diff --git a/build.gradle b/build.gradle
index bc273c14..19ff5f5e 100644
--- a/build.gradle
+++ b/build.gradle
@@ -22,7 +22,7 @@ apply plugin: "com.github.ben-manes.versions"   //  ./gradlew dependencyUpdates
 
 
 group = 'cz.siret'
-version = '2.5-dev.9'
+version = '2.5-dev.10'
 
 description = 'Ligand binding site prediction based on machine learning.'
 
@@ -170,28 +170,28 @@ dependencies {
     implementation 'org.apache.groovy:groovy:4.0.22'
 
     implementation 'org.codehaus.gpars:gpars:1.2.1'
-    implementation 'org.apache.commons:commons-lang3:3.15.0'
+    implementation 'org.apache.commons:commons-lang3:3.17.0'
     implementation 'org.apache.commons:commons-math3:3.6.1'
     implementation 'commons-io:commons-io:2.16.1'
-    implementation 'com.google.guava:guava:33.2.1-jre'
+    implementation 'com.google.guava:guava:33.3.0-jre'
     implementation 'com.google.code.gson:gson:2.11.0'
     implementation 'com.univocity:univocity-parsers:2.9.1' // csv parser
     implementation 'org.apache.commons:commons-csv:1.11.0'
     implementation 'org.zeroturnaround:zt-zip:1.17'
-    implementation 'org.apache.commons:commons-compress:1.26.2'
+    implementation 'org.apache.commons:commons-compress:1.27.1'
     implementation 'org.tukaani:xz:1.10'
-    implementation 'com.github.luben:zstd-jni:1.5.6-4'
+    implementation 'com.github.luben:zstd-jni:1.5.6-5'
     implementation 'com.github.dpaukov:combinatoricslib3:3.4.0'
     implementation 'us.ihmc:euclid:0.21.0'
 
-    implementation 'org.slf4j:slf4j-api:2.0.13'
-    implementation 'org.apache.logging.log4j:log4j-core:2.23.1'
-    implementation 'org.apache.logging.log4j:log4j-slf4j2-impl:2.23.1'
-    implementation 'org.slf4j:jul-to-slf4j:2.0.13'         // for netlib logging messages
+    implementation 'org.slf4j:slf4j-api:2.0.16'
+    implementation 'org.slf4j:jul-to-slf4j:2.0.16'         // for netlib logging messages
+    implementation 'org.apache.logging.log4j:log4j-core:2.24.0'
+    implementation 'org.apache.logging.log4j:log4j-slf4j2-impl:2.24.0'
 
-    implementation 'org.biojava:biojava-core:7.1.1'
-    implementation 'org.biojava:biojava-alignment:7.1.1'
-    implementation 'org.biojava:biojava-structure:7.1.1'
+    implementation 'org.biojava:biojava-core:7.1.3'
+    implementation 'org.biojava:biojava-alignment:7.1.3'
+    implementation 'org.biojava:biojava-structure:7.1.3'
 
     implementation 'org.openscience.cdk:cdk-qsarmolecular:2.9'    // for NumericalSurface class
     implementation 'org.openscience.cdk:cdk-silent:2.9'           // for Atom class
@@ -202,7 +202,7 @@ dependencies {
 
     implementation fileTree(dir: 'lib', include: '*.jar')
 
-    testImplementation 'org.junit.jupiter:junit-jupiter-engine:5.10.3'
-    testRuntimeOnly 'org.junit.jupiter:junit-jupiter-engine:5.10.3'
+    testImplementation 'org.junit.jupiter:junit-jupiter-engine:5.11.0'
+    testRuntimeOnly 'org.junit.jupiter:junit-jupiter-engine:5.11.0'
 
 }