From 34e03ea23fe52edbab8de5a61ece35b676e33df2 Mon Sep 17 00:00:00 2001
From: Annick Renevey <47788523+rannick@users.noreply.github.com>
Date: Wed, 26 Apr 2023 12:52:33 +0200
Subject: [PATCH 1/2] fix typo html files

---
 modules/local/fusionreport/detect/main.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/modules/local/fusionreport/detect/main.nf b/modules/local/fusionreport/detect/main.nf
index aa5bfedc..8c35be4a 100644
--- a/modules/local/fusionreport/detect/main.nf
+++ b/modules/local/fusionreport/detect/main.nf
@@ -16,7 +16,7 @@ process FUSIONREPORT {
     tuple val(meta), path("*fusionreport.tsv")                          , emit: fusion_list
     tuple val(meta), path("*fusionreport_filtered.tsv")                 , emit: fusion_list_filtered
     tuple val(meta), path("index.html")                                 , emit: report
-    tuple val(meta), path("*--*.html")                                  , emit: html
+    tuple val(meta), path("*_*.html")                                   , emit: html
     tuple val(meta), path("*.csv")                       , optional:true, emit: csv
     tuple val(meta), path("*.json")                      , optional:true, emit: json
 
@@ -53,7 +53,7 @@ process FUSIONREPORT {
     touch ${prefix}.fusionreport_filtered.tsv
     touch ${prefix}.fusionreport.tsv
     touch index.html
-    touch AAA--BBB.html
+    touch AAA_BBB.html
     touch ${prefix}.fusions.csv
     touch ${prefix}.fusions.json
 

From ada8314c505374148bde84d9a458b22767560855 Mon Sep 17 00:00:00 2001
From: Annick Renevey <47788523+rannick@users.noreply.github.com>
Date: Wed, 26 Apr 2023 12:52:55 +0200
Subject: [PATCH 2/2] bump version

---
 nextflow.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nextflow.config b/nextflow.config
index f0e7afbe..0f0bbc88 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -256,7 +256,7 @@ manifest {
     description     = """Nextflow rnafusion analysis pipeline, part of the nf-core community."""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=22.10.1'
-    version = '2.3.3'
+    version = '2.3.4'
     doi             = ''
 }