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CI testing for the analysis2 workflow #55

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andrewkern opened this issue Jun 28, 2022 · 0 comments
Open

CI testing for the analysis2 workflow #55

andrewkern opened this issue Jun 28, 2022 · 0 comments
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enhancement New feature or request

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@andrewkern
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As discussed in the stdpopsim call on 6/28/2022, it would be great to develop some sort of CI testing for the analysis2 workflow.

  • one idea would be to set up a GH Action that triggers rerunning the pipeline on a very tiny example, and then evaluates if the proper files were created. this would probably be a simple route and easy to code.
  • A second idea would be to try to integrate real pytest integration via snakemake, but no one on the call was familiar with how exactly to do that.

thoughts?
@andrewkern andrewkern added the enhancement New feature or request label Jun 28, 2022
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@andrewkern