From 069b7e6f94232dbd36f5cd88a39a8f68c5d008cd Mon Sep 17 00:00:00 2001
From: Andrea <andreapasquale97@gmail.com>
Date: Wed, 13 Mar 2024 12:33:41 -0400
Subject: [PATCH 1/7] build: Start updating deps

---
 poetry.lock                 | 950 +++++++++++++++++++++++++++++-------
 pyproject.toml              |   6 +-
 src/qibocal/auto/runcard.py |   2 +-
 3 files changed, 778 insertions(+), 180 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index b0b900e62..ffb029a78 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,5 +1,16 @@
 # This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
 
+[[package]]
+name = "absl-py"
+version = "2.1.0"
+description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py."
+optional = true
+python-versions = ">=3.7"
+files = [
+    {file = "absl-py-2.1.0.tar.gz", hash = "sha256:7820790efbb316739cde8b4e19357243fc3608a152024288513dd968d7d959ff"},
+    {file = "absl_py-2.1.0-py3-none-any.whl", hash = "sha256:526a04eadab8b4ee719ce68f204172ead1027549089702d99b9059f129ff1308"},
+]
+
 [[package]]
 name = "alabaster"
 version = "0.7.16"
@@ -11,6 +22,17 @@ files = [
     {file = "alabaster-0.7.16.tar.gz", hash = "sha256:75a8b99c28a5dad50dd7f8ccdd447a121ddb3892da9e53d1ca5cca3106d58d65"},
 ]
 
+[[package]]
+name = "antlr4-python3-runtime"
+version = "4.13.1"
+description = "ANTLR 4.13.1 runtime for Python 3"
+optional = false
+python-versions = "*"
+files = [
+    {file = "antlr4-python3-runtime-4.13.1.tar.gz", hash = "sha256:3cd282f5ea7cfb841537fe01f143350fdb1c0b1ce7981443a2fa8513fddb6d1a"},
+    {file = "antlr4_python3_runtime-4.13.1-py3-none-any.whl", hash = "sha256:78ec57aad12c97ac039ca27403ad61cb98aaec8a3f9bb8144f889aa0fa28b943"},
+]
+
 [[package]]
 name = "astroid"
 version = "2.15.8"
@@ -48,6 +70,21 @@ six = ">=1.12.0"
 astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"]
 test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"]
 
+[[package]]
+name = "astunparse"
+version = "1.6.3"
+description = "An AST unparser for Python"
+optional = true
+python-versions = "*"
+files = [
+    {file = "astunparse-1.6.3-py2.py3-none-any.whl", hash = "sha256:c2652417f2c8b5bb325c885ae329bdf3f86424075c4fd1a128674bc6fba4b8e8"},
+    {file = "astunparse-1.6.3.tar.gz", hash = "sha256:5ad93a8456f0d084c3456d059fd9a92cce667963232cbf763eac3bc5b7940872"},
+]
+
+[package.dependencies]
+six = ">=1.6.1,<2.0"
+wheel = ">=0.23.0,<1.0"
+
 [[package]]
 name = "attrs"
 version = "23.2.0"
@@ -373,63 +410,63 @@ test-no-images = ["pytest", "pytest-cov", "pytest-xdist", "wurlitzer"]
 
 [[package]]
 name = "coverage"
-version = "7.4.4"
+version = "7.4.3"
 description = "Code coverage measurement for Python"
 optional = false
 python-versions = ">=3.8"
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 profile = ["gprof2dot (>=2022.7.29)"]
 
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 [[package]]
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 version = "0.19"
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+
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+
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+
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 name = "markdown"
-version = "3.6"
+version = "3.5.2"
 description = "Python implementation of John Gruber's Markdown."
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -1236,6 +1529,30 @@ importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 docs = ["mdx-gh-links (>=0.2)", "mkdocs (>=1.5)", "mkdocs-gen-files", "mkdocs-literate-nav", "mkdocs-nature (>=0.6)", "mkdocs-section-index", "mkdocstrings[python]"]
 testing = ["coverage", "pyyaml"]
 
+[[package]]
+name = "markdown-it-py"
+version = "3.0.0"
+description = "Python port of markdown-it. Markdown parsing, done right!"
+optional = true
+python-versions = ">=3.8"
+files = [
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+]
+
+[package.dependencies]
+mdurl = ">=0.1,<1.0"
+
+[package.extras]
+benchmarking = ["psutil", "pytest", "pytest-benchmark"]
+code-style = ["pre-commit (>=3.0,<4.0)"]
+compare = ["commonmark (>=0.9,<1.0)", "markdown (>=3.4,<4.0)", "mistletoe (>=1.0,<2.0)", "mistune (>=2.0,<3.0)", "panflute (>=2.3,<3.0)"]
+linkify = ["linkify-it-py (>=1,<3)"]
+plugins = ["mdit-py-plugins"]
+profiling = ["gprof2dot"]
+rtd = ["jupyter_sphinx", "mdit-py-plugins", "myst-parser", "pyyaml", "sphinx", "sphinx-copybutton", "sphinx-design", "sphinx_book_theme"]
+testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"]
+
 [[package]]
 name = "markupsafe"
 version = "2.1.5"
@@ -1379,6 +1696,53 @@ files = [
     {file = "mccabe-0.7.0.tar.gz", hash = "sha256:348e0240c33b60bbdf4e523192ef919f28cb2c3d7d5c7794f74009290f236325"},
 ]
 
+[[package]]
+name = "mdurl"
+version = "0.1.2"
+description = "Markdown URL utilities"
+optional = true
+python-versions = ">=3.7"
+files = [
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+]
+
+[[package]]
+name = "ml-dtypes"
+version = "0.3.2"
+description = ""
+optional = true
+python-versions = ">=3.9"
+files = [
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+]
+
+[package.dependencies]
+numpy = [
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+    {version = ">=1.21.2", markers = "python_version >= \"3.10\" and python_version < \"3.11\""},
+    {version = ">=1.23.3", markers = "python_version >= \"3.11\""},
+]
+
+[package.extras]
+dev = ["absl-py", "pyink", "pylint (>=2.6.0)", "pytest", "pytest-xdist"]
+
 [[package]]
 name = "more-itertools"
 version = "9.1.0"
@@ -1407,6 +1771,17 @@ docs = ["sphinx"]
 gmpy = ["gmpy2 (>=2.1.0a4)"]
 tests = ["pytest (>=4.6)"]
 
