diff --git a/src/curation/upheno-config.yaml b/src/curation/upheno-config.yaml index 20d90654..e25b43ac 100644 --- a/src/curation/upheno-config.yaml +++ b/src/curation/upheno-config.yaml @@ -6,9 +6,9 @@ report_fail_on: none use_dosdps: TRUE dosdp_tools_options: "--obo-prefixes=true --restrict-axioms-to=logical" robot_opts: -vv -robot_java_args: -Xmx10G -timeout_external_processes: 120m -working_directory: /work/src +robot_java_args: -Xmx50G +timeout_external_processes: 500m +working_directory: /nfs/production3/spot/sw/dev/monarch/data/upheno-dev/src overwrite_matches: False skip_pattern_download: True max_upheno_id: 9999999 diff --git a/src/scripts/upheno_pipeline_singularity.sh b/src/scripts/upheno_pipeline_singularity.sh old mode 100644 new mode 100755