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Input to segmentCNV2.R which uses CGHcall. #5

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erikla opened this issue Jun 2, 2015 · 0 comments
Open

Input to segmentCNV2.R which uses CGHcall. #5

erikla opened this issue Jun 2, 2015 · 0 comments

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@erikla
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erikla commented Jun 2, 2015

Hi,

I too wonder what input is used by absCNSeq. I used copy number calls from varscan2 as input to DNAcopy, generated smoothed segments and merged them. You mentioned segment2CNV2.R is the input in Issue #1 . What is the input for segment2CNV2.R? Rather, what are the steps I need to follow to correctly feed data to absCNSeq?

Thanks.
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@erikla