diff --git a/master/_modules/niworkflows/interfaces/bids.html b/master/_modules/niworkflows/interfaces/bids.html index dc264df63d4..c2e13486df2 100644 --- a/master/_modules/niworkflows/interfaces/bids.html +++ b/master/_modules/niworkflows/interfaces/bids.html @@ -1117,7 +1117,7 @@

Source code for niworkflows.interfaces.bids

                 _copy_any(in_file, out_file)
 
             if self.inputs.metadata:
-                sidecar = out_file.parent / f"{out_file.name.split('.', 1)[0]}.json"
+                sidecar = out_file.parent / f'{out_file.name.split(".", 1)[0]}.json'
                 sidecar.unlink(missing_ok=True)
                 sidecar.write_text(dumps(self.inputs.metadata, indent=2))
                 self._results['out_meta'].append(str(sidecar))
@@ -1583,7 +1583,7 @@ 
Source code for niworkflows.interfaces.bids
                 {k: getattr(self.inputs, k) for k in meta_fields if k not in self._static_traits}
             )
             if self._metadata:
-                sidecar = out_file.parent / f"{out_file.name.split('.', 1)[0]}.json"
+                sidecar = out_file.parent / f'{out_file.name.split(".", 1)[0]}.json'
                 unlink(sidecar, missing_ok=True)
                 sidecar.write_text(dumps(self._metadata, sort_keys=True, indent=2))
                 self._results['out_meta'] = str(sidecar)
@@ -1836,8 +1836,8 @@ 
Source code for niworkflows.interfaces.bids
         return f'{xyz} mm^3'
 
     return (
-        f"Template {space} ({_fmt_xyz(res_meta['zooms'])}),"
-        f" curated by TemplateFlow {tf.__version__}"
+        f'Template {space} ({_fmt_xyz(res_meta["zooms"])}),'
+        f' curated by TemplateFlow {tf.__version__}'
     )
 

         
diff --git a/master/_modules/niworkflows/interfaces/confounds.html b/master/_modules/niworkflows/interfaces/confounds.html
index 2ef00deae7d..5afbbf4ace2 100644
--- a/master/_modules/niworkflows/interfaces/confounds.html
+++ b/master/_modules/niworkflows/interfaces/confounds.html
@@ -514,8 +514,7 @@ 
Source code for niworkflows.interfaces.confounds

     concatenate = traits.Bool(
         True,
         usedefault=True,
-        desc='Indicates whether to concatenate spikes to existing confounds '
-        'or return spikes only',
+        desc='Indicates whether to concatenate spikes to existing confounds or return spikes only',
     )
     output_format = traits.Enum(
         'spikes', 'mask', usedefault=True, desc='Format of output (spikes or mask)'
diff --git a/master/_modules/niworkflows/interfaces/images.html b/master/_modules/niworkflows/interfaces/images.html
index aeb9453078b..43456c47b82 100644
--- a/master/_modules/niworkflows/interfaces/images.html
+++ b/master/_modules/niworkflows/interfaces/images.html
@@ -1057,8 +1057,7 @@ 
Source code for niworkflows.interfaces.images
# This check assumes all input masks have same dimensions
         if img.shape[:3] != mask_imgs[0].shape[:3]:
             raise NotImplementedError(
-                'Input image and mask should be of '
-                'same dimensions before running SignalExtraction'
+                'Input image and mask should be of same dimensions before running SignalExtraction'
             )
         # Load the mask.
         # If mask is a list, each mask is treated as its own ROI/parcel
diff --git a/master/_modules/niworkflows/interfaces/itk.html b/master/_modules/niworkflows/interfaces/itk.html
index 3ae4049b9be..60b1e5017fa 100644
--- a/master/_modules/niworkflows/interfaces/itk.html
+++ b/master/_modules/niworkflows/interfaces/itk.html
@@ -426,8 +426,7 @@ 
Source code for niworkflows.interfaces.itk
     input_image = InputMultiObject(
         File(exists=True),
         mandatory=True,
-        desc='input time-series as a list of volumes after splitting'
-        ' through the fourth dimension',
+        desc='input time-series as a list of volumes after splitting through the fourth dimension',
     )
     num_threads = traits.Int(1, usedefault=True, nohash=True, desc='number of parallel processes')
     save_cmd = traits.Bool(
diff --git a/master/_modules/niworkflows/interfaces/nibabel.html b/master/_modules/niworkflows/interfaces/nibabel.html
index a514ff559b6..dcfe2f871b4 100644
--- a/master/_modules/niworkflows/interfaces/nibabel.html
+++ b/master/_modules/niworkflows/interfaces/nibabel.html
@@ -525,7 +525,7 @@ 
Source code for niworkflows.interfaces.nibabel
img = nb.load(in_file)
         extra_dims = tuple(dim for dim in img.shape[3:] if dim > 1) or (1,)
         if len(extra_dims) != 1:
-            raise ValueError(f"Invalid shape {'x'.join(str(s) for s in img.shape)}")
+            raise ValueError(f'Invalid shape {"x".join(str(s) for s in img.shape)}')
         img = img.__class__(
             img.dataobj.reshape(img.shape[:3] + extra_dims), img.affine, img.header
         )
diff --git a/master/_modules/niworkflows/interfaces/surf.html b/master/_modules/niworkflows/interfaces/surf.html
index cd316ca4e0b..ecb832fb3a3 100644
--- a/master/_modules/niworkflows/interfaces/surf.html
+++ b/master/_modules/niworkflows/interfaces/surf.html
@@ -529,7 +529,7 @@ 
Source code for niworkflows.interfaces.surf
         in_file = Path(self.inputs.in_file)
         extension = ''.join(in_file.suffixes[-((in_file.suffixes[-1] == '.gz') + 1) :])
         info = self._pattern.match(in_file.name[: -len(extension)]).groupdict()
-        self._results['extension'] = f"{info.pop('extprefix', None) or ''}{extension}"
+        self._results['extension'] = f'{info.pop("extprefix", None) or ""}{extension}'
         self._results.update(info)
         if 'hemi' in self._results:
             self._results['hemi'] = self._results['hemi'].upper()
diff --git a/master/_modules/niworkflows/interfaces/workbench.html b/master/_modules/niworkflows/interfaces/workbench.html
index ebe3ce0576d..ec305eec877 100644
--- a/master/_modules/niworkflows/interfaces/workbench.html
+++ b/master/_modules/niworkflows/interfaces/workbench.html
@@ -452,8 +452,7 @@ 
Source code for niworkflows.interfaces.workbench

