From e4b6a303a1919effa335976e3759db9e8c5ab553 Mon Sep 17 00:00:00 2001
From: phbradley <pbradley@fhcrc.org>
Date: Wed, 6 Oct 2021 15:30:46 -0700
Subject: [PATCH] update for 10x file format change

---
 make_10x_clones_file.py | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/make_10x_clones_file.py b/make_10x_clones_file.py
index 04c0a21..7b1a4fa 100644
--- a/make_10x_clones_file.py
+++ b/make_10x_clones_file.py
@@ -71,8 +71,9 @@ def read_tcr_data(
         else:
             clonotype2barcodes[clonotype].append( bc )
 
+        print l['productive']
         ## experimenting here ########################################3
-        if l['productive'] != 'True':
+        if l['productive'].lower() != 'true':
             continue
         if l['cdr3'].lower() == 'none' or l['cdr3_nt'].lower() == 'none':
             continue