diff --git a/.pylintrc b/.pylintrc index d67aacb1..b35930eb 100644 --- a/.pylintrc +++ b/.pylintrc @@ -63,7 +63,9 @@ confidence= disable=too-many-lines, too-many-arguments, too-many-locals, - no-member + no-member, + too-many-positional-arguments, + too-many-statements # Enable the message, report, category or checker with the given id(s). You can # either give multiple identifier separated by comma (,) or put this option diff --git a/CHANGELOG.md b/CHANGELOG.md index 89360212..509d9ac4 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -6,6 +6,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 ## [Unreleased] ### Added +- Added custom exception to progate error messages to harmony. ### Changed ### Deprecated ### Removed diff --git a/podaac/subsetter/subset_harmony.py b/podaac/subsetter/subset_harmony.py index 9e6fa7a8..35d1775a 100644 --- a/podaac/subsetter/subset_harmony.py +++ b/podaac/subsetter/subset_harmony.py @@ -22,15 +22,17 @@ import subprocess import shutil from tempfile import mkdtemp +import traceback from typing import List, Union import pystac from pystac import Asset -import harmony +import harmony_service_lib import numpy as np -from harmony import BaseHarmonyAdapter -from harmony.util import download, stage, generate_output_filename, bbox_to_geometry +from harmony_service_lib import BaseHarmonyAdapter +from harmony_service_lib.util import download, stage, generate_output_filename, bbox_to_geometry +from harmony_service_lib.exceptions import HarmonyException from podaac.subsetter import subset from podaac.subsetter.subset import SERVICE_NAME @@ -38,6 +40,26 @@ DATA_DIRECTORY_ENV = "DATA_DIRECTORY" +class L2SSException(HarmonyException): + """Base class for exceptions in the Harmony GDAL Adapter.""" + + def __init__(self, original_exception): + # Extract the last traceback entry (most recent call) for the error location + tb = traceback.extract_tb(original_exception.__traceback__)[-1] + + # Get the error details: file, line, function, and message + filename = tb.filename + lineno = tb.lineno + funcname = tb.name + error_msg = str(original_exception) + + # Format the error message to be more readable + readable_message = (f"Error in file '{filename}', line {lineno}, in function '{funcname}': " + f"{error_msg}") + + super().__init__(readable_message, 'nasa/harmony-gdal-adapter') + + def podaac_to_harmony_bbox(bbox: np.ndarray) -> Union[np.ndarray, float]: """ Convert PO.DAAC bbox ((west, east), (south, north)) @@ -89,7 +111,7 @@ def __init__(self, message, catalog=None, config=None): self.data_dir = os.getenv(DATA_DIRECTORY_ENV, '/home/dockeruser/data') - def process_item(self, item: pystac.Item, source: harmony.message.Source) -> pystac.Item: + def process_item(self, item: pystac.Item, source: harmony_service_lib.message.Source) -> pystac.Item: """ Performs variable and bounding box subsetting on the input STAC Item's data, returning an output STAC item @@ -206,6 +228,8 @@ def filter_by_subtype(variables, subtype): # Return the STAC record return result + except Exception as ex: + raise L2SSException(ex) from ex finally: # Clean up any intermediate resources shutil.rmtree(temp_dir) @@ -240,7 +264,7 @@ def cmd(self, *args) -> List[str]: return result_str.split("\n") -def main(config: harmony.util.Config = None) -> None: +def main(config: harmony_service_lib.util.Config = None) -> None: """Parse command line arguments and invoke the service to respond to them. @@ -254,10 +278,10 @@ def main(config: harmony.util.Config = None) -> None: """ parser = argparse.ArgumentParser(prog=SERVICE_NAME, description='Run the l2_subsetter service') - harmony.setup_cli(parser) + harmony_service_lib.setup_cli(parser) args = parser.parse_args() - if harmony.is_harmony_cli(args): - harmony.run_cli(parser, args, L2SubsetterService, cfg=config) + if harmony_service_lib.is_harmony_cli(args): + harmony_service_lib.run_cli(parser, args, L2SubsetterService, cfg=config) else: parser.error("Only --harmony CLIs are supported") diff --git a/poetry.lock b/poetry.lock index 9bc1abf4..67761d28 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.1 and should not be changed by hand. 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"xyzservices-2024.9.0-py3-none-any.whl", hash = "sha256:776ae82b78d6e5ca63dd6a94abb054df8130887a4a308473b54a6bd364de8644"}, + {file = "xyzservices-2024.9.0.tar.gz", hash = "sha256:68fb8353c9dbba4f1ff6c0f2e5e4e596bb9e1db7f94f4f7dfbcb26e25aa66fde"}, ] [[package]] @@ -2761,18 +2812,22 @@ files = [ [[package]] name = "zipp" -version = "3.20.0" +version = "3.20.2" description = "Backport of pathlib-compatible object wrapper for zip files" optional = false python-versions = ">=3.8" files = [ - {file = "zipp-3.20.0-py3-none-any.whl", hash = "sha256:58da6168be89f0be59beb194da1250516fdaa062ccebd30127ac65d30045e10d"}, - {file = "zipp-3.20.0.tar.gz", hash = "sha256:0145e43d89664cfe1a2e533adc75adafed82fe2da404b4bbb6b026c0157bdb31"}, + {file = "zipp-3.20.2-py3-none-any.whl", hash = "sha256:a817ac80d6cf4b23bf7f2828b7cabf326f15a001bea8b1f9b49631780ba28350"}, + {file = "zipp-3.20.2.tar.gz", hash = "sha256:bc9eb26f4506fda01b81bcde0ca78103b6e62f991b381fec825435c836edbc29"}, ] [package.extras] +check = ["pytest-checkdocs (>=2.4)", "pytest-ruff (>=0.2.1)"] +cover = ["pytest-cov"] doc = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx (>=3.5)", "sphinx-lint"] -test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"] +enabler = ["pytest-enabler (>=2.2)"] +test = ["big-O", "importlib-resources", "jaraco.functools", "jaraco.itertools", "jaraco.test", "more-itertools", "pytest (>=6,!=8.1.*)", "pytest-ignore-flaky"] +type = ["pytest-mypy"] [extras] harmony = ["harmony-service-lib", "pystac"] @@ -2780,4 +2835,4 @@ harmony = ["harmony-service-lib", "pystac"] [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "f3ce22c899ca149b33ddf139dea8ae813717c8f092542b2020c53597d962bcbb" +content-hash = "d3aac640ba33a2f8ef59db2d3441613a19e70c9e68c3da9026d986cdde672ea3" diff --git a/pyproject.toml b/pyproject.toml index 3ecafced..9fb14930 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -32,8 +32,8 @@ netCDF4 = "^1.5" xarray = {version = "*", extras = ["parallel"]} geopandas ="^0.14.1" Shapely = "^2.0.2" -harmony-service-lib = { version = "^1.0.27", optional = true } -pystac = { version = "^0.5.3", optional = true } +harmony-service-lib = { version = "^2.0.0", optional = true } +pystac = { version = "^1.10.1", optional = true } julian = "^0.14" importlib-metadata = "^8.2.0" h5py = "^3.6.0" diff --git a/tests/test_subset_harmony.py b/tests/test_subset_harmony.py index 11268a74..6d8e3ee4 100644 --- a/tests/test_subset_harmony.py +++ b/tests/test_subset_harmony.py @@ -28,7 +28,7 @@ import podaac.subsetter from podaac.subsetter.subset_harmony import L2SubsetterService -from harmony.util import config +from harmony_service_lib.util import config @pytest.fixture()