Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Problems installing R 4.4.2 on macOS #950

Closed
IndrajeetPatil opened this issue Nov 21, 2024 · 8 comments
Closed

Problems installing R 4.4.2 on macOS #950

IndrajeetPatil opened this issue Nov 21, 2024 · 8 comments
Labels
bug an unexpected problem or unintended behavior

Comments

@IndrajeetPatil
Copy link
Contributor

cf. https://github.com/r-lib/lintr/actions/runs/11959986455/job/33343838214

Error: Failed to get R release: Failed to get R 4.4.2: Failed to install qpdf: Error: The process '/opt/homebrew/bin/brew' failed with exit code 1

Seems similar to #280
@IndrajeetPatil IndrajeetPatil added the bug an unexpected problem or unintended behavior label Nov 21, 2024
@gaborcsardi
Copy link
Member

gaborcsardi commented Nov 21, 2024 •
edited
Loading

How do you know that this is not a network error or an issue with homebrew, but a bug in r-lib/actions? Can you re-run that job with debug logging?

@IndrajeetPatil
Copy link
Contributor Author

I thought that initially and retried three times but it's failed with the same error.

@cortinah
Copy link

i have the same issue. Thanks for looking into it!

@Longfei2
Copy link

I have the same issue.
{2F58D568-1C69-429A-8CB9-EE74A9A3C765}

@remlapmot
Copy link
Contributor

I've had the same failure https://github.com/WSpiller/MVMR/actions/runs/11968521460/job/33367492489

I just re-ran the failed job and it passed; so I assume this is a GitHub actions network issue (I have experience of GitHub actions network problems, e.g., I have a different repo in which the windows-latest job loses internet connection so regularly that I had to disable it).

zktuong added a commit to tuonglab/dandelionR that referenced this issue Nov 22, 2024
@zktuong
Update R-CMD-check.yml
87b7629 
Disabling macos tests until r-lib/actions#950 is resolved
@IndrajeetPatil
Copy link
Contributor Author

Thanks, @remlapmot.
I can confirm that the issue is indeed resolved now and wasn't related to r-lib/actions.

Sorry for the false alarm, @gaborcsardi!

zktuong added a commit to tuonglab/dandelionR that referenced this issue Nov 22, 2024
@zktuong @Jiawei-Yu10
Draft vignette and minor updates to DESCRIPTION (#7)
a86c1d3 
* add biocViews

then repeat

* change version

New packages submitted to Bioconductor should set Version: 0.99.0 in the DESCRIPTION file. Specifying y=99 triggers a bump in x at the next release which in this case results in version 1.0.0.

* Update DESCRIPTION

* add orcid and vignette

* add vignetteBuilder

* Update DESCRIPTION

* see if this helps fix the constant failing

* don't need to run  it twice

* also add all 3 runners

* update cache version because of warnings

* add pandoc

* ok simplify the vignette runner

* simplify the r cmd check runner

* trying to update vignettes

but the demo_pseudo_rds is too big

* path is required

* last commit for the evening

* Update vignette.yml

* add retries

* Revert "add retries"

This reverts commit 5f20f13.

* be more precise with the r cache

* bloack the evaluation until demo is packaged

* Update R-CMD-check.yml

* be more precise again

* Update vignette.yml

* Update R-CMD-check.yml

Disabling macos tests until r-lib/actions#950 is resolved

* let's go!

* ok nvm

* Update README.md

---------

Co-authored-by: Yu Jiawei <[email protected]>
@ygeunkim ygeunkim mentioned this issue Nov 22, 2024
Closed
wlandau added a commit to r-multiverse/community that referenced this issue Nov 22, 2024
@wlandau
Install from source
03749af 
c.f. r-lib/actions#948, r-lib/actions#950
@cjyetman cjyetman mentioned this issue Nov 23, 2024
Merged
@stibu81
Copy link

stibu81 commented Nov 25, 2024

I also had this problem, reruns did not help. The issue is fixed with #953.

@stibu81 stibu81 mentioned this issue Nov 25, 2024
Merged
@pbastide pbastide mentioned this issue Nov 25, 2024
Merged
@github-actions GitHub Actions
Copy link

This issue has been automatically locked. If you believe you have found a related problem, please file a new issue and include a link to this issue

@github-actions github-actions bot locked as resolved and limited conversation to collaborators Dec 10, 2024
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Assignees
No one assigned
Labels
bug an unexpected problem or unintended behavior
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
6 participants
@gaborcsardi @remlapmot @stibu81 @IndrajeetPatil @cortinah @Longfei2