+[[package]]
+name = "namex"
+version = "0.0.7"
+description = "A simple utility to separate the implementation of your Python package and its public API surface."
+optional = true
+python-versions = "*"
+files = [
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+]
+
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 name = "nest-asyncio"
 version = "1.6.0"
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+version = "1.26.4"
 description = "Fundamental package for array computing in Python"
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@@ -1573,6 +1956,44 @@ packaging = "*"
 protobuf = "*"
 sympy = "*"
 
+[[package]]
+name = "openqasm3"
+version = "0.5.0"
+description = "Reference OpenQASM AST in Python"
+optional = false
+python-versions = "*"
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+importlib-metadata = {version = "*", optional = true, markers = "python_version < \"3.10\" and extra == \"parser\""}
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+[package.extras]
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+parser = ["antlr4-python3-runtime (>=4.7,<4.14)", "importlib-metadata"]
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+
+[[package]]
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+optional = true
+python-versions = ">=3.5"
+files = [
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+tests = ["pytest", "pytest-cov", "pytest-pep8"]
+
 [[package]]
 name = "packaging"
 version = "24.0"
@@ -1827,22 +2248,22 @@ wcwidth = "*"
 
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 name = "protobuf"
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 [[package]]
@@ -2213,48 +2634,61 @@ files = [
 
 [[package]]
 name = "qibo"
-version = "0.2.4"
+version = "0.2.6"
 description = "A framework for quantum computing with hardware acceleration."
 optional = false
 python-versions = ">=3.9,<3.12"
-files = [
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-sympy = ">=1.11.1,<2.0.0"
-tabulate = ">=0.9.0,<0.10.0"
+cma = "^3.3.0"
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+joblib = "^1.2.0"
+networkx = "^3.2.1"
+numpy = "^1.26.4"
+openqasm3 = {version = ">=0.5.0", extras = ["parser"]}
+scipy = "^1.10.1"
+sympy = "^1.11.1"
+tabulate = "^0.9.0"
+
+[package.extras]
+qinfo = ["cvxpy (>=1.4.2,<2.0.0)"]
+tensorflow = ["tensorflow (>=2.14.1,<2.16)"]
+
+[package.source]
+type = "git"
+url = "https://github.com/qiboteam/qibo.git"
+reference = "fix_qibolab"
+resolved_reference = "fafc75f05d72cb1c1297b35df9d3c63cd77d67f4"
 
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 name = "qibolab"
-version = "0.1.5"
+version = "0.1.6"
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 optional = false
 python-versions = ">=3.9,<3.12"
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-numpy = "1.24.4"
-pyyaml = ">=6.0,<7.0"
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-setuptools = ">67.0.0"
 
 [package.extras]
-los = ["qcodes (>=0.37.0,<0.38.0)", "qcodes_contrib_drivers (==0.18.0)"]
+los = ["pyvisa-py (==0.5.3)", "qcodes (>=0.37.0,<0.38.0)", "qcodes_contrib_drivers (==0.18.0)"]
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-qm = ["qm-qua (==1.1.1)", "qualang-tools (==0.14.0)"]
+qm = ["qm-qua (>=1.1.6,<2.0.0)", "qualang-tools (>=0.15.0,<0.16.0)"]
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-zh = ["laboneq (==2.21.0)"]
+zh = ["laboneq (==2.25.0)"]
+
+[package.source]
+type = "git"
+url = "https://github.com/qiboteam/qibolab.git"
+reference = "unfix_numpy"
+resolved_reference = "47d1832966a21649c984c32fe5088ba144dad296"
 
 [[package]]
 name = "recommonmark"
@@ -2307,6 +2741,24 @@ files = [
 [package.dependencies]
 six = ">=1.7.0"
 
+[[package]]
+name = "rich"
+version = "13.7.1"
+description = "Render rich text, tables, progress bars, syntax highlighting, markdown and more to the terminal"
+optional = true
+python-versions = ">=3.7.0"
+files = [
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+
+[package.extras]
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+
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 name = "scikit-learn"
 version = "1.4.1.post1"
@@ -2756,6 +3208,138 @@ files = [
 [package.extras]
 doc = ["reno", "sphinx", "tornado (>=4.5)"]
 
