From 9bf2df83f6dab271e545fd013fa745d21a7adb6d Mon Sep 17 00:00:00 2001 From: naumenko-sa Date: Mon, 15 Jul 2019 11:27:21 -0400 Subject: [PATCH] sync --- cre.vcfanno.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/cre.vcfanno.sh b/cre.vcfanno.sh index 1a4d2ef..edf60a5 100755 --- a/cre.vcfanno.sh +++ b/cre.vcfanno.sh @@ -15,7 +15,7 @@ bname=`basename $vcf .vcf.gz` prefix=$HOME/cre vcfanno -p 5 -lua $prefix/cre.vcfanno.lua \ - -base-path /hpf/largeprojects/ccmbio/naumenko/tools/bcbio/genomes/Hsapiens/GRCh37 \ + -base-path /hpf/largeprojects/ccmbio/naumenko/tools/bcbio_1.1.5/genomes/Hsapiens/GRCh37 \ $prefix/cre.vcfanno.conf \ $vcf | sed -e 's/Number=A/Number=1/g' | bgzip -c > $bname.annotated.vcf.gz