Singularity.2019.7-picrust2

Bootstrap: docker
From: qiime2/core:2019.7

%labels
Maintainer tejas.sevak@plantandfood.co.nz
Version 2019.1

%post -c /bin/bash
  chmod 777 /home/qiime2/q2cli/cache/completion.sh
  export LC_ALL=C.UTF-8
  export LANG=C.UTF-8
  source /opt/conda/bin/activate qiime2-2019.7
  conda install -y -c conda-forge -c bioconda -c gavinmdouglas q2-picrust2

%environment
  unset HOME
  unset XDG_CONFIG_HOME

%runscript
if [ -x /opt/conda/envs/qiime2-2019.7/bin/$SINGULARITY_NAME ]; then
    exec $SINGULARITY_NAME "$@"
else
  /bin/echo -e "This Singularity image cannot provide a single entrypoint. Please use \"singularity exec $SINGULARITY_NAME <cmd>\", where <cmd> is one of the following:\n"
  exec echo biom qiime
fi