From 20ae4556c9400d4eeadfa5346f26a8a4536318a5 Mon Sep 17 00:00:00 2001
From: Liam Beckman <lbeckman314@gmail.com>
Date: Wed, 6 Nov 2024 10:20:50 -0800
Subject: [PATCH] Clean up Helm Charts

---
 .../.cr-release-packages/funnel-0.1.9.tgz     | Bin 7263 -> 0 bytes
 deployments/kubernetes/helm/Chart.yaml        |  24 -----
 deployments/kubernetes/helm/funnel-0.1.2.tgz  | Bin 6775 -> 0 bytes
 deployments/kubernetes/helm/local.conf        |   2 -
 .../kubernetes/helm/templates/NOTES.txt       |   5 --
 .../kubernetes/helm/templates/_helpers.tpl    |  62 -------------
 .../kubernetes/helm/templates/configmap.yaml  |  84 ------------------
 .../kubernetes/helm/templates/deployment.yaml |  51 -----------
 .../kubernetes/helm/templates/role.yaml       |  16 ----
 .../helm/templates/rolebinding.yaml           |  13 ---
 .../kubernetes/helm/templates/service.yaml    |  17 ----
 .../helm/templates/serviceaccount.yaml        |   9 --
 .../helm/templates/tests/test-connection.yaml |  15 ----
 deployments/kubernetes/helm/values.yaml       |  38 --------
 14 files changed, 336 deletions(-)
 delete mode 100644 deployments/kubernetes/helm/.cr-release-packages/funnel-0.1.9.tgz
 delete mode 100644 deployments/kubernetes/helm/Chart.yaml
 delete mode 100644 deployments/kubernetes/helm/funnel-0.1.2.tgz
 delete mode 100644 deployments/kubernetes/helm/local.conf
 delete mode 100644 deployments/kubernetes/helm/templates/NOTES.txt
 delete mode 100644 deployments/kubernetes/helm/templates/_helpers.tpl
 delete mode 100644 deployments/kubernetes/helm/templates/configmap.yaml
 delete mode 100644 deployments/kubernetes/helm/templates/deployment.yaml
 delete mode 100644 deployments/kubernetes/helm/templates/role.yaml
 delete mode 100644 deployments/kubernetes/helm/templates/rolebinding.yaml
 delete mode 100644 deployments/kubernetes/helm/templates/service.yaml
 delete mode 100644 deployments/kubernetes/helm/templates/serviceaccount.yaml
 delete mode 100644 deployments/kubernetes/helm/templates/tests/test-connection.yaml
 delete mode 100644 deployments/kubernetes/helm/values.yaml

diff --git a/deployments/kubernetes/helm/.cr-release-packages/funnel-0.1.9.tgz b/deployments/kubernetes/helm/.cr-release-packages/funnel-0.1.9.tgz
deleted file mode 100644
index 9309f792aaf6f248520d6a5ed77345f99ff502b3..0000000000000000000000000000000000000000
GIT binary patch
literal 0
HcmV?d00001

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diff --git a/deployments/kubernetes/helm/Chart.yaml b/deployments/kubernetes/helm/Chart.yaml
deleted file mode 100644
index 19bcd9f70..000000000
--- a/deployments/kubernetes/helm/Chart.yaml
+++ /dev/null
@@ -1,24 +0,0 @@
-apiVersion: v2
-name: funnel
-description: A Helm chart for Kubernetes
-
-# A chart can be either an 'application' or a 'library' chart.
-#
-# Application charts are a collection of templates that can be packaged into versioned archives
-# to be deployed.
-#
-# Library charts provide useful utilities or functions for the chart developer. They're included as
-# a dependency of application charts to inject those utilities and functions into the rendering
-# pipeline. Library charts do not define any templates and therefore cannot be deployed.
-type: application
-
-# This is the chart version. This version number should be incremented each time you make changes
-# to the chart and its templates, including the app version.
-# Versions are expected to follow Semantic Versioning (https://semver.org/)
-version: 0.1.0
-
-# This is the version number of the application being deployed. This version number should be
-# incremented each time you make changes to the application. Versions are not expected to
-# follow Semantic Versioning. They should reflect the version the application is using.
-# It is recommended to use it with quotes.
