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Ketcher + dative bonds #52

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skearnes opened this issue Oct 12, 2020 · 3 comments
Open

Ketcher + dative bonds #52

skearnes opened this issue Oct 12, 2020 · 3 comments
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@skearnes
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It would be great if Ketcher supported dative bonds. We could either try to add this functionality ourselves or find another editor that already supports this feature.

@skearnes
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Opened an issue: epam/ketcher#68

I don't know anything about their codebase, but it seems like some additions to https://github.com/epam/ketcher/blob/master/src/script/chem/struct/bond.js and its dependencies might be a good place to start.

Dative bonds have support in v3000 molfiles as bond type 9; see http://help.accelrysonline.com/ulm/onelab/1.0/content/ulm_pdfs/direct/reference/ctfileformats2016.pdf.

@skearnes skearnes transferred this issue from open-reaction-database/ord-schema Oct 16, 2020
@skearnes skearnes transferred this issue from open-reaction-database/ord-editor May 30, 2022
@skearnes
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#58 adds dative bonds in molfiles; we still need to get them into the SMILES.

@skearnes skearnes self-assigned this Jun 26, 2022
@bdeadman
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Confirmed that Ketcher can now create dative bonds in ORD, and the molfile shows dative bonds as type "9". I haven't found confirmation that this is the correct value to describe dative bonds.

The SMILES string is not generated when the structure includes a dative bond.

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