diff --git a/config/config.yaml b/config/config.yaml index 7f52f13..d109d56 100644 --- a/config/config.yaml +++ b/config/config.yaml @@ -58,17 +58,17 @@ models: gisaid: nextstrain_clades: global: - pivot: "23A" + pivot: "23I" pango_lineages: global: - pivot: "XBB.1.5" + pivot: "JN.1" open: nextstrain_clades: global: - pivot: "23A" + pivot: "23I" pango_lineages: global: - pivot: "XBB.1.5" + pivot: "JN.1" # Model configs mlr_config: "config/mlr-config.yaml" diff --git a/config/mlr-config.yaml b/config/mlr-config.yaml index 7f7c1d1..3ebdf34 100644 --- a/config/mlr-config.yaml +++ b/config/mlr-config.yaml @@ -13,7 +13,7 @@ settings: model: generation_time: 4.8 - pivot: "23A" + pivot: "23I" hierarchical: true inference: diff --git a/viz/src/App.jsx b/viz/src/App.jsx index 33045f8..cdb9065 100644 --- a/viz/src/App.jsx +++ b/viz/src/App.jsx @@ -41,8 +41,8 @@ function App() {
These plots show the estimated growth advantage for given clades relative to clade - 23A (lineage XBB.1.5). This describes how many more secondary infections a variant causes - on average relative to clade 23A. Vertical bars show the 95% HPD. The "hierarchical" panel + 23I (lineage BA.2.86). This describes how many more secondary infections a variant causes + on average relative to clade 23I. Vertical bars show the 95% HPD. The "hierarchical" panel shows pooled estimate of growth rates across different locations. Results last updated {mlrCladesData?.modelData?.get('updated') || 'loading'}.
@@ -64,8 +64,8 @@ function App() {These plots show the estimated growth advantage for given Pango lineages relative to - lineage XBB.1.5. This describes how many more secondary infections a variant causes - on average relative to lineage XBB.1.5. Vertical bars show the 95% HPD. + lineage JN.1. This describes how many more secondary infections a variant causes + on average relative to lineage JN.1. Vertical bars show the 95% HPD. The "hierarchical" panel shows pooled estimate of growth rates across different locations. Results last updated {mlrLineagesData?.modelData?.get('updated') || 'loading'}.