+[[package]]
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+description = "TensorBoard lets you watch Tensors Flow"
+optional = true
+python-versions = ">=3.9"
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+six = ">1.9"
+tensorboard-data-server = ">=0.7.0,<0.8.0"
+werkzeug = ">=1.0.1"
+
+[[package]]
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+description = "Fast data loading for TensorBoard"
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+python-versions = ">=3.7"
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+keras = ">=3.0.0"
+libclang = ">=13.0.0"
+ml-dtypes = ">=0.3.1,<0.4.0"
+numpy = {version = ">=1.23.5,<2.0.0", markers = "python_version <= \"3.11\""}
+opt-einsum = ">=2.3.2"
+packaging = "*"
+protobuf = ">=3.20.3,<4.21.0 || >4.21.0,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0dev"
+requests = ">=2.21.0,<3"
+setuptools = "*"
+six = ">=1.12.0"
+tensorboard = ">=2.16,<2.17"
+tensorflow-io-gcs-filesystem = {version = ">=0.23.1", markers = "python_version < \"3.12\""}
+termcolor = ">=1.1.0"
+typing-extensions = ">=3.6.6"
+wrapt = ">=1.11.0"
+
+[package.extras]
+and-cuda = ["nvidia-cublas-cu12 (==12.3.4.1)", "nvidia-cuda-cupti-cu12 (==12.3.101)", "nvidia-cuda-nvcc-cu12 (==12.3.107)", "nvidia-cuda-nvrtc-cu12 (==12.3.107)", "nvidia-cuda-runtime-cu12 (==12.3.101)", "nvidia-cudnn-cu12 (==8.9.7.29)", "nvidia-cufft-cu12 (==11.0.12.1)", "nvidia-curand-cu12 (==10.3.4.107)", "nvidia-cusolver-cu12 (==11.5.4.101)", "nvidia-cusparse-cu12 (==12.2.0.103)", "nvidia-nccl-cu12 (==2.19.3)", "nvidia-nvjitlink-cu12 (==12.3.101)"]
+
+[[package]]
+name = "tensorflow-io-gcs-filesystem"
+version = "0.36.0"
+description = "TensorFlow IO"
+optional = true
+python-versions = ">=3.7, <3.12"
+files = [
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp310-cp310-macosx_10_14_x86_64.whl", hash = "sha256:702c6df62b38095ff613c433546d9424d4f33902a5ab26b00fd26457e27a99fa"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:e9b8aaca2789af356c42afda0f52380f82e5abb2f3c0b85087833fcfe03875d8"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:c477aed96864ceae77d7051c3b687f28813aba7320fc5dd552164fad6ec8d1a1"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:be1ff92559dfa23048b01179a1827081947583f5c6f9986ccac471df8a29322a"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp311-cp311-macosx_10_14_x86_64.whl", hash = "sha256:72c3ca4b8c0d8dbdd970699d05a100107cf200317ad8e6a8373e2c37225cd552"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp311-cp311-macosx_12_0_arm64.whl", hash = "sha256:848e8e89a0f49258c7782189c938d8d1162d989da1a80c79f95c7af3ef6006c8"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:4d72db1ab03edb65fa1e98d06e504ccbc64282d38ab3589afb6db66dc448d1c1"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:1bd4d946b5fa23220daa473a80e511a5fb27493d7e49d17dff0bb43bb0a31f32"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp312-cp312-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:fa346fd1dd9f57848b73874007440504f060fadd689fa1cc29cc49817d0eeaf3"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp39-cp39-macosx_10_14_x86_64.whl", hash = "sha256:0a4437824424a4423cf86162cb8b21b1bec24698194332748b50bb952e62ab9f"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp39-cp39-macosx_12_0_arm64.whl", hash = "sha256:31806bd7ac2db789161bc720747de22947063265561a4c17be54698fd9780b03"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:fc0e57976c1aa035af6281f0330cfb8dd50eee2f63412ecc84d60ff5075d29b7"},
+    {file = "tensorflow_io_gcs_filesystem-0.36.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:e97ff5c280eb10f699098ae21057be2b146d39e8a906cd5db91f2ea6c34e47d0"},
+]
+
+[package.extras]
+tensorflow = ["tensorflow (>=2.15.0,<2.16.0)"]
+tensorflow-aarch64 = ["tensorflow-aarch64 (>=2.15.0,<2.16.0)"]
+tensorflow-cpu = ["tensorflow-cpu (>=2.15.0,<2.16.0)"]
+tensorflow-gpu = ["tensorflow-gpu (>=2.15.0,<2.16.0)"]
+tensorflow-rocm = ["tensorflow-rocm (>=2.15.0,<2.16.0)"]
+
+[[package]]
+name = "termcolor"
+version = "2.4.0"
+description = "ANSI color formatting for output in terminal"
+optional = true
+python-versions = ">=3.8"
+files = [
+    {file = "termcolor-2.4.0-py3-none-any.whl", hash = "sha256:9297c0df9c99445c2412e832e882a7884038a25617c60cea2ad69488d4040d63"},
+    {file = "termcolor-2.4.0.tar.gz", hash = "sha256:aab9e56047c8ac41ed798fa36d892a37aca6b3e9159f3e0c24bc64a9b3ac7b7a"},
+]
+
+[package.extras]
+tests = ["pytest", "pytest-cov"]
+
 [[package]]
 name = "threadpoolctl"
 version = "3.3.0"
@@ -2880,6 +3464,20 @@ MarkupSafe = ">=2.1.1"
 [package.extras]
 watchdog = ["watchdog (>=2.3)"]
 
+[[package]]
+name = "wheel"
+version = "0.43.0"
+description = "A built-package format for Python"
+optional = true
+python-versions = ">=3.8"
+files = [
+    {file = "wheel-0.43.0-py3-none-any.whl", hash = "sha256:55c570405f142630c6b9f72fe09d9b67cf1477fcf543ae5b8dcb1f5b7377da81"},
+    {file = "wheel-0.43.0.tar.gz", hash = "sha256:465ef92c69fa5c5da2d1cf8ac40559a8c940886afcef87dcf14b9470862f1d85"},
+]
+
+[package.extras]
+test = ["pytest (>=6.0.0)", "setuptools (>=65)"]
+
 [[package]]
 name = "wmctrl"
 version = "0.5"
@@ -2978,13 +3576,13 @@ files = [
 
 [[package]]
 name = "zipp"
-version = "3.18.1"
+version = "3.18.0"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"},
-    {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"},
+    {file = "zipp-3.18.0-py3-none-any.whl", hash = "sha256:c1bb803ed69d2cce2373152797064f7e79bc43f0a3748eb494096a867e0ebf79"},
+    {file = "zipp-3.18.0.tar.gz", hash = "sha256:df8d042b02765029a09b157efd8e820451045890acc30f8e37dd2f94a060221f"},
 ]
 
 [package.extras]
@@ -2992,10 +3590,10 @@ docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.link
 testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [extras]
-classify = ["matplotlib", "onnxruntime", "seaborn", "skl2onnx"]
+classify = ["keras-tuner", "matplotlib", "onnx", "onnxruntime", "seaborn", "skl2onnx", "tensorflow"]
 viz = ["pydot"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.12"
-content-hash = "b37223ec2b01baa3c139f10a655da43d3932f44a4d95490a9779768c2bd6dfe0"
+content-hash = "8bb6750f50881910e373f01d7e3d7037d57ccc250eb01bb3629146fb2fcf2b32"
diff --git a/pyproject.toml b/pyproject.toml
index 5cfdb450c..8ca05f8a5 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -17,9 +17,9 @@ classifiers = [
 
 [tool.poetry.dependencies]
 python = ">=3.9,<3.12"
-qibolab = "^0.1.5"
-qibo = "^0.2.1"
-numpy = "^1.24.0"
+qibolab = {git = "https://github.com/qiboteam/qibolab.git", branch = "unfix_numpy" }
+qibo = {git = "https://github.com/qiboteam/qibo.git", branch = "fix_qibolab" }
+numpy = "^1.26.4"
 scipy = "^1.10.1"
 pandas = "^1.4.3"
 pydantic = "^1.10.5"
diff --git a/src/qibocal/auto/runcard.py b/src/qibocal/auto/runcard.py
index a2c6cca2d..ea5cee9d4 100644
--- a/src/qibocal/auto/runcard.py
+++ b/src/qibocal/auto/runcard.py
@@ -64,7 +64,7 @@ def __post_init__(self):
     @property
     def backend_obj(self) -> Backend:
         """Allocate backend."""
-        GlobalBackend.set_backend(self.backend, self.platform)
+        GlobalBackend.set_backend(self.backend, platform=self.platform)
         return GlobalBackend()
 
