_name": "pMpGWB407", "sequence-type": "depositor-full", "addgene_id": "68672", - "references": [], + "references": [ + "https://www.ncbi.nlm.nih.gov/pubmed/26406247" + ], "kit": null, "file": "data/addgene_plasmids/68672.depositor-full.gb" }, @@ -130798,7 +164893,10 @@ "plasmid_name": "pDONR223_EYS_p.C554S", "sequence-type": "addgene-full", "addgene_id": "81491", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -130810,7 +164908,10 @@ "plasmid_name": "pAG414GAL-ccdB-EYFP", "sequence-type": "depositor-full", "addgene_id": "14215", - "references": [], + "references": [ + "https://doi.org/10.1002/yea.1502", + "https://www.ncbi.nlm.nih.gov/pubmed/17583893" + ], "kit": { "name": "Yeast Gateway Kit", "url": "https://www.addgene.org/1000000011/" @@ -130822,7 +164923,10 @@ "plasmid_name": "pENTR-3xFLAG-YAP1-S127A", "sequence-type": "depositor-full", "addgene_id": "42239", - "references": [], + "references": [ + "https://doi.org/10.1073/pnas.1116136109", + "https://www.ncbi.nlm.nih.gov/pubmed/22308401" + ], "kit": null, "file": "data/addgene_plasmids/42239.depositor-full.gb" }, @@ -130831,7 +164935,10 @@ "plasmid_name": "pDONR223_PTEN_p.K6N", "sequence-type": "addgene-full", "addgene_id": "81698", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -130843,7 +164950,10 @@ "plasmid_name": "pCM3.09", "sequence-type": "depositor-full", "addgene_id": "19406", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2008.08.013", + "https://www.ncbi.nlm.nih.gov/pubmed/18818082" + ], "kit": null, "file": "data/addgene_plasmids/19406.depositor-full.gb" }, @@ -130852,7 +164962,10 @@ "plasmid_name": "pDONR223_DCAF8_WT", "sequence-type": "addgene-full", "addgene_id": "82885", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82885.addgene-full.gb" }, @@ -130861,7 +164974,10 @@ "plasmid_name": "pENTR4-EGFP_opt", "sequence-type": "addgene-full", "addgene_id": "106334", - "references": [], + "references": [ + "https://doi.org/10.1038/nature21690", + "https://www.ncbi.nlm.nih.gov/pubmed/28297718" + ], "kit": null, "file": "data/addgene_plasmids/106334.addgene-full.gb" }, @@ -130870,7 +164986,10 @@ "plasmid_name": "pDONR223_STAG2_p.R541K", "sequence-type": "addgene-full", "addgene_id": "81578", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -130882,7 +165001,10 @@ "plasmid_name": "p3E-rab14", "sequence-type": "addgene-full", "addgene_id": "109668", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109668.addgene-full.gb" }, @@ -130891,7 +165013,10 @@ "plasmid_name": "p5E-elavl3", "sequence-type": "depositor-full", "addgene_id": "75025", - "references": [], + "references": [ + "https://doi.org/10.1089/zeb.2016.1321", + "https://www.ncbi.nlm.nih.gov/pubmed/27631880" + ], "kit": { "name": "Zebrafish Tol2 Gateway-compatible Kit for Neurodegenerative Disorders", "url": "https://www.addgene.org/1000000087/" @@ -130903,7 +165028,10 @@ "plasmid_name": "pSLIK NPIPB11-FLAG zeo", "sequence-type": "addgene-full", "addgene_id": "192331", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-37914-x", + "https://www.ncbi.nlm.nih.gov/pubmed/37055441" + ], "kit": null, "file": "data/addgene_plasmids/192331.addgene-full.gb" }, @@ -130912,7 +165040,10 @@ "plasmid_name": "pDONR223 SARS-CoV-2 S 