         argstr='-exponent %f ',
         position=9,
         default=6.0,
-        desc='exponent n to use in (area / (distance ^ n)) as the '
-        'weighting function (default 6)',
+        desc='exponent n to use in (area / (distance ^ n)) as the weighting function (default 6)',
     )
 
     corrected_areas = File(
diff --git a/master/_modules/niworkflows/utils/testing.html b/master/_modules/niworkflows/utils/testing.html
index 19a8b30b520..61e2971adf5 100644
--- a/master/_modules/niworkflows/utils/testing.html
+++ b/master/_modules/niworkflows/utils/testing.html
@@ -436,7 +436,7 @@ 
Source code for niworkflows.utils.testing
 

 [docs]
 def combine_entities(**entities):
-    return f"_{'_'.join([f'{lab}-{val}' for lab, val in entities.items()])}" if entities else ''

+    return f'_{"_".join([f"{lab}-{val}" for lab, val in entities.items()])}' if entities else ''

 
 

         
diff --git a/master/api/niworkflows-anat-ants-1.pdf b/master/api/niworkflows-anat-ants-1.pdf
index de4b7645798..2c8b46b98f2 100644
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diff --git a/master/api/niworkflows-anat-ants-2.pdf b/master/api/niworkflows-anat-ants-2.pdf
index d023ef4f132..bdc71fe2d8d 100644
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diff --git a/master/api/niworkflows-anat-ants-3.pdf b/master/api/niworkflows-anat-ants-3.pdf
index 3259e9b46d5..1a9e7ffc697 100644
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diff --git a/master/api/niworkflows-anat-coregistration-1.pdf b/master/api/niworkflows-anat-coregistration-1.pdf
index 4022080d2c5..c5756529340 100644
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diff --git a/master/api/niworkflows-anat-freesurfer-1.pdf b/master/api/niworkflows-anat-freesurfer-1.pdf
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diff --git a/master/api/niworkflows-anat-skullstrip-1.pdf b/master/api/niworkflows-anat-skullstrip-1.pdf
index e04ef275782..464a80d1a1f 100644
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diff --git a/master/api/niworkflows-func-util-1.pdf b/master/api/niworkflows-func-util-1.pdf
index 15e5b6acc9f..b23f4f903e2 100644
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diff --git a/master/api/niworkflows-func-util-2.pdf b/master/api/niworkflows-func-util-2.pdf
index cd92fc351fd..4355a40b705 100644
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diff --git a/master/api/niworkflows-func-util-3.pdf b/master/api/niworkflows-func-util-3.pdf
index 1b1f3dff270..1697d6d5a60 100644
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diff --git a/master/api/niworkflows-workflows-epi-refmap-1.pdf b/master/api/niworkflows-workflows-epi-refmap-1.pdf
index ec061537e96..63fc5cb422a 100644
Binary files a/master/api/niworkflows-workflows-epi-refmap-1.pdf and b/master/api/niworkflows-workflows-epi-refmap-1.pdf differ
diff --git a/master/api/niworkflows.interfaces.confounds.html b/master/api/niworkflows.interfaces.confounds.html
index d0d82544145..4f4ad1cffb7 100644
--- a/master/api/niworkflows.interfaces.confounds.html
+++ b/master/api/niworkflows.interfaces.confounds.html
@@ -450,14 +450,14 @@
 indicates that the first and second exponential terms should be added.
 To retain the original terms, 1 must be included in the list.