-appVersion: "1.16.0"
diff --git a/deployments/kubernetes/helm/funnel-0.1.2.tgz b/deployments/kubernetes/helm/funnel-0.1.2.tgz
deleted file mode 100644
index bb33009c3cb6e56f943a749db2b78d16158a015d..0000000000000000000000000000000000000000
GIT binary patch
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diff --git a/deployments/kubernetes/helm/local.conf b/deployments/kubernetes/helm/local.conf
deleted file mode 100644
index ebc7f568f..000000000
--- a/deployments/kubernetes/helm/local.conf
+++ /dev/null
@@ -1,2 +0,0 @@
-storage:
-  className: standard
diff --git a/deployments/kubernetes/helm/templates/NOTES.txt b/deployments/kubernetes/helm/templates/NOTES.txt
deleted file mode 100644
index ea8e30746..000000000
--- a/deployments/kubernetes/helm/templates/NOTES.txt
+++ /dev/null
@@ -1,5 +0,0 @@
-1. To access the Funnel application, use the following instructions:
-
-To access the service locally, use:
-  kubectl --namespace {{ .Release.Namespace }} port-forward svc/{{ include "funnel.fullname" . }} 8080:8000
-  echo "Visit http://127.0.0.1:8080"
diff --git a/deployments/kubernetes/helm/templates/_helpers.tpl b/deployments/kubernetes/helm/templates/_helpers.tpl
deleted file mode 100644
index bee3e48c5..000000000
--- a/deployments/kubernetes/helm/templates/_helpers.tpl
+++ /dev/null
@@ -1,62 +0,0 @@
-{{/*
-Expand the name of the chart.
-*/}}
-{{- define "funnel.name" -}}
-{{- default .Chart.Name .Values.nameOverride | trunc 63 | trimSuffix "-" }}
-{{- end }}
-
-{{/*
-Create a default fully qualified app name.
-We truncate at 63 chars because some Kubernetes name fields are limited to this (by the DNS naming spec).
-If release name contains chart name it will be used as a full name.
-*/}}
-{{- define "funnel.fullname" -}}
-{{- if .Values.fullnameOverride }}
-{{- .Values.fullnameOverride | trunc 63 | trimSuffix "-" }}
-{{- else }}
-{{- $name := default .Chart.Name .Values.nameOverride }}
-{{- if contains $name .Release.Name }}
-{{- .Release.Name | trunc 63 | trimSuffix "-" }}
-{{- else }}
-{{- printf "%s-%s" .Release.Name $name | trunc 63 | trimSuffix "-" }}
-{{- end }}
-{{- end }}
-{{- end }}
-
-{{/*
-Create chart name and version as used by the chart label.
-*/}}
-{{- define "funnel.chart" -}}
-{{- printf "%s-%s" .Chart.Name .Chart.Version | replace "+" "_" | trunc 63 | trimSuffix "-" }}
-{{- end }}
-
-{{/*
-Common labels
-*/}}
-{{- define "funnel.labels" -}}
-helm.sh/chart: {{ include "funnel.chart" . }}
-{{ include "funnel.selectorLabels" . }}
-{{- if .Chart.AppVersion }}
-app.kubernetes.io/version: {{ .Chart.AppVersion | quote }}
-{{- end }}
-app.kubernetes.io/managed-by: {{ .Release.Service }}
-{{- end }}
-
-{{/*
-Selector labels
-*/}}
-{{- define "funnel.selectorLabels" -}}
-app.kubernetes.io/name: {{ include "funnel.name" . }}
-app.kubernetes.io/instance: funnel
-{{- end }}
-
-{{/*
-Create the name of the service account to use
-*/}}
-{{- define "funnel.serviceAccountName" -}}
-{{- if .Values.serviceAccount.create }}
-{{- default (include "funnel.fullname" .) .Values.serviceAccount.name }}
-{{- else }}
-{{- default "default" .Values.serviceAccount.name }}
-{{- end }}
-{{- end }}
diff --git a/deployments/kubernetes/helm/templates/configmap.yaml b/deployments/kubernetes/helm/templates/configmap.yaml
deleted file mode 100644
index 6f8a05366..000000000
--- a/deployments/kubernetes/helm/templates/configmap.yaml
+++ /dev/null
@@ -1,84 +0,0 @@
-apiVersion: v1
-kind: ConfigMap
-metadata:
-  name: funnel-config
-data:
-  funnel-server-config.yaml: |-
-    Database: boltdb
-
-    Compute: kubernetes
-
-    Logger:
-      Level: debug
-
-    Kubernetes:
-      # The executor used to execute tasks. Available executors: docker, kubernetes
-      Executor: "kubernetes"
-      DisableJobCleanup: false
-      DisableReconciler: false
-      ReconcileRate: 5m
-      Namespace: default
-      Template: |
-        apiVersion: batch/v1
-        kind: Job
-        metadata:
