diff --git a/config/mitochondrial.yaml b/config/mitochondrial.yaml
new file mode 100644
index 0000000..3374bf3
--- /dev/null
+++ b/config/mitochondrial.yaml
@@ -0,0 +1,31 @@
+details:
+- algorithm:
+    aligner: bwa
+    effects: vep
+    effects_transcripts: all
+    realign: false
+    recalibrate: false
+    mark_duplicates: true
+    save_diskspace: true
+    tools_on:
+    - gemini
+    - vep_splicesite_annotations
+    - noalt_calling
+    variantcaller:
+    - gatk-haplotype
+  analysis: variant2
+  description: '912R_A337376'
+  files:
+  - /hpf/largeprojects/ccmbio/naumenko/project_cheo/912R/input/912R_A337376.bam
+  genome_build: GRCh37
+  metadata:
+    batch: 912R
+resources:
+  default:
+    cores: 7
+    jvm_opts:
+    - -Xms750m
+    - -Xmx7000m
+    memory: 7G
+upload:
+  dir: ../final
diff --git a/config/somatic.yaml b/config/somatic.yaml
new file mode 100644
index 0000000..5adb507
--- /dev/null
+++ b/config/somatic.yaml
@@ -0,0 +1,28 @@
+details:
+- algorithm:
+    aligner: bwa
+    effects: snpeff
+    effects_transcripts: all
+    realign: false
+    recalibrate: false
+    mark_duplicates: true
+    save_diskspace: true
+    tools_on:
+    - noalt_calling
+    variantcaller:
+    - mutect2
+    - vardict
+  analysis: variant2
+  description: '912R_A337376'
+  files:
+  - /hpf/largeprojects/ccmbio/naumenko/project_cheo/912R/input/912R_A337376.bam
+  genome_build: hg38
+resources:
+  default:
+    cores: 7
+    jvm_opts:
+    - -Xms750m
+    - -Xmx7000m
+    memory: 7G
+upload:
+  dir: ../final
diff --git a/cre.annotation.strip.sh b/cre.annotation.strip.sh
deleted file mode 100755
index 96dc974..0000000
--- a/cre.annotation.strip.sh
+++ /dev/null
@@ -1,5 +0,0 @@
-#!/bin/bash
-# also vt rminfo but it requires exact case matching
-bname=`basename $1 .vcf.gz`
-bcftools annotate -x ^INFO/AC,INFO/AF,INFO/AN,INFO/BaseQRankSum,INFO/ClippingRankSum,INFO/DB,INFO/DP,INFO/ExcessHet,INFO/FS,INFO/MLEAC,INFO/MLEAF,INFO/MQ,INFO/MQ0,INFO/MQRankSum,INFO/QD,INFO/ReadPosRankSum,INFO/SOR -Oz -o $bname.no_anno.vcf.gz $1
-tabix $bname.no_anno.vcf.gz