10_used_package.Rmd

# 使用パッケージ

## 必須

### 全般

- remotes
- usethis
- installr
- rstudioapi
- fs
- here
- eply
- MilesMcBain/breakerofchains

### パッケージ管理

- BiocManager
- pacman

### データ分析

- tidyverse
- openxlsx
- dummies
- data.table

### 統計解析

- tidymodels
- survival
- survminer

### 表

- tableone
- gt
- gtsummary
- DT
- flextable
- ftExtra

### グラフ・可視化

- DiagrammeR
- DiagrammeRsvg
- psych
- summarytools
- skimr
- DataExplorer
- ggsignif
- patchwork
- VennDiagram

### R Markdown

- rmarkdown
- revealjs
- knitr
- rmdformats

### アプリ

- Shiny
- rsconnect
- shinycssloaders

### スクレイピング

- rvest

### Reproducible

- datapasta

### Docker

- docker
- liftr

```R
install.packages(c(
"remotes", "usethis",  "installr", "rstudioapi", "fs", "eply", "here", 
"BiocManager", "pacman", 
"tidyverse", "openxlsx", "dummies", "data.table", 
"tidymodels", "survival", "survminer", 
"tableone", "gt", "gtsummary", "DT", "flextable", "ftExtra", 
"DiagrammeR", "DiagrammeRsvg", "psych", "summarytools", "skimr", "DataExplorer", "ggsignif", "patchwork", "VennDiagram", 
"rmarkdown", "revealjs", "knitr", "rmdformats", 
"Shiny", "rsconnect", "shinycssloaders", 
"rvest", 
"datapasta", 
"docker", "liftr"
), dependencies=TRUE)

remotes::install_github("MilesMcBain/breakerofchains")
```

## 推奨

### 汎用

- devtools
- reticulate
- codicR
- conflicted
- lintr
- drake

### 並列処理

- doParallel

### R学習

- swirl
- learnr

### グラフ

- ggsci
- ggrepel
- GGally
 - officer
 - stargazer
 - myprettyreport
- corrplot
- corrr
- plotly

### RStan

- rstan

### LaTeX

- tinytex

### SAS

- SASmarkdown

### 疫学

- Epi
- epiR
- comorbidity
- icd
- ggdag

### データ分析・機械学習

- smartdata
- bit64

### スクレイピング

- RSelenium

### 時間計測

- tictoc

### 資料作成

- xaringan
- export
- INWTlab/ireports
	- remotes::install_github("INWTlab/ireports")

### アドイン

- colourPicker
	- colourPicker
- ggThemeAssist
	- ggplot Theme Assistant
- styler
	- style active file