     @property

From c0caeff9f244d01366f954200312e88a3a1afd3d Mon Sep 17 00:00:00 2001
From: Andrea <andreapasquale97@gmail.com>
Date: Wed, 13 Mar 2024 12:49:41 -0400
Subject: [PATCH 2/7] build: convert qibolab to main

---
 poetry.lock    | 6 +++---
 pyproject.toml | 2 +-
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index ffb029a78..125d55e89 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -2687,8 +2687,8 @@ zh = ["laboneq (==2.25.0)"]
 [package.source]
 type = "git"
 url = "https://github.com/qiboteam/qibolab.git"
-reference = "unfix_numpy"
-resolved_reference = "47d1832966a21649c984c32fe5088ba144dad296"
+reference = "main"
+resolved_reference = "c9a0fd1b1056a53d2b8d458db9ef6a58d58ec8f3"
 
 [[package]]
 name = "recommonmark"
@@ -3596,4 +3596,4 @@ viz = ["pydot"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.12"
-content-hash = "8bb6750f50881910e373f01d7e3d7037d57ccc250eb01bb3629146fb2fcf2b32"
+content-hash = "b2e927487d4e1be6e1c3b2ae11ccde947fee0049a06a14d8f837fee5e8a9a380"
diff --git a/pyproject.toml b/pyproject.toml
index 8ca05f8a5..05c3a8b65 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -17,7 +17,7 @@ classifiers = [
 
 [tool.poetry.dependencies]
 python = ">=3.9,<3.12"
-qibolab = {git = "https://github.com/qiboteam/qibolab.git", branch = "unfix_numpy" }
+qibolab = {git = "https://github.com/qiboteam/qibolab.git", branch = "main" }
 qibo = {git = "https://github.com/qiboteam/qibo.git", branch = "fix_qibolab" }
 numpy = "^1.26.4"
 scipy = "^1.10.1"

From 53571e769759f72ff93af9c832f33c4e4d037bd7 Mon Sep 17 00:00:00 2001
From: Andrea <andreapasquale97@gmail.com>
Date: Thu, 14 Mar 2024 12:03:08 -0400
Subject: [PATCH 3/7] build: Use qibo 0.2.6

---
 poetry.lock    | 36 ++++++++++++++++--------------------
 pyproject.toml | 16 +++++++++++++---
 2 files changed, 29 insertions(+), 23 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 125d55e89..7f35a56cb 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1513,13 +1513,13 @@ files = [
 
 [[package]]
 name = "markdown"
-version = "3.5.2"
+version = "3.6"
 description = "Python implementation of John Gruber's Markdown."
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "Markdown-3.5.2-py3-none-any.whl", hash = "sha256:d43323865d89fc0cb9b20c75fc8ad313af307cc087e84b657d9eec768eddeadd"},
-    {file = "Markdown-3.5.2.tar.gz", hash = "sha256:e1ac7b3dc550ee80e602e71c1d168002f062e49f1b11e26a36264dafd4df2ef8"},
+    {file = "Markdown-3.6-py3-none-any.whl", hash = "sha256:48f276f4d8cfb8ce6527c8f79e2ee29708508bf4d40aa410fbc3b4ee832c850f"},
+    {file = "Markdown-3.6.tar.gz", hash = "sha256:ed4f41f6daecbeeb96e576ce414c41d2d876daa9a16cb35fa8ed8c2ddfad0224"},
 ]
 
 [package.dependencies]
@@ -2638,30 +2638,26 @@ version = "0.2.6"
 description = "A framework for quantum computing with hardware acceleration."
 optional = false
 python-versions = ">=3.9,<3.12"
-files = []
-develop = false
+files = [
+    {file = "qibo-0.2.6-py3-none-any.whl", hash = "sha256:7878cf890ea8f7946d74580359022277848da33213865617f6ed143a0d2b3602"},
+    {file = "qibo-0.2.6.tar.gz", hash = "sha256:145f2ab3137100746c132ee5f9e8f5c8746908e6ee025484202022172e3ec5a3"},
+]
 
 [package.dependencies]
-cma = "^3.3.0"
-hyperopt = "^0.2.7"
-joblib = "^1.2.0"
-networkx = "^3.2.1"
-numpy = "^1.26.4"
+cma = ">=3.3.0,<4.0.0"
+hyperopt = ">=0.2.7,<0.3.0"
+joblib = ">=1.2.0,<2.0.0"
+networkx = ">=3.2.1,<4.0.0"
+numpy = ">=1.26.4,<2.0.0"
 openqasm3 = {version = ">=0.5.0", extras = ["parser"]}
-scipy = "^1.10.1"
-sympy = "^1.11.1"
-tabulate = "^0.9.0"
+scipy = ">=1.10.1,<2.0.0"
+sympy = ">=1.11.1,<2.0.0"
+tabulate = ">=0.9.0,<0.10.0"
 
 [package.extras]
 qinfo = ["cvxpy (>=1.4.2,<2.0.0)"]
 tensorflow = ["tensorflow (>=2.14.1,<2.16)"]
 
-[package.source]
-type = "git"
-url = "https://github.com/qiboteam/qibo.git"
-reference = "fix_qibolab"
-resolved_reference = "fafc75f05d72cb1c1297b35df9d3c63cd77d67f4"
-
 [[package]]
 name = "qibolab"
 version = "0.1.6"
@@ -3596,4 +3592,4 @@ viz = ["pydot"]
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.12"
-content-hash = "b2e927487d4e1be6e1c3b2ae11ccde947fee0049a06a14d8f837fee5e8a9a380"
+content-hash = "6318696dc2f373d34d6e79ef35472efadc3ff8a06687c3d17a30707daa563c8e"
diff --git a/pyproject.toml b/pyproject.toml
index 05c3a8b65..0d57de8d8 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -18,10 +18,11 @@ classifiers = [
 [tool.poetry.dependencies]
 python = ">=3.9,<3.12"
 qibolab = {git = "https://github.com/qiboteam/qibolab.git", branch = "main" }
-qibo = {git = "https://github.com/qiboteam/qibo.git", branch = "fix_qibolab" }
+qibo ="^0.2.6"
 numpy = "^1.26.4"
 scipy = "^1.10.1"
 pandas = "^1.4.3"
+networkx = "^3.0"
 pydantic = "^1.10.5"
 click = "^8.1.3"
 jinja2 = "^3.1.2"
@@ -31,12 +32,18 @@ skops = "^0.6.0"
 scikit-learn = "^1.2.1"
 # Explicit dependency required to cope for dash: https://github.com/plotly/dash/issues/2557
 setuptools = "^67.8.0"
+keras-tuner = { version = "^1.3.0,<1.3.1", optional = true, markers = "sys_platform == 'linux' or sys_platform == 'darwin'" }
 matplotlib = { version = "^3.7.0", optional = true }
 seaborn = { version = "^0.12.2", optional = true }
 pydot = { version = "^1.4.2", optional = true }
+tensorflow = { version = "^2.12.0", optional = true, markers = "sys_platform == 'linux' or sys_platform == 'darwin'" }
+# TODO: the marker is a temporary solution due to the lack of the tensorflow-io 0.32.0's wheels for Windows, this package is one of
+# the tensorflow requirements
 skl2onnx = { version = "^1.14.0", optional = true }
-pyyaml = "^6.0"
 onnxruntime = { version = "^1.14.1", optional = true }
+onnx = { version = "^1.13.1", optional = true }
+pyyaml = "^6.0"
+
 
