Dockerfile

FROM sagebionetworks/rstudio:4.1.0-efb64703

LABEL maintainer="team@nlpsandbox.io"
LABEL description="Example notebooks for interacting with the NLP Sandbox API"

# Create conda environments
COPY conda /tmp/conda
RUN conda init bash \
    && conda env create -f /tmp/conda/nlpsandbox/environment.yml \
    && rm -fr /tmp/conda \
    # Fix libssl issue that affects conda env used with reticulate
    && cp /usr/lib/x86_64-linux-gnu/libssl.so.1.1 \
        /opt/miniconda/envs/nlpsandbox/lib/libssl.so.1.1 \
    && conda activate base || true \
    && echo "conda activate nlpsandbox" >> ~/.bashrc

# Install R dependencies
COPY renv.lock /tmp/renv.lock
RUN install2.r --error renv \
    && R -e "renv::consent(provided=TRUE)" \
    && R -e "renv::restore(lockfile='/tmp/renv.lock')" \
    && rm -rf /tmp/downloaded_packages/ /tmp/*.rds /tmp/renv.lock \
    && R -e "extrafont::font_import(prompt=FALSE)"

WORKDIR /
COPY docker-entrypoint.sh .
RUN chmod +x docker-entrypoint.sh

ENTRYPOINT ["/docker-entrypoint.sh"]
CMD ["rstudio"]
# CMD ["jupyter"]