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notebooks.yml
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name: Workflow
on:
push:
branches:
- master
pull_request:
branches:
- master
jobs:
black_format_MUST_PASS:
runs-on: ubuntu-latest
steps:
- name: Clone the reference repository
uses: actions/checkout@v2
- name: Set up Python 3.10.12
uses: actions/setup-python@v2
with:
# Change this based on the python version in Google colab
python-version: '3.10.12'
- name: Install dependencies
run: |
pip install black[jupyter]==22.3.0 # Change this based on .pre-commit-config.yaml
- name: Check code quality
run: |
black --check notebooks/book1/*/*.ipynb
black --check notebooks/book2/*/*.ipynb
static_import_check_MUST_PASS:
runs-on: ubuntu-latest
steps:
- name: Clone the reference repository
uses: actions/checkout@v2
- name: Set up Python 3.10.12
uses: actions/setup-python@v2
with:
# Change this based on the python version in Google colab
python-version: '3.10.12'
- name: Install dependencies
run: |
pip install -U --no-cache-dir -r requirements-dev.txt | cat
pip install -U --no-cache-dir -r requirements.txt | cat
- name: Check static imports
run: |
pytest -n auto -s --verbose tests/test_imports.py
execute_current_PR_notebooks_MUST_PASS:
runs-on: ubuntu-latest
if: github.event_name == 'pull_request' # Run only on pull requests
needs: [black_format_MUST_PASS, static_import_check_MUST_PASS]
container: texlive/texlive:TL2020-historic
steps:
- name: Clone the reference repository
uses: actions/checkout@v3
with:
fetch-depth: 2 # fetch latest 2 commits to see which notebooks were touched by the last commit
- name: Display notebook modification time
shell: bash
run: |
git ls-files 'notebooks/book**.ipynb' -z | xargs -0 -n1 -I{} -- git log -1 --format='%at {}' {} | sort -r
- name: Setup Python 3.10.12 (current colab version)
shell: bash
run: |
curl https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh --output miniconda.sh
mkdir /root/.conda
bash miniconda.sh -b
rm miniconda.sh
echo "export PATH=\"\$HOME/miniconda3/bin:\$PATH\"" >> /root/.bashrc
echo "source \"\$HOME/miniconda3/bin/activate\"" >> /root/.bashrc
source /root/.bashrc
conda create -n py310 python=3.10.12 -y
echo "conda activate py310" >> /root/.bashrc
- name: Install requirements
shell: bash
run: |
source /root/.bashrc
pip install -U --no-cache-dir -r requirements-dev.txt | cat
pip install -U --no-cache-dir -r requirements.txt | cat
apt update && xargs -a requirements-bash.txt apt install -y
- name: Cache datasets
id: cache-datasets
uses: actions/cache@v3
with:
path: |
/root/.keras/datasets
/root/tensorflow_datasets
${{ github.workspace }}/data
key: datasets
- name: Check notebooks for errors
shell: bash
run: |
source /root/.bashrc
pytest -n auto -s --verbose tests/test_notebooks.py
execute_all_notebooks:
strategy:
fail-fast: false
matrix:
runner_id: [0, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19]
env:
PYPROBML_GA_RUNNER_ID: ${{ matrix.runner_id }}
runs-on: ubuntu-latest
if: always() && github.event_name == 'push' # Don't run on pull requests
needs: [black_format_MUST_PASS, static_import_check_MUST_PASS]
container: texlive/texlive:TL2020-historic
steps:
- name: Clone the reference repository
uses: actions/checkout@v3
with:
fetch-depth: 0
- name: Setup Python 3.10.12 (current colab version)
shell: bash
run: |
curl https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh --output miniconda.sh
mkdir /root/.conda
bash miniconda.sh -b
rm miniconda.sh
echo "export PATH=\"\$HOME/miniconda3/bin:\$PATH\"" >> /root/.bashrc
echo "source \"\$HOME/miniconda3/bin/activate\"" >> /root/.bashrc
source /root/.bashrc
conda create -n py310 python=3.10.12 -y
echo "conda activate py310" >> /root/.bashrc
- name: Install requirements
shell: bash
run: |
source /root/.bashrc
pip install -U --no-cache-dir -r requirements-dev.txt | cat
pip install -U --no-cache-dir -r requirements.txt | cat
apt update && xargs -a requirements-bash.txt apt install -y
- name: Cache datasets
id: cache-datasets
uses: actions/cache@v3
with:
path: |
/root/.keras/datasets
/root/tensorflow_datasets
${{ github.workspace }}/data
key: datasets
- name: Check notebooks for errors
shell: bash
run: |
source /root/.bashrc
pytest -n auto -s --verbose tests/test_notebooks.py
- name: Push figures to auto_generated_figures (does not run on pull requests)
uses: peaceiris/[email protected]
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: figures/
publish_branch: auto_generated_figures_${{ matrix.runner_id }}
if: always() && github.event_name == 'push' # Don't run on pull requests
- name: Push test-results to workflow_testing_indicator (does not run on pull requests)
uses: peaceiris/[email protected]
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: test_results/
publish_branch: workflow_testing_indicator_${{ matrix.runner_id }}
if: always() && github.event_name == 'push' # Don't run on pull requests
combine_and_publish_results:
runs-on: ubuntu-latest
if: always() && github.event_name == 'push' # Don't run on pull requests
needs: [execute_all_notebooks]
steps:
- name: Clone the reference repository
uses: actions/checkout@v2
- name: Install dependencies
run: |
pip install -U --no-cache-dir -r requirements-dev.txt | cat
pip install -U --no-cache-dir -r requirements.txt | cat
pip install -U --no-cache-dir tabulate | cat
- name: Combine and publish results
run: |
python .github/scripts/combine_results.py --user_name ${{ github.repository }}
python .github/scripts/create_figure_dashboard.py --user_name ${{ github.repository }}
python .github/scripts/create_dashboard.py --user_name ${{ github.repository }}
- name: Push figures to auto_generated_figures (does not run on pull requests)
uses: peaceiris/[email protected]
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: auto_generated_figures/
publish_branch: auto_generated_figures
- name: Push test-results to workflow_testing_indicator (does not run on pull requests)
uses: peaceiris/[email protected]
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: workflow_testing_indicator/
publish_branch: workflow_testing_indicator
update_notebooks_md:
runs-on: ubuntu-latest
if: always() && github.event_name == 'push' # Don't run on pull requests
steps:
- name: Clone the reference repository
uses: actions/checkout@v2
- name: Install dependencies
run: |
pip install numpy pandas nbformat tabulate
- name: Update notebooks.md
run: |
python .github/scripts/generate_notebooks_md.py
- name: Push notebooks.md to notebooks_md (does not run on pull requests)
if: always()
uses: peaceiris/[email protected]
with:
github_token: ${{ secrets.GITHUB_TOKEN }}
publish_dir: notebooks_md/
publish_branch: auto_notebooks_md