diff --git a/rounds/round1.md b/rounds/round1.md index e41687f..8d312f7 100644 --- a/rounds/round1.md +++ b/rounds/round1.md @@ -19,7 +19,7 @@ structure is as follows: ### Assumptions regarding RSV interventions Weekly cumulative age-specific coverage for vaccines and monoclonals are -[provided](./auxiliary-data//vaccine_coverage/RSV_round1_Coverage_2023_2024.csv). +[provided](https://github.com/midas-network/rsv-scenario-modeling-hub/blob/main/auxiliary-data/vaccine_coverage/RSV_round1_Coverage_2023_2024.csv). We describe important details of the planned implementation of RSV interventions below as well as our rationale for vaccine coverage and @@ -94,7 +94,8 @@ coverage assumptions, while we have chosen optimistic levels of coverage that would reflect potential benefits in a future season with no shortage and more awareness of these interventions. **Senior and infant vaccination coverage curves are provided for all projection weeks and target locations**, -in the [Github auxiliary data folder](./auxiliary-data/vaccine_coverage/) +in the +[Github auxiliary data folder](https://github.com/midas-network/rsv-scenario-modeling-hub/blob/main/auxiliary-data/) ##### VE Assumptions @@ -179,7 +180,8 @@ acute care hospitals in a subset of states (12 states as of August 2023). Age-specific weekly rates per 100,000 population are reported in this system. The data has been standardized and posted on the -[SMH RSV github target-data/ folder](./target-data/) and is updated weekly. +[SMH RSV github target-data/ folder](https://github.com/midas-network/rsv-scenario-modeling-hub/blob/main/target-data/) +and is updated weekly. **The target in this data is the weekly number of hospitalizations in each given state (inc_hosp variable), for all ages and by age group**. To obtain counts, we have converted RSV-NET weekly rates based on state population sizes. This method assumes that RSV-NET hospitals are representative @@ -198,7 +200,8 @@ the projections. #### Other RSV datasets available for calibration A few auxiliary datasets have been posted in the GitHub repositority -[auxiliary-data/ folder](./auxiliary-data/) including: +[auxiliary-data/ folder](https://github.com/midas-network/rsv-scenario-modeling-hub/blob/main/auxiliary-data/) +including: - state-specific CDC surveillance from NVERSS (only last year of data available) - state-specific ED data (only last year of data available) @@ -223,7 +226,8 @@ counts, as well as for hospital admission peak size and peak timing. admissions, based on RSV-NET. This dataset is updated daily and covers 2017-2023. There should be no adjustment for reporting (=raw data from RSV-NET dataset to be projected). A current and standardized version of - the weekly data has been posted [here](./target-data/) + the weekly data has been posted + [here](https://github.com/midas-network/rsv-scenario-modeling-hub/blob/main/target-data/) - No infection target - No case target - No death target @@ -327,7 +331,7 @@ low level masking is allowed at groups’ discretion. We leave seeding intensity, timing and geographic distribution at the discretion of the teams. In addition to the RSV-NET hospital admission dataset, CDC’s NVERSS -[viral surveillance dataset](https://github.com/midas-network/rsv-scenario-modeling-hub) +[viral surveillance dataset](https://github.com/midas-network/rsv-scenario-modeling-hub/tree/main/auxiliary-data) is a good resource for state-specific information on epidemic intensity (e.g., weekly % positive, or weekly ILI*%positive), and can be used to adjust seeding.