From 9149acfecffb4c2758e60a673f891b626c1f9512 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Fri, 20 Dec 2024 13:44:56 +0100 Subject: [PATCH] Revert "Use weighted sampling for recent samples in global builds" --- nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml | 3 --- nextstrain_profiles/nextstrain-gisaid/builds.yaml | 3 --- nextstrain_profiles/nextstrain-open/builds.yaml | 3 --- 3 files changed, 9 deletions(-) diff --git a/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml b/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml index bc7ff39a1..d9d9c3968 100644 --- a/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml +++ b/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml @@ -294,7 +294,6 @@ subsampling: max_date: "--max-date 1M" recent: group_by: "country week" - group_by_weights: "defaults/population_weights.tsv" max_sequences: 4100 min_date: "--min-date 1M" @@ -309,7 +308,6 @@ subsampling: max_date: "--max-date 2M" recent: group_by: "country week" - group_by_weights: "defaults/population_weights.tsv" max_sequences: 4100 min_date: "--min-date 2M" @@ -324,7 +322,6 @@ subsampling: max_date: "--max-date 6M" recent: group_by: "country year month" - group_by_weights: "defaults/population_weights.tsv" max_sequences: 4100 min_date: "--min-date 6M" diff --git a/nextstrain_profiles/nextstrain-gisaid/builds.yaml b/nextstrain_profiles/nextstrain-gisaid/builds.yaml index dbc0c7a34..03dce7edf 100644 --- a/nextstrain_profiles/nextstrain-gisaid/builds.yaml +++ b/nextstrain_profiles/nextstrain-gisaid/builds.yaml @@ -286,7 +286,6 @@ subsampling: max_date: "--max-date 1M" recent: group_by: "country week" - group_by_weights: "defaults/population_weights.tsv" max_sequences: 4100 min_date: "--min-date 1M" @@ -301,7 +300,6 @@ subsampling: max_date: "--max-date 2M" recent: group_by: "country week" - group_by_weights: "defaults/population_weights.tsv" max_sequences: 4100 min_date: "--min-date 2M" @@ -316,7 +314,6 @@ subsampling: max_date: "--max-date 6M" recent: group_by: "country year month" - group_by_weights: "defaults/population_weights.tsv" max_sequences: 4100 min_date: "--min-date 6M" diff --git a/nextstrain_profiles/nextstrain-open/builds.yaml b/nextstrain_profiles/nextstrain-open/builds.yaml index 5bffe0244..9d4e60aec 100644 --- a/nextstrain_profiles/nextstrain-open/builds.yaml +++ b/nextstrain_profiles/nextstrain-open/builds.yaml @@ -286,7 +286,6 @@ subsampling: max_date: "--max-date 1M" recent: group_by: "country week" - group_by_weights: "defaults/population_weights.tsv" max_sequences: 4100 min_date: "--min-date 1M" @@ -301,7 +300,6 @@ subsampling: max_date: "--max-date 2M" recent: group_by: "country week" - group_by_weights: "defaults/population_weights.tsv" max_sequences: 4100 min_date: "--min-date 2M" @@ -316,7 +314,6 @@ subsampling: max_date: "--max-date 6M" recent: group_by: "country year month" - group_by_weights: "defaults/population_weights.tsv" max_sequences: 4100 min_date: "--min-date 6M"