From eef3db8639806bca8bcec3e35e75d5488cbca2fd Mon Sep 17 00:00:00 2001
From: Oliver Schwengers <oliver.schwengers@computational.bio.uni-giessen.de>
Date: Tue, 16 Jul 2024 15:27:12 +0200
Subject: [PATCH] fix CRISPR parser #299

The assumed minimal length of CRISPR spacers was reduced from at least 10 down to at least 1 in the regex.
---
 bakta/features/crispr.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/bakta/features/crispr.py b/bakta/features/crispr.py
index 17440b29..3b7b31c1 100644
--- a/bakta/features/crispr.py
+++ b/bakta/features/crispr.py
@@ -11,7 +11,7 @@
 import bakta.utils as bu
 
 
-RE_CRISPR = re.compile(r'(\d{1,8})\s+(\d{2})\s+(\d{1,3}\.\d)\s+(?:(\d{2})\s+)?([ATGCN]+)?\s+([ATGCN\.-]+)\s*(?:([ATGCN]+))?')
+RE_CRISPR = re.compile(r'(\d{1,8})\s+(\d{2})\s+(\d{1,3}\.\d)\s+(?:(\d{1})\s+)?([ATGCN]+)?\s+([ATGCN\.-]+)\s*(?:([ATGCN]+))?')
 
 
 log = logging.getLogger('CRISPR')