From 0fb0ac0a66655e94778c7e284ec8a0aae2c14308 Mon Sep 17 00:00:00 2001 From: VeroDup Date: Tue, 22 Jun 2021 08:03:03 +0200 Subject: [PATCH] Use same ValidationParam as parsed one and define a default pepSetScoring if none is specified (MASCOT_STANDARD_SCORE) --- .../cortex/service/dps/msi/ImportValidateGenerateSM.scala | 7 +------ 1 file changed, 1 insertion(+), 6 deletions(-) diff --git a/proline-cortex/src/main/scala/fr/proline/cortex/service/dps/msi/ImportValidateGenerateSM.scala b/proline-cortex/src/main/scala/fr/proline/cortex/service/dps/msi/ImportValidateGenerateSM.scala index f11e4b24..c2b606eb 100644 --- a/proline-cortex/src/main/scala/fr/proline/cortex/service/dps/msi/ImportValidateGenerateSM.scala +++ b/proline-cortex/src/main/scala/fr/proline/cortex/service/dps/msi/ImportValidateGenerateSM.scala @@ -273,12 +273,7 @@ class ImportValidateGenerateSM extends AbstractRemoteProcessingService with IImp val rsValidator = ResultSetValidator( execContext = execCtx, targetRs = currentRS, - validationConfig = ValidationConfig( - pepMatchPreFilters = validationParam.pepMatchPreFilters, - pepMatchValidator = validationParam.pepMatchValidator, - protSetFilters = validationParam.protSetFilters, - protSetValidator = validationParam.protSetValidator, - pepSetScoring = Some(validationParam.pepSetScoring.getOrElse(PepSetScoring.MASCOT_STANDARD_SCORE))), + validationConfig = validationParam.copy(pepSetScoring= Some(validationParam.pepSetScoring.getOrElse(PepSetScoring.MASCOT_STANDARD_SCORE))), inferenceMethod = Some(InferenceMethod.PARSIMONIOUS), storeResultSummary = true, propagatePepMatchValidation = false,