From 03a0bf39b7630cb3dd74000602b0c02ec64b0a16 Mon Sep 17 00:00:00 2001 From: Richard Neher Date: Thu, 30 May 2024 09:50:33 +0200 Subject: [PATCH] remove root sequence from expected outputs --- workflow/snakemake_rules/main_workflow.smk | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/workflow/snakemake_rules/main_workflow.smk b/workflow/snakemake_rules/main_workflow.smk index ae9c532b5..96b4d3886 100644 --- a/workflow/snakemake_rules/main_workflow.smk +++ b/workflow/snakemake_rules/main_workflow.smk @@ -1402,8 +1402,7 @@ rule export: lat_longs = config["files"]["lat_longs"], description = rules.build_description.output.description output: - auspice_json = "results/{build_name}/ncov_with_accessions.json", - root_sequence_json = "results/{build_name}/ncov_with_accessions_root-sequence.json" + auspice_json = "results/{build_name}/ncov_with_accessions.json" log: "logs/export_{build_name}.txt" benchmark: