diff --git a/.nojekyll b/.nojekyll new file mode 100644 index 00000000..e69de29b diff --git a/404.html b/404.html new file mode 100644 index 00000000..d066cae0 --- /dev/null +++ b/404.html @@ -0,0 +1,486 @@ + + + +
+ + + + + + + + + + + + + + + + + + +The byconaut
repository provides a number of helper applications with different
+types of functionalities, e.g.
These applications are in some way used to populate or manage data resources for
+bycon
driven implementations of the Beacon protokol (i.e. genomic data resources).
For more information see the dedicated documentation page).
+analysesStatusmapsRefresher
¶This is one of the housekeeping scripts which has to be run after CNV data has +been added or modified in the database. It creates CNV status data for binned +genome intervals, used for histogram generation, sample clustering etc., +as well as some other statistics (e.g. CNV coverage per chromosomal arms ...).
+-d
, --datasetIds
... to select the dataset (only one per run)--filters
... to (optionally) limit the processing to a subset of samples
+ (e.g. after a limited update)bin/analysesStatusmapsRefresher.py -d progenetix
bin/analysesStatusmapsRefresher.py -d progenetix --filters "pgx:icdom-81703"
bin/analysesStatusmapsRefresher.py -d cellz --filters "cellosaurus:CVCL_0312"
ISCNsegmenter
¶This is a helper app to transform cytogenetic CGH annotations (rev ish) to the
+canonical tab-delimited .pgxseg
segment file format.
bin/ISCNsegmenter.py -i imports/ccghtest.tab -o exports/cghtest-with-histo.pgxseg