From dbc942b6298d2bab89f16b511c8fa1c67b4482fb Mon Sep 17 00:00:00 2001
From: Carlos Cruz <me@carcruzcast.com>
Date: Mon, 2 Dec 2024 23:23:57 +0000
Subject: [PATCH] [Platform]: fix the evidence page and publication across UI
 (#587)

* fix: evidence page

* fix: publication issues
---
 .../src/evidence/GWASCredibleSets/Body.jsx        | 15 ++++++++-------
 .../src/evidence/GWASCredibleSets/Summary.jsx     |  2 +-
 .../PublicationsDrawer/PublicationWrapper.jsx     |  2 +-
 3 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/packages/sections/src/evidence/GWASCredibleSets/Body.jsx b/packages/sections/src/evidence/GWASCredibleSets/Body.jsx
index 8d713562c..21750ec98 100644
--- a/packages/sections/src/evidence/GWASCredibleSets/Body.jsx
+++ b/packages/sections/src/evidence/GWASCredibleSets/Body.jsx
@@ -18,7 +18,7 @@ import { dataTypesMap } from "../../dataTypes";
 import GWAS_CREDIBLE_SETS_QUERY from "./sectionQuery.gql";
 import { mantissaExponentComparator } from "../../utils/comparators";
 
-function getColumns() {
+function getColumns(targetSymbol) {
   return [
     {
       id: "credibleSet",
@@ -51,9 +51,7 @@ function getColumns() {
       id: "study",
       label: "Study",
       renderCell: ({ credibleSet }) => {
-        return (
-          <Link to={`/study/${credibleSet?.study.id}`}>{credibleSet?.study.id}</Link>
-        );
+        return <Link to={`/study/${credibleSet?.study.id}`}>{credibleSet?.study.id}</Link>;
       },
     },
     {
@@ -104,7 +102,8 @@ function getColumns() {
       id: "confidence",
       label: "Fine-mapping confidence",
       sortable: true,
-      tooltip: "Fine-mapping confidence based on the quality of the linkage-desequilibrium information available and fine-mapping method",
+      tooltip:
+        "Fine-mapping confidence based on the quality of the linkage-desequilibrium information available and fine-mapping method",
       renderCell: ({ credibleSet }) => {
         if (!credibleSet?.confidence) return naLabel;
         return (
@@ -148,11 +147,13 @@ function getColumns() {
     {
       id: "publication",
       label: "Publication",
-      renderCell: ({ credibleSet }) => {
+      renderCell: ({ credibleSet, disease }) => {
         const { publicationFirstAuthor, publicationDate, pubmedId } = credibleSet?.study ?? {};
         if (!publicationFirstAuthor) return naLabel;
         return (
           <PublicationsDrawer
+            name={disease.name}
+            symbol={targetSymbol}
             entries={[{ name: pubmedId }]}
             customLabel={`${publicationFirstAuthor} et al. (${new Date(
               publicationDate
@@ -170,7 +171,7 @@ function Body({ id, label, entity }) {
   const { ensgId, efoId } = id;
   const variables = { ensemblId: ensgId, efoId, size: sectionsBaseSizeQuery };
 
-  const columns = getColumns();
+  const columns = getColumns(label.symbol);
 
   const request = useQuery(GWAS_CREDIBLE_SETS_QUERY, {
     variables,
diff --git a/packages/sections/src/evidence/GWASCredibleSets/Summary.jsx b/packages/sections/src/evidence/GWASCredibleSets/Summary.jsx
index fe0a6ca2d..a6ed74d93 100644
--- a/packages/sections/src/evidence/GWASCredibleSets/Summary.jsx
+++ b/packages/sections/src/evidence/GWASCredibleSets/Summary.jsx
@@ -20,7 +20,7 @@ function Summary() {
 }
 
 Summary.fragments = {
-  GWASCredibleSetsSummaryFragment: GWAS_CREDIBLE_SETS_SUMMARY_FRAGMENT,
+  EvidenceGWASCredibleSetsSummaryFragment: GWAS_CREDIBLE_SETS_SUMMARY_FRAGMENT,
 };
 
 export default Summary;
diff --git a/packages/ui/src/components/PublicationsDrawer/PublicationWrapper.jsx b/packages/ui/src/components/PublicationsDrawer/PublicationWrapper.jsx
index af1c2a93d..b48ebf4f6 100644
--- a/packages/ui/src/components/PublicationsDrawer/PublicationWrapper.jsx
+++ b/packages/ui/src/components/PublicationsDrawer/PublicationWrapper.jsx
@@ -161,7 +161,7 @@ function PublicationWrapper({
         </Box>
       )}
 
-      {fullTextOpen && isOpenAccess && urlAiApi && (
+      {symbol && name && fullTextOpen && isOpenAccess && urlAiApi && (
         <PublicationSummary name={name} symbol={symbol} pmcId={pmcId} />
       )}
     </Box>