 [tool.poetry.group.test]
 optional = true
@@ -69,10 +76,13 @@ devtools = "^0.10.0"
 [tool.poetry.extras]
 
 classify = [
+  "tensorflow",
+  "keras-tuner",
   "matplotlib",
   "seaborn",
   "skl2onnx",
-  "onnxruntime"
+  "onnxruntime",
+  "onnx",
 ]
 viz = ["pydot"]
 

From 19e1b29e98be3d2e86855c236ef2083d4e7637cd Mon Sep 17 00:00:00 2001
From: andrea-pasquale <andreapasquale97@gmail.com>
Date: Thu, 21 Mar 2024 17:46:40 +0400
Subject: [PATCH 4/7] build: Use latest qibolab main

---
 poetry.lock | 385 ++++++++++++++++++++++++++--------------------------
 1 file changed, 190 insertions(+), 195 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 7f35a56cb..578150d22 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -410,63 +410,63 @@ test-no-images = ["pytest", "pytest-cov", "pytest-xdist", "wurlitzer"]
 
 [[package]]
 name = "coverage"
-version = "7.4.3"
+version = "7.4.4"
 description = "Code coverage measurement for Python"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "coverage-7.4.3-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:8580b827d4746d47294c0e0b92854c85a92c2227927433998f0d3320ae8a71b6"},
-    {file = "coverage-7.4.3-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:718187eeb9849fc6cc23e0d9b092bc2348821c5e1a901c9f8975df0bc785bfd4"},
-    {file = "coverage-7.4.3-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:767b35c3a246bcb55b8044fd3a43b8cd553dd1f9f2c1eeb87a302b1f8daa0524"},
-    {file = "coverage-7.4.3-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:ae7f19afe0cce50039e2c782bff379c7e347cba335429678450b8fe81c4ef96d"},
-    {file = "coverage-7.4.3-cp310-cp310-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ba3a8aaed13770e970b3df46980cb068d1c24af1a1968b7818b69af8c4347efb"},
-    {file = "coverage-7.4.3-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:ee866acc0861caebb4f2ab79f0b94dbfbdbfadc19f82e6e9c93930f74e11d7a0"},
-    {file = "coverage-7.4.3-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:506edb1dd49e13a2d4cac6a5173317b82a23c9d6e8df63efb4f0380de0fbccbc"},
-    {file = "coverage-7.4.3-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:fd6545d97c98a192c5ac995d21c894b581f1fd14cf389be90724d21808b657e2"},
-    {file = "coverage-7.4.3-cp310-cp310-win32.whl", hash = "sha256:f6a09b360d67e589236a44f0c39218a8efba2593b6abdccc300a8862cffc2f94"},
-    {file = "coverage-7.4.3-cp310-cp310-win_amd64.whl", hash = "sha256:18d90523ce7553dd0b7e23cbb28865db23cddfd683a38fb224115f7826de78d0"},
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@@ -826,13 +771,13 @@ woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"]
 
 [[package]]
 name = "fsspec"
-version = "2024.2.0"
+version = "2024.3.1"
 description = "File-system specification"
 optional = false
 python-versions = ">=3.8"
 files = [
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 [package.extras]
@@ -1114,13 +1059,13 @@ files = [
 
 [[package]]
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+version = "7.1.0"
 description = "Read metadata from Python packages"
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 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
@@ -1129,17 +1074,17 @@ zipp = ">=0.5"
 [package.extras]
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 [[package]]
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-version = "6.3.0"
+version = "6.4.0"
 description = "Read resources from Python packages"
 optional = true
 python-versions = ">=3.8"
 files = [
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 [package.dependencies]
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 [package.extras]
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 [[package]]
 name = "iniconfig"
@@ -1271,22 +1216,22 @@ files = [
 
 [[package]]
 name = "keras"
-version = "3.0.5"
+version = "3.1.1"
 description = "Multi-backend Keras."
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 python-versions = ">=3.9"
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 [package.dependencies]
 absl-py = "*"
-dm-tree = "*"
 h5py = "*"
 ml-dtypes = "*"
 namex = "*"
 numpy = "*"
+optree = "*"
 rich = "*"
 
 [[package]]
@@ -1495,20 +1440,20 @@ files = [
 
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-version = "16.0.6"
+version = "18.1.1"
 description = "Clang Python Bindings, mirrored from the official LLVM repo: https://github.com/llvm/llvm-project/tree/main/clang/bindings/python, to make the installation process easier."
 optional = true
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 [[package]]
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 tests = ["pytest", "pytest-cov", "pytest-pep8"]
 