24nt-del", "sequence-type": "addgene-full", "addgene_id": "153952", - "references": [], + "references": [ + "https://doi.org/10.1534/g3.120.401554", + "https://www.ncbi.nlm.nih.gov/pubmed/32763951" + ], "kit": null, "file": "data/addgene_plasmids/153952.addgene-full.gb" }, @@ -130921,7 +165052,10 @@ "plasmid_name": "pLKO.DEST.puro", "sequence-type": "depositor-full", "addgene_id": "32682", - "references": [], + "references": [ + "https://doi.org/10.1186/1472-6750-11-24", + "https://www.ncbi.nlm.nih.gov/pubmed/21418658" + ], "kit": null, "file": "data/addgene_plasmids/32682.depositor-full.gb" }, @@ -130930,7 +165064,10 @@ "plasmid_name": "pLenti CMV TRE3G Neo GFP-Lamin A wildtype", "sequence-type": "addgene-full", "addgene_id": "118709", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ymeth.2015.08.024", + "https://www.ncbi.nlm.nih.gov/pubmed/26341717" + ], "kit": null, "file": "data/addgene_plasmids/118709.addgene-full.gb" }, @@ -130939,7 +165076,6 @@ "plasmid_name": "pHAGE mCherry-Rab11A Q70L", "sequence-type": "addgene-full", "addgene_id": "228038", - "references": [], "kit": null, "file": "data/addgene_plasmids/228038.addgene-full.gb" }, @@ -130948,7 +165084,10 @@ "plasmid_name": "SERPINH1", "sequence-type": "addgene-full", "addgene_id": "155999", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155999.addgene-full.gb" }, @@ -130957,7 +165096,10 @@ "plasmid_name": "pLD-puro-Cc-PARK7H126A-VA", "sequence-type": "addgene-full", "addgene_id": "115185", - "references": [], + "references": [ + "https://doi.org/10.1016/j.isci.2019.08.057", + "https://www.ncbi.nlm.nih.gov/pubmed/31536960" + ], "kit": null, "file": "data/addgene_plasmids/115185.addgene-full.gb" }, @@ -130966,7 +165108,6 @@ "plasmid_name": "pcDNA5-FRT-TOgw-C-mECFP", "sequence-type": "addgene-full", "addgene_id": "223950", - "references": [], "kit": null, "file": "data/addgene_plasmids/223950.addgene-full.gb" }, @@ -130975,7 +165116,10 @@ "plasmid_name": "pExp_CAG:EYFP", "sequence-type": "depositor-full", "addgene_id": "51791", - "references": [], + "references": [ + "https://doi.org/10.1021/sb500263b", + "https://www.ncbi.nlm.nih.gov/pubmed/25369267" + ], "kit": null, "file": "data/addgene_plasmids/51791.depositor-full.gb" }, @@ -130984,7 +165128,10 @@ "plasmid_name": "pDONR221_SLC15A5", "sequence-type": "addgene-full", "addgene_id": "131922", - "references": [], + "references": [ + "https://doi.org/10.1038/d41573-020-00056-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32265506" + ], "kit": null, "file": "data/addgene_plasmids/131922.addgene-full.gb" }, @@ -130993,7 +165140,6 @@ "plasmid_name": "pLenti6.3/NS5", "sequence-type": "addgene-full", "addgene_id": "120843", - "references": [], "kit": null, "file": "data/addgene_plasmids/120843.addgene-full.gb" }, @@ -131002,7 +165148,10 @@ "plasmid_name": "TFORF3387", "sequence-type": "addgene-full", "addgene_id": "144863", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144863.addgene-full.gb" }, @@ -131011,7 +165160,10 @@ "plasmid_name": "pDONR223-ZNF576", "sequence-type": "addgene-full", "addgene_id": "88074", - "references": [], + "references": [ + "https://doi.org/10.1038/s41587-020-0742-6", + "https://www.ncbi.nlm.nih.gov/pubmed/33257861" + ], "kit": null, "file": "data/addgene_plasmids/88074.addgene-full.gb" }, @@ -131020,7 +165172,6 @@ "plasmid_name": "R777-E112 Hs.IRS2-nostop", "sequence-type": "depositor-full", "addgene_id": "70396", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -131032,7 +165183,10 @@ "plasmid_name": "pHAGE-ERBB2-V777_G778insGSP", "sequence-type": "addgene-full", "addgene_id": "116357", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116357.addgene-full.gb" }, @@ -131041,7 +165195,10 @@ "plasmid_name": "pcDNA3_SP-DRD1-V2R-NTEV-TCS-GV-2xHA", "sequence-type": "addgene-full", "addgene_id": "194361", - "references": [], + "references": [ + "https://doi.org/10.3390/bios13010048", + "https://www.ncbi.nlm.nih.gov/pubmed/36671883" + ], "kit": null, "file": "data/addgene_plasmids/194361.addgene-full.gb" }, @@ -131050,7 +165207,10 @@ "plasmid_name": "RBM41", "sequence-type": "addgene-full", "addgene_id": "155902", - "references": [], + "references": [ + "https://doi.org/10.1038/s41594-020-0477-6", + "https://www.ncbi.nlm.nih.gov/pubmed/32807991" + ], "kit": null, "file": "data/addgene_plasmids/155902.addgene-full.gb" }, @@ -131059,7 +165219,10 @@ "plasmid_name": "pEBTetBl-CLIP-Cep70", "sequence-type": "addgene-full", "addgene_id": "136870", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cub.2012.12.030", + "https://www.ncbi.nlm.nih.gov/pubmed/23333316" + ], "kit": null, "file": "data/addgene_plasmids/136870.addgene-full.gb" }, @@ -131068,7 +165231,10 @@ "plasmid_name": "366 pTol2-CherryDest", "sequence-type": "depositor-full", "addgene_id": "73487", - "references": [], + "references": [ + "https://doi.org/10.1002/dvdy.21354", + "https://www.ncbi.nlm.nih.gov/pubmed/17948311" + ], "kit": null, "file": "data/addgene_plasmids/73487.depositor-full.gb" }, @@ -131077,7 +165243,10 @@ "plasmid_name": "pDONR223_CD70_p.D165Y", "sequence-type": "addgene-full", "addgene_id": "81603", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -131089,7 +165258,10 @@ "plasmid_name": "actc1b-mKate2-EHD1a-dEH", "sequence-type": "addgene-full", "addgene_id": "109513", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109513.addgene-full.gb" }, @@ -131098,7 +165270,10 @@ "plasmid_name": "TFORF2961", "sequence-type": "addgene-full", "addgene_id": "144437", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144437.addgene-full.gb" }, @@ -131107,7 +165282,10 @@ "plasmid_name": "pGL3-MTS-G3635A-R16-Q2L7-T2176N-UGI-Puro", "sequence-type": "addgene-full", "addgene_id": "209649", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-023-42359-3", + "https://www.ncbi.nlm.nih.gov/pubmed/37857619" + ], "kit": null, "file": "data/addgene_plasmids/209649.addgene-full.gb" }, @@ -131116,7 +165294,10 @@ "plasmid_name": "pIE2-AD", "sequence-type": "depositor-full", "addgene_id": "21603", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ab.2009.05.033", + "https://www.ncbi.nlm.nih.gov/pubmed/19481053" + ], "kit": null, "file": "data/addgene_plasmids/21603.depositor-full.gb" }, @@ -131125,7 +165306,10 @@ "plasmid_name": "pAG416-Gal-PR50", "sequence-type": "addgene-full", "addgene_id": "84901", - "references": [], + "references": [ + "https://doi.org/10.1038/nn.4085", + "https://www.ncbi.nlm.nih.gov/pubmed/26308983" + ], "kit": null, "file": "data/addgene_plasmids/84901.addgene-full.gb" }, @@ -131134,7 +165318,10 @@ "plasmid_name": "pDONR223_SMAD4_p.R97H", "sequence-type": "addgene-full", "addgene_id": "81437", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -131146,7 +165333,10 @@ "plasmid_name": "pEntry_HCoV-HKU1-Membrane", "sequence-type": "depositor-full", "addgene_id": "168905", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168905.depositor-full.gb" }, @@ -131155,7 +165345,10 @@ "plasmid_name": "pAC1813_pCR8-gSMN2-DN1", "sequence-type": "addgene-full", "addgene_id": "118646", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-16806-4", + "https://www.ncbi.nlm.nih.gov/pubmed/32532987" + ], "kit": null, "file": "data/addgene_plasmids/118646.addgene-full.gb" }, @@ -131164,7 +165357,10 @@ "plasmid_name": "p3E-rab9a", "sequence-type": "addgene-full", "addgene_id": "109727", - "references": [], + "references": [ + "https://doi.org/10.1038/s41467-020-17486-w", + "https://www.ncbi.nlm.nih.gov/pubmed/32709891" + ], "kit": null, "file": "data/addgene_plasmids/109727.addgene-full.gb" }, @@ -131173,7 +165369,10 @@ "plasmid_name": "pDONR223 HCoV-HKU1 N_nostop", "sequence-type": "addgene-full", "addgene_id": "168585", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkad105", + "https://www.ncbi.nlm.nih.gov/pubmed/37267226" + ], "kit": null, "file": "data/addgene_plasmids/168585.addgene-full.gb" }, @@ -131182,7 +165381,10 @@ "plasmid_name": "TFORF3127", "sequence-type": "addgene-full", "addgene_id": "144603", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144603.addgene-full.gb" }, @@ -131191,7 +165393,9 @@ "plasmid_name": "pAG416GAL-EGFP", "sequence-type": "addgene-full", "addgene_id": "166140", - "references": [], + "references": [ + "https://doi.org/10.1101/2022.02.26.482115" + ], "kit": null, "file": "data/addgene_plasmids/166140.addgene-full.gb" }, @@ -131200,7 +165404,10 @@ "plasmid_name": "pHAGE-EGFR-P589L", "sequence-type": "addgene-full", "addgene_id": "116283", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116283.addgene-full.gb" }, @@ -131209,7 +165416,10 @@ "plasmid_name": "pHAGE-BRAF-H269Y", "sequence-type": "addgene-full", "addgene_id": "116163", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116163.addgene-full.gb" }, @@ -131218,7 +165428,6 @@ "plasmid_name": "pVP16-tev-PRT1-C29A", "sequence-type": "addgene-full", "addgene_id": "83407", - "references": [], "kit": null, "file": "data/addgene_plasmids/83407.addgene-full.gb" }, @@ -131227,7 +165436,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-WEE2_IDG-K", "sequence-type": "addgene-full", "addgene_id": "189895", - "references": [], "kit": null, "file": "data/addgene_plasmids/189895.addgene-full.gb" }, @@ -131236,7 +165444,9 @@ "plasmid_name": "pPB-cT3G-cERP2-ANHX", "sequence-type": "addgene-full", "addgene_id": "222549", - "references": [], + "references": [ + "https://doi.org/10.1101/2024.05.31.596483" + ], "kit": null, "file": "data/addgene_plasmids/222549.addgene-full.gb" }, @@ -131245,7 +165455,6 @@ "plasmid_name": "pWALIUM10-V5-TurboID-GW", "sequence-type": "addgene-full", "addgene_id": "196285", - "references": [], "kit": null, "file": "data/addgene_plasmids/196285.addgene-full.gb" }, @@ -131254,7 +165463,10 @@ "plasmid_name": "pEZYeGFP-SARS-CoV-2E GGG", "sequence-type": "addgene-full", "addgene_id": "224582", - "references": [], + "references": [ + "https://doi.org/10.3390/ijms241612793", + "https://www.ncbi.nlm.nih.gov/pubmed/37628973" + ], "kit": null, "file": "data/addgene_plasmids/224582.addgene-full.gb" }, @@ -131263,7 +165475,10 @@ "plasmid_name": "pDONR223_FAM116A_WT", "sequence-type": "addgene-full", "addgene_id": "81863", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-16-0160", + "https://www.ncbi.nlm.nih.gov/pubmed/27147599" + ], "kit": { "name": "Broad Target Accelerator Plasmid Collections", "url": "https://www.addgene.org/1000000103/" @@ -131275,7 +165490,10 @@ "plasmid_name": "pENTR{KDRT-RC}", "sequence-type": "addgene-full", "addgene_id": "182166", - "references": [], + "references": [ + "https://doi.org/10.1093/g3journal/jkac030", + "https://www.ncbi.nlm.nih.gov/pubmed/35143616" + ], "kit": null, "file": "data/addgene_plasmids/182166.addgene-full.gb" }, @@ -131284,7 +165502,10 @@ "plasmid_name": "p7140 pHAGE-P-CMVt-N-HA-GAW-EME1", "sequence-type": "addgene-full", "addgene_id": "100150", - "references": [], + "references": [ + "https://doi.org/10.1021/pr501005v", + "https://www.ncbi.nlm.nih.gov/pubmed/25476789" + ], "kit": null, "file": "data/addgene_plasmids/100150.addgene-full.gb" }, @@ -131293,7 +165514,10 @@ "plasmid_name": "pFRT_TO_eGFP_CELF1", "sequence-type": "addgene-full", "addgene_id": "106100", - "references": [], + "references": [ + "https://doi.org/10.1016/j.molcel.2018.01.011", + "https://www.ncbi.nlm.nih.gov/pubmed/29429924" + ], "kit": null, "file": "data/addgene_plasmids/106100.addgene-full.gb" }, @@ -131314,7 +165538,10 @@ "plasmid_name": "slc1a3b:myrGFP-P2A-H2AmCherry", "sequence-type": "addgene-full", "addgene_id": "170208", - "references": [], + "references": [ + "https://doi.org/10.1038/s41593-020-0703-x", + "https://www.ncbi.nlm.nih.gov/pubmed/32895565" + ], "kit": null, "file": "data/addgene_plasmids/170208.addgene-full.gb" }, @@ -131323,7 +165550,10 @@ "plasmid_name": "pLenti4/V5-DEST-LASSIE", "sequence-type": "addgene-full", "addgene_id": "192105", - "references": [], + "references": [ + "https://doi.org/10.1038/s42003-020-0987-0", + "https://www.ncbi.nlm.nih.gov/pubmed/32457386" + ], "kit": null, "file": "data/addgene_plasmids/192105.addgene-full.gb" }, @@ -131332,7 +165562,10 @@ "plasmid_name": "SHP2(WT)@pLKO-Trex-SBP", "sequence-type": "addgene-full", "addgene_id": "85457", - "references": [], + "references": [ + "https://doi.org/10.1038/nature18621", + "https://www.ncbi.nlm.nih.gov/pubmed/27362227" + ], "kit": null, "file": "data/addgene_plasmids/85457.addgene-full.gb" }, @@ -131341,7 +165574,10 @@ "plasmid_name": "TFORF3102", "sequence-type": "addgene-full", "addgene_id": "144578", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144578.addgene-full.gb" }, @@ -131350,7 +165586,10 @@ "plasmid_name": "pLenti6.2_3xFLAG_V5_ mmIfih1_V5", "sequence-type": "addgene-full", "addgene_id": "160110", - "references": [], + "references": [ + "https://doi.org/10.1158/2159-8290.CD-19-1416", + "https://www.ncbi.nlm.nih.gov/pubmed/32371478" + ], "kit": null, "file": "data/addgene_plasmids/160110.addgene-full.gb" }, @@ -131359,7 +165598,10 @@ "plasmid_name": "TFORF3222", "sequence-type": "addgene-full", "addgene_id": "144698", - "references": [], + "references": [ + "https://doi.org/10.1016/j.cell.2022.11.026", + "https://www.ncbi.nlm.nih.gov/pubmed/36608654" + ], "kit": null, "file": "data/addgene_plasmids/144698.addgene-full.gb" }, @@ -131368,7 +165610,6 @@ "plasmid_name": "R777-E158 Hs.PDGFRB-nostop", "sequence-type": "depositor-full", "addgene_id": "70442", - "references": [], "kit": { "name": "RAS Clone Collections- RAS and RAS Pathway Constructs", "url": "https://www.addgene.org/1000000070/" @@ -131380,7 +165621,6 @@ "plasmid_name": "p663-UBC-miniTurbo-V5-CDK19_IDG-K", "sequence-type": "addgene-full", "addgene_id": "158175", - "references": [], "kit": null, "file": "data/addgene_plasmids/158175.addgene-full.gb" }, @@ -131389,7 +165629,10 @@ "plasmid_name": "pHAGE-CDK6-V181I", "sequence-type": "addgene-full", "addgene_id": "116218", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2018.01.021", + "https://www.ncbi.nlm.nih.gov/pubmed/29533785" + ], "kit": null, "file": "data/addgene_plasmids/116218.addgene-full.gb" }, @@ -131398,7 +165641,10 @@ "plasmid_name": "pMuLE ENTR U6-miR-30 L5-L2", "sequence-type": "depositor-full", "addgene_id": "62115", - "references": [], + "references": [ + "https://doi.org/10.1172/JCI79743", + "https://www.ncbi.nlm.nih.gov/pubmed/25751063" + ], "kit": null, "file": "data/addgene_plasmids/62115.depositor-full.gb" }, @@ -131407,7 +165653,10 @@ "plasmid_name": "plenti-UbcP-HA-YWAA-pGK-HYG", "sequence-type": "addgene-full", "addgene_id": "107379", - "references": [], + "references": [ + "https://doi.org/10.1126/science.1244917", + "https://www.ncbi.nlm.nih.gov/pubmed/24292623" + ], "kit": null, "file": "data/addgene_plasmids/107379.addgene-full.gb" }, @@ -131416,7 +165665,10 @@ "plasmid_name": "pBi2FC-N-MGGAGM-P2A:mCherry", "sequence-type": "addgene-full", "addgene_id": "216142", - "references": [], + "references": [ + "https://doi.org/10.1007/s12298-024-01477-y", + "https://www.ncbi.nlm.nih.gov/pubmed/39100877" + ], "kit": null, "file": "data/addgene_plasmids/216142.addgene-full.gb" }, @@ -131425,7 +165677,10 @@ "plasmid_name": "pDONR223_PPOX_WT_V5", "sequence-type": "addgene-full", "addgene_id": "82951", - "references": [], + "references": [ + "https://doi.org/10.1016/j.ccell.2016.06.022", + "https://www.ncbi.nlm.nih.gov/pubmed/27478040" + ], "kit": null, "file": "data/addgene_plasmids/82951.addgene-full.gb" }, @@ -131434,7 +165689,10 @@ "plasmid_name": "II801: pMVP (L5-L4) ecDHFR DD", "sequence-type": "addgene-full", "addgene_id": "121721", - "references": [], + "references": [ + "https://doi.org/10.1093/nar/gky1286", + "https://www.ncbi.nlm.nih.gov/pubmed/30590691" + ], "kit": null, "file": "data/addgene_plasmids/121721.addgene-full.gb" } diff --git a/run_formatting.sh b/run_formatting.sh index 5b1244f..463dd9e 100644 --- a/run_formatting.sh +++ b/run_formatting.sh @@ -1,9 +1,18 @@ #! /bin/bash set -e +echo -e "\033[32mRunning make_plasmid_site_dict.py\033[0m" python make_plasmid_site_dict.py + +echo -e "\033[32mRunning make_plasmid_summary.py\033[0m" python make_plasmid_summary.py + +echo -e "\033[32mRunning make_feature_dict.py\033[0m" python make_feature_dict.py + +echo -e "\033[32mRunning make_unique_sites.py\033[0m" python make_unique_sites.py + +echo -e "\033[32mRunning make_combinatorial_att_sites.py\033[0m" python make_combinatorial_att_sites.py