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    19 repositories

    • clearml-session

      Public
      ClearML Remote - CLI for launching JupyterLab / VSCode on a remote machine
      Python
      •
      Apache License 2.0
      •12•0•0•0•Updated Feb 13, 2025Feb 13, 2025

    • bcl-convert

      Public
      debian file of bcl-convert version 4.3.6
      0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • ANARCI

      Public
      Antibody Numbering and Antigen Receptor ClassIfication
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •100•0•0•0•Updated Dec 31, 2024Dec 31, 2024

    • mhcflurry

      Public
      Peptide-MHC I binding affinity prediction
      Python
      •
      Apache License 2.0
      •59•0•0•0•Updated Nov 8, 2024Nov 8, 2024

    • clearml-agent

      Public
      ClearML Agent - ML-Ops made easy. ML-Ops scheduler & orchestration solution
      Python
      •
      Apache License 2.0
      •95•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • abstar

      Public
      VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
      Python
      •
      MIT License
      •16•0•0•0•Updated Jun 26, 2024Jun 26, 2024

    • esm-py311

      Public
      Evolutionary Scale Modeling (esm): Pretrained language models for proteins
      Python
      •
      MIT License
      •663•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • airr-standards

      Public
      AIRR Community Data Standards
      Python
      •
      Creative Commons Attribution 4.0 International
      •23•0•0•0•Updated Jun 4, 2024Jun 4, 2024

    • esm

      Public
      Evolutionary Scale Modeling (esm): Pretrained language models for proteins
      Python
      •
      MIT License
      •663•0•0•1•Updated Apr 10, 2024Apr 10, 2024

    • anndata

      Public
      Annotated data.
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •158•0•0•0•Updated Mar 12, 2024Mar 12, 2024

    • stitchr

      Public
      Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
      Python
      •
      MIT License
      •10•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • soNNia

      Public
      Python
      •
      GNU General Public License v3.0
      •4•0•0•0•Updated Sep 7, 2023Sep 7, 2023

    • pronto

      Public
      A Python frontend to (Open Biomedical) Ontologies.
      Python
      •
      MIT License
      •48•0•0•0•Updated Jul 28, 2023Jul 28, 2023

    • tfold-release

      Public
      TFold v1.0
      Python
      •
      Apache License 2.0
      •5•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • alphafold

      Public
      Open source code for AlphaFold.
      Python
      •
      Apache License 2.0
      •2.3k•0•0•0•Updated Jul 23, 2023Jul 23, 2023

    • masif

      Public
      MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
      Python
      •
      Apache License 2.0
      •158•0•0•0•Updated Jul 23, 2023Jul 23, 2023

    • transformers

      Public
      🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
      Python
      •
      Apache License 2.0
      •28k•0•0•0•Updated Jul 4, 2023Jul 4, 2023

    • LOMO

      Public
      LOMO: LOw-Memory Optimization
      Python
      •
      MIT License
      •70•0•0•0•Updated Jun 25, 2023Jun 25, 2023

    • mhcgnomes

      Public
      Parsing MHC nomenclature in the wild
      Python
      •
      Apache License 2.0
      •3•0•0•0•Updated Jun 1, 2023Jun 1, 2023