diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index bc660432d9..b1bbccb472 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -10693,7 +10693,7 @@ xref: Wikipedia:Excretory_system xref: XAO:0000143 xref: ZFA:0000163 intersection_of: UBERON:8450002 ! excretory system -intersection_of: capable_of GO:0097254 +intersection_of: capable_of GO:0097254 ! renal tubular secretion relationship: existence_ends_during UBERON:0000066 ! fully formed stage relationship: never_in_taxon NCBITaxon:110815 {source="Wikipedia"} relationship: never_in_taxon NCBITaxon:147099 {source="Wikipedia:Acoelomorpha"} @@ -44335,7 +44335,7 @@ xref: Wikipedia:Bronchus xref: XAO:0000121 is_a: UBERON:0000117 ! respiratory tube relationship: located_in UBERON:0002224 ! thoracic cavity -relationship: never_in_taxon NCBITaxon:8507 {source="Wikipedia"} +relationship: never_in_taxon NCBITaxon:8507 {source="Wikipedia"} ! Sphenodon relationship: part_of UBERON:0007196 ! tracheobronchial tree property_value: depicted_by http://upload.wikimedia.org/wikipedia/commons/1/18/Respiratory_system_complete_numbered.svg xsd:anyURI property_value: external_definition "Each of the two primary divisions of the trachea leading respectively into the right and the left lung. [Dorian_AF, Elsevier's_encyclopaedic_dictionary_of_medicine, Part_B:_Anatomy_(1988)_Amsterdam_etc.:_Elsevier][VHOG]" xsd:string {date_retrieved="2012-09-17", external_class="VHOG:0000262", ontology="VHOG", source="http://bgee.unil.ch/"} @@ -142976,7 +142976,7 @@ relationship: never_in_taxon NCBITaxon:8782 ! Aves relationship: only_in_taxon NCBITaxon:32524 {source="Wikipedia"} ! Amniota relationship: part_of UBERON:0006635 {source="ISBN:0073040584"} ! anterior abdominal wall relationship: part_of UBERON:0014478 ! rib skeletal system -relationship: present_in_taxon NCBITaxon:8508 {source="Wikipedia"} +relationship: present_in_taxon NCBITaxon:8508 {source="Wikipedia"} ! Sphenodon punctatus property_value: taxon_notes "These bones may have been derived from the ventral scales found in animals like rhipidistians, labyrinthodonts, and Acanthostega, and may be related to ventral elements of turtle plastrons" xsd:string {source="WP"} [Term] @@ -147582,7 +147582,7 @@ disjoint_from: UBERON:2000691 ! supraorbital bone relationship: has_quality PATO:0001598 {gci_relation="part_of", gci_filler="NCBITaxon:63221"} ! protruding relationship: part_of UBERON:0000209 ! tetrapod frontal bone relationship: part_of UBERON:0035849 ! orbital margin -relationship: present_in_taxon NCBITaxon:63221 +relationship: present_in_taxon NCBITaxon:63221 ! Homo sapiens neanderthalensis relationship: seeAlso FMA:53097 relationship: seeAlso FMA:57137 property_value: external_ontology_notes "see also: 'supraorbital flange'. FMA has 2 related classes, but these refer to the line and surface" xsd:string {external_ontology="FMA"} @@ -156551,7 +156551,7 @@ def: "A prominent bulge, or projection, of the occipital bone at the back of the xref: Wikipedia:Occipital_bun is_a: UBERON:0005913 ! zone of bone organ relationship: part_of UBERON:0001676 ! occipital bone -relationship: present_in_taxon NCBITaxon:63221 +relationship: present_in_taxon NCBITaxon:63221 ! Homo sapiens neanderthalensis property_value: depicted_by https://upload.wikimedia.org/wikipedia/commons/d/db/Neanderthal_profile.png xsd:anyURI property_value: taxon_notes "Occipital buns are important in scientific descriptions of classic Neanderthal