From f9a7f7492cb551b100ead76ede53c064d9a6b6d6 Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Thu, 22 Aug 2024 11:30:19 -0700 Subject: [PATCH] Update output text for Augur 25.3.0 Format updated in https://github.com/nextstrain/augur/commit/ddca760627e40ba196e4ca9deda38577789577eb --- tests/sanitize-metadata.t | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/tests/sanitize-metadata.t b/tests/sanitize-metadata.t index 97854226e..82b552191 100644 --- a/tests/sanitize-metadata.t +++ b/tests/sanitize-metadata.t @@ -41,7 +41,7 @@ Throw an error when metadata doesn't have any of the requested strain id columns > --metadata-id-columns strain \ > --database-id-columns gisaid_epi_isl genbank_accession \ > --output "$TMP/metadata.tsv" - ERROR: None of the possible id columns (['strain']) were found in the metadata's columns ('Virus name', 'gender', 'date', 'gisaid_epi_isl') + ERROR: None of the possible id columns ('strain') were found in the metadata's columns ('Virus name', 'gender', 'date', 'gisaid_epi_isl') [1] Print a warning when metadata doesn't have any of the requested database id columns.