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Technically it would only be an embedding for an (algebraically) incompressible surface. The map is reasonably-computable with the code in NCellularData. . . once that code is up and running again.
You could also get the map on homology and see what the fundamental class represents, etc. This is a pretty reasonable thing to code up. . . eventually.
Specifically, the embedding of the fundamental group of the surface within the fundamental group of the enclosing manifold.
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