crania. While common among many of mankind's ancestors, primarily robust relatives rather than gracile, the protrusion is relatively rare in modern Homo sapiens.." xsd:string {source="Wikipedia:Occipital_bun", taxon="NCBITaxon:63221"} @@ -156669,7 +156669,7 @@ def: "The suprainiac fossa is an elliptic depression on the occiput above the su xref: Wikipedia:Suprainiac_fossa is_a: UBERON:0004704 ! bone fossa relationship: part_of UBERON:0003129 {source="Wikipedia"} ! skull -relationship: present_in_taxon NCBITaxon:63221 {source="Wikipedia:Neanderthal_anatomy"} +relationship: present_in_taxon NCBITaxon:63221 {source="Wikipedia:Neanderthal_anatomy"} ! Homo sapiens neanderthalensis [Term] id: UBERON:0013462 @@ -156732,7 +156732,7 @@ synonym: "retromolar gap" EXACT [Wikipedia:Retromolar_space] xref: Wikipedia:Retromolar_space is_a: UBERON:0000464 ! anatomical space relationship: part_of UBERON:0001684 ! mandible -relationship: present_in_taxon NCBITaxon:63221 +relationship: present_in_taxon NCBITaxon:63221 ! Homo sapiens neanderthalensis property_value: taxon_notes "Retromolar gap is found in some Neandertals because they had midfacial prognathism. This caused the lower toothrow to move forward, which led to the retromolar gap.." xsd:string {source="Wikipedia:Neanderthal_anatomy", taxon="NCBITaxon:63221"} [Term] @@ -158598,7 +158598,7 @@ comment: Contains ducts from kidney, gonads, terminal parts of intestine[ISBN:04 synonym: "priapia" RELATED PLURAL [] is_a: UBERON:0008811 ! intromittent organ relationship: has_part UBERON:0001245 ! anus -relationship: only_in_taxon NCBITaxon:8075 +relationship: only_in_taxon NCBITaxon:8075 ! Atheriniformes relationship: part_of UBERON:0000033 ! head relationship: present_in_taxon NCBITaxon:270656 @@ -163469,7 +163469,7 @@ intersection_of: UBERON:0003821 ! metapodium bone intersection_of: has_fused_element UBERON:0013582 ! metapodium bone 2 intersection_of: has_fused_element UBERON:0013583 ! metapodium bone 3 intersection_of: has_fused_element UBERON:0013584 ! metapodium bone 4 -relationship: present_in_taxon NCBITaxon:51337 +relationship: present_in_taxon NCBITaxon:51337 ! Jaculus jaculus [Term] id: UBERON:0014763 @@ -163486,7 +163486,7 @@ intersection_of: has_fused_element UBERON:0003653 ! metatarsal bone of digit 4 relationship: has_developmental_contribution_from UBERON:0003651 {gci_filler="NCBITaxon:51337", gci_relation="part_of", source="PMID:22135653"} ! metatarsal bone of digit 2 relationship: has_developmental_contribution_from UBERON:0003652 {gci_filler="NCBITaxon:51337", gci_relation="part_of", source="PMID:22135653"} ! metatarsal bone of digit 3 relationship: has_developmental_contribution_from UBERON:0003653 {gci_filler="NCBITaxon:51337", gci_relation="part_of", source="PMID:22135653"} ! metatarsal bone of digit 4 -relationship: present_in_taxon NCBITaxon:51337 +relationship: present_in_taxon NCBITaxon:51337 ! Jaculus jaculus property_value: taxon_notes "The cannon bone of the 3-toed jerboa (jaculus jaculus) is the postnatal fusion of the 3 central metatarsals, which are distinct ossified elements prenatally" xsd:string {source="PMID:22135653", taxon="NCBITaxon:51337"} [Term] @@ -167847,7 +167847,7 @@ intersection_of: has_quality PATO:0001154 ! elongated intersection_of: has_quality PATO:0001598 ! protruding intersection_of: has_quality PATO:0002255 ! grooved intersection_of: intersects_midsagittal_plane_of UBERON:0003672 ! dentition -relationship: only_in_taxon NCBITaxon:40151 +relationship: only_in_taxon NCBITaxon:40151 ! Monodon monoceros [Term] id: UBERON:0015853 @@ -171045,7 +171045,7 @@ id: UBERON:0017624 name: pseudoclasper def: "One or more pairs of stiff ossified lobes or prongs found in the tip of the intromittent organ of Bythitoidei." