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unittest.d
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/* Copyright (c) 2012,2013 Genome Research Ltd.
*
* Author: Stephan Schiffels <[email protected]>
*
* This file is part of msmc.
* msmc is free software: you can redistribute it and/or modify it under
* the terms of the GNU General Public License as published by the Free Software
* Foundation; either version 3 of the License, or (at your option) any later
* version.
*
* This program is distributed in the hope that it will be useful, but WITHOUT
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
* FOR A PARTICULAR PURPOSE. See the GNU General Public License for more
* details.
*
* You should have received a copy of the GNU General Public License along with
* this program. If not, see <http://www.gnu.org/licenses/>.
*/
import std.stdio;
import model.emission_rate;
import model.transition_rate;
import model.gsl_matrix_vector;
import model.data;
import model.time_intervals;
import model.msmc_hmm;
import model.propagation_core_naiveImpl;
import model.propagation_core;
import model.rate_integrator;
import model.coalescence_rate;
import model.triple_index_marginal;
import model.triple_index;
import model.msmc_model;
import model.propagation_core_fastImpl;
import model.stateVec;
import model.stateVecAllocator;
import powell;
import brent;
import maximization_step;
import expectation_step;
import amoeba;
import branchlength;
void main() {
writeln("all tests processed");
}