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modified argumenet name for identify parser to be more accurate and a… CI #40: Commit 1581cfe pushed by ashuaibi7
December 12, 2024 15:11 42s main
main
December 12, 2024 15:11 42s
added todo comment as reminder to implement EM using pomegranate library CI #39: Commit 159bac9 pushed by ashuaibi7
December 12, 2024 14:59 49s main
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December 12, 2024 14:59 49s
create missing docstrings and revise old docstrings to use sphinx sty… CI #38: Commit 442e2f1 pushed by ashuaibi7
December 11, 2024 15:59 41s main
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December 11, 2024 15:59 41s
extract methods for data verification of bmr_pmf and counts CI #37: Commit 2fa862c pushed by ashuaibi7
December 11, 2024 13:07 39s main
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December 11, 2024 13:07 39s
implemented EM algorithm from scratch for single gene model and creat… CI #36: Commit 85fc53d pushed by ashuaibi7
December 10, 2024 18:08 41s main
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December 10, 2024 18:08 41s
created unit tests for single gene class and methods CI #35: Commit b5f2fd9 pushed by ashuaibi7
December 4, 2024 16:36 40s main
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December 4, 2024 16:36 40s
ensure probability of gene in bmr_pmf is nonzero to avoid computing l… CI #34: Commit 0eba595 pushed by ashuaibi7
December 4, 2024 16:34 43s main
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December 4, 2024 16:34 43s
switched defaultdict to normal dict for bmr_pmf to avoid issues in re… CI #33: Commit 77cca09 pushed by ashuaibi7
December 4, 2024 16:26 38s main
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December 4, 2024 16:26 38s
modified check on instance variables to compare to None instead due t… CI #32: Commit 7fbfd25 pushed by ashuaibi7
December 4, 2024 16:05 48s main
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December 4, 2024 16:05 48s
Update and prioritize next steps CI #31: Commit 6a97d3d pushed by ashuaibi7
November 23, 2024 13:20 1m 33s main
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November 23, 2024 13:20 1m 33s
implemented optimization with scipy for interaction class CI #30: Commit 18901fa pushed by ashuaibi7
November 23, 2024 13:18 45s main
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November 23, 2024 13:18 45s
implemented rho computation method CI #29: Commit ec99e0a pushed by ashuaibi7
November 23, 2024 13:10 41s main
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November 23, 2024 13:10 41s
fixed null tau declaration in likelihood ratio test method CI #28: Commit 3f41cdf pushed by ashuaibi7
November 23, 2024 13:02 1m 27s main
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November 23, 2024 13:02 1m 27s
fixed variable typo and made log likelihood code more readable CI #27: Commit 92b4ec1 pushed by ashuaibi7
November 23, 2024 12:56 1m 35s main
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November 23, 2024 12:56 1m 35s
implemented wald statistic computation method CI #26: Commit 1aa5429 pushed by ashuaibi7
November 23, 2024 12:46 39s main
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November 23, 2024 12:46 39s
implemented log odds ratio method CI #25: Commit 9b11007 pushed by ashuaibi7
November 23, 2024 12:46 47s main
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November 23, 2024 12:46 47s
implemented log likelihood method for pairwise interactions CI #24: Commit c450795 pushed by ashuaibi7
November 23, 2024 12:21 1m 28s main
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November 23, 2024 12:21 1m 28s
initialize and template new class for interactions between genes CI #23: Commit d7cf319 pushed by ashuaibi7
November 23, 2024 12:03 40s main
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November 23, 2024 12:03 40s
fix minor spelling error CI #22: Commit 1a809cb pushed by ashuaibi7
November 23, 2024 12:03 46s main
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November 23, 2024 12:03 46s
begin identify implementation and map out remaining steps as TODO sta… CI #21: Commit e7d0b87 pushed by ashuaibi7
November 22, 2024 13:38 39s main
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November 22, 2024 13:38 39s
create template functions for EM from scratch and EM using pomegranat… CI #20: Commit 2d27a1b pushed by ashuaibi7
November 22, 2024 13:37 42s main
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November 22, 2024 13:37 42s
implemented pi parameter value estimation with optimization CI #19: Commit f183185 pushed by ashuaibi7
November 22, 2024 12:56 47s main
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November 22, 2024 12:56 47s
removed binarize counts method and contingency table method in the si… CI #18: Commit c237f29 pushed by ashuaibi7
November 22, 2024 12:33 40s main
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November 22, 2024 12:33 40s
updated log likelihood method to pass in pi and implemented likelihoo… CI #17: Commit d5ab92c pushed by ashuaibi7
November 22, 2024 12:31 39s main
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November 22, 2024 12:31 39s
simplified log odds ratio calculation cases and implementation to imp… CI #16: Commit 74d6398 pushed by ashuaibi7
November 22, 2024 12:20 41s main
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November 22, 2024 12:20 41s
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