 
  • variables (list of str) – List of variables for which exponential terms should be computed.
    • 
-
  • data (DataFrame) – Table of values of all observations of all variables.
    • 
+
  • data (DataFrame) – Table of values of all observations of all variables.
    • 
 
 
 
    Returns:
    
 
      
 
    • variables_exp (list) – A list of variables to include in the final data frame after adding
 the specified exponential terms.
      • 
-
    • data_exp (DataFrame) – Table of values of all observations of all variables, including any
+
    • data_exp (DataFrame) – Table of values of all observations of all variables, including any
 specified exponential terms.
      • 
 
    
 
    
@@ -474,13 +474,13 @@
 
      
 
    • expression (str) – Formula expression: either a single variable or a variable group
 paired with an operation (exponentiation or differentiation).
      • 
-
    • parent_data (DataFrame) – The source data for the model expansion.
      • 
+
    • parent_data (DataFrame) – The source data for the model expansion.
      • 
 
    
 
    
 
    Returns:
    
 
      
 
    • variables (list) – A list of variables in the provided formula expression.
      • 
-
    • data (DataFrame) – A tabulation of all terms in the provided formula expression.
      • 
+
    • data (DataFrame) – A tabulation of all terms in the provided formula expression.
      • 
 
    
 
    
 
    
@@ -524,7 +524,7 @@
 
    Temporal derivatives and exponential terms are computed for all terms
 in the grouping symbols that they adjoin.
    
 
-
  • parent_data (DataFrame) – A tabulation of all values usable in the model formula. Each additive
+
  • parent_data (DataFrame) – A tabulation of all values usable in the model formula. Each additive
 term in model_formula should correspond either to a variable in this
 data frame or to instructions for operating on a variable (for
 instance, computing temporal derivatives or exponential terms).
    • 
@@ -534,7 +534,7 @@
 
      
 
    • variables (list of str) – A list of variables included in the model parsed from the provided
 formula.
      • 
-
    • data (DataFrame) – All values in the complete model.
      • 
+
    • data (DataFrame) – All values in the complete model.
      • 
 
    
 
    
 
    
@@ -548,7 +548,7 @@
 
    
 
    Parameters:
    
 
      
-
    • data (DataFrame) – A tabulation of observations from which spike regressors should be
+
    • data (DataFrame) – A tabulation of observations from which spike regressors should be
 estimated.
      • 
 
    • criteria (dict of (str, '>' or '<' or float)) – Criteria for generating a spike regressor. If, for a given frame, the
 value of the variable corresponding to the key exceeds the threshold
@@ -575,7 +575,7 @@
 
      data – The input DataFrame with a column for each spike regressor.
      
 
      
 
      Return type:
      
-
      DataFrame
      
+
      DataFrame
      
 
      
 
    
 
    References
    
@@ -601,14 +601,14 @@
 To retain the original terms, 0 must be included in the list.
    
 
  • variables (list of str) – List of variables for which temporal derivative terms should be
 computed.
    • 
-
  • data (DataFrame) – Table of values of all observations of all variables.
    • 
+
  • data (DataFrame) – Table of values of all observations of all variables.
    • 
 
 
 
    Returns:
    
 
      
 
    • variables_deriv (list) – A list of variables to include in the final data frame after adding
 the specified derivative terms.
      • 
-
    • data_deriv (DataFrame) – Table of values of all observations of all variables, including any
+
    • data_deriv (DataFrame) – Table of values of all observations of all variables, including any
 specified derivative terms.
      • 
 
    
 
    
diff --git a/master/api/niworkflows.viz.html b/master/api/niworkflows.viz.html
index 7c4b4152b3d..58c319401f2 100644
--- a/master/api/niworkflows.viz.html
+++ b/master/api/niworkflows.viz.html
@@ -363,7 +363,7 @@
 
  • sort_rows (str or False or None) – Apply a clustering algorithm to reorganize the rows of the carpet.
 "", False, and None skip clustering sorting.
 "linkage" uses linkage hierarchical clustering
-scipy.cluster.hierarchy.linkage.
+scipy.cluster.hierarchy.linkage.
 Any other value that Python evaluates to True will use the
 default clustering, which is sklearn.cluster.ward_tree.
    • 
 
diff --git a/master/api/niworkflows.viz.plots.html b/master/api/niworkflows.viz.plots.html
index 25379ec1701..60157fe37f3 100644
--- a/master/api/niworkflows.viz.plots.html
+++ b/master/api/niworkflows.viz.plots.html
@@ -516,7 +516,7 @@
 
  • sort_rows (str or False or None) – Apply a clustering algorithm to reorganize the rows of the carpet.
 "", False, and None skip clustering sorting.
 "linkage" uses linkage hierarchical clustering
-scipy.cluster.hierarchy.linkage.
+scipy.cluster.hierarchy.linkage.
 Any other value that Python evaluates to True will use the
 default clustering, which is sklearn.cluster.ward_tree.
    •