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generation_interval page 3, Figure 5, and Table S12
mutation_rate page 3 in Text S9
Recombination rate not specified
Estimated effective population sizes Table S12
Estimated times Table S12
Migration rates Table S12
Population indices: {description of population indices} (not sure what is meant by "population indices"!?)
Potential issues that might lead to differences between the model implementations: - the paper included Boxer haploid genome, but did not estimate any parameters for it, so the implemented model excludes the Boxer population.
PR for new model: Issue at #830 and PR at #1632
Original paper: Freedman et al. 2014 https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1004016
Parameter values:
Population indices: {description of population indices} (not sure what is meant by "population indices"!?)
Potential issues that might lead to differences between the model implementations: - the paper included Boxer haploid genome, but did not estimate any parameters for it, so the implemented model excludes the Boxer population.
QC'er requests: @gregorgorjanc
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