Error in cluster mode

[AClab-sgarcia]

Good afternoon,
I'm trying to rum CopyKAT in cluster mode. I have 13 samples and I want to perform the analysis as quick as possible.
While doing the analysis I get the following error after step10:
Error in jpeg(paste(sample.name, "heatmap.jpeg", sep = ""), height = h * : X11 is not available
As far as I know CopyKAT does not open any window (at least it does not do it in my computer).
Do you know how can I override this problem?

Thanks!! Great and super useful package!

[decodebiology]

I am having the same issue. Have you found any workaround?. I just want to skip the plotting function from copyKat and jump to the part where it outputs .seg files (segmentation) . But it keeps calling the plot function and gives this error #103.

[AClab-sgarcia]

I haven't made any progress on this error, sorry I can't help you.