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Brent inconsistently sees glibc errors when running Katydid through his hep cluster docker.
It appears to depend on what directory he is running Katydid from.
Here's one example:
[root@083cdbebca13 stalled_job]# Katydid -c TrackFinding-Multipeak_withEggHeader_mat.yaml -e rid000001984_evts000420-000434.mat --rootw.output-file=rid000001984_evts000420-000434.root --h5w.output-file=rid000001984_evts000420-000434.h5 17:07:14 [ PROG] /Main/Katydid.cc(23): Welcome to Katydid! *** glibc detected *** Katydid: munmap_chunk(): invalid pointer: 0x00000000032239d0 *** ======= Backtrace: ========= /lib64/libc.so.6(+0x75dee)[0x7f9ec3697dee] /lib64/libc.so.6(wordfree+0x39)[0x7f9ec36f6429] /cvmfs/hep.pnnl.gov/project8/katydid-2.6.7/build/lib/libScarab_Nymph_Katydid.so(_ZN6scarab11expand_pathERKSs+0x59)[0x7f9ec4170ff9] /cvmfs/hep.pnnl.gov/project8/katydid-2.6.7/build/lib/libScarab_Nymph_Katydid.so(_ZN6scarab16param_translator9read_fileERKSsPKNS_10param_nodeE+0x193)[0x7f9ec41809a3] /cvmfs/hep.pnnl.gov/project8/katydid-2.6.7/build/lib/libNymph_Katydid.so(_ZN5Nymph13KTApplicationC1EiPPcbPN6scarab10param_nodeE+0x5b5)[0x7f9ec441c035] /cvmfs/hep.pnnl.gov/project8/katydid-2.6.7/build/lib/libKatydidUtility.so(_ZN7Katydid12KTKatydidAppC1EiPPcbbPN6scarab10param_nodeE+0x17)[0x7f9ec48b7ef7] Katydid(_ZNSt12__shared_ptrIN7Katydid12KTKatydidAppELN9__gnu_cxx12_Lock_policyE2EEC2ISaIS1_EIRiRPPcEEESt19_Sp_make_shared_tagRKT_DpOT0_+0x60)[0x4035b0] Katydid(main+0x1a7)[0x4037b7] /lib64/libc.so.6(__libc_start_main+0xfd)[0x7f9ec3640d1d] Katydid[0x402f89]
. . . followed by a memory map that was not copied.
The text was updated successfully, but these errors were encountered:
nsoblath
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Brent inconsistently sees glibc errors when running Katydid through his hep cluster docker.
It appears to depend on what directory he is running Katydid from.
Here's one example:
. . . followed by a memory map that was not copied.
The text was updated successfully, but these errors were encountered: