VIPlight_V0.yml

# conda create -y -n VIP -c conda-forge python=3.8.15 mamba=0.15.3
# conda activate VIP
# mamba env update -f VIPlight.yml
channels:
  - conda-forge
  - defaults
  - bioconda
dependencies:
  - mamba=0.15.3
  - numba=0.56.4
  - scanpy=1.4.6
  - anndata=0.7.8
  - h5py=2.10.0
  - pandas=1.5.3
  - matplotlib=3.6.2
  - seaborn=0.12.1
  - plotly=5.11.0
  - pyarrow=10.0.1
  - r-base=4.2.2
  - r-ggplot2=3.4.0
  - r-reshape2=1.4.4
  - r-ggforce=0.4.1
  - r-patchwork=1.1.2
  - r-tidyverse=1.3.2
  - r-ggpubr=0.5.0
  - r-cairo=1.6_0
  - r-dplyr=1.0.10
  - r-png=0.1_8
  - r-mass=7.3_58.1
  - r-data.table=1.14.6
  - r-rcolorbrewer=1.1_3
  - r-glue=1.6.2
  - r-gridextra=2.3
  - r-ggrepel=0.9.2
  - r-ggrastr=1.0.1
  - r-viridis=0.6.2
  - r-biocmanager
  - bioconductor-rtracklayer=1.58.0=r42h171f361_1 # if the older bioconductor version is not available, install manually using other mirror site chooseBioCmirror()
  - bioconductor-genomicranges=1.50.0=r42hc0cfd56_0
  - bioconductor-genomeinfodb=1.34.8=r42hdfd78af_0
  - bioconductor-s4vectors=0.36.0=r42hc0cfd56_0
  - bioconductor-iranges=2.32.0=r42hc0cfd56_0
  - bioconductor-complexheatmap=2.14.0=r42hdfd78af_0
  - bioconductor-fgsea=1.24.0=r42hc247a5b_0
  - pip=23.0.1
  - pip:
    - diffxpy==0.7.4
#genomeinfodbdata