title | header | description | permalink | layout |
---|---|---|---|---|
Misc. | Shamrat Kumar Paul |
Misc. |
/misc/ |
default |
Organizational role
- Jan 2021 - Research Assistant, ABEx Bio-Research Center, Dhaka 1230, Bangladesh.
- Mar 2020 - Project Mentor, Bio-Science Research Initiative, Gopalganj 8100, Bangladesh.
- Jan 2018 - Research Assistant, Evergreen Scientific Research Centre, Gopalganj 8100, Bangladesh.
Training
- Mar 29, 2020 - Training on CRISPR Cas-9 molecular biology tool conducted by Bio Bangla and Dept. of BMB, BSMRSTU, Gopalganj 8100 Bangladesh.
- Mar 08, 2019 - Hands-on Training Workshop on Molecular Biological Tools used for DNA Barcoding and Basic Bioinformatics at Molecular Pathology Lab of CVASU, Chittagong 4225, Bangladesh.
Workshops
-
Apr 22, 2018 - A journey to code and sequence 02 at BSMRSTU, Gopalganj 8100, Bangladesh.
-
Apr 06, 2018 - Code and sequence returns at BSMRSTU, Gopalganj 8100, Bangladesh.
-
Feb 10, 2018 - Training on bioinformatics at Rajshahi University, Rajshahi, Bangladesh.
-
Jan 02, 2018 - A journey to code and sequence (workshop) at BSMRSTU, Gopalganj 8100, Bangladesh.
-
Oct 29, 2017 - Workshop on Computational Chemistry at Red green research center Dhaka, Bangladesh.
-
Sep 11, 2017 - A Workshop on Synthetic Biology by Bio Bangla at NMST, Dhaka, Bangladesh.
-
Aug 06, 2017 - Workshop on Synthetic Biology by Bio Bangla at Software Technology Park, Dhaka, Bangladesh.
-
Apr 11, 2017 - Advance workshop on computational chemistry at Red Green Research Center Dhaka, Bangladesh.
BSc in Biochemistry and Molecular Biology at BSMRSTU, Gopalganj 8100, Bangladesh
Level 4.2
- BMB 421; Advanced Immunology
- BMB 423; Human Nutrition
- BMB 424; Biochemistry of Disease and Drugs
- BMB 425; Industrial Biotechnology
- BMB 426; Cell Biology
Level 4.1
- BMB 411; Basic Cell Bioloy
- BMB 412; Basic Chemistry of Natural Products
- BMB 413; Neurochemistry
- BMB 414; Genomics, Proteomics and Bioinformatics
- BMB 415; Oncology
- BMB 416; Plant Biochemistry
Level 3.2
- BMB 321; Forensic DNA Science
- BMB 322; Clinical Biochemistry
- BMB 324; Immunology
- BMB 326; Endocrinology
- BMB 327; Virology
Level 3.1
- BMB 311; Molecular Biology
- BMB 313; Molecular Genetics
- BMB 314; Basic Clinical Biochemistry
- BMB 316; Basic Immunology
- BMB 318; Pharmaceuticals Sciences
- SWISS MODEL{:target="_blank"}; Comparative Protein Modeling Server.
- MODELLER{:target="_blank"}; Peptide modeling suit.
- GROMACS{:target="_blank"}; Molecular Dynamics Simulation Package (Open source).
- Lysozyme in Water{:target="_blank"}; Tutorial by Justin A. Lemkul.
- PyRx{:target="_blank"}; Molecular Docking Software.
- PyMOL{:target="_blank"}: Molecular Graphics and Visualization interface.
- UCSF Chimera{:target="_blank"}; Graphical and visualization tools.
- Discovery Studio{:target="_blank"}; Protein-Ligand Interaction Study.
- VMD{:target="_blank"}; Molecular Dynamics Simulation data.
- MDAnalysis{:target="_blank"}; Python package for MD data analysis.
- gnuplot{:target="_blank"}; Visualizing MD data (RMSD, RMSF, Rg).
- xmgrace{:target="_blank"}; Visualizing MD data (RMSD, RMSF, Rg).
- Inkscape{:target="_blank"}; Lightweight digital illustration tool.
- GIMP{:target="_blank"}; Lightweight Photoshop alternative for low-end PC.
- MikTex{:target="_blank"}; Basic Latex interface for documentation.
- Texworks{:target="_blank"}; Console for MikTex; Latex made easy.
- Overleaf{:target="_blank"}; Webbased Latex resource and compiler.
- RDMkit{:target="_blank"}; Repositroy for large sclae MD simulation datasets.
- Markdown guide{:target="_blank"}; Learn markdown formatting for jekyll sites.
- MD simulation in 5 min{:target=_blank"}; Background of MD.
- File System Hierarchy: Linux{:target=_blank"};
- Connect Linux Terminal from Windows CMD{:target=_blank"};
- The Cell: A Molecular Approach. 2nd edition. Cooper GM. Sunderland (MA): Sinauer Associates; 2000.{:target=_blank"};
- The Cell: A Molecular Approach.8th ed.{:target="_blank"};
- 230601 Measurement of volume and mass{:target="_blank"};
- 230612 Visualizing Molecular Dynamics Data{:target="_blank"};
- 230617 Windows Can't beinstalled on Disk 0{:target="_blank"}