diff --git a/intermountain/create_series_list_intermountain.py b/intermountain/create_series_list_intermountain.py index d689d61..eeb0688 100755 --- a/intermountain/create_series_list_intermountain.py +++ b/intermountain/create_series_list_intermountain.py @@ -41,36 +41,6 @@ def convert(args): except RuntimeWarning: # Ignore warnings (e.g. no slices found in a dir). continue - """ - - if series.series_number == contrast_series: - if not args.include_unmasked and series.aneurysm_mask_path is None: - continue - mode = 'contrast' - elif args.include_non_contrast and series.series_number == non_contrast_series: - mode = 'non_contrast' - else: - # TODO: Only converting annotated contrast and non-contrast series for now. - continue - - try: - series.annotate(args.is_aneurysm, mode, annotation, require_aneurysm_range=args.require_range) - except RuntimeWarning as w: - util.print_err('Not converting series at {}:'.format(base_path), w) - continue - - # Extend an existing series' aneurysm bounds if this is a duplicate annotation - if args.is_aneurysm: - found_duplicate = False - for s in series_list: - if s.study_name == series.study_name and s.series_number == series.series_number: - s.aneurysm_bounds = [min(s.aneurysm_bounds[0], series.aneurysm_bounds[0]), - max(s.aneurysm_bounds[1], series.aneurysm_bounds[1])] - s.aneurysm_ranges.append(series.aneurysm_bounds) - found_duplicate = True - if found_duplicate: - continue - """ series_list.append(series)