+[[package]]
+name = "optree"
+version = "0.10.0"
+description = "Optimized PyTree Utilities."
+optional = true
+python-versions = ">=3.7"
+files = [
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+[package.dependencies]
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+
+[package.extras]
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+docs = ["docutils", "jax[cpu]", "numpy", "sphinx (>=5.2.1)", "sphinx-autoapi", "sphinx-autobuild", "sphinx-autodoc-typehints (>=1.19.2)", "sphinx-copybutton", "sphinx-rtd-theme", "sphinxcontrib-bibtex", "torch"]
+jax = ["jax"]
+lint = ["black (>=22.6.0)", "cpplint", "doc8 (<1.0.0a0)", "flake8", "flake8-bugbear", "flake8-comprehensions", "flake8-docstrings", "flake8-pyi", "flake8-simplify", "isort (>=5.11.0)", "mypy (>=0.990)", "pre-commit", "pydocstyle", "pyenchant", "pylint[spelling] (>=2.15.0)", "ruff", "xdoctest"]
+numpy = ["numpy"]
+test = ["pytest", "pytest-cov", "pytest-xdist"]
+torch = ["torch"]
+
 [[package]]
 name = "packaging"
 version = "24.0"
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@@ -2593,15 +2597,8 @@ files = [
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     {file = "PyYAML-6.0.1-cp36-cp36m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:1fe35611261b29bd1de0070f0b2f47cb6ff71fa6595c077e42bd0c419fa27b98"},
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@@ -2618,7 +2615,6 @@ files = [
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     {file = "PyYAML-6.0.1-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:7e07cbde391ba96ab58e532ff4803f79c4129397514e1413a7dc761ccd755735"},
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@@ -2626,7 +2622,6 @@ files = [
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     {file = "PyYAML-6.0.1-cp39-cp39-win32.whl", hash = "sha256:faca3bdcf85b2fc05d06ff3fbc1f83e1391b3e724afa3feba7d13eeab355484c"},
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     {file = "PyYAML-6.0.1.tar.gz", hash = "sha256:bfdf460b1736c775f2ba9f6a92bca30bc2095067b8a9d77876d1fad6cc3b4a43"},
@@ -2671,12 +2666,12 @@ develop = false
 more-itertools = "^9.1.0"
 networkx = "^3.0"
 numpy = "^1.26.4"
-qibo = ">=0.2.3"
+qibo = ">=0.2.6"
 
 [package.extras]
 los = ["pyvisa-py (==0.5.3)", "qcodes (>=0.37.0,<0.38.0)", "qcodes_contrib_drivers (==0.18.0)"]
 qblox = ["pyvisa-py (==0.5.3)", "qblox-instruments (==0.11.0)", "qcodes (>=0.37.0,<0.38.0)", "qcodes_contrib_drivers (==0.18.0)"]
-qm = ["qm-qua (>=1.1.6,<2.0.0)", "qualang-tools (>=0.15.0,<0.16.0)"]
+qm = ["qm-qua (==1.1.6)", "qualang-tools (>=0.15.0,<0.16.0)"]
 rfsoc = ["qibosoq (>=0.0.4,<0.2)"]
 zh = ["laboneq (==2.25.0)"]
 
@@ -2684,7 +2679,7 @@ zh = ["laboneq (==2.25.0)"]
 type = "git"
 url = "https://github.com/qiboteam/qibolab.git"
 reference = "main"
-resolved_reference = "c9a0fd1b1056a53d2b8d458db9ef6a58d58ec8f3"
+resolved_reference = "55477ea53659cd57b506b376cfaee63ce7f4da8b"
 
 [[package]]
 name = "recommonmark"
@@ -3338,13 +3333,13 @@ tests = ["pytest", "pytest-cov"]
 
 [[package]]
 name = "threadpoolctl"
-version = "3.3.0"
+version = "3.4.0"
 description = "threadpoolctl"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "threadpoolctl-3.3.0-py3-none-any.whl", hash = "sha256:6155be1f4a39f31a18ea70f94a77e0ccd57dced08122ea61109e7da89883781e"},
-    {file = "threadpoolctl-3.3.0.tar.gz", hash = "sha256:5dac632b4fa2d43f42130267929af3ba01399ef4bd1882918e92dbc30365d30c"},
+    {file = "threadpoolctl-3.4.0-py3-none-any.whl", hash = "sha256:8f4c689a65b23e5ed825c8436a92b818aac005e0f3715f6a1664d7c7ee29d262"},
+    {file = "threadpoolctl-3.4.0.tar.gz", hash = "sha256:f11b491a03661d6dd7ef692dd422ab34185d982466c49c8f98c8f716b5c93196"},
 ]
 
 [[package]]
@@ -3572,13 +3567,13 @@ files = [
 
 [[package]]
 name = "zipp"
-version = "3.18.0"
+version = "3.18.1"
 description = "Backport of pathlib-compatible object wrapper for zip files"
 optional = false
 python-versions = ">=3.8"
 files = [
-    {file = "zipp-3.18.0-py3-none-any.whl", hash = "sha256:c1bb803ed69d2cce2373152797064f7e79bc43f0a3748eb494096a867e0ebf79"},
-    {file = "zipp-3.18.0.tar.gz", hash = "sha256:df8d042b02765029a09b157efd8e820451045890acc30f8e37dd2f94a060221f"},
+    {file = "zipp-3.18.1-py3-none-any.whl", hash = "sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b"},
+    {file = "zipp-3.18.1.tar.gz", hash = "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715"},
 ]
 
 [package.extras]

From 995ff68573a56fa7ed36749909b6b38fbbb1f185 Mon Sep 17 00:00:00 2001
From: Andrea <andreapasquale97@gmail.com>
Date: Thu, 21 Mar 2024 19:28:42 +0400
Subject: [PATCH 5/7] test: Fix tests

---
 poetry.lock                 | 589 ++----------------------------------
 pyproject.toml              |  14 +-
 src/qibocal/auto/runcard.py |   7 +-
 3 files changed, 32 insertions(+), 578 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 578150d22..f9e255766 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -1,16 +1,5 @@
 # This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand.
 
