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Spagedi and SNPs #3

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phrh opened this issue Jan 21, 2021 · 2 comments
Open

Spagedi and SNPs #3

phrh opened this issue Jan 21, 2021 · 2 comments

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@phrh
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phrh commented Jan 21, 2021

Hello,
I want to know if Spagedi works with SNPs data? I checked the examples but I didn't find any file with this type of data. If it works do you have an example file that I can use as guide?

Best Regards

@AthenaSnow
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I have the same problem. Have you solved it now?

@AthenaSnow
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For SNP data you can code genotypes as 11 for AA, 12 for AC, 23 for CG, etc... 0 for missing data. In the first line containing the 6 format number you must enter #samples, #pop, #spatial coordinates, #loci, 1(=number of digits for 1 allele), 2(=diploid)

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