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] is_a: UBERON:0004529 ! anatomical projection -relationship: only_in_taxon NCBITaxon:181400 +relationship: only_in_taxon NCBITaxon:181400 ! Bythitoidei relationship: part_of UBERON:0008811 ! intromittent organ [Term] @@ -188482,7 +188482,7 @@ comment: Uses to construct scent mounds is_a: UBERON:0000456 {source="cjm"} ! secretion of exocrine gland relationship: has_part UBERON:0001088 ! urine relationship: has_part UBERON:0013212 ! anal sac gland secretion -relationship: only_in_taxon NCBITaxon:29132 +relationship: only_in_taxon NCBITaxon:29132 ! Castoridae [Term] id: UBERON:0036016 @@ -188492,7 +188492,7 @@ xref: BTO:0000605 xref: MESH:D006722 xref: Wikipedia:Honey is_a: UBERON:0036017 ! regurgitated substance -relationship: only_in_taxon NCBITaxon:7434 ! Aculeata +relationship: only_in_taxon NCBITaxon:7434 ! Aculeata [Term] id: UBERON:0036017 @@ -188518,7 +188518,7 @@ id: UBERON:0036019 name: castor sac def: "A non-glandular region of the anal wall in which castoreum is produced." [PMID:24415179] is_a: UBERON:0008978 ! anal sac -relationship: only_in_taxon NCBITaxon:29132 +relationship: only_in_taxon NCBITaxon:29132 ! Castoridae [Term] id: UBERON:0036043 @@ -211733,7 +211733,7 @@ synonym: "annuli" BROAD PLURAL [AAO:0010058] synonym: "annulus" BROAD [] synonym: "caecilian annulus" EXACT [] is_a: UBERON:3000977 ! body external integument structure -relationship: only_in_taxon NCBITaxon:43453 +relationship: only_in_taxon NCBITaxon:43453 ! Caecilia [Term] id: UBERON:3010060 @@ -224493,6 +224493,25 @@ relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 relationship: has_part UBERON:0001384 ! primary motor cortex relationship: has_part UBERON:0016634 ! premotor cortex +[Term] +id: UBERON:8440078 +name: teat +def: "The projection from the mammary glands of mammals from which milk flows or is ejected for the purpose of feeding young. As compared to a nipple, where the individual lactiferous ducts open directly to the outside world, a teat has lactiferous ducts that converge on a large lactiferous sac at the base of the teat and there is a single, large duct that runs through the teat with an outlet at the end of the teat." [https://orcid.org/0000-0002-1572-1316, WikipediaVersioned:Teat&oldid=1107850923] +comment: While many lay sources treat nipple and teat as synonyms, mammalogists do not. {xref="https://orcid.org/0000-0002-1572-1316"} +is_a: UBERON:0000475 ! organism subdivision +relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 +property_value: editor_note "Taxon restriction should be added on this term when possible." xsd:string +property_value: seeAlso https://github.com/obophenotype/uberon/issues/2353 xsd:string + +[Term] +id: UBERON:8440079 +name: teat skin +def: "The skin that is part of the teat." [https://orcid.org/0000-0001-7258-9596] +intersection_of: UBERON:0001003 ! skin epidermis +intersection_of: part_of UBERON:8440078 ! teat +relationship: dc-contributor http://orcid.org/0000-0001-7258-9596 +property_value: seeAlso https://github.com/obophenotype/uberon/issues/2353 xsd:string + [Term] id: UBERON:8450001 name: egg follicle