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how to translate the copykat results to inferCNV i6 HMM (the six-state CNV model) #106

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sadiexiaoyu opened this issue Nov 21, 2023 · 0 comments
Open

how to translate the copykat results to inferCNV i6 HMM (the six-state CNV model) #106

sadiexiaoyu opened this issue Nov 21, 2023 · 0 comments

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@sadiexiaoyu
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Hi,
thanks for the cool software!
I would like to ask how to connect the copykat results into i6HMM state in inferCNV? Thanks!
0x: complete loss
0.5x: loss of one copy
1x: neutral
1.5x: addition of one copy
2x: addition of two copies
3x: essentially a placeholder for >2x copies but modeled as 3x.
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