config-sample.yml

---
### Processor configuration

# This is the base directory for all datasets.
root_dir: /data

# How many data files to process in each batch (default 500).
# batch_size: 500


### Dataset configuration

# The list of datasets to be run by process_all.py.
# Set averaged to True if the dataset is already aggregated.
# If base_dir does not start with /, it is appended to root_dir.
# If meta_file, data_dir, log_dir, or output_dir do not start with /,
# they are appended to base_dir.
# meta_file may be a list for some dataset types.
# data_dir can be a list or a string.
# Only the commented rows below have default values.

datasets:
  - name: MHC ChemLIBS
    type: LIBS
    channels: 6144
    # averaged: False
    base_dir: MHC.LIBS/DATA
    meta_file: COMPOSITIONS/Millennium_COMPS.xlsx
    data_dir: PREPROCESSED_NO_BLR
    # log_dir: nightly-logs
    # output_dir: to-DEVAS
    # output_prefix: prepro_no_blr
    # channels_file: prepro_channels.npy


### Logging configuration

# Logs will be written to sys.stdout unless you provide a filename.
# Default values are shown below; uncomment and change.
logging:
  # datefmt: '%Y-%m-%d %H:%M:%S'
  # filename: None
  # format: '%(asctime)s - %(levelname)s - %(message)s'
  # level: 'INFO'