diff --git a/atlas/rules/cat_taxonomy.smk b/atlas/rules/cat_taxonomy.smk index 863d7540..ee93f50f 100644 --- a/atlas/rules/cat_taxonomy.smk +++ b/atlas/rules/cat_taxonomy.smk @@ -31,7 +31,7 @@ rule cat_on_bin: flag=CAT_flag_downloaded, genome= "genomes/taxonomy/{genome}/{genome}.fasta", output: - expand("genomes/taxonomy/{genome}/{genome}.{extension}", + expand("genomes/taxonomy/{{genome}}/{{genome}}.{extension}", extension=['bin2classification.txt', 'concatenated.alignment.diamond', 'ORF2LCA.txt','log'])