-          ## DO NOT CHANGE NAME
-          name: {{.TaskId}}
-          namespace: {{.Namespace}}
-        spec:
-          backoffLimit: 0
-          completions: 1
-          template:
-            spec:
-              restartPolicy: Never
-              serviceAccountName: funnel-sa
-              containers:
-                - name: {{printf "funnel-worker-%s" .TaskId}}
-                  image: quay.io/ohsu-comp-bio/funnel:latest
-                  imagePullPolicy: IfNotPresent
-                  args:
-                    - "worker"
-                    - "run"
-                    - "--config"
-                    - "/etc/config/funnel-worker-config.yaml"
-                    - "--taskID"
-                    - {{.TaskId}}
-                  resources:
-                      requests:
-                        cpu: {{if ne .Cpus 0 -}}{{.Cpus}}{{ else }}{{"100m"}}{{end}}
-                        memory: {{if ne .RamGb 0.0 -}}{{printf "%.0fG" .RamGb}}{{else}}{{"16M"}}{{end}}
-                        ephemeral-storage: {{if ne .DiskGb 0.0 -}}{{printf "%.0fG" .DiskGb}}{{else}}{{"100M"}}{{end}}
-                  volumeMounts:
-                    - name: {{printf "funnel-storage-%s" .TaskId}}
-                      mountPath: {{printf "/opt/funnel/funnel-work-dir/%s" .TaskId}}
-                    - name: config-volume
-                      mountPath: /etc/config
-
-                  securityContext:
-                    privileged: true
-
-              volumes:
-                - name: {{printf "funnel-storage-%s" .TaskId}}
-                  emptyDir: {}
-                - name: config-volume
-                  configMap:
-                    name: funnel-config    
-
-  funnel-worker-config.yaml: |-
-    Database: boltdb
-    BoltDB:
-      Path: /opt/funnel/funnel-work-dir/funnel.bolt.db
-    Compute: kubernetes
-    Kubernetes:
-      Executor: "kubernetes"
-    Logger:
-      Level: debug
-    RPCClient:
-      MaxRetries: 3
-      Timeout: 30s
-    EventWriters:
-      - rpc
-      - log
-    Server:
-      HostName: ""
-      RPCPort: 9090
diff --git a/deployments/kubernetes/helm/templates/deployment.yaml b/deployments/kubernetes/helm/templates/deployment.yaml
deleted file mode 100644
index c4a56a580..000000000
--- a/deployments/kubernetes/helm/templates/deployment.yaml
+++ /dev/null
@@ -1,51 +0,0 @@
-apiVersion: apps/v1
-kind: Deployment
-metadata:
-  name: {{ include "funnel.fullname" . }}
-  labels:
-    {{- include "funnel.labels" . | nindent 4 }}
-spec:
-  replicas: 1
-  selector:
-    matchLabels:
-      {{- include "funnel.selectorLabels" . | nindent 6 }}
-  template:
-    metadata:
-      labels:
-        {{- include "funnel.labels" . | nindent 8 }}
-    spec:
-      serviceAccountName: {{ include "funnel.serviceAccountName" . }}
-      containers:
-        - name: funnel
-          image: "{{ .Values.image.repository }}:{{ .Values.image.tag | default .Chart.AppVersion }}"
-          imagePullPolicy: Always
-          command:
-            - 'funnel'
-            - 'server'
-            - 'run'
-            - '--config'
-            - '/etc/config/funnel-server-config.yaml'
-          resources:
-            requests:
-              cpu: {{ .Values.resources.requests.cpu }}
-              memory: {{ .Values.resources.requests.memory }}
-            limits:
-              cpu: {{ .Values.resources.limits.cpu }}
-              memory: {{ .Values.resources.limits.memory }}
-          ports:
-            - name: http
-              containerPort: 8000
-            - name: rpc
-              containerPort: 9090
-          volumeMounts:
-            - name: funnel-deployment-storage
-              mountPath: /opt/funnel/funnel-work-dir
-            - name: config-volume
-              mountPath: /etc/config
-      volumes:
-        - name: funnel-deployment-storage
-          persistentVolumeClaim:
-            claimName: funnel-pvc
