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    41 repositories

    • flscuts

      Public
      Furlan Lab Shortcuts
      R
      •
      MIT License
      •1•1•0•0•Updated Feb 16, 2025Feb 16, 2025

    • wdl-common

      Public
      WDL
      •
      BSD 3-Clause Clear License
      •10•0•0•0•Updated Feb 9, 2025Feb 9, 2025

    • HiFi-human-WGS-WDL

      Public
      WDL
      •
      BSD 3-Clause Clear License
      •37•0•0•0•Updated Feb 8, 2025Feb 8, 2025

    • longfuse

      Public
      Detect fusions in long read DNA sequencing data
      Rust
      •0•0•0•0•Updated Feb 6, 2025Feb 6, 2025

    • SpecHLA

      Public
      SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.
      C++
      •
      MIT License
      •11•0•0•0•Updated Feb 4, 2025Feb 4, 2025

    • fibertools-rs

      Public
      Tools for fiberseq data written in rust.
      Rust
      •6•0•0•0•Updated Jan 31, 2025Jan 31, 2025

    • viewmastR

      Public
      Quickly annotate single cell genomic profiles using a reference
      HTML
      •
      MIT License
      •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

    • pyviewmaster

      Public
      Jupyter Notebook
      •
      Other
      •0•0•0•0•Updated Nov 10, 2024Nov 10, 2024

    • genosyncR

      Public
      R
      •
      Other
      •0•0•0•0•Updated Oct 4, 2024Oct 4, 2024

    • longcallR

      Public
      LongcallR is a small variant caller for single molecule long-read RNA-seq data
      Rust
      •
      MIT License
      •4•0•0•0•Updated Aug 26, 2024Aug 26, 2024

    • hooke

      Public
      A package for comparing cell type abundances between conditions
      R
      •
      Other
      •1•0•0•0•Updated Aug 15, 2024Aug 15, 2024

    • mutCaller

      Public
      call mutations in 10X data
      Rust
      •0•0•0•0•Updated Jul 24, 2024Jul 24, 2024

    • EwS_multiome

      Public
      R
      •0•0•0•0•Updated Jun 22, 2024Jun 22, 2024

    • mergebamsR

      Public
      merge and filter bam files using Rust from an R session
      JavaScript
      •
      MIT License
      •0•0•0•0•Updated Jun 12, 2024Jun 12, 2024

    • furlan-lab.github.io

      Public
      Furlan Lab
      SCSS
      •
      Other
      •0•1•0•0•Updated Jun 7, 2024Jun 7, 2024

    • rustytools

      Public
      This package brings several rust tools to the R environment
      Rust
      •
      MIT License
      •1•0•0•0•Updated Jun 7, 2024Jun 7, 2024

    • mergebams

      Public
      Command line tool for merging single cell rna-sequencing bams with intelligent tag preservation
      Rust
      •
      MIT License
      •2•3•0•0•Updated Jun 7, 2024Jun 7, 2024

    • CD27_Costim

      Public
      R
      •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

    • Il6_EC

      Public
      Shell
      •0•0•0•0•Updated Apr 25, 2024Apr 25, 2024

    • TIM3_CD8_myeloma

      Public
      Code used to generate single cell figures
      R
      •0•3•0•0•Updated Apr 19, 2024Apr 19, 2024

    • scrubletR

      Public
      R implementation of Scrublet
      R
      •
      MIT License
      •0•0•0•0•Updated Mar 5, 2024Mar 5, 2024

    • burn

      Public
      Burn is a new comprehensive dynamic Deep Learning Framework built using Rust with extreme flexibility, compute efficiency and portability as its primary goals.
      Rust
      •
      Apache License 2.0
      •501•0•0•0•Updated Jan 31, 2024Jan 31, 2024

    • HA1_paper

      Public
      Contains scripts to reproduce single-cell genomic data presented in "HA-1-targeted T cell receptor T cell therapy for recurrent leukemia after hematopoietic stem cell transplantation: results from a phase I clinical trial."
      0•0•0•0•Updated Nov 19, 2023Nov 19, 2023

    • Tr1_Eomes

      Public
      Code used to generate single cell data
      MIT License
      •0•0•0•0•Updated Sep 17, 2023Sep 17, 2023

    • mutCallR

      Public
      Import mutCaller output into R objects
      R
      •
      MIT License
      •0•0•0•0•Updated Aug 11, 2023Aug 11, 2023

    • vscode-terminal-send-bash

      Public
      TypeScript
      •
      MIT License
      •1•0•0•0•Updated Aug 9, 2023Aug 9, 2023

    • henipipe

      Public
      Pipeline for CnR, CnT
      Python
      •
      MIT License
      •5•0•0•0•Updated Jun 10, 2023Jun 10, 2023

    • scCUT-Tag

      Public
      updated links
      Jupyter Notebook
      •7•0•0•0•Updated May 12, 2023May 12, 2023

    • Code-Library

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 5, 2023Apr 5, 2023

    • minimap2-rs

      Public
      Rust bindings to minimap2 library
      Rust
      •
      Other
      •15•0•0•0•Updated Mar 21, 2023Mar 21, 2023