-[[package]]
-name = "absl-py"
-version = "2.1.0"
-description = "Abseil Python Common Libraries, see https://github.com/abseil/abseil-py."
-optional = true
-python-versions = ">=3.7"
-files = [
-    {file = "absl-py-2.1.0.tar.gz", hash = "sha256:7820790efbb316739cde8b4e19357243fc3608a152024288513dd968d7d959ff"},
-    {file = "absl_py-2.1.0-py3-none-any.whl", hash = "sha256:526a04eadab8b4ee719ce68f204172ead1027549089702d99b9059f129ff1308"},
-]
-
 [[package]]
 name = "alabaster"
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-]
-
-[package.dependencies]
-absl-py = ">=1.0.0"
-astunparse = ">=1.6.0"
-flatbuffers = ">=23.5.26"
-gast = ">=0.2.1,<0.5.0 || >0.5.0,<0.5.1 || >0.5.1,<0.5.2 || >0.5.2"
-google-pasta = ">=0.1.1"
-grpcio = ">=1.24.3,<2.0"
-h5py = ">=3.10.0"
-keras = ">=3.0.0"
-libclang = ">=13.0.0"
-ml-dtypes = ">=0.3.1,<0.4.0"
-numpy = {version = ">=1.23.5,<2.0.0", markers = "python_version <= \"3.11\""}
-opt-einsum = ">=2.3.2"
-packaging = "*"
-protobuf = ">=3.20.3,<4.21.0 || >4.21.0,<4.21.1 || >4.21.1,<4.21.2 || >4.21.2,<4.21.3 || >4.21.3,<4.21.4 || >4.21.4,<4.21.5 || >4.21.5,<5.0.0dev"
-requests = ">=2.21.0,<3"
-setuptools = "*"
-six = ">=1.12.0"
-tensorboard = ">=2.16,<2.17"
-tensorflow-io-gcs-filesystem = {version = ">=0.23.1", markers = "python_version < \"3.12\""}
-termcolor = ">=1.1.0"
-typing-extensions = ">=3.6.6"
-wrapt = ">=1.11.0"
-
-[package.extras]
-and-cuda = ["nvidia-cublas-cu12 (==12.3.4.1)", "nvidia-cuda-cupti-cu12 (==12.3.101)", "nvidia-cuda-nvcc-cu12 (==12.3.107)", "nvidia-cuda-nvrtc-cu12 (==12.3.107)", "nvidia-cuda-runtime-cu12 (==12.3.101)", "nvidia-cudnn-cu12 (==8.9.7.29)", "nvidia-cufft-cu12 (==11.0.12.1)", "nvidia-curand-cu12 (==10.3.4.107)", "nvidia-cusolver-cu12 (==11.5.4.101)", "nvidia-cusparse-cu12 (==12.2.0.103)", "nvidia-nccl-cu12 (==2.19.3)", "nvidia-nvjitlink-cu12 (==12.3.101)"]
-
-[[package]]
-name = "tensorflow-io-gcs-filesystem"
-version = "0.36.0"
-description = "TensorFlow IO"
-optional = true
-python-versions = ">=3.7, <3.12"
-files = [
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-]
-
-[package.extras]
-tensorflow = ["tensorflow (>=2.15.0,<2.16.0)"]
-tensorflow-aarch64 = ["tensorflow-aarch64 (>=2.15.0,<2.16.0)"]
-tensorflow-cpu = ["tensorflow-cpu (>=2.15.0,<2.16.0)"]
-tensorflow-gpu = ["tensorflow-gpu (>=2.15.0,<2.16.0)"]
-tensorflow-rocm = ["tensorflow-rocm (>=2.15.0,<2.16.0)"]
-
-[[package]]
-name = "termcolor"
-version = "2.4.0"
-description = "ANSI color formatting for output in terminal"
-optional = true
-python-versions = ">=3.8"
-files = [
-    {file = "termcolor-2.4.0-py3-none-any.whl", hash = "sha256:9297c0df9c99445c2412e832e882a7884038a25617c60cea2ad69488d4040d63"},
-    {file = "termcolor-2.4.0.tar.gz", hash = "sha256:aab9e56047c8ac41ed798fa36d892a37aca6b3e9159f3e0c24bc64a9b3ac7b7a"},
-]
-
-[package.extras]
-tests = ["pytest", "pytest-cov"]
-
 [[package]]
 name = "threadpoolctl"
 version = "3.4.0"
@@ -3455,20 +2928,6 @@ MarkupSafe = ">=2.1.1"
 [package.extras]
 watchdog = ["watchdog (>=2.3)"]
 
-[[package]]
-name = "wheel"
-version = "0.43.0"
-description = "A built-package format for Python"
-optional = true
-python-versions = ">=3.8"
-files = [
-    {file = "wheel-0.43.0-py3-none-any.whl", hash = "sha256:55c570405f142630c6b9f72fe09d9b67cf1477fcf543ae5b8dcb1f5b7377da81"},
-    {file = "wheel-0.43.0.tar.gz", hash = "sha256:465ef92c69fa5c5da2d1cf8ac40559a8c940886afcef87dcf14b9470862f1d85"},
-]
-
-[package.extras]
-test = ["pytest (>=6.0.0)", "setuptools (>=65)"]
-
 [[package]]
 name = "wmctrl"
 version = "0.5"
@@ -3581,10 +3040,10 @@ docs = ["furo", "jaraco.packaging (>=9.3)", "jaraco.tidelift (>=1.4)", "rst.link
 testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=2.2)", "pytest-ignore-flaky", "pytest-mypy", "pytest-ruff (>=0.2.1)"]
 
 [extras]
-classify = ["keras-tuner", "matplotlib", "onnx", "onnxruntime", "seaborn", "skl2onnx", "tensorflow"]
+classify = ["matplotlib", "onnxruntime", "seaborn", "skl2onnx"]
 viz = ["pydot"]
 
 [metadata]
 lock-version = "2.0"
 python-versions = ">=3.9,<3.12"
-content-hash = "6318696dc2f373d34d6e79ef35472efadc3ff8a06687c3d17a30707daa563c8e"
+content-hash = "5cb7c1c993aade97fed175178829ac52df3c35fe379e4107d1a88efe00aabfdd"
diff --git a/pyproject.toml b/pyproject.toml
index 0d57de8d8..62aadd9ec 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -22,7 +22,6 @@ qibo ="^0.2.6"
 numpy = "^1.26.4"
 scipy = "^1.10.1"
 pandas = "^1.4.3"
-networkx = "^3.0"
 pydantic = "^1.10.5"
 click = "^8.1.3"
 jinja2 = "^3.1.2"
@@ -32,18 +31,12 @@ skops = "^0.6.0"
 scikit-learn = "^1.2.1"
 # Explicit dependency required to cope for dash: https://github.com/plotly/dash/issues/2557
 setuptools = "^67.8.0"
-keras-tuner = { version = "^1.3.0,<1.3.1", optional = true, markers = "sys_platform == 'linux' or sys_platform == 'darwin'" }
 matplotlib = { version = "^3.7.0", optional = true }
 seaborn = { version = "^0.12.2", optional = true }
 pydot = { version = "^1.4.2", optional = true }
-tensorflow = { version = "^2.12.0", optional = true, markers = "sys_platform == 'linux' or sys_platform == 'darwin'" }
-# TODO: the marker is a temporary solution due to the lack of the tensorflow-io 0.32.0's wheels for Windows, this package is one of
-# the tensorflow requirements
 skl2onnx = { version = "^1.14.0", optional = true }
-onnxruntime = { version = "^1.14.1", optional = true }
-onnx = { version = "^1.13.1", optional = true }
 pyyaml = "^6.0"
-
+onnxruntime = { version = "^1.14.1", optional = true }
 