-        - name: config-volume
-          configMap:
-            name: funnel-config
diff --git a/deployments/kubernetes/helm/templates/role.yaml b/deployments/kubernetes/helm/templates/role.yaml
deleted file mode 100644
index 9b492213d..000000000
--- a/deployments/kubernetes/helm/templates/role.yaml
+++ /dev/null
@@ -1,16 +0,0 @@
-{{- if .Values.rbac.create }}
-apiVersion: rbac.authorization.k8s.io/v1
-kind: Role
-metadata:
-  name: {{ include "funnel.fullname" . }}-role
-rules:
-  - apiGroups: [""]
-    resources: ["pods", "pods/log"]
-    verbs: ["get", "list", "watch"]
-  - apiGroups: ["batch", "extensions"]
-    resources: ["jobs"]
-    verbs: ["get", "list", "watch", "create", "update", "patch", "delete"]
-  - apiGroups: ["extensions", "apps"]
-    resources: ["deployments"]
-    verbs: ["get", "list", "watch", "create", "update", "patch", "delete"]
-{{- end }}
diff --git a/deployments/kubernetes/helm/templates/rolebinding.yaml b/deployments/kubernetes/helm/templates/rolebinding.yaml
deleted file mode 100644
index 3f216ed67..000000000
--- a/deployments/kubernetes/helm/templates/rolebinding.yaml
+++ /dev/null
@@ -1,13 +0,0 @@
-{{- if .Values.rbac.create }}
-apiVersion: rbac.authorization.k8s.io/v1
-kind: RoleBinding
-metadata:
-  name: funnel-rolebinding
-subjects:
-  - kind: ServiceAccount
-    name: funnel-sa
-roleRef:
-  kind: Role
-  name: funnel-role
-  apiGroup: rbac.authorization.k8s.io
-{{- end }}
diff --git a/deployments/kubernetes/helm/templates/service.yaml b/deployments/kubernetes/helm/templates/service.yaml
deleted file mode 100644
index c3889e775..000000000
--- a/deployments/kubernetes/helm/templates/service.yaml
+++ /dev/null
@@ -1,17 +0,0 @@
-apiVersion: v1
-kind: Service
-metadata:
-  name: funnel-service
-spec:
-  type: ClusterIP
-  ports:
-    - name: http
-      protocol: TCP
-      port: 8000
-      targetPort: 8000
-    - name: rpc
-      protocol: TCP
-  selector:
-    {{- include "funnel.selectorLabels" . | nindent 4 }}
-      port: 9090
-      targetPort: 9090
diff --git a/deployments/kubernetes/helm/templates/serviceaccount.yaml b/deployments/kubernetes/helm/templates/serviceaccount.yaml
deleted file mode 100644
index c96e6aed1..000000000
--- a/deployments/kubernetes/helm/templates/serviceaccount.yaml
+++ /dev/null
@@ -1,9 +0,0 @@
-{{- if .Values.rbac.create }}
-apiVersion: v1
-kind: ServiceAccount
-metadata:
-  name: funnel-sa
-  labels:
-    {{- include "funnel.labels" . | nindent 4 }}
-automountServiceAccountToken: true
-{{- end }}
diff --git a/deployments/kubernetes/helm/templates/tests/test-connection.yaml b/deployments/kubernetes/helm/templates/tests/test-connection.yaml
deleted file mode 100644
index cb2d151cc..000000000
--- a/deployments/kubernetes/helm/templates/tests/test-connection.yaml
+++ /dev/null
@@ -1,15 +0,0 @@
-apiVersion: v1
-kind: Pod
-metadata:
-  name: "{{ include "funnel.fullname" . }}-test-connection"
-  labels:
-    {{- include "funnel.labels" . | nindent 4 }}
-  annotations:
-    "helm.sh/hook": test
-spec:
-  containers:
-    - name: wget
-      image: busybox
-      command: ['wget']
-      args: ['{{ include "funnel.fullname" . }}:{{ .Values.service.port }}']
-  restartPolicy: Never
diff --git a/deployments/kubernetes/helm/values.yaml b/deployments/kubernetes/helm/values.yaml
deleted file mode 100644
index 0312e7dd8..000000000
--- a/deployments/kubernetes/helm/values.yaml
+++ /dev/null
@@ -1,38 +0,0 @@
-replicaCount: 1
-
-image:
-  repository: quay.io/ohsu-comp-bio/funnel
-  tag: latest
-  pullPolicy: IfNotPresent
-
-resources:
-  requests:
-    cpu: 100m
-    memory: 100Mi
-  limits:
-    cpu: 1000m
-    memory: 1Gi
-
-server:
-  hostname: ""
-  rpcPort: 9090
-
-storage:
-  enabled: true
-  size: 10Gi
-  path: /mnt/data
-  pv:
-    enabled: true
-    reclaimPolicy: Retain
-
-rbac:
-  create: true
-
-service:
-  type: ClusterIP
-  httpPort: 8000
-  rpcPort: 9090
-
-serviceAccount:
-  create: true
-  name: funnel-sa