diff --git a/make_10x_clones_file.py b/make_10x_clones_file.py index 04c0a21..7b1a4fa 100644 --- a/make_10x_clones_file.py +++ b/make_10x_clones_file.py @@ -71,8 +71,9 @@ def read_tcr_data( else: clonotype2barcodes[clonotype].append( bc ) + print l['productive'] ## experimenting here ########################################3 - if l['productive'] != 'True': + if l['productive'].lower() != 'true': continue if l['cdr3'].lower() == 'none' or l['cdr3_nt'].lower() == 'none': continue