 [tool.poetry.group.test]
 optional = true
@@ -76,13 +69,10 @@ devtools = "^0.10.0"
 [tool.poetry.extras]
 
 classify = [
-  "tensorflow",
-  "keras-tuner",
   "matplotlib",
   "seaborn",
   "skl2onnx",
-  "onnxruntime",
-  "onnx",
+  "onnxruntime"
 ]
 viz = ["pydot"]
 
diff --git a/src/qibocal/auto/runcard.py b/src/qibocal/auto/runcard.py
index ea5cee9d4..9bb856675 100644
--- a/src/qibocal/auto/runcard.py
+++ b/src/qibocal/auto/runcard.py
@@ -5,6 +5,7 @@
 
 from pydantic.dataclasses import dataclass
 from qibo.backends import Backend, GlobalBackend
+from qibo.transpiler.pipeline import Passes
 from qibolab.platform import Platform
 from qibolab.qubits import QubitId, QubitPairId
 
@@ -65,7 +66,11 @@ def __post_init__(self):
     def backend_obj(self) -> Backend:
         """Allocate backend."""
         GlobalBackend.set_backend(self.backend, platform=self.platform)
-        return GlobalBackend()
+        backend = GlobalBackend()
+        # FIXME: remove this latin abomination
+        backend.transpiler = Passes(connectivity=backend.platform.topology)
+        backend.transpiler.passes = backend.transpiler.passes[-1:]
+        return backend
 
     @property
     def platform_obj(self) -> Platform:

From 1148b557a6c08576016a8b9492010584aff95e40 Mon Sep 17 00:00:00 2001
From: Andrea <andreapasquale97@gmail.com>
Date: Thu, 21 Mar 2024 19:43:00 +0400
Subject: [PATCH 6/7] style: Remove print

---
 tests/test_task_options.py | 1 -
 1 file changed, 1 deletion(-)

diff --git a/tests/test_task_options.py b/tests/test_task_options.py
index 6d69c5717..a3d95b0e3 100644
--- a/tests/test_task_options.py
+++ b/tests/test_task_options.py
@@ -52,7 +52,6 @@ def modify_card(card, targets=None, update=None):
 def test_targets_argument(platform, local_targets, tmp_path):
     """Test possible qubits combinations between global and local."""
     runcard = Runcard.load(modify_card(DUMMY_CARD, targets=local_targets))
-    print(runcard)
     task = Task(runcard.actions[0])
 
     completed = task.run(

From c3439ee25703a73df83842d80616987417a3f3e9 Mon Sep 17 00:00:00 2001
From: Andrea <andreapasquale97@gmail.com>
Date: Thu, 21 Mar 2024 21:34:21 +0400
Subject: [PATCH 7/7] fix: Fix task_options tests

---
 tests/test_task_options.py | 33 +++++++++++++++------------------
 1 file changed, 15 insertions(+), 18 deletions(-)

diff --git a/tests/test_task_options.py b/tests/test_task_options.py
index a3d95b0e3..f70066850 100644
--- a/tests/test_task_options.py
+++ b/tests/test_task_options.py
@@ -17,15 +17,12 @@
     ReadoutMitigationMatrixParameters,
 )
 
-PLATFORM = create_platform("dummy")
-QUBITS = list(PLATFORM.qubits)
+TARGETS = [0, 1, 2]
 DUMMY_CARD = {
-    "backend": "numpy",
-    "targets": QUBITS,
+    "targets": TARGETS,
     "actions": [
         {
             "id": "standard rb",
-            "priority": 0,
             "operation": "standard_rb",
             "parameters": {
                 "depths": [1, 5, 10],
@@ -37,8 +34,9 @@
 }
 
 
-def modify_card(card, targets=None, update=None):
+def modify_card(card, targets=None, update=None, backend="qibolab"):
     """Modify runcard to change local targets or update."""
+    card["backend"] = backend
     for action in card["actions"]:
         if targets is not None:
             action["targets"] = targets
@@ -47,35 +45,35 @@ def modify_card(card, targets=None, update=None):
     return card
 
 
-@pytest.mark.parametrize("platform", [None, PLATFORM])
+@pytest.mark.parametrize("backend", ["numpy", "qibolab"])
 @pytest.mark.parametrize("local_targets", [None, [0, 1]])
-def test_targets_argument(platform, local_targets, tmp_path):
+def test_targets_argument(backend, local_targets, tmp_path):
     """Test possible qubits combinations between global and local."""
-    runcard = Runcard.load(modify_card(DUMMY_CARD, targets=local_targets))
+    runcard = Runcard.load(
+        modify_card(DUMMY_CARD, targets=local_targets, backend=backend)
+    )
     task = Task(runcard.actions[0])
 
     completed = task.run(
         max_iterations=1,
-        platform=platform,
-        targets=list(QUBITS),
+        platform=runcard.platform,
+        targets=TARGETS,
         mode=ExecutionMode.acquire,
         folder=tmp_path,
     )
     if local_targets:
         assert completed.task.targets == local_targets
     else:
-        assert completed.task.targets == list(QUBITS)
-        assert runcard.targets == list(QUBITS)
+        assert completed.task.targets == TARGETS
+        assert runcard.targets == TARGETS
 
 
 UPDATE_CARD = {
-    "targets": QUBITS,
+    "targets": TARGETS,
     "actions": [
         {
             "id": "readout frequency",
-            "priority": 0,
             "operation": "resonator_frequency",
-            "main": "classification",
             "parameters": {
                 "freq_width": 10_000_000,
                 "freq_step": 100_000,
@@ -83,7 +81,6 @@ def test_targets_argument(platform, local_targets, tmp_path):
         },
         {
             "id": "classification",
-            "priority": 0,
             "operation": "single_shot_classification",
             "parameters": {"nshots": 100},
         },
@@ -101,7 +98,7 @@ def test_update_argument(global_update, local_update, tmp_path):
         Runcard.load(NEW_CARD),
         tmp_path,
         platform,
-        platform.qubits,
+        list(platform.qubits),
         update=global_update,
     )