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SARS-CoV-2 ORF1b mutation reporting differences between SnpEff and Nextclade
bug
Something isn't working
#263
opened Jan 28, 2022 by
peterk87
updated Feb 3, 2022
CRAM output
enhancement
Improvement for existing functionality
#294
opened Mar 5, 2022 by
dbrami
updated Mar 7, 2022
Add LoFreq Subworkflow
enhancement
Improvement for existing functionality
#302
opened Apr 4, 2022 by
bjohnnyd
updated Apr 4, 2022
error at the assembly stage
bug
Something isn't working
#298
opened Mar 23, 2022 by
Mewgia
updated Aug 30, 2022
Add option to hard trim amplicon primer sequences
enhancement
Improvement for existing functionality
#290
opened Mar 1, 2022 by
drpatelh
updated Aug 31, 2022
Add subworkflows to nf-core
enhancement
Improvement for existing functionality
new subworkflow
subworkflows
#371
opened Mar 24, 2023 by
drpatelh
updated Mar 28, 2023
2 of 5 tasks
Minia assembly is non-deterministic in parallel
enhancement
Improvement for existing functionality
#381
opened May 11, 2023 by
tetedange13
updated May 11, 2023
Add support for artic primer set version V5.3.2
enhancement
Improvement for existing functionality
#373
opened Mar 24, 2023 by
mbdabrowska1
updated Aug 11, 2023
[bug] Fails to find FASTQ files when stored on S3
bug
Something isn't working
#385
opened Jul 31, 2023 by
adamrtalbot
updated Aug 16, 2023
ivar_variants_to_vcf.py collapses low quality ivar variant with high quality variant
bug
Something isn't working
Add QIAseq DIRECT SARS-CoV-2 Kit amplicons
enhancement
Improvement for existing functionality
#394
opened Aug 30, 2023 by
dwinter
updated Aug 30, 2023
Problem installing viralrecon
bug
Something isn't working
#399
opened Oct 13, 2023 by
vilocha
updated Oct 13, 2023
Error running version 2.6.0 with Nanopore data in process NFCORE_VIRALRECON:NANOPORE:ARTIC_MINION
bug
Something isn't working
#402
opened Oct 31, 2023 by
AdrianMBarrera
updated Oct 31, 2023
Artic v5 mismatched primer names in artic-ncov2019 repo cause certain amplicons to be erroneously filtered/removed
bug
Something isn't working
#392
opened Aug 18, 2023 by
Sam-Sims
updated Nov 7, 2023
Split authors in generated RO crate
enhancement
Improvement for existing functionality
#404
opened Nov 28, 2023 by
renatocjn
updated Nov 28, 2023
Error when running illumina command
bug
Something isn't working
#423
opened Apr 8, 2024 by
fractaljc
updated Apr 8, 2024
-[nf-core/viralrecon] Pipeline completed with errors- Error executing process > 'NFCORE_VIRALRECON:NANOPORE:ARTIC_MINION (SRX12373518)' Caused by: Process Something isn't working
NFCORE_VIRALRECON:NANOPORE:ARTIC_MINION (SRX12373518)
terminated with an error exit status (20)
bug
#376
opened Mar 31, 2023 by
dejenie21
updated Apr 9, 2024
Show ref/alt bases in ASCIIGenome screenshots
enhancement
Improvement for existing functionality
#210
opened Jun 16, 2021 by
drpatelh
updated Apr 22, 2024
Temp file problem in VARIANTS_IVAR:BCFTOOLS_SORT
bug
Something isn't working
#415
opened Jan 30, 2024 by
Paururo
updated May 7, 2024
Properly deal with multiqc in the config files before the next release
enhancement
Improvement for existing functionality
Argument input-fasta is missing in NFCORE_VIRALRECON:ILLUMINA:CONSENSUS_BCFTOOLS:CONSENSUS_QC:NEXTCLADE_RUN"
bug
Something isn't working
#398
opened Oct 12, 2023 by
CeliaRodrigues
updated May 10, 2024
ERROR ~ Error executing process > 'NFCORE_VIRALRECON:NANOPORE:ARTIC_MINION'
bug
Something isn't working
#383
opened Jun 28, 2023 by
alethomas
updated May 10, 2024
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