From d517a5ff2a75be871c9a2778c8aebe6c07393560 Mon Sep 17 00:00:00 2001
From: Trevor Bedford <trevor@bedford.io>
Date: Mon, 30 Sep 2024 16:03:12 -0700
Subject: [PATCH] Apply clade recency to open and 21L builds

---
 .../nextstrain-gisaid-21L/builds.yaml         | 48 +++++++++++++++++++
 .../nextstrain-open/builds.yaml               | 48 +++++++++++++++++++
 2 files changed, 96 insertions(+)

diff --git a/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml b/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml
index bc7e8b5be..4e1094d8d 100644
--- a/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml
+++ b/nextstrain_profiles/nextstrain-gisaid-21L/builds.yaml
@@ -886,6 +886,54 @@ subsampling:
 refine:
   root: "21L"
 
+# if different traits should be reconstructed for some builds, specify here
+# otherwise the default trait config in defaults/parameters.yaml will used
+colors:
+  default:
+    clade_recency: "all"
+  global_1m:
+    clade_recency: "1M"
+  global_2m:
+    clade_recency: "2M"
+  global_6m:
+    clade_recency: "6M"
+  africa_1m:
+    clade_recency: "1M"
+  africa_2m:
+    clade_recency: "2M"
+  africa_6m:
+    clade_recency: "6M"
+  asia_1m:
+    clade_recency: "1M"
+  asia_2m:
+    clade_recency: "2M"
+  asia_6m:
+    clade_recency: "6M"
+  europe_1m:
+    clade_recency: "1M"
+  europe_2m:
+    clade_recency: "2M"
+  europe_6m:
+    clade_recency: "6M"
+  north-america_1m:
+    clade_recency: "1M"
+  north-america_2m:
+    clade_recency: "2M"
+  north-america_6m:
+    clade_recency: "6M"
+  oceania_1m:
+    clade_recency: "1M"
+  oceania_2m:
+    clade_recency: "2M"
+  oceania_6m:
+    clade_recency: "6M"
+  south-america_1m:
+    clade_recency: "1M"
+  south-america_2m:
+    clade_recency: "2M"
+  south-america_6m:
+    clade_recency: "6M"
+
 # if different traits should be reconstructed for some builds, specify here
 # otherwise the default trait config in defaults/parameters.yaml will used
 traits:
diff --git a/nextstrain_profiles/nextstrain-open/builds.yaml b/nextstrain_profiles/nextstrain-open/builds.yaml
index d7709518b..b1bbd0466 100644
--- a/nextstrain_profiles/nextstrain-open/builds.yaml
+++ b/nextstrain_profiles/nextstrain-open/builds.yaml
@@ -799,6 +799,54 @@ subsampling:
 refine:
   root: "Wuhan-Hu-1/2019"
 
+# if different traits should be reconstructed for some builds, specify here
+# otherwise the default trait config in defaults/parameters.yaml will used
+colors:
+  default:
+    clade_recency: "all"
+  global_1m:
+    clade_recency: "1M"
+  global_2m:
+    clade_recency: "2M"
+  global_6m:
+    clade_recency: "6M"
+  africa_1m:
+    clade_recency: "1M"
+  africa_2m:
+    clade_recency: "2M"
+  africa_6m:
+    clade_recency: "6M"
+  asia_1m:
+    clade_recency: "1M"
+  asia_2m:
+    clade_recency: "2M"
+  asia_6m:
+    clade_recency: "6M"
+  europe_1m:
+    clade_recency: "1M"
+  europe_2m:
+    clade_recency: "2M"
+  europe_6m:
+    clade_recency: "6M"
+  north-america_1m:
+    clade_recency: "1M"
+  north-america_2m:
+    clade_recency: "2M"
+  north-america_6m:
+    clade_recency: "6M"
+  oceania_1m:
+    clade_recency: "1M"
+  oceania_2m:
+    clade_recency: "2M"
+  oceania_6m:
+    clade_recency: "6M"
+  south-america_1m:
+    clade_recency: "1M"
+  south-america_2m:
+    clade_recency: "2M"
+  south-america_6m:
+    clade_recency: "6M"
+
 # if different traits should be reconstructed for some builds, specify here
 # otherwise the default trait config in defaults/parameters.yaml will used
 traits: