diff --git a/bcl2fastq.sh b/bcl2fastq.sh index 3ebcd22..42e04b0 100755 --- a/bcl2fastq.sh +++ b/bcl2fastq.sh @@ -3,7 +3,7 @@ #PBS -l walltime=23:00:00,nodes=1:ppn=10 #PBS -joe . #PBS -d . -#PBS -l vmem=20g,mem=20g +#PBS -l vmem=30g,mem=30g if [ -z $sample_sheet ]; then @@ -11,6 +11,8 @@ then fi #2.19 needs 20G of RAM for 10 threads +# sometimes 20G is not enough - I've got an error +# bcl2fastq is designed up to 32G module load bcl2fastq #I use no-lane splitting, and the result fastq files could not be uploaded to basespace