Add 'Elevated urine biliverdin level HP:0025743'

[ImkeTammen]

Dear upheno2 team,

can 'Elevated urine biliverdin level HP:0025743' be added to upheno2? I was hoping to add this term to the clinical synopsis for an OMIA entry: https://www.omia.org/OMIA002917/9615/. The term exists in HPO but nou upheno2.

Kind regards,

Imke

[matentzn]

Thank you @ImkeTammen

I can see the HP term in uPheno: https://www.ebi.ac.uk/ols4/ontologies/upheno/classes/http%253A%252F%252Fpurl.obolibrary.org%252Fobo%252FHP_0025743

Do you mean to add a term with a uPheno id? I think you mean that, right, because you cant use HP ids (as they are human-specific) in OMIA.

[ImkeTammen]

Dear Nico,

That is interesting - when I search the upheno2 Monarch look up for 'biliverdin' this entry does not come up - https://ols.monarchinitiative.org/search?q=biliverdin&groupField=iri&start=0&ontology=upheno2

And our look up in OMIA to pheno2 didn't find the term either?

If a upheno2 ID could be created that would be great but I have used some HPO terms at the moment in OMIA for the moment if I can't seem to find a good MPO or upheno2 term.

I have a student starting soon doing a small project on adding upheno2 terms to OMIA and if possible it might be a good time to discuss best approach based on current experiences ...

[matentzn]

Oh yes the monarch OLS uPheno is way out of date - you should be using the "official OLS" now!

[ImkeTammen]

Dear Nico - so just to clarify - we should use the https://www.ebi.ac.uk/ols4/ upheno search (as there is no upheno2) now?

[matentzn]

Yes, please use https://www.ebi.ac.uk/ols4/